BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039166
(188 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 103/195 (52%), Gaps = 19/195 (9%)
Query: 1 MMTTTDIVNLEGKPIID-ERLLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGL 59
MMTT D ++ KPI D + A +GAGHV+P+RA DPGLV+D P DY+ LC L
Sbjct: 455 MMTTADPLDNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSL 514
Query: 60 NYTDREIAILVQRKVKCSEISSIKEAQLNYPSF--------SLTLGSGAQTYTRTVTNVG 111
N+T+ + + + S S A LNYPSF + TL Q + RTVTNVG
Sbjct: 515 NFTEEQFKTIA--RSSASHNCSNPSADLNYPSFIALYSIEGNFTLLE--QKFKRTVTNVG 570
Query: 112 QPNSLYKSLIFVPQGVEVEVTPSTLQFNEANQKASFAVTFKRTSYGGNRQDMPFAQGYIK 171
+ + YK+ + P+ + V+P L F N+K S+ +T + G +++ G I
Sbjct: 571 KGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNV----GSIT 626
Query: 172 W--SSDQHSVRIPLV 184
W + HSVR P+V
Sbjct: 627 WVEQNGNHSVRSPIV 641
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 103 bits (257), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 91/174 (52%), Gaps = 11/174 (6%)
Query: 16 IDERLLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLNYTDREIAILVQRKVK 75
++ R P FA G+GHVNP +A PGLV+D DY+ +LCG Y + + +
Sbjct: 451 MNARFNPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSA 510
Query: 76 CSEISSIKEAQLNYPSFSLTLGSGAQT----YTRTVTNVGQPNSLYKSLIFVPQGVEVEV 131
C+ ++ + LNYPSF L++ S +QT + RT+T+V S Y+++I PQG+ + V
Sbjct: 511 CTSGNTGRVWDLNYPSFGLSV-SPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISV 569
Query: 132 TPSTLQFNEANQKASFAVTFKRTSYGGNRQDMPFAQGYIKWSSDQHSVRIPLVV 185
P+ L FN + SF +T + + G + WS H VR P+ +
Sbjct: 570 NPNVLSFNGLGDRKSFTLTVRGSIKGF------VVSASLVWSDGVHYVRSPITI 617
>pdb|2CXI|A Chain A, Crystal Structure Of An N-Terminal Fragment Of The
Phenylalanyl-Trna Synthetase Beta-Subunit From
Pyrococcus Horikoshii
pdb|2CXI|B Chain B, Crystal Structure Of An N-Terminal Fragment Of The
Phenylalanyl-Trna Synthetase Beta-Subunit From
Pyrococcus Horikoshii
pdb|2CXI|C Chain C, Crystal Structure Of An N-Terminal Fragment Of The
Phenylalanyl-Trna Synthetase Beta-Subunit From
Pyrococcus Horikoshii
Length = 348
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 51 DYIPYLCGLNYTDREIAILVQRKVKCSEISSIKEAQLNYPSF 92
DYI L GL D EI L+++ EIS + A+L YP+F
Sbjct: 288 DYIRKLSGLELNDGEIKELLEKXXYEVEISRGR-AKLKYPAF 328
>pdb|1RP0|A Chain A, Crystal Structure Of Thi1 Protein From Arabidopsis
Thaliana
pdb|1RP0|B Chain B, Crystal Structure Of Thi1 Protein From Arabidopsis
Thaliana
Length = 284
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
Query: 9 NLEGKPIIDERLLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLNYTDREIAI 68
N + +D ++ A I GH P A + I D++P + L+ E AI
Sbjct: 166 NHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAI 225
Query: 69 LVQRK-------VKCSEISSIKEAQLNYPSFSLTLGSGAQTYTRTVTNVGQPNSLYKSL 120
+ + V E++ I A P+F + SG + + +G PN++ +L
Sbjct: 226 VRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGLPNAIDGTL 284
>pdb|1VCL|A Chain A, Crystal Structure Of Hemolytic Lectin Cel-iii
pdb|1VCL|B Chain B, Crystal Structure Of Hemolytic Lectin Cel-iii
pdb|2Z48|A Chain A, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
With Galnac
pdb|2Z48|B Chain B, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
With Galnac
pdb|2Z49|A Chain A, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
With Methyl-Alpha-D-Galactopylanoside
pdb|2Z49|B Chain B, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
With Methyl-Alpha-D-Galactopylanoside
Length = 432
Score = 30.0 bits (66), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 11/110 (10%)
Query: 61 YTDREIAILVQRKVKCSEISSIKEAQLNYPSFSLTLGSGAQTYTRTVTNVGQPNSLYKSL 120
+ D E+ V C + + + N SFS T+ +G V +++ K +
Sbjct: 283 FDDWEVPTATWNMVGCDQNGKVSQQISNTISFSSTVTAGVA--------VEVSSTIEKGV 334
Query: 121 IFVPQGVEVEVTPSTLQFNEANQKASFAVTFKRTSYGGNRQDMPFAQGYI 170
IF V V+VT S + +Q + A+T+ +Y D F +G +
Sbjct: 335 IFAKATVSVKVTASLSKAWTNSQSGTTAITYTCDNY---DSDEEFTRGCM 381
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 33 VNPSRANDPGLVFDIQPDDYIPYLCGLNYTDREIAILVQRKVKCSEISSIKEAQLNYPSF 92
+ P+ A +P IQP DY+ +C N TD + +K++ E+ ++ + P
Sbjct: 28 ICPANAENPTFRLTIQPKDYVQIMC--NLTDTTDYQQLPKKLRIGEVDRVQMRRCMLPGH 85
Query: 93 S 93
+
Sbjct: 86 T 86
>pdb|4DCQ|A Chain A, Crystal Structure Of The Fab Fragment Of 3b5h10, An
Antibody-Specific For Extended Polyglutamine Repeats
(Orthorhombic Form)
Length = 218
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 30/94 (31%)
Query: 43 LVFDIQPDDYIPYLCGLNYTDREIAILVQRKVKCSEISSIKEAQLNYPSFSLTLGSGAQT 102
L+ +IQP+D Y+CG+ T +E F G G +
Sbjct: 77 LISNIQPEDEAIYICGVGDTIKE-------------------------QFVYVFGGGTK- 110
Query: 103 YTRTVTNVGQPNSLYKSLIFVPQGVEVEVTPSTL 136
VT +GQP S +F P E++ +TL
Sbjct: 111 ----VTVLGQPKSTPTLTVFPPSSEELKENKATL 140
>pdb|2GVK|A Chain A, Crystal Structure Of A Dye-Decolorizing Peroxidase (Dyp)
From Bacteroides Thetaiotaomicron Vpi-5482 At 1.6 A
Resolution
Length = 317
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 73 KVK--CSEISS-IKEAQLNYPS--FSLTLGSGAQTYTRTVTNVGQPNSL 116
KVK C+ S+ I+ + +P FS T G GA +TR + G+P L
Sbjct: 41 KVKDVCANFSAXIRSXRNRFPDXQFSCTXGFGADAWTRLFPDKGKPKEL 89
>pdb|3ATQ|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius
pdb|3ATR|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius Co- Crystallized With Its Ligand
Length = 453
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 67 AILVQRKVKCSEISSIKEAQLNYPSFSLTLGSGAQTYTRTVTNV 110
++L + K + IKE LNYP +LGS + R V NV
Sbjct: 405 SLLFKLKAVAESMKKIKELYLNYPRSPSSLGS----WRREVDNV 444
>pdb|2QHR|L Chain L, Crystal Structure Of The 13f6-1-2 Fab Fragment Bound To
Its Ebola Virus Glycoprotein Peptide Epitope
Length = 218
Score = 26.6 bits (57), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 30/93 (32%)
Query: 44 VFDIQPDDYIPYLCGLNYTDREIAILVQRKVKCSEISSIKEAQLNYPSFSLTLGSGAQTY 103
+ +IQP+D Y+CG+ T +E + V G G +
Sbjct: 79 ISNIQPEDEAIYICGVGDTIKEQFVYV-------------------------FGGGTK-- 111
Query: 104 TRTVTNVGQPNSLYKSLIFVPQGVEVEVTPSTL 136
VT +GQP S +F P E++ +TL
Sbjct: 112 ---VTVLGQPKSTPTLTVFPPSSEELKENKATL 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,611,972
Number of Sequences: 62578
Number of extensions: 219029
Number of successful extensions: 640
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 631
Number of HSP's gapped (non-prelim): 14
length of query: 188
length of database: 14,973,337
effective HSP length: 93
effective length of query: 95
effective length of database: 9,153,583
effective search space: 869590385
effective search space used: 869590385
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)