BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039167
(923 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 142/330 (43%), Gaps = 57/330 (17%)
Query: 197 NSIEQK------GPHIISLVGMGGIGKTTLAQFAYNNGDV-EKNFEKRI-WVCVSDPFDE 248
N+I+QK P +++ GM G GK+ LA A + + E F + WV V
Sbjct: 134 NAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK---- 189
Query: 249 FRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKK-------------LLLVLDDVWNE 295
+ ++ L + +S Q + ++ K LL+LDDVW+
Sbjct: 190 -QDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS 248
Query: 296 NFHKWEQFNNCLKNCLYGSKILITTRKEAVA-RIMGSTNIISVNVLSGMECWLVFESLAF 354
W LK +IL+TTR ++V +MG ++ V G E L SL F
Sbjct: 249 ----W-----VLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSL-F 298
Query: 355 VGKSMEERENLEKIGREITRKCKGLPLATKTIASLLRS----------KNTEKEWQNILK 404
V ++ +L + I ++CKG PL I +LLR + K+++ I K
Sbjct: 299 VNM---KKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRK 355
Query: 405 SEIWEIEQVEKNLLAPLLLSYNELPSKVKQCFTYCAVFPKDVILKKDKLIELWMAQETKE 464
S ++ E +++ + +S L +K +T ++ KDV + L LW ET+E
Sbjct: 356 SSSYDYEALDE----AMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILW-DMETEE 410
Query: 465 MEEIGEEYFNVLASRSFFQEFGRGYDVELH 494
+E+I +E+ N S F G+ + LH
Sbjct: 411 VEDILQEFVN--KSLLFCDRNGKSFRYYLH 438
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 88/319 (27%), Positives = 145/319 (45%), Gaps = 55/319 (17%)
Query: 204 PHIISLVGMGGIGKTTLAQFAYNNGDV-EKNFEKRI-WVCVSDPFDE----------FRI 251
P +++ GM G GK+ LA A + + E F + WV + R+
Sbjct: 147 PGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRL 206
Query: 252 ARAIIEALTGCLPNFVE-----FQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNC 306
+ E+ + LP +E + LM ++KH + LL+LDDVW+ K F+N
Sbjct: 207 DQE--ESFSQRLPLNIEEAKDRLRVLM--LRKH---PRSLLILDDVWDPWVLK--AFDN- 256
Query: 307 LKNCLYGSKILITTRKEAVA-RIMGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENL 365
C +IL+TTR ++V +MG +++ V G E L SL FV ++E+L
Sbjct: 257 --QC----QILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSL-FVNM---KKEDL 306
Query: 366 EKIGREITRKCKGLPLATKTIASLLRS----------KNTEKEWQNILKSEIWEIEQVEK 415
I ++CKG PL I +LLR + K+++ I KS ++ E +++
Sbjct: 307 PAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDE 366
Query: 416 NLLAPLLLSYNELPSKVKQCFTYCAVFPKDVILKKDKLIELWMAQETKEMEEIGEEYFNV 475
+ +S L +K +T ++ KDV + L LW ET+E+E+I +E+ N
Sbjct: 367 ----AMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLW-DLETEEVEDILQEFVN- 420
Query: 476 LASRSFFQEFGRGYDVELH 494
S F G+ + LH
Sbjct: 421 -KSLLFCNRNGKSFCYYLH 438
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 142/330 (43%), Gaps = 57/330 (17%)
Query: 197 NSIEQK------GPHIISLVGMGGIGKTTLAQFAYNNGDV-EKNFEKRI-WVCVSDPFDE 248
N+I+QK P +++ GM G GK+ LA A + + E F + WV V
Sbjct: 140 NAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK---- 195
Query: 249 FRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKK-------------LLLVLDDVWNE 295
+ ++ L + +S Q + ++ K LL+LDDVW+
Sbjct: 196 -QDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWD- 253
Query: 296 NFHKWEQFNNCLKNCLYGSKILITTRKEAVA-RIMGSTNIISVNVLSGMECWLVFESLAF 354
W LK +IL+TTR ++V +MG ++ V G E L SL F
Sbjct: 254 ---SW-----VLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSL-F 304
Query: 355 VGKSMEERENLEKIGREITRKCKGLPLATKTIASLLRS----------KNTEKEWQNILK 404
V ++ +L + I ++CKG PL I +LLR + K+++ I K
Sbjct: 305 VNM---KKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRK 361
Query: 405 SEIWEIEQVEKNLLAPLLLSYNELPSKVKQCFTYCAVFPKDVILKKDKLIELWMAQETKE 464
S ++ E +++ + +S L +K +T ++ KDV + L LW ET+E
Sbjct: 362 SSSYDYEALDE----AMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILW-DMETEE 416
Query: 465 MEEIGEEYFNVLASRSFFQEFGRGYDVELH 494
+E+I +E+ N S F G+ + LH
Sbjct: 417 VEDILQEFVN--KSLLFCDRNGKSFRYYLH 444
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 87/319 (27%), Positives = 144/319 (45%), Gaps = 55/319 (17%)
Query: 204 PHIISLVGMGGIGKTTLAQFAYNNGDV-EKNFEKRI-WVCVSDPFDE----------FRI 251
P +++ GM G GK+ LA A + + E F + WV + R+
Sbjct: 154 PGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRL 213
Query: 252 ARAIIEALTGCLPNFVE-----FQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNC 306
+ E+ + LP +E + LM ++KH + LL+LDDVW+ K F+N
Sbjct: 214 DQE--ESFSQRLPLNIEEAKDRLRVLM--LRKH---PRSLLILDDVWDPWVLK--AFDN- 263
Query: 307 LKNCLYGSKILITTRKEAVA-RIMGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENL 365
C +IL+TT ++V +MG +++ V G E L SL FV ++E+L
Sbjct: 264 --QC----QILLTTSDKSVTDSVMGPKHVVPVESGLGREKGLEILSL-FVNM---KKEDL 313
Query: 366 EKIGREITRKCKGLPLATKTIASLLRS----------KNTEKEWQNILKSEIWEIEQVEK 415
I ++CKG PL I +LLR + K+++ I KS ++ E +++
Sbjct: 314 PAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDE 373
Query: 416 NLLAPLLLSYNELPSKVKQCFTYCAVFPKDVILKKDKLIELWMAQETKEMEEIGEEYFNV 475
+ +S L +K +T ++ KDV + L LW ET+E+E+I +E+ N
Sbjct: 374 ----AMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLW-DLETEEVEDILQEFVN- 427
Query: 476 LASRSFFQEFGRGYDVELH 494
S F G+ + LH
Sbjct: 428 -KSLLFCNRNGKSFCYYLH 445
>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
Intracellular Mla Immune Receptors Defines A Minimal
Functional Module For Triggering Cell Death
Length = 115
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 59/102 (57%), Gaps = 15/102 (14%)
Query: 4 AIISPLLQQLTTMAAEETKEQVRLVTGVGKEVKKLSRNLQAIQAVL---HDVEKRQVKEE 60
A IS L+ +L + EE K L GV K ++ L + L++ A L +V + Q+ +
Sbjct: 1 AAISNLIPKLGELLTEEFK----LHKGVKKNIEDLGKELESXNAALIKIGEVPREQLDSQ 56
Query: 61 SVRLWLDQLRDVSYNMEDVLEEWSTARLKLKIDGV--DDHEN 100
+LW D++R++SY +EDV++++ +++DG+ DD+ N
Sbjct: 57 D-KLWADEVRELSYVIEDVVDKFL-----VQVDGIKSDDNNN 92
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 36.6 bits (83), Expect = 0.072, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 13/94 (13%)
Query: 549 PQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNI-EKLLHLKYLNLA-NQMEIERLPETL 606
P +FD L L+ L L + + +P + + L L L+L NQ+ + LP +
Sbjct: 57 PGVFDSLINLKELYLGSNQ-------LGALPVGVFDSLTQLTVLDLGTNQLTV--LPSAV 107
Query: 607 CE-LYNLEHLNVNCCVKLRELPQGIGRLRKLMYL 639
+ L +L+ L + CC KL ELP+GI RL L +L
Sbjct: 108 FDRLVHLKELFM-CCNKLTELPRGIERLTHLTHL 140
Score = 33.1 bits (74), Expect = 0.73, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 12/88 (13%)
Query: 516 IGCGPMPIYDNIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFI 575
+G P+ ++D++ L ++L T +V+ +FD+L L+ L + + +
Sbjct: 76 LGALPVGVFDSLTQL----TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK-------L 124
Query: 576 KEVPTNIEKLLHLKYLNLANQMEIERLP 603
E+P IE+L HL +L L +Q +++ +P
Sbjct: 125 TELPRGIERLTHLTHLAL-DQNQLKSIP 151
>pdb|1FTS|A Chain A, Signal Recognition Particle Receptor From E. Coli
Length = 295
Score = 34.3 bits (77), Expect = 0.32, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 175 DESEIFGR-KDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKN 233
D ++G K+E E++ ++ ++E K P +I +VG+ G+GKTT G + +
Sbjct: 63 DAEALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTI------GKLARQ 116
Query: 234 FEKRIWVCVSDPFDEFRIA 252
FE++ + D FR A
Sbjct: 117 FEQQGKSVMLAAGDTFRAA 135
>pdb|2QY9|A Chain A, Structure Of The Ng+1 Construct Of The E. Coli Srp
Receptor Ftsy
Length = 309
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 183 KDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCV 242
K+E E++ ++ ++E K P +I +VG+ G+GKTT G + + FE++ +
Sbjct: 78 KEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTI------GKLARQFEQQGKSVM 131
Query: 243 SDPFDEFRIA 252
D FR A
Sbjct: 132 LAAGDTFRAA 141
>pdb|2XXA|B Chain B, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|D Chain D, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 302
Score = 34.3 bits (77), Expect = 0.34, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 175 DESEIFGR-KDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKN 233
D ++G K+E E++ ++ ++E K P +I +VG+ G+GKTT G + +
Sbjct: 68 DAEALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTI------GKLARQ 121
Query: 234 FEKRIWVCVSDPFDEFRIA 252
FE++ + D FR A
Sbjct: 122 FEQQGKSVMLAAGDTFRAA 140
>pdb|2YHS|A Chain A, Structure Of The E. Coli Srp Receptor Ftsy
Length = 503
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 183 KDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCV 242
K+E E++ ++ ++E K P +I +VG+ G+GKTT G + + FE++ +
Sbjct: 272 KEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTI------GKLARQFEQQGKSVM 325
Query: 243 SDPFDEFRIA 252
D FR A
Sbjct: 326 LAAGDTFRAA 335
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 9/141 (6%)
Query: 500 AMSSFAEKKILHLTLAIGCGPMPIYDNIEALRGLRSLLLESTKHSSVILPQLFDKLTCLR 559
+S+ +E LHL+ G +P ++ +L LR L L I PQ + L
Sbjct: 410 TLSNCSELVSLHLSFNYLSGTIP--SSLGSLSKLRDLKLWLNMLEGEI-PQELMYVKTLE 466
Query: 560 ALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPETLCELYNLEHLNVNC 619
L L+ + D E+P+ + +L +++L+N +P+ + L NL L ++
Sbjct: 467 TLILDFN------DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 520
Query: 620 CVKLRELPQGIGRLRKLMYLD 640
+P +G R L++LD
Sbjct: 521 NSFSGNIPAELGDCRSLIWLD 541
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 19/146 (13%)
Query: 500 AMSSFAEKKILHLTLAIGCGPMPIYDNIEALRGLRSL-----LLESTKHSSVILPQLFDK 554
+S+ +E LHL+ G +P ++ +L LR L +LE +PQ
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIP--SSLGSLSKLRDLKLWLNMLEGE------IPQELMY 464
Query: 555 LTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPETLCELYNLEH 614
+ L L L+ + D E+P+ + +L +++L+N +P+ + L NL
Sbjct: 465 VKTLETLILDFN------DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518
Query: 615 LNVNCCVKLRELPQGIGRLRKLMYLD 640
L ++ +P +G R L++LD
Sbjct: 519 LKLSNNSFSGNIPAELGDCRSLIWLD 544
>pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp
Length = 592
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 69 LRDVSYNMED-----VLEEWSTARLKLKIDGVDDHENAALDPNKKVCSFFPAASCFGCKR 123
LRD S ++E +E+ T LKLK E L P + FFP CF R
Sbjct: 182 LRDFSLDLEADGQPLTPDEYLTYSLKLKKGTSQKDETFNL-PRLCIRKFFPKKKCFVFDR 240
Query: 124 LFLRRDIALKLKEINESLD 142
RR +A K +E LD
Sbjct: 241 PVHRRKLAQLEKLQDEELD 259
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 61/135 (45%), Gaps = 19/135 (14%)
Query: 503 SFAEKKILHLTLAIGCGPMPIYDN-IEALRGLRSLLLESTKHSSVILPQLFDKLTCLRAL 561
SF E ++L L+ C I D ++L L +L+L S+ L F L+ L+ L
Sbjct: 50 SFPELQVLDLS---RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA-FSGLSSLQKL 105
Query: 562 KLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLA-NQMEIERLPETLCELYNLEHLNVNC- 619
N E+F I L LK LN+A N ++ +LPE L NLEHL+++
Sbjct: 106 VAVETNLASLENF------PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
Query: 620 ------CVKLRELPQ 628
C LR L Q
Sbjct: 160 KIQSIYCTDLRVLHQ 174
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 61/135 (45%), Gaps = 19/135 (14%)
Query: 503 SFAEKKILHLTLAIGCGPMPIYDN-IEALRGLRSLLLESTKHSSVILPQLFDKLTCLRAL 561
SF E ++L L+ C I D ++L L +L+L S+ L F L+ L+ L
Sbjct: 51 SFPELQVLDLS---RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKL 106
Query: 562 KLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLA-NQMEIERLPETLCELYNLEHLNVNC- 619
N E+F I L LK LN+A N ++ +LPE L NLEHL+++
Sbjct: 107 VAVETNLASLENF------PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 160
Query: 620 ------CVKLRELPQ 628
C LR L Q
Sbjct: 161 KIQSIYCTDLRVLHQ 175
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 61/135 (45%), Gaps = 19/135 (14%)
Query: 503 SFAEKKILHLTLAIGCGPMPIYDN-IEALRGLRSLLLESTKHSSVILPQLFDKLTCLRAL 561
SF E ++L L+ C I D ++L L +L+L S+ L F L+ L+ L
Sbjct: 52 SFPELQVLDLS---RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKL 107
Query: 562 KLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLA-NQMEIERLPETLCELYNLEHLNVNC- 619
N E+F I L LK LN+A N ++ +LPE L NLEHL+++
Sbjct: 108 VAVETNLASLENF------PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 161
Query: 620 ------CVKLRELPQ 628
C LR L Q
Sbjct: 162 KIQSIYCTDLRVLHQ 176
>pdb|2B8W|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B8W|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B92|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2B92|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2BC9|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Non-Hydrolysable Gtp Analogue Gppnhp
pdb|2D4H|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
pdb|2D4H|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
Length = 328
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 69 LRDVSYNMED-----VLEEWSTARLKLKIDGVDDHENAALDPNKKVCSFFPAASCFGCKR 123
LRD S ++E +E+ T LKLK E L P + FFP CF R
Sbjct: 193 LRDFSLDLEADGQPLTPDEYLTYSLKLKKGTSQKDETFNL-PRLCIRKFFPKKKCFVFDR 251
Query: 124 LFLRRDIALKLKEINESLD 142
RR +A K +E LD
Sbjct: 252 PVHRRKLAQLEKLQDEELD 270
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 61/135 (45%), Gaps = 19/135 (14%)
Query: 503 SFAEKKILHLTLAIGCGPMPIYDN-IEALRGLRSLLLESTKHSSVILPQLFDKLTCLRAL 561
SF E ++L L+ C I D ++L L +L+L S+ L F L+ L+ L
Sbjct: 74 SFPELQVLDLS---RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA-FSGLSSLQKL 129
Query: 562 KLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLA-NQMEIERLPETLCELYNLEHLNVNC- 619
N E+F I L LK LN+A N ++ +LPE L NLEHL+++
Sbjct: 130 VAVETNLASLENF------PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183
Query: 620 ------CVKLRELPQ 628
C LR L Q
Sbjct: 184 KIQSIYCTDLRVLHQ 198
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 61/135 (45%), Gaps = 19/135 (14%)
Query: 503 SFAEKKILHLTLAIGCGPMPIYDN-IEALRGLRSLLLESTKHSSVILPQLFDKLTCLRAL 561
SF E ++L L+ C I D ++L L +L+L S+ L F L+ L+ L
Sbjct: 51 SFPELQVLDLS---RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKL 106
Query: 562 KLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLA-NQMEIERLPETLCELYNLEHLNVNC- 619
N E+F I L LK LN+A N ++ +LPE L NLEHL+++
Sbjct: 107 VAVETNLASLENF------PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 160
Query: 620 ------CVKLRELPQ 628
C LR L Q
Sbjct: 161 KIQSIYCTDLRVLHQ 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,236,143
Number of Sequences: 62578
Number of extensions: 1070516
Number of successful extensions: 3162
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 3127
Number of HSP's gapped (non-prelim): 51
length of query: 923
length of database: 14,973,337
effective HSP length: 108
effective length of query: 815
effective length of database: 8,214,913
effective search space: 6695154095
effective search space used: 6695154095
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)