Query 039166
Match_columns 188
No_of_seqs 160 out of 895
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 11:30:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039166.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039166hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i6s_A Subtilisin-like proteas 100.0 1.8E-56 6.2E-61 421.6 13.1 179 1-188 455-645 (649)
2 3vta_A Cucumisin; subtilisin-l 100.0 1.2E-51 4.1E-56 386.4 14.2 173 1-187 444-619 (621)
3 1xf1_A C5A peptidase, SCP; hyd 99.8 1.3E-20 4.5E-25 183.3 6.8 144 1-187 444-605 (926)
4 3lxu_X Tripeptidyl-peptidase 2 97.1 0.00024 8.4E-09 71.6 3.1 129 23-186 505-651 (1354)
5 2ys4_A Hydrocephalus-inducing 93.4 0.52 1.8E-05 34.2 8.7 48 100-152 42-89 (122)
6 3qbt_B Inositol polyphosphate 74.6 16 0.00056 27.1 8.0 85 102-187 46-137 (140)
7 2e6j_A Hydin protein; PAPD, st 71.5 9.8 0.00034 26.4 5.8 66 86-152 11-79 (112)
8 3idu_A Uncharacterized protein 67.0 35 0.0012 25.1 8.9 51 98-152 32-83 (127)
9 2r39_A FIXG-related protein; s 58.5 46 0.0016 23.6 7.9 50 101-152 33-82 (118)
10 3lyw_A YBBR family protein; st 55.6 4.9 0.00017 28.3 1.6 32 108-139 50-82 (90)
11 1r6v_A Subtilisin-like serine 50.9 1.1 3.7E-05 42.3 -3.2 28 25-52 423-450 (671)
12 2qsv_A Uncharacterized protein 49.3 66 0.0023 25.2 7.7 63 102-173 22-85 (220)
13 1msp_A MSP, major sperm protei 45.7 73 0.0025 23.0 6.8 47 103-152 29-75 (126)
14 3qis_A Inositol polyphosphate 45.6 87 0.003 26.7 8.3 51 101-152 48-102 (366)
15 1wic_A Hypothetical protein ri 43.5 69 0.0024 24.0 6.6 49 101-152 37-85 (152)
16 2l04_A Major tail protein V; b 41.7 34 0.0012 23.7 4.2 24 128-152 8-31 (91)
17 2x41_A Beta-glucosidase; hydro 41.0 52 0.0018 30.9 6.6 55 99-155 615-679 (721)
18 2kq1_A BH0266 protein; solutio 40.5 9.6 0.00033 27.5 1.2 38 115-152 67-108 (119)
19 1z9l_A Vesicle-associated memb 40.2 65 0.0022 23.1 5.8 50 100-152 28-77 (128)
20 2cql_A OK/SW-CL.103, 60S ribos 38.6 46 0.0016 23.4 4.6 32 118-149 14-45 (100)
21 3afg_A Subtilisin-like serine 37.6 2.3 7.9E-05 38.7 -3.2 19 24-42 401-419 (539)
22 2oxa_A Extracellular serine pr 37.6 13 0.00044 34.0 1.8 24 26-49 410-433 (600)
23 2cri_A Vesicle-associated memb 36.3 87 0.003 23.1 6.1 50 100-152 32-81 (147)
24 2bp3_A Filamin A; structural p 29.8 1E+02 0.0035 20.7 5.2 65 107-187 29-93 (97)
25 1y9z_A Alkaline serine proteas 29.0 8.9 0.00031 33.6 -0.8 23 41-63 416-438 (441)
26 2p26_A Integrin beta-2; hybrid 27.0 44 0.0015 27.9 3.2 24 129-152 74-98 (280)
27 3e9t_A Na/Ca exchange protein; 26.8 1.2E+02 0.0042 21.2 5.3 20 132-152 55-75 (114)
28 2aan_A Auracyanin A; cupredoxi 26.2 38 0.0013 24.4 2.4 38 109-150 11-50 (139)
29 3zyz_A Beta-D-glucoside glucoh 25.2 3.5E+02 0.012 25.3 9.4 50 100-152 614-672 (713)
30 3abz_A Beta-glucosidase I; gly 24.3 1.5E+02 0.0052 28.5 6.8 64 86-152 717-795 (845)
31 1w8o_A Bacterial sialidase; 3D 23.6 3.8E+02 0.013 23.5 11.3 60 89-152 364-424 (601)
32 2k9u_A Gamma filamin; cytoskel 22.2 2.1E+02 0.007 20.0 7.0 57 113-186 47-104 (119)
33 3obl_A Lectin; novel beta barr 21.5 2.2E+02 0.0076 21.0 5.7 46 85-130 28-73 (132)
34 2w0p_A Filamin-A; alternative 20.1 1.3E+02 0.0043 20.2 4.0 56 114-186 33-89 (94)
No 1
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=100.00 E-value=1.8e-56 Score=421.59 Aligned_cols=179 Identities=39% Similarity=0.659 Sum_probs=161.9
Q ss_pred CeeeeeeccCCCCccccCC-CCCCCccccCccccCCCCCCCCCeeecCCccchhhhcccCCCCcceeEEeecccce--ec
Q 039166 1 MMTTTDIVNLEGKPIIDER-LLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLNYTDREIAILVQRKVK--CS 77 (188)
Q Consensus 1 lMTTA~~~d~~~~~i~~~~-~~~atpFd~GAG~vnp~~A~dPGLVyD~~~~DY~~fLC~~gy~~~~i~~it~~~~~--C~ 77 (188)
|||||+.+|+.+++|+++. ..+++||+||+|||||.+|+|||||||++++||++|||++||+.++|+.|++++++ |+
T Consensus 455 LmtTA~~~~~~g~~i~~~~~~~~a~~~~~GaG~vn~~~A~~pGLvyd~~~~dy~~flc~~~y~~~~i~~~~~~~~~~~C~ 534 (649)
T 3i6s_A 455 MMTTADPLDNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASHNCS 534 (649)
T ss_dssp HHHTCBCBCTTSSBCEETTTSSBCCHHHHTTCBCCHHHHTCCSEECCCCHHHHHHHHHTTCCCHHHHHHHHTTTSCC-CC
T ss_pred HhcccccccCCCCcccccccCCcCCcCCCCeeeeCHHHhcCccccccCCchhHHHhhhcCCCCcccceeeecCCCcCCCC
Confidence 7999999999999999874 67999999999999999999999999999999999999999999999999998887 97
Q ss_pred cCCccCccccCccceEEee-cCcc-----EEEEEEEEeecCCCceEEEEEECCCCeEEEEEcCEEEEeeCCeEEEEEEEE
Q 039166 78 EISSIKEAQLNYPSFSLTL-GSGA-----QTYTRTVTNVGQPNSLYKSLIFVPQGVEVEVTPSTLQFNEANQKASFAVTF 151 (188)
Q Consensus 78 ~~~~~~~~dLNyPSi~v~~-~~~~-----~tv~RTVTNVg~~~~tY~a~v~~p~gv~V~V~P~~l~f~~~ge~~sf~Vt~ 151 (188)
. .+.|||||||++++ +.+. ++|+|||||||+.+++|+|+|+.|+|++|+|+|++|+|++.|||++|+|+|
T Consensus 535 ~----~~~~lNyPs~~~~~~~~~~~~~~~~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~ 610 (649)
T 3i6s_A 535 N----PSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTI 610 (649)
T ss_dssp C----CCCCCCCSSEEEEECCSSCCCCEEEEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEE
T ss_pred C----chhhcCCCcEEeecccCCCCccceEEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEE
Confidence 5 46799999999998 6666 899999999999999999999999999999999999999889999999999
Q ss_pred E-eccCCCCCCCCCeEEEEEEEEc--CCceEEeeEEEEeC
Q 039166 152 K-RTSYGGNRQDMPFAQGYIKWSS--DQHSVRIPLVVIFE 188 (188)
Q Consensus 152 ~-~~~~~~~~~~~~~~fG~l~Wsd--~~h~VrsPi~v~~~ 188 (188)
+ .... .+.|.||+|+|+| ++|.|||||+|++.
T Consensus 611 ~~~~~~-----~~~~~fg~l~w~~~~~~h~vrsPi~v~~~ 645 (649)
T 3i6s_A 611 RYIGDE-----GQSRNVGSITWVEQNGNHSVRSPIVTSPI 645 (649)
T ss_dssp EECCC--------CCCEEEEEEEETTSCCEEEEEEEEEEC
T ss_pred EecccC-----CCceEEEEEEEEcCCCCeEEEEeEEEEEc
Confidence 9 4332 4578999999998 99999999999873
No 2
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=100.00 E-value=1.2e-51 Score=386.43 Aligned_cols=173 Identities=34% Similarity=0.605 Sum_probs=132.3
Q ss_pred CeeeeeeccCCCCccccCCCCCCCccccCccccCCCCCCCCCeeecCCccchhhhcccCCCCcceeEEeecccceeccCC
Q 039166 1 MMTTTDIVNLEGKPIIDERLLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLNYTDREIAILVQRKVKCSEIS 80 (188)
Q Consensus 1 lMTTA~~~d~~~~~i~~~~~~~atpFd~GAG~vnp~~A~dPGLVyD~~~~DY~~fLC~~gy~~~~i~~it~~~~~C~~~~ 80 (188)
|||||..+|+.+. +++||+||||||||.+|+|||||||++.+||+.|||++||+..+|+.++++...|+...
T Consensus 444 LmtTA~~~~~~~~--------~~~~~~~GaG~v~~~~A~~pGLvyd~~~~dy~~~lc~~~~~~~~~~~~~~~~~~~~~~~ 515 (621)
T 3vta_A 444 LMTTASPMNARFN--------PQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGN 515 (621)
T ss_dssp HHHTCBCCCTTTC--------TTTHHHHTTCBCCHHHHSCCSEECCCCGGGCC---------------------------
T ss_pred HHhcCCcccccCC--------CCCchhcCCCccCHHHhcCCCeEeecccchhhhhhcccCCCchhheeeeccccccCCCC
Confidence 7999998877654 67899999999999999999999999999999999999999999999999988998765
Q ss_pred ccCccccCccceEEee---cCccEEEEEEEEeecCCCceEEEEEECCCCeEEEEEcCEEEEeeCCeEEEEEEEEEeccCC
Q 039166 81 SIKEAQLNYPSFSLTL---GSGAQTYTRTVTNVGQPNSLYKSLIFVPQGVEVEVTPSTLQFNEANQKASFAVTFKRTSYG 157 (188)
Q Consensus 81 ~~~~~dLNyPSi~v~~---~~~~~tv~RTVTNVg~~~~tY~a~v~~p~gv~V~V~P~~l~f~~~ge~~sf~Vt~~~~~~~ 157 (188)
.....|||||||++.. +..+++|+|||||||+..++|+++|+.|+|++|+|+|++|+|++.|||++|+|+|+...
T Consensus 516 ~~~~~~lN~pS~~v~~~~~~~~~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~~~-- 593 (621)
T 3vta_A 516 TGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGSI-- 593 (621)
T ss_dssp --CGGGSCCSSEEEECCSSCCEEEEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEECC--
T ss_pred cCcccccccccEEEEccCCCceEEEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEecC--
Confidence 5677899999999964 45688999999999999999999999999999999999999999999999999998322
Q ss_pred CCCCCCCeEEEEEEEEcCCceEEeeEEEEe
Q 039166 158 GNRQDMPFAQGYIKWSSDQHSVRIPLVVIF 187 (188)
Q Consensus 158 ~~~~~~~~~fG~l~Wsd~~h~VrsPi~v~~ 187 (188)
.+.|.||+|+|+|++|.|||||+|+.
T Consensus 594 ----~~~~~~g~l~w~d~~h~Vr~Pi~v~~ 619 (621)
T 3vta_A 594 ----KGFVVSASLVWSDGVHYVRSPITITS 619 (621)
T ss_dssp ----CSSEEEEEEEEECSSCCCEEEEEEEC
T ss_pred ----CCceEEEEEEEEcCCEEEEeCEEEEE
Confidence 45799999999999999999999985
No 3
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*
Probab=99.81 E-value=1.3e-20 Score=183.29 Aligned_cols=144 Identities=17% Similarity=0.235 Sum_probs=108.3
Q ss_pred CeeeeeeccCCCCccccCCCCCCCccccCccccCCCCCCCCCeeecCCccchhhhcccCCCCcceeEEeecccceeccCC
Q 039166 1 MMTTTDIVNLEGKPIIDERLLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLNYTDREIAILVQRKVKCSEIS 80 (188)
Q Consensus 1 lMTTA~~~d~~~~~i~~~~~~~atpFd~GAG~vnp~~A~dPGLVyD~~~~DY~~fLC~~gy~~~~i~~it~~~~~C~~~~ 80 (188)
||+||..+++.+ ....++||++|+|||||.+|++|++ |||+.+|+..+|
T Consensus 444 L~~TA~~~~~~~------~~~~~~~~~~G~G~vn~~~A~~~~~-----------~l~~~~~~~~~i-------------- 492 (926)
T 1xf1_A 444 LMSSATALYDED------EKAYFSPRQQGAGAVDAKKASAATM-----------YVTDKDNTSSKV-------------- 492 (926)
T ss_dssp HHHHSBCCEEGG------GTEECCHHHHTTCBCCHHHHHHCSE-----------EEEESSSSCSCE--------------
T ss_pred HHhcCCCcccCC------CCccCChhccCCCccCHHHhcCCCe-----------EEEcCCCCccee--------------
Confidence 699999776532 1235679999999999999999965 789877654322
Q ss_pred ccCccccCccceEEeecCccEEEEEEEEeecCC--CceEEEEEEC--CCCeEEEEEcCEEEEeeC-------CeEEEEEE
Q 039166 81 SIKEAQLNYPSFSLTLGSGAQTYTRTVTNVGQP--NSLYKSLIFV--PQGVEVEVTPSTLQFNEA-------NQKASFAV 149 (188)
Q Consensus 81 ~~~~~dLNyPSi~v~~~~~~~tv~RTVTNVg~~--~~tY~a~v~~--p~gv~V~V~P~~l~f~~~-------ge~~sf~V 149 (188)
.+..+....+++|||||+|+. ..+|++++.. |.+..++|+|..|.|... ||+++|+|
T Consensus 493 ------------~l~~~~~~~~~~~tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~p~~l~~~~~~~vtv~ag~~~~~~v 560 (926)
T 1xf1_A 493 ------------HLNNVSDKFEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLYETSWQKITIPANSSKQVTV 560 (926)
T ss_dssp ------------EEEEECSEEEEEEEEEECSSSCEEEEEEEEEEEEEEETTEEEEEEEEEEECCCEEEEECTTEEEEEEE
T ss_pred ------------eccccCccEEEEEEEEEeCCCceeEEEEEEEEeccCCCceEEeccceeEeccCCeEEECCCCEEEEEE
Confidence 223334568899999999974 4688888865 789999999999988876 99999999
Q ss_pred EEE-eccCCC---CCCCCCeEEEEEEEE--cCCce-EEeeEEEEe
Q 039166 150 TFK-RTSYGG---NRQDMPFAQGYIKWS--SDQHS-VRIPLVVIF 187 (188)
Q Consensus 150 t~~-~~~~~~---~~~~~~~~fG~l~Ws--d~~h~-VrsPi~v~~ 187 (188)
+|+ ...... .++.+.+.||+|+|+ ++.|. ||+|+++..
T Consensus 561 t~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~v~~P~~~~~ 605 (926)
T 1xf1_A 561 PIDASRFSKDLLAQMKNGYFLEGFVRFKQDPTKEELMSIPYIGFR 605 (926)
T ss_dssp EEECHHHHHHHHHHSTTCEEEEEEEEEESSTTSCCCEEEEEEEEE
T ss_pred EEEcCccchhhcccccCCcEEEEEEEEEeCCCCCCEEEeeeEEEe
Confidence 999 411000 001446899999999 66665 999999863
No 4
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=97.05 E-value=0.00024 Score=71.60 Aligned_cols=129 Identities=16% Similarity=0.184 Sum_probs=82.3
Q ss_pred CCccccCccccCCCCCCCCCeeecCCccchhhhcccCCCCc-ceeEEeecccceeccCCccCccccCccceEEeecCccE
Q 039166 23 ADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLNYTD-REIAILVQRKVKCSEISSIKEAQLNYPSFSLTLGSGAQ 101 (188)
Q Consensus 23 atpFd~GAG~vnp~~A~dPGLVyD~~~~DY~~fLC~~gy~~-~~i~~it~~~~~C~~~~~~~~~dLNyPSi~v~~~~~~~ 101 (188)
..++.+|.|.||+.+|++..+.|+..++||+.|+|..++.. ..|- .+.. .| ....
T Consensus 505 ~~~~~~G~GlLDa~~AV~~a~~~~~~p~~~v~f~~~v~~~~~rgIy--lR~~-~~---------------------~~~~ 560 (1354)
T 3lxu_X 505 VDPFAQGHGLLNVEKAFEHLTEHRQSKDNMLRFSVRVGNNADKGIH--LRQG-VQ---------------------RNSI 560 (1354)
T ss_dssp SCTTTSSSSBCCHHHHHHHHHTTTTCGGGGEEEEEEETTTTBSSEE--ECSS-CC---------------------CSCE
T ss_pred CCcccccCCEeCHHHHHHHHHhcCCCCccceEEEEEecCCCCCceE--Eecc-cc---------------------CCce
Confidence 45689999999999999999999999999999999988632 2221 1110 01 1122
Q ss_pred EEEEEEEeec------CC--CceE--EEEEE-CCCCeEEEEEcCEEEEeeCCeEEEEEEEEE-eccCCCCCCCCCeEEEE
Q 039166 102 TYTRTVTNVG------QP--NSLY--KSLIF-VPQGVEVEVTPSTLQFNEANQKASFAVTFK-RTSYGGNRQDMPFAQGY 169 (188)
Q Consensus 102 tv~RTVTNVg------~~--~~tY--~a~v~-~p~gv~V~V~P~~l~f~~~ge~~sf~Vt~~-~~~~~~~~~~~~~~fG~ 169 (188)
.|+-+|+-+= +. ...+ ++.+. ..+-+. -|+.|.+ .++.++|.|.+. +.. .....+++
T Consensus 561 ~~tv~V~p~f~~~~~~~~~~~i~f~~~l~L~~t~~wv~---~p~~l~l--~~~~r~~~v~vDp~~L------~~G~h~~~ 629 (1354)
T 3lxu_X 561 DYNVYIEPIFYNDKEADPKDKFNFNVRLNLIASQPWVQ---CGAFLDL--SYGTRSIAVRVDPTGL------QPGVHSAV 629 (1354)
T ss_dssp EEEEEEEEEESSCSCSSSTTCSCCCCEEEEEESSTTEE---ECSCEEC--TTSCEEEEEEECGGGC------CSEEEEEE
T ss_pred EEEEEEeeeecCcccCChhhccceEEEEEEecCCCcee---cccceee--cCCCceEEEEECCCCC------CCcceeEE
Confidence 3333332221 11 1111 22222 222333 3888877 378889999999 655 33678999
Q ss_pred EEEEc-----CCceEEeeEEEE
Q 039166 170 IKWSS-----DQHSVRIPLVVI 186 (188)
Q Consensus 170 l~Wsd-----~~h~VrsPi~v~ 186 (188)
|..-| .+...|.||.|.
T Consensus 630 v~~~D~~~~~~gp~f~ipvTv~ 651 (1354)
T 3lxu_X 630 IRAYDTDCVQKGSLFEIPVTVV 651 (1354)
T ss_dssp EEEEESSCTTSCCSEEEEEEEE
T ss_pred EEEEEcCCcccCceEEeeEEEE
Confidence 98764 358999999875
No 5
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.43 E-value=0.52 Score=34.25 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=39.5
Q ss_pred cEEEEEEEEeecCCCceEEEEEECCCCeEEEEEcCEEEEeeCCeEEEEEEEEE
Q 039166 100 AQTYTRTVTNVGQPNSLYKSLIFVPQGVEVEVTPSTLQFNEANQKASFAVTFK 152 (188)
Q Consensus 100 ~~tv~RTVTNVg~~~~tY~a~v~~p~gv~V~V~P~~l~f~~~ge~~sf~Vt~~ 152 (188)
..+.+=.++|+|..+..|+..... -+ +|+|+...+.+ ||++.++|+|.
T Consensus 42 ~~~~~~~l~N~g~~~~~f~~~~~~--~F--~i~P~~g~L~p-g~~~~i~V~F~ 89 (122)
T 2ys4_A 42 STQKILLVRNIGNKNAVFHIKTCR--PF--SIEPAIGTLNV-GESMQLEVEFE 89 (122)
T ss_dssp CEEEEEEEECCSSSCEEEEEECCT--TE--EEESSEEEECT-TCEEEEEEEEC
T ss_pred eEEEEEEEEECCCCCEEEEEecCC--Ce--EEECCcCEECC-CCEEEEEEEEE
Confidence 556677789999988888876643 34 46899999987 99999999998
No 6
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=74.56 E-value=16 Score=27.09 Aligned_cols=85 Identities=6% Similarity=-0.036 Sum_probs=53.0
Q ss_pred EEEEEEEeecCCCceEEEEEECC----CCeEEEEEcCEEEEeeCCeEEEEEEEEE-eccCCCCCCCC-CeEEEEEEEE-c
Q 039166 102 TYTRTVTNVGQPNSLYKSLIFVP----QGVEVEVTPSTLQFNEANQKASFAVTFK-RTSYGGNRQDM-PFAQGYIKWS-S 174 (188)
Q Consensus 102 tv~RTVTNVg~~~~tY~a~v~~p----~gv~V~V~P~~l~f~~~ge~~sf~Vt~~-~~~~~~~~~~~-~~~fG~l~Ws-d 174 (188)
+-+=+++|.|.-+..|+...... ..--.+|+|..=.+.+ ||+..+.|++. ....-.+...+ .-...-|+.. .
T Consensus 46 ~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~P-ge~~~I~v~~~v~~~~~~~ln~g~~~l~diLvL~Ve 124 (140)
T 3qbt_B 46 KEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEP-NETVDISLDVYVSKDSVTILNSGEDKIEDILVLHLD 124 (140)
T ss_dssp EEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECT-TCEEEEEEEECBCHHHHHHHHHSSSCSCEEEEEEET
T ss_pred eeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCC-CCeeEEEEEEEEccCcccccccchhhhheeEEEEee
Confidence 34446799999999999974310 1112556899999988 99999999997 32100000011 2223456666 5
Q ss_pred CCceEEeeEEEEe
Q 039166 175 DQHSVRIPLVVIF 187 (188)
Q Consensus 175 ~~h~VrsPi~v~~ 187 (188)
++..-..||-..|
T Consensus 125 ~G~d~fI~v~g~~ 137 (140)
T 3qbt_B 125 RGKDYFLTISGNY 137 (140)
T ss_dssp TSCEEEEEEEEEE
T ss_pred cCCcEEEEEeccc
Confidence 6677788887655
No 7
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.48 E-value=9.8 Score=26.35 Aligned_cols=66 Identities=14% Similarity=0.232 Sum_probs=44.3
Q ss_pred ccCccceEEeec--CccEEEEEEEEeecCCCceEEEEEEC-CCCeEEEEEcCEEEEeeCCeEEEEEEEEE
Q 039166 86 QLNYPSFSLTLG--SGAQTYTRTVTNVGQPNSLYKSLIFV-PQGVEVEVTPSTLQFNEANQKASFAVTFK 152 (188)
Q Consensus 86 dLNyPSi~v~~~--~~~~tv~RTVTNVg~~~~tY~a~v~~-p~gv~V~V~P~~l~f~~~ge~~sf~Vt~~ 152 (188)
.|+..++-.... ....+.+=+++|.|..+..|+..... +.+-..+++|..=.+.+ |+++.++|+|.
T Consensus 11 ~~~~~~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~p-g~~~~i~V~f~ 79 (112)
T 2e6j_A 11 HFNFELLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEP-SGVQAIQISFS 79 (112)
T ss_dssp EESCSEEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECT-TBCCEEEEEEC
T ss_pred EECcccEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECC-CCEEEEEEEEE
Confidence 344444444332 22445555689999999999883211 11233667999999988 99999999998
No 8
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=67.02 E-value=35 Score=25.08 Aligned_cols=51 Identities=14% Similarity=0.253 Sum_probs=35.4
Q ss_pred CccEEEEEEEEeecCCC-ceEEEEEECCCCeEEEEEcCEEEEeeCCeEEEEEEEEE
Q 039166 98 SGAQTYTRTVTNVGQPN-SLYKSLIFVPQGVEVEVTPSTLQFNEANQKASFAVTFK 152 (188)
Q Consensus 98 ~~~~tv~RTVTNVg~~~-~tY~a~v~~p~gv~V~V~P~~l~f~~~ge~~sf~Vt~~ 152 (188)
....+++=+|+|.|..+ +.|++.+.. .|-.+.-. ...+.+ |+++++++++.
T Consensus 32 G~~~ti~vtV~N~G~~~a~~~~V~lyv-ng~~v~t~--~v~La~-G~s~tv~f~~~ 83 (127)
T 3idu_A 32 NKLAEYEVHVKNLGGIGVPSTKVRVYI-NGTLYKNW--TVSLGP-KEEKVLTFNWT 83 (127)
T ss_dssp TCCEEEEEEEEECSSSCEEEEEEEEEE-TTEEEEEE--EEEECT-TCEEEEEEEEC
T ss_pred CCEEEEEEEEEECCCCccCCcEEEEEE-CCEEEeeE--EeccCC-CCeEEEEEEEE
Confidence 44789999999999855 678887654 45555433 235655 88888777665
No 9
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=58.53 E-value=46 Score=23.59 Aligned_cols=50 Identities=20% Similarity=0.149 Sum_probs=41.2
Q ss_pred EEEEEEEEeecCCCceEEEEEECCCCeEEEEEcCEEEEeeCCeEEEEEEEEE
Q 039166 101 QTYTRTVTNVGQPNSLYKSLIFVPQGVEVEVTPSTLQFNEANQKASFAVTFK 152 (188)
Q Consensus 101 ~tv~RTVTNVg~~~~tY~a~v~~p~gv~V~V~P~~l~f~~~ge~~sf~Vt~~ 152 (188)
..++=.+.|-...+.+|+.+++..+|+++. .|..+...+ ||..++.|.+.
T Consensus 33 N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~-g~~~i~v~~-g~~~~~~v~v~ 82 (118)
T 2r39_A 33 NTYTLKVINKTQQVQEYNLDVKGLNDVSWY-GKQTIQVEP-GEVLNLPMSLG 82 (118)
T ss_dssp EEEEEEEEECSSSCEEEEEEEESCSSCEEE-SCCEEEECT-TCEEEEEEEEE
T ss_pred EEEEEEEEECCCCCEEEEEEEeCCcccEEe-CCCcEEECC-CCEEEEEEEEE
Confidence 456777899998899999999988887653 466788877 99999999988
No 10
>3lyw_A YBBR family protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.90A {Desulfitobacterium hafniense} PDB: 2kpu_A 2l5n_A
Probab=55.56 E-value=4.9 Score=28.33 Aligned_cols=32 Identities=13% Similarity=0.208 Sum_probs=23.9
Q ss_pred EeecCCCceEEEEEECCCCe-EEEEEcCEEEEe
Q 039166 108 TNVGQPNSLYKSLIFVPQGV-EVEVTPSTLQFN 139 (188)
Q Consensus 108 TNVg~~~~tY~a~v~~p~gv-~V~V~P~~l~f~ 139 (188)
+++.++.-+|.+++..|.|+ -++|+|+.+++.
T Consensus 50 sg~~~G~~~~~V~v~~P~G~~lv~vsP~~V~~~ 82 (90)
T 3lyw_A 50 SGSEPGEHDYEVKVEPIPNIKIVEISPRVVTLQ 82 (90)
T ss_dssp TTCCSEEEEEECEECCCTTEEEEEEESSEEEEE
T ss_pred cCCCCCcEeEEEEEECCCCCEEEEEccceEEEE
Confidence 34444456788889999997 568999998874
No 11
>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1
Probab=50.93 E-value=1.1 Score=42.29 Aligned_cols=28 Identities=18% Similarity=0.089 Sum_probs=24.6
Q ss_pred ccccCccccCCCCCCCCCeeecCCccch
Q 039166 25 IFAIGAGHVNPSRANDPGLVFDIQPDDY 52 (188)
Q Consensus 25 pFd~GAG~vnp~~A~dPGLVyD~~~~DY 52 (188)
...+|.|+||+.+|++..|.++.+..||
T Consensus 423 d~~~G~G~vna~~Al~~~l~~~~~~~~~ 450 (671)
T 1r6v_A 423 DHDTGYGLVKLDAALQGPLPTQGGVEEF 450 (671)
T ss_dssp BTTTBTCBCCHHHHHHCCCCSSSEEEEE
T ss_pred CCCcccceeCHHHHhhhhcCCCCCccce
Confidence 4689999999999999999998877666
No 12
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=49.30 E-value=66 Score=25.18 Aligned_cols=63 Identities=8% Similarity=0.077 Sum_probs=40.2
Q ss_pred EEEEEEEeecCCCceEEEEEECCCCeEEEEEcCEEEEeeCCeEEEEEEEEE-eccCCCCCCCCCeEEEEEEEE
Q 039166 102 TYTRTVTNVGQPNSLYKSLIFVPQGVEVEVTPSTLQFNEANQKASFAVTFK-RTSYGGNRQDMPFAQGYIKWS 173 (188)
Q Consensus 102 tv~RTVTNVg~~~~tY~a~v~~p~gv~V~V~P~~l~f~~~ge~~sf~Vt~~-~~~~~~~~~~~~~~fG~l~Ws 173 (188)
+.+=+++|.|+.+-+++.. ..|..+.+.++|..| .+ ||+..++|++. .... ......++|...
T Consensus 22 ~~~~~i~N~g~~pl~i~~~-~~p~~~~~~~~~~~I--~P-G~~g~I~vt~~~~~~~-----~~G~~~~~i~v~ 85 (220)
T 2qsv_A 22 VVRLVVNNTDESDLQVAVV-SLPSFVSLDDRAFRL--QA-REPRELNLSLAVPRNM-----PPGMKDEPLVLE 85 (220)
T ss_dssp EEEEEEEECSSSCEEEEEE-ECCTTEECSCCEEEE--CS-SSCEEEEEEECCCTTC-----CSEEEEEEEEEE
T ss_pred eEEEEEEeCCCCceEEEec-cCCCceEeeeCccee--CC-CCceEEEEEEcchhcc-----cCCceeeEEEEE
Confidence 3444589999877777653 347777765555555 55 99999999998 4331 223344666654
No 13
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=45.69 E-value=73 Score=23.01 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=38.4
Q ss_pred EEEEEEeecCCCceEEEEEECCCCeEEEEEcCEEEEeeCCeEEEEEEEEE
Q 039166 103 YTRTVTNVGQPNSLYKSLIFVPQGVEVEVTPSTLQFNEANQKASFAVTFK 152 (188)
Q Consensus 103 v~RTVTNVg~~~~tY~a~v~~p~gv~V~V~P~~l~f~~~ge~~sf~Vt~~ 152 (188)
-.=+++|.++..-.|+++..+|.-+. |.|..=.+.+ ||+..+.|++.
T Consensus 29 ~~l~l~N~s~~~vaFKVKTT~p~~y~--VrP~~Gii~P-~~s~~v~V~~q 75 (126)
T 1msp_A 29 YHIKITNAGGRRIGWAIKTTNMRRLS--VDPPCGVLDP-KEKVLMAVSCD 75 (126)
T ss_dssp EEEEEEECSSSCEEEEEEESCTTTEE--EESCEEEECT-TCEEEEEEEEC
T ss_pred EEEEEECCCCCeEEEEEEcCCCCcEE--EECCCeEECC-CCEEEEEEEec
Confidence 34568999888889999999998764 6898888877 99998888887
No 14
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=45.59 E-value=87 Score=26.73 Aligned_cols=51 Identities=12% Similarity=0.109 Sum_probs=37.8
Q ss_pred EEEEEEEEeecCCCceEEEEEECCCCe-E---EEEEcCEEEEeeCCeEEEEEEEEE
Q 039166 101 QTYTRTVTNVGQPNSLYKSLIFVPQGV-E---VEVTPSTLQFNEANQKASFAVTFK 152 (188)
Q Consensus 101 ~tv~RTVTNVg~~~~tY~a~v~~p~gv-~---V~V~P~~l~f~~~ge~~sf~Vt~~ 152 (188)
.+-+=|++|.|.-+..|+..-...... . ++|+|..-.+.+ ||+....|++.
T Consensus 48 ~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~P-ge~~~i~l~~~ 102 (366)
T 3qis_A 48 QKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEP-NETVDISLDVY 102 (366)
T ss_dssp EEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECT-TCEEEEEEEEC
T ss_pred EEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECC-CCEEEEEEEEE
Confidence 344446799999999999854322211 1 667899999977 99999999997
No 15
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=43.54 E-value=69 Score=24.01 Aligned_cols=49 Identities=18% Similarity=0.183 Sum_probs=39.8
Q ss_pred EEEEEEEEeecCCCceEEEEEECCCCeEEEEEcCEEEEeeCCeEEEEEEEEE
Q 039166 101 QTYTRTVTNVGQPNSLYKSLIFVPQGVEVEVTPSTLQFNEANQKASFAVTFK 152 (188)
Q Consensus 101 ~tv~RTVTNVg~~~~tY~a~v~~p~gv~V~V~P~~l~f~~~ge~~sf~Vt~~ 152 (188)
++-.=+++|..+..-.|++...+|.-+. |.|..=.+.+ |++..++|++.
T Consensus 37 ~~~~l~L~N~s~~~VaFKVKTT~p~~y~--VrP~~GiI~P-~~s~~V~V~lq 85 (152)
T 1wic_A 37 KKTLIVLTNVTKNIVAFKVRTTAPEKYR--VKPSNSSCDP-GASIDIIVSPH 85 (152)
T ss_dssp CCEEEEEEBCSSSCEEEEEEESCTTTEE--EESSEEEECT-TCEEEEEEEEC
T ss_pred EEEEEEEEcCCCCeEEEEEECCCCCcee--ecCCCcEECC-CCeEEEEEEec
Confidence 3445678999888888999999997665 6898888877 99999999987
No 16
>2l04_A Major tail protein V; bacteriophage lambda, phage tail, GPV, IG-like domain, viral; NMR {Enterobacteria phage lambda}
Probab=41.69 E-value=34 Score=23.71 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=20.1
Q ss_pred EEEEEcCEEEEeeCCeEEEEEEEEE
Q 039166 128 EVEVTPSTLQFNEANQKASFAVTFK 152 (188)
Q Consensus 128 ~V~V~P~~l~f~~~ge~~sf~Vt~~ 152 (188)
.|++.|..+++.. |++..++.++.
T Consensus 8 ~i~l~~~~~~l~v-G~t~~L~atv~ 31 (91)
T 2l04_A 8 GMTVTPASTSVVK-GQSTTLTVAFQ 31 (91)
T ss_dssp CEEEECCCEEEET-TCEEEEEEEEC
T ss_pred EEEEeCCceEEEc-CCEEEEEEEEe
Confidence 4667899999976 99999888887
No 17
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A*
Probab=40.95 E-value=52 Score=30.92 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=34.4
Q ss_pred ccEEEEEEEEeecCCCceEEE--EEECCCCeEEEEEcC-EEE-Eee-----CCeEEEEEEEEE-ecc
Q 039166 99 GAQTYTRTVTNVGQPNSLYKS--LIFVPQGVEVEVTPS-TLQ-FNE-----ANQKASFAVTFK-RTS 155 (188)
Q Consensus 99 ~~~tv~RTVTNVg~~~~tY~a--~v~~p~gv~V~V~P~-~l~-f~~-----~ge~~sf~Vt~~-~~~ 155 (188)
...+++=+|||+|+..+.-.| -+..|.+ ++ ..|. .|. |++ .||+++.++++. ...
T Consensus 615 ~~~~v~v~VtNtG~~~G~eVvQlYv~~~~~-~~-~~P~k~L~gF~kv~~L~pGes~~V~~~l~~~~l 679 (721)
T 2x41_A 615 ETLRVQYRIENTGGRAGKEVSQVYIKAPKG-KI-DKPFQELKAFHKTRLLNPGESEEVVLEIPVRDL 679 (721)
T ss_dssp SEEEEEEEEEECSSSCBCCEEEEEEECCCS-SS-CCCSCEEEEEEECCCBCTTCEEEEEEEEEGGGG
T ss_pred CeEEEEEEEEECCCCCCcEEeeEEEccCCC-CC-CCchHHhhcccccccCCCCCeEEEEEEECHHHh
Confidence 457899999999986655444 4555543 11 1332 222 332 399999999998 443
No 18
>2kq1_A BH0266 protein; solution NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Bacillus halodurans}
Probab=40.48 E-value=9.6 Score=27.46 Aligned_cols=38 Identities=21% Similarity=0.180 Sum_probs=25.7
Q ss_pred ceEEE--EEE-CCCCeEEEEEcCEEEEee-CCeEEEEEEEEE
Q 039166 115 SLYKS--LIF-VPQGVEVEVTPSTLQFNE-ANQKASFAVTFK 152 (188)
Q Consensus 115 ~tY~a--~v~-~p~gv~V~V~P~~l~f~~-~ge~~sf~Vt~~ 152 (188)
++|++ .++ .|.|++++++|+.+++.- .-++++|.|++.
T Consensus 67 G~~~vpv~v~~lp~~v~v~v~P~~V~V~i~~~~~k~~pV~v~ 108 (119)
T 2kq1_A 67 GSHTVDVEHRGFPGDLAVTVEPRMARVQLEERQTVSVPVTVE 108 (119)
T ss_dssp EEEEEECEEESSCTTSEEEESCCEEEEEEESCCCCCCCCCCC
T ss_pred CeEEEEEEEecCCCCeEEEEcCCEEEEEEEEEEEEEEEEEEE
Confidence 44444 445 688999999999887653 245566766665
No 19
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=40.24 E-value=65 Score=23.10 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=40.1
Q ss_pred cEEEEEEEEeecCCCceEEEEEECCCCeEEEEEcCEEEEeeCCeEEEEEEEEE
Q 039166 100 AQTYTRTVTNVGQPNSLYKSLIFVPQGVEVEVTPSTLQFNEANQKASFAVTFK 152 (188)
Q Consensus 100 ~~tv~RTVTNVg~~~~tY~a~v~~p~gv~V~V~P~~l~f~~~ge~~sf~Vt~~ 152 (188)
.++-.=+++|..+..-.|++...+|.-+. |.|..=...+ |++..+.|++.
T Consensus 28 ~~~~~l~L~N~s~~~vaFKVKTT~p~~y~--VrP~~G~i~P-~~s~~v~V~~~ 77 (128)
T 1z9l_A 28 VVTTNLKLQNPSDRKVCFKVKTTAPRRYC--VRPNSGVIDP-GSIVTVSVMLQ 77 (128)
T ss_dssp CEEEEEEEECCSSSCEEEEEEESCGGGEE--EESCEEEECT-TCEEEEEEEEC
T ss_pred eEEEEEEEECCCCCeEEEEEECCCCCceE--EeCCCcEECC-CCeEEEEEEEC
Confidence 45556678999888889999998887655 6888877766 99999888887
No 20
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1
Probab=38.64 E-value=46 Score=23.45 Aligned_cols=32 Identities=9% Similarity=0.186 Sum_probs=24.0
Q ss_pred EEEEECCCCeEEEEEcCEEEEeeCCeEEEEEE
Q 039166 118 KSLIFVPQGVEVEVTPSTLQFNEANQKASFAV 149 (188)
Q Consensus 118 ~a~v~~p~gv~V~V~P~~l~f~~~ge~~sf~V 149 (188)
+..+.-|+||+|++.-..++++....++++.+
T Consensus 14 k~pI~IP~gV~V~i~~~~VtVKGPkG~L~~~~ 45 (100)
T 2cql_A 14 NQTVDIPENVDITLKGRTVIVKGPRGTLRRDF 45 (100)
T ss_dssp CEEECCCSSCEEEEETTEEEEEETTEEEEEEC
T ss_pred cCcEEcCCCCEEEEeCCEEEEECCCceEEEEe
Confidence 34577899999999999999987555544433
No 21
>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis}
Probab=37.63 E-value=2.3 Score=38.73 Aligned_cols=19 Identities=37% Similarity=0.342 Sum_probs=16.2
Q ss_pred CccccCccccCCCCCCCCC
Q 039166 24 DIFAIGAGHVNPSRANDPG 42 (188)
Q Consensus 24 tpFd~GAG~vnp~~A~dPG 42 (188)
..+.+|+|+||+.+|++..
T Consensus 401 ~~~~~G~G~vn~~~Al~~~ 419 (539)
T 3afg_A 401 ADIAYGAGRVNAYKAAYYD 419 (539)
T ss_dssp SBTTTBTCBCCHHHHHTGG
T ss_pred CccCccCCccCHHHHhhhc
Confidence 3588999999999998854
No 22
>2oxa_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} PDB: 3hjr_A
Probab=37.57 E-value=13 Score=33.96 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=17.8
Q ss_pred cccCccccCCCCCCCCCeeecCCc
Q 039166 26 FAIGAGHVNPSRANDPGLVFDIQP 49 (188)
Q Consensus 26 Fd~GAG~vnp~~A~dPGLVyD~~~ 49 (188)
+.||.|+||+.+|++--.-+..-+
T Consensus 410 ~~~G~G~vda~~Av~~A~~~~~~~ 433 (600)
T 2oxa_A 410 PTYGFGLIDVNKALELAANHQPLP 433 (600)
T ss_dssp TTTBTCBCCHHHHHHHHTTCCCCC
T ss_pred ccCCCchhhHHHHHHHHHhcccCC
Confidence 778999999999886555444433
No 23
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=36.32 E-value=87 Score=23.14 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=39.7
Q ss_pred cEEEEEEEEeecCCCceEEEEEECCCCeEEEEEcCEEEEeeCCeEEEEEEEEE
Q 039166 100 AQTYTRTVTNVGQPNSLYKSLIFVPQGVEVEVTPSTLQFNEANQKASFAVTFK 152 (188)
Q Consensus 100 ~~tv~RTVTNVg~~~~tY~a~v~~p~gv~V~V~P~~l~f~~~ge~~sf~Vt~~ 152 (188)
.++-.=+++|..+..-.|++...+|.-+. |.|..=.+.+ |++..+.|++.
T Consensus 32 ~~~~~l~L~N~s~~~VaFKVKTT~p~~y~--VrP~~GiI~P-~~s~~v~V~l~ 81 (147)
T 2cri_A 32 VVTTNLKLQNPSDRKVCFKVKTTAPRRYC--VRPNSGIIDP-GSIVTVSVMLQ 81 (147)
T ss_dssp CCCEEEEEECCSSSCEEEEEEESCTTSEE--EESSEEECCT-TCEEEEEEEEC
T ss_pred eEEEEEEEECCCCCcEEEEEECCCCccEE--EcCCCcEECC-CCeEEEEEEEC
Confidence 34445678999888888999999998765 5888877766 99999888887
No 24
>2bp3_A Filamin A; structural protein, cytoskeleton/complex, actin binding protein, cytoskeleton, complex; 2.32A {Homo sapiens} SCOP: b.1.18.10 PDB: 2aav_A
Probab=29.78 E-value=1e+02 Score=20.71 Aligned_cols=65 Identities=18% Similarity=0.233 Sum_probs=36.3
Q ss_pred EEeecCCCceEEEEEECCCCeEEEEEcCEEEEeeCCeEEEEEEEEEeccCCCCCCCCCeEEEEEEEEcCCceEEeeEEEE
Q 039166 107 VTNVGQPNSLYKSLIFVPQGVEVEVTPSTLQFNEANQKASFAVTFKRTSYGGNRQDMPFAQGYIKWSSDQHSVRIPLVVI 186 (188)
Q Consensus 107 VTNVg~~~~tY~a~v~~p~gv~V~V~P~~l~f~~~ge~~sf~Vt~~~~~~~~~~~~~~~~fG~l~Wsd~~h~VrsPi~v~ 186 (188)
|.-.+......++.+..|.++.+.+. . ..--+|.|++.... .+.+ .=++.| ++.|.--||..+.
T Consensus 29 v~t~dag~~~l~v~v~~p~~~~~~v~-------d-~~dGty~v~Y~p~~------~G~y-~i~V~~-~g~~I~gSPF~v~ 92 (97)
T 2bp3_A 29 VNTKDAGEGGLSLAIEGPSKAEISCT-------D-NQDGTCSVSYLPVL------PGDY-SILVKY-NEQHVPGSPFTAR 92 (97)
T ss_dssp EECTTCCSEEEEEEEEESSCCEEEEE-------E-CSSSEEEEEEECSS------CEEE-EEEEEE-TTEECTTCSEEEE
T ss_pred EEECCCCCCcEEEEEECCCCCEEEEE-------E-CCCCEEEEEEEeCC------CCcE-EEEEEE-CCEECCCcCEEEE
Confidence 33333345667788888887666432 2 22247888887211 1122 223444 5677777888765
Q ss_pred e
Q 039166 187 F 187 (188)
Q Consensus 187 ~ 187 (188)
.
T Consensus 93 v 93 (97)
T 2bp3_A 93 V 93 (97)
T ss_dssp E
T ss_pred E
Confidence 3
No 25
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*
Probab=29.01 E-value=8.9 Score=33.56 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=16.5
Q ss_pred CCeeecCCccchhhhcccCCCCc
Q 039166 41 PGLVFDIQPDDYIPYLCGLNYTD 63 (188)
Q Consensus 41 PGLVyD~~~~DY~~fLC~~gy~~ 63 (188)
-|||--....||+.|||+++++.
T Consensus 416 ~G~vn~~~A~~~~~~lc~~~~~~ 438 (441)
T 1y9z_A 416 YGMINAVAAKAYLDESCTGPTDP 438 (441)
T ss_dssp TCBCCHHHHHHHHHHCTTCC---
T ss_pred ccccCHHHHHHHHHhhhcCCCCC
Confidence 47776666789999999988753
No 26
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A*
Probab=27.00 E-value=44 Score=27.91 Aligned_cols=24 Identities=29% Similarity=0.595 Sum_probs=17.8
Q ss_pred EEEEcCEEEEe-eCCeEEEEEEEEE
Q 039166 129 VEVTPSTLQFN-EANQKASFAVTFK 152 (188)
Q Consensus 129 V~V~P~~l~f~-~~ge~~sf~Vt~~ 152 (188)
|.|+|.++.++ +.|+.++|.|+|+
T Consensus 74 vQi~PQ~v~l~LRpGd~vsF~V~vr 98 (280)
T 2p26_A 74 KQLSPQKVTLYLRPGQAAAFNVTFR 98 (280)
T ss_dssp SSEECSEEEEEECTTCCEEEEEEEC
T ss_pred eeeccceEEEEecCCCeEEEEEEEE
Confidence 67788765543 2389999999987
No 27
>3e9t_A Na/Ca exchange protein; CBD1, CALX, membrane, transmembrane, membrane protein; 1.60A {Drosophila melanogaster} SCOP: b.1.27.0
Probab=26.83 E-value=1.2e+02 Score=21.20 Aligned_cols=20 Identities=15% Similarity=0.243 Sum_probs=13.9
Q ss_pred EcCEEEEeeCCeE-EEEEEEEE
Q 039166 132 TPSTLQFNEANQK-ASFAVTFK 152 (188)
Q Consensus 132 ~P~~l~f~~~ge~-~sf~Vt~~ 152 (188)
....|.|.+ ||+ |.++|.+.
T Consensus 55 ~~g~l~F~~-Get~k~i~V~I~ 75 (114)
T 3e9t_A 55 RKGLLSFPP-GVDEQRFRIEVI 75 (114)
T ss_dssp CEEEEEECT-TCCEEEEEEEBC
T ss_pred cceEEEEeC-CcEEEEEEEEEE
Confidence 346899988 765 66666665
No 28
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=26.18 E-value=38 Score=24.43 Aligned_cols=38 Identities=11% Similarity=0.065 Sum_probs=19.2
Q ss_pred eecCCCceEEEEE--ECCCCeEEEEEcCEEEEeeCCeEEEEEEE
Q 039166 109 NVGQPNSLYKSLI--FVPQGVEVEVTPSTLQFNEANQKASFAVT 150 (188)
Q Consensus 109 NVg~~~~tY~a~v--~~p~gv~V~V~P~~l~f~~~ge~~sf~Vt 150 (188)
+-|...+++++.| .. .+. .-.|+.|++++ |++..|.++
T Consensus 11 ~~~~~~~~~~V~v~~~~-~~~--~F~p~~i~v~~-G~~V~~~~~ 50 (139)
T 2aan_A 11 GGGSGSGPVTIEIGSKG-EEL--AFDKTELTVSA-GQTVTIRFK 50 (139)
T ss_dssp ------CCEEEEEEBCT-TSS--SBSCSEEEECT-TCEEEEEEE
T ss_pred CCCCCCcCEEEEEEecC-Ccc--EEcCCeEEECC-CCEEEEEEE
Confidence 3455567777777 32 122 23477788765 776666544
No 29
>3zyz_A Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.10A {Hypocrea jecorina} PDB: 3zz1_A* 4i8d_A*
Probab=25.24 E-value=3.5e+02 Score=25.35 Aligned_cols=50 Identities=22% Similarity=0.272 Sum_probs=32.8
Q ss_pred cEEEEEEEEeecCCCceEEEE--EECCCCeEEEEEc-CEE------EEeeCCeEEEEEEEEE
Q 039166 100 AQTYTRTVTNVGQPNSLYKSL--IFVPQGVEVEVTP-STL------QFNEANQKASFAVTFK 152 (188)
Q Consensus 100 ~~tv~RTVTNVg~~~~tY~a~--v~~p~gv~V~V~P-~~l------~f~~~ge~~sf~Vt~~ 152 (188)
..+++=+|||+|+..+.-.|. +..|.+- + ..| ++| .+++ ||+++.++++.
T Consensus 614 ~~~vsv~VtNtG~~~G~EVvQlYv~~~~~~-~-~~P~k~L~gF~kv~L~p-Ges~~V~~~l~ 672 (713)
T 3zyz_A 614 VATVTVDIANSGQVTGAEVAQLYITYPSSA-P-RTPPKQLRGFAKLNLTP-GQSGTATFNIR 672 (713)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEEECCTTS-S-SCCSCEEEEEEEEEECT-TCEEEEEEEEE
T ss_pred eEEEEEEEEeCCCCccceeeeeeeecCCCC-C-CchhHHhhhcccceeCC-CCeEEEEEEEc
Confidence 568899999999876655544 4555431 1 123 223 3444 99999999998
No 30
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A*
Probab=24.29 E-value=1.5e+02 Score=28.48 Aligned_cols=64 Identities=16% Similarity=0.214 Sum_probs=37.9
Q ss_pred ccCccceEEe--ec---CccEEEEEEEEeec-CCCceEEEE--EECCCCeEEEEEcC-------EEEEeeCCeEEEEEEE
Q 039166 86 QLNYPSFSLT--LG---SGAQTYTRTVTNVG-QPNSLYKSL--IFVPQGVEVEVTPS-------TLQFNEANQKASFAVT 150 (188)
Q Consensus 86 dLNyPSi~v~--~~---~~~~tv~RTVTNVg-~~~~tY~a~--v~~p~gv~V~V~P~-------~l~f~~~ge~~sf~Vt 150 (188)
-|-|=+|... .+ .+..+++=+|||+| +..+.-.|. +..|.+ ++ ..|. ++.+++ ||+++.+++
T Consensus 717 GLSYTtF~ys~~~l~v~~~~~~v~v~V~NtG~~~~G~eVvQlYv~~~~~-~~-~~P~k~L~gF~kv~L~p-Ges~~V~~~ 793 (845)
T 3abz_A 717 GLSYTTFELDISDFKVTDDKIAISVDVKNTGDKFAGSEVVQVYFSALNS-KV-SRPVKELKGFEKVHLEP-GEKKTVNID 793 (845)
T ss_dssp CBCSSCEEEEEEEEEECSSEEEEEEEEEECCSSCCEEEEEEEEEEESSC-SS-CCCSCEEEEEEEEEECT-TCEEEEEEE
T ss_pred CCcceeEEEecccccccCCeEEEEEEEEECCcCCCcceeeeeeEeCCCC-Cc-chhhheeccceeEEECC-CCEEEEEEE
Confidence 4555555554 32 34678999999999 766555443 444432 11 1232 223444 999988888
Q ss_pred EE
Q 039166 151 FK 152 (188)
Q Consensus 151 ~~ 152 (188)
+.
T Consensus 794 l~ 795 (845)
T 3abz_A 794 LE 795 (845)
T ss_dssp EE
T ss_pred eC
Confidence 86
No 31
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A*
Probab=23.56 E-value=3.8e+02 Score=23.54 Aligned_cols=60 Identities=20% Similarity=0.088 Sum_probs=38.3
Q ss_pred ccceEEeecCccEEEEEEEEeecCCCceE-EEEEECCCCeEEEEEcCEEEEeeCCeEEEEEEEEE
Q 039166 89 YPSFSLTLGSGAQTYTRTVTNVGQPNSLY-KSLIFVPQGVEVEVTPSTLQFNEANQKASFAVTFK 152 (188)
Q Consensus 89 yPSi~v~~~~~~~tv~RTVTNVg~~~~tY-~a~v~~p~gv~V~V~P~~l~f~~~ge~~sf~Vt~~ 152 (188)
.|.+++..- ++.+++=+|||-+...-.- ++++..|.|++++. ....|.+ ||+.+..++|+
T Consensus 364 ~~~~~~~~g-~~~~~~~~vtn~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-g~~~t~~~~vt 424 (601)
T 1w8o_A 364 IPDVALEPG-QQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQG--SVEPLMP-GRQAKGQVTIT 424 (601)
T ss_dssp CCCEEECTT-CEEEEEEEEECCSSSCBSSCEEEEECCTTSEEEE--EECCBCT-TCEEEEEEEEE
T ss_pred CccceecCC-ceeEEEEEEECCCceeccCceEEEecCCCcEEec--cccccCC-CCceEEEEEEe
Confidence 455554432 3667888888865422111 34467788988877 3555655 89888877777
No 32
>2k9u_A Gamma filamin; cytoskeletal complex, alternative splicing, cell adhesion, cell junction, cell shape, cytoplasm, cytoskeleton; NMR {Homo sapiens}
Probab=22.23 E-value=2.1e+02 Score=20.03 Aligned_cols=57 Identities=19% Similarity=0.276 Sum_probs=33.7
Q ss_pred CCceEEEEEECCCCeEEEEEcCEEEEeeCCeEEEEEEEEE-eccCCCCCCCCCeEEEEEEEEcCCceEEeeEEEE
Q 039166 113 PNSLYKSLIFVPQGVEVEVTPSTLQFNEANQKASFAVTFK-RTSYGGNRQDMPFAQGYIKWSSDQHSVRIPLVVI 186 (188)
Q Consensus 113 ~~~tY~a~v~~p~gv~V~V~P~~l~f~~~ge~~sf~Vt~~-~~~~~~~~~~~~~~fG~l~Wsd~~h~VrsPi~v~ 186 (188)
.....++.+..|.++.+.+ .. ..--+|.|+++ ... +.|. =+|.| ++.|.--||..+.
T Consensus 47 g~~~l~v~v~~p~~~~~~v-------~d-~~dGty~v~Y~p~~~-------G~y~-I~V~~-~g~~I~gSPF~v~ 104 (119)
T 2k9u_A 47 GAGGLSIAVEGPSKAEIAF-------ED-RKDGSCGVSYVVQEP-------GDYE-VSIKF-NDEHIPDSPFVVP 104 (119)
T ss_dssp CSEEEEEEEESSSCCEEEE-------EC-CSSSEEEEEEECCSS-------EEEE-EEEEE-TSCBCSSCSEEEE
T ss_pred CCCcEEEEEeCCCCCeEEE-------EE-CCCCEEEEEEEECCC-------ceEE-EEEEE-CCEECCCCCEEEE
Confidence 3567788888887755543 22 33356777777 221 1222 24555 4677777887765
No 33
>3obl_A Lectin; novel beta barrel fold, high mannose glycan binding protein; HET: CXS; 1.20A {Planktothrix agardhii} PDB: 3s5v_A 3s5x_A* 3s60_A
Probab=21.46 E-value=2.2e+02 Score=20.97 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=37.8
Q ss_pred cccCccceEEeecCccEEEEEEEEeecCCCceEEEEEECCCCeEEE
Q 039166 85 AQLNYPSFSLTLGSGAQTYTRTVTNVGQPNSLYKSLIFVPQGVEVE 130 (188)
Q Consensus 85 ~dLNyPSi~v~~~~~~~tv~RTVTNVg~~~~tY~a~v~~p~gv~V~ 130 (188)
.+-|.|+|.+.+..+-.+++-|.|--|+.+--|+++...+....|.
T Consensus 28 ~nQnVva~~i~s~D~Gktl~Gtmty~GEGPIGfr~t~~g~n~Y~Ve 73 (132)
T 3obl_A 28 SDQNVVAINVESGDDGQTLNGTMTYAGEGPIGFRATLLGNNSYEVE 73 (132)
T ss_dssp SSCCEEEEEEECSSTTSEEEEEEEETTSCCEEEEEEEEETTEEEEE
T ss_pred CCCcEEeEEeEEcCCCceeEeEEEecCCCceEEeeEeccCcceEEE
Confidence 4578899999988888999999999999888898888766555543
No 34
>2w0p_A Filamin-A; alternative splicing, cytoskeleton/complex, phosphoprotein, disease mutation, immunoglobulin like, zinc, complex; 1.90A {Homo sapiens} SCOP: b.1.18.10 PDB: 2brq_A* 2jf1_A 3isw_A
Probab=20.10 E-value=1.3e+02 Score=20.17 Aligned_cols=56 Identities=16% Similarity=0.277 Sum_probs=31.1
Q ss_pred CceEEEEEECCCCeEEEEEcCEEEEeeCCeEEEEEEEEE-eccCCCCCCCCCeEEEEEEEEcCCceEEeeEEEE
Q 039166 114 NSLYKSLIFVPQGVEVEVTPSTLQFNEANQKASFAVTFK-RTSYGGNRQDMPFAQGYIKWSSDQHSVRIPLVVI 186 (188)
Q Consensus 114 ~~tY~a~v~~p~gv~V~V~P~~l~f~~~ge~~sf~Vt~~-~~~~~~~~~~~~~~fG~l~Wsd~~h~VrsPi~v~ 186 (188)
.....+.|..|.++.+.+ .. .+--+|.|++. ... +.| .=++.| ++.|.--||..|.
T Consensus 33 ~~~~~v~v~gp~~~~~~v-------~d-~~dGty~v~Y~p~~~-------G~y-~I~V~~-~g~~I~gSPF~v~ 89 (94)
T 2w0p_A 33 AGGLAIAVEGPSKAEISF-------ED-RKDGSCGVAYVVQEP-------GDY-EVSVKF-NEEHIPDSPFVVP 89 (94)
T ss_dssp SCCEEEEEEESSCCEEEE-------EE-CTTSCEEEEEECSSC-------EEE-EEEEEE-TTEECTTCSEEEE
T ss_pred CCcEEEEEECCCCCeEEE-------EE-CCCCEEEEEEEECCC-------ceE-EEEEEE-CCEECCCCCEEEE
Confidence 455777777787765543 22 22346777777 221 111 123444 5667777777665
Done!