Query 039163
Match_columns 551
No_of_seqs 365 out of 2319
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 06:55:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039163.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039163hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02441 cytokinin dehydrogena 100.0 5.3E-40 1.2E-44 350.7 44.1 204 56-271 40-254 (525)
2 TIGR01678 FAD_lactone_ox sugar 100.0 1.2E-32 2.6E-37 292.3 34.6 196 80-287 7-205 (438)
3 TIGR01679 bact_FAD_ox FAD-link 100.0 3E-31 6.4E-36 281.4 35.3 173 80-261 4-178 (419)
4 COG0277 GlcD FAD/FMN-containin 100.0 7.8E-32 1.7E-36 291.1 27.9 185 84-271 28-219 (459)
5 PLN02805 D-lactate dehydrogena 100.0 3.4E-32 7.5E-37 295.1 23.2 191 86-280 132-329 (555)
6 TIGR01676 GLDHase galactonolac 100.0 1.2E-31 2.6E-36 286.3 22.8 195 80-286 54-251 (541)
7 PRK11230 glycolate oxidase sub 100.0 4.7E-31 1E-35 284.8 23.5 195 84-280 52-252 (499)
8 KOG1231 Proteins containing th 100.0 3.2E-30 6.9E-35 259.8 27.4 178 80-260 56-240 (505)
9 TIGR01677 pln_FAD_oxido plant- 100.0 7.7E-31 1.7E-35 283.9 23.4 179 80-261 24-214 (557)
10 TIGR00387 glcD glycolate oxida 100.0 2.4E-29 5.2E-34 267.1 20.2 189 91-281 1-196 (413)
11 PRK11282 glcE glycolate oxidas 100.0 3.7E-29 8E-34 256.8 20.1 169 96-269 3-180 (352)
12 PLN02465 L-galactono-1,4-lacto 100.0 8E-28 1.7E-32 259.0 23.4 176 79-261 88-266 (573)
13 PF01565 FAD_binding_4: FAD bi 99.9 9.2E-27 2E-31 210.4 13.4 136 88-225 1-137 (139)
14 PRK13905 murB UDP-N-acetylenol 99.9 4.1E-24 8.9E-29 216.9 13.2 162 85-259 28-193 (298)
15 PRK11183 D-lactate dehydrogena 99.9 2.3E-22 5E-27 211.9 18.3 192 85-282 36-289 (564)
16 PRK12436 UDP-N-acetylenolpyruv 99.9 2.2E-21 4.8E-26 196.6 13.9 162 84-258 33-197 (305)
17 KOG4730 D-arabinono-1, 4-lacto 99.9 6.6E-21 1.4E-25 192.7 17.0 182 80-267 42-226 (518)
18 TIGR00179 murB UDP-N-acetyleno 99.9 4.2E-21 9E-26 193.0 13.5 162 85-257 10-174 (284)
19 PRK13903 murB UDP-N-acetylenol 99.8 1.1E-20 2.3E-25 194.5 15.6 163 85-259 30-197 (363)
20 PRK14652 UDP-N-acetylenolpyruv 99.8 7.8E-21 1.7E-25 192.2 14.2 163 84-259 32-196 (302)
21 KOG1232 Proteins containing th 99.8 3.9E-20 8.4E-25 182.7 17.5 187 76-264 78-271 (511)
22 PRK13906 murB UDP-N-acetylenol 99.8 2.2E-20 4.8E-25 189.4 13.7 160 86-257 35-196 (307)
23 KOG1233 Alkyl-dihydroxyacetone 99.8 5.6E-18 1.2E-22 167.7 16.4 191 80-271 153-352 (613)
24 PRK14649 UDP-N-acetylenolpyruv 99.8 2.3E-18 4.9E-23 173.9 13.3 163 86-258 19-192 (295)
25 PRK14653 UDP-N-acetylenolpyruv 99.7 5.3E-17 1.2E-21 163.3 13.0 158 87-259 33-194 (297)
26 COG0812 MurB UDP-N-acetylmuram 99.7 1.1E-15 2.3E-20 151.0 14.3 164 84-258 17-183 (291)
27 PRK14650 UDP-N-acetylenolpyruv 99.6 1.6E-15 3.4E-20 152.2 12.8 161 86-259 31-195 (302)
28 PF08031 BBE: Berberine and be 99.6 1.4E-16 3E-21 115.0 3.2 47 482-539 1-47 (47)
29 PRK00046 murB UDP-N-acetylenol 99.6 2.6E-15 5.7E-20 152.8 12.0 159 87-258 20-188 (334)
30 PRK14648 UDP-N-acetylenolpyruv 99.6 1.5E-14 3.3E-19 147.0 13.7 162 86-258 28-236 (354)
31 KOG1262 FAD-binding protein DI 99.6 4.9E-15 1.1E-19 147.3 9.1 169 93-263 59-233 (543)
32 PRK14651 UDP-N-acetylenolpyruv 99.4 1.5E-12 3.3E-17 128.9 11.9 148 87-258 20-170 (273)
33 PRK13904 murB UDP-N-acetylenol 99.1 3.7E-10 8E-15 111.0 9.6 141 87-259 18-160 (257)
34 PF00941 FAD_binding_5: FAD bi 94.7 0.043 9.4E-07 51.2 4.7 77 88-168 2-80 (171)
35 PF09265 Cytokin-bind: Cytokin 94.6 0.075 1.6E-06 53.2 6.3 33 505-538 248-280 (281)
36 PRK09799 putative oxidoreducta 94.3 0.13 2.8E-06 51.3 7.3 140 90-254 4-155 (258)
37 TIGR03312 Se_sel_red_FAD proba 93.0 0.28 6.1E-06 48.9 7.1 140 91-254 4-154 (257)
38 TIGR02963 xanthine_xdhA xanthi 92.0 0.38 8.3E-06 52.2 7.2 152 88-255 192-358 (467)
39 PLN00107 FAD-dependent oxidore 90.0 1 2.2E-05 44.3 7.2 22 514-535 176-197 (257)
40 PRK09971 xanthine dehydrogenas 89.9 0.47 1E-05 48.2 5.0 73 90-167 6-82 (291)
41 TIGR03195 4hydrxCoA_B 4-hydrox 89.3 0.7 1.5E-05 47.5 5.8 98 90-194 6-116 (321)
42 TIGR03199 pucC xanthine dehydr 86.8 0.82 1.8E-05 45.7 4.5 97 94-195 1-109 (264)
43 PF02913 FAD-oxidase_C: FAD li 85.6 1.4 3E-05 42.9 5.3 76 443-534 169-245 (248)
44 PF04030 ALO: D-arabinono-1,4- 82.8 2.7 5.8E-05 41.8 6.1 22 514-535 233-254 (259)
45 PLN02906 xanthine dehydrogenas 81.9 2.1 4.5E-05 52.6 5.7 79 89-171 229-309 (1319)
46 PLN00192 aldehyde oxidase 79.2 4.3 9.3E-05 50.0 7.2 83 88-171 233-316 (1344)
47 TIGR02969 mam_aldehyde_ox alde 78.9 4.5 9.7E-05 49.7 7.2 78 89-170 237-316 (1330)
48 TIGR00387 glcD glycolate oxida 69.2 4.4 9.4E-05 43.4 3.4 29 506-534 382-411 (413)
49 PLN02805 D-lactate dehydrogena 69.1 8.2 0.00018 42.9 5.6 35 505-539 515-550 (555)
50 TIGR01677 pln_FAD_oxido plant- 67.5 10 0.00022 42.2 5.9 22 514-535 482-503 (557)
51 COG1319 CoxM Aerobic-type carb 66.1 20 0.00043 36.2 7.2 75 88-166 3-80 (284)
52 COG4630 XdhA Xanthine dehydrog 64.8 15 0.00033 38.1 6.0 139 88-238 203-352 (493)
53 COG4981 Enoyl reductase domain 59.7 23 0.00051 38.5 6.5 105 44-163 113-225 (717)
54 PRK11230 glycolate oxidase sub 56.3 15 0.00032 40.5 4.6 31 509-539 442-473 (499)
55 KOG4730 D-arabinono-1, 4-lacto 54.8 6.4 0.00014 41.7 1.4 21 514-534 485-505 (518)
56 PRK11282 glcE glycolate oxidas 46.2 13 0.00028 38.9 2.1 22 513-534 323-345 (352)
57 COG1519 KdtA 3-deoxy-D-manno-o 35.1 1.9E+02 0.0042 30.8 8.6 34 87-120 260-293 (419)
58 KOG3282 Uncharacterized conser 34.6 49 0.0011 30.9 3.7 37 78-116 117-153 (190)
59 COG0351 ThiD Hydroxymethylpyri 32.0 1.9E+02 0.0042 28.9 7.6 92 56-174 132-226 (263)
60 PF02601 Exonuc_VII_L: Exonucl 28.8 76 0.0016 32.5 4.5 58 57-121 18-87 (319)
61 TIGR00178 monomer_idh isocitra 28.7 3.3E+02 0.0071 30.4 9.1 130 97-238 312-460 (741)
62 COG4359 Uncharacterized conser 28.6 60 0.0013 30.6 3.2 25 100-124 78-102 (220)
63 TIGR01676 GLDHase galactonolac 26.2 41 0.00089 37.2 2.0 20 516-535 515-534 (541)
64 PLN02465 L-galactono-1,4-lacto 25.7 39 0.00085 37.7 1.8 27 506-535 538-564 (573)
65 cd07033 TPP_PYR_DXS_TK_like Py 23.1 1.2E+02 0.0026 27.5 4.2 30 89-118 125-154 (156)
66 PRK04322 peptidyl-tRNA hydrola 23.0 1.9E+02 0.0042 24.8 5.2 41 80-122 42-83 (113)
67 PF14658 EF-hand_9: EF-hand do 22.3 59 0.0013 25.2 1.7 15 517-531 35-49 (66)
68 COG3360 Uncharacterized conser 22.2 1.5E+02 0.0033 22.9 3.8 37 207-257 33-69 (71)
69 PF10740 DUF2529: Protein of u 22.0 2.1E+02 0.0045 26.6 5.4 71 88-161 84-155 (172)
70 cd02429 PTH2_like Peptidyl-tRN 21.9 1.7E+02 0.0037 25.3 4.6 31 87-117 55-85 (116)
71 PF04472 DUF552: Protein of un 20.8 1.1E+02 0.0023 23.9 3.0 33 90-144 2-34 (73)
72 PF09875 DUF2102: Uncharacteri 20.2 72 0.0016 26.9 1.9 32 514-545 42-73 (104)
No 1
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=5.3e-40 Score=350.73 Aligned_cols=204 Identities=19% Similarity=0.282 Sum_probs=176.0
Q ss_pred ceeEecCCCCChhhhhhccccccCcCCCCCCCceEEEecCCHHHHHHHHHHHH--hcCCcEEEEcCCCCCCCCccccCCC
Q 039163 56 SQVIYTKYSPSYSSVLSSSTQNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSK--KQGLQIRVRSGGHDFEGLSYVSHVP 133 (551)
Q Consensus 56 ~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~--~~~~~~~~~ggGh~~~g~~~~~~~~ 133 (551)
.+.+. -++..+..+. ..|+......|.+|++|+|++||+++|++|+ +++++|++||+|||+.|.+...+
T Consensus 40 ~~~v~-~d~~~~~~~s------~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~~-- 110 (525)
T PLN02441 40 DGHLS-FDPVSTASAS------KDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAPG-- 110 (525)
T ss_pred CceEE-eCHHHHHHHh------cCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCCC--
Confidence 44443 3344555442 2487777789999999999999999999997 67999999999999998887654
Q ss_pred EEEEEeeCCcc-------eEEcCCCCEEEEcCCCCHHHHHHHHHHhcCCcccCC-CCCCcccccccccCCCCCCcccccC
Q 039163 134 FVVIDLINLCK-------ISVDAKQKTAWVQSGATLGQLYYRIAEKSKNLGFPG-GVCPTVGVGGHFSGGGYGIMLRKFG 205 (551)
Q Consensus 134 gvvidl~~l~~-------i~id~~~~~v~v~~G~~~~~l~~~l~~~g~~l~~~~-g~~~~vgvgG~~~gGg~g~~~~~~G 205 (551)
|++|||++||+ +++|.+..+|+|++|++|.++++++.++| ++.+. +.+..++|||.+++||+|..+.+||
T Consensus 111 GivIdms~Ln~i~~~~~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~G--laP~~~~d~~~~TVGG~ist~G~gg~s~ryG 188 (525)
T PLN02441 111 GVVVDMRSLRGGVRGPPVIVVSGDGPYVDVSGGELWIDVLKATLKHG--LAPRSWTDYLYLTVGGTLSNAGISGQAFRHG 188 (525)
T ss_pred eEEEECCCCCCcCccCceEEEcCCCCEEEEcCCCCHHHHHHHHHHCC--CccCCccccCceEEeEEcCCCCccccccccC
Confidence 99999999999 37888899999999999999999999986 44333 6667789999999999999999999
Q ss_pred chhhheeeEEEEecCcceee-ccCCCchhhhhhhcccCCCceEEEEEEEEEEecCceEEEEEEeecc
Q 039163 206 LAADNIVDAHLIDAHGRLLD-RKSMGEDLFWAIRGGGGASFGVVVAWKLRLVTVPSTVTRFTITRTL 271 (551)
Q Consensus 206 ~~~D~v~~~~vV~a~G~iv~-~~~~~~dLf~a~rG~g~g~fGiVt~~~~~~~p~~~~~~~~~~~~~~ 271 (551)
..+|+|+++|||++||++++ ++.+|+|||||++||+ |+|||||++++|++|.|+.+.+..+.|..
T Consensus 189 ~~~d~Vl~leVVtadGevv~~s~~~n~DLF~Av~Ggl-G~fGIIT~atlrL~Pap~~v~~~~~~y~~ 254 (525)
T PLN02441 189 PQISNVLELDVVTGKGEVVTCSPTQNSDLFFAVLGGL-GQFGIITRARIALEPAPKRVRWIRVLYSD 254 (525)
T ss_pred cHHHhEEEEEEEeCCceEEEeCCCCChhHHHhhccCC-CCcEEEEEEEEEEEecCCceEEEEEEcCC
Confidence 99999999999999999997 7778999999999997 89999999999999999977776676654
No 2
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=1.2e-32 Score=292.30 Aligned_cols=196 Identities=22% Similarity=0.352 Sum_probs=169.9
Q ss_pred cCCCCCCCceEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEeeCCcce-EEcCCCCEEEEcC
Q 039163 80 FSTPNTPKPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKI-SVDAKQKTAWVQS 158 (551)
Q Consensus 80 ~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvidl~~l~~i-~id~~~~~v~v~~ 158 (551)
|+......|.+|+.|+|++||+++|++|++++++++++|+|||+.+.... + +++|||++||+| ++|+++++|+|+|
T Consensus 7 W~~~~~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~GhS~s~~~~~-~--gvvIdl~~l~~i~~id~~~~~vtV~a 83 (438)
T TIGR01678 7 WAKTYSASPEVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPSDIACT-D--GFLIHLDKMNKVLQFDKEKKQITVEA 83 (438)
T ss_pred CCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEECCCCCCCCCccC-C--eEEEEhhhcCCceEEcCCCCEEEEcC
Confidence 77777889999999999999999999999999999999999999876553 3 899999999997 9999999999999
Q ss_pred CCCHHHHHHHHHHhcCCcccC-CCCCCcccccccccCCCCCCcccccCchhhheeeEEEEecCcceee-ccCCCchhhhh
Q 039163 159 GATLGQLYYRIAEKSKNLGFP-GGVCPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDAHGRLLD-RKSMGEDLFWA 236 (551)
Q Consensus 159 G~~~~~l~~~l~~~g~~l~~~-~g~~~~vgvgG~~~gGg~g~~~~~~G~~~D~v~~~~vV~a~G~iv~-~~~~~~dLf~a 236 (551)
|+++.+|.+.|.++| +.++ .|.++.++|||.+++|++|. +.+||..+|+|++++||++||++++ +..+++|||||
T Consensus 84 G~~l~~L~~~L~~~G--l~l~~~g~~~~~TvGG~iatg~hG~-~~~~G~~~d~V~~l~vV~~~G~i~~~s~~~~~dlf~a 160 (438)
T TIGR01678 84 GIRLYQLHEQLDEHG--YSMSNLGSISEVSVAGIISTGTHGS-SIKHGILATQVVALTIMTADGEVLECSEERNADVFQA 160 (438)
T ss_pred CCCHHHHHHHHHHcC--CEecCCCCCCCceeeehhcCCCCCC-ccccCcHHhhEEEEEEEcCCCcEEEeCCCCChhHHHH
Confidence 999999999999986 4555 48888999999999999996 6899999999999999999999997 66678999999
Q ss_pred hhcccCCCceEEEEEEEEEEecCceEEEEEEeecchhhHHHHHHHHHHHHh
Q 039163 237 IRGGGGASFGVVVAWKLRLVTVPSTVTRFTITRTLEQNATKIVHKWQYVAN 287 (551)
Q Consensus 237 ~rG~g~g~fGiVt~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (551)
.+||. |+|||||++|||++|....... ... ....++++.|++...
T Consensus 161 ~~~~~-G~lGIIt~vtl~l~p~~~l~~~--~~~---~~~~~~~~~~~~~~~ 205 (438)
T TIGR01678 161 ARVSL-GCLGIIVTVTIQVVPQFHLQET--SFV---STLKELLDNWDSHWK 205 (438)
T ss_pred HhcCC-CceEeeEEEEEEEEeccceEEE--Eec---CCHHHHHHHHHHHhh
Confidence 99998 8999999999999998753322 111 224566777766543
No 3
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=100.00 E-value=3e-31 Score=281.40 Aligned_cols=173 Identities=25% Similarity=0.380 Sum_probs=153.5
Q ss_pred cCCCCCCCceEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEeeCCcce-EEcCCCCEEEEcC
Q 039163 80 FSTPNTPKPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKI-SVDAKQKTAWVQS 158 (551)
Q Consensus 80 ~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvidl~~l~~i-~id~~~~~v~v~~ 158 (551)
|+......|.+|++|+|++||+++|++|++ +++++|+|||+.+.... + +++|||++||+| ++|+++++|+|||
T Consensus 4 W~~~~~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~G~Ghs~~~~~~~-~--g~~idl~~l~~i~~~d~~~~~v~v~a 77 (419)
T TIGR01679 4 WSGEQVAAPSAIVRPTDEGELADVIAQAAK---PVRAVGSGHSFTDLACT-D--GTMISLTGLQGVVDVDQPTGLATVEA 77 (419)
T ss_pred CCCCccCCCCeEECCCCHHHHHHHHHHhCC---CEEEEeCCCCCCCcccC-C--CEEEEhhHcCCceeecCCCCEEEEcC
Confidence 877777899999999999999999999974 79999999999876543 3 799999999997 9999999999999
Q ss_pred CCCHHHHHHHHHHhcCCcccCCCCCCcccccccccCCCCCCcccccCchhhheeeEEEEecCcceee-ccCCCchhhhhh
Q 039163 159 GATLGQLYYRIAEKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDAHGRLLD-RKSMGEDLFWAI 237 (551)
Q Consensus 159 G~~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G~~~D~v~~~~vV~a~G~iv~-~~~~~~dLf~a~ 237 (551)
|+++.+|.+.|.++|+.+... |.+..++|||.+.+|++|.. ..||..+|+|++++||++||++++ ++.+|+|||||+
T Consensus 78 G~~l~~l~~~L~~~G~~l~~~-~~~~~~tvGG~ia~~~hG~g-~~~G~~~d~V~~l~vV~a~G~v~~~~~~~~~dLf~a~ 155 (419)
T TIGR01679 78 GTRLGALGPQLAQRGLGLENQ-GDIDPQSIGGALGTATHGTG-VRFQALHARIVSLRLVTAGGKVLDLSEGDDQDMYLAA 155 (419)
T ss_pred CCCHHHHHHHHHHcCCccccC-CCCCCceeccceecCCCCCC-ccCCchhhhEEEEEEEcCCCCEEEEcCCCCHHHHHHH
Confidence 999999999999987543322 45556889999999999974 689999999999999999999997 666789999999
Q ss_pred hcccCCCceEEEEEEEEEEecCce
Q 039163 238 RGGGGASFGVVVAWKLRLVTVPST 261 (551)
Q Consensus 238 rG~g~g~fGiVt~~~~~~~p~~~~ 261 (551)
|||+ |+|||||++|||++|.+..
T Consensus 156 ~g~~-G~lGVIt~vtl~~~p~~~~ 178 (419)
T TIGR01679 156 RVSL-GALGVISQVTLQTVALFRL 178 (419)
T ss_pred HhCC-CceEEEEEEEEEeecceEe
Confidence 9998 8999999999999998753
No 4
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=7.8e-32 Score=291.09 Aligned_cols=185 Identities=25% Similarity=0.378 Sum_probs=162.6
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEeeCCcce-EEcCCCCEEEEcCCCCH
Q 039163 84 NTPKPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKI-SVDAKQKTAWVQSGATL 162 (551)
Q Consensus 84 ~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvidl~~l~~i-~id~~~~~v~v~~G~~~ 162 (551)
....|.+|+.|+|++||+++|++|+++++|+++||+||++.|.+... . +|+|||++||+| ++|+++++|+|+||+++
T Consensus 28 ~~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~~~-~-gvvl~l~~mn~i~~id~~~~~~~v~aGv~l 105 (459)
T COG0277 28 YRGLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVPD-G-GVVLDLSRLNRILEIDPEDGTATVQAGVTL 105 (459)
T ss_pred hcCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCccccccCC-C-cEEEEchhhcchhccCcCCCEEEEcCCccH
Confidence 34588999999999999999999999999999999999999887766 2 899999999999 79999999999999999
Q ss_pred HHHHHHHHHhcCCcccCCCCCCcccccccccCCCCCCcccccCchhhheeeEEEEecCcceee--c----cCCCchhhhh
Q 039163 163 GQLYYRIAEKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDAHGRLLD--R----KSMGEDLFWA 236 (551)
Q Consensus 163 ~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G~~~D~v~~~~vV~a~G~iv~--~----~~~~~dLf~a 236 (551)
.+|.++|.++|+.+.+.+++..+++|||.++++++|..+.+||...|+|+++++|++||++++ . +..+.||+++
T Consensus 106 ~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~vV~~dG~i~~~~~~~~k~~~g~dl~~l 185 (459)
T COG0277 106 EDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRVVLPDGEILRLGRKLRKDNAGYDLTAL 185 (459)
T ss_pred HHHHHHHHHcCCccCCCccccccceEccchhcCCCCccceecccHHHheeEEEEEcCCceehhhcCcccCCCCCCCHHHh
Confidence 999999999875444444555579999999999999999999999999999999999999996 2 2345799999
Q ss_pred hhcccCCCceEEEEEEEEEEecCceEEEEEEeecc
Q 039163 237 IRGGGGASFGVVVAWKLRLVTVPSTVTRFTITRTL 271 (551)
Q Consensus 237 ~rG~g~g~fGiVt~~~~~~~p~~~~~~~~~~~~~~ 271 (551)
.-|+. |+|||||++++|++|.|+........+..
T Consensus 186 ~iGs~-GtlGiit~~tl~l~p~~~~~~~~~~~~~~ 219 (459)
T COG0277 186 FVGSE-GTLGIITEATLKLLPLPETKATAVAGFPS 219 (459)
T ss_pred cccCC-ccceEEEEEEEEeccCCchheEEEEeCCC
Confidence 99987 89999999999999998765554554443
No 5
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=3.4e-32 Score=295.08 Aligned_cols=191 Identities=20% Similarity=0.315 Sum_probs=169.0
Q ss_pred CCceEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEeeCCcce-EEcCCCCEEEEcCCCCHHH
Q 039163 86 PKPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKI-SVDAKQKTAWVQSGATLGQ 164 (551)
Q Consensus 86 ~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvidl~~l~~i-~id~~~~~v~v~~G~~~~~ 164 (551)
..|.+||+|+|++||+++|++|+++++|+.+||||||+.|.+...+ ++++|||++||+| ++|+++++|+||||+++.+
T Consensus 132 ~~P~~Vv~P~s~eeV~~ivk~a~~~~ipv~prGgGts~~G~~~~~~-ggivIdl~~mn~I~~id~~~~~vtVeaGv~~~~ 210 (555)
T PLN02805 132 NIPDVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSIEGHTLAPH-GGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLE 210 (555)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCccCCC-CEEEEEccCCCCeEEEeCCCCEEEEeCCcCHHH
Confidence 4799999999999999999999999999999999999988776543 5999999999998 7999999999999999999
Q ss_pred HHHHHHHhcCCcccCCCCCCcccccccccCCCCCCcccccCchhhheeeEEEEecCcceeec--c----CCCchhhhhhh
Q 039163 165 LYYRIAEKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDAHGRLLDR--K----SMGEDLFWAIR 238 (551)
Q Consensus 165 l~~~l~~~g~~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G~~~D~v~~~~vV~a~G~iv~~--~----~~~~dLf~a~r 238 (551)
|+++|.++| +.++...++.++|||.++++++|..+.+||..+|+|+++|||++||++++. . ..++||||+++
T Consensus 211 L~~~L~~~G--l~~p~~p~~~~TIGG~ia~n~~G~~s~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l~~ 288 (555)
T PLN02805 211 LNEYLEPYG--LFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLVI 288 (555)
T ss_pred HHHHHHHcC--CEeCCCCccccChhhHhhCCCcccccCccccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHHhc
Confidence 999999986 567776677889999999999999999999999999999999999999951 1 24689999999
Q ss_pred cccCCCceEEEEEEEEEEecCceEEEEEEeecchhhHHHHHH
Q 039163 239 GGGGASFGVVVAWKLRLVTVPSTVTRFTITRTLEQNATKIVH 280 (551)
Q Consensus 239 G~g~g~fGiVt~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 280 (551)
|+. |+|||||++++|++|.|+......+.|+..+++.+++.
T Consensus 289 Gse-GtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~ 329 (555)
T PLN02805 289 GSE-GTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAI 329 (555)
T ss_pred cCC-CceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHH
Confidence 998 89999999999999999877777777765444544443
No 6
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=100.00 E-value=1.2e-31 Score=286.31 Aligned_cols=195 Identities=19% Similarity=0.281 Sum_probs=169.5
Q ss_pred cCCCCCCCceEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEeeCCcce-EEcCCCCEEEEcC
Q 039163 80 FSTPNTPKPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKI-SVDAKQKTAWVQS 158 (551)
Q Consensus 80 ~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvidl~~l~~i-~id~~~~~v~v~~ 158 (551)
|+.+....|..+++|+|++||+++|+.|++++++|+++|+|||+.+.+... +++|||++||+| ++|+++++|+|+|
T Consensus 54 Wsg~~~~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~GsGhS~sg~a~t~---g~lldL~~ln~Vl~vD~~~~tVtV~A 130 (541)
T TIGR01676 54 WSGTHEVLTRTFHQPEAIEELEGIVKQANEKKARIRPVGSGLSPNGIGLSR---AGMVNLALMDKVLEVDEEKKRVRVQA 130 (541)
T ss_pred cCCccccCcceEECCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCcccCC---CeEEEhhhCCCCEEEcCCCCEEEEcC
Confidence 988888899999999999999999999999999999999999999877754 357999999997 9999999999999
Q ss_pred CCCHHHHHHHHHHhcCCcccCC-CCCCcccccccccCCCCCCcccccCchhhheeeEEEEecCcceee-ccCCCchhhhh
Q 039163 159 GATLGQLYYRIAEKSKNLGFPG-GVCPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDAHGRLLD-RKSMGEDLFWA 236 (551)
Q Consensus 159 G~~~~~l~~~l~~~g~~l~~~~-g~~~~vgvgG~~~gGg~g~~~~~~G~~~D~v~~~~vV~a~G~iv~-~~~~~~dLf~a 236 (551)
|+++.+|.++|.++| ++++. |.+..++|||.+++|++|.. .+||..+|+|++++||+++|++++ +..+++|||||
T Consensus 131 G~~l~~L~~~L~~~G--lal~n~gsi~~~TIGGaiatgtHGtg-~~~G~l~d~V~~l~lVta~G~vv~~s~~~~pdLF~A 207 (541)
T TIGR01676 131 GIRVQQLVDAIKEYG--ITLQNFASIREQQIGGIIQVGAHGTG-AKLPPIDEQVIAMKLVTPAKGTIEISKDKDPELFFL 207 (541)
T ss_pred CCCHHHHHHHHHHcC--CEeccCCCCCCceEccccccCCcCCC-CCCCCHHHhEEEEEEEECCCCEEEECCCCCHHHHHH
Confidence 999999999999986 45554 88888999999999999985 479999999999999999999997 66678999999
Q ss_pred hhcccCCCceEEEEEEEEEEecCceEEEEEEeecchhhHHHHHHHHHHHH
Q 039163 237 IRGGGGASFGVVVAWKLRLVTVPSTVTRFTITRTLEQNATKIVHKWQYVA 286 (551)
Q Consensus 237 ~rG~g~g~fGiVt~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (551)
.|||+ |+|||||++|||++|.+.... .....+ ..++++.|.++.
T Consensus 208 argsl-G~LGVItevTLr~~Pa~~l~~-~~~~~~----~~e~l~~~~~~~ 251 (541)
T TIGR01676 208 ARCGL-GGLGVVAEVTLQCVERQELVE-HTFISN----MKDIKKNHKKFL 251 (541)
T ss_pred HhcCC-CceEeEEEEEEEEEeccceeE-EEEecC----HHHHHHHHHHHH
Confidence 99998 899999999999999987432 222222 345566666554
No 7
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=99.97 E-value=4.7e-31 Score=284.77 Aligned_cols=195 Identities=19% Similarity=0.273 Sum_probs=167.4
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEeeCCcce-EEcCCCCEEEEcCCCCH
Q 039163 84 NTPKPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKI-SVDAKQKTAWVQSGATL 162 (551)
Q Consensus 84 ~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvidl~~l~~i-~id~~~~~v~v~~G~~~ 162 (551)
....|.+|++|+|++||+++|++|+++++|+.+||+||++.|.+.... ++++|||++||+| ++|+++++|+||||+++
T Consensus 52 ~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~Gt~~~gg~~~~~-~gividl~~ln~I~~id~~~~~v~VeaGv~~ 130 (499)
T PRK11230 52 YRTRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGALPLE-KGVLLVMARFNRILDINPVGRRARVQPGVRN 130 (499)
T ss_pred cCCCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEECCCcCcCCCcccCC-CcEEEEcccCCCceEEcCCCCEEEEcCCccH
Confidence 355899999999999999999999999999999999999987665443 4899999999998 99999999999999999
Q ss_pred HHHHHHHHHhcCCcccCCCCCCcccccccccCCCCCCcccccCchhhheeeEEEEecCcceeecc-----CCCchhhhhh
Q 039163 163 GQLYYRIAEKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDAHGRLLDRK-----SMGEDLFWAI 237 (551)
Q Consensus 163 ~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G~~~D~v~~~~vV~a~G~iv~~~-----~~~~dLf~a~ 237 (551)
.+|.++|.++|+.+...++....++|||.+++++.|+.+.+||...|+|+++|||++||++++.. ..++||+|++
T Consensus 131 ~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~~d~v~~levVl~~G~i~~~~~~~~~~~g~dl~~l~ 210 (499)
T PRK11230 131 LAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHNLLKVEILTLDGEALTLGSDALDSPGFDLLALF 210 (499)
T ss_pred HHHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccceeeCChhhheeEEEEEcCCCcEEEeCCccCCCCccchHhhh
Confidence 99999999987533333455556889999999999999999999999999999999999999721 3478999999
Q ss_pred hcccCCCceEEEEEEEEEEecCceEEEEEEeecchhhHHHHHH
Q 039163 238 RGGGGASFGVVVAWKLRLVTVPSTVTRFTITRTLEQNATKIVH 280 (551)
Q Consensus 238 rG~g~g~fGiVt~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 280 (551)
+|+. |+|||||+++||++|.|+....+.+.|+..+++.+++.
T Consensus 211 ~Gs~-GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~ 252 (499)
T PRK11230 211 TGSE-GMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVG 252 (499)
T ss_pred ccCC-CccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHH
Confidence 9998 89999999999999999876666666654444444443
No 8
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.97 E-value=3.2e-30 Score=259.76 Aligned_cols=178 Identities=20% Similarity=0.337 Sum_probs=153.3
Q ss_pred cCCCCCCCceEEEecCCHHHHHHHHHHHHhc--CCcEEEEcCCCCCCCCccccCCCEEEEEee---CCcce-EEcCCCCE
Q 039163 80 FSTPNTPKPQVIITPLDVSQVQAAIKCSKKQ--GLQIRVRSGGHDFEGLSYVSHVPFVVIDLI---NLCKI-SVDAKQKT 153 (551)
Q Consensus 80 ~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~--~~~~~~~ggGh~~~g~~~~~~~~gvvidl~---~l~~i-~id~~~~~ 153 (551)
|....+..|.+|++|+|+|||++++|+|... .+|+++||+|||..|.+.... +|++|.|+ .|+++ .++.++..
T Consensus 56 Fg~~~~~~P~aVL~P~S~edVs~ilk~~~~~~s~~pVaarG~GhSl~Gqa~a~~-~GvvV~m~~~~~~~~~~~~~~~~~y 134 (505)
T KOG1231|consen 56 FGNRTQLPPLAVLFPSSVEDVSKILKHCNDYGSNFPVAARGGGHSLEGQALATR-GGVVVCMDSSLLMKDVPVLVVDDLY 134 (505)
T ss_pred ccccCCCCCeeEEcCCCHHHHHHHHHHHhccCCcceeeccCCcccccCccccCC-CCeEEEEehhhccCCCceeecccce
Confidence 4445567999999999999999999999999 899999999999999888733 48776665 35555 45666789
Q ss_pred EEEcCCCCHHHHHHHHHHhcCCcccCCCCCCcccccccccCCCCCCcccccCchhhheeeEEEEecCcceee-ccCCCch
Q 039163 154 AWVQSGATLGQLYYRIAEKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDAHGRLLD-RKSMGED 232 (551)
Q Consensus 154 v~v~~G~~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G~~~D~v~~~~vV~a~G~iv~-~~~~~~d 232 (551)
|.|.||..|-+|.+++.++|+.-.++...- ..+|||.++.+|+|.++.+||...+||++++||+++|+|++ ++..|++
T Consensus 135 vdV~~g~~Widll~~t~e~GL~p~swtDyl-~ltVGGtlsnagiggqafRyGpqi~NV~~LdVVtgkGeiv~cs~r~n~~ 213 (505)
T KOG1231|consen 135 VDVSAGTLWIDLLDYTLEYGLSPFSWTDYL-PLTVGGTLSNAGIGGQAFRYGPQISNVIELDVVTGKGEIVTCSKRANSN 213 (505)
T ss_pred EEeeCChhHHHHHHHHHHcCCCccCcCCcc-ceeecceeccCccccceeeccchhhceEEEEEEcCCCcEEecccccCce
Confidence 999999999999999999864212333222 38899999999999999999999999999999999999997 6778999
Q ss_pred hhhhhhcccCCCceEEEEEEEEEEecCc
Q 039163 233 LFWAIRGGGGASFGVVVAWKLRLVTVPS 260 (551)
Q Consensus 233 Lf~a~rG~g~g~fGiVt~~~~~~~p~~~ 260 (551)
||.++.||. |+|||||+++++++|+|+
T Consensus 214 lf~~vlGgl-GqfGIITrArI~le~aP~ 240 (505)
T KOG1231|consen 214 LFFLVLGGL-GQFGIITRARIKLEPAPK 240 (505)
T ss_pred eeeeeeccC-cceeeEEEEEEEeccCCc
Confidence 999999998 899999999999999994
No 9
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=99.97 E-value=7.7e-31 Score=283.93 Aligned_cols=179 Identities=20% Similarity=0.229 Sum_probs=158.8
Q ss_pred cCCCCCCCceEEEecCCHHHHHHHHHHHHhcCCcEEEEc-CCCCCCCCccccC-CCEEEEEeeCCcc-eEEcCCCCEEEE
Q 039163 80 FSTPNTPKPQVIITPLDVSQVQAAIKCSKKQGLQIRVRS-GGHDFEGLSYVSH-VPFVVIDLINLCK-ISVDAKQKTAWV 156 (551)
Q Consensus 80 ~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~g-gGh~~~g~~~~~~-~~gvvidl~~l~~-i~id~~~~~v~v 156 (551)
|+......|.+|++|+|++||+++|++|+++++||+++| +||++.+.+...+ +++++|||++||+ +++|.++++|+|
T Consensus 24 Wag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~gHs~~~~a~t~~~~ggvvIdL~~Ln~il~iD~~~~tVtV 103 (557)
T TIGR01677 24 FPDRSTCRAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDGSDGALLISTKRLNHVVAVDATAMTVTV 103 (557)
T ss_pred cCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCcCcccccCCCCCEEEEEcccCCCCEEEeCCCCEEEE
Confidence 999889999999999999999999999999999999996 6999876554432 2379999999999 599999999999
Q ss_pred cCCCCHHHHHHHHHHhcCCcccCC-CCCCcccccccccCCCCCCcc-cccCchhhheeeEEEEecCc------ceee-cc
Q 039163 157 QSGATLGQLYYRIAEKSKNLGFPG-GVCPTVGVGGHFSGGGYGIML-RKFGLAADNIVDAHLIDAHG------RLLD-RK 227 (551)
Q Consensus 157 ~~G~~~~~l~~~l~~~g~~l~~~~-g~~~~vgvgG~~~gGg~g~~~-~~~G~~~D~v~~~~vV~a~G------~iv~-~~ 227 (551)
|||+++.+|.+.|.++| ++++. +.+..++|||.+++|++|... +++|..+|+|++++||++|| ++++ +.
T Consensus 104 ~AG~~l~~L~~~L~~~G--lal~~~~~~~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G~~~v~~~s~ 181 (557)
T TIGR01677 104 ESGMSLRELIVEAEKAG--LALPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVRILSE 181 (557)
T ss_pred CCCCcHHHHHHHHHHcC--CEeccCCCCCCeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcccCcceEEEeCC
Confidence 99999999999999986 55555 455678999999999999866 68999999999999999998 7776 66
Q ss_pred CCCchhhhhhhcccCCCceEEEEEEEEEEecCce
Q 039163 228 SMGEDLFWAIRGGGGASFGVVVAWKLRLVTVPST 261 (551)
Q Consensus 228 ~~~~dLf~a~rG~g~g~fGiVt~~~~~~~p~~~~ 261 (551)
.+|+|||||+|||+ |+|||||++|||++|.+..
T Consensus 182 ~~~~dLf~a~rgsl-G~lGVVtevTL~~~P~~~~ 214 (557)
T TIGR01677 182 GDTPNEFNAAKVSL-GVLGVISQVTLALQPMFKR 214 (557)
T ss_pred CCCHHHHHhhccCC-CccEeeeEEEEEEEccccc
Confidence 67899999999998 8999999999999998763
No 10
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=99.97 E-value=2.4e-29 Score=267.07 Aligned_cols=189 Identities=21% Similarity=0.257 Sum_probs=161.6
Q ss_pred EEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEeeCCcce-EEcCCCCEEEEcCCCCHHHHHHHH
Q 039163 91 IITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKI-SVDAKQKTAWVQSGATLGQLYYRI 169 (551)
Q Consensus 91 vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvidl~~l~~i-~id~~~~~v~v~~G~~~~~l~~~l 169 (551)
||+|+|++||+++|++|+++++|+.+||+|||+.|.+...+ ++++|||++||+| ++|+++++++||||+++.+|.++|
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~Gt~~~g~~~~~~-~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~~l 79 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPEE-GGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQAV 79 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCccCCC-CeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHHHH
Confidence 57899999999999999999999999999999987666543 5899999999998 999999999999999999999999
Q ss_pred HHhcCCcccCCCCCCcccccccccCCCCCCcccccCchhhheeeEEEEecCcceeec------cCCCchhhhhhhcccCC
Q 039163 170 AEKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDAHGRLLDR------KSMGEDLFWAIRGGGGA 243 (551)
Q Consensus 170 ~~~g~~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G~~~D~v~~~~vV~a~G~iv~~------~~~~~dLf~a~rG~g~g 243 (551)
.++|+.+.+.+++....+|||.+.+++.|..+.+||...|+|++++||++||++++. ...++||+|.+.|+. |
T Consensus 80 ~~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~Gs~-G 158 (413)
T TIGR00387 80 EEHNLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVGSE-G 158 (413)
T ss_pred HHcCCeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhcccCC-c
Confidence 998753333345555678999999999999999999999999999999999999962 234679999999998 8
Q ss_pred CceEEEEEEEEEEecCceEEEEEEeecchhhHHHHHHH
Q 039163 244 SFGVVVAWKLRLVTVPSTVTRFTITRTLEQNATKIVHK 281 (551)
Q Consensus 244 ~fGiVt~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 281 (551)
+|||||+++||++|.|+....+.+.|...+++.+++..
T Consensus 159 tlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~ 196 (413)
T TIGR00387 159 TLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYD 196 (413)
T ss_pred cceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHH
Confidence 99999999999999998766666666654444444433
No 11
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.96 E-value=3.7e-29 Score=256.83 Aligned_cols=169 Identities=22% Similarity=0.291 Sum_probs=146.2
Q ss_pred CHHHHHHHHHHHHhcCCcEEEEcCCC-CCCCCccccCCCEEEEEeeCCcce-EEcCCCCEEEEcCCCCHHHHHHHHHHhc
Q 039163 96 DVSQVQAAIKCSKKQGLQIRVRSGGH-DFEGLSYVSHVPFVVIDLINLCKI-SVDAKQKTAWVQSGATLGQLYYRIAEKS 173 (551)
Q Consensus 96 s~~dv~~~v~~a~~~~~~~~~~ggGh-~~~g~~~~~~~~gvvidl~~l~~i-~id~~~~~v~v~~G~~~~~l~~~l~~~g 173 (551)
.++||+++|++|+++++|+.++|||| ++.+.. .+ +++|||++||+| ++|+++.+|+|++|+++.+|.++|.++|
T Consensus 3 ~~~ev~~~v~~A~~~~~~v~~~GgGt~~~~g~~--~~--~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~~G 78 (352)
T PRK11282 3 ISAALLERVRQAAADGTPLRIRGGGSKDFYGRA--LA--GEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAEAG 78 (352)
T ss_pred hHHHHHHHHHHHHHCCCeEEEECCCCCCCCCCC--CC--CeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHHcC
Confidence 47999999999999999999999997 455653 23 579999999998 9999999999999999999999999987
Q ss_pred CCcccCC-CCCCcccccccccCCCCCCcccccCchhhheeeEEEEecCcceeec------cCCCchhhhhhhcccCCCce
Q 039163 174 KNLGFPG-GVCPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDAHGRLLDR------KSMGEDLFWAIRGGGGASFG 246 (551)
Q Consensus 174 ~~l~~~~-g~~~~vgvgG~~~gGg~g~~~~~~G~~~D~v~~~~vV~a~G~iv~~------~~~~~dLf~a~rG~g~g~fG 246 (551)
..+.+.+ ..+...+|||++++|++|+.+.+||..+|+|+++++|++||++++. +..++||||+++|+. |+||
T Consensus 79 ~~lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs~-GtLG 157 (352)
T PRK11282 79 QMLPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGSL-GTLG 157 (352)
T ss_pred CeeCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhCC-chhh
Confidence 6555534 3455689999999999999999999999999999999999999962 235689999999998 8999
Q ss_pred EEEEEEEEEEecCceEEEEEEee
Q 039163 247 VVVAWKLRLVTVPSTVTRFTITR 269 (551)
Q Consensus 247 iVt~~~~~~~p~~~~~~~~~~~~ 269 (551)
|||+++||++|.|+....+.+.+
T Consensus 158 Vitevtlkl~P~p~~~~t~~~~~ 180 (352)
T PRK11282 158 VLLEVSLKVLPRPRAELTLRLEM 180 (352)
T ss_pred hheEEEEEEEecCceEEEEEEec
Confidence 99999999999998654444443
No 12
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=99.96 E-value=8e-28 Score=258.97 Aligned_cols=176 Identities=20% Similarity=0.290 Sum_probs=158.5
Q ss_pred CcCCCCCCCceEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEeeCCcce-EEcCCCCEEEEc
Q 039163 79 RFSTPNTPKPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKI-SVDAKQKTAWVQ 157 (551)
Q Consensus 79 r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvidl~~l~~i-~id~~~~~v~v~ 157 (551)
+|+......|.+++.|+|++||+++|+.|+++++||+++|+|||+.+....+ +.+|||++|++| ++|+++++|+|+
T Consensus 88 NWsg~~~~~p~~vv~P~S~eEV~~iV~~A~~~g~~VrvvGsGhS~~~l~~td---~glIdL~~l~~Il~vD~e~~~VtV~ 164 (573)
T PLN02465 88 NWSGTHEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPVGSGLSPNGLAFSR---EGMVNLALMDKVLEVDKEKKRVTVQ 164 (573)
T ss_pred ccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCeeeCC---CEEEECcCCCCcEEEeCCCCEEEEc
Confidence 4999889999999999999999999999999999999999999998877654 346899999997 999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCcccCC-CCCCcccccccccCCCCCCcccccCchhhheeeEEEEecCcceee-ccCCCchhhh
Q 039163 158 SGATLGQLYYRIAEKSKNLGFPG-GVCPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDAHGRLLD-RKSMGEDLFW 235 (551)
Q Consensus 158 ~G~~~~~l~~~l~~~g~~l~~~~-g~~~~vgvgG~~~gGg~g~~~~~~G~~~D~v~~~~vV~a~G~iv~-~~~~~~dLf~ 235 (551)
||+++.+|.+.|.++|+ +++. |.....+|||.+.+|++|... .+|..+|+|++++||+++|++++ +..+++||||
T Consensus 165 AG~~l~~L~~~L~~~GL--al~n~g~I~~~TIGGaIstGtHGtG~-~~g~i~d~V~~l~lVta~G~vv~~s~~~~pdLF~ 241 (573)
T PLN02465 165 AGARVQQVVEALRPHGL--TLQNYASIREQQIGGFIQVGAHGTGA-RIPPIDEQVVSMKLVTPAKGTIELSKEDDPELFR 241 (573)
T ss_pred cCCCHHHHHHHHHHcCC--EeccCCCCCCeeecchhhCCCCCcCC-CcCcHhheEEEEEEEECCCCEEEECCCCCHHHHh
Confidence 99999999999999874 4554 566678999999999999864 68999999999999999999987 6667899999
Q ss_pred hhhcccCCCceEEEEEEEEEEecCce
Q 039163 236 AIRGGGGASFGVVVAWKLRLVTVPST 261 (551)
Q Consensus 236 a~rG~g~g~fGiVt~~~~~~~p~~~~ 261 (551)
+.|+|. |.|||||++|||++|.++.
T Consensus 242 aar~gl-G~lGVIteVTLql~P~~~L 266 (573)
T PLN02465 242 LARCGL-GGLGVVAEVTLQCVPAHRL 266 (573)
T ss_pred HhhccC-CCCcEEEEEEEEEEecCce
Confidence 999998 8999999999999999863
No 13
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.94 E-value=9.2e-27 Score=210.39 Aligned_cols=136 Identities=35% Similarity=0.558 Sum_probs=124.6
Q ss_pred ceEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEeeCCcc-eEEcCCCCEEEEcCCCCHHHHH
Q 039163 88 PQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCK-ISVDAKQKTAWVQSGATLGQLY 166 (551)
Q Consensus 88 p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvidl~~l~~-i~id~~~~~v~v~~G~~~~~l~ 166 (551)
|.+|++|+|++||+++|++|+++++|+.++|+||++.+.+... ++++|||++|++ +++|+++++++|++|++|.||+
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~~~--~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~ 78 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTGQSSDE--GGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLY 78 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSSTTSST--TEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcccccccC--CcEEEeeccccccccccccceeEEEeccccchhcc
Confidence 7899999999999999999999999999999999998776633 499999999999 5999999999999999999999
Q ss_pred HHHHHhcCCcccCCCCCCcccccccccCCCCCCcccccCchhhheeeEEEEecCcceee
Q 039163 167 YRIAEKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDAHGRLLD 225 (551)
Q Consensus 167 ~~l~~~g~~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G~~~D~v~~~~vV~a~G~iv~ 225 (551)
++|.++++.+.+.++.+..+++||++.+|++|..++.||..+|+|+++|+|++||++++
T Consensus 79 ~~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~ 137 (139)
T PF01565_consen 79 EALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVR 137 (139)
T ss_dssp HHHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEE
T ss_pred cccccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEE
Confidence 99999875444447888889999999999999999999999999999999999999986
No 14
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.91 E-value=4.1e-24 Score=216.89 Aligned_cols=162 Identities=22% Similarity=0.246 Sum_probs=135.6
Q ss_pred CCCceEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEeeC-CcceEEcCCCCEEEEcCCCCHH
Q 039163 85 TPKPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLIN-LCKISVDAKQKTAWVQSGATLG 163 (551)
Q Consensus 85 ~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvidl~~-l~~i~id~~~~~v~v~~G~~~~ 163 (551)
...|.+++.|+|++||+++|++|+++++|+.++|+|||....+.+.+ +++|||++ |+.+++ ++.+++||||+.|.
T Consensus 28 gg~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~GgGsnll~~d~g~~--gvvI~l~~~l~~i~~--~~~~v~v~aG~~~~ 103 (298)
T PRK13905 28 GGPADYLVEPADIEDLQEFLKLLKENNIPVTVLGNGSNLLVRDGGIR--GVVIRLGKGLNEIEV--EGNRITAGAGAPLI 103 (298)
T ss_pred CceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCceEEecCCCcc--eEEEEecCCcceEEe--cCCEEEEECCCcHH
Confidence 34799999999999999999999999999999999999765443333 89999998 998865 45689999999999
Q ss_pred HHHHHHHHhcC-CcccCCCCCCcccccccccCCCCCCcccccC-chhhheeeEEEEecCcceeeccCCCchhhhhhhccc
Q 039163 164 QLYYRIAEKSK-NLGFPGGVCPTVGVGGHFSGGGYGIMLRKFG-LAADNIVDAHLIDAHGRLLDRKSMGEDLFWAIRGGG 241 (551)
Q Consensus 164 ~l~~~l~~~g~-~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G-~~~D~v~~~~vV~a~G~iv~~~~~~~dLf~a~rG~g 241 (551)
+|.+++.++|+ +++++.|. .| +.||+++++++.|| ..+|+|+++++|++||++++.. +.|++|++|++.
T Consensus 104 ~L~~~l~~~Gl~gle~~~gi------pG-TVGGai~~NaG~~G~~~~d~v~~v~vv~~~G~~~~~~--~~e~~~~yR~s~ 174 (298)
T PRK13905 104 KLARFAAEAGLSGLEFAAGI------PG-TVGGAVFMNAGAYGGETADVLESVEVLDRDGEIKTLS--NEELGFGYRHSA 174 (298)
T ss_pred HHHHHHHHcCCCcchhccCC------Cc-chhHHHHHcCCcCceEhheeEEEEEEEeCCCCEEEEE--HHHcCCcCcccc
Confidence 99999999986 44444444 44 34577888888888 7899999999999999999743 369999999987
Q ss_pred CC-CceEEEEEEEEEEecC
Q 039163 242 GA-SFGVVVAWKLRLVTVP 259 (551)
Q Consensus 242 ~g-~fGiVt~~~~~~~p~~ 259 (551)
.+ .+||||+++||++|..
T Consensus 175 ~~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 175 LQEEGLIVLSATFQLEPGD 193 (298)
T ss_pred CCCCCEEEEEEEEEEcCCC
Confidence 44 3899999999999863
No 15
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=99.89 E-value=2.3e-22 Score=211.89 Aligned_cols=192 Identities=18% Similarity=0.178 Sum_probs=158.2
Q ss_pred CCCceEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCC----CEEEEEeeCCcce-EEcCCCCEEEEcCC
Q 039163 85 TPKPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHV----PFVVIDLINLCKI-SVDAKQKTAWVQSG 159 (551)
Q Consensus 85 ~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~----~gvvidl~~l~~i-~id~~~~~v~v~~G 159 (551)
...|.+||+|.|++||+++|++|+++++||.+||||+++.|.+.+..+ ++|||||++||+| +|| ++..++|+||
T Consensus 36 ~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAvP~~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePG 114 (564)
T PRK11183 36 QGDALAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPG 114 (564)
T ss_pred CCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcccCCCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCC
Confidence 447999999999999999999999999999999999999988876532 3899999999998 788 5678999999
Q ss_pred CCHHHHHHHHHHhcCCcccCC--CC-CCcccccccccCCCCCCcccccCchhhheeeEEEEecCcce-------ee--c-
Q 039163 160 ATLGQLYYRIAEKSKNLGFPG--GV-CPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDAHGRL-------LD--R- 226 (551)
Q Consensus 160 ~~~~~l~~~l~~~g~~l~~~~--g~-~~~vgvgG~~~gGg~g~~~~~~G~~~D~v~~~~vV~a~G~i-------v~--~- 226 (551)
+++.+|.++|.++|+ .++. |+ |-.++|||.+..++-|....+||...++++. ++|+++|++ ++ .
T Consensus 115 Vtl~~LeeaLk~~Gl--~p~sd~GSS~IGasIGGnIAtNAGG~~vlRgga~te~vL~-~~V~~dGel~lVn~lgi~lG~~ 191 (564)
T PRK11183 115 TTLYQLEKALKPLGR--EPHSVIGSSCIGASVIGGICNNSGGALVQRGPAYTEMALY-AQIDEDGKLELVNHLGIDLGET 191 (564)
T ss_pred CcHHHHHHHHHHhCC--CCCCcccccccCCCCccceEECCcchhheEcchhhhhhhh-hEECCCCcEEEeeccCcccCCC
Confidence 999999999999875 3333 33 2345688999999999999999999999999 999999999 32 1
Q ss_pred --------cCCCc----------------------------------hhhhhh--hcccCCCceEEEEEEEEEEecCceE
Q 039163 227 --------KSMGE----------------------------------DLFWAI--RGGGGASFGVVVAWKLRLVTVPSTV 262 (551)
Q Consensus 227 --------~~~~~----------------------------------dLf~a~--rG~g~g~fGiVt~~~~~~~p~~~~~ 262 (551)
+..+. |+...+ -|+. |.+||| +++++++|.|+..
T Consensus 192 ~e~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfnaDl~~LfeasGse-GkLgV~-avrLdtfp~p~~~ 269 (564)
T PRK11183 192 PEEILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFNADPRRLFEASGCA-GKLAVF-AVRLDTFPAEKNT 269 (564)
T ss_pred HHHHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCcccccCCHHHHhhccCCC-ceEEEE-EEEeccccCCCcc
Confidence 11223 777766 7776 899999 9999999999988
Q ss_pred EEEEEeecchhhHHHHHHHH
Q 039163 263 TRFTITRTLEQNATKIVHKW 282 (551)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~ 282 (551)
..|.+.++..+.+.++....
T Consensus 270 ~vf~ig~n~~~~~~~~rr~i 289 (564)
T PRK11183 270 QVFYIGTNDPAVLTEIRRHI 289 (564)
T ss_pred eEEEEeCCCHHHHHHHHHHH
Confidence 88888887655555544433
No 16
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.86 E-value=2.2e-21 Score=196.65 Aligned_cols=162 Identities=18% Similarity=0.224 Sum_probs=135.6
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEeeCCcceEEcCCCCEEEEcCCCCHH
Q 039163 84 NTPKPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKISVDAKQKTAWVQSGATLG 163 (551)
Q Consensus 84 ~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvidl~~l~~i~id~~~~~v~v~~G~~~~ 163 (551)
....|.++++|+|++||++++++|+++++|+.++|||||+...+.+.+ |++|+|++|++++++ +.+++||+|+.|.
T Consensus 33 igg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~GgGSNll~~d~g~~--GvvI~l~~l~~i~~~--~~~v~v~aG~~~~ 108 (305)
T PRK12436 33 VGGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNVIIKDGGIR--GITVSLIHITGVTVT--GTTIVAQCGAAII 108 (305)
T ss_pred cCceEEEEEecCCHHHHHHHHHHHHHcCCCEEEEcCCeEEEEeCCCee--EEEEEeCCcCcEEEe--CCEEEEEeCCcHH
Confidence 344799999999999999999999999999999999999874433333 899999889999876 4589999999999
Q ss_pred HHHHHHHHhcC-CcccCCCCCCcccccccccCCCCCCcccccC-chhhheeeEEEEecCcceeeccCCCchhhhhhhccc
Q 039163 164 QLYYRIAEKSK-NLGFPGGVCPTVGVGGHFSGGGYGIMLRKFG-LAADNIVDAHLIDAHGRLLDRKSMGEDLFWAIRGGG 241 (551)
Q Consensus 164 ~l~~~l~~~g~-~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G-~~~D~v~~~~vV~a~G~iv~~~~~~~dLf~a~rG~g 241 (551)
+|.+++.++|+ |+.++.|.+++|| |+.+++++.|| ...|.+.+++|+++||++++.. +.|+.|+||.+.
T Consensus 109 ~L~~~~~~~gl~Gle~~~giPGtVG-------Gav~~NAGayG~~~~dvl~~v~vv~~~G~v~~~~--~~e~~f~YR~s~ 179 (305)
T PRK12436 109 DVSRIALDHNLTGLEFACGIPGSVG-------GALYMNAGAYGGEISFVLTEAVVMTGDGELRTLT--KEAFEFGYRKSV 179 (305)
T ss_pred HHHHHHHHcCCccchhhcCCccchh-------HHHHhcCccchhehheeeeEEEEEeCCCCEEEEE--HHHhcCcCCCCc
Confidence 99999999987 6677777777665 67777777788 5678888999999999999843 369999999874
Q ss_pred CC-CceEEEEEEEEEEec
Q 039163 242 GA-SFGVVVAWKLRLVTV 258 (551)
Q Consensus 242 ~g-~fGiVt~~~~~~~p~ 258 (551)
-. +..||++++||+.+.
T Consensus 180 ~~~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 180 FANNHYIILEARFELEEG 197 (305)
T ss_pred CCCCCEEEEEEEEEEcCC
Confidence 22 357999999999764
No 17
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.86 E-value=6.6e-21 Score=192.75 Aligned_cols=182 Identities=24% Similarity=0.300 Sum_probs=159.1
Q ss_pred cCCCCCCCceEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEeeCCcce-EEcCCCCEEEEcC
Q 039163 80 FSTPNTPKPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKI-SVDAKQKTAWVQS 158 (551)
Q Consensus 80 ~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvidl~~l~~i-~id~~~~~v~v~~ 158 (551)
|..+..++.+-|-+|+|++|+.++|+.|.+++.++++.|.|||..+..+.+ |.+|+|+.||++ ++|++..++||++
T Consensus 42 fPdr~~c~aanv~yP~teaeL~~lVa~A~~a~~kirvVg~gHSp~~l~ctd---g~lisl~~lnkVv~~dpe~~tvTV~a 118 (518)
T KOG4730|consen 42 FPDRSTCKAANVNYPKTEAELVELVAAATEAGKKIRVVGSGHSPSKLVCTD---GLLISLDKLNKVVEFDPELKTVTVQA 118 (518)
T ss_pred cCchhhhhhcccCCCCCHHHHHHHHHHHHHcCceEEEecccCCCCcceecc---ccEEEhhhhccceeeCchhceEEecc
Confidence 444444567778899999999999999999999999999999998887765 689999999997 8999999999999
Q ss_pred CCCHHHHHHHHHHhcCCcccCC-CCCCcccccccccCCCCCCcccccCchhhheeeEEEEecCcceee-ccCCCchhhhh
Q 039163 159 GATLGQLYYRIAEKSKNLGFPG-GVCPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDAHGRLLD-RKSMGEDLFWA 236 (551)
Q Consensus 159 G~~~~~l~~~l~~~g~~l~~~~-g~~~~vgvgG~~~gGg~g~~~~~~G~~~D~v~~~~vV~a~G~iv~-~~~~~~dLf~a 236 (551)
|+++.+|.+++++.| ++++. +....+.|||++..|.||....-|+.....++-..++.++|.++. +++..+|+|.|
T Consensus 119 GirlrQLie~~~~~G--lsL~~~~si~e~sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e~dpe~F~A 196 (518)
T KOG4730|consen 119 GIRLRQLIEELAKLG--LSLPNAPSISEQSVGGIISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEEKDPELFNA 196 (518)
T ss_pred CcCHHHHHHHHHhcC--ccccCCCceecceeeeEEecccCCCccccCcccceeEEEeeeccCCceEEEecccCCHHHHhh
Confidence 999999999999875 56665 777889999999999999988878887777788888889998776 77778999999
Q ss_pred hhcccCCCceEEEEEEEEEEecCceEEEEEE
Q 039163 237 IRGGGGASFGVVVAWKLRLVTVPSTVTRFTI 267 (551)
Q Consensus 237 ~rG~g~g~fGiVt~~~~~~~p~~~~~~~~~~ 267 (551)
.+-+. |-+|||.++||++.|+-+.+..+.+
T Consensus 197 AkvSL-G~LGVIs~VTl~~vp~Fk~s~t~~v 226 (518)
T KOG4730|consen 197 AKVSL-GVLGVISQVTLSVVPAFKRSLTYVV 226 (518)
T ss_pred hhhcc-cceeEEEEEEEEEEecceeeeEEEE
Confidence 99998 8999999999999999876655444
No 18
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.85 E-value=4.2e-21 Score=193.05 Aligned_cols=162 Identities=19% Similarity=0.200 Sum_probs=137.9
Q ss_pred CCCceEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEeeCCcceEEcCCCCEEEEcCCCCHHH
Q 039163 85 TPKPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKISVDAKQKTAWVQSGATLGQ 164 (551)
Q Consensus 85 ~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvidl~~l~~i~id~~~~~v~v~~G~~~~~ 164 (551)
.-.|.++++|+|++||++++++|+++++|+.++|||||+...+...+ +++|++++|+.+.+++ +.+++||||+.|.+
T Consensus 10 gg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGSNll~~d~~~~--gvvi~l~~~~~~~~~~-~~~v~v~aG~~~~~ 86 (284)
T TIGR00179 10 GGNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLLILDDGRG--GVIINLGKGIDIEDDE-GEYVHVGGGENWHK 86 (284)
T ss_pred CceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecceEEEEccCCcC--eEEEECCCCceEEEec-CCEEEEEcCCcHHH
Confidence 44789999999999999999999999999999999999887665444 8999999998887766 57999999999999
Q ss_pred HHHHHHHhcCCcccCCCCCCcccccccccCCCCCCcccccCchhh-heeeEEEEecCcceeeccCCCchhhhhhhcccCC
Q 039163 165 LYYRIAEKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGLAAD-NIVDAHLIDAHGRLLDRKSMGEDLFWAIRGGGGA 243 (551)
Q Consensus 165 l~~~l~~~g~~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G~~~D-~v~~~~vV~a~G~iv~~~~~~~dLf~a~rG~g~g 243 (551)
|.+++.++|+ .|.+..+|+.| +.||+++++++.||..++ .|++++||++||++++.. +.|+.|+||-+.-.
T Consensus 87 l~~~~~~~Gl-----~GlE~l~giPG-tvGGai~mNAGayG~~i~d~l~~v~vv~~~G~~~~~~--~~~~~f~YR~S~f~ 158 (284)
T TIGR00179 87 LVKYALKNGL-----SGLEFLAGIPG-TVGGAVIMNAGAYGVEISEVLVYATILLATGKTEWLT--NEQLGFGYRTSIFQ 158 (284)
T ss_pred HHHHHHHCCC-----cccccCCCCCc-hHHHHHHHhcccchhehhheEEEEEEEeCCCCEEEEE--HHHccccCCccccC
Confidence 9999999875 36777777777 578999999999999875 679999999999999743 26999999965421
Q ss_pred C-c-eEEEEEEEEEEe
Q 039163 244 S-F-GVVVAWKLRLVT 257 (551)
Q Consensus 244 ~-f-GiVt~~~~~~~p 257 (551)
. . .||++++|++.+
T Consensus 159 ~~~~~iil~a~~~l~~ 174 (284)
T TIGR00179 159 HKYVGLVLKAEFQLTL 174 (284)
T ss_pred CCCcEEEEEEEEEecc
Confidence 1 1 599999999843
No 19
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.85 E-value=1.1e-20 Score=194.47 Aligned_cols=163 Identities=18% Similarity=0.178 Sum_probs=136.0
Q ss_pred CCCceEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEeeCCcceEEcCCCCEEEEcCCCCHHH
Q 039163 85 TPKPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKISVDAKQKTAWVQSGATLGQ 164 (551)
Q Consensus 85 ~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvidl~~l~~i~id~~~~~v~v~~G~~~~~ 164 (551)
...+.+++.|+|++||++++++|+++++|+.++|+|||....+.+.+ |+||+++ +++++++.++.+|+|++|+.|.+
T Consensus 30 Gg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSNlLv~D~g~~--GvVI~l~-~~~i~i~~~~~~v~vgAG~~~~~ 106 (363)
T PRK13903 30 GGPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNLVIADDGFD--GTVVRVA-TRGVTVDCGGGLVRAEAGAVWDD 106 (363)
T ss_pred CccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCeeEeECCCCcc--EEEEEeC-CCcEEEeCCCCEEEEEcCCCHHH
Confidence 34789999999999999999999999999999999999875443333 8999997 58888876667999999999999
Q ss_pred HHHHHHHhcC-CcccCCCCCCcccccccccCCCCCCcccccCc-hhhheeeEEEEecC-cceeeccCCCchhhhhhhccc
Q 039163 165 LYYRIAEKSK-NLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGL-AADNIVDAHLIDAH-GRLLDRKSMGEDLFWAIRGGG 241 (551)
Q Consensus 165 l~~~l~~~g~-~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G~-~~D~v~~~~vV~a~-G~iv~~~~~~~dLf~a~rG~g 241 (551)
|.+++.++|+ |+++..|.+++||. +.-++.+.||. ..|.|.++++++.+ |++++.. +.||+|+||++.
T Consensus 107 l~~~a~~~GL~GlE~laGIPGTVGG-------Av~mNaGayG~ei~D~l~sV~vvd~~~G~~~~~~--~~el~f~YR~S~ 177 (363)
T PRK13903 107 VVARTVEAGLGGLECLSGIPGSAGA-------TPVQNVGAYGQEVSDTITRVRLLDRRTGEVRWVP--AADLGFGYRTSV 177 (363)
T ss_pred HHHHHHHcCCccccccCCCCcchhh-------HhhcCCChhHHHHhhhEeEEEEEECCCCEEEEEE--HHHcceeccccc
Confidence 9999999998 68888888888874 44445555564 58999999999965 9999743 479999999862
Q ss_pred --CCCceEEEEEEEEEEecC
Q 039163 242 --GASFGVVVAWKLRLVTVP 259 (551)
Q Consensus 242 --~g~fGiVt~~~~~~~p~~ 259 (551)
+++++|||+++||++|..
T Consensus 178 f~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 178 LKHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred cCCCCCEEEEEEEEEEEcCC
Confidence 135789999999999863
No 20
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.85 E-value=7.8e-21 Score=192.22 Aligned_cols=163 Identities=20% Similarity=0.190 Sum_probs=133.0
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEeeC-CcceEEcCCCCEEEEcCCCCH
Q 039163 84 NTPKPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLIN-LCKISVDAKQKTAWVQSGATL 162 (551)
Q Consensus 84 ~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvidl~~-l~~i~id~~~~~v~v~~G~~~ 162 (551)
....|.+++.|+|++||++++++|+++++|+.++|||||....+.+.+ |++|++++ ++.++++ +.+++||||+.|
T Consensus 32 igg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGSNllv~d~g~~--gvVI~l~~~~~~i~~~--~~~v~v~AG~~~ 107 (302)
T PRK14652 32 VGGPADLLVRPADPDALSALLRAVRELGVPLSILGGGANTLVADAGVR--GVVLRLPQDFPGESTD--GGRLVLGAGAPI 107 (302)
T ss_pred cCCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCcceeecCCCEe--eEEEEecCCcceEEec--CCEEEEECCCcH
Confidence 345899999999999999999999999999999999999864333232 89999976 5556544 469999999999
Q ss_pred HHHHHHHHHhcCCcccCCCCCCcccccccccCCCCCCccc-ccCchhhheeeEEEEecCcceeeccCCCchhhhhhhccc
Q 039163 163 GQLYYRIAEKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLR-KFGLAADNIVDAHLIDAHGRLLDRKSMGEDLFWAIRGGG 241 (551)
Q Consensus 163 ~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~gGg~g~~~~-~~G~~~D~v~~~~vV~a~G~iv~~~~~~~dLf~a~rG~g 241 (551)
.+|.+++.++|+ .|.+..+|+.| +.||++.++++ ++|.+.|+|+++++|+++| +++.. ..|+.|+||++.
T Consensus 108 ~~L~~~~~~~GL-----~GlE~l~gIPG-TvGGav~mNaGa~ggei~d~v~~v~vv~~~G-~~~~~--~~e~~f~YR~s~ 178 (302)
T PRK14652 108 SRLPARAHAHGL-----VGMEFLAGIPG-TLGGAVAMNAGTKLGEMKDVVTAVELATADG-AGFVP--AAALGYAYRTCR 178 (302)
T ss_pred HHHHHHHHHcCC-----cccccccCCCc-chhHHHHHcCCCCceEhhheEEEEEEECCCC-cEEee--hhhcCcccceec
Confidence 999999999874 26777777777 66788888876 6668999999999999999 44422 369999999864
Q ss_pred CCCceEEEEEEEEEEecC
Q 039163 242 GASFGVVVAWKLRLVTVP 259 (551)
Q Consensus 242 ~g~fGiVt~~~~~~~p~~ 259 (551)
-+..||||+++||++|..
T Consensus 179 ~~~~~II~~a~~~L~~~~ 196 (302)
T PRK14652 179 LPPGAVITRVEVRLRPGD 196 (302)
T ss_pred cCCCeEEEEEEEEEecCC
Confidence 223489999999999853
No 21
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.84 E-value=3.9e-20 Score=182.70 Aligned_cols=187 Identities=21% Similarity=0.286 Sum_probs=165.0
Q ss_pred cccCcCCCCCCCceEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEeeCCcce-EEcCCCCEE
Q 039163 76 QNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKI-SVDAKQKTA 154 (551)
Q Consensus 76 ~n~r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvidl~~l~~i-~id~~~~~v 154 (551)
+|.-|-....-.-..|+.|+|+++|++++++|+++++.+.++||-++..|.|.+.- +-||++|.+||+| ++|+-.+++
T Consensus 78 ~n~dwm~kyrG~sklvL~Pkst~eVS~ILkYCn~~kLAVVPQGGNTgLVGgSVPvf-DEiVlsl~~mNKi~sfDevsGil 156 (511)
T KOG1232|consen 78 FNTDWMKKYRGQSKLVLKPKSTEEVSAILKYCNDRKLAVVPQGGNTGLVGGSVPVF-DEIVLSLGLMNKILSFDEVSGIL 156 (511)
T ss_pred hhhHHHHhccCCceEEecCCCHHHHHHHHHhhccccEEEecCCCCcccccCcccch-HHHhhhhhhhccccccccccceE
Confidence 35568776677889999999999999999999999999999999999887776653 3799999999998 899999999
Q ss_pred EEcCCCCHHHHHHHHHHhcCCcccCCCCCCcccccccccCCCCCCcccccCchhhheeeEEEEecCcceee------ccC
Q 039163 155 WVQSGATLGQLYYRIAEKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDAHGRLLD------RKS 228 (551)
Q Consensus 155 ~v~~G~~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G~~~D~v~~~~vV~a~G~iv~------~~~ 228 (551)
++.+|+.+.++..+|+++|+-+.+.-|.-+++-|||.++..+-|..--+||...-+|+++|+|+++|+|++ .+.
T Consensus 157 ~cdaG~ILen~d~~l~e~g~m~PlDLgAKgsCqiGG~vsTnAGGlrllRYGsLHgsvLGle~Vlp~G~vl~~~~slRKDN 236 (511)
T KOG1232|consen 157 KCDAGVILENADNFLAEKGYMFPLDLGAKGSCQIGGNVSTNAGGLRLLRYGSLHGSVLGLEVVLPNGTVLDLLSSLRKDN 236 (511)
T ss_pred EeccceEehhhHHHHHhcCceeeecCCCcccceecceeeccCCceEEEEecccccceeeeEEEcCCCchhhhhhhhcccC
Confidence 99999999999999999976544555777788899999999999999999999999999999999999984 345
Q ss_pred CCchhhhhhhcccCCCceEEEEEEEEEEecCceEEE
Q 039163 229 MGEDLFWAIRGGGGASFGVVVAWKLRLVTVPSTVTR 264 (551)
Q Consensus 229 ~~~dLf~a~rG~g~g~fGiVt~~~~~~~p~~~~~~~ 264 (551)
++.|+-...-|+. |++||||.+.+-+.|.|+.+..
T Consensus 237 TgydlkhLFIGSE-GtlGVvT~vSil~~~kpksvn~ 271 (511)
T KOG1232|consen 237 TGYDLKHLFIGSE-GTLGVVTKVSILAPPKPKSVNV 271 (511)
T ss_pred ccccchhheecCC-ceeeEEeeEEEeecCCCcceeE
Confidence 6789999999997 8999999999999999986543
No 22
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.83 E-value=2.2e-20 Score=189.38 Aligned_cols=160 Identities=21% Similarity=0.208 Sum_probs=134.3
Q ss_pred CCceEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEeeCCcceEEcCCCCEEEEcCCCCHHHH
Q 039163 86 PKPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKISVDAKQKTAWVQSGATLGQL 165 (551)
Q Consensus 86 ~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvidl~~l~~i~id~~~~~v~v~~G~~~~~l 165 (551)
-.+.+++.|+|++||++++++|+++++|+.++|+|||....+.+.+ |++|++++|++++++. .+++||||+.|.+|
T Consensus 35 G~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgGSNll~~d~g~~--GvvI~l~~l~~i~~~~--~~v~v~aG~~~~~l 110 (307)
T PRK13906 35 GNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIREGGIR--GIVISLLSLDHIEVSD--DAIIAGSGAAIIDV 110 (307)
T ss_pred ceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCceeEeecCCCcc--eEEEEecCccceEEeC--CEEEEECCCcHHHH
Confidence 4688999999999999999999999999999999999875443333 8999998999998763 58999999999999
Q ss_pred HHHHHHhcCCcccCCCCCCcccccccccCCCCCCcccccC-chhhheeeEEEEecCcceeeccCCCchhhhhhhcccCCC
Q 039163 166 YYRIAEKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLRKFG-LAADNIVDAHLIDAHGRLLDRKSMGEDLFWAIRGGGGAS 244 (551)
Q Consensus 166 ~~~l~~~g~~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G-~~~D~v~~~~vV~a~G~iv~~~~~~~dLf~a~rG~g~g~ 244 (551)
.+++.++|+ .|.+..+|+.| +.||+..++++.|| .++|+|+++++|+++|++++... .|+.|+||-+.--.
T Consensus 111 ~~~~~~~Gl-----~GlE~~~gIPG-tVGGav~mNaGayGg~i~D~l~~v~vv~~~G~~~~~~~--~e~~f~YR~S~~~~ 182 (307)
T PRK13906 111 SRVARDYAL-----TGLEFACGIPG-SIGGAVYMNAGAYGGEVKDCIDYALCVNEQGSLIKLTT--KELELDYRNSIIQK 182 (307)
T ss_pred HHHHHHcCC-----ccchhhcCCCc-cHhHHHHhhCCcchhhhhhheeEEEEEeCCCCEEEEEH--HHccCcCCcccCCC
Confidence 999999875 35555567777 56788888899996 78999999999999999997432 69999999664221
Q ss_pred -ceEEEEEEEEEEe
Q 039163 245 -FGVVVAWKLRLVT 257 (551)
Q Consensus 245 -fGiVt~~~~~~~p 257 (551)
--||++++|++.|
T Consensus 183 ~~~ii~~~~~~l~~ 196 (307)
T PRK13906 183 EHLVVLEAAFTLAP 196 (307)
T ss_pred CCEEEEEEEEEECC
Confidence 2499999999986
No 23
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=99.77 E-value=5.6e-18 Score=167.72 Aligned_cols=191 Identities=18% Similarity=0.253 Sum_probs=159.4
Q ss_pred cCCCCCCCceEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCC-CCccccCCC--EEEEEeeCCcce-EEcCCCCEEE
Q 039163 80 FSTPNTPKPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFE-GLSYVSHVP--FVVIDLINLCKI-SVDAKQKTAW 155 (551)
Q Consensus 80 ~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~-g~~~~~~~~--gvvidl~~l~~i-~id~~~~~v~ 155 (551)
|.......|..||-|+..+||.++|+.|.+|++-+.+.|||+|.. +...+.+.. -+.+|++.||+| =+|.++-+++
T Consensus 153 regkf~RiPDiVvWP~chdevVkiv~lA~khN~~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnriLWidreNLT~~ 232 (613)
T KOG1233|consen 153 REGKFPRIPDIVVWPKCHDEVVKIVELAMKHNCAIIPIGGGTSVSNALDCPETEKRAIISLDTSQMNRILWIDRENLTCR 232 (613)
T ss_pred hcCccCCCCceEecccchHHHHHHHHHHhhcCeEEEEeCCcccccccccCCcccceeEEEecHHhhhheeEeccccceEE
Confidence 344556799999999999999999999999999999999999976 444444322 345788899998 6899999999
Q ss_pred EcCCCCHHHHHHHHHHhcCCcccCCCCCCcccccccccCCCCCCcccccCchhhheeeEEEEecCcceee-----ccCCC
Q 039163 156 VQSGATLGQLYYRIAEKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDAHGRLLD-----RKSMG 230 (551)
Q Consensus 156 v~~G~~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G~~~D~v~~~~vV~a~G~iv~-----~~~~~ 230 (551)
+++|+.-.+|.+.|.+.|....--+.+..-.++||+++..+.|+--..||.+-|-|+.+++|++.|.|-. +-+.+
T Consensus 233 ~eaGIvGQ~LERqL~~~G~t~GHEPDS~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Giiek~Cq~PRmS~G 312 (613)
T KOG1233|consen 233 AEAGIVGQSLERQLNKKGFTCGHEPDSIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGIIEKQCQVPRMSSG 312 (613)
T ss_pred EecCcchHHHHHHHhhcCcccCCCCCceeeecccceeeeccccccccccCChhHheEEEEeecCcchhhhhhcCCcccCC
Confidence 9999999999999999864211122222236789999999999999999999999999999999998873 33468
Q ss_pred chhhhhhhcccCCCceEEEEEEEEEEecCceEEEEEEeecc
Q 039163 231 EDLFWAIRGGGGASFGVVVAWKLRLVTVPSTVTRFTITRTL 271 (551)
Q Consensus 231 ~dLf~a~rG~g~g~fGiVt~~~~~~~p~~~~~~~~~~~~~~ 271 (551)
||+-.-+.|+. |++||||++++|+.|.|+......+.|+.
T Consensus 313 PDihh~IlGSE-GTLGVitEvtiKirPiPe~~ryGS~aFPN 352 (613)
T KOG1233|consen 313 PDIHHIILGSE-GTLGVITEVTIKIRPIPEVKRYGSFAFPN 352 (613)
T ss_pred CCcceEEeccC-cceeEEEEEEEEEeechhhhhcCccccCc
Confidence 99999999998 89999999999999999866666677764
No 24
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.77 E-value=2.3e-18 Score=173.91 Aligned_cols=163 Identities=18% Similarity=0.174 Sum_probs=131.0
Q ss_pred CCceEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEeeCCc-ceEEcCCCCEEEEcCCCCHHH
Q 039163 86 PKPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLC-KISVDAKQKTAWVQSGATLGQ 164 (551)
Q Consensus 86 ~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvidl~~l~-~i~id~~~~~v~v~~G~~~~~ 164 (551)
-...+++.|+|++||++++++|+++++|+.++|+|||....+.+.+ |++|+++.++ ++..+.+..+++|+||+.|.+
T Consensus 19 g~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GSNlL~~d~g~~--GvVI~l~~~~~~i~~~~~~~~v~v~AG~~~~~ 96 (295)
T PRK14649 19 GPARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNLLVRDEGFD--GLVARYRGQRWELHEHGDTAEVWVEAGAPMAG 96 (295)
T ss_pred ceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecceeEEEeCCCcC--eEEEEecCCCcEEEEeCCcEEEEEEcCCcHHH
Confidence 3678899999999999999999999999999999999987776555 9999998754 666665555899999999999
Q ss_pred HHHHHHHhcCCcccCCCCCCcccccccccCC-CCCCcccccCchhhheeeEEEEecCcceeeccCCCchhhhhhhcccCC
Q 039163 165 LYYRIAEKSKNLGFPGGVCPTVGVGGHFSGG-GYGIMLRKFGLAADNIVDAHLIDAHGRLLDRKSMGEDLFWAIRGGGGA 243 (551)
Q Consensus 165 l~~~l~~~g~~l~~~~g~~~~vgvgG~~~gG-g~g~~~~~~G~~~D~v~~~~vV~a~G~iv~~~~~~~dLf~a~rG~g~g 243 (551)
|..++.++|+ .|....+||+| +.|| .++......+..+|+|+++++++.+|++++.. ..||+|+||-+.--
T Consensus 97 l~~~~~~~GL-----~GlE~l~GIPG-TvGGa~~mNaGayg~ei~d~l~~V~~~~~~g~~~~~~--~~el~f~YR~S~~~ 168 (295)
T PRK14649 97 TARRLAAQGW-----AGLEWAEGLPG-TIGGAIYGNAGCYGGDTATVLIRAWLLLNGSECVEWS--VHDFAYGYRTSVLK 168 (295)
T ss_pred HHHHHHHcCC-----ccccccCCCCc-chhHHHHhhccccceEhheeEEEEEEEeCCCCEEEEe--HHHcCcccceeecc
Confidence 9999999875 45556677777 4455 44444444457889999999999999998743 25999999976422
Q ss_pred C---------ceEEEEEEEEEEec
Q 039163 244 S---------FGVVVAWKLRLVTV 258 (551)
Q Consensus 244 ~---------fGiVt~~~~~~~p~ 258 (551)
. --||++++|++.|.
T Consensus 169 ~~~~~~~~~~~~ii~~~~~~l~~~ 192 (295)
T PRK14649 169 QLRADGITWRPPLVLAARFRLHRD 192 (295)
T ss_pred cccccccccCCeEEEEEEEEECCC
Confidence 1 12899999999764
No 25
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.71 E-value=5.3e-17 Score=163.34 Aligned_cols=158 Identities=18% Similarity=0.235 Sum_probs=132.5
Q ss_pred CceEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEeeCCcceEEcCCCCEEEEcCCCCHHHHH
Q 039163 87 KPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKISVDAKQKTAWVQSGATLGQLY 166 (551)
Q Consensus 87 ~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvidl~~l~~i~id~~~~~v~v~~G~~~~~l~ 166 (551)
...+++.|+|++|++++++++++ ++|+.++|+|+|....+.+.+ |+||.+++|+.++++ +..++|+||+.|.+|.
T Consensus 33 ~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSNlLv~d~g~~--gvVI~l~~~~~i~i~--~~~v~v~AG~~l~~L~ 107 (297)
T PRK14653 33 PVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTNVLPKDEPMD--FVVVSTERLDDIFVD--NDKIICESGLSLKKLC 107 (297)
T ss_pred EEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCeeEEEecCCcc--EEEEEeCCcCceEEe--CCEEEEeCCCcHHHHH
Confidence 66789999999999999999999 999999999999887776555 899999789999886 3589999999999999
Q ss_pred HHHHHhcC-CcccCCCCCCcccccccccCCCCCCcccccCc-hhhheeeEEEEecCcceeeccCCCchhhhhhhcccCCC
Q 039163 167 YRIAEKSK-NLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGL-AADNIVDAHLIDAHGRLLDRKSMGEDLFWAIRGGGGAS 244 (551)
Q Consensus 167 ~~l~~~g~-~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G~-~~D~v~~~~vV~a~G~iv~~~~~~~dLf~a~rG~g~g~ 244 (551)
.++.++|+ |+++..|.++||| |+.-++++.||. ..|.|+++++++ +|++++.. ..|+-|.||-+.-..
T Consensus 108 ~~~~~~GL~GlE~l~gIPGTVG-------GAv~mNAGayG~ei~d~l~~V~~~d-~g~v~~~~--~~e~~f~YR~S~~~~ 177 (297)
T PRK14653 108 LVAAKNGLSGFENAYGIPGSVG-------GAVYMNAGAYGWETAENIVEVVAYD-GKKIIRLG--KNEIKFSYRNSIFKE 177 (297)
T ss_pred HHHHHCCCcchhhhcCCchhHH-------HHHHHhCccCchhhheeEEEEEEEC-CCEEEEEc--hhhccccCccccCCC
Confidence 99999987 5666666655544 788888889998 789999999999 78888643 259999999654221
Q ss_pred --ceEEEEEEEEEEecC
Q 039163 245 --FGVVVAWKLRLVTVP 259 (551)
Q Consensus 245 --fGiVt~~~~~~~p~~ 259 (551)
--|||+++|++.|..
T Consensus 178 ~~~~iI~~a~f~L~~~~ 194 (297)
T PRK14653 178 EKDLIILRVTFKLKKGN 194 (297)
T ss_pred CCcEEEEEEEEEEecCC
Confidence 129999999998753
No 26
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.66 E-value=1.1e-15 Score=150.96 Aligned_cols=164 Identities=23% Similarity=0.263 Sum_probs=140.4
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEeeCCcceEEcCCCCEEEEcCCCCHH
Q 039163 84 NTPKPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKISVDAKQKTAWVQSGATLG 163 (551)
Q Consensus 84 ~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvidl~~l~~i~id~~~~~v~v~~G~~~~ 163 (551)
.......++.|++.+|++++++++.+.++|+.+.|+|+|..-.+...+ +++|.+.+++.++++.+...+++++|+.|.
T Consensus 17 iGg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNlLv~d~g~~--gvvi~~~~~~~~~~~~~~~~i~a~aG~~~~ 94 (291)
T COG0812 17 IGGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNLLVRDGGIG--GVVIKLGKLNFIEIEGDDGLIEAGAGAPWH 94 (291)
T ss_pred cCcceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCceEEEecCCCc--eEEEEcccccceeeeccCCeEEEccCCcHH
Confidence 445788999999999999999999999999999999999776555444 899999999988887777799999999999
Q ss_pred HHHHHHHHhcC-CcccCCCCCCcccccccccCCCCCCcccccCc-hhhheeeEEEEecCcceeeccCCCchhhhhhhccc
Q 039163 164 QLYYRIAEKSK-NLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGL-AADNIVDAHLIDAHGRLLDRKSMGEDLFWAIRGGG 241 (551)
Q Consensus 164 ~l~~~l~~~g~-~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G~-~~D~v~~~~vV~a~G~iv~~~~~~~dLf~a~rG~g 241 (551)
+|.+++.++|+ ||++..|.++||| |+.-|+.+.||. ..|.+.++++++.+|++.+.. +.||-|+||-+.
T Consensus 95 ~l~~~~~~~gl~GlE~l~gIPGsvG-------gav~mNaGAyG~Ei~d~~~~v~~ld~~G~~~~l~--~~el~f~YR~S~ 165 (291)
T COG0812 95 DLVRFALENGLSGLEFLAGIPGSVG-------GAVIMNAGAYGVEISDVLVSVEVLDRDGEVRWLS--AEELGFGYRTSP 165 (291)
T ss_pred HHHHHHHHcCCcchhhhcCCCcccc-------hhhhccCcccccchheeEEEEEEEcCCCCEEEEE--HHHhCcccccCc
Confidence 99999999987 6777777777766 788889999997 479999999999999999743 369999999654
Q ss_pred CCCc-eEEEEEEEEEEec
Q 039163 242 GASF-GVVVAWKLRLVTV 258 (551)
Q Consensus 242 ~g~f-GiVt~~~~~~~p~ 258 (551)
-..- .||++++|++.|-
T Consensus 166 f~~~~~vvl~v~f~L~~~ 183 (291)
T COG0812 166 FKKEYLVVLSVEFKLTKG 183 (291)
T ss_pred CCCCCEEEEEEEEEeCCC
Confidence 2222 7999999999875
No 27
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.64 E-value=1.6e-15 Score=152.18 Aligned_cols=161 Identities=17% Similarity=0.195 Sum_probs=134.1
Q ss_pred CCceEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccc-cCCCEEEEEeeCCcceEEcCCCCEEEEcCCCCHHH
Q 039163 86 PKPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYV-SHVPFVVIDLINLCKISVDAKQKTAWVQSGATLGQ 164 (551)
Q Consensus 86 ~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~-~~~~gvvidl~~l~~i~id~~~~~v~v~~G~~~~~ 164 (551)
-...+++.|+|++|+++++++++++++|+.+.|+|+|....+.+ .+ |++|.+.+|+.++++. ..++|+||+.|.+
T Consensus 31 G~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNlLv~D~g~~~--g~vi~~~~~~~i~~~~--~~v~a~AG~~~~~ 106 (302)
T PRK14650 31 GISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNILINDEEEID--FPIIYTGHLNKIEIHD--NQIVAECGTNFED 106 (302)
T ss_pred cEEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEECCCccc--eEEEEECCcCcEEEeC--CEEEEEeCCcHHH
Confidence 36678899999999999999999999999999999998766554 44 7889886799998763 4799999999999
Q ss_pred HHHHHHHhcC-CcccCCCCCCcccccccccCCCCCCcccccCc-hhhheeeEEEEecCcceeeccCCCchhhhhhhcccC
Q 039163 165 LYYRIAEKSK-NLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGL-AADNIVDAHLIDAHGRLLDRKSMGEDLFWAIRGGGG 242 (551)
Q Consensus 165 l~~~l~~~g~-~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G~-~~D~v~~~~vV~a~G~iv~~~~~~~dLf~a~rG~g~ 242 (551)
|..++.++|+ |+++..|.++||| |+.-++.+.||. ..|.|.++++++.+|++++.. ..|+-|+||-+.-
T Consensus 107 l~~~~~~~gl~GlE~l~gIPGTVG-------GAv~mNAGayG~ei~d~l~sV~~~d~~g~~~~~~--~~e~~f~YR~S~f 177 (302)
T PRK14650 107 LCKFALQNELSGLEFIYGLPGTLG-------GAIWMNARCFGNEISEILDKITFIDEKGKTICKK--FKKEEFKYKISPF 177 (302)
T ss_pred HHHHHHHcCCchhhhhcCCCcchh-------HHHHhhCCccccchheeEEEEEEEECCCCEEEEE--HHHcCcccccccC
Confidence 9999999987 5777777777666 788888899995 579999999999999998743 3699999996542
Q ss_pred CC-ceEEEEEEEEEEecC
Q 039163 243 AS-FGVVVAWKLRLVTVP 259 (551)
Q Consensus 243 g~-fGiVt~~~~~~~p~~ 259 (551)
.. =.||++++|++.|..
T Consensus 178 ~~~~~iIl~a~f~L~~~~ 195 (302)
T PRK14650 178 QNKNTFILKATLNLKKGN 195 (302)
T ss_pred CCCCEEEEEEEEEEcCCC
Confidence 11 149999999998754
No 28
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=99.63 E-value=1.4e-16 Score=114.95 Aligned_cols=47 Identities=47% Similarity=0.817 Sum_probs=34.7
Q ss_pred cccccCCCCcCCCCCCCCchhhhhhhhhhhhhccHHHHHHhHhhcCCCCCCCCCCCCC
Q 039163 482 AYVNYRDLDIGINNPGYTSIEQASIWGNKYFKNNFKRLVHVKTMADPHNFFRNEQSIP 539 (551)
Q Consensus 482 ~Y~Nyad~dl~~~~~~~~~~~~~~~~g~~yyg~n~~RL~~IK~kyDP~nvF~~~qsI~ 539 (551)
+|+||+|.+++ ...|.+.|||+|++||++||++|||+|+|+++|+||
T Consensus 1 aY~Ny~d~~~~-----------~~~~~~~yyg~n~~rL~~iK~~yDP~n~F~~~q~I~ 47 (47)
T PF08031_consen 1 AYVNYPDPDLP-----------GDDWQEAYYGENYDRLRAIKRKYDPDNVFRFPQSIP 47 (47)
T ss_dssp --TTS--GGGG-----------SSHHHHHHHGGGHHHHHHHHHHH-TT-TS-STTS--
T ss_pred CcccCCCCccc-----------hhHHHHHHhchhHHHHHHHHHHhCccceeCCCCCcC
Confidence 69999998865 127899999999999999999999999999999996
No 29
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.61 E-value=2.6e-15 Score=152.84 Aligned_cols=159 Identities=16% Similarity=0.093 Sum_probs=131.4
Q ss_pred CceEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEeeCCcceEEc--CCC-CEEEEcCCCCHH
Q 039163 87 KPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKISVD--AKQ-KTAWVQSGATLG 163 (551)
Q Consensus 87 ~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvidl~~l~~i~id--~~~-~~v~v~~G~~~~ 163 (551)
...+++.|+|++|+++++++|+++++|+.+.|+|+|....+ ..+ |++|.+ +|++++++ .++ ..+++++|+.|.
T Consensus 20 ~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNlLv~D-~~~--g~vI~~-~~~~~~~~~~~~~~~~v~a~AG~~~~ 95 (334)
T PRK00046 20 RARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNVLFTE-DFD--GTVLLN-RIKGIEVLSEDDDAWYLHVGAGENWH 95 (334)
T ss_pred EEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEEEECC-CCC--EEEEEe-cCCceEEEecCCCeEEEEEEcCCcHH
Confidence 66789999999999999999999999999999999987665 444 888887 48998873 222 279999999999
Q ss_pred HHHHHHHHhcC-CcccCCCCCCcccccccccCCCCCCcccccCc-hhhheeeEEEEecC-cceeeccCCCchhhhhhhcc
Q 039163 164 QLYYRIAEKSK-NLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGL-AADNIVDAHLIDAH-GRLLDRKSMGEDLFWAIRGG 240 (551)
Q Consensus 164 ~l~~~l~~~g~-~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G~-~~D~v~~~~vV~a~-G~iv~~~~~~~dLf~a~rG~ 240 (551)
+|.+++.++|+ |+++..|.++||| |+.-++.+.||. ..|.|.++++++.+ |++++.. +.|+.|+||-+
T Consensus 96 ~l~~~~~~~gl~GlE~l~gIPGTVG-------GAv~mNaGayG~ei~d~l~~V~v~d~~~g~~~~~~--~~e~~f~YR~S 166 (334)
T PRK00046 96 DLVLWTLQQGMPGLENLALIPGTVG-------AAPIQNIGAYGVELKDVCDYVEALDLATGEFVRLS--AAECRFGYRDS 166 (334)
T ss_pred HHHHHHHHcCchhhHHhcCCCcchh-------HHHHhcCCcCcccHheeEEEEEEEECCCCcEEEEE--HHHcCcccccc
Confidence 99999999987 6777767666665 778888899996 56999999999988 9998743 36999999966
Q ss_pred cCCC----ceEEEEEEEEEEec
Q 039163 241 GGAS----FGVVVAWKLRLVTV 258 (551)
Q Consensus 241 g~g~----fGiVt~~~~~~~p~ 258 (551)
.-.. --||++++|++.|-
T Consensus 167 ~f~~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 167 IFKHEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred cCCCCCcCCEEEEEEEEEecCC
Confidence 4221 13999999999874
No 30
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.58 E-value=1.5e-14 Score=147.04 Aligned_cols=162 Identities=17% Similarity=0.175 Sum_probs=131.1
Q ss_pred CCceEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEeeCCcceEE---cCCCCEEEEcCCCCH
Q 039163 86 PKPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKISV---DAKQKTAWVQSGATL 162 (551)
Q Consensus 86 ~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvidl~~l~~i~i---d~~~~~v~v~~G~~~ 162 (551)
-...+++.|+|.+|+++++++++++++|+.+.|+|+|....+.+.+ |+||.+.+|+++++ +.+...++|++|+.|
T Consensus 28 G~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSNlL~~D~g~~--G~VI~l~~~~~i~i~~~~~~~~~v~agAG~~~ 105 (354)
T PRK14648 28 GAAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNVLIADEGVP--GLMLSLRRFRSLHTQTQRDGSVLVHAGAGLPV 105 (354)
T ss_pred cEEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEeCCCcc--EEEEEeCCcCceEEeeccCCcEEEEEEeCCcH
Confidence 3667899999999999999999999999999999999877665555 89999977998875 222247999999999
Q ss_pred HHHHHHHHHhcC-CcccCCCCCCcccccccccCCCCCCcccccCc-hhhheeeEEEE--------------------ecC
Q 039163 163 GQLYYRIAEKSK-NLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGL-AADNIVDAHLI--------------------DAH 220 (551)
Q Consensus 163 ~~l~~~l~~~g~-~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G~-~~D~v~~~~vV--------------------~a~ 220 (551)
.+|..++.++|+ |+++..|.+++|| |+.-++.+.||. ..|.|.+++++ +.+
T Consensus 106 ~~Lv~~~~~~gl~GlE~laGIPGTVG-------GAv~mNAGAyG~ei~d~l~~V~v~d~~~~~~~~~~~~~~~~~~~~~~ 178 (354)
T PRK14648 106 AALLAFCAHHALRGLETFAGLPGSVG-------GAAYMNARCYGRAIADCFHSARTLVLHPVRSRAKELPEVRKNAQDKR 178 (354)
T ss_pred HHHHHHHHHcCCcchhhhcCCCcchh-------hHhhhcCCccceEhhheEEEEEEEeccCcccccccccccccccccCC
Confidence 999999999987 5777777776665 788888999996 57999999999 566
Q ss_pred cce-------------eeccCCCchhhhhhhcccCCC---------ceEEEEEEEEEEec
Q 039163 221 GRL-------------LDRKSMGEDLFWAIRGGGGAS---------FGVVVAWKLRLVTV 258 (551)
Q Consensus 221 G~i-------------v~~~~~~~dLf~a~rG~g~g~---------fGiVt~~~~~~~p~ 258 (551)
|++ ++. .+.|+.|+||-+.--. --||++++|++.|.
T Consensus 179 g~~~~~~~~~~~~~~~~~~--~~~e~~f~YR~S~f~~~~~~~~~~~~~iIl~v~f~L~~~ 236 (354)
T PRK14648 179 GECLGLDGGPFTCSSFQTV--FARAGDWGYKRSPFQSPHGVELHAGRRLILSLCVRLTPG 236 (354)
T ss_pred CceecccccccccccceEe--cHHHcCccCCcccCCCCccccccCCCEEEEEEEEEEcCC
Confidence 776 222 2469999999764221 13999999999875
No 31
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.57 E-value=4.9e-15 Score=147.31 Aligned_cols=169 Identities=21% Similarity=0.244 Sum_probs=133.0
Q ss_pred ecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCC---CEEEEEeeCCcce-EEcCCCCEEEEcCCCCHHHHHHH
Q 039163 93 TPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHV---PFVVIDLINLCKI-SVDAKQKTAWVQSGATLGQLYYR 168 (551)
Q Consensus 93 ~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~---~gvvidl~~l~~i-~id~~~~~v~v~~G~~~~~l~~~ 168 (551)
+-+.+.+||+-++..+..+-+-.+..+.-+|...+....+ ..--|++..|..| ++|.++.+|+|+|+++++++.++
T Consensus 59 H~qrVkkIqkqlkew~d~s~k~~lctaRp~Wltvs~r~~dykk~h~~v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~ 138 (543)
T KOG1262|consen 59 HQQRVKKIQKQLKEWLDDSEKKPLCTARPGWLTVSTRFFDYKKCHHQVPIDELHDILELDEEKMTVRVEPLVTMGQISKF 138 (543)
T ss_pred HHHHHHHHHHHHHhhccccccCcccccCCCeEEEEEecchhhhhcccCCHHHHhHHHhcchhcceEEecCCccHHHHHHH
Confidence 3445566777777666555444444455555543332211 1244666655555 89999999999999999999999
Q ss_pred HHHhcCCcccCCCCCCcccccccccCCCCCCcccccCchhhheeeEEEEecCcceee--ccCCCchhhhhhhcccCCCce
Q 039163 169 IAEKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGLAADNIVDAHLIDAHGRLLD--RKSMGEDLFWAIRGGGGASFG 246 (551)
Q Consensus 169 l~~~g~~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G~~~D~v~~~~vV~a~G~iv~--~~~~~~dLf~a~rG~g~g~fG 246 (551)
|.+.|+.|++.+-. ...++||++.|-|+-..|.+||+-.+.+.+.|||+|||++++ .+++++|||+|+-.+. |++|
T Consensus 139 lip~g~tLaV~~El-dDlTvGGLinG~Gies~ShkyGlfq~~~~aYEvVladGelv~~t~dne~sdLfyaiPWSq-GTlg 216 (543)
T KOG1262|consen 139 LIPKGYTLAVLPEL-DDLTVGGLINGVGIESSSHKYGLFQHICTAYEVVLADGELVRVTPDNEHSDLFYAIPWSQ-GTLG 216 (543)
T ss_pred hccCCceeeeeccc-ccceecceeeecccccccchhhhHHhhhheeEEEecCCeEEEecCCcccCceEEEccccc-Cchh
Confidence 99998877766544 347889999999999999999999999999999999999996 4557899999999998 8999
Q ss_pred EEEEEEEEEEecCceEE
Q 039163 247 VVVAWKLRLVTVPSTVT 263 (551)
Q Consensus 247 iVt~~~~~~~p~~~~~~ 263 (551)
..+.+++|+.|..+.+.
T Consensus 217 fLVaatiriIkvK~Yvk 233 (543)
T KOG1262|consen 217 FLVAATIRIIKVKKYVK 233 (543)
T ss_pred eeeeeEEEEEeccceEE
Confidence 99999999999988664
No 32
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.40 E-value=1.5e-12 Score=128.91 Aligned_cols=148 Identities=22% Similarity=0.192 Sum_probs=118.5
Q ss_pred CceEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEeeC-CcceEEcCCCCEEEEcCCCCHHHH
Q 039163 87 KPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLIN-LCKISVDAKQKTAWVQSGATLGQL 165 (551)
Q Consensus 87 ~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvidl~~-l~~i~id~~~~~v~v~~G~~~~~l 165 (551)
...+++ |+|++|+++++ ++|+.+.|+|+|....+.+.+ |+||.+.+ ++.++++. +|++|+.|.+|
T Consensus 20 ~A~~~~-p~~~~~l~~~~------~~p~~vlG~GSNlL~~D~g~~--g~vI~l~~~~~~~~~~~-----~a~AG~~~~~l 85 (273)
T PRK14651 20 PAELWT-VETHEQLAEAT------EAPYRVLGGGSNLLVSDAGVP--ERVIRLGGEFAEWDLDG-----WVGGGVPLPGL 85 (273)
T ss_pred eEEEEe-cCCHHHHHHHH------CCCeEEEeceeEEEEcCCCcc--eEEEEECCcceeEeECC-----EEECCCcHHHH
Confidence 344566 99999999988 489999999999876665554 88898865 66666532 69999999999
Q ss_pred HHHHHHhcC-CcccCCCCCCcccccccccCCCCCCcccccCc-hhhheeeEEEEecCcceeeccCCCchhhhhhhcccCC
Q 039163 166 YYRIAEKSK-NLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGL-AADNIVDAHLIDAHGRLLDRKSMGEDLFWAIRGGGGA 243 (551)
Q Consensus 166 ~~~l~~~g~-~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G~-~~D~v~~~~vV~a~G~iv~~~~~~~dLf~a~rG~g~g 243 (551)
..++.++|+ |+++..|.++||| |+.-++.+.||. ..|.|.++++++ +|++++.. +.|+.|+||-+.-.
T Consensus 86 ~~~~~~~gl~GlE~l~gIPGTVG-------GAv~mNaGayG~ei~d~l~~V~~~~-~g~~~~~~--~~e~~f~YR~S~~~ 155 (273)
T PRK14651 86 VRRAARLGLSGLEGLVGIPAQVG-------GAVKMNAGTRFGEMADALHTVEIVH-DGGFHQYS--PDELGFGYRHSGLP 155 (273)
T ss_pred HHHHHHCCCcchhhhcCCCcchh-------hHHHhhCCccccChheeEEEEEEEE-CCCEEEEE--HHHccccccccCCC
Confidence 999999987 6777777777666 788888899995 579999999997 89988743 36999999965422
Q ss_pred CceEEEEEEEEEEec
Q 039163 244 SFGVVVAWKLRLVTV 258 (551)
Q Consensus 244 ~fGiVt~~~~~~~p~ 258 (551)
.--||++++|++.|.
T Consensus 156 ~~~iIl~a~f~l~~~ 170 (273)
T PRK14651 156 PGHVVTRVRLKLRPS 170 (273)
T ss_pred CCEEEEEEEEEECCC
Confidence 214999999999874
No 33
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.09 E-value=3.7e-10 Score=110.97 Aligned_cols=141 Identities=13% Similarity=0.131 Sum_probs=110.2
Q ss_pred CceEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEeeCCcceEEcCCCCEEEEcCCCCHHHHH
Q 039163 87 KPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKISVDAKQKTAWVQSGATLGQLY 166 (551)
Q Consensus 87 ~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvidl~~l~~i~id~~~~~v~v~~G~~~~~l~ 166 (551)
...+++.|++.+ + ++|+.+.|+|+|....+...+ +++ -+++|+.++++. .+++|++|+.|.+|.
T Consensus 18 ~A~~~~~~~~~~-l----------~~p~~vlG~GSNlLv~D~g~~--~vv-~~~~~~~~~~~~--~~v~~~AG~~l~~l~ 81 (257)
T PRK13904 18 PLEVLVLEEIDD-F----------SQDGQIIGGANNLLISPNPKN--LAI-LGKNFDYIKIDG--ECLEIGGATKSGKIF 81 (257)
T ss_pred eEEEEEEechhh-h----------CCCeEEEeceeEEEEecCCcc--EEE-EccCcCeEEEeC--CEEEEEcCCcHHHHH
Confidence 556677788887 5 799999999999876555432 554 345688888854 489999999999999
Q ss_pred HHHHHhcC-CcccCCCCCCcccccccccCCCCCCcccccCc-hhhheeeEEEEecCcceeeccCCCchhhhhhhcccCCC
Q 039163 167 YRIAEKSK-NLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGL-AADNIVDAHLIDAHGRLLDRKSMGEDLFWAIRGGGGAS 244 (551)
Q Consensus 167 ~~l~~~g~-~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G~-~~D~v~~~~vV~a~G~iv~~~~~~~dLf~a~rG~g~g~ 244 (551)
+++.++|+ |+++..|.++||| |+.-++.+.||. ..|.|.++++++ |+ + ...|+.|+||-+.-
T Consensus 82 ~~~~~~gl~GlE~l~gIPGtVG-------GAv~mNaGa~g~ei~d~l~~V~~~~--~~-~----~~~e~~f~YR~S~~-- 145 (257)
T PRK13904 82 NYAKKNNLGGFEFLGKLPGTLG-------GLVKMNAGLKEYEISNNLESICTNG--GW-I----EKEDIGFGYRSSGI-- 145 (257)
T ss_pred HHHHHCCCchhhhhcCCCccHH-------HHHHhcCCcCccchheeEEEEEEEe--eE-E----eHHHCcccccCcCC--
Confidence 99999987 5777777777665 777888888995 579999999998 42 2 24799999996542
Q ss_pred ceEEEEEEEEEEecC
Q 039163 245 FGVVVAWKLRLVTVP 259 (551)
Q Consensus 245 fGiVt~~~~~~~p~~ 259 (551)
-.||++++||+.|..
T Consensus 146 ~~iIl~a~f~l~~~~ 160 (257)
T PRK13904 146 NGVILEARFKKTHGF 160 (257)
T ss_pred CcEEEEEEEEECCCC
Confidence 249999999998754
No 34
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=94.68 E-value=0.043 Score=51.17 Aligned_cols=77 Identities=19% Similarity=0.274 Sum_probs=51.0
Q ss_pred ceEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCC-ccccCCCEEEEEeeCCcce-EEcCCCCEEEEcCCCCHHHH
Q 039163 88 PQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGL-SYVSHVPFVVIDLINLCKI-SVDAKQKTAWVQSGATLGQL 165 (551)
Q Consensus 88 p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~-~~~~~~~gvvidl~~l~~i-~id~~~~~v~v~~G~~~~~l 165 (551)
+.-++.|+|.+|+.++++ .+-...+.+||++.... ........++||++++... .|..+++.+++|+++++.++
T Consensus 2 ~~~~~~P~sl~ea~~ll~----~~~~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~l 77 (171)
T PF00941_consen 2 PFEYFRPKSLEEALELLA----KGPDARIVAGGTDLGVQMREGILSPDVLIDLSRIPELNGISEDDGGLRIGAAVTLSEL 77 (171)
T ss_dssp S-EEEE-SSHHHHHHHHH----HGTTEEEESS-TTHHHHHHTTS---SEEEEGTTSGGGG-EEEETSEEEEETTSBHHHH
T ss_pred CeEEEccCCHHHHHHHHh----cCCCCEEEeCCCccchhcccCccccceEEEeEEecccccEEEeccEEEECCCccHHHH
Confidence 346789999999999998 23368999999985311 1110012588999876443 23334679999999999999
Q ss_pred HHH
Q 039163 166 YYR 168 (551)
Q Consensus 166 ~~~ 168 (551)
.+.
T Consensus 78 ~~~ 80 (171)
T PF00941_consen 78 EES 80 (171)
T ss_dssp HHH
T ss_pred hhc
Confidence 876
No 35
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=94.59 E-value=0.075 Score=53.19 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=25.6
Q ss_pred hhhhhhhhhccHHHHHHhHhhcCCCCCCCCCCCC
Q 039163 505 SIWGNKYFKNNFKRLVHVKTMADPHNFFRNEQSI 538 (551)
Q Consensus 505 ~~~g~~yyg~n~~RL~~IK~kyDP~nvF~~~qsI 538 (551)
+.| +..||+.++|+++.|++|||.+++.-.|.|
T Consensus 248 ~dW-~~HFG~~W~~f~~~K~~yDP~~IL~PGq~I 280 (281)
T PF09265_consen 248 EDW-RRHFGPKWERFVERKRRYDPKAILAPGQGI 280 (281)
T ss_dssp HHH-HHHHGHHHHHHHHHHHHH-TT--B-GGG-S
T ss_pred HHH-HHHhchHHHHHHHHHHhCCchhhcCCCCCC
Confidence 478 578999999999999999999999999988
No 36
>PRK09799 putative oxidoreductase; Provisional
Probab=94.29 E-value=0.13 Score=51.33 Aligned_cols=140 Identities=14% Similarity=0.130 Sum_probs=83.3
Q ss_pred EEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEeeCCcce-EEcCCCCEEEEcCCCCHHHHHHH
Q 039163 90 VIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKI-SVDAKQKTAWVQSGATLGQLYYR 168 (551)
Q Consensus 90 ~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvidl~~l~~i-~id~~~~~v~v~~G~~~~~l~~~ 168 (551)
-+..|+|.+|..++++ +++-...+.+||++..... ......++||++++ .. .|..+++.+++|+++++.++.+.
T Consensus 4 ~y~~P~sl~Ea~~ll~---~~~~~a~ilAGGT~L~~~~-~~~~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~~~ 78 (258)
T PRK09799 4 QFFRPDSVEQALELKR---RYQDEAVWFAGGSKLNATP-TRTDKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLRDA 78 (258)
T ss_pred cEeCCCCHHHHHHHHH---hCCCCCEEEecCCChHhhh-CCCCCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHHhC
Confidence 4678999999998876 3433467899999973211 11123688999975 43 34445679999999999999763
Q ss_pred H------HHhcCCcccCCCCCCcccccccccCCCCCCcccccCchhhh-----eeeEEEEecCcceeeccCCCchhhhhh
Q 039163 169 I------AEKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLRKFGLAADN-----IVDAHLIDAHGRLLDRKSMGEDLFWAI 237 (551)
Q Consensus 169 l------~~~g~~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G~~~D~-----v~~~~vV~a~G~iv~~~~~~~dLf~a~ 237 (551)
. .+.-..+ -.+-.-...++||.+..+-- ..|. .++.+|+..+++.+.. .|+|-
T Consensus 79 ~~~~~~L~~a~~~v-as~qIRN~aTiGGNl~~a~p---------~sD~~p~LlAldA~v~l~~~r~vpl----~~f~~-- 142 (258)
T PRK09799 79 RFIPAALREALGFV-YSRHLRNQSTIGGEIAARQE---------ESVLLPVLLALDAELVFGNGETLSI----EDYLA-- 142 (258)
T ss_pred cccHHHHHHHHHHh-CCHHHhccchhHHHhhcCCc---------cHHHHHHHHHcCCEEEEecCcEEeH----HHhcC--
Confidence 2 1110000 01123344567787764321 1333 3677777777754432 34442
Q ss_pred hcccCCCceEEEEEEEE
Q 039163 238 RGGGGASFGVVVAWKLR 254 (551)
Q Consensus 238 rG~g~g~fGiVt~~~~~ 254 (551)
|.. + .|||++.+.
T Consensus 143 -g~~-~--Eil~~I~iP 155 (258)
T PRK09799 143 -CPC-D--RLLTEIIIP 155 (258)
T ss_pred -CCC-C--cEEEEEEcC
Confidence 222 1 589988765
No 37
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=92.97 E-value=0.28 Score=48.88 Aligned_cols=140 Identities=16% Similarity=0.138 Sum_probs=81.1
Q ss_pred EEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCC-CCccccCCCEEEEEeeCC--cceEEcCCCCEEEEcCCCCHHHHHH
Q 039163 91 IITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFE-GLSYVSHVPFVVIDLINL--CKISVDAKQKTAWVQSGATLGQLYY 167 (551)
Q Consensus 91 vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~-g~~~~~~~~gvvidl~~l--~~i~id~~~~~v~v~~G~~~~~l~~ 167 (551)
++.|+|.+|..++++ +++-.-.+.+||++.. ... .....++||++++ +.|+. +++.+++|+++++.++..
T Consensus 4 y~~P~sl~Ea~~ll~---~~~~~a~~lAGGTdL~~~~~--~~~~~~lIdl~~ieL~~I~~--~~~~l~IGA~~t~~~l~~ 76 (257)
T TIGR03312 4 FFRPESTIQALELKK---RHTGVAVWFAGGSKLNATPT--RTDKKVAISLDKLALDKIEL--QGGALHIGAMCHLQSLID 76 (257)
T ss_pred eECCCCHHHHHHHHH---hCCCCCEEEecCcchhhhhc--ccCCCEEEEcCCCCCCcEEe--cCCEEEEEeCCcHHHHHh
Confidence 578999999988766 3433457789999974 222 1112578999875 44444 457899999999999875
Q ss_pred H------HHHhcCCcccCCCCCCcccccccccCCCCCCcccccC--chhhheeeEEEEecCcceeeccCCCchhhhhhhc
Q 039163 168 R------IAEKSKNLGFPGGVCPTVGVGGHFSGGGYGIMLRKFG--LAADNIVDAHLIDAHGRLLDRKSMGEDLFWAIRG 239 (551)
Q Consensus 168 ~------l~~~g~~l~~~~g~~~~vgvgG~~~gGg~g~~~~~~G--~~~D~v~~~~vV~a~G~iv~~~~~~~dLf~a~rG 239 (551)
. |.+.-. ..-.+-..+..++||.+..+--. + ..+=..++.+|+..+++.+.. .|+|-+
T Consensus 77 ~~~~~~~L~~aa~-~va~~qIRN~gTlGGNl~~a~p~------~D~~~~LlaldA~v~l~~~r~vp~----~dF~~g--- 142 (257)
T TIGR03312 77 NELTPAALKEALG-FVYSRHIRNQATIGGEIAAFQSE------SLLLPVLLALKATVVLANASQMDI----EDYLAS--- 142 (257)
T ss_pred CcchHHHHHHHHH-HhCCHHHhccccHHHHhhcCCCc------hHHHHHHHHcCCEEEEecCcEEeH----HHhcCC---
Confidence 2 222110 00112334556778887644211 1 111123566777666644422 344432
Q ss_pred ccCCCceEEEEEEEE
Q 039163 240 GGGASFGVVVAWKLR 254 (551)
Q Consensus 240 ~g~g~fGiVt~~~~~ 254 (551)
.. + -+||++.+.
T Consensus 143 ~~-~--Ell~~V~iP 154 (257)
T TIGR03312 143 EQ-R--ELIVEVIIP 154 (257)
T ss_pred CC-C--cEEEEEEcC
Confidence 22 2 488888765
No 38
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=92.01 E-value=0.38 Score=52.18 Aligned_cols=152 Identities=18% Similarity=0.187 Sum_probs=86.3
Q ss_pred ceEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCC-CCccccCCCEEEEEeeCCcce-EEcCCCCEEEEcCCCCHHHH
Q 039163 88 PQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFE-GLSYVSHVPFVVIDLINLCKI-SVDAKQKTAWVQSGATLGQL 165 (551)
Q Consensus 88 p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~-g~~~~~~~~gvvidl~~l~~i-~id~~~~~v~v~~G~~~~~l 165 (551)
..-+++|+|.+|+.++++. +. ...+.+||++.. ...........+||++++..+ .|..+++.+++|+++++.++
T Consensus 192 ~~~~~~P~sl~Ea~~ll~~---~~-~a~lvAGGTdl~~~~~~~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~el 267 (467)
T TIGR02963 192 GERFIAPTTLDDLAALKAA---HP-DARIVAGSTDVGLWVTKQMRDLPDVIYVGQVAELKRIEETDDGIEIGAAVTLTDA 267 (467)
T ss_pred CceEECCCCHHHHHHHHhh---CC-CCEEEecCcchHHHHhcCCCCCCeEEECCCChhhccEEEcCCEEEEecCCcHHHH
Confidence 4468999999999988763 32 467899999963 211111123688999986543 23344578999999999999
Q ss_pred HHHHHHhcCCc-----ccC-CCCCCcccccccccCCCCCCcccccCchhhhe-----eeE--EEEecCcceeeccCCCch
Q 039163 166 YYRIAEKSKNL-----GFP-GGVCPTVGVGGHFSGGGYGIMLRKFGLAADNI-----VDA--HLIDAHGRLLDRKSMGED 232 (551)
Q Consensus 166 ~~~l~~~g~~l-----~~~-~g~~~~vgvgG~~~gGg~g~~~~~~G~~~D~v-----~~~--~vV~a~G~iv~~~~~~~d 232 (551)
.+.+.++-..| .+. +-.-...+|||.+..+.- ..|.. +++ ++...+|+..-. =.|
T Consensus 268 ~~~l~~~~p~L~~a~~~ias~qIRN~aTiGGNI~~asP---------~sD~~p~LlALdA~v~l~~~~G~R~vp---l~d 335 (467)
T TIGR02963 268 YAALAKRYPELGELLRRFASLQIRNAGTLGGNIANGSP---------IGDSPPALIALGARLTLRKGEGRRTLP---LED 335 (467)
T ss_pred HHHHHHHhHHHHHHHHHhCCHHHcCceecccccccCCC---------chHHHHHHHHcCCEEEEEcCCCcEEEe---HHH
Confidence 87554431000 011 133455667787765321 13432 333 444455632211 136
Q ss_pred hhhhhhcccCCCceEEEEEEEEE
Q 039163 233 LFWAIRGGGGASFGVVVAWKLRL 255 (551)
Q Consensus 233 Lf~a~rG~g~g~fGiVt~~~~~~ 255 (551)
+|-+++--.-..=-||+++.+..
T Consensus 336 F~~g~~kt~L~~~EiI~~I~iP~ 358 (467)
T TIGR02963 336 FFIDYGKTDRQPGEFVEALHVPR 358 (467)
T ss_pred hhcccccccCCCCceEEEEEecC
Confidence 66544321101114999888763
No 39
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=90.02 E-value=1 Score=44.33 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.2
Q ss_pred ccHHHHHHhHhhcCCCCCCCCC
Q 039163 514 NNFKRLVHVKTMADPHNFFRNE 535 (551)
Q Consensus 514 ~n~~RL~~IK~kyDP~nvF~~~ 535 (551)
.++++..+||+++||+|+|.+.
T Consensus 176 Pr~~dFlavR~~lDP~G~F~N~ 197 (257)
T PLN00107 176 KKAGEFLKVKERLDPEGLFSSE 197 (257)
T ss_pred cCHHHHHHHHHHhCCCCccCCH
Confidence 6899999999999999999875
No 40
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=89.85 E-value=0.47 Score=48.25 Aligned_cols=73 Identities=12% Similarity=0.147 Sum_probs=51.2
Q ss_pred EEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCC-CCccccCCCEEEEEeeCCc---ceEEcCCCCEEEEcCCCCHHHH
Q 039163 90 VIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFE-GLSYVSHVPFVVIDLINLC---KISVDAKQKTAWVQSGATLGQL 165 (551)
Q Consensus 90 ~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~-g~~~~~~~~gvvidl~~l~---~i~id~~~~~v~v~~G~~~~~l 165 (551)
-++.|+|.+|..++++. +. ...+.+||+++. ...........+||++++. .|+.. +++.+++|+++++.++
T Consensus 6 ~~~~P~sl~Ea~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdl~~i~eL~~I~~~-~~~~l~IGA~vt~~~l 80 (291)
T PRK09971 6 EYHEAATLEEAIELLAD---NP-QAKLIAGGTDVLIQLHHHNDRYRHLVSIHNIAELRGITLA-EDGSIRIGAATTFTQI 80 (291)
T ss_pred ceeCCCCHHHHHHHHHh---CC-CCEEEeccchHHHHHhCCCCCCCeEEEcCCChhhhCeEec-CCCEEEEEeCCcHHHH
Confidence 57889999999988773 22 457899999963 1111111236889999765 44432 3467999999999999
Q ss_pred HH
Q 039163 166 YY 167 (551)
Q Consensus 166 ~~ 167 (551)
.+
T Consensus 81 ~~ 82 (291)
T PRK09971 81 IE 82 (291)
T ss_pred hc
Confidence 75
No 41
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=89.31 E-value=0.7 Score=47.52 Aligned_cols=98 Identities=19% Similarity=0.246 Sum_probs=61.1
Q ss_pred EEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCC-CccccCCCEEEEEeeCC---cceEEcCCCCEEEEcCCCCHHHH
Q 039163 90 VIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEG-LSYVSHVPFVVIDLINL---CKISVDAKQKTAWVQSGATLGQL 165 (551)
Q Consensus 90 ~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g-~~~~~~~~gvvidl~~l---~~i~id~~~~~v~v~~G~~~~~l 165 (551)
-++.|+|.+|..++++- ++ .-.+.+||++... .-........+||++++ +.|+. +.+.+++|+++++.++
T Consensus 6 ~~~~P~sl~eA~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdi~~I~eL~~I~~--~~~~l~IGA~vT~~~l 79 (321)
T TIGR03195 6 RTLRPASLADAVAALAA---HP-AARPLAGGTDLLPNLRRGLGQPETLVDLTGIDEIAQLST--LADGLRIGAGVTLAAL 79 (321)
T ss_pred eEECCCCHHHHHHHHhh---CC-CCEEEEccchHHHHHhcccCCCCeEEECCCChhhccEEe--cCCEEEEeccCcHHHH
Confidence 57899999999888763 22 3468999998521 11111123688999875 45554 4568999999999998
Q ss_pred HHH---------HHHhcCCcccCCCCCCcccccccccC
Q 039163 166 YYR---------IAEKSKNLGFPGGVCPTVGVGGHFSG 194 (551)
Q Consensus 166 ~~~---------l~~~g~~l~~~~g~~~~vgvgG~~~g 194 (551)
.+. |.+.-. ..-.+..-...+|||.+.+
T Consensus 80 ~~~~~i~~~~p~L~~a~~-~ias~qIRN~aTiGGNi~~ 116 (321)
T TIGR03195 80 AEDALVRTRWPALAQAAR-AVAGPTHRAAATLGGNLCL 116 (321)
T ss_pred hhChhhHhHhHHHHHHHH-HhCCHHHhCceecHHhhhc
Confidence 542 221100 0001233455678898875
No 42
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=86.82 E-value=0.82 Score=45.75 Aligned_cols=97 Identities=11% Similarity=0.154 Sum_probs=59.7
Q ss_pred cCCHHHHHHHHHHHHhcCCcEEEEcCCCCCC-CCccc-cCCCEEEEEeeCCcce-EEcCCCCEEEEcCCCCHHHHHHH--
Q 039163 94 PLDVSQVQAAIKCSKKQGLQIRVRSGGHDFE-GLSYV-SHVPFVVIDLINLCKI-SVDAKQKTAWVQSGATLGQLYYR-- 168 (551)
Q Consensus 94 p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~-g~~~~-~~~~gvvidl~~l~~i-~id~~~~~v~v~~G~~~~~l~~~-- 168 (551)
|+|.+|+.++++.. . ...+.+||+++. ..... ......+||++++... .|..+++.+++|+++++.++.+.
T Consensus 1 P~sl~ea~~ll~~~---~-~a~ivaGgT~l~~~~~~~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~~~~ 76 (264)
T TIGR03199 1 PAALDEAWSLLEKA---P-DSTFVSGSTLLQLQWEKGTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRKNPL 76 (264)
T ss_pred CCCHHHHHHHHHhC---C-CCEEEEccChHHHHHhcCcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhhChH
Confidence 78888888887742 2 357899999863 21111 0113688999986554 34455679999999999999642
Q ss_pred -------HHHhcCCcccCCCCCCcccccccccCC
Q 039163 169 -------IAEKSKNLGFPGGVCPTVGVGGHFSGG 195 (551)
Q Consensus 169 -------l~~~g~~l~~~~g~~~~vgvgG~~~gG 195 (551)
|.+.- ...-.+-.-...++||.+..+
T Consensus 77 i~~~~p~L~~a~-~~ia~~qIRN~aTlGGNl~~~ 109 (264)
T TIGR03199 77 IKRALPCFVDAA-SAIAAPGVRNRATIGGNIASG 109 (264)
T ss_pred hHhHhHHHHHHH-HHhcCHHHhcceecHHhccCc
Confidence 11110 000012334556788888654
No 43
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=85.57 E-value=1.4 Score=42.89 Aligned_cols=76 Identities=11% Similarity=0.107 Sum_probs=40.6
Q ss_pred EEEEEEeecCCCccchHHHHHHHHHHHhhcccccCCCCCcccccCCCCcCCCCCCCCchhhhhhhhhhhhhc-cHHHHHH
Q 039163 443 YKIFYGVSWGGDGISQRHIDWIRSLYSYMTPYVSKNPREAYVNYRDLDIGINNPGYTSIEQASIWGNKYFKN-NFKRLVH 521 (551)
Q Consensus 443 ~~i~~~~~W~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~Y~Nyad~dl~~~~~~~~~~~~~~~~g~~yyg~-n~~RL~~ 521 (551)
.++.+...-.++++.+...++++++++.+..+. +..+. -+. .+ . ....|=...+|+ .+.-+++
T Consensus 169 ~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----G~is~--eHG-~G--------~-~k~~~~~~~~~~~~~~~~~~ 232 (248)
T PF02913_consen 169 LHLYILFDPRDPEEPERAEALWDELYELVLELG----GSISA--EHG-IG--------K-LKKPYLEEEYGPAALRLMRA 232 (248)
T ss_dssp EEEEEEEETTSHHHHHHHHHHHHHHHHHHHHTT-----BBSS--SSG-GG--------H-HHHHHHCHHCHHHHHHHHHH
T ss_pred EEEEeecccchHHHHHHHHHHHHHHHHHHHhcc----ccccc--ccc-hh--------h-hhHHHHHHhcchHHHHHHHH
Confidence 344444333444566667777777766665541 11111 111 11 0 112233344454 7999999
Q ss_pred hHhhcCCCCCCCC
Q 039163 522 VKTMADPHNFFRN 534 (551)
Q Consensus 522 IK~kyDP~nvF~~ 534 (551)
||+.+||+|+++-
T Consensus 233 iK~~~DP~~ilNP 245 (248)
T PF02913_consen 233 IKQAFDPNGILNP 245 (248)
T ss_dssp HHHHH-TTS-BST
T ss_pred hhhccCCccCCCC
Confidence 9999999999974
No 44
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=82.77 E-value=2.7 Score=41.80 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=17.0
Q ss_pred ccHHHHHHhHhhcCCCCCCCCC
Q 039163 514 NNFKRLVHVKTMADPHNFFRNE 535 (551)
Q Consensus 514 ~n~~RL~~IK~kyDP~nvF~~~ 535 (551)
+++++..++|+++||+|+|.+.
T Consensus 233 p~~~~F~~~r~~~DP~g~F~n~ 254 (259)
T PF04030_consen 233 PRLDDFLAVRKKLDPQGVFLND 254 (259)
T ss_dssp TTHHHHHHHHHHH-TT-TT--H
T ss_pred cCHHHHHHHHHHhCCCCCCCCH
Confidence 7999999999999999999763
No 45
>PLN02906 xanthine dehydrogenase
Probab=81.90 E-value=2.1 Score=52.56 Aligned_cols=79 Identities=9% Similarity=0.099 Sum_probs=54.9
Q ss_pred eEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCC-CccccCCCEEEEEeeCCcce-EEcCCCCEEEEcCCCCHHHHH
Q 039163 89 QVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEG-LSYVSHVPFVVIDLINLCKI-SVDAKQKTAWVQSGATLGQLY 166 (551)
Q Consensus 89 ~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g-~~~~~~~~gvvidl~~l~~i-~id~~~~~v~v~~G~~~~~l~ 166 (551)
.-++.|+|.+|+.++++. +. ...+.+||++... .........++||++++..+ .|..+++.++||+++++.++.
T Consensus 229 ~~~~~P~tl~ea~~ll~~---~~-~a~ivAGGTdl~~~~~~~~~~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~el~ 304 (1319)
T PLN02906 229 LTWYRPTSLQHLLELKAE---YP-DAKLVVGNTEVGIEMRFKNAQYPVLISPTHVPELNAIKVKDDGLEIGAAVRLSELQ 304 (1319)
T ss_pred ceEECcCCHHHHHHHHHh---CC-CCEEEEcCchhHHHhhhccCCCCeEEECCCChhhhcEEecCCEEEEecCCcHHHHH
Confidence 357899999999987663 22 3578899999732 11111223688999975544 343455689999999999999
Q ss_pred HHHHH
Q 039163 167 YRIAE 171 (551)
Q Consensus 167 ~~l~~ 171 (551)
+.|.+
T Consensus 305 ~~l~~ 309 (1319)
T PLN02906 305 NLFRK 309 (1319)
T ss_pred HHHHH
Confidence 86543
No 46
>PLN00192 aldehyde oxidase
Probab=79.24 E-value=4.3 Score=49.96 Aligned_cols=83 Identities=13% Similarity=0.173 Sum_probs=56.1
Q ss_pred ceEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEeeCCcce-EEcCCCCEEEEcCCCCHHHHH
Q 039163 88 PQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKI-SVDAKQKTAWVQSGATLGQLY 166 (551)
Q Consensus 88 p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvidl~~l~~i-~id~~~~~v~v~~G~~~~~l~ 166 (551)
..-++.|+|.+|+.++++.....+-...+..||+++.-.-. .....++||++++..+ .|..+++.++||+++++.++.
T Consensus 233 ~~~~~~P~sl~ea~~ll~~~~~~~~~a~lvAGgTdl~~~k~-~~~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~el~ 311 (1344)
T PLN00192 233 RYRWYTPVSVEELQSLLESNNFDGVSVKLVVGNTGTGYYKD-EELYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISKAI 311 (1344)
T ss_pred CceEECcCCHHHHHHHHHhCCCCCCCeEEEEeCCcceeeec-cCCCCeEEEcCCChhhhcEEecCCEEEEeecCcHHHHH
Confidence 34688999999999887632101124678899999632211 2223688999975443 233455789999999999998
Q ss_pred HHHHH
Q 039163 167 YRIAE 171 (551)
Q Consensus 167 ~~l~~ 171 (551)
..+..
T Consensus 312 ~~l~~ 316 (1344)
T PLN00192 312 EALRE 316 (1344)
T ss_pred HHHHh
Confidence 76554
No 47
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=78.92 E-value=4.5 Score=49.75 Aligned_cols=78 Identities=17% Similarity=0.154 Sum_probs=54.6
Q ss_pred eEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCC-CccccCCCEEEEEeeCCcce-EEcCCCCEEEEcCCCCHHHHH
Q 039163 89 QVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEG-LSYVSHVPFVVIDLINLCKI-SVDAKQKTAWVQSGATLGQLY 166 (551)
Q Consensus 89 ~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g-~~~~~~~~gvvidl~~l~~i-~id~~~~~v~v~~G~~~~~l~ 166 (551)
.-++.|+|.+|+.++++. +. ..++..||+++.- ......+..++||++++..+ .|..+++.++||+++++.++.
T Consensus 237 ~~~~~P~tl~ea~~ll~~---~~-~a~lvAGGTdl~~~~k~~~~~~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~el~ 312 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFK---YP-QAPVVMGNTSVGPEVKFKGVFHPVIISPDRIEELSVVNHTGDGLTLGAGLSLAQVK 312 (1330)
T ss_pred ceEECCCCHHHHHHHHHh---CC-CCEEEecCcchHHHhhhccCCCCeEEECCCChhhhcEEEcCCEEEEeccccHHHHH
Confidence 357899999999988764 22 3578899999732 21111112578999875544 344456789999999999998
Q ss_pred HHHH
Q 039163 167 YRIA 170 (551)
Q Consensus 167 ~~l~ 170 (551)
+.|.
T Consensus 313 ~~l~ 316 (1330)
T TIGR02969 313 DILA 316 (1330)
T ss_pred HHHH
Confidence 8644
No 48
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=69.22 E-value=4.4 Score=43.37 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=23.3
Q ss_pred hhhhhhhh-ccHHHHHHhHhhcCCCCCCCC
Q 039163 506 IWGNKYFK-NNFKRLVHVKTMADPHNFFRN 534 (551)
Q Consensus 506 ~~g~~yyg-~n~~RL~~IK~kyDP~nvF~~ 534 (551)
.|-...|+ ..++-|++||+.+||+|+|+-
T Consensus 382 ~~~~~~~~~~~~~~~~~iK~~fDP~~ilNP 411 (413)
T TIGR00387 382 EFMPYKFNEKELETMRAIKKAFDPDNILNP 411 (413)
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCcCcCCCC
Confidence 35555556 579999999999999999974
No 49
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=69.08 E-value=8.2 Score=42.91 Aligned_cols=35 Identities=20% Similarity=0.364 Sum_probs=28.1
Q ss_pred hhhhhhhhh-ccHHHHHHhHhhcCCCCCCCCCCCCC
Q 039163 505 SIWGNKYFK-NNFKRLVHVKTMADPHNFFRNEQSIP 539 (551)
Q Consensus 505 ~~~g~~yyg-~n~~RL~~IK~kyDP~nvF~~~qsI~ 539 (551)
..|-..+|| +.++-+++||+.+||+|+++-..=|+
T Consensus 515 ~~~l~~~~g~~~~~lm~~IK~a~DP~gILNPGKi~~ 550 (555)
T PLN02805 515 MKYLEKELGIEALQTMKRIKKALDPNNIMNPGKLIP 550 (555)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcCcCCCCCceeC
Confidence 356667777 57999999999999999998766554
No 50
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=67.46 E-value=10 Score=42.24 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=20.3
Q ss_pred ccHHHHHHhHhhcCCCCCCCCC
Q 039163 514 NNFKRLVHVKTMADPHNFFRNE 535 (551)
Q Consensus 514 ~n~~RL~~IK~kyDP~nvF~~~ 535 (551)
.++++.++|++++||+++|.+.
T Consensus 482 P~~~dF~alR~~~DP~g~F~N~ 503 (557)
T TIGR01677 482 PNADKFLKVKDSYDPKGLFSSE 503 (557)
T ss_pred CCHHHHHHHHHhcCCCCccCCH
Confidence 5999999999999999999875
No 51
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=66.09 E-value=20 Score=36.21 Aligned_cols=75 Identities=16% Similarity=0.170 Sum_probs=51.4
Q ss_pred ceEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCC-ccccCCCEEEEEeeCCc-ce-EEcCCCCEEEEcCCCCHHH
Q 039163 88 PQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGL-SYVSHVPFVVIDLINLC-KI-SVDAKQKTAWVQSGATLGQ 164 (551)
Q Consensus 88 p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~-~~~~~~~gvvidl~~l~-~i-~id~~~~~v~v~~G~~~~~ 164 (551)
+..+.+|.|.+|...+++ +++ --.+.+|||++... -.......-+||++++. .. .+..+++.+++|+-+++.+
T Consensus 3 ~f~y~rp~Sv~eA~~ll~---~~~-~a~~laGGt~L~~~~k~~~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~e 78 (284)
T COG1319 3 NFEYYRPASVEEALNLLA---RAP-DAKYLAGGTDLLPLMKLGIERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLTE 78 (284)
T ss_pred ceEEECCCCHHHHHHHHH---hCC-CcEEeeCcchHHHHhhcccCCcceEEEecCChhhhceEeecCCEEEEeecccHHH
Confidence 456789999988877766 444 67899999996421 11111125678998874 22 2333566799999999999
Q ss_pred HH
Q 039163 165 LY 166 (551)
Q Consensus 165 l~ 166 (551)
+.
T Consensus 79 i~ 80 (284)
T COG1319 79 IA 80 (284)
T ss_pred HH
Confidence 86
No 52
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=64.76 E-value=15 Score=38.08 Aligned_cols=139 Identities=19% Similarity=0.164 Sum_probs=81.9
Q ss_pred ceEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCcccc-CCCEEEEEeeCCcce-EEcCCCCEEEEcCCCCHHHH
Q 039163 88 PQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVS-HVPFVVIDLINLCKI-SVDAKQKTAWVQSGATLGQL 165 (551)
Q Consensus 88 p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~-~~~gvvidl~~l~~i-~id~~~~~v~v~~G~~~~~l 165 (551)
-..++.|.+.+|...++.. .=..++..|++++.-..... .+-..+|-..++..+ +|+..++.+++|+|+++.+.
T Consensus 203 ~~r~~~P~~l~D~a~l~aa----~P~AtivAGsTDvgLwVtk~mr~l~~vi~v~~l~eL~~i~~~~~~l~iGAgvt~t~a 278 (493)
T COG4630 203 DDRFIVPATLADFADLLAA----HPGATIVAGSTDVGLWVTKQMRDLNPVIFVGHLAELRRIEVSTGGLEIGAGVTYTQA 278 (493)
T ss_pred CceeEeeccHHHHHHHHhh----CCCCEEEecCcchhhHHHHHHhhcCCeEEecchhhhheeeecCCcEEEccCccHHHH
Confidence 4467889999999888652 34678888888864222111 112345555665554 45556789999999999999
Q ss_pred HHHHHHhcCCcc--cC-CCC---CCcccccccccCCCCCCcccccCchh--hheeeEEEEecCcceee-ccCCCchhhhh
Q 039163 166 YYRIAEKSKNLG--FP-GGV---CPTVGVGGHFSGGGYGIMLRKFGLAA--DNIVDAHLIDAHGRLLD-RKSMGEDLFWA 236 (551)
Q Consensus 166 ~~~l~~~g~~l~--~~-~g~---~~~vgvgG~~~gGg~g~~~~~~G~~~--D~v~~~~vV~a~G~iv~-~~~~~~dLf~a 236 (551)
+..|..+--.|. +. -|. -+.-++||.+..|. . -|-+. =..+++.|++-.|+-.. .. =.|+|-+
T Consensus 279 ~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIangS-----P-IGDtPPaLIALgA~ltLr~g~~~RtlP--Le~~Fi~ 350 (493)
T COG4630 279 YRALAGRYPALGELWDRFGGEQVRNMGTLGGNIANGS-----P-IGDTPPALIALGATLTLRSGDGRRTLP--LEDYFIA 350 (493)
T ss_pred HHHHHhhCchHHHHHHHhcchhhhccccccccccCCC-----c-CCCCCchhhhcCcEEEEEecCCccccc--HHHHHHH
Confidence 999987521111 00 111 22334556554332 1 12221 23477788887766443 22 2588888
Q ss_pred hh
Q 039163 237 IR 238 (551)
Q Consensus 237 ~r 238 (551)
|+
T Consensus 351 Y~ 352 (493)
T COG4630 351 YG 352 (493)
T ss_pred hh
Confidence 75
No 53
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=59.68 E-value=23 Score=38.49 Aligned_cols=105 Identities=20% Similarity=0.321 Sum_probs=66.3
Q ss_pred HHHhhhcCCCCCceeEecCCCCChhhhhhccccccCcCCCCCCCceEEEecCCHHHHHHHHHHHHhc-CCcEEEE-----
Q 039163 44 FLDCLRSDNSSISQVIYTKYSPSYSSVLSSSTQNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKQ-GLQIRVR----- 117 (551)
Q Consensus 44 ~~~cl~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~-~~~~~~~----- 117 (551)
+.+-..++..++.+.++.-+=|.-+.+.. ++... ...-.|..++.|.|.|+|..+|+.|+++ ..|+.+.
T Consensus 113 Lv~kara~G~~I~gvvIsAGIP~le~A~E-lI~~L----~~~G~~yv~fKPGtIeqI~svi~IAka~P~~pIilq~egGr 187 (717)
T COG4981 113 LVQKARASGAPIDGVVISAGIPSLEEAVE-LIEEL----GDDGFPYVAFKPGTIEQIRSVIRIAKANPTFPIILQWEGGR 187 (717)
T ss_pred HHHHHHhcCCCcceEEEecCCCcHHHHHH-HHHHH----hhcCceeEEecCCcHHHHHHHHHHHhcCCCCceEEEEecCc
Confidence 33334455558899999988888887642 22222 1234788999999999999999999998 4566653
Q ss_pred cCCC-CCCCCccccCCCEEEEEe-eCCcceEEcCCCCEEEEcCCCCHH
Q 039163 118 SGGH-DFEGLSYVSHVPFVVIDL-INLCKISVDAKQKTAWVQSGATLG 163 (551)
Q Consensus 118 ggGh-~~~g~~~~~~~~gvvidl-~~l~~i~id~~~~~v~v~~G~~~~ 163 (551)
+||| ||.... ..+|-+ +.+++ .++=++.||+|.-..
T Consensus 188 aGGHHSweDld------~llL~tYs~lR~----~~NIvl~vGgGiGtp 225 (717)
T COG4981 188 AGGHHSWEDLD------DLLLATYSELRS----RDNIVLCVGGGIGTP 225 (717)
T ss_pred cCCccchhhcc------cHHHHHHHHHhc----CCCEEEEecCCcCCh
Confidence 4555 465532 122211 22322 234467788887553
No 54
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=56.26 E-value=15 Score=40.45 Aligned_cols=31 Identities=23% Similarity=0.420 Sum_probs=24.9
Q ss_pred hhhhh-ccHHHHHHhHhhcCCCCCCCCCCCCC
Q 039163 509 NKYFK-NNFKRLVHVKTMADPHNFFRNEQSIP 539 (551)
Q Consensus 509 ~~yyg-~n~~RL~~IK~kyDP~nvF~~~qsI~ 539 (551)
...|| +.++-+++||+.+||+|+++-..-|+
T Consensus 442 ~~~~g~~~~~~m~~IK~~fDP~~iLNPGk~~~ 473 (499)
T PRK11230 442 CAQFNSDEITLFHAVKAAFDPDGLLNPGKNIP 473 (499)
T ss_pred HHhcCHHHHHHHHHHHHHcCCCcCCCCCeEeC
Confidence 34455 67999999999999999998766553
No 55
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=54.77 E-value=6.4 Score=41.74 Aligned_cols=21 Identities=24% Similarity=0.638 Sum_probs=19.4
Q ss_pred ccHHHHHHhHhhcCCCCCCCC
Q 039163 514 NNFKRLVHVKTMADPHNFFRN 534 (551)
Q Consensus 514 ~n~~RL~~IK~kyDP~nvF~~ 534 (551)
.|+++..++|+++||+++|..
T Consensus 485 ~n~~~flkvr~~lDP~~lFss 505 (518)
T KOG4730|consen 485 KNLDKFLKVRKELDPKGLFSS 505 (518)
T ss_pred cChHHHHHHHHhcCccchhhh
Confidence 699999999999999999953
No 56
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=46.21 E-value=13 Score=38.88 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=18.5
Q ss_pred hcc-HHHHHHhHhhcCCCCCCCC
Q 039163 513 KNN-FKRLVHVKTMADPHNFFRN 534 (551)
Q Consensus 513 g~n-~~RL~~IK~kyDP~nvF~~ 534 (551)
..+ .+-.++||++|||.++|+-
T Consensus 323 ~~~~~~l~~~lK~~fDP~~ilnp 345 (352)
T PRK11282 323 PAPLLRIHRRLKQAFDPAGIFNP 345 (352)
T ss_pred CHHHHHHHHHHHHhcCcccCCCC
Confidence 345 6888999999999999974
No 57
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=35.06 E-value=1.9e+02 Score=30.82 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=32.4
Q ss_pred CceEEEecCCHHHHHHHHHHHHhcCCcEEEEcCC
Q 039163 87 KPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGG 120 (551)
Q Consensus 87 ~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggG 120 (551)
....|+.|+-.|-..++.+.++++|+++.-|+.|
T Consensus 260 ~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~ 293 (419)
T COG1519 260 NLLLILVPRHPERFKAVENLLKRKGLSVTRRSQG 293 (419)
T ss_pred CceEEEecCChhhHHHHHHHHHHcCCeEEeecCC
Confidence 5779999999999999999999999999999998
No 58
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.58 E-value=49 Score=30.90 Aligned_cols=37 Identities=16% Similarity=0.269 Sum_probs=31.0
Q ss_pred cCcCCCCCCCceEEEecCCHHHHHHHHHHHHhcCCcEEE
Q 039163 78 LRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKQGLQIRV 116 (551)
Q Consensus 78 ~r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~ 116 (551)
+||-. .-.|..||.+++++++.++.+.|++.+++..+
T Consensus 117 ~~We~--~GQ~KIvvk~~~e~~l~~l~~~A~~~gl~t~~ 153 (190)
T KOG3282|consen 117 RRWEN--CGQAKIVVKAESEEELMELQKDAKKLGLYTHL 153 (190)
T ss_pred HHHHH--cCCceEEEEcCCHHHHHHHHHHHHHcCCcEEE
Confidence 36865 34899999999999999999999999987543
No 59
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=31.97 E-value=1.9e+02 Score=28.87 Aligned_cols=92 Identities=16% Similarity=0.048 Sum_probs=59.3
Q ss_pred ceeEecCCCCChhhhhhccccccCcCCCCCCCceEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEE
Q 039163 56 SQVIYTKYSPSYSSVLSSSTQNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFV 135 (551)
Q Consensus 56 ~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gv 135 (551)
...|++|+-++.+.... . ...++.+|++++-+...+.|.+-.+.=|||... ... -+
T Consensus 132 ~a~vvTPNl~EA~~L~g--------------~----~~i~~~~d~~~a~~~i~~~g~~~VliKGGH~~~---~~~---D~ 187 (263)
T COG0351 132 LATVVTPNLPEAEALSG--------------L----PKIKTEEDMKEAAKLLHELGAKAVLIKGGHLEG---EAV---DV 187 (263)
T ss_pred cCeEecCCHHHHHHHcC--------------C----CccCCHHHHHHHHHHHHHhCCCEEEEcCCCCCC---Cce---eE
Confidence 35789999888777632 1 267899999999999999999999999999864 112 23
Q ss_pred EEEeeCCc---ceEEcCCCCEEEEcCCCCHHHHHHHHHHhcC
Q 039163 136 VIDLINLC---KISVDAKQKTAWVQSGATLGQLYYRIAEKSK 174 (551)
Q Consensus 136 vidl~~l~---~i~id~~~~~v~v~~G~~~~~l~~~l~~~g~ 174 (551)
+.|-..+. .-.++.. =+=|.|+++.-....-..+|.
T Consensus 188 l~~~~~~~~f~~~ri~t~---~tHGTGCTlSaAIaa~LA~G~ 226 (263)
T COG0351 188 LYDGGSFYTFEAPRIPTK---NTHGTGCTLSAAIAANLAKGL 226 (263)
T ss_pred EEcCCceEEEeccccCCC---CCCCccHHHHHHHHHHHHcCC
Confidence 33322111 1122211 246889998766554444443
No 60
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=28.76 E-value=76 Score=32.47 Aligned_cols=58 Identities=21% Similarity=0.368 Sum_probs=37.4
Q ss_pred eeEecCCCCChhhhhhccccccCcCCCCCCCceEEEecCC------HHHHHHHHHHHHhcC------CcEEEEcCCC
Q 039163 57 QVIYTKYSPSYSSVLSSSTQNLRFSTPNTPKPQVIITPLD------VSQVQAAIKCSKKQG------LQIRVRSGGH 121 (551)
Q Consensus 57 ~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~s------~~dv~~~v~~a~~~~------~~~~~~ggGh 121 (551)
+.|.-|....|...+.. -+.||. ....+++|.. +++|.++++.+.+.+ +=+.+||||.
T Consensus 18 ~vITs~~gAa~~D~~~~--~~~r~~-----~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 18 AVITSPTGAAIQDFLRT--LKRRNP-----IVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred EEEeCCchHHHHHHHHH--HHHhCC-----CcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 34445556667666542 233553 4556677765 578999999998654 5677788874
No 61
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=28.72 E-value=3.3e+02 Score=30.43 Aligned_cols=130 Identities=13% Similarity=0.186 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEeeC--Ccce---EEcCCC---CEEEEcCCCC----HHH
Q 039163 97 VSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLIN--LCKI---SVDAKQ---KTAWVQSGAT----LGQ 164 (551)
Q Consensus 97 ~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvidl~~--l~~i---~id~~~---~~v~v~~G~~----~~~ 164 (551)
.++|.+.++.+.+++-++.....-.+.+....+.+ |+||-|- |=+- -.++++ .+..|=|--. ..+
T Consensus 312 ~~eI~a~i~~~~~~~P~laMVnSdkGITNLHvPsD---VIIDASMPAmIR~~GkmW~~dG~~~Dt~avIPD~sYA~vYq~ 388 (741)
T TIGR00178 312 QEEIEADLQAVYAQRPELAMVNSDKGITNLHVPSD---VIVDASMPAMIRASGKMWGPDGKLKDTKAVIPDRCYAGVYQV 388 (741)
T ss_pred HHHHHHHHHHHHhhCCCEEEeccCCCccccCCCcC---eEEecCcHHHHhccCCccCCCCCcccceeecCCccchHHHHH
Confidence 46799999999999999999888777766666665 8888652 2110 122222 2344444333 355
Q ss_pred HHHHHHHhcCCcccCC-CCCCcccccccccCCCCCCcccccCch-----hhheeeEEEEecCcceee-ccCCCchhhhhh
Q 039163 165 LYYRIAEKSKNLGFPG-GVCPTVGVGGHFSGGGYGIMLRKFGLA-----ADNIVDAHLIDAHGRLLD-RKSMGEDLFWAI 237 (551)
Q Consensus 165 l~~~l~~~g~~l~~~~-g~~~~vgvgG~~~gGg~g~~~~~~G~~-----~D~v~~~~vV~a~G~iv~-~~~~~~dLf~a~ 237 (551)
+++.+.++|. +-... |+.+.||+ +. .-+--||.- ...==.++||+.+|+++- -..+..|+|.+|
T Consensus 389 ~I~~ck~nGa-fDp~TmGsV~NVGL---MA-----qKAEEYGSHdkTFei~~~G~v~Vvd~~G~vl~eh~Ve~GDIwRmc 459 (741)
T TIGR00178 389 VIEDCKQNGA-FDPTTMGTVPNVGL---MA-----QKAEEYGSHDKTFQIPADGVVRVVDSSGEVLLEQSVEAGDIWRMC 459 (741)
T ss_pred HHHHHHhcCC-CCcccccCCcchhH---hH-----HHHHHhcCCCcceecCCCceEEEEeCCCCEEEEeeccCCcchhhh
Confidence 6667777763 22222 66666653 21 122334421 001113788999999984 333457999988
Q ss_pred h
Q 039163 238 R 238 (551)
Q Consensus 238 r 238 (551)
.
T Consensus 460 q 460 (741)
T TIGR00178 460 Q 460 (741)
T ss_pred h
Confidence 6
No 62
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=28.61 E-value=60 Score=30.57 Aligned_cols=25 Identities=20% Similarity=0.188 Sum_probs=21.7
Q ss_pred HHHHHHHHHhcCCcEEEEcCCCCCC
Q 039163 100 VQAAIKCSKKQGLQIRVRSGGHDFE 124 (551)
Q Consensus 100 v~~~v~~a~~~~~~~~~~ggGh~~~ 124 (551)
..+.+++++++++||.|.++|.++-
T Consensus 78 fKef~e~ike~di~fiVvSsGm~~f 102 (220)
T COG4359 78 FKEFVEWIKEHDIPFIVVSSGMDPF 102 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCchH
Confidence 4567889999999999999999863
No 63
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=26.18 E-value=41 Score=37.24 Aligned_cols=20 Identities=15% Similarity=0.320 Sum_probs=18.2
Q ss_pred HHHHHHhHhhcCCCCCCCCC
Q 039163 516 FKRLVHVKTMADPHNFFRNE 535 (551)
Q Consensus 516 ~~RL~~IK~kyDP~nvF~~~ 535 (551)
+.+-++|++++||+++|.+.
T Consensus 515 ~d~F~~~R~~lDP~g~F~N~ 534 (541)
T TIGR01676 515 VDASNKARKALDPNKILSNN 534 (541)
T ss_pred HHHHHHHHHHhCCCCccccH
Confidence 78889999999999999874
No 64
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=25.70 E-value=39 Score=37.67 Aligned_cols=27 Identities=11% Similarity=0.308 Sum_probs=21.8
Q ss_pred hhhhhhhhccHHHHHHhHhhcCCCCCCCCC
Q 039163 506 IWGNKYFKNNFKRLVHVKTMADPHNFFRNE 535 (551)
Q Consensus 506 ~~g~~yyg~n~~RL~~IK~kyDP~nvF~~~ 535 (551)
.+...| + +++.+++++++||+++|.+.
T Consensus 538 ~L~~~Y-P--~d~F~~~R~~lDP~g~f~N~ 564 (573)
T PLN02465 538 RLRKRF-P--VDAFNKARKELDPKGILSNN 564 (573)
T ss_pred HHHhhC-C--HHHHHHHHHHhCCCCccCCH
Confidence 344444 4 99999999999999999764
No 65
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=23.11 E-value=1.2e+02 Score=27.48 Aligned_cols=30 Identities=17% Similarity=0.319 Sum_probs=26.1
Q ss_pred eEEEecCCHHHHHHHHHHHHhcCCcEEEEc
Q 039163 89 QVIITPLDVSQVQAAIKCSKKQGLQIRVRS 118 (551)
Q Consensus 89 ~~vv~p~s~~dv~~~v~~a~~~~~~~~~~g 118 (551)
..|+.|.+.+|+..+++.|-+..-|+.+|=
T Consensus 125 ~~v~~Ps~~~~~~~ll~~a~~~~~P~~irl 154 (156)
T cd07033 125 MTVLRPADANETAAALEAALEYDGPVYIRL 154 (156)
T ss_pred CEEEecCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 368999999999999999998877888773
No 66
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=23.03 E-value=1.9e+02 Score=24.85 Aligned_cols=41 Identities=12% Similarity=0.226 Sum_probs=33.0
Q ss_pred cCCCCCCCceEEEecCCHHHHHHHHHHHHhcCCcE-EEEcCCCC
Q 039163 80 FSTPNTPKPQVIITPLDVSQVQAAIKCSKKQGLQI-RVRSGGHD 122 (551)
Q Consensus 80 ~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~-~~~ggGh~ 122 (551)
|.. .-.+..|+.+.|++++.++.+-|++.+++. .++-.|+.
T Consensus 42 W~~--~G~~Kvvlkv~~~~el~~l~~~a~~~~l~~~~v~DAG~T 83 (113)
T PRK04322 42 WLN--EGQKKVVLKVNSEEELLELKEKAERLGLPTALIRDAGLT 83 (113)
T ss_pred HHH--CCCcEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 644 237899999999999999999999999874 55566664
No 67
>PF14658 EF-hand_9: EF-hand domain
Probab=22.28 E-value=59 Score=25.15 Aligned_cols=15 Identities=20% Similarity=0.231 Sum_probs=13.4
Q ss_pred HHHHHhHhhcCCCCC
Q 039163 517 KRLVHVKTMADPHNF 531 (551)
Q Consensus 517 ~RL~~IK~kyDP~nv 531 (551)
.+|+.+.+.+||++-
T Consensus 35 ~~Lq~l~~elDP~g~ 49 (66)
T PF14658_consen 35 SELQDLINELDPEGR 49 (66)
T ss_pred HHHHHHHHHhCCCCC
Confidence 399999999999985
No 68
>COG3360 Uncharacterized conserved protein [Function unknown]
Probab=22.18 E-value=1.5e+02 Score=22.94 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=28.9
Q ss_pred hhhheeeEEEEecCcceeeccCCCchhhhhhhcccCCCceEEEEEEEEEEe
Q 039163 207 AADNIVDAHLIDAHGRLLDRKSMGEDLFWAIRGGGGASFGVVVAWKLRLVT 257 (551)
Q Consensus 207 ~~D~v~~~~vV~a~G~iv~~~~~~~dLf~a~rG~g~g~fGiVt~~~~~~~p 257 (551)
+.|+|..+||+.-+|.++.-.. ..|-|..++-||+.+
T Consensus 33 t~~~l~wfeV~~~rg~v~~g~v--------------~hyqv~lkVgFrl~~ 69 (71)
T COG3360 33 TLDNLDWFEVVETRGHVVDGAV--------------AHYQVTLKVGFRLDD 69 (71)
T ss_pred hhhcceEEEEEeecccEeecce--------------EEEEEEEEEEEEecC
Confidence 4689999999999999885222 457888888888865
No 69
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=21.97 E-value=2.1e+02 Score=26.61 Aligned_cols=71 Identities=14% Similarity=0.013 Sum_probs=33.4
Q ss_pred ceEEEecCCHH-HHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEeeCCcceEEcCCCCEEEEcCCCC
Q 039163 88 PQVIITPLDVS-QVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCKISVDAKQKTAWVQSGAT 161 (551)
Q Consensus 88 p~~vv~p~s~~-dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvidl~~l~~i~id~~~~~v~v~~G~~ 161 (551)
=..++.|.+.+ |+++.++-+.+.++++...+ -..-...+.... --+-||++--+.+-.+++.. =.+.|...
T Consensus 84 RVllfs~~~~~~e~~~~a~~L~~~gi~~v~Vs-~~~~~~~~l~~~-~~~~Idl~~~~~LvP~EdG~-Rig~P~~~ 155 (172)
T PF10740_consen 84 RVLLFSPFSTDEEAVALAKQLIEQGIPFVGVS-PNKPDEEDLEDL-ADVHIDLKLPKPLVPTEDGD-RIGFPHLM 155 (172)
T ss_dssp EEEEEES-S--HHHHHHHHHHHHHT--EEEEE--SS---TTGGG--SSS-EE----S-SEE-TTS--EE---HHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEE-ecCCCCCchhhh-hhheeecccCCCcccCCCCC-EecchHHH
Confidence 34677787777 99999999999999999998 111111122221 13668988777777765543 33344433
No 70
>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.
Probab=21.92 E-value=1.7e+02 Score=25.34 Aligned_cols=31 Identities=6% Similarity=0.114 Sum_probs=28.4
Q ss_pred CceEEEecCCHHHHHHHHHHHHhcCCcEEEE
Q 039163 87 KPQVIITPLDVSQVQAAIKCSKKQGLQIRVR 117 (551)
Q Consensus 87 ~p~~vv~p~s~~dv~~~v~~a~~~~~~~~~~ 117 (551)
....|+...+++|+.++-+.|++.+++..++
T Consensus 55 ~~KVVLkv~~e~eL~~L~~~a~~~gi~~~l~ 85 (116)
T cd02429 55 MHKVVLEVPDEAALKNLSSKLTENSIKHKLW 85 (116)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHcCCCeEEE
Confidence 7899999999999999999999999887663
No 71
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=20.77 E-value=1.1e+02 Score=23.94 Aligned_cols=33 Identities=18% Similarity=0.389 Sum_probs=23.3
Q ss_pred EEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEeeCCcc
Q 039163 90 VIITPLDVSQVQAAIKCSKKQGLQIRVRSGGHDFEGLSYVSHVPFVVIDLINLCK 144 (551)
Q Consensus 90 ~vv~p~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvidl~~l~~ 144 (551)
.++.|++-+|+.+++...++.+ .|++|++.|+.
T Consensus 2 ~v~~p~~~~D~~~i~~~l~~g~----------------------~Vivnl~~l~~ 34 (73)
T PF04472_consen 2 VVFEPKSFEDAREIVDALREGK----------------------IVIVNLENLDD 34 (73)
T ss_dssp EEEE-SSGGGHHHHHHHHHTT------------------------EEEE-TTS-H
T ss_pred EEEeeCCHHHHHHHHHHHHcCC----------------------EEEEECCCCCH
Confidence 5789999999999998877522 68899988764
No 72
>PF09875 DUF2102: Uncharacterized protein conserved in archaea (DUF2102); InterPro: IPR012025 The exact functionof this protein unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=20.21 E-value=72 Score=26.87 Aligned_cols=32 Identities=22% Similarity=0.566 Sum_probs=27.1
Q ss_pred ccHHHHHHhHhhcCCCCCCCCCCCCCCCCCCC
Q 039163 514 NNFKRLVHVKTMADPHNFFRNEQSIPPHTSRR 545 (551)
Q Consensus 514 ~n~~RL~~IK~kyDP~nvF~~~qsI~~~~~~~ 545 (551)
+-+.++.+--++.||.++|......||--.||
T Consensus 42 e~V~~~i~~iR~ld~~~IF~KdRGFppgD~RR 73 (104)
T PF09875_consen 42 EEVDKVIEEIRKLDPNHIFVKDRGFPPGDPRR 73 (104)
T ss_pred HHHHHHHHHHHhhCCCceEeecCCCCCCccHH
Confidence 35788888889999999999999999875554
Done!