BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039163
(551 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase
From Cannabis Sativa
Length = 518
Score = 446 bits (1147), Expect = e-125, Method: Compositional matrix adjust.
Identities = 236/519 (45%), Positives = 309/519 (59%), Gaps = 35/519 (6%)
Query: 44 FLDCLRS---DNSSISQVIYTKYXXXXXXXXXXXTQNLRFSTPNTPKPQVIITPLDVSQV 100
FL C +N + +++YT++ QNLRF + TPKP VI+TP + S +
Sbjct: 7 FLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNSHI 66
Query: 101 QAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKISVDAKQKTAWVQSGA 160
QA I CSKK GLQIR RSGGHD EG+SY+S VPFVV+DL N+ I +D +TAWV++GA
Sbjct: 67 QATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAWVEAGA 126
Query: 161 TLGQLYYRIAEKSKNLXXXXXXXXXXXXXXXXXXXXXXIMLRKFGLAADNIVDAHLIDAH 220
TLG++YY I EK++NL ++R +GLAADNI+DAHL++
Sbjct: 127 TLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHLVNVD 186
Query: 221 GRLLDRKSMGEDLFWXXXXXXXXXXXXXXXWKLRLVTVPSTVTRFTITRTLE-QNATKIV 279
G++LDRKSMGEDLFW WK++LV VPS T F++ + +E K+
Sbjct: 187 GKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLVKLF 246
Query: 280 HKWQYVANNLHEDLVIEVGLIKMNXXXXXXXXXXXX---------GGVDRLLPLMQESFP 330
+KWQ +A +DLV+ I N GGVD L+ LM +SFP
Sbjct: 247 NKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKSFP 306
Query: 331 ELGLRKDDCTEMSWIESV--------HNLAGFDKGQSLDLLLDRNARSNGLVVKSTTKSP 382
ELG++K DC E SWI++ N A F K ++LLDR+A K+
Sbjct: 307 ELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKK----EILLDRSAGK---------KTA 353
Query: 383 FKAKADYVKQPIPENAFEGIYDKFYEEEGETAFIVLVPYGGKMSEISESETPFPHRAGNL 442
F K DYVK+PIPE A I +K YEE+ VL PYGG M EISES PFPHRAG +
Sbjct: 354 FSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIM 413
Query: 443 YKIFYGVSWGGDGISQRHIDWIRSLYSYMTPYVSKNPREAYVNYRDLDIG-INNPGYTSI 501
Y+++Y SW +++HI+W+RS+Y++ TPYVS+NPR AY+NYRDLD+G N+ +
Sbjct: 414 YELWYTASWEKQEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNY 473
Query: 502 EQASIWGNKYFKNNFKRLVHVKTMADPHNFFRNEQSIPP 540
QA IWG KYF NF RLV VKT DP+NFFRNEQSIPP
Sbjct: 474 TQARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPP 512
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
pdb|4DNS|B Chain B, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
Length = 497
Score = 381 bits (979), Expect = e-106, Method: Compositional matrix adjust.
Identities = 207/510 (40%), Positives = 281/510 (55%), Gaps = 22/510 (4%)
Query: 35 PADHHNENLFLDCLRSDNSSISQVIYTKYXXXXXXXXXXXTQNLRFSTPNTPKPQVIITP 94
P E FL CL D + +Y K +N++F + T KP IITP
Sbjct: 4 PYAKQVERDFLTCLTKDIPP--RQLYAKSSPAYASVWSSTVRNIKFLSDKTVKPLYIITP 61
Query: 95 LDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVP--FVVIDLINLCKISVDAKQK 152
+ S +QAA+ C ++ G++IRVRSGGHD+EGLSY S P F V+D+ + +S+D K
Sbjct: 62 TNASHIQAAVVCGRRHGMRIRVRSGGHDYEGLSYRSEKPEPFAVVDMNKMRAVSIDGKAA 121
Query: 153 TAWVQSGATLGQLYYRIAEKSKNLXXXXXXXXXXXXXXXXXXXXXXIMLRKFGLAADNIV 212
TAWV SGA LG LYY IA+ S L ++LRK+G AADN++
Sbjct: 122 TAWVDSGAQLGDLYYGIAKASPKLGFPAGVCTTIGVGGHFSGGGFGMLLRKYGTAADNVI 181
Query: 213 DAHLIDAHGRLLDRKSMGEDLFWXXXXXXXXXXXXXXXWKLRLVTVPSTVTRFTITRTLE 272
DA ++DA GRLLDRK+MGED FW W+++L+ VP VT F + + ++
Sbjct: 182 DAKVVDAQGRLLDRKAMGEDHFWAIRGGGGESFGIVASWQVKLLPVPPKVTVFQVHKGIK 241
Query: 273 QNATKIVHKWQYVANNLHEDLVIEVGLIKMNXXXXXXXXXXXXGGVDRLLPLMQESFPEL 332
+ A +V KWQ VA L +DL+I + M G L+ LM FPEL
Sbjct: 242 EGAIDLVTKWQTVAPALPDDLMIRI----MAMGQGAMFEALYLGTCKDLVLLMTARFPEL 297
Query: 333 GLRKDDCTEMSWIESVHNLAGFDKGQSLDLLLDRNARSNGLVVKSTTKSPFKAKADYVKQ 392
G+ C EM+WIESV + KG DLL N SN K+ K K+DYV +
Sbjct: 298 GMNATHCKEMTWIESVPYIPMGPKGTVRDLL---NRTSN-------IKAFGKYKSDYVLE 347
Query: 393 PIPENAFEGIYDKFYEEEGETAFIVLVPYGGKMSEISESETPFPHRAGNLYKIFYGVSWG 452
PIP++ +E I+ + +++ PYGG ++ + ES TPFP R+G L+ I Y V W
Sbjct: 348 PIPKSDWEKIFTWLVKPG--AGVMIMDPYGGGIASVPESATPFPRRSGVLFNIQYVVYWF 405
Query: 453 GDGISQRHIDWIRSLYSYMTPYVSKNPREAYVNYRDLDIGINN--PGYTSIEQASIWGNK 510
G+G + W R +Y +MTPYVSKNPR+AYVNYRDLD+G+N ++ +WG K
Sbjct: 406 GEGAAALPTQWTRDIYDFMTPYVSKNPRQAYVNYRDLDLGVNQVVGNVSTYASGKVWGEK 465
Query: 511 YFKNNFKRLVHVKTMADPHNFFRNEQSIPP 540
YFK NF+RL K DP ++FRNEQSIPP
Sbjct: 466 YFKGNFERLARTKGKIDPEDYFRNEQSIPP 495
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|B Chain B, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
Length = 500
Score = 360 bits (924), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 195/502 (38%), Positives = 276/502 (54%), Gaps = 22/502 (4%)
Query: 44 FLDCLRSDNSSISQVIYTKYXXXXXXXXXXXTQNLRFSTPNTPKPQVIITPLDVSQVQAA 103
FL CL + +++Y K +N R+S+P+ KP IITP VS +Q+A
Sbjct: 11 FLGCLVKEIPP--RLLYAKSSPAYPSVLGQTIRNSRWSSPDNVKPLYIITPTQVSHIQSA 68
Query: 104 IKCSKKQGLQIRVRSGGHDFEGLSYVSHVP--FVVIDLINLCKISVDAKQKTAWVQSGAT 161
+ C ++ ++IRVRSGGHD+EGLSY S P F V+DL + + VD K +TAWV SGA
Sbjct: 69 VVCGRRHSVRIRVRSGGHDYEGLSYRSLQPETFAVVDLNKMRAVWVDGKARTAWVDSGAQ 128
Query: 162 LGQLYYRIAEKSKNLXXXXXXXXXXXXXXXXXXXXXXIMLRKFGLAADNIVDAHLIDAHG 221
LG+LYY I + S L ++LRK+G+AA+N++D L+DA+G
Sbjct: 129 LGELYYAIYKASPTLAFPAGVCPTIGVGGNFAGGGFGMLLRKYGIAAENVIDVKLVDANG 188
Query: 222 RLLDRKSMGEDLFWXXXXXXXXXXXXXXXWKLRLVTVPSTVTRFTITRTLEQNATKIVHK 281
+L D+KSMG+D FW W+++L+ VP TVT F I++T+ + A I++K
Sbjct: 189 KLHDKKSMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIFKISKTVSEGAVDIINK 248
Query: 282 WQYVANNLHEDLVIEVGLIKMNXXXXXXXXXXXXGGVDRLLPLMQESFPELGLRKDDCTE 341
WQ VA L DL+I + + G L PLM FPELG+ C E
Sbjct: 249 WQVVAPQLPADLMIRI----IAQGPKATFEAMYLGTCKTLTPLMSSKFPELGMNPSHCNE 304
Query: 342 MSWIESVHNLAGFDKGQSLDLLLDRNARSNGLVVKSTTKSPF-KAKADYVKQPIPENAFE 400
MSWI+S+ + L R+A + L+ + + PF + K+DYV QP P+ +E
Sbjct: 305 MSWIQSIPFVH----------LGHRDALEDDLLNRQNSFKPFAEYKSDYVYQPFPKTVWE 354
Query: 401 GIYDKFYEEEGETAFIVLVPYGGKMSEISESETPFPHRAGNLYKIFYGVSWGGDGISQRH 460
I + + + G ++ PYG +S ES TPFPHR G L+ I Y W G +
Sbjct: 355 QILNTWLVKPG-AGIMIFDPYGATISATPESATPFPHRKGVLFNIQYVNYWFAPGAAAAP 413
Query: 461 IDWIRSLYSYMTPYVSKNPREAYVNYRDLDIGINNP--GYTSIEQASIWGNKYFKNNFKR 518
+ W + +Y+YM PYVSKNPR+AY NYRD+D+G N ++ +WG KYFK NF+R
Sbjct: 414 LSWSKDIYNYMEPYVSKNPRQAYANYRDIDLGRNEVVNDVSTYASGKVWGQKYFKGNFER 473
Query: 519 LVHVKTMADPHNFFRNEQSIPP 540
L K DP ++FRNEQSIPP
Sbjct: 474 LAITKGKVDPTDYFRNEQSIPP 495
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In
Complex With (S)-Reticuline
Length = 497
Score = 332 bits (851), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 188/481 (39%), Positives = 261/481 (54%), Gaps = 37/481 (7%)
Query: 76 QNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFV 135
QN F KP II P ++ I+C +K IR+RSGGH +EGLSY S PF+
Sbjct: 34 QNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFI 93
Query: 136 VIDLINLCKISVDAKQKTAWVQSGATLGQLYYRIAEKSKNLXXXXXXXXXXXXXXXXXXX 195
+IDL+NL ++S+D + +TAWV+SG+TLG+LYY I E S L
Sbjct: 94 LIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWAPTVGTGGHISGG 153
Query: 196 XXXIMLRKFGLAADNIVDAHLIDAHGRLLDRKSMGEDLFWXXXXXXXXXXXXXXXWKLRL 255
+M RK+GLAADN+VDA LIDA+G +LDR++MGED+FW WK++L
Sbjct: 154 GFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKL 213
Query: 256 VTVPSTVTRFTITRTLE-QNATKIVHKWQYVANNLHEDLVIEVGLIKMNXXXXXXXXXXX 314
+ VP VT F +T+ + AT ++HKWQ+VA L ED + V L +
Sbjct: 214 LPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSV-LGGADEKQVWLTMLGF 272
Query: 315 XGGVDRLL-PLMQESFPELGLRKDDCTEMSWIESVHNLAGFDKGQSLD---LLLDRNARS 370
G+ + FPELGL ++D EMSW ES LAG + L+ L D A
Sbjct: 273 HFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERA-- 330
Query: 371 NGLVVKSTTKSPFKAKADYVKQPIPENAFEGIYDKFYEEEGETAFIVLVPYGGKMSEISE 430
FK K D K+P+P AF G+ ++ +E FI L +GG+MS+IS
Sbjct: 331 ------------FKTKVDLTKEPLPSKAFYGLLERLSKE--PNGFIALNGFGGQMSKISS 376
Query: 431 SETPFPHRAGNLYKIFYGVSWGGDGISQR--HIDWIRSLYSYMTPYVSKNPREAYVNYRD 488
TPFPHR+G + Y V+W ++ +DW+ +Y +M P+VSKNPR YVN+ D
Sbjct: 377 DFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHID 436
Query: 489 LDIG---------INNPGYTSIEQASIWGNKYFKNNFKRLVHVKTMADPHNFFRNEQSIP 539
LD+G +NN +IE + WG YF +N++RL+ KT+ DP+N F + QSIP
Sbjct: 437 LDLGGIDWGNKTVVNN----AIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIP 492
Query: 540 P 540
P
Sbjct: 493 P 493
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant
Length = 495
Score = 332 bits (851), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 188/481 (39%), Positives = 261/481 (54%), Gaps = 37/481 (7%)
Query: 76 QNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFV 135
QN F KP II P ++ I+C +K IR+RSGGH +EGLSY S PF+
Sbjct: 34 QNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFI 93
Query: 136 VIDLINLCKISVDAKQKTAWVQSGATLGQLYYRIAEKSKNLXXXXXXXXXXXXXXXXXXX 195
+IDL+NL ++S+D + +TAWV+SG+TLG+LYY I E S L
Sbjct: 94 LIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWAPTVGTGGHISGG 153
Query: 196 XXXIMLRKFGLAADNIVDAHLIDAHGRLLDRKSMGEDLFWXXXXXXXXXXXXXXXWKLRL 255
+M RK+GLAADN+VDA LIDA+G +LDR++MGED+FW WK++L
Sbjct: 154 GFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKL 213
Query: 256 VTVPSTVTRFTITRTLE-QNATKIVHKWQYVANNLHEDLVIEVGLIKMNXXXXXXXXXXX 314
+ VP VT F +T+ + AT ++HKWQ+VA L ED + V L +
Sbjct: 214 LPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSV-LGGADEKQVWLTMLGF 272
Query: 315 XGGVDRLL-PLMQESFPELGLRKDDCTEMSWIESVHNLAGFDKGQSLD---LLLDRNARS 370
G+ + FPELGL ++D EMSW ES LAG + L+ L D A
Sbjct: 273 HFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERA-- 330
Query: 371 NGLVVKSTTKSPFKAKADYVKQPIPENAFEGIYDKFYEEEGETAFIVLVPYGGKMSEISE 430
FK K D K+P+P AF G+ ++ +E FI L +GG+MS+IS
Sbjct: 331 ------------FKTKVDLTKEPLPSKAFYGLLERLSKE--PNGFIALNGFGGQMSKISS 376
Query: 431 SETPFPHRAGNLYKIFYGVSWGGDGISQR--HIDWIRSLYSYMTPYVSKNPREAYVNYRD 488
TPFPHR+G + Y V+W ++ +DW+ +Y +M P+VSKNPR YVN+ D
Sbjct: 377 DFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHID 436
Query: 489 LDIG---------INNPGYTSIEQASIWGNKYFKNNFKRLVHVKTMADPHNFFRNEQSIP 539
LD+G +NN +IE + WG YF +N++RL+ KT+ DP+N F + QSIP
Sbjct: 437 LDLGGIDWGNKTVVNN----AIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIP 492
Query: 540 P 540
P
Sbjct: 493 P 493
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Reticuline
pdb|3D2H|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Monoclinic Crystal Form
pdb|3D2J|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Tetragonal Crystal Form
Length = 538
Score = 332 bits (851), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 188/481 (39%), Positives = 261/481 (54%), Gaps = 37/481 (7%)
Query: 76 QNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFV 135
QN F KP II P ++ I+C +K IR+RSGGH +EGLSY S PF+
Sbjct: 59 QNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFI 118
Query: 136 VIDLINLCKISVDAKQKTAWVQSGATLGQLYYRIAEKSKNLXXXXXXXXXXXXXXXXXXX 195
+IDL+NL ++S+D + +TAWV+SG+TLG+LYY I E S L
Sbjct: 119 LIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGG 178
Query: 196 XXXIMLRKFGLAADNIVDAHLIDAHGRLLDRKSMGEDLFWXXXXXXXXXXXXXXXWKLRL 255
+M RK+GLAADN+VDA LIDA+G +LDR++MGED+FW WK++L
Sbjct: 179 GFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKL 238
Query: 256 VTVPSTVTRFTITRTLE-QNATKIVHKWQYVANNLHEDLVIEVGLIKMNXXXXXXXXXXX 314
+ VP VT F +T+ + AT ++HKWQ+VA L ED + V L +
Sbjct: 239 LPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSV-LGGADEKQVWLTMLGF 297
Query: 315 XGGVDRLL-PLMQESFPELGLRKDDCTEMSWIESVHNLAGFDKGQSLD---LLLDRNARS 370
G+ + FPELGL ++D EMSW ES LAG + L+ L D A
Sbjct: 298 HFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERA-- 355
Query: 371 NGLVVKSTTKSPFKAKADYVKQPIPENAFEGIYDKFYEEEGETAFIVLVPYGGKMSEISE 430
FK K D K+P+P AF G+ ++ +E FI L +GG+MS+IS
Sbjct: 356 ------------FKTKVDLTKEPLPSKAFYGLLERLSKE--PNGFIALNGFGGQMSKISS 401
Query: 431 SETPFPHRAGNLYKIFYGVSWGGDGISQR--HIDWIRSLYSYMTPYVSKNPREAYVNYRD 488
TPFPHR+G + Y V+W ++ +DW+ +Y +M P+VSKNPR YVN+ D
Sbjct: 402 DFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHID 461
Query: 489 LDIG---------INNPGYTSIEQASIWGNKYFKNNFKRLVHVKTMADPHNFFRNEQSIP 539
LD+G +NN +IE + WG YF +N++RL+ KT+ DP+N F + QSIP
Sbjct: 462 LDLGGIDWGNKTVVNN----AIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIP 517
Query: 540 P 540
P
Sbjct: 518 P 518
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In
Complex With (S)-Reticuline
Length = 519
Score = 332 bits (850), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 188/481 (39%), Positives = 261/481 (54%), Gaps = 37/481 (7%)
Query: 76 QNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFV 135
QN F KP II P ++ I+C +K IR+RSGGH +EGLSY S PF+
Sbjct: 40 QNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFI 99
Query: 136 VIDLINLCKISVDAKQKTAWVQSGATLGQLYYRIAEKSKNLXXXXXXXXXXXXXXXXXXX 195
+IDL+NL ++S+D + +TAWV+SG+TLG+LYY I E S L
Sbjct: 100 LIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGAISGG 159
Query: 196 XXXIMLRKFGLAADNIVDAHLIDAHGRLLDRKSMGEDLFWXXXXXXXXXXXXXXXWKLRL 255
+M RK+GLAADN+VDA LIDA+G +LDR++MGED+FW WK++L
Sbjct: 160 GFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKL 219
Query: 256 VTVPSTVTRFTITRTLE-QNATKIVHKWQYVANNLHEDLVIEVGLIKMNXXXXXXXXXXX 314
+ VP VT F +T+ + AT ++HKWQ+VA L ED + V L +
Sbjct: 220 LPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSV-LGGADEKQVWLTMLGF 278
Query: 315 XGGVDRLL-PLMQESFPELGLRKDDCTEMSWIESVHNLAGFDKGQSLD---LLLDRNARS 370
G+ + FPELGL ++D EMSW ES LAG + L+ L D A
Sbjct: 279 HFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERA-- 336
Query: 371 NGLVVKSTTKSPFKAKADYVKQPIPENAFEGIYDKFYEEEGETAFIVLVPYGGKMSEISE 430
FK K D K+P+P AF G+ ++ +E FI L +GG+MS+IS
Sbjct: 337 ------------FKTKVDLTKEPLPSKAFYGLLERLSKE--PNGFIALNGFGGQMSKISS 382
Query: 431 SETPFPHRAGNLYKIFYGVSWGGDGISQR--HIDWIRSLYSYMTPYVSKNPREAYVNYRD 488
TPFPHR+G + Y V+W ++ +DW+ +Y +M P+VSKNPR YVN+ D
Sbjct: 383 DFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHID 442
Query: 489 LDIG---------INNPGYTSIEQASIWGNKYFKNNFKRLVHVKTMADPHNFFRNEQSIP 539
LD+G +NN +IE + WG YF +N++RL+ KT+ DP+N F + QSIP
Sbjct: 443 LDLGGIDWGNKTVVNN----AIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIP 498
Query: 540 P 540
P
Sbjct: 499 P 499
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
Dehydroscoulerine
Length = 519
Score = 332 bits (850), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 188/481 (39%), Positives = 261/481 (54%), Gaps = 37/481 (7%)
Query: 76 QNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFV 135
QN F KP II P ++ I+C +K IR+RSGGH +EGLSY S PF+
Sbjct: 40 QNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFI 99
Query: 136 VIDLINLCKISVDAKQKTAWVQSGATLGQLYYRIAEKSKNLXXXXXXXXXXXXXXXXXXX 195
+IDL+NL ++S+D + +TAWV+SG+TLG+LYY I E S L
Sbjct: 100 LIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGG 159
Query: 196 XXXIMLRKFGLAADNIVDAHLIDAHGRLLDRKSMGEDLFWXXXXXXXXXXXXXXXWKLRL 255
+M RK+GLAADN+VDA LIDA+G +LDR++MGED+FW WK++L
Sbjct: 160 GFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKL 219
Query: 256 VTVPSTVTRFTITRTLE-QNATKIVHKWQYVANNLHEDLVIEVGLIKMNXXXXXXXXXXX 314
+ VP VT F +T+ + AT ++HKWQ+VA L ED + V L +
Sbjct: 220 LPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSV-LGGADEKQVWLTMLGF 278
Query: 315 XGGVDRLL-PLMQESFPELGLRKDDCTEMSWIESVHNLAGFDKGQSLD---LLLDRNARS 370
G+ + FPELGL ++D EMSW ES LAG + L+ L D A
Sbjct: 279 HFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERA-- 336
Query: 371 NGLVVKSTTKSPFKAKADYVKQPIPENAFEGIYDKFYEEEGETAFIVLVPYGGKMSEISE 430
FK K D K+P+P AF G+ ++ +E FI L +GG+MS+IS
Sbjct: 337 ------------FKTKVDLTKEPLPSKAFYGLLERLSKE--PNGFIALNGFGGQMSKISS 382
Query: 431 SETPFPHRAGNLYKIFYGVSWGGDGISQR--HIDWIRSLYSYMTPYVSKNPREAYVNYRD 488
TPFPHR+G + Y V+W ++ +DW+ +Y +M P+VSKNPR YVN+ D
Sbjct: 383 DFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHID 442
Query: 489 LDIG---------INNPGYTSIEQASIWGNKYFKNNFKRLVHVKTMADPHNFFRNEQSIP 539
LD+G +NN +IE + WG YF +N++RL+ KT+ DP+N F + QSIP
Sbjct: 443 LDLGGIDWGNKTVVNN----AIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIP 498
Query: 540 P 540
P
Sbjct: 499 P 499
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Scoulerine
Length = 495
Score = 332 bits (850), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 188/481 (39%), Positives = 261/481 (54%), Gaps = 37/481 (7%)
Query: 76 QNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFV 135
QN F KP II P ++ I+C +K IR+RSGGH +EGLSY S PF+
Sbjct: 34 QNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFI 93
Query: 136 VIDLINLCKISVDAKQKTAWVQSGATLGQLYYRIAEKSKNLXXXXXXXXXXXXXXXXXXX 195
+IDL+NL ++S+D + +TAWV+SG+TLG+LYY I E S L
Sbjct: 94 LIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGG 153
Query: 196 XXXIMLRKFGLAADNIVDAHLIDAHGRLLDRKSMGEDLFWXXXXXXXXXXXXXXXWKLRL 255
+M RK+GLAADN+VDA LIDA+G +LDR++MGED+FW WK++L
Sbjct: 154 GFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKL 213
Query: 256 VTVPSTVTRFTITRTLE-QNATKIVHKWQYVANNLHEDLVIEVGLIKMNXXXXXXXXXXX 314
+ VP VT F +T+ + AT ++HKWQ+VA L ED + V L +
Sbjct: 214 LPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSV-LGGADEKQVWLTMLGF 272
Query: 315 XGGVDRLL-PLMQESFPELGLRKDDCTEMSWIESVHNLAGFDKGQSLD---LLLDRNARS 370
G+ + FPELGL ++D EMSW ES LAG + L+ L D A
Sbjct: 273 HFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERA-- 330
Query: 371 NGLVVKSTTKSPFKAKADYVKQPIPENAFEGIYDKFYEEEGETAFIVLVPYGGKMSEISE 430
FK K D K+P+P AF G+ ++ +E FI L +GG+MS+IS
Sbjct: 331 ------------FKTKVDLTKEPLPSKAFYGLLERLSKE--PNGFIALNGFGGQMSKISS 376
Query: 431 SETPFPHRAGNLYKIFYGVSWGGDGISQR--HIDWIRSLYSYMTPYVSKNPREAYVNYRD 488
TPFPHR+G + Y V+W ++ +DW+ +Y +M P+VSKNPR YVN+ D
Sbjct: 377 DFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHID 436
Query: 489 LDIG---------INNPGYTSIEQASIWGNKYFKNNFKRLVHVKTMADPHNFFRNEQSIP 539
LD+G +NN +IE + WG YF +N++RL+ KT+ DP+N F + QSIP
Sbjct: 437 LDLGGIDWGNKTVVNN----AIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIP 492
Query: 540 P 540
P
Sbjct: 493 P 493
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant
Length = 498
Score = 328 bits (841), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 187/481 (38%), Positives = 260/481 (54%), Gaps = 37/481 (7%)
Query: 76 QNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFV 135
QN F KP II P ++ I+C +K IR+RSGG +EGLSY S PF+
Sbjct: 37 QNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGASYEGLSYTSDTPFI 96
Query: 136 VIDLINLCKISVDAKQKTAWVQSGATLGQLYYRIAEKSKNLXXXXXXXXXXXXXXXXXXX 195
+IDL+NL ++S+D + +TAWV+SG+TLG+LYY I E S L
Sbjct: 97 LIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGG 156
Query: 196 XXXIMLRKFGLAADNIVDAHLIDAHGRLLDRKSMGEDLFWXXXXXXXXXXXXXXXWKLRL 255
+M RK+GLAADN+VDA LIDA+G +LDR++MGED+FW WK++L
Sbjct: 157 GFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKL 216
Query: 256 VTVPSTVTRFTITRTLE-QNATKIVHKWQYVANNLHEDLVIEVGLIKMNXXXXXXXXXXX 314
+ VP VT F +T+ + AT ++HKWQ+VA L ED + V L +
Sbjct: 217 LPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSV-LGGADEKQVWLTMLGF 275
Query: 315 XGGVDRLL-PLMQESFPELGLRKDDCTEMSWIESVHNLAGFDKGQSLD---LLLDRNARS 370
G+ + FPELGL ++D EMSW ES LAG + L+ L D A
Sbjct: 276 HFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERA-- 333
Query: 371 NGLVVKSTTKSPFKAKADYVKQPIPENAFEGIYDKFYEEEGETAFIVLVPYGGKMSEISE 430
FK K D K+P+P AF G+ ++ +E FI L +GG+MS+IS
Sbjct: 334 ------------FKTKVDLTKEPLPSKAFYGLLERLSKE--PNGFIALNGFGGQMSKISS 379
Query: 431 SETPFPHRAGNLYKIFYGVSWGGDGISQR--HIDWIRSLYSYMTPYVSKNPREAYVNYRD 488
TPFPHR+G + Y V+W ++ +DW+ +Y +M P+VSKNPR YVN+ D
Sbjct: 380 DFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHID 439
Query: 489 LDIG---------INNPGYTSIEQASIWGNKYFKNNFKRLVHVKTMADPHNFFRNEQSIP 539
LD+G +NN +IE + WG YF +N++RL+ KT+ DP+N F + QSIP
Sbjct: 440 LDLGGIDWGNKTVVNN----AIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIP 495
Query: 540 P 540
P
Sbjct: 496 P 496
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDW|B Chain B, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|A Chain A, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|B Chain B, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|C Chain C, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|D Chain D, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
Length = 523
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 12/164 (7%)
Query: 384 KAKADYVKQPIPENAFEGIYDKFYEEEG-ETAFIVLVPYGGKMSEISESETPFPHRAGNL 442
K KA Y+++ + + + +Y+ +G + + L+ YGGK++ + + T P R L
Sbjct: 365 KTKAGYLRKRLTDRQIQAVYENMTHMDGIDYGAVWLIGYGGKVNTVDPAATALPQRDAIL 424
Query: 443 YKIFYGVSWGGDGISQRHIDWIRSLYSYM------TPYVSKNPREAYVNYRDLDIGINNP 496
K+ Y W G +H+ W+R LY+ + P + AY+NY D D+ +P
Sbjct: 425 -KVNYITGWANPGNEAKHLTWVRKLYADVYAETGGVPVPNDVSDGAYINYPDSDLA--DP 481
Query: 497 GYTSIEQASIWGNKYFKNNFKRLVHVKTMADPHNFFRNEQSIPP 540
G + W + Y+K N RL VK DP N F + SI P
Sbjct: 482 GLNT--SGVPWHDLYYKGNHPRLRKVKAAYDPRNHFHHALSIRP 523
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 99 QVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKISVDAKQKTAWVQS 158
QV A++ + + G ++ VRSGGH FE V V+ID+ L +I+ D ++
Sbjct: 69 QVADAVEETVRTGKRVAVRSGGHCFEDFVDNPDV-KVIIDMSLLTEIAYDPSMNAFLIEP 127
Query: 159 GATLGQLYYRI 169
G TL ++Y ++
Sbjct: 128 GNTLSEVYEKL 138
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y08|B Chain B, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y3R|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|C Chain C, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|D Chain D, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3S|A Chain A, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y3S|B Chain B, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y4G|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
pdb|2Y4G|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
Length = 530
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 71/167 (42%), Gaps = 15/167 (8%)
Query: 384 KAKADYVKQPIPENAFEGIYDKFY--EEEGETAFIVLVPYGGKMSEISESETPFPHRAGN 441
K KA Y ++ + +Y + + + + L+ YGGK++ + T R +
Sbjct: 368 KIKAAYARRSFDDRQIGTLYTRLTSTDYDNPAGVVALIAYGGKVNAVPADRTAVAQR-DS 426
Query: 442 LYKIFYGVSWGGDGISQRHIDWIRSLYSYM------TPYVSKNPREAYVNYRDLDIGINN 495
+ KI Y +W H+ WIR LY + P AYVNY D+D+
Sbjct: 427 ILKIVYVTTWEDPAQDPVHVRWIRELYRDVYADTGGVPVPGGAADGAYVNYPDVDLADEE 486
Query: 496 PGYTSIEQASIWGNKYFKNNFKRLVHVKTMADPHNFFRNEQS--IPP 540
+ + W Y+K+ + RL VK DP N FR+ S +PP
Sbjct: 487 WNTSGVP----WSELYYKDAYPRLQAVKARWDPRNVFRHALSVRVPP 529
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 76 QNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFV 135
+NLRF P+ I ++++ + + + G ++ VRSGGH +E S V V
Sbjct: 51 ENLRF----VGDPEEIHLVGSAAEIEQVLSRAVRSGKRVAVRSGGHCYEDFVANSDV-RV 105
Query: 136 VIDLINLCKISVDAKQKTAWVQSGATLGQLY 166
V+D+ L + D ++ V++GATLG +Y
Sbjct: 106 VMDMSRLSAVGFDEERGAFAVEAGATLGAVY 136
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 104/470 (22%), Positives = 178/470 (37%), Gaps = 52/470 (11%)
Query: 88 PQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCK-IS 146
P I + +Q+A++C+KK L++ +SGGH + + +++ L + IS
Sbjct: 37 PTAIAQTQTTAHIQSAVQCAKKLNLKVSAKSGGHSYASFGFGGENGHLMVQLDRMIDVIS 96
Query: 147 VDAKQKTAWVQSGATLGQLYYRIAEKSKNLXXXXXXXXXXXXXXXXXXXXXXIMLRKFGL 206
+ K A V+ GA LG L + +K GL
Sbjct: 97 YNDKTGIAHVEPGARLGHLATVLNDKYGR-AISHGTCPGVGISGHFAHGGFGFSSHMHGL 155
Query: 207 AADNIVDAHLIDAHGRLLDRKSM-GEDLFWXXXXXXXXXXXXXXXWKLRLVTVPSTVTRF 265
A D++V ++ A GR+++ + DLFW WKL P +TRF
Sbjct: 156 AVDSVVGVTVVLADGRIVEASATENADLFWGIKGAGSNFGIVAV-WKLATFPAPKVLTRF 214
Query: 266 TITRTLEQNATKIVHKWQYVANNLHEDLVIEVGLIKMNXXXXXXXXXXXXGGVDRLL--- 322
+T +N T + + V ED V ++N G++ L
Sbjct: 215 GVTLNW-KNKTSALKGIEAV-----EDYARWVAPREVNFRIGDYGAGNP--GIEGLYYGT 266
Query: 323 ---------PLMQESFPELGLRKDDCTEMSWIESVHNLAGFDKGQSLDLLLDRNARSNGL 373
PL+ ++ P G + T ++WIESV + + FD + N + L
Sbjct: 267 PEQWRAAFQPLL-DTLPA-GYVVNPTTSLNWIESVLSYSNFDHVDFITPQPVENFYAKSL 324
Query: 374 VVKSTTKSPFKAKADYVKQPIPENAFEGIYDKFYEEEGETAFIVLVPYGGKMSEISE--- 430
+KS K DY + + D+F+ F L +GGK S++++
Sbjct: 325 TLKSIKGDAVKNFVDYY-----FDVSNKVKDRFW-------FYQLDVHGGKNSQVTKVTN 372
Query: 431 SETPFPHRAGNLYKIFYGVSWGGDGISQRHIDWIRSLYSYMTPYVSKNPREAYVNYRDLD 490
+ET +PHR FY + ++ + +T + K+ Y+NY D
Sbjct: 373 AETAYPHRDKLWLIQFYDRYDNNQTYPETSFKFLDGWVNSVTKALPKSDWGMYINYADPR 432
Query: 491 IGINNPGYTSIEQASIWGNKYFKNNFKRLVHVKTMADPHNFFRNEQSIPP 540
+ + Y + Y+ N RL +K DP + F Q++ P
Sbjct: 433 M---DRDYAT--------KVYYGENLARLQKLKAKFDPTDRFYYPQAVRP 471
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|B Chain B, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|C Chain C, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|D Chain D, Crystal Structure Of Aclacinomycin Oxidoreductase
Length = 521
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 71/163 (43%), Gaps = 11/163 (6%)
Query: 384 KAKADYVKQPIPENAFEGIYDKFYEEEGETAFIVLVPYGGKMSEISESETPFPHRAGNLY 443
K+K Y+++P +Y + + L YGGK++ + E+ T R ++
Sbjct: 362 KSKGAYLRKPWTAAQAATLYRHLSADSQVWGEVSLYSYGGKVNSVPETATATAQR-DSII 420
Query: 444 KIFYGVSWGGDGISQRHIDWIRSLYSYM------TPYVSKNPREAYVNYRDLDIGINNPG 497
K++ +W ++ WIR +Y + P ++NY D+D+ ++
Sbjct: 421 KVWMSATWMDPAHDDANLAWIREIYREIFATTGGVPVPDDRTEGTFINYPDVDL-VDERW 479
Query: 498 YTSIEQASIWGNKYFKNNFKRLVHVKTMADPHNFFRNEQSIPP 540
TS W Y+K N+ RL VK DP + FR+ S+ P
Sbjct: 480 NTS---GVPWYTLYYKGNYPRLQKVKARWDPRDVFRHALSVRP 519
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 87 KPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKIS 146
+P V+ QV A+ + G +I VRSGGH FEG V VID+ + ++
Sbjct: 55 RPDVVYVVHTADQVVDAVNQAMAAGQRIAVRSGGHCFEGFVDDPAV-RAVIDMSQMRQVF 113
Query: 147 VDAKQKTAWVQSGATLGQLY 166
D+ ++ V+ GATLG+ Y
Sbjct: 114 YDSGKRAFAVEPGATLGETY 133
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVF|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVG|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVH|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
Length = 459
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 13/154 (8%)
Query: 87 KPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKIS 146
+P +I L V +++ + GL+I VRSGGH+ G Y ++ +V+DL + I
Sbjct: 38 RPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNG--YATNDGGIVLDLRLMNSIH 95
Query: 147 VDAKQKTAWVQSGATLGQLYYRIAEKSK-NLXXXXXXXXXXXXXXXXXXXXXXIMLRKFG 205
+D A + G G L + E +K L + K+G
Sbjct: 96 IDTAGSRARIGGGVISGDL---VKEAAKFGLAAVTGMHPKVGFCGLALNGGVGFLTPKYG 152
Query: 206 LAADNIVDAHLIDAHGRLL----DRKSMGEDLFW 235
LA+DNI+ A L+ A G ++ D + +LFW
Sbjct: 153 LASDNILGATLVTATGDVIYCSDDERP---ELFW 183
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|B Chain B, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|C Chain C, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|D Chain D, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3PQB|A Chain A, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|B Chain B, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|C Chain C, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|D Chain D, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
Length = 501
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 11/137 (8%)
Query: 408 EEEGETAFIVLVPYGGKMSEISESETPFPHRAGNLYKIFYGVSWGGDGISQRHIDWIRSL 467
+ G+ ++++ YGG+++ S+ P R ++ K + +W + + H+ W+R L
Sbjct: 368 DHPGQASYVMFNSYGGEINRRGPSDAAVPQR-DSVVKSSWFSAWQDAELDELHLGWLRGL 426
Query: 468 YSYM------TPYVSKNPREAYVNYRDLDIGINNPGYTSIEQASIWGNKYFKNNFKRLVH 521
Y P Y+NY D D + +P W + Y+K+N+ RL
Sbjct: 427 YEEFFAGTGGVPVTGGRTDGCYINYPDAD--LLDPARN--RSGEPWHHLYYKDNYARLRS 482
Query: 522 VKTMADPHNFFRNEQSI 538
K DP N F + SI
Sbjct: 483 AKRAWDPLNTFHHSMSI 499
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 87 KPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGH---DFEGLSYVSHVPFVVIDLINLC 143
+P+ P V A+++ + +G + RSGGH DF G +V+DL NL
Sbjct: 34 EPEEFFLPATPDDVVASLQKAVTEGRGVACRSGGHCGQDFVGTPRRD----LVLDLHNLH 89
Query: 144 KISVDAKQKTAWVQSGATLGQL 165
I A V SGAT+ Q+
Sbjct: 90 AIGPAADGAGVRVGSGATVDQV 111
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl
Fad In Glucooligosaccharide Oxidase From Acremonium
Strictum
Length = 503
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 84/465 (18%), Positives = 168/465 (36%), Gaps = 41/465 (8%)
Query: 88 PQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKISV 147
P I P + AA++C G+QI + GGH + + ++++L + ++SV
Sbjct: 43 PAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGHLMLELDRMYRVSV 102
Query: 148 DAKQKTAWVQSGATLGQLYYRIAEKSKNLXXXXXXXXXXXXXXXXXXXXXXIMLRKFGLA 207
D A +Q GA LG + ++ N GL
Sbjct: 103 D-DNNVATIQGGARLGYTALELLDQG-NRALSHGTAPAVGVGGHVLGGGYGFATHTHGLT 160
Query: 208 ADNIVDAHLIDAHGRLLD-RKSMGEDLFWXXXXXXXXXXXXXXXWKLRLVTVPSTVTRFT 266
D ++ A ++ A ++ ++ DLFW ++ P +T +
Sbjct: 161 LDWLIGATVVLADASIVHVSETENADLFW-ALRGGGGGFAIVSEFEFNTFEAPEIITTYQ 219
Query: 267 ITRTL--EQNATKIVHKWQYVANNLHEDLVIEVGLIKMNXXXXXXXXXXXXGGVDRLL-P 323
+T T +Q+ + + N + +L + + I N + ++L P
Sbjct: 220 VTTTWNRKQHVAGLKALQDWAQNTMPRELSMRLE-INANALNWEGNFFGNAKDLKKILQP 278
Query: 324 LMQESFPELGLRKDDCTEMSWIESVHN-LAGFDKGQSLDLLLDRNARSNGLVVKSTTKSP 382
+M+++ + + K E W ++ L G D + + + +N L +
Sbjct: 279 IMKKAGGKSTISK--LVETDWYGQINTYLYGADLNITYNYDVHEYFYANSLTAPRLSDEA 336
Query: 383 FKAKADYVKQPIPENAFEGIYDKFYEEEGETAFIVLVPYGGK---MSEISESETPFPHRA 439
+A DY +D G +I +GGK ++ +S ET + HR
Sbjct: 337 IQAFVDYK------------FDNSSVRPGRGWWIQWDFHGGKNSALAAVSNDETAYAHRD 384
Query: 440 G----NLYKIFYGVSWGGDGISQRHIDWIRSLYSYMTPYVSKNPREAYVNYRDLDIGINN 495
Y Y + ++++ + + + ++ + Y NY D +
Sbjct: 385 QLWLWQFYDSIYDYENNTSPYPESGFEFMQGFVATIEDTLPEDRKGKYFNYADTTL---- 440
Query: 496 PGYTSIEQASIWGNKYFKNNFKRLVHVKTMADPHNFFRNEQSIPP 540
+ E+A Y++ N ++L +K DP + F N S+ P
Sbjct: 441 ----TKEEAQ---KLYWRGNLEKLQAIKAKYDPEDVFGNVVSVEP 478
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum
Glucooligosaccharide Oxidase Reveals A Novel
Flavinylation
pdb|2AXR|A Chain A, Crystal Structure Of Glucooligosaccharide Oxidase From
Acremonium Strictum: A Novel Flavinylation Of
6-S-Cysteinyl, 8alpha-N1-Histidyl Fad
Length = 503
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 84/465 (18%), Positives = 168/465 (36%), Gaps = 41/465 (8%)
Query: 88 PQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKISV 147
P I P + AA++C G+QI + GGH + + ++++L + ++SV
Sbjct: 43 PAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGHLMLELDRMYRVSV 102
Query: 148 DAKQKTAWVQSGATLGQLYYRIAEKSKNLXXXXXXXXXXXXXXXXXXXXXXIMLRKFGLA 207
D A +Q GA LG + ++ N GL
Sbjct: 103 D-DNNVATIQGGARLGYTALELLDQG-NRALSHGTCPAVGVGGHVLGGGYGFATHTHGLT 160
Query: 208 ADNIVDAHLIDAHGRLLD-RKSMGEDLFWXXXXXXXXXXXXXXXWKLRLVTVPSTVTRFT 266
D ++ A ++ A ++ ++ DLFW ++ P +T +
Sbjct: 161 LDWLIGATVVLADASIVHVSETENADLFW-ALRGGGGGFAIVSEFEFNTFEAPEIITTYQ 219
Query: 267 ITRTL--EQNATKIVHKWQYVANNLHEDLVIEVGLIKMNXXXXXXXXXXXXGGVDRLL-P 323
+T T +Q+ + + N + +L + + I N + ++L P
Sbjct: 220 VTTTWNRKQHVAGLKALQDWAQNTMPRELSMRLE-INANALNWEGNFFGNAKDLKKILQP 278
Query: 324 LMQESFPELGLRKDDCTEMSWIESVHN-LAGFDKGQSLDLLLDRNARSNGLVVKSTTKSP 382
+M+++ + + K E W ++ L G D + + + +N L +
Sbjct: 279 IMKKAGGKSTISK--LVETDWYGQINTYLYGADLNITYNYDVHEYFYANSLTAPRLSDEA 336
Query: 383 FKAKADYVKQPIPENAFEGIYDKFYEEEGETAFIVLVPYGGK---MSEISESETPFPHRA 439
+A DY +D G +I +GGK ++ +S ET + HR
Sbjct: 337 IQAFVDYK------------FDNSSVRPGRGWWIQWDFHGGKNSALAAVSNDETAYAHRD 384
Query: 440 G----NLYKIFYGVSWGGDGISQRHIDWIRSLYSYMTPYVSKNPREAYVNYRDLDIGINN 495
Y Y + ++++ + + + ++ + Y NY D +
Sbjct: 385 QLWLWQFYDSIYDYENNTSPYPESGFEFMQGFVATIEDTLPEDRKGKYFNYADTTL---- 440
Query: 496 PGYTSIEQASIWGNKYFKNNFKRLVHVKTMADPHNFFRNEQSIPP 540
+ E+A Y++ N ++L +K DP + F N S+ P
Sbjct: 441 ----TKEEAQ---KLYWRGNLEKLQAIKAKYDPEDVFGNVVSVEP 478
>pdb|1WVE|A Chain A, P-Cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
pdb|1WVE|B Chain B, P-Cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
pdb|1WVF|A Chain A, P-cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
Length = 520
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 88 PQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPF----VVIDLINLC 143
P +T V QVQ +K + + I S G +F Y S P V++DL +
Sbjct: 57 PSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNF---GYGSAAPVQRGQVILDLKKMN 113
Query: 144 KI-SVDAKQKTAWVQSGATLGQLYYRIAE 171
KI +D + A V+ G T GQ+Y I E
Sbjct: 114 KIIKIDPEMCYALVEPGVTFGQMYDYIQE 142
>pdb|1DII|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A
Resolution
pdb|1DII|B Chain B, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A
Resolution
pdb|1DIQ|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase With
Substrate Bound
pdb|1DIQ|B Chain B, Crystal Structure Of P-Cresol Methylhydroxylase With
Substrate Bound
Length = 521
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 88 PQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPF----VVIDLINLC 143
P +T V QVQ +K + + I S G +F Y S P V++DL +
Sbjct: 58 PSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNF---GYGSAAPVQRGQVILDLKKMN 114
Query: 144 KI-SVDAKQKTAWVQSGATLGQLYYRIAE 171
KI +D + A V+ G T GQ+Y I E
Sbjct: 115 KIIKIDPEMCYALVEPGVTFGQMYDYIQE 143
>pdb|2WP4|A Chain A, Crystal Structure Of Rv3119 From Mycobacterium
Tuberculosis
pdb|2WP4|B Chain B, Crystal Structure Of Rv3119 From Mycobacterium
Tuberculosis
Length = 147
Score = 30.0 bits (66), Expect = 3.4, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 94 PLDVSQVQAAIKCSKKQGL-----QIRVRSGGHDFEGLSYVSHVPFVVIDLINL 142
PL V +V AA+ ++ G+ +R + GHD L Y ++ P V+ L+++
Sbjct: 19 PLSVDEVLAAVSGPEQGGIVIFVGNVRDHNAGHDVTRLFYEAYPPMVIRTLMSI 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,312,879
Number of Sequences: 62578
Number of extensions: 589611
Number of successful extensions: 1327
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1223
Number of HSP's gapped (non-prelim): 28
length of query: 551
length of database: 14,973,337
effective HSP length: 104
effective length of query: 447
effective length of database: 8,465,225
effective search space: 3783955575
effective search space used: 3783955575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)