Query 039167
Match_columns 923
No_of_seqs 567 out of 4307
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 06:59:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039167.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039167hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.3E-83 7.1E-88 750.3 41.4 749 2-799 1-798 (889)
2 PLN03210 Resistant to P. syrin 100.0 4.3E-60 9.2E-65 588.9 48.5 653 174-901 181-908 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.1E-42 2.4E-47 372.1 16.4 273 182-461 1-280 (287)
4 PLN00113 leucine-rich repeat r 99.9 3.6E-24 7.8E-29 268.4 17.8 282 508-807 70-368 (968)
5 PLN00113 leucine-rich repeat r 99.9 1.1E-23 2.4E-28 264.0 15.6 368 508-898 165-559 (968)
6 KOG0444 Cytoskeletal regulator 99.9 7E-25 1.5E-29 231.9 -5.8 345 507-902 32-378 (1255)
7 KOG0444 Cytoskeletal regulator 99.8 3.2E-23 7E-28 219.4 -5.1 334 507-892 55-393 (1255)
8 PLN03210 Resistant to P. syrin 99.8 6.7E-19 1.5E-23 220.5 20.1 299 529-878 609-910 (1153)
9 KOG4194 Membrane glycoprotein 99.8 7.2E-20 1.6E-24 193.4 3.7 132 742-892 313-446 (873)
10 KOG4194 Membrane glycoprotein 99.8 6.8E-20 1.5E-24 193.5 2.9 344 505-898 76-428 (873)
11 KOG0472 Leucine-rich repeat pr 99.8 1.3E-20 2.7E-25 190.6 -6.8 337 508-898 184-540 (565)
12 KOG0472 Leucine-rich repeat pr 99.7 7.5E-19 1.6E-23 177.9 -8.3 309 524-894 84-467 (565)
13 KOG0618 Serine/threonine phosp 99.6 3.6E-17 7.7E-22 182.8 -4.5 66 744-813 239-327 (1081)
14 KOG4658 Apoptotic ATPase [Sign 99.6 8E-16 1.7E-20 182.4 4.0 318 526-879 518-847 (889)
15 KOG0618 Serine/threonine phosp 99.5 6.7E-16 1.4E-20 172.7 -4.1 311 526-892 194-507 (1081)
16 PRK15387 E3 ubiquitin-protein 99.5 3.5E-13 7.6E-18 156.5 14.0 242 531-879 222-463 (788)
17 KOG0617 Ras suppressor protein 99.3 1.3E-14 2.8E-19 130.3 -6.2 154 525-694 27-182 (264)
18 PRK15370 E3 ubiquitin-protein 99.3 1.8E-12 3.8E-17 151.9 9.0 205 531-812 199-404 (754)
19 PRK15387 E3 ubiquitin-protein 99.3 6.3E-12 1.4E-16 146.2 13.1 30 862-892 423-452 (788)
20 PRK15370 E3 ubiquitin-protein 99.3 2.1E-12 4.6E-17 151.2 8.3 249 532-873 179-427 (754)
21 PRK00411 cdc6 cell division co 99.3 8.6E-10 1.9E-14 123.6 28.3 298 175-485 28-358 (394)
22 PRK04841 transcriptional regul 99.3 5.2E-10 1.1E-14 140.1 24.9 268 177-483 14-308 (903)
23 TIGR03015 pepcterm_ATPase puta 99.2 1.1E-09 2.3E-14 116.0 22.3 183 203-390 42-242 (269)
24 KOG0617 Ras suppressor protein 99.2 3.1E-13 6.8E-18 121.5 -5.3 149 507-668 33-183 (264)
25 TIGR02928 orc1/cdc6 family rep 99.2 1.3E-08 2.8E-13 112.9 28.2 299 175-485 13-350 (365)
26 PF01637 Arch_ATPase: Archaeal 99.2 2.7E-10 5.8E-15 117.9 13.0 196 179-385 1-233 (234)
27 PRK00080 ruvB Holliday junctio 99.1 3.8E-09 8.3E-14 114.4 20.1 279 177-487 25-312 (328)
28 KOG4237 Extracellular matrix p 99.1 3.6E-12 7.8E-17 130.0 -4.5 255 532-812 68-338 (498)
29 TIGR00635 ruvB Holliday juncti 99.1 5.7E-09 1.2E-13 112.4 19.5 278 177-487 4-291 (305)
30 cd00116 LRR_RI Leucine-rich re 99.1 1.8E-11 4E-16 133.3 -0.1 118 526-644 18-147 (319)
31 cd00116 LRR_RI Leucine-rich re 99.0 6E-11 1.3E-15 129.3 1.2 247 550-806 17-289 (319)
32 KOG4237 Extracellular matrix p 99.0 3.6E-11 7.7E-16 122.8 -3.3 274 506-805 66-356 (498)
33 PF05729 NACHT: NACHT domain 98.9 6.4E-09 1.4E-13 101.1 12.0 142 205-352 1-162 (166)
34 COG2909 MalT ATP-dependent tra 98.8 4.6E-07 9.9E-12 102.9 22.3 266 186-483 24-314 (894)
35 PTZ00112 origin recognition co 98.8 3.4E-07 7.4E-12 104.5 21.2 296 175-483 753-1084(1164)
36 KOG0532 Leucine-rich repeat (L 98.8 2.4E-10 5.2E-15 122.2 -3.8 196 528-782 72-270 (722)
37 PRK06893 DNA replication initi 98.8 2.6E-07 5.7E-12 94.1 16.6 156 204-390 39-207 (229)
38 COG2256 MGS1 ATPase related to 98.7 5.8E-07 1.3E-11 93.6 17.5 173 174-381 27-207 (436)
39 PRK13342 recombination factor 98.7 6.2E-07 1.3E-11 100.2 18.6 178 178-389 13-199 (413)
40 COG3899 Predicted ATPase [Gene 98.6 3.2E-07 7E-12 110.3 15.6 266 178-457 1-333 (849)
41 PF13401 AAA_22: AAA domain; P 98.6 1.1E-07 2.4E-12 88.1 8.6 118 203-322 3-125 (131)
42 TIGR03420 DnaA_homol_Hda DnaA 98.6 6.7E-07 1.4E-11 91.8 14.9 172 182-390 22-205 (226)
43 PRK07003 DNA polymerase III su 98.6 5.1E-06 1.1E-10 94.9 21.8 182 177-388 16-223 (830)
44 PF05496 RuvB_N: Holliday junc 98.6 8.7E-07 1.9E-11 86.3 12.9 183 177-392 24-227 (233)
45 PTZ00202 tuzin; Provisional 98.5 2.1E-05 4.6E-10 83.7 23.5 166 171-352 256-433 (550)
46 PRK14961 DNA polymerase III su 98.5 4.6E-06 1E-10 91.4 19.2 182 177-384 16-218 (363)
47 PRK05564 DNA polymerase III su 98.5 3.3E-06 7.2E-11 90.9 17.5 178 178-385 5-189 (313)
48 KOG3207 Beta-tubulin folding c 98.5 1.9E-08 4.1E-13 104.8 0.1 16 744-759 299-314 (505)
49 PF13173 AAA_14: AAA domain 98.5 5.8E-07 1.3E-11 82.6 9.9 120 204-345 2-127 (128)
50 COG4886 Leucine-rich repeat (L 98.5 9.8E-08 2.1E-12 107.1 5.6 198 535-790 97-295 (394)
51 PRK12402 replication factor C 98.5 3.9E-06 8.5E-11 92.0 17.7 198 177-385 15-225 (337)
52 PF14580 LRR_9: Leucine-rich r 98.5 1.2E-07 2.6E-12 90.6 4.6 129 527-669 15-151 (175)
53 PRK14960 DNA polymerase III su 98.5 6.5E-06 1.4E-10 93.1 18.7 178 177-384 15-217 (702)
54 PRK14949 DNA polymerase III su 98.5 6.3E-06 1.4E-10 96.2 19.0 182 177-385 16-219 (944)
55 KOG4341 F-box protein containi 98.5 1.1E-08 2.4E-13 106.0 -3.3 90 531-624 138-230 (483)
56 PRK14963 DNA polymerase III su 98.5 8.9E-07 1.9E-11 100.0 11.6 198 178-388 15-220 (504)
57 KOG1259 Nischarin, modulator o 98.5 3.5E-08 7.6E-13 97.4 0.1 133 711-878 282-415 (490)
58 cd00009 AAA The AAA+ (ATPases 98.4 1.7E-06 3.8E-11 82.0 11.9 124 180-323 1-130 (151)
59 COG1474 CDC6 Cdc6-related prot 98.4 4.3E-05 9.4E-10 82.7 23.6 206 177-386 17-238 (366)
60 PRK06645 DNA polymerase III su 98.4 1.1E-05 2.4E-10 90.8 19.4 193 178-383 22-226 (507)
61 PRK12323 DNA polymerase III su 98.4 6E-06 1.3E-10 93.1 17.0 180 177-386 16-225 (700)
62 PF14580 LRR_9: Leucine-rich r 98.4 6.3E-08 1.4E-12 92.5 1.2 107 552-670 15-125 (175)
63 PF13191 AAA_16: AAA ATPase do 98.4 3.6E-07 7.8E-12 90.5 6.5 47 178-227 1-47 (185)
64 PRK14957 DNA polymerase III su 98.4 1.1E-05 2.4E-10 91.3 18.7 185 177-388 16-223 (546)
65 TIGR02903 spore_lon_C ATP-depe 98.4 6.4E-05 1.4E-09 87.7 25.6 202 178-389 155-398 (615)
66 KOG4341 F-box protein containi 98.4 1.3E-08 2.9E-13 105.3 -4.2 310 556-922 138-456 (483)
67 KOG1909 Ran GTPase-activating 98.4 1E-07 2.2E-12 96.8 1.7 97 524-624 23-133 (382)
68 PRK04195 replication factor C 98.4 5.5E-05 1.2E-09 86.4 23.8 186 177-390 14-206 (482)
69 KOG3207 Beta-tubulin folding c 98.4 1.3E-07 2.9E-12 98.6 1.6 215 506-760 120-340 (505)
70 PLN03025 replication factor C 98.4 9.3E-06 2E-10 87.6 16.0 182 177-383 13-197 (319)
71 PRK08727 hypothetical protein; 98.3 2E-05 4.4E-10 80.5 17.2 149 204-383 41-201 (233)
72 PRK00440 rfc replication facto 98.3 2.4E-05 5.2E-10 85.1 18.8 181 177-384 17-201 (319)
73 KOG0532 Leucine-rich repeat (L 98.3 4.2E-08 9.1E-13 105.4 -2.8 128 527-668 117-244 (722)
74 KOG1909 Ran GTPase-activating 98.3 2.9E-08 6.2E-13 100.7 -3.9 151 709-873 153-310 (382)
75 PRK08691 DNA polymerase III su 98.3 2.2E-05 4.8E-10 89.8 18.4 179 177-385 16-219 (709)
76 COG4886 Leucine-rich repeat (L 98.3 3.9E-07 8.4E-12 102.3 4.4 181 525-760 110-291 (394)
77 KOG2028 ATPase related to the 98.3 1.3E-05 2.7E-10 81.9 14.5 158 201-380 159-330 (554)
78 PRK14956 DNA polymerase III su 98.3 7.5E-06 1.6E-10 90.1 13.9 195 177-383 18-219 (484)
79 cd01128 rho_factor Transcripti 98.3 1E-06 2.3E-11 89.8 6.6 89 203-292 15-112 (249)
80 PRK14962 DNA polymerase III su 98.3 2.5E-05 5.5E-10 87.6 17.7 201 177-403 14-239 (472)
81 PRK08903 DnaA regulatory inact 98.3 2.3E-05 4.9E-10 80.3 15.9 153 203-390 41-203 (227)
82 KOG1259 Nischarin, modulator o 98.3 1.6E-07 3.5E-12 92.9 -0.3 129 527-669 280-410 (490)
83 PRK05896 DNA polymerase III su 98.3 3.4E-05 7.3E-10 87.4 18.0 196 177-388 16-223 (605)
84 PRK13341 recombination factor 98.3 1.3E-05 2.8E-10 94.3 15.2 169 177-381 28-212 (725)
85 PRK09112 DNA polymerase III su 98.2 4.9E-05 1.1E-09 82.0 18.3 197 176-387 22-241 (351)
86 COG3903 Predicted ATPase [Gene 98.2 2.6E-06 5.6E-11 89.6 8.2 236 203-449 13-258 (414)
87 PRK14964 DNA polymerase III su 98.2 5.1E-05 1.1E-09 84.7 18.8 181 177-383 13-214 (491)
88 PRK07994 DNA polymerase III su 98.2 3.7E-05 8E-10 88.5 18.1 194 177-386 16-220 (647)
89 TIGR02397 dnaX_nterm DNA polym 98.2 7.4E-05 1.6E-09 82.5 19.7 184 177-387 14-219 (355)
90 PRK14958 DNA polymerase III su 98.2 3.6E-05 7.8E-10 87.4 17.3 183 177-385 16-219 (509)
91 COG2255 RuvB Holliday junction 98.2 6.1E-05 1.3E-09 75.0 16.2 268 177-488 26-314 (332)
92 PRK07940 DNA polymerase III su 98.2 3.9E-05 8.5E-10 83.9 16.7 178 178-386 6-213 (394)
93 PRK07471 DNA polymerase III su 98.2 5.1E-05 1.1E-09 82.4 17.4 196 177-387 19-239 (365)
94 PRK14951 DNA polymerase III su 98.2 4.8E-05 1E-09 87.4 17.9 196 177-385 16-224 (618)
95 PLN03150 hypothetical protein; 98.2 4.2E-06 9.1E-11 98.4 9.5 93 558-656 420-512 (623)
96 PRK08084 DNA replication initi 98.2 6.5E-05 1.4E-09 76.9 16.9 155 204-389 45-212 (235)
97 PRK14955 DNA polymerase III su 98.2 3.4E-05 7.3E-10 85.7 15.9 198 177-383 16-225 (397)
98 KOG2120 SCF ubiquitin ligase, 98.2 5.9E-08 1.3E-12 95.9 -5.3 158 587-806 186-349 (419)
99 PRK09087 hypothetical protein; 98.2 3.8E-05 8.2E-10 77.8 14.6 143 204-387 44-196 (226)
100 PRK09111 DNA polymerase III su 98.2 7.6E-05 1.6E-09 86.0 18.7 198 177-387 24-234 (598)
101 PRK09376 rho transcription ter 98.2 3.4E-06 7.4E-11 89.4 7.1 100 187-292 157-265 (416)
102 TIGR00678 holB DNA polymerase 98.1 8.6E-05 1.9E-09 73.5 16.3 90 282-381 95-186 (188)
103 PRK14969 DNA polymerase III su 98.1 6.6E-05 1.4E-09 85.9 17.5 184 177-386 16-221 (527)
104 PLN03150 hypothetical protein; 98.1 2.9E-06 6.2E-11 99.8 6.6 106 533-645 420-526 (623)
105 PF05621 TniB: Bacterial TniB 98.1 0.00017 3.6E-09 74.1 17.4 204 177-384 34-259 (302)
106 PRK05642 DNA replication initi 98.1 0.00012 2.6E-09 74.8 16.5 156 204-390 45-212 (234)
107 PRK14959 DNA polymerase III su 98.1 0.00012 2.7E-09 83.4 17.8 196 178-390 17-225 (624)
108 PRK14952 DNA polymerase III su 98.1 0.0002 4.4E-09 82.1 19.6 187 177-390 13-224 (584)
109 PF00308 Bac_DnaA: Bacterial d 98.1 0.0003 6.4E-09 71.0 18.4 184 178-386 10-208 (219)
110 PRK14087 dnaA chromosomal repl 98.1 0.00016 3.6E-09 81.1 18.1 167 204-388 141-321 (450)
111 PRK14970 DNA polymerase III su 98.0 0.0002 4.4E-09 79.2 18.4 181 177-383 17-206 (367)
112 TIGR01242 26Sp45 26S proteasom 98.0 5.4E-05 1.2E-09 83.4 13.3 179 176-380 121-328 (364)
113 PRK07764 DNA polymerase III su 98.0 0.00021 4.6E-09 85.3 18.9 175 178-383 16-218 (824)
114 PRK14954 DNA polymerase III su 98.0 0.00026 5.7E-09 81.8 19.0 201 177-386 16-229 (620)
115 KOG0989 Replication factor C, 98.0 0.00012 2.7E-09 73.7 14.1 182 177-379 36-223 (346)
116 PRK14950 DNA polymerase III su 98.0 9.6E-05 2.1E-09 86.2 15.7 196 177-387 16-222 (585)
117 PRK07133 DNA polymerase III su 98.0 0.00032 6.9E-09 81.5 19.1 183 177-387 18-221 (725)
118 TIGR00362 DnaA chromosomal rep 98.0 0.00075 1.6E-08 75.6 21.6 180 204-405 136-336 (405)
119 PRK14953 DNA polymerase III su 98.0 0.0005 1.1E-08 77.7 20.0 183 178-387 17-221 (486)
120 PRK08451 DNA polymerase III su 97.9 0.00051 1.1E-08 77.6 19.5 180 177-386 14-218 (535)
121 PF13855 LRR_8: Leucine rich r 97.9 1E-05 2.2E-10 63.1 4.1 56 587-644 2-59 (61)
122 TIGR00767 rho transcription te 97.9 3E-05 6.4E-10 82.9 8.6 89 203-292 167-264 (415)
123 PHA02544 44 clamp loader, smal 97.9 0.00016 3.5E-09 78.3 14.6 147 177-350 21-170 (316)
124 KOG2227 Pre-initiation complex 97.9 0.00031 6.7E-09 75.0 15.5 214 175-390 148-376 (529)
125 PRK14971 DNA polymerase III su 97.9 0.00054 1.2E-08 79.8 19.1 180 177-383 17-219 (614)
126 PRK06305 DNA polymerase III su 97.9 0.00059 1.3E-08 76.7 18.5 183 177-386 17-223 (451)
127 PRK00149 dnaA chromosomal repl 97.9 0.00095 2E-08 75.8 20.3 181 203-405 147-348 (450)
128 PF13855 LRR_8: Leucine rich r 97.9 1.3E-05 2.8E-10 62.6 3.5 58 556-621 1-60 (61)
129 PRK14948 DNA polymerase III su 97.9 0.00078 1.7E-08 78.4 19.5 196 177-386 16-222 (620)
130 PRK06620 hypothetical protein; 97.9 0.00073 1.6E-08 67.8 16.8 134 205-383 45-186 (214)
131 PRK14086 dnaA chromosomal repl 97.8 0.0032 7E-08 71.8 23.6 155 205-381 315-483 (617)
132 CHL00181 cbbX CbbX; Provisiona 97.8 0.0013 2.7E-08 69.3 19.0 134 205-354 60-210 (287)
133 PF05673 DUF815: Protein of un 97.8 0.00091 2E-08 66.5 16.6 126 174-326 24-154 (249)
134 PRK06647 DNA polymerase III su 97.8 0.0011 2.5E-08 76.1 19.6 178 177-385 16-219 (563)
135 PRK14088 dnaA chromosomal repl 97.8 0.0013 2.8E-08 73.9 19.5 159 204-383 130-302 (440)
136 KOG2982 Uncharacterized conser 97.8 1E-05 2.2E-10 80.5 2.4 229 535-803 49-287 (418)
137 PRK11331 5-methylcytosine-spec 97.8 0.00012 2.6E-09 79.7 10.7 120 177-308 175-298 (459)
138 PF12799 LRR_4: Leucine Rich r 97.8 2.9E-05 6.4E-10 55.3 4.0 39 587-627 2-40 (44)
139 TIGR03345 VI_ClpV1 type VI sec 97.8 0.00029 6.2E-09 85.3 14.9 152 177-352 187-362 (852)
140 KOG2543 Origin recognition com 97.8 0.0024 5.1E-08 66.7 18.9 167 176-352 5-192 (438)
141 TIGR02881 spore_V_K stage V sp 97.8 0.00055 1.2E-08 71.6 14.9 161 178-354 7-192 (261)
142 PF14516 AAA_35: AAA-like doma 97.7 0.01 2.2E-07 64.2 24.7 202 175-393 9-246 (331)
143 PRK14965 DNA polymerase III su 97.7 0.0012 2.6E-08 76.7 18.4 185 177-389 16-224 (576)
144 PRK07399 DNA polymerase III su 97.7 0.0055 1.2E-07 65.3 21.7 196 178-387 5-222 (314)
145 PRK15386 type III secretion pr 97.7 8.7E-05 1.9E-09 79.9 8.0 65 552-628 48-112 (426)
146 TIGR02880 cbbX_cfxQ probable R 97.7 0.00077 1.7E-08 71.0 14.8 132 206-353 60-208 (284)
147 PRK03992 proteasome-activating 97.7 0.00035 7.5E-09 77.3 12.5 178 176-379 130-336 (389)
148 TIGR02639 ClpA ATP-dependent C 97.7 0.00057 1.2E-08 82.2 14.8 155 178-353 183-358 (731)
149 PRK12422 chromosomal replicati 97.6 0.0016 3.5E-08 72.9 17.0 153 204-378 141-305 (445)
150 PRK05563 DNA polymerase III su 97.6 0.0026 5.7E-08 73.5 19.2 192 177-384 16-218 (559)
151 PRK05707 DNA polymerase III su 97.6 0.0019 4E-08 69.3 16.7 97 282-386 105-203 (328)
152 KOG0531 Protein phosphatase 1, 97.6 1.3E-05 2.8E-10 90.1 -0.1 82 552-644 91-172 (414)
153 COG0593 DnaA ATPase involved i 97.6 0.0069 1.5E-07 65.6 20.4 162 176-357 87-261 (408)
154 KOG0531 Protein phosphatase 1, 97.6 8.6E-06 1.9E-10 91.5 -1.8 106 554-671 70-175 (414)
155 PRK10536 hypothetical protein; 97.6 0.0016 3.5E-08 65.7 14.0 132 177-323 55-213 (262)
156 PRK08116 hypothetical protein; 97.6 0.00037 7.9E-09 72.6 9.9 103 205-322 115-220 (268)
157 COG3267 ExeA Type II secretory 97.6 0.0074 1.6E-07 59.9 18.1 179 203-388 50-247 (269)
158 PF12799 LRR_4: Leucine Rich r 97.6 0.0001 2.2E-09 52.6 3.9 41 556-604 1-41 (44)
159 PF00004 AAA: ATPase family as 97.5 0.00031 6.7E-09 64.9 8.4 96 207-322 1-111 (132)
160 CHL00095 clpC Clp protease ATP 97.5 0.00081 1.8E-08 81.9 13.9 153 178-351 180-352 (821)
161 COG5238 RNA1 Ran GTPase-activa 97.5 1.4E-05 3E-10 78.5 -1.3 260 552-872 26-314 (388)
162 smart00382 AAA ATPases associa 97.5 0.00079 1.7E-08 63.0 10.9 88 205-296 3-91 (148)
163 KOG2120 SCF ubiquitin ligase, 97.5 4.7E-06 1E-10 82.8 -4.8 165 709-898 206-376 (419)
164 PRK10787 DNA-binding ATP-depen 97.4 0.0018 3.8E-08 77.7 14.5 166 176-353 321-506 (784)
165 PRK11034 clpA ATP-dependent Cl 97.4 0.0022 4.7E-08 76.3 14.3 154 178-352 187-361 (758)
166 PRK08058 DNA polymerase III su 97.4 0.0049 1.1E-07 66.6 15.9 149 178-352 6-181 (329)
167 COG1373 Predicted ATPase (AAA+ 97.4 0.003 6.5E-08 69.9 14.5 119 206-349 39-163 (398)
168 TIGR00763 lon ATP-dependent pr 97.3 0.0065 1.4E-07 73.7 17.8 165 176-352 319-504 (775)
169 PF13177 DNA_pol3_delta2: DNA 97.3 0.0043 9.3E-08 59.4 13.1 137 181-341 1-162 (162)
170 PTZ00361 26 proteosome regulat 97.3 0.0018 4E-08 71.7 11.9 156 178-353 184-367 (438)
171 TIGR03689 pup_AAA proteasome A 97.3 0.0043 9.3E-08 69.9 14.7 165 177-353 182-378 (512)
172 PRK06090 DNA polymerase III su 97.3 0.016 3.4E-07 61.6 18.2 166 184-386 10-201 (319)
173 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0031 6.7E-08 77.2 14.8 151 178-352 174-348 (852)
174 TIGR00602 rad24 checkpoint pro 97.3 0.0018 3.9E-08 74.9 11.9 51 176-227 83-133 (637)
175 KOG4579 Leucine-rich repeat (L 97.3 1.9E-05 4.1E-10 69.5 -3.2 83 553-644 50-133 (177)
176 PRK15386 type III secretion pr 97.3 0.00026 5.6E-09 76.3 4.7 86 527-631 48-135 (426)
177 PRK08769 DNA polymerase III su 97.3 0.011 2.3E-07 62.9 16.7 96 282-387 112-209 (319)
178 KOG3665 ZYG-1-like serine/thre 97.3 0.00015 3.2E-09 85.2 3.0 135 586-724 122-261 (699)
179 PRK12377 putative replication 97.2 0.00095 2.1E-08 68.2 7.9 102 204-322 101-205 (248)
180 PRK10865 protein disaggregatio 97.2 0.0047 1E-07 75.3 14.7 138 177-322 568-720 (857)
181 KOG0991 Replication factor C, 97.2 0.008 1.7E-07 58.2 12.9 44 177-226 27-70 (333)
182 PRK08181 transposase; Validate 97.2 0.0012 2.7E-08 68.2 8.2 101 205-323 107-209 (269)
183 PRK06871 DNA polymerase III su 97.2 0.019 4E-07 61.2 17.1 176 185-383 10-200 (325)
184 TIGR02640 gas_vesic_GvpN gas v 97.2 0.014 3.1E-07 60.9 16.1 139 206-352 23-197 (262)
185 TIGR02639 ClpA ATP-dependent C 97.1 0.0058 1.3E-07 73.7 14.9 123 177-310 454-580 (731)
186 KOG4579 Leucine-rich repeat (L 97.1 8.1E-05 1.8E-09 65.6 -0.9 81 532-621 54-134 (177)
187 PRK10865 protein disaggregatio 97.1 0.0033 7.2E-08 76.6 12.5 45 177-227 178-222 (857)
188 PRK08118 topology modulation p 97.1 0.00026 5.7E-09 68.1 2.5 34 206-239 3-37 (167)
189 PRK08939 primosomal protein Dn 97.1 0.0034 7.3E-08 66.6 10.8 122 181-322 135-260 (306)
190 PRK06921 hypothetical protein; 97.1 0.0031 6.8E-08 65.6 10.4 100 203-322 116-224 (266)
191 PTZ00454 26S protease regulato 97.1 0.0091 2E-07 65.8 14.5 157 177-353 145-329 (398)
192 PF04665 Pox_A32: Poxvirus A32 97.1 0.002 4.4E-08 64.7 8.5 38 203-242 12-49 (241)
193 PRK07952 DNA replication prote 97.1 0.0037 7.9E-08 63.7 10.4 103 204-322 99-204 (244)
194 COG0542 clpA ATP-binding subun 97.1 0.0024 5.1E-08 74.3 10.0 126 177-310 491-620 (786)
195 TIGR03346 chaperone_ClpB ATP-d 97.1 0.0038 8.1E-08 76.5 12.3 138 177-322 565-717 (852)
196 TIGR03345 VI_ClpV1 type VI sec 97.1 0.0026 5.6E-08 77.3 10.7 138 177-322 566-718 (852)
197 PF01695 IstB_IS21: IstB-like 97.0 0.001 2.2E-08 64.6 5.8 100 204-322 47-149 (178)
198 PRK06964 DNA polymerase III su 97.0 0.024 5.2E-07 60.8 16.6 93 282-386 131-225 (342)
199 PRK09183 transposase/IS protei 97.0 0.0036 7.9E-08 64.9 9.9 100 205-322 103-205 (259)
200 PF02562 PhoH: PhoH-like prote 97.0 0.00092 2E-08 65.6 5.1 132 181-324 4-157 (205)
201 PRK06526 transposase; Provisio 97.0 0.0017 3.7E-08 66.8 7.2 101 204-323 98-201 (254)
202 COG5238 RNA1 Ran GTPase-activa 97.0 0.00033 7E-09 69.2 1.7 251 523-806 22-314 (388)
203 KOG3665 ZYG-1-like serine/thre 97.0 0.00067 1.5E-08 79.7 4.4 108 528-645 145-261 (699)
204 COG2607 Predicted ATPase (AAA+ 96.9 0.0054 1.2E-07 59.9 9.7 120 174-322 57-182 (287)
205 CHL00176 ftsH cell division pr 96.9 0.018 3.8E-07 67.4 15.8 177 177-378 183-386 (638)
206 TIGR01241 FtsH_fam ATP-depende 96.9 0.019 4.1E-07 66.1 15.9 178 177-379 55-259 (495)
207 COG0466 Lon ATP-dependent Lon 96.9 0.0031 6.6E-08 71.4 8.9 164 175-353 321-508 (782)
208 PRK13531 regulatory ATPase Rav 96.9 0.0054 1.2E-07 67.8 10.6 152 178-352 21-193 (498)
209 PRK07993 DNA polymerase III su 96.8 0.034 7.4E-07 59.9 16.0 178 184-384 9-202 (334)
210 PRK04296 thymidine kinase; Pro 96.8 0.0033 7.2E-08 62.0 7.6 112 205-323 3-116 (190)
211 PHA00729 NTP-binding motif con 96.8 0.01 2.2E-07 59.0 10.9 25 203-227 16-40 (226)
212 KOG1859 Leucine-rich repeat pr 96.8 7.7E-05 1.7E-09 83.1 -4.5 21 524-544 102-122 (1096)
213 CHL00095 clpC Clp protease ATP 96.8 0.0063 1.4E-07 74.3 11.3 138 177-322 509-661 (821)
214 COG2884 FtsE Predicted ATPase 96.8 0.014 3.1E-07 55.1 10.8 125 203-330 27-204 (223)
215 smart00763 AAA_PrkA PrkA AAA d 96.8 0.0015 3.1E-08 69.5 4.9 51 177-227 51-101 (361)
216 PRK04132 replication factor C 96.8 0.039 8.4E-07 66.0 17.0 155 212-386 574-731 (846)
217 KOG1514 Origin recognition com 96.8 0.064 1.4E-06 60.9 17.4 204 176-386 395-621 (767)
218 PRK05541 adenylylsulfate kinas 96.8 0.0065 1.4E-07 59.3 9.0 36 203-240 6-41 (176)
219 KOG0741 AAA+-type ATPase [Post 96.7 0.045 9.7E-07 59.7 15.5 149 201-376 535-704 (744)
220 PRK07261 topology modulation p 96.7 0.0038 8.2E-08 60.4 7.1 65 206-293 2-67 (171)
221 PRK12608 transcription termina 96.7 0.0065 1.4E-07 65.0 9.2 102 184-292 118-229 (380)
222 COG0470 HolB ATPase involved i 96.7 0.012 2.5E-07 64.2 11.5 145 178-342 2-170 (325)
223 COG1875 NYN ribonuclease and A 96.7 0.0055 1.2E-07 63.7 8.0 136 180-324 227-389 (436)
224 PRK06835 DNA replication prote 96.7 0.0044 9.6E-08 66.3 7.8 102 205-322 184-288 (329)
225 PF00910 RNA_helicase: RNA hel 96.7 0.0032 6.9E-08 55.5 5.6 21 207-227 1-21 (107)
226 KOG1859 Leucine-rich repeat pr 96.7 0.00015 3.3E-09 80.8 -3.5 107 525-645 181-290 (1096)
227 cd03214 ABC_Iron-Siderophores_ 96.7 0.028 6.1E-07 55.0 12.7 120 204-326 25-161 (180)
228 PRK08699 DNA polymerase III su 96.7 0.042 9E-07 59.0 14.9 71 282-352 112-184 (325)
229 PRK11889 flhF flagellar biosyn 96.6 0.025 5.3E-07 60.8 12.7 104 203-309 240-348 (436)
230 COG2812 DnaX DNA polymerase II 96.6 0.0075 1.6E-07 67.5 9.4 188 178-381 17-215 (515)
231 KOG2004 Mitochondrial ATP-depe 96.6 0.01 2.2E-07 66.9 10.1 58 175-234 409-466 (906)
232 cd01120 RecA-like_NTPases RecA 96.6 0.015 3.3E-07 55.8 10.2 40 206-247 1-40 (165)
233 cd03228 ABCC_MRP_Like The MRP 96.6 0.019 4.1E-07 55.7 10.7 118 204-328 28-160 (171)
234 cd03247 ABCC_cytochrome_bd The 96.5 0.028 6.1E-07 54.9 11.8 118 204-327 28-161 (178)
235 KOG2228 Origin recognition com 96.5 0.034 7.5E-07 57.3 12.2 172 177-353 24-219 (408)
236 PF10443 RNA12: RNA12 protein; 96.5 0.15 3.3E-06 55.3 17.8 204 182-397 1-289 (431)
237 PRK13695 putative NTPase; Prov 96.5 0.0044 9.6E-08 60.3 5.7 22 206-227 2-23 (174)
238 COG1484 DnaC DNA replication p 96.5 0.0083 1.8E-07 61.9 8.0 82 203-301 104-185 (254)
239 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.5 0.035 7.6E-07 52.0 11.6 106 203-327 25-131 (144)
240 TIGR02902 spore_lonB ATP-depen 96.5 0.016 3.4E-07 66.9 11.0 43 178-226 66-108 (531)
241 cd03223 ABCD_peroxisomal_ALDP 96.5 0.041 8.9E-07 53.0 12.1 117 204-327 27-152 (166)
242 COG1223 Predicted ATPase (AAA+ 96.4 0.089 1.9E-06 52.2 14.0 156 177-353 121-297 (368)
243 TIGR02237 recomb_radB DNA repa 96.4 0.0086 1.9E-07 60.4 7.5 48 203-253 11-58 (209)
244 PF13207 AAA_17: AAA domain; P 96.4 0.0024 5.2E-08 57.9 3.2 22 206-227 1-22 (121)
245 PF07693 KAP_NTPase: KAP famil 96.4 0.16 3.6E-06 55.1 18.1 75 183-260 2-81 (325)
246 PF14532 Sigma54_activ_2: Sigm 96.4 0.0046 9.9E-08 57.5 5.0 108 180-323 1-110 (138)
247 cd01131 PilT Pilus retraction 96.4 0.0078 1.7E-07 59.8 6.9 112 205-328 2-114 (198)
248 PRK11034 clpA ATP-dependent Cl 96.4 0.02 4.3E-07 68.3 11.1 123 177-310 458-584 (758)
249 cd00544 CobU Adenosylcobinamid 96.4 0.02 4.3E-07 54.9 9.2 149 207-381 2-167 (169)
250 PF07728 AAA_5: AAA domain (dy 96.3 0.0019 4.1E-08 60.3 2.0 89 207-308 2-90 (139)
251 PF00158 Sigma54_activat: Sigm 96.3 0.014 2.9E-07 56.1 7.9 130 179-322 1-143 (168)
252 TIGR01243 CDC48 AAA family ATP 96.3 0.027 5.9E-07 68.2 12.4 178 178-380 179-381 (733)
253 cd03222 ABC_RNaseL_inhibitor T 96.3 0.041 8.9E-07 53.3 11.2 103 204-327 25-136 (177)
254 PRK05800 cobU adenosylcobinami 96.3 0.0095 2.1E-07 57.3 6.8 152 206-383 3-169 (170)
255 PRK09361 radB DNA repair and r 96.3 0.011 2.4E-07 60.3 7.6 46 203-251 22-67 (225)
256 PF00448 SRP54: SRP54-type pro 96.3 0.02 4.4E-07 56.5 8.9 88 204-293 1-93 (196)
257 TIGR03499 FlhF flagellar biosy 96.2 0.017 3.6E-07 60.9 8.7 86 203-292 193-281 (282)
258 KOG1644 U2-associated snRNP A' 96.2 0.0052 1.1E-07 58.5 4.2 105 714-840 43-149 (233)
259 PRK12724 flagellar biosynthesi 96.2 0.026 5.7E-07 61.4 10.1 24 203-226 222-245 (432)
260 COG1121 ZnuC ABC-type Mn/Zn tr 96.2 0.059 1.3E-06 54.5 11.9 123 205-327 31-203 (254)
261 KOG0744 AAA+-type ATPase [Post 96.2 0.084 1.8E-06 54.1 12.8 79 204-292 177-259 (423)
262 cd01393 recA_like RecA is a b 96.2 0.018 3.9E-07 58.9 8.6 87 203-292 18-123 (226)
263 cd03246 ABCC_Protease_Secretio 96.1 0.033 7.2E-07 54.1 9.7 117 204-327 28-160 (173)
264 cd03216 ABC_Carb_Monos_I This 96.1 0.031 6.6E-07 53.7 9.3 116 204-326 26-145 (163)
265 KOG1947 Leucine rich repeat pr 96.1 0.0012 2.7E-08 76.4 -0.5 83 705-806 287-373 (482)
266 KOG2739 Leucine-rich acidic nu 96.1 0.0022 4.7E-08 63.8 1.2 60 584-645 63-127 (260)
267 COG4608 AppF ABC-type oligopep 96.1 0.06 1.3E-06 54.5 11.4 126 203-331 38-178 (268)
268 PTZ00494 tuzin-like protein; P 96.1 0.87 1.9E-05 49.3 20.2 168 172-353 366-544 (664)
269 KOG0735 AAA+-type ATPase [Post 96.1 0.092 2E-06 59.5 13.7 162 203-386 430-616 (952)
270 PRK06696 uridine kinase; Valid 96.1 0.0071 1.5E-07 61.5 4.9 43 181-226 2-44 (223)
271 COG1136 SalX ABC-type antimicr 96.1 0.085 1.8E-06 52.5 12.1 62 269-330 146-210 (226)
272 cd03238 ABC_UvrA The excision 96.1 0.038 8.2E-07 53.5 9.6 122 204-337 21-161 (176)
273 cd00561 CobA_CobO_BtuR ATP:cor 96.0 0.042 9.2E-07 51.6 9.4 116 205-323 3-138 (159)
274 COG0396 sufC Cysteine desulfur 96.0 0.12 2.6E-06 50.7 12.6 65 270-334 149-215 (251)
275 KOG1969 DNA replication checkp 96.0 0.028 6.2E-07 63.7 9.5 89 202-308 324-412 (877)
276 TIGR01243 CDC48 AAA family ATP 96.0 0.16 3.5E-06 61.6 17.0 179 177-380 453-657 (733)
277 KOG1947 Leucine rich repeat pr 96.0 0.0011 2.4E-08 76.7 -1.5 167 712-904 268-445 (482)
278 cd01394 radB RadB. The archaea 96.0 0.019 4.2E-07 58.2 7.7 43 203-247 18-60 (218)
279 PRK15455 PrkA family serine pr 96.0 0.005 1.1E-07 68.9 3.4 49 178-226 77-125 (644)
280 COG4618 ArpD ABC-type protease 96.0 0.036 7.7E-07 60.5 9.5 55 275-329 482-538 (580)
281 PRK05703 flhF flagellar biosyn 96.0 0.078 1.7E-06 59.2 12.6 102 204-308 221-326 (424)
282 COG1222 RPT1 ATP-dependent 26S 95.9 0.2 4.4E-06 52.4 14.4 188 178-391 152-372 (406)
283 cd03230 ABC_DR_subfamily_A Thi 95.9 0.04 8.7E-07 53.5 9.0 118 204-327 26-159 (173)
284 cd01123 Rad51_DMC1_radA Rad51_ 95.9 0.038 8.2E-07 56.9 9.2 50 203-252 18-71 (235)
285 PF13671 AAA_33: AAA domain; P 95.9 0.043 9.3E-07 51.3 8.9 21 206-226 1-21 (143)
286 PF13604 AAA_30: AAA domain; P 95.8 0.025 5.4E-07 56.1 7.4 102 203-323 17-131 (196)
287 KOG0733 Nuclear AAA ATPase (VC 95.8 0.09 2E-06 58.6 12.0 97 177-293 190-292 (802)
288 cd01133 F1-ATPase_beta F1 ATP 95.8 0.061 1.3E-06 55.4 10.3 88 203-292 68-172 (274)
289 COG0542 clpA ATP-binding subun 95.8 0.029 6.4E-07 65.6 8.8 153 178-351 171-344 (786)
290 KOG1644 U2-associated snRNP A' 95.8 0.0076 1.7E-07 57.4 3.3 37 584-621 62-99 (233)
291 cd00983 recA RecA is a bacter 95.8 0.019 4E-07 60.9 6.6 83 203-292 54-142 (325)
292 COG0572 Udk Uridine kinase [Nu 95.8 0.017 3.7E-07 56.7 5.8 79 202-284 6-85 (218)
293 PRK14974 cell division protein 95.8 0.081 1.8E-06 56.7 11.3 102 203-307 139-248 (336)
294 cd03281 ABC_MSH5_euk MutS5 hom 95.8 0.097 2.1E-06 52.6 11.4 23 204-226 29-51 (213)
295 PF00485 PRK: Phosphoribulokin 95.7 0.032 7E-07 55.3 7.8 79 206-287 1-87 (194)
296 PTZ00301 uridine kinase; Provi 95.7 0.016 3.4E-07 57.9 5.4 24 203-226 2-25 (210)
297 CHL00195 ycf46 Ycf46; Provisio 95.7 0.18 3.9E-06 57.1 14.4 178 178-379 229-428 (489)
298 PRK13539 cytochrome c biogenes 95.7 0.089 1.9E-06 52.8 11.0 61 276-339 138-200 (207)
299 PRK12723 flagellar biosynthesi 95.7 0.087 1.9E-06 57.6 11.6 105 203-310 173-283 (388)
300 PF08423 Rad51: Rad51; InterP 95.7 0.04 8.6E-07 57.1 8.5 56 203-259 37-96 (256)
301 cd03229 ABC_Class3 This class 95.7 0.049 1.1E-06 53.2 8.8 121 204-327 26-165 (178)
302 COG1618 Predicted nucleotide k 95.7 0.01 2.2E-07 54.5 3.4 24 204-227 5-28 (179)
303 TIGR01817 nifA Nif-specific re 95.7 0.074 1.6E-06 62.0 11.7 134 175-322 194-340 (534)
304 KOG2035 Replication factor C, 95.7 0.2 4.3E-06 50.4 12.5 208 179-408 15-260 (351)
305 PRK05439 pantothenate kinase; 95.7 0.053 1.1E-06 57.2 9.3 80 201-284 83-166 (311)
306 PRK00771 signal recognition pa 95.6 0.16 3.5E-06 56.5 13.5 25 203-227 94-118 (437)
307 cd03369 ABCC_NFT1 Domain 2 of 95.6 0.21 4.5E-06 50.2 13.4 54 275-328 135-189 (207)
308 cd00267 ABC_ATPase ABC (ATP-bi 95.6 0.049 1.1E-06 52.0 8.3 116 205-328 26-145 (157)
309 PRK11608 pspF phage shock prot 95.6 0.049 1.1E-06 58.8 9.2 131 178-322 7-150 (326)
310 cd02025 PanK Pantothenate kina 95.6 0.038 8.1E-07 55.9 7.8 22 206-227 1-22 (220)
311 PRK08233 hypothetical protein; 95.6 0.037 8E-07 54.3 7.7 24 204-227 3-26 (182)
312 TIGR02858 spore_III_AA stage I 95.6 0.077 1.7E-06 55.1 10.1 129 185-327 97-233 (270)
313 TIGR01069 mutS2 MutS2 family p 95.6 0.03 6.5E-07 67.3 8.1 114 282-404 401-518 (771)
314 cd03115 SRP The signal recogni 95.6 0.095 2.1E-06 50.9 10.3 21 206-226 2-22 (173)
315 PRK12727 flagellar biosynthesi 95.5 0.054 1.2E-06 60.7 9.2 89 203-294 349-439 (559)
316 PHA02244 ATPase-like protein 95.5 0.074 1.6E-06 56.9 9.8 22 206-227 121-142 (383)
317 PRK14722 flhF flagellar biosyn 95.5 0.1 2.3E-06 56.5 11.1 90 203-294 136-226 (374)
318 PRK09270 nucleoside triphospha 95.5 0.053 1.1E-06 55.4 8.6 26 202-227 31-56 (229)
319 TIGR00554 panK_bact pantothena 95.5 0.052 1.1E-06 56.8 8.6 25 202-226 60-84 (290)
320 PRK07667 uridine kinase; Provi 95.5 0.018 3.8E-07 57.1 4.8 38 186-227 3-40 (193)
321 PRK15429 formate hydrogenlyase 95.5 0.073 1.6E-06 64.1 10.9 133 177-323 376-521 (686)
322 KOG2982 Uncharacterized conser 95.5 0.0051 1.1E-07 61.8 0.8 85 711-805 69-156 (418)
323 TIGR00959 ffh signal recogniti 95.4 0.23 5.1E-06 55.1 13.8 24 203-226 98-121 (428)
324 PRK12726 flagellar biosynthesi 95.4 0.13 2.7E-06 55.4 11.0 90 202-294 204-296 (407)
325 cd03244 ABCC_MRP_domain2 Domai 95.4 0.19 4.1E-06 51.1 12.3 53 276-328 150-203 (221)
326 PRK06067 flagellar accessory p 95.4 0.13 2.8E-06 52.9 11.1 86 203-293 24-130 (234)
327 TIGR02974 phageshock_pspF psp 95.4 0.061 1.3E-06 58.0 8.9 130 179-322 1-143 (329)
328 PF05659 RPW8: Arabidopsis bro 95.4 0.17 3.8E-06 46.8 10.6 78 3-84 8-86 (147)
329 TIGR01650 PD_CobS cobaltochela 95.4 0.4 8.6E-06 50.8 14.5 59 178-249 46-104 (327)
330 TIGR02012 tigrfam_recA protein 95.4 0.03 6.5E-07 59.3 6.3 83 203-292 54-142 (321)
331 KOG1051 Chaperone HSP104 and r 95.4 0.16 3.5E-06 60.5 12.8 122 178-310 563-687 (898)
332 cd01125 repA Hexameric Replica 95.3 0.2 4.3E-06 51.6 12.3 21 206-226 3-23 (239)
333 cd03215 ABC_Carb_Monos_II This 95.3 0.2 4.4E-06 49.0 11.7 53 275-327 114-168 (182)
334 KOG0924 mRNA splicing factor A 95.3 0.19 4.2E-06 56.5 12.2 131 203-339 370-529 (1042)
335 cd03213 ABCG_EPDR ABCG transpo 95.3 0.24 5.2E-06 49.1 12.2 119 203-324 34-172 (194)
336 PF13238 AAA_18: AAA domain; P 95.3 0.013 2.8E-07 53.7 2.9 21 207-227 1-21 (129)
337 cd03263 ABC_subfamily_A The AB 95.3 0.24 5.2E-06 50.3 12.5 53 276-328 144-197 (220)
338 KOG2123 Uncharacterized conser 95.3 0.0018 3.9E-08 64.3 -2.9 99 530-640 18-123 (388)
339 cd01122 GP4d_helicase GP4d_hel 95.2 0.24 5.2E-06 52.2 12.8 54 203-259 29-82 (271)
340 PLN00020 ribulose bisphosphate 95.2 0.039 8.4E-07 58.5 6.4 26 202-227 146-171 (413)
341 cd03282 ABC_MSH4_euk MutS4 hom 95.2 0.05 1.1E-06 54.1 7.0 121 203-330 28-158 (204)
342 COG1102 Cmk Cytidylate kinase 95.2 0.044 9.6E-07 50.4 5.8 44 206-262 2-45 (179)
343 PF07724 AAA_2: AAA domain (Cd 95.1 0.021 4.6E-07 55.0 4.0 91 204-309 3-105 (171)
344 cd03235 ABC_Metallic_Cations A 95.1 0.34 7.4E-06 48.9 13.0 24 204-227 25-48 (213)
345 cd03226 ABC_cobalt_CbiO_domain 95.1 0.24 5.1E-06 49.7 11.8 52 276-327 137-190 (205)
346 cd03217 ABC_FeS_Assembly ABC-t 95.1 0.18 4E-06 50.2 10.9 121 203-327 25-168 (200)
347 TIGR02238 recomb_DMC1 meiotic 95.1 0.057 1.2E-06 57.5 7.5 57 203-260 95-155 (313)
348 PRK09354 recA recombinase A; P 95.1 0.066 1.4E-06 57.3 7.9 83 203-292 59-147 (349)
349 PRK08533 flagellar accessory p 95.1 0.2 4.4E-06 51.0 11.1 49 203-255 23-71 (230)
350 COG0468 RecA RecA/RadA recombi 95.1 0.12 2.5E-06 53.6 9.3 89 202-292 58-150 (279)
351 TIGR01359 UMP_CMP_kin_fam UMP- 95.1 0.19 4.1E-06 49.3 10.6 21 206-226 1-21 (183)
352 TIGR03864 PQQ_ABC_ATP ABC tran 95.0 0.28 6.1E-06 50.4 12.3 61 275-337 142-205 (236)
353 PF00560 LRR_1: Leucine Rich R 95.0 0.011 2.4E-07 34.9 1.0 19 588-607 2-20 (22)
354 cd03232 ABC_PDR_domain2 The pl 95.0 0.23 5E-06 49.1 11.2 119 204-324 33-169 (192)
355 PRK00889 adenylylsulfate kinas 95.0 0.14 3.1E-06 49.8 9.5 25 203-227 3-27 (175)
356 PRK10867 signal recognition pa 95.0 0.099 2.1E-06 58.0 9.2 24 203-226 99-122 (433)
357 PRK04301 radA DNA repair and r 95.0 0.093 2E-06 56.6 8.9 56 203-259 101-160 (317)
358 cd03253 ABCC_ATM1_transporter 95.0 0.26 5.7E-06 50.6 11.9 61 275-337 147-208 (236)
359 TIGR00708 cobA cob(I)alamin ad 95.0 0.2 4.4E-06 47.7 9.9 117 204-323 5-140 (173)
360 cd03245 ABCC_bacteriocin_expor 95.0 0.25 5.4E-06 50.1 11.6 52 276-327 151-203 (220)
361 PRK13949 shikimate kinase; Pro 95.0 0.19 4.2E-06 48.4 10.0 22 206-227 3-24 (169)
362 cd03240 ABC_Rad50 The catalyti 94.9 0.19 4.1E-06 50.2 10.3 61 275-337 131-195 (204)
363 PF03969 AFG1_ATPase: AFG1-lik 94.9 0.058 1.3E-06 58.6 7.0 103 202-323 60-167 (362)
364 COG4133 CcmA ABC-type transpor 94.9 0.35 7.6E-06 46.0 11.1 53 271-323 136-190 (209)
365 PRK05480 uridine/cytidine kina 94.9 0.022 4.7E-07 57.4 3.6 25 203-227 5-29 (209)
366 PRK13538 cytochrome c biogenes 94.9 0.3 6.5E-06 48.9 11.7 54 276-329 140-195 (204)
367 KOG0731 AAA+-type ATPase conta 94.9 0.25 5.3E-06 57.7 12.2 180 178-382 312-520 (774)
368 cd02019 NK Nucleoside/nucleoti 94.9 0.019 4E-07 45.9 2.4 22 206-227 1-22 (69)
369 PLN03187 meiotic recombination 94.9 0.089 1.9E-06 56.5 8.2 57 203-260 125-185 (344)
370 PRK13540 cytochrome c biogenes 94.9 0.28 6E-06 48.9 11.4 54 275-328 137-192 (200)
371 cd03237 ABC_RNaseL_inhibitor_d 94.8 0.31 6.7E-06 50.3 11.9 125 204-328 25-181 (246)
372 cd03264 ABC_drug_resistance_li 94.8 0.27 5.8E-06 49.6 11.3 53 275-327 140-193 (211)
373 PRK05022 anaerobic nitric oxid 94.8 0.13 2.8E-06 59.5 10.0 134 176-323 186-332 (509)
374 PRK07132 DNA polymerase III su 94.8 0.76 1.7E-05 48.5 14.9 157 203-385 17-184 (299)
375 PRK10247 putative ABC transpor 94.8 0.35 7.7E-06 49.2 12.2 61 275-337 147-210 (225)
376 TIGR03740 galliderm_ABC gallid 94.8 0.31 6.7E-06 49.6 11.8 52 276-327 135-188 (223)
377 cd03283 ABC_MutS-like MutS-lik 94.8 0.25 5.5E-06 49.0 10.7 22 205-226 26-47 (199)
378 KOG0734 AAA+-type ATPase conta 94.8 0.095 2.1E-06 57.3 8.0 50 178-227 305-360 (752)
379 PF08298 AAA_PrkA: PrkA AAA do 94.8 0.033 7.2E-07 58.7 4.6 51 176-226 60-110 (358)
380 TIGR00235 udk uridine kinase. 94.8 0.024 5.1E-07 57.0 3.4 25 203-227 5-29 (207)
381 cd03252 ABCC_Hemolysin The ABC 94.8 0.57 1.2E-05 48.2 13.7 52 276-327 149-201 (237)
382 PRK11248 tauB taurine transpor 94.7 0.33 7.1E-06 50.5 12.0 53 276-328 139-194 (255)
383 TIGR03522 GldA_ABC_ATP gliding 94.7 0.33 7.2E-06 51.9 12.3 52 276-327 144-196 (301)
384 TIGR01277 thiQ thiamine ABC tr 94.7 0.38 8.3E-06 48.5 12.1 52 276-327 139-193 (213)
385 cd02027 APSK Adenosine 5'-phos 94.7 0.24 5.1E-06 46.7 9.8 22 206-227 1-22 (149)
386 PRK00409 recombination and DNA 94.7 0.063 1.4E-06 64.7 7.3 176 203-404 326-523 (782)
387 PRK06547 hypothetical protein; 94.7 0.042 9.2E-07 52.9 4.7 26 202-227 13-38 (172)
388 PF01583 APS_kinase: Adenylyls 94.7 0.039 8.4E-07 51.6 4.3 36 204-241 2-37 (156)
389 PRK09544 znuC high-affinity zi 94.6 0.34 7.5E-06 50.2 11.7 25 203-227 29-53 (251)
390 TIGR02239 recomb_RAD51 DNA rep 94.6 0.17 3.6E-06 54.2 9.5 56 203-259 95-154 (316)
391 COG0563 Adk Adenylate kinase a 94.6 0.1 2.2E-06 50.6 7.1 22 206-227 2-23 (178)
392 COG1120 FepC ABC-type cobalami 94.6 0.44 9.6E-06 48.6 11.8 24 203-226 27-50 (258)
393 KOG1532 GTPase XAB1, interacts 94.5 0.14 3.1E-06 51.1 7.9 27 201-227 16-42 (366)
394 PRK10733 hflB ATP-dependent me 94.5 0.37 8.1E-06 57.2 13.1 156 178-353 153-335 (644)
395 COG0488 Uup ATPase components 94.5 0.25 5.5E-06 56.4 11.1 65 272-339 446-511 (530)
396 cd03250 ABCC_MRP_domain1 Domai 94.5 0.82 1.8E-05 45.7 13.8 56 273-328 135-193 (204)
397 cd03258 ABC_MetN_methionine_tr 94.5 0.32 7E-06 49.8 11.2 53 275-327 150-205 (233)
398 TIGR01420 pilT_fam pilus retra 94.5 0.096 2.1E-06 57.0 7.5 113 204-327 122-234 (343)
399 PRK06731 flhF flagellar biosyn 94.5 0.36 7.8E-06 50.1 11.3 102 204-308 75-181 (270)
400 cd03251 ABCC_MsbA MsbA is an e 94.5 0.52 1.1E-05 48.3 12.6 61 275-337 148-209 (234)
401 COG1126 GlnQ ABC-type polar am 94.5 1 2.2E-05 44.1 13.2 25 203-227 27-51 (240)
402 TIGR00064 ftsY signal recognit 94.5 0.14 3.1E-06 53.5 8.3 89 203-294 71-165 (272)
403 COG2842 Uncharacterized ATPase 94.5 0.75 1.6E-05 47.3 13.1 124 177-313 72-195 (297)
404 cd03293 ABC_NrtD_SsuB_transpor 94.4 0.4 8.7E-06 48.6 11.5 24 204-227 30-53 (220)
405 COG1428 Deoxynucleoside kinase 94.4 0.027 5.8E-07 54.6 2.6 24 204-227 4-27 (216)
406 PF12061 DUF3542: Protein of u 94.4 0.074 1.6E-06 54.0 5.7 77 4-84 296-373 (402)
407 PRK06762 hypothetical protein; 94.4 0.031 6.8E-07 53.9 3.2 24 204-227 2-25 (166)
408 cd03268 ABC_BcrA_bacitracin_re 94.4 0.26 5.7E-06 49.5 10.0 53 276-328 137-191 (208)
409 smart00534 MUTSac ATPase domai 94.4 0.5 1.1E-05 46.4 11.7 21 206-226 1-21 (185)
410 PRK06002 fliI flagellum-specif 94.4 0.2 4.4E-06 55.4 9.7 87 203-292 164-263 (450)
411 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 94.4 0.39 8.4E-06 48.9 11.3 24 204-227 48-71 (224)
412 TIGR00390 hslU ATP-dependent p 94.4 0.1 2.2E-06 56.8 7.1 80 177-258 12-103 (441)
413 KOG0728 26S proteasome regulat 94.4 0.9 2E-05 44.9 12.8 151 179-353 148-331 (404)
414 PRK13543 cytochrome c biogenes 94.4 0.63 1.4E-05 47.0 12.7 24 204-227 37-60 (214)
415 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.4 0.75 1.6E-05 47.3 13.5 52 276-327 150-202 (238)
416 cd03231 ABC_CcmA_heme_exporter 94.4 0.39 8.5E-06 47.9 11.1 25 203-227 25-49 (201)
417 PRK13650 cbiO cobalt transport 94.3 0.3 6.5E-06 51.6 10.7 53 275-327 150-205 (279)
418 TIGR03881 KaiC_arch_4 KaiC dom 94.3 0.47 1E-05 48.5 11.8 41 203-245 19-59 (229)
419 PF03308 ArgK: ArgK protein; 94.3 0.08 1.7E-06 53.3 5.7 39 185-227 14-52 (266)
420 PRK10923 glnG nitrogen regulat 94.3 0.57 1.2E-05 53.8 13.8 46 178-227 139-184 (469)
421 cd03254 ABCC_Glucan_exporter_l 94.3 0.57 1.2E-05 47.8 12.4 54 275-328 149-203 (229)
422 TIGR03771 anch_rpt_ABC anchore 94.3 0.49 1.1E-05 48.1 11.7 53 275-327 123-177 (223)
423 TIGR02236 recomb_radA DNA repa 94.3 0.17 3.6E-06 54.5 8.7 56 203-259 94-153 (310)
424 PF12775 AAA_7: P-loop contain 94.2 0.044 9.6E-07 57.2 4.0 92 186-296 22-113 (272)
425 KOG0730 AAA+-type ATPase [Post 94.2 0.71 1.5E-05 52.4 13.4 55 178-234 435-496 (693)
426 PRK09580 sufC cysteine desulfu 94.2 0.57 1.2E-05 48.5 12.4 24 204-227 27-50 (248)
427 TIGR03877 thermo_KaiC_1 KaiC d 94.2 0.25 5.4E-06 50.7 9.6 48 203-254 20-67 (237)
428 PF00006 ATP-synt_ab: ATP synt 94.2 0.15 3.3E-06 50.9 7.5 84 205-292 16-114 (215)
429 PRK15177 Vi polysaccharide exp 94.2 0.67 1.4E-05 46.7 12.4 24 204-227 13-36 (213)
430 cd03233 ABC_PDR_domain1 The pl 94.2 0.5 1.1E-05 47.2 11.4 25 203-227 32-56 (202)
431 TIGR00150 HI0065_YjeE ATPase, 94.2 0.067 1.5E-06 48.6 4.5 40 184-227 6-45 (133)
432 PLN03186 DNA repair protein RA 94.2 0.26 5.6E-06 53.1 9.8 57 203-260 122-182 (342)
433 PRK10820 DNA-binding transcrip 94.2 0.16 3.5E-06 58.7 8.8 133 178-323 205-349 (520)
434 PRK03839 putative kinase; Prov 94.2 0.034 7.4E-07 54.5 2.9 22 206-227 2-23 (180)
435 PRK14269 phosphate ABC transpo 94.1 0.95 2.1E-05 46.8 13.8 54 274-327 151-205 (246)
436 PRK10875 recD exonuclease V su 94.1 0.29 6.4E-06 57.1 10.8 117 203-322 166-301 (615)
437 TIGR03411 urea_trans_UrtD urea 94.1 0.65 1.4E-05 47.9 12.5 54 275-328 153-207 (242)
438 cd01129 PulE-GspE PulE/GspE Th 94.1 0.19 4.2E-06 52.3 8.5 108 204-326 80-187 (264)
439 COG0464 SpoVK ATPases of the A 94.1 0.73 1.6E-05 53.3 14.2 133 202-354 274-424 (494)
440 cd03278 ABC_SMC_barmotin Barmo 94.1 0.27 5.8E-06 48.8 9.1 20 206-225 24-43 (197)
441 PRK13640 cbiO cobalt transport 94.1 0.26 5.5E-06 52.2 9.5 53 275-327 153-208 (282)
442 PRK13948 shikimate kinase; Pro 94.1 0.48 1E-05 46.1 10.6 25 203-227 9-33 (182)
443 PTZ00088 adenylate kinase 1; P 94.1 0.044 9.6E-07 55.5 3.6 22 206-227 8-29 (229)
444 PRK13647 cbiO cobalt transport 94.1 0.7 1.5E-05 48.6 12.7 53 275-327 148-202 (274)
445 COG2274 SunT ABC-type bacterio 94.1 0.37 8.1E-06 57.2 11.6 24 203-226 498-521 (709)
446 PF07726 AAA_3: ATPase family 94.1 0.049 1.1E-06 48.6 3.2 27 207-235 2-28 (131)
447 KOG2123 Uncharacterized conser 94.1 0.0036 7.7E-08 62.3 -4.2 101 555-666 18-125 (388)
448 PRK04040 adenylate kinase; Pro 94.0 0.044 9.5E-07 53.8 3.3 23 204-226 2-24 (188)
449 TIGR01360 aden_kin_iso1 adenyl 94.0 0.043 9.4E-07 54.1 3.4 24 203-226 2-25 (188)
450 cd03287 ABC_MSH3_euk MutS3 hom 94.0 0.61 1.3E-05 47.0 11.5 24 203-226 30-53 (222)
451 PRK15056 manganese/iron transp 94.0 0.57 1.2E-05 49.3 11.9 53 275-327 152-206 (272)
452 KOG0733 Nuclear AAA ATPase (VC 94.0 0.73 1.6E-05 51.7 12.7 154 204-379 545-717 (802)
453 cd03243 ABC_MutS_homologs The 94.0 0.57 1.2E-05 46.8 11.4 22 205-226 30-51 (202)
454 cd02028 UMPK_like Uridine mono 94.0 0.067 1.5E-06 52.1 4.6 22 206-227 1-22 (179)
455 PRK14723 flhF flagellar biosyn 94.0 0.32 7E-06 57.5 10.8 87 204-293 185-273 (767)
456 PRK14721 flhF flagellar biosyn 94.0 0.23 5.1E-06 54.7 9.2 24 203-226 190-213 (420)
457 cd03300 ABC_PotA_N PotA is an 94.0 0.43 9.3E-06 48.9 10.7 52 275-326 140-194 (232)
458 cd03285 ABC_MSH2_euk MutS2 hom 94.0 0.067 1.4E-06 54.1 4.6 24 203-226 29-52 (222)
459 cd03298 ABC_ThiQ_thiamine_tran 93.9 0.35 7.5E-06 48.7 9.8 52 276-327 139-193 (211)
460 COG1419 FlhF Flagellar GTP-bin 93.9 0.57 1.2E-05 50.6 11.5 105 203-310 202-310 (407)
461 PRK00279 adk adenylate kinase; 93.9 0.37 7.9E-06 48.7 9.9 21 206-226 2-22 (215)
462 PRK05201 hslU ATP-dependent pr 93.9 0.13 2.7E-06 56.1 6.7 81 177-259 15-107 (443)
463 PRK00625 shikimate kinase; Pro 93.9 0.04 8.7E-07 53.1 2.7 22 206-227 2-23 (173)
464 PRK10418 nikD nickel transport 93.9 0.87 1.9E-05 47.3 12.9 24 204-227 29-52 (254)
465 PRK10463 hydrogenase nickel in 93.8 0.24 5.1E-06 51.6 8.3 87 202-294 102-195 (290)
466 PRK13545 tagH teichoic acids e 93.8 0.88 1.9E-05 51.6 13.3 54 275-328 153-208 (549)
467 cd03248 ABCC_TAP TAP, the Tran 93.8 0.93 2E-05 46.2 12.8 60 276-337 161-221 (226)
468 TIGR03498 FliI_clade3 flagella 93.8 0.26 5.5E-06 54.5 9.0 86 203-292 139-239 (418)
469 cd02023 UMPK Uridine monophosp 93.8 0.038 8.1E-07 55.1 2.4 21 206-226 1-21 (198)
470 cd03236 ABC_RNaseL_inhibitor_d 93.8 0.66 1.4E-05 48.1 11.6 25 203-227 25-49 (255)
471 TIGR01192 chvA glucan exporter 93.8 0.54 1.2E-05 55.6 12.4 61 275-337 481-542 (585)
472 PF00154 RecA: recA bacterial 93.8 0.12 2.5E-06 54.7 6.0 83 203-292 52-140 (322)
473 PRK03846 adenylylsulfate kinas 93.8 0.14 3E-06 51.0 6.3 25 202-226 22-46 (198)
474 TIGR03375 type_I_sec_LssB type 93.8 0.71 1.5E-05 56.0 13.7 24 204-227 491-514 (694)
475 PF08433 KTI12: Chromatin asso 93.7 0.19 4E-06 52.3 7.4 23 205-227 2-24 (270)
476 COG4240 Predicted kinase [Gene 93.7 0.24 5.3E-06 48.2 7.5 83 202-285 48-135 (300)
477 COG1703 ArgK Putative periplas 93.7 0.09 2E-06 53.7 4.8 62 187-252 38-99 (323)
478 COG4586 ABC-type uncharacteriz 93.7 0.99 2.1E-05 45.7 11.9 81 271-351 162-246 (325)
479 PRK09280 F0F1 ATP synthase sub 93.7 0.29 6.3E-06 54.4 9.2 89 203-292 143-247 (463)
480 PF00560 LRR_1: Leucine Rich R 93.7 0.028 6.1E-07 33.1 0.8 21 611-632 1-21 (22)
481 KOG0739 AAA+-type ATPase [Post 93.7 2 4.4E-05 43.8 14.0 175 178-378 134-333 (439)
482 cd02024 NRK1 Nicotinamide ribo 93.7 0.041 8.9E-07 53.6 2.3 22 206-227 1-22 (187)
483 TIGR02329 propionate_PrpR prop 93.7 0.22 4.8E-06 57.1 8.5 130 178-322 213-357 (526)
484 cd03289 ABCC_CFTR2 The CFTR su 93.6 0.74 1.6E-05 48.3 11.8 52 276-327 149-201 (275)
485 PRK11176 lipid transporter ATP 93.6 0.57 1.2E-05 55.6 12.4 24 204-227 369-392 (582)
486 TIGR03574 selen_PSTK L-seryl-t 93.6 0.44 9.6E-06 49.4 10.2 21 207-227 2-22 (249)
487 PRK08972 fliI flagellum-specif 93.6 0.21 4.6E-06 55.0 7.9 85 204-292 162-261 (444)
488 COG1131 CcmA ABC-type multidru 93.6 0.83 1.8E-05 48.4 12.2 24 204-227 31-54 (293)
489 TIGR02788 VirB11 P-type DNA tr 93.6 0.18 3.9E-06 54.0 7.2 114 203-326 143-256 (308)
490 PRK06995 flhF flagellar biosyn 93.5 0.4 8.7E-06 53.9 10.1 24 204-227 256-279 (484)
491 TIGR02322 phosphon_PhnN phosph 93.5 0.053 1.2E-06 53.0 2.9 23 205-227 2-24 (179)
492 PRK05917 DNA polymerase III su 93.5 2.2 4.8E-05 44.6 14.8 129 186-340 6-154 (290)
493 PRK10751 molybdopterin-guanine 93.5 0.075 1.6E-06 50.8 3.8 25 203-227 5-29 (173)
494 PRK13642 cbiO cobalt transport 93.4 0.51 1.1E-05 49.8 10.4 53 276-328 151-206 (277)
495 PRK15064 ABC transporter ATP-b 93.4 0.83 1.8E-05 53.4 13.1 52 275-328 165-217 (530)
496 TIGR01188 drrA daunorubicin re 93.4 0.44 9.6E-06 51.0 10.0 54 275-328 134-189 (302)
497 COG4088 Predicted nucleotide k 93.4 0.22 4.7E-06 47.9 6.5 22 205-226 2-23 (261)
498 PRK05986 cob(I)alamin adenolsy 93.4 0.37 7.9E-06 46.7 8.3 119 203-323 21-158 (191)
499 cd01121 Sms Sms (bacterial rad 93.4 0.21 4.5E-06 54.6 7.5 40 203-244 81-120 (372)
500 TIGR02868 CydC thiol reductant 93.4 0.73 1.6E-05 53.9 12.7 25 203-227 360-384 (529)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-83 Score=750.34 Aligned_cols=749 Identities=26% Similarity=0.369 Sum_probs=540.6
Q ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhHhhhhhhHH
Q 039167 2 VDAIISPLLQQLTTMAAEETKEQVRLVTGVGKEVKKLSRNLQAIQAVLHDVEKRQVKEESVRLWLDQLRDVSYNMEDVLE 81 (923)
Q Consensus 2 a~~~v~~v~~~l~~~~~~~~~~e~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~lr~~~~d~ed~ld 81 (923)
|++.++..++++.. .+.+++..+.+.++.+..|++.+..++.+++|++.++.....+..|.+.+++++|++||+++
T Consensus 1 ~~~~~s~~~~~~~~----~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~ 76 (889)
T KOG4658|consen 1 MGACVSFGVEKLDQ----LLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIW 76 (889)
T ss_pred CCeEEEEehhhHHH----HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777887 78889999999999999999999999999999999988888999999999999999999999
Q ss_pred HHHHHHHHhhhccCCcccccccCcCcccccccCccccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhcCccccccccc
Q 039167 82 EWSTARLKLKIDGVDDHENAALDPNKKVCSFFPAASCFGCKRLFLRRDIALKLKEINESLDDIAKQKDQFGFAVNVIKSN 161 (923)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~l~~i~~~~~~~~~~~~~~~~~ 161 (923)
.|.......+..+ ....+....+.. |++ .++++.+..+..+..++..+.+....++.+.......
T Consensus 77 ~~~v~~~~~~~~~-------~l~~~~~~~~~~----c~~----~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~ 141 (889)
T KOG4658|consen 77 LFLVEEIERKAND-------LLSTRSVERQRL----CLC----GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVG 141 (889)
T ss_pred HHHHHHHHHHHhH-------HhhhhHHHHHHH----hhh----hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceeccc
Confidence 9998876554322 000000011111 111 4556667777777777777777777776544322111
Q ss_pred --cccccCCCCCccCCCCceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcc-cccccceEE
Q 039167 162 --ERAYERIPSVSSIDESEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGD-VEKNFEKRI 238 (923)
Q Consensus 162 --~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~ 238 (923)
..+...+++.+.....+ ||.++.++++++.|..+ +..+++|+||||+||||||+.++|+.. ++.+||.++
T Consensus 142 ~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d------~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~i 214 (889)
T KOG4658|consen 142 ESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMED------DVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVI 214 (889)
T ss_pred ccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccC------CCCEEEEECCCcccHHHHHHHHhcccchhcccCceEE
Confidence 11112233444444445 99999999999999865 338999999999999999999999987 999999999
Q ss_pred EEEeCCcccHHHHHHHHHHHHhCCCCCCc--CHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEE
Q 039167 239 WVCVSDPFDEFRIARAIIEALTGCLPNFV--EFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKI 316 (923)
Q Consensus 239 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~--~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 316 (923)
||.||+.++...++.+|++.++....... ..++++..|.+.|++|||+|||||||+. .+|+.+..++|...+||||
T Consensus 215 WV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~Kv 292 (889)
T KOG4658|consen 215 WVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKV 292 (889)
T ss_pred EEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEE
Confidence 99999999999999999999987544333 3468889999999999999999999987 5699999999999889999
Q ss_pred EEEecchHHHHH-hcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHHHHHccCCC
Q 039167 317 LITTRKEAVARI-MGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTIASLLRSKNT 395 (923)
Q Consensus 317 ivTtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~ 395 (923)
++|||++.|+.. +++...++++.|++++||.||++.||.... ..++.++++|++|+++|+|+|||++++|+.|+.+.+
T Consensus 293 vlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t 371 (889)
T KOG4658|consen 293 VLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKT 371 (889)
T ss_pred EEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCc
Confidence 999999999998 788899999999999999999999987643 334559999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhh----hhhhhhhhhhHHHhhcccCChhhHHHHhhhccCCCCcccChHHHHHHHHhcc-------CCC
Q 039167 396 EKEWQNILKSEIWE----IEQVEKNLLAPLLLSYNELPSKVKQCFTYCAVFPKDVILKKDKLIELWMAQE-------TKE 464 (923)
Q Consensus 396 ~~~w~~~l~~~~~~----~~~~~~~~~~~l~~sy~~L~~~~k~~fl~~s~fp~~~~i~~~~Li~~W~ae~-------~~~ 464 (923)
..+|+++.+...+. .++..+.++++|++||+.||+++|.||+|||+||+||.|+++.||.+|+||+ ..+
T Consensus 372 ~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~ 451 (889)
T KOG4658|consen 372 VQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGET 451 (889)
T ss_pred HHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccc
Confidence 99999999865444 2344678999999999999999999999999999999999999999999995 367
Q ss_pred HHHHHHHHHHHHHhcccccccCCc---eEeecCC--------------------cccc------ccccccccceEEEEEE
Q 039167 465 MEEIGEEYFNVLASRSFFQEFGRG---YDVELHS--------------------GEEL------AMSSFAEKKILHLTLA 515 (923)
Q Consensus 465 ~e~~~~~~~~~Lv~r~l~q~~~~~---~~~~~~~--------------------~~~~------~~~~~~~~~~~~l~l~ 515 (923)
+++.|++|+.+|+++++++..+.. ..+.+|+ .... .........+|++++.
T Consensus 452 ~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~ 531 (889)
T KOG4658|consen 452 AEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLM 531 (889)
T ss_pred hhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEe
Confidence 899999999999999999987631 1111111 0000 1112223467888888
Q ss_pred ecCCCCCccccccccCCceEEEeCCCCC-CCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEecc
Q 039167 516 IGCGPMPIYDNIEALRGLRSLLLESTKH-SSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLA 594 (923)
Q Consensus 516 ~~~~~~~~~~~~~~~~~Lr~L~l~~~~~-~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~ 594 (923)
.+.... ...-..+++|++|.+.+|.. .......+|..++.||+|||++|. .+.++|++|++|.+||||+|+
T Consensus 532 ~~~~~~--~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~------~l~~LP~~I~~Li~LryL~L~ 603 (889)
T KOG4658|consen 532 NNKIEH--IAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS------SLSKLPSSIGELVHLRYLDLS 603 (889)
T ss_pred ccchhh--ccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC------ccCcCChHHhhhhhhhccccc
Confidence 776532 12223455799999988862 122335668889999999999865 688999999999999999999
Q ss_pred CCCCccccchhhhCCCCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEecccCCc
Q 039167 595 NQMEIERLPETLCELYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVGGGYGR 674 (923)
Q Consensus 595 ~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~ 674 (923)
++. +..+|..+++|+.|.+||+..+..+..+|..+..|.+||+|.+.... ...-...++.+.+|++|..+......
T Consensus 604 ~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s-- 679 (889)
T KOG4658|consen 604 DTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITISS-- 679 (889)
T ss_pred CCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecch--
Confidence 998 99999999999999999999988777777767779999999886552 11112224445555555554443332
Q ss_pred ccccccccCCCCCCCceEeCC-CCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEE
Q 039167 675 ACSLGSLKKLNLLRDCRIRGL-GDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWI 753 (923)
Q Consensus 675 ~~~l~~L~~L~~L~~l~i~~~-~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l 753 (923)
...+..+..+..|+.+.+.-. .. .........+..+.+|++|.+..+................. .++++.++.+
T Consensus 680 ~~~~e~l~~~~~L~~~~~~l~~~~--~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~---~f~~l~~~~~ 754 (889)
T KOG4658|consen 680 VLLLEDLLGMTRLRSLLQSLSIEG--CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLL---CFPNLSKVSI 754 (889)
T ss_pred hHhHhhhhhhHHHHHHhHhhhhcc--cccceeecccccccCcceEEEEcCCCchhhcccccccchhh---hHHHHHHHHh
Confidence 111222333333332111100 00 01122234455666777777766653211000000000000 1334444555
Q ss_pred eeecCCCCCcCcccccccccccEEeEeCCCCCCCC-CCCCCCCCccc
Q 039167 754 NKYRGKRNVVPKNWIMSLTNLRFLGLHEWRNCEHL-PPLGKLPSLES 799 (923)
Q Consensus 754 ~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l-~~l~~L~~L~~ 799 (923)
.++.+.. . +.|....++|+.|.+..|...+.+ |....+..++.
T Consensus 755 ~~~~~~r--~-l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~ 798 (889)
T KOG4658|consen 755 LNCHMLR--D-LTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKE 798 (889)
T ss_pred hcccccc--c-cchhhccCcccEEEEecccccccCCCHHHHhhhccc
Confidence 4544444 3 455555666777777666554443 22444444443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.3e-60 Score=588.93 Aligned_cols=653 Identities=21% Similarity=0.278 Sum_probs=452.5
Q ss_pred CCCCceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEe---CCc-----
Q 039167 174 IDESEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCV---SDP----- 245 (923)
Q Consensus 174 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~---s~~----- 245 (923)
.+.+++|||++.++++..+|... ..++++|+|+||||+||||||+++|+ ++..+|+..+|+.. +..
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~----~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~ 254 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLE----SEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYS 254 (1153)
T ss_pred cccccccchHHHHHHHHHHHccc----cCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcc
Confidence 34567999999999999988543 34789999999999999999999999 57889999888742 111
Q ss_pred ------cc-HHHHHHHHHHHHhCCCC-CCcCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEE
Q 039167 246 ------FD-EFRIARAIIEALTGCLP-NFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKIL 317 (923)
Q Consensus 246 ------~~-~~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 317 (923)
++ ...+++.++.++..... .... ...+++.+++||+||||||||+. ..|+.+.....+.++||+||
T Consensus 255 ~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrII 328 (1153)
T PLN03210 255 SANPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRII 328 (1153)
T ss_pred cccccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEE
Confidence 01 12344555555443211 1111 24577889999999999999864 67888887777778899999
Q ss_pred EEecchHHHHHhcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHHHHHccCCCHH
Q 039167 318 ITTRKEAVARIMGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTIASLLRSKNTEK 397 (923)
Q Consensus 318 vTtR~~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~ 397 (923)
||||+++++..++..++|+++.|++++||+||+.+||+... .++++.+++++|+++|+|+|||++++|++|+++ +..
T Consensus 329 iTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~ 405 (1153)
T PLN03210 329 VITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKE 405 (1153)
T ss_pred EEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHH
Confidence 99999999988778889999999999999999999997643 345788999999999999999999999999987 689
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhHHHhhcccCCh-hhHHHHhhhccCCCCcccChHHHHHHHHhccCCCHHHHHHHHHHHH
Q 039167 398 EWQNILKSEIWEIEQVEKNLLAPLLLSYNELPS-KVKQCFTYCAVFPKDVILKKDKLIELWMAQETKEMEEIGEEYFNVL 476 (923)
Q Consensus 398 ~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~-~~k~~fl~~s~fp~~~~i~~~~Li~~W~ae~~~~~e~~~~~~~~~L 476 (923)
+|..++++.... .+..+.++|++||+.|++ ..|.||+++|+||.+..+ ..+..|++......+ .-++.|
T Consensus 406 ~W~~~l~~L~~~---~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~~----~~l~~L 475 (1153)
T PLN03210 406 DWMDMLPRLRNG---LDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDVN----IGLKNL 475 (1153)
T ss_pred HHHHHHHHHHhC---ccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCch----hChHHH
Confidence 999999875432 235799999999999987 599999999999998654 347778887543222 237778
Q ss_pred HhcccccccCCceEeecCCc----------------------------cccccccccccceEEEEEEecCCCC--Ccccc
Q 039167 477 ASRSFFQEFGRGYDVELHSG----------------------------EELAMSSFAEKKILHLTLAIGCGPM--PIYDN 526 (923)
Q Consensus 477 v~r~l~q~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~l~l~~~~~~~--~~~~~ 526 (923)
+++++++.....+ ++|.. .+.-........++.+++....... .....
T Consensus 476 ~~ksLi~~~~~~~--~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~a 553 (1153)
T PLN03210 476 VDKSLIHVREDIV--EMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENA 553 (1153)
T ss_pred HhcCCEEEcCCeE--EhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHH
Confidence 8888887644321 11110 0000011123355666655443211 12334
Q ss_pred ccccCCceEEEeCCCCCC-----CccchHHhhc-----------------------CCcccEEeccccCCcccccccccc
Q 039167 527 IEALRGLRSLLLESTKHS-----SVILPQLFDK-----------------------LTCLRALKLEVHNERLPEDFIKEV 578 (923)
Q Consensus 527 ~~~~~~Lr~L~l~~~~~~-----~~~l~~~~~~-----------------------~~~Lr~L~L~~~~~~~~~~~~~~l 578 (923)
+..+++|+.|.+..+... ...+|..|.. +.+|+.|++.+| .+..+
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s-------~l~~L 626 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGS-------KLEKL 626 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCc-------ccccc
Confidence 666777777766543210 0112222222 345555555533 36677
Q ss_pred cccccCCCCCcEEeccCCCCccccchhhhCCCCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCcCCCCCC
Q 039167 579 PTNIEKLLHLKYLNLANQMEIERLPETLCELYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLI 658 (923)
Q Consensus 579 p~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~ 658 (923)
|..+..+++|++|+|+++..+..+|. ++.+++|++|+|++|..+..+|..+++|++|++|++++|..+..+|.++ +++
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~ 704 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK 704 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence 77777788888888887766777775 7778888888888887778888888888888888888887777788766 677
Q ss_pred CCCcCCceEecccCCcccccccccCCCCCCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHH
Q 039167 659 RLRRVKEFVVGGGYGRACSLGSLKKLNLLRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERL 738 (923)
Q Consensus 659 ~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 738 (923)
+|+.|.+..+......+. ...+|+.+.+.... +. .++.. ..+++|..|.+..+.......... ...
T Consensus 705 sL~~L~Lsgc~~L~~~p~------~~~nL~~L~L~~n~-i~----~lP~~-~~l~~L~~L~l~~~~~~~l~~~~~--~l~ 770 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPD------ISTNISWLDLDETA-IE----EFPSN-LRLENLDELILCEMKSEKLWERVQ--PLT 770 (1153)
T ss_pred CCCEEeCCCCCCcccccc------ccCCcCeeecCCCc-cc----ccccc-ccccccccccccccchhhcccccc--ccc
Confidence 777776654432211111 12234444443321 11 01111 135667777766533110000000 000
Q ss_pred hhcCCCCCCCCcEEEeeecCCCCCcCcccccccccccEEeEeCCCCCCCCCCCCCCCCccceeccCCcCceEeCccccCC
Q 039167 739 LEALGPPPNLKELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRNCEHLPPLGKLPSLESLYIAGMKSVKRVGNEFLGV 818 (923)
Q Consensus 739 l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~~~~~~~ 818 (923)
......+++|+.|++++|..... + |.+++++++|+.|+|++|..++.+|....+++|+.|++++|..+..++.
T Consensus 771 ~~~~~~~~sL~~L~Ls~n~~l~~-l-P~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~----- 843 (1153)
T PLN03210 771 PLMTMLSPSLTRLFLSDIPSLVE-L-PSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD----- 843 (1153)
T ss_pred hhhhhccccchheeCCCCCCccc-c-ChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc-----
Confidence 01122357899999998864441 5 7788899999999999998888888866899999999999987655442
Q ss_pred CCCCCCcccccCcccceeeccccccccccccccccccccccCcccceeeecccccCCCCCcCCCCCCCccEEEeccCCch
Q 039167 819 ESDMDGSSVIAFAKLKKLTFYIMEELEEWDLGTAIKGEIIIMPRLSSLTIWSCRKLKALPDHLLQKSTLQKLEIWGGCHI 898 (923)
Q Consensus 819 ~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~~c~~ 898 (923)
..++|+.|.+.++ .++ .+|..+..+++|+.|++++|+++..+|..+..+++|+.+++ ++|+.
T Consensus 844 ----------~~~nL~~L~Ls~n-~i~------~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l-~~C~~ 905 (1153)
T PLN03210 844 ----------ISTNISDLNLSRT-GIE------EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDF-SDCGA 905 (1153)
T ss_pred ----------cccccCEeECCCC-CCc------cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeec-CCCcc
Confidence 2456777776643 232 34666778999999999999999999988888999999999 89998
Q ss_pred hhh
Q 039167 899 LQE 901 (923)
Q Consensus 899 l~~ 901 (923)
|+.
T Consensus 906 L~~ 908 (1153)
T PLN03210 906 LTE 908 (1153)
T ss_pred ccc
Confidence 864
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.1e-42 Score=372.12 Aligned_cols=273 Identities=35% Similarity=0.601 Sum_probs=223.5
Q ss_pred chhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhC
Q 039167 182 RKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTG 261 (923)
Q Consensus 182 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 261 (923)
||.++++|.+.|.... .+.++|+|+||||+||||||++++++..++.+|+.++|+.+++..+...++..|+.+++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998743 489999999999999999999999977789999999999999999999999999999987
Q ss_pred CCC---CCcCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecchHHHHHhcc-cceEeC
Q 039167 262 CLP---NFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRKEAVARIMGS-TNIISV 337 (923)
Q Consensus 262 ~~~---~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~-~~~~~l 337 (923)
... ...+.+.....+.+.++++++||||||||+. ..|+.+...++....|++||||||+..++..++. ...|++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 643 4467788999999999999999999999875 5898888888887789999999999998877655 679999
Q ss_pred CCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHHHHHccCCCHHHHHHHHhhhhhhhhh---hh
Q 039167 338 NVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTIASLLRSKNTEKEWQNILKSEIWEIEQ---VE 414 (923)
Q Consensus 338 ~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~---~~ 414 (923)
++|+.++|++||.+.++... ...++.+.+++++|+++|+|+||||+++|++|+.+.+..+|.+++++....... ..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999987655 223345567799999999999999999999997766778899988765444422 34
Q ss_pred hhhhhHHHhhcccCChhhHHHHhhhccCCCCcccChHHHHHHHHhcc
Q 039167 415 KNLLAPLLLSYNELPSKVKQCFTYCAVFPKDVILKKDKLIELWMAQE 461 (923)
Q Consensus 415 ~~~~~~l~~sy~~L~~~~k~~fl~~s~fp~~~~i~~~~Li~~W~ae~ 461 (923)
..+..++.+||+.||+++|.||+|||+||+++.|+++.|+++|++|+
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~ 280 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEG 280 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-H
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCC
Confidence 77999999999999999999999999999999999999999999984
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=3.6e-24 Score=268.37 Aligned_cols=282 Identities=20% Similarity=0.220 Sum_probs=172.5
Q ss_pred ceEEEEEEecCCCCCccccccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCc---------------ccc
Q 039167 508 KILHLTLAIGCGPMPIYDNIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNER---------------LPE 572 (923)
Q Consensus 508 ~~~~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~---------------~~~ 572 (923)
.++.+.+..+.........+..+++|++|++++|.+....+...+..+++|++|+|++|... +.+
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~ 149 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSN 149 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcC
Confidence 45666665554333334456667777777777776543333343446666777776665410 001
Q ss_pred ccc-ccccccccCCCCCcEEeccCCCCccccchhhhCCCCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCC
Q 039167 573 DFI-KEVPTNIEKLLHLKYLNLANQMEIERLPETLCELYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLP 651 (923)
Q Consensus 573 ~~~-~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p 651 (923)
..+ ..+|..++++.+|++|+|++|.....+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|
T Consensus 150 n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 229 (968)
T PLN00113 150 NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP 229 (968)
T ss_pred CcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCC
Confidence 112 2456667777777777777776445667777777777777777776445667777777777777777765555667
Q ss_pred cCCCCCCCCCcCCceEecccCCcccccccccCCCCCCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCc
Q 039167 652 VGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLNLLRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENE 731 (923)
Q Consensus 652 ~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 731 (923)
..++++++|++|++..+......+.. +..+++|+.+.+....-. ...+..+..+++|+.|++++|.+..
T Consensus 230 ~~l~~l~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~Ls~n~l~~---- 298 (968)
T PLN00113 230 YEIGGLTSLNHLDLVYNNLTGPIPSS---LGNLKNLQYLFLYQNKLS----GPIPPSIFSLQKLISLDLSDNSLSG---- 298 (968)
T ss_pred hhHhcCCCCCEEECcCceeccccChh---HhCCCCCCEEECcCCeee----ccCchhHhhccCcCEEECcCCeecc----
Confidence 77777777777766655443222222 333444444444332110 1122345566777777777765421
Q ss_pred cchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCcccccccccccEEeEeCCCCCCCCCC-CCCCCCccceeccCCcC
Q 039167 732 EDEDERLLEALGPPPNLKELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRNCEHLPP-LGKLPSLESLYIAGMKS 807 (923)
Q Consensus 732 ~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~~ 807 (923)
.++..+..+++|+.|++.+|.... ..|.++..+++|+.|+|++|.....+|. ++.+++|+.|++++|..
T Consensus 299 -----~~p~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 299 -----EIPELVIQLQNLEILHLFSNNFTG--KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368 (968)
T ss_pred -----CCChhHcCCCCCcEEECCCCccCC--cCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCee
Confidence 234455667788888888777654 3366777888888888888876666665 77888888888887763
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=1.1e-23 Score=264.04 Aligned_cols=368 Identities=20% Similarity=0.185 Sum_probs=200.5
Q ss_pred ceEEEEEEecCCCCCccccccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCC
Q 039167 508 KILHLTLAIGCGPMPIYDNIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLH 587 (923)
Q Consensus 508 ~~~~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~ 587 (923)
.++.+.+..+......+..+.++++|++|++++|.+... +|..+.++++|++|+|++|. ....+|..++++++
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~------l~~~~p~~l~~l~~ 237 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ-IPRELGQMKSLKWIYLGYNN------LSGEIPYEIGGLTS 237 (968)
T ss_pred CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCc-CChHHcCcCCccEEECcCCc------cCCcCChhHhcCCC
Confidence 445555554443223344455566666666666654332 34445666666666666544 12345555666666
Q ss_pred CcEEeccCCCCccccchhhhCCCCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceE
Q 039167 588 LKYLNLANQMEIERLPETLCELYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFV 667 (923)
Q Consensus 588 L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~ 667 (923)
|++|++++|.....+|..++++++|++|++++|.....+|..+.++++|++|++++|.....+|..++++++|+.|++..
T Consensus 238 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~ 317 (968)
T PLN00113 238 LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFS 317 (968)
T ss_pred CCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCC
Confidence 66666666653335566666666666666666653345566666666666666666644445555566666666665544
Q ss_pred ecccCCcccccccccCCCCCCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCcc---------------
Q 039167 668 VGGGYGRACSLGSLKKLNLLRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEE--------------- 732 (923)
Q Consensus 668 ~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--------------- 732 (923)
+......+. .+..+++|+.+.+....-. ...+..+..+.+|+.|++++|.+.......
T Consensus 318 n~~~~~~~~---~~~~l~~L~~L~L~~n~l~----~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n 390 (968)
T PLN00113 318 NNFTGKIPV---ALTSLPRLQVLQLWSNKFS----GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN 390 (968)
T ss_pred CccCCcCCh---hHhcCCCCCEEECcCCCCc----CcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCC
Confidence 433321111 2233334444444332111 111233444555666666555432100000
Q ss_pred chHHHHhhcCCCCCCCCcEEEeeecCCCCCcCcccccccccccEEeEeCCCCCCCCCC-CCCCCCccceeccCCcCceEe
Q 039167 733 DEDERLLEALGPPPNLKELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRNCEHLPP-LGKLPSLESLYIAGMKSVKRV 811 (923)
Q Consensus 733 ~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~~l~~~ 811 (923)
......+..+..+++|+.|++.+|.... ..|..+..+++|+.|++++|.....++. +..+++|+.|++++|.....+
T Consensus 391 ~l~~~~p~~~~~~~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 468 (968)
T PLN00113 391 SLEGEIPKSLGACRSLRRVRLQDNSFSG--ELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGL 468 (968)
T ss_pred EecccCCHHHhCCCCCCEEECcCCEeee--ECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeec
Confidence 0001223344556677777777766554 2255666777777777777765555544 566778888888877643333
Q ss_pred CccccC--------CCCCCCCcccccC---cccceeeccccccccccccccccccccccCcccceeeecccccCCCCCcC
Q 039167 812 GNEFLG--------VESDMDGSSVIAF---AKLKKLTFYIMEELEEWDLGTAIKGEIIIMPRLSSLTIWSCRKLKALPDH 880 (923)
Q Consensus 812 ~~~~~~--------~~~~~~~~~~~~f---~~L~~L~l~~~~~L~~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~ 880 (923)
+..+.. ..+.+....+..| ++|+.|. +..+.+.+.+|..+..+++|+.|+|++|.....+|..
T Consensus 469 p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~------Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 542 (968)
T PLN00113 469 PDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLK------LSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS 542 (968)
T ss_pred CcccccccceEEECcCCccCCccChhhhhhhccCEEE------CcCCcceeeCChHHcCccCCCEEECCCCcccccCChh
Confidence 321110 0111112222223 3334433 3344555566777888899999999999877788888
Q ss_pred CCCCCCccEEEeccCCch
Q 039167 881 LLQKSTLQKLEIWGGCHI 898 (923)
Q Consensus 881 l~~l~sL~~L~l~~~c~~ 898 (923)
+.++++|+.|++ ++|..
T Consensus 543 ~~~l~~L~~L~L-s~N~l 559 (968)
T PLN00113 543 FSEMPVLSQLDL-SQNQL 559 (968)
T ss_pred HhCcccCCEEEC-CCCcc
Confidence 888999999999 67654
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=7e-25 Score=231.90 Aligned_cols=345 Identities=21% Similarity=0.203 Sum_probs=265.8
Q ss_pred cceEEEEEEecCCCCCccccccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCC
Q 039167 507 KKILHLTLAIGCGPMPIYDNIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLL 586 (923)
Q Consensus 507 ~~~~~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~ 586 (923)
..++.+.+..... ...+..+..+.+|..|.+.+|++..+ ...++.++.||.+++..|+. .-..+|..|..|.
T Consensus 32 t~~~WLkLnrt~L-~~vPeEL~~lqkLEHLs~~HN~L~~v--hGELs~Lp~LRsv~~R~N~L-----KnsGiP~diF~l~ 103 (1255)
T KOG0444|consen 32 TQMTWLKLNRTKL-EQVPEELSRLQKLEHLSMAHNQLISV--HGELSDLPRLRSVIVRDNNL-----KNSGIPTDIFRLK 103 (1255)
T ss_pred hheeEEEechhhh-hhChHHHHHHhhhhhhhhhhhhhHhh--hhhhccchhhHHHhhhcccc-----ccCCCCchhcccc
Confidence 3456666655444 33567788888888888888876553 23377888899999887752 1245788999999
Q ss_pred CCcEEeccCCCCccccchhhhCCCCCcEEecCCCccccccCcc-ccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCc
Q 039167 587 HLKYLNLANQMEIERLPETLCELYNLEHLNVNCCVKLRELPQG-IGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKE 665 (923)
Q Consensus 587 ~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~ 665 (923)
.|..||||+|+ +.+.|..+..-+++-.|+|++|. +..+|.. +.+|+-|-+|||++| .+..+|+.+..|..||+|.+
T Consensus 104 dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~L 180 (1255)
T KOG0444|consen 104 DLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKL 180 (1255)
T ss_pred cceeeecchhh-hhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhc
Confidence 99999999999 99999999999999999999987 9999976 568999999999988 78999999999999999998
Q ss_pred eEecccCCcccccccccCCCCCCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCC
Q 039167 666 FVVGGGYGRACSLGSLKKLNLLRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPP 745 (923)
Q Consensus 666 ~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~ 745 (923)
.++... ...+.+|+.++.|..|++++... ....++.++..+.+|..++++.|++. .+++.+-..
T Consensus 181 s~NPL~---hfQLrQLPsmtsL~vLhms~TqR---Tl~N~Ptsld~l~NL~dvDlS~N~Lp----------~vPecly~l 244 (1255)
T KOG0444|consen 181 SNNPLN---HFQLRQLPSMTSLSVLHMSNTQR---TLDNIPTSLDDLHNLRDVDLSENNLP----------IVPECLYKL 244 (1255)
T ss_pred CCChhh---HHHHhcCccchhhhhhhcccccc---hhhcCCCchhhhhhhhhccccccCCC----------cchHHHhhh
Confidence 877654 34566777777777777765432 22344567778899999999998853 466777788
Q ss_pred CCCCcEEEeeecCCCCCcCcccccccccccEEeEeCCCCCCCCCC-CCCCCCccceeccCCcCceEeCccccCCCCCCCC
Q 039167 746 PNLKELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRNCEHLPP-LGKLPSLESLYIAGMKSVKRVGNEFLGVESDMDG 824 (923)
Q Consensus 746 ~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~ 824 (923)
++|+.|+|++|..+. + ........+|+.|+|+.| .+..+|. +.+|+.|+.|.+.+|. +..- +
T Consensus 245 ~~LrrLNLS~N~ite--L-~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~Nk-L~Fe-----G------- 307 (1255)
T KOG0444|consen 245 RNLRRLNLSGNKITE--L-NMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNK-LTFE-----G------- 307 (1255)
T ss_pred hhhheeccCcCceee--e-eccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCc-cccc-----C-------
Confidence 999999999999887 5 444556789999999999 4555666 8999999999998876 3211 1
Q ss_pred cccccCcccceeeccccccccccccccccccccccCcccceeeecccccCCCCCcCCCCCCCccEEEeccCCchhhhh
Q 039167 825 SSVIAFAKLKKLTFYIMEELEEWDLGTAIKGEIIIMPRLSSLTIWSCRKLKALPDHLLQKSTLQKLEIWGGCHILQER 902 (923)
Q Consensus 825 ~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~~c~~l~~~ 902 (923)
.+++..+|-.|... ....+ ..+.+|+.++.|+.|++|.+..|. |-.+|+.+.-++-|+.|++ .+.|+|.-.
T Consensus 308 -iPSGIGKL~~Levf---~aanN-~LElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLDl-reNpnLVMP 378 (1255)
T KOG0444|consen 308 -IPSGIGKLIQLEVF---HAANN-KLELVPEGLCRCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLDL-RENPNLVMP 378 (1255)
T ss_pred -CccchhhhhhhHHH---Hhhcc-ccccCchhhhhhHHHHHhcccccc-eeechhhhhhcCCcceeec-cCCcCccCC
Confidence 13356666666554 22333 335678889999999999998875 6679999999999999999 888887544
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=3.2e-23 Score=219.39 Aligned_cols=334 Identities=25% Similarity=0.256 Sum_probs=244.1
Q ss_pred cceEEEEEEecCCCCCccccccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCC
Q 039167 507 KKILHLTLAIGCGPMPIYDNIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLL 586 (923)
Q Consensus 507 ~~~~~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~ 586 (923)
.++.|+++..+.. ......+..++.||++.+..|++....+|..+.++..|.+|||++|+ +.+.|..+..-+
T Consensus 55 qkLEHLs~~HN~L-~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-------L~EvP~~LE~AK 126 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQL-ISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-------LREVPTNLEYAK 126 (1255)
T ss_pred hhhhhhhhhhhhh-HhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhh-------hhhcchhhhhhc
Confidence 4566777766655 23456678899999999999887555455557889999999999877 899999999999
Q ss_pred CCcEEeccCCCCccccchhh-hCCCCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCc
Q 039167 587 HLKYLNLANQMEIERLPETL-CELYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKE 665 (923)
Q Consensus 587 ~L~~L~L~~~~~l~~lp~~i-~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~ 665 (923)
++-.|+||+|+ |..+|.++ -+|..|-.|||++|. +..+|+.+..|.+|++|.|++|.....--..+..+++|++|.+
T Consensus 127 n~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm 204 (1255)
T KOG0444|consen 127 NSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM 204 (1255)
T ss_pred CcEEEEcccCc-cccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence 99999999998 99999765 489999999999987 9999999999999999999998432211123345777777777
Q ss_pred eEecccCCcccccccccCCCCCCCceEe--CCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCC
Q 039167 666 FVVGGGYGRACSLGSLKKLNLLRDCRIR--GLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALG 743 (923)
Q Consensus 666 ~~~~~~~~~~~~l~~L~~L~~L~~l~i~--~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~ 743 (923)
......- ...-..+..|.+|+.+.++ .+..++ ..+-+..+|+.|.|+.|.++.. --...
T Consensus 205 s~TqRTl--~N~Ptsld~l~NL~dvDlS~N~Lp~vP-------ecly~l~~LrrLNLS~N~iteL----------~~~~~ 265 (1255)
T KOG0444|consen 205 SNTQRTL--DNIPTSLDDLHNLRDVDLSENNLPIVP-------ECLYKLRNLRRLNLSGNKITEL----------NMTEG 265 (1255)
T ss_pred ccccchh--hcCCCchhhhhhhhhccccccCCCcch-------HHHhhhhhhheeccCcCceeee----------eccHH
Confidence 6554432 1122233344445543333 233332 4556778999999999985431 11222
Q ss_pred CCCCCCcEEEeeecCCCCCcCcccccccccccEEeEeCCCC-CCCCCC-CCCCCCccceeccCCcCceEeCccccCCCCC
Q 039167 744 PPPNLKELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRN-CEHLPP-LGKLPSLESLYIAGMKSVKRVGNEFLGVESD 821 (923)
Q Consensus 744 ~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~-~~~l~~-l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~ 821 (923)
...+|++|+++.|..+. + |..++.++.|+.|.+.+|+. .+.+|+ +|+|.+|+.+...+|. ++-+|..+
T Consensus 266 ~W~~lEtLNlSrNQLt~--L-P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LElVPEgl------ 335 (1255)
T KOG0444|consen 266 EWENLETLNLSRNQLTV--L-PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LELVPEGL------ 335 (1255)
T ss_pred HHhhhhhhccccchhcc--c-hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cccCchhh------
Confidence 34689999999999887 7 88999999999999999975 455777 9999999999999877 66666543
Q ss_pred CCCcccccCcccceeeccccccccccccccccccccccCcccceeeecccccCCCCCcCCCCCCCccEEEe
Q 039167 822 MDGSSVIAFAKLKKLTFYIMEELEEWDLGTAIKGEIIIMPRLSSLTIWSCRKLKALPDHLLQKSTLQKLEI 892 (923)
Q Consensus 822 ~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l 892 (923)
..+++|++|.+.+. .+. .+|+.+.-+|.|+.|++..||+|---|.--..-++|+.-+|
T Consensus 336 ------cRC~kL~kL~L~~N------rLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNI 393 (1255)
T KOG0444|consen 336 ------CRCVKLQKLKLDHN------RLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNI 393 (1255)
T ss_pred ------hhhHHHHHhccccc------cee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeec
Confidence 26788888877633 221 35677888999999999999998765543333356666665
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.80 E-value=6.7e-19 Score=220.48 Aligned_cols=299 Identities=20% Similarity=0.213 Sum_probs=214.0
Q ss_pred ccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchhhhC
Q 039167 529 ALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPETLCE 608 (923)
Q Consensus 529 ~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~ 608 (923)
...+|+.|.+.++.+.. ++..+..+++|+.|+|+++. .+..+|. ++.+++|++|+|++|..+..+|.++++
T Consensus 609 ~~~~L~~L~L~~s~l~~--L~~~~~~l~~Lk~L~Ls~~~------~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~ 679 (1153)
T PLN03210 609 RPENLVKLQMQGSKLEK--LWDGVHSLTGLRNIDLRGSK------NLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQY 679 (1153)
T ss_pred CccCCcEEECcCccccc--cccccccCCCCCEEECCCCC------CcCcCCc-cccCCcccEEEecCCCCccccchhhhc
Confidence 45788888888877543 34456789999999999764 4677774 888999999999999889999999999
Q ss_pred CCCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEecccCCcccccccccCCCCCC
Q 039167 609 LYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLNLLR 688 (923)
Q Consensus 609 L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~ 688 (923)
+++|+.|++++|..+..+|..+ ++++|++|++++|..+..+|.. .++|+.|++..+.... .+.. -.+++|.
T Consensus 680 L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~-lP~~----~~l~~L~ 750 (1153)
T PLN03210 680 LNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE-FPSN----LRLENLD 750 (1153)
T ss_pred cCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc-cccc----ccccccc
Confidence 9999999999999999999877 8999999999999888888754 3567777665544322 1111 1234444
Q ss_pred CceEeCCCC--CCC-hhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCc
Q 039167 689 DCRIRGLGD--VSD-VDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPK 765 (923)
Q Consensus 689 ~l~i~~~~~--~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p 765 (923)
.|.+..+.. +.. ............++|+.|+++.|... ..++..+..+++|+.|+|++|..... + |
T Consensus 751 ~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l---------~~lP~si~~L~~L~~L~Ls~C~~L~~-L-P 819 (1153)
T PLN03210 751 ELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL---------VELPSSIQNLHKLEHLEIENCINLET-L-P 819 (1153)
T ss_pred cccccccchhhccccccccchhhhhccccchheeCCCCCCc---------cccChhhhCCCCCCEEECCCCCCcCe-e-C
Confidence 443332111 000 00000011223468999999887521 23455677889999999998754431 5 5
Q ss_pred ccccccccccEEeEeCCCCCCCCCCCCCCCCccceeccCCcCceEeCccccCCCCCCCCcccccCcccceeecccccccc
Q 039167 766 NWIMSLTNLRFLGLHEWRNCEHLPPLGKLPSLESLYIAGMKSVKRVGNEFLGVESDMDGSSVIAFAKLKKLTFYIMEELE 845 (923)
Q Consensus 766 ~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~ 845 (923)
..+ ++++|+.|+|++|.....+|.+ .++|+.|+|+++. ++.+|..+ ..+++|+.|.+.+|.+|.
T Consensus 820 ~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~-i~~iP~si------------~~l~~L~~L~L~~C~~L~ 883 (1153)
T PLN03210 820 TGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTG-IEEVPWWI------------EKFSNLSFLDMNGCNNLQ 883 (1153)
T ss_pred CCC-CccccCEEECCCCCcccccccc--ccccCEeECCCCC-CccChHHH------------hcCCCCCEEECCCCCCcC
Confidence 444 6899999999999877766654 4689999998875 66555432 268899999999998887
Q ss_pred ccccccccccccccCcccceeeecccccCCCCC
Q 039167 846 EWDLGTAIKGEIIIMPRLSSLTIWSCRKLKALP 878 (923)
Q Consensus 846 ~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~lp 878 (923)
.... .+..+++|+.|++++|+.+..++
T Consensus 884 ~l~~------~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 884 RVSL------NISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred ccCc------ccccccCCCeeecCCCccccccc
Confidence 6543 34578999999999998887543
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.78 E-value=7.2e-20 Score=193.38 Aligned_cols=132 Identities=19% Similarity=0.159 Sum_probs=59.0
Q ss_pred CCCCCCCCcEEEeeecCCCCCcCcccccccccccEEeEeCCCCCCCCCC--CCCCCCccceeccCCcCceEeCccccCCC
Q 039167 742 LGPPPNLKELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRNCEHLPP--LGKLPSLESLYIAGMKSVKRVGNEFLGVE 819 (923)
Q Consensus 742 l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~L~~L~~L~L~~~~~l~~~~~~~~~~~ 819 (923)
+.-+++|+.|+|+.|.... +++..+..+..|+.|.|++|.. ..+.. +..+.+|+.|+|++|. +.-.-++-.
T Consensus 313 WsftqkL~~LdLs~N~i~~--l~~~sf~~L~~Le~LnLs~Nsi-~~l~e~af~~lssL~~LdLr~N~-ls~~IEDaa--- 385 (873)
T KOG4194|consen 313 WSFTQKLKELDLSSNRITR--LDEGSFRVLSQLEELNLSHNSI-DHLAEGAFVGLSSLHKLDLRSNE-LSWCIEDAA--- 385 (873)
T ss_pred hhhcccceeEecccccccc--CChhHHHHHHHhhhhcccccch-HHHHhhHHHHhhhhhhhcCcCCe-EEEEEecch---
Confidence 3334555555555555554 4444444455555555555522 12211 4445555555555544 211111100
Q ss_pred CCCCCcccccCcccceeeccccccccccccccccccccccCcccceeeecccccCCCCCcCCCCCCCccEEEe
Q 039167 820 SDMDGSSVIAFAKLKKLTFYIMEELEEWDLGTAIKGEIIIMPRLSSLTIWSCRKLKALPDHLLQKSTLQKLEI 892 (923)
Q Consensus 820 ~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l 892 (923)
....++++|++|.+.+. +++.+.- ..+..+++|+.|++.+|+.-..=|..+.++ .|++|.+
T Consensus 386 -----~~f~gl~~LrkL~l~gN-qlk~I~k-----rAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 386 -----VAFNGLPSLRKLRLTGN-QLKSIPK-----RAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVM 446 (873)
T ss_pred -----hhhccchhhhheeecCc-eeeecch-----hhhccCcccceecCCCCcceeecccccccc-hhhhhhh
Confidence 01124555555555443 3333321 234455666666666665433334444444 5555555
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.77 E-value=6.8e-20 Score=193.54 Aligned_cols=344 Identities=19% Similarity=0.215 Sum_probs=217.2
Q ss_pred cccceEEEEEEecCCCCCccccccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCccccccccccc-cccc
Q 039167 505 AEKKILHLTLAIGCGPMPIYDNIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVP-TNIE 583 (923)
Q Consensus 505 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~ 583 (923)
.+...+.+.+.++......+..+.++++|+.+.+..|.+.. +|.+.....+|..|+|.+|. +..+- +.+.
T Consensus 76 lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~--IP~f~~~sghl~~L~L~~N~-------I~sv~se~L~ 146 (873)
T KOG4194|consen 76 LPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTR--IPRFGHESGHLEKLDLRHNL-------ISSVTSEELS 146 (873)
T ss_pred CccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhh--cccccccccceeEEeeeccc-------cccccHHHHH
Confidence 34455556666655544445566777777777777776544 34433445567777777654 33322 3455
Q ss_pred CCCCCcEEeccCCCCccccch-hhhCCCCCcEEecCCCccccccC-ccccCCCCCCEEeCCCCcccccCCc-CCCCCCCC
Q 039167 584 KLLHLKYLNLANQMEIERLPE-TLCELYNLEHLNVNCCVKLRELP-QGIGRLRKLMYLDNECTVSLRYLPV-GIGKLIRL 660 (923)
Q Consensus 584 ~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~-~i~~L~~L 660 (923)
.++.||.||||.|. +.++|. ++.+-.++++|+|++|. ++.+- ..+..+.+|..|.|+.| .+..+|. .+.+|++|
T Consensus 147 ~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L 223 (873)
T KOG4194|consen 147 ALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKL 223 (873)
T ss_pred hHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccC-cccccCHHHhhhcchh
Confidence 56677777777776 666663 35555677777777776 55443 33566667777777776 4455553 34457777
Q ss_pred CcCCceEecccCCcccccccccCCCCCCC--ceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHH
Q 039167 661 RRVKEFVVGGGYGRACSLGSLKKLNLLRD--CRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERL 738 (923)
Q Consensus 661 ~~L~~~~~~~~~~~~~~l~~L~~L~~L~~--l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 738 (923)
+.|++..+...-..+..+..|..|++|+. ..|+.+.+ ..+-.+.+++.|+|+.|.+.. .-
T Consensus 224 ~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~D---------G~Fy~l~kme~l~L~~N~l~~---------vn 285 (873)
T KOG4194|consen 224 ESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDD---------GAFYGLEKMEHLNLETNRLQA---------VN 285 (873)
T ss_pred hhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccC---------cceeeecccceeecccchhhh---------hh
Confidence 77776665543322334445555544432 33443332 234457788899999887432 22
Q ss_pred hhcCCCCCCCCcEEEeeecCCCCCcCcccccccccccEEeEeCCCCCCCCCC--CCCCCCccceeccCCcCceEeCcccc
Q 039167 739 LEALGPPPNLKELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRNCEHLPP--LGKLPSLESLYIAGMKSVKRVGNEFL 816 (923)
Q Consensus 739 l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~L~~L~~L~L~~~~~l~~~~~~~~ 816 (923)
-.++-.+..|+.|+++.|.+.. +.+..-+..++|+.|+|++|... .++. +..|..|+.|.|++|. +.++....
T Consensus 286 ~g~lfgLt~L~~L~lS~NaI~r--ih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~a- 360 (873)
T KOG4194|consen 286 EGWLFGLTSLEQLDLSYNAIQR--IHIDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNS-IDHLAEGA- 360 (873)
T ss_pred cccccccchhhhhccchhhhhe--eecchhhhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccc-hHHHHhhH-
Confidence 2356667889999999998877 54444457889999999998544 4444 7788999999999887 55554321
Q ss_pred CCCCCCCCcccccCcccceeeccccccccccccccccccccccCcccceeeecccccCCCCCc-CCCCCCCccEEEeccC
Q 039167 817 GVESDMDGSSVIAFAKLKKLTFYIMEELEEWDLGTAIKGEIIIMPRLSSLTIWSCRKLKALPD-HLLQKSTLQKLEIWGG 895 (923)
Q Consensus 817 ~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~lp~-~l~~l~sL~~L~l~~~ 895 (923)
..+..+|++|++... .+ +|.+.+ ....+..+|+|++|.+.+| +++.+|. .+..+++|++|++ .+
T Consensus 361 ----------f~~lssL~~LdLr~N-~l-s~~IED-aa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL-~~ 425 (873)
T KOG4194|consen 361 ----------FVGLSSLHKLDLRSN-EL-SWCIED-AAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDL-GD 425 (873)
T ss_pred ----------HHHhhhhhhhcCcCC-eE-EEEEec-chhhhccchhhhheeecCc-eeeecchhhhccCcccceecC-CC
Confidence 124566777766542 12 344433 2345667999999999998 5888885 4778999999999 66
Q ss_pred Cch
Q 039167 896 CHI 898 (923)
Q Consensus 896 c~~ 898 (923)
.+-
T Consensus 426 Nai 428 (873)
T KOG4194|consen 426 NAI 428 (873)
T ss_pred Ccc
Confidence 553
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.75 E-value=1.3e-20 Score=190.62 Aligned_cols=337 Identities=21% Similarity=0.269 Sum_probs=212.9
Q ss_pred ceEEEEEEecCCCCCccccccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCccccccccccccccc-CCC
Q 039167 508 KILHLTLAIGCGPMPIYDNIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIE-KLL 586 (923)
Q Consensus 508 ~~~~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~-~l~ 586 (923)
...|+....+.. ...++.+..+++|..|++..|++.. +|+ |..|..|..|++..|. ++.+|..++ ++.
T Consensus 184 ~L~~ld~~~N~L-~tlP~~lg~l~~L~~LyL~~Nki~~--lPe-f~gcs~L~Elh~g~N~-------i~~lpae~~~~L~ 252 (565)
T KOG0472|consen 184 RLKHLDCNSNLL-ETLPPELGGLESLELLYLRRNKIRF--LPE-FPGCSLLKELHVGENQ-------IEMLPAEHLKHLN 252 (565)
T ss_pred HHHhcccchhhh-hcCChhhcchhhhHHHHhhhccccc--CCC-CCccHHHHHHHhcccH-------HHhhHHHHhcccc
Confidence 344444444433 3357778888888888888888665 454 8889999999998665 888888776 899
Q ss_pred CCcEEeccCCCCccccchhhhCCCCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCcCCCCC---CCCCcC
Q 039167 587 HLKYLNLANQMEIERLPETLCELYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKL---IRLRRV 663 (923)
Q Consensus 587 ~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L---~~L~~L 663 (923)
+|..|||++|+ +++.|+.++.|++|+.||+++|. ++.+|.++++| .|+.|-+.|| .++.+-..|-+. .-|++|
T Consensus 253 ~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGN-PlrTiRr~ii~~gT~~vLKyL 328 (565)
T KOG0472|consen 253 SLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGN-PLRTIRREIISKGTQEVLKYL 328 (565)
T ss_pred cceeeeccccc-cccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCC-chHHHHHHHHcccHHHHHHHH
Confidence 99999999998 99999999999999999999987 99999999999 9999999988 344333222111 112222
Q ss_pred CceEecc------cC------CcccccccccCCCCCCCceEeCCC--CCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCC
Q 039167 664 KEFVVGG------GY------GRACSLGSLKKLNLLRDCRIRGLG--DVSDVDEARRAELEKKKNLFELKLHFDQAGRRE 729 (923)
Q Consensus 664 ~~~~~~~------~~------~~~~~l~~L~~L~~L~~l~i~~~~--~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 729 (923)
.-...+. +. .....+.....+.+.+.+.++... .++ .+.+.+. .-.-..+.+++.|.+
T Consensus 329 rs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VP--dEVfea~--~~~~Vt~VnfskNqL---- 400 (565)
T KOG0472|consen 329 RSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVP--DEVFEAA--KSEIVTSVNFSKNQL---- 400 (565)
T ss_pred HHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCC--HHHHHHh--hhcceEEEecccchH----
Confidence 2111100 00 001111222223333333333221 121 1111111 111234455555542
Q ss_pred CccchHHHHhhcCCCCCCCC-cEEEeeecCCCCCcCcccccccccccEEeEeCCCCCCCCCC-CCCCCCccceeccCCcC
Q 039167 730 NEEDEDERLLEALGPPPNLK-ELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRNCEHLPP-LGKLPSLESLYIAGMKS 807 (923)
Q Consensus 730 ~~~~~~~~~l~~l~~~~~L~-~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~~ 807 (923)
.+.+..+.....+. .+.++.+. .. ++|..++.+++|..|+|++| .+.++|. ++.+-.|+.|+++.|.
T Consensus 401 ------~elPk~L~~lkelvT~l~lsnn~-is--fv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~Nr- 469 (565)
T KOG0472|consen 401 ------CELPKRLVELKELVTDLVLSNNK-IS--FVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNR- 469 (565)
T ss_pred ------hhhhhhhHHHHHHHHHHHhhcCc-cc--cchHHHHhhhcceeeecccc-hhhhcchhhhhhhhhheecccccc-
Confidence 22333333222222 23344443 33 55888889999999999998 5556676 8899999999999885
Q ss_pred ceEeCccccCCCCCCCCcccccCcccceeeccccccccccccccccccccccCcccceeeecccccCCCCCcCCCCCCCc
Q 039167 808 VKRVGNEFLGVESDMDGSSVIAFAKLKKLTFYIMEELEEWDLGTAIKGEIIIMPRLSSLTIWSCRKLKALPDHLLQKSTL 887 (923)
Q Consensus 808 l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~sL 887 (923)
+..+|.-.+ .++.|++. -.+++.+....+..+..|.+|..|++.+|. +..+|..++++++|
T Consensus 470 Fr~lP~~~y---------------~lq~lEtl---las~nqi~~vd~~~l~nm~nL~tLDL~nNd-lq~IPp~LgnmtnL 530 (565)
T KOG0472|consen 470 FRMLPECLY---------------ELQTLETL---LASNNQIGSVDPSGLKNMRNLTTLDLQNND-LQQIPPILGNMTNL 530 (565)
T ss_pred cccchHHHh---------------hHHHHHHH---HhccccccccChHHhhhhhhcceeccCCCc-hhhCChhhccccce
Confidence 655554332 12222222 223344544444557899999999999985 77899999999999
Q ss_pred cEEEeccCCch
Q 039167 888 QKLEIWGGCHI 898 (923)
Q Consensus 888 ~~L~l~~~c~~ 898 (923)
++|++ +|.|-
T Consensus 531 ~hLeL-~gNpf 540 (565)
T KOG0472|consen 531 RHLEL-DGNPF 540 (565)
T ss_pred eEEEe-cCCcc
Confidence 99999 77763
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.66 E-value=7.5e-19 Score=177.90 Aligned_cols=309 Identities=26% Similarity=0.259 Sum_probs=171.0
Q ss_pred cccccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccc
Q 039167 524 YDNIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLP 603 (923)
Q Consensus 524 ~~~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp 603 (923)
++.+..+..+..++.+.|+.+. +|..+.+...|+.|+.+.|. +.++|++++.+..|..|+..+|+ +.++|
T Consensus 84 p~aig~l~~l~~l~vs~n~ls~--lp~~i~s~~~l~~l~~s~n~-------~~el~~~i~~~~~l~dl~~~~N~-i~slp 153 (565)
T KOG0472|consen 84 PAAIGELEALKSLNVSHNKLSE--LPEQIGSLISLVKLDCSSNE-------LKELPDSIGRLLDLEDLDATNNQ-ISSLP 153 (565)
T ss_pred CHHHHHHHHHHHhhcccchHhh--ccHHHhhhhhhhhhhccccc-------eeecCchHHHHhhhhhhhccccc-cccCc
Confidence 3444444555555555544332 33334455555555555443 45555555555555555555555 55555
Q ss_pred hhhhCCCCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEecccCCcccccccccC
Q 039167 604 ETLCELYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVGGGYGRACSLGSLKK 683 (923)
Q Consensus 604 ~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~ 683 (923)
+.++++..|..|++.+++ +.++|+...+|+.|+|||...| .++.+|+.++.+.+|..|++..+...
T Consensus 154 ~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~------------ 219 (565)
T KOG0472|consen 154 EDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKIR------------ 219 (565)
T ss_pred hHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcccc------------
Confidence 555555555555555554 5555554444555555555444 45555555555555555544333221
Q ss_pred CCCCCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHh-hcCCCCCCCCcEEEeeecCCCCC
Q 039167 684 LNLLRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLL-EALGPPPNLKELWINKYRGKRNV 762 (923)
Q Consensus 684 L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l-~~l~~~~~L~~L~l~~~~~~~~~ 762 (923)
.+ ..+..|..|++|+++.|.+ +.++ +....++++..|++..|...+
T Consensus 220 ----------~l-----------Pef~gcs~L~Elh~g~N~i----------~~lpae~~~~L~~l~vLDLRdNklke-- 266 (565)
T KOG0472|consen 220 ----------FL-----------PEFPGCSLLKELHVGENQI----------EMLPAEHLKHLNSLLVLDLRDNKLKE-- 266 (565)
T ss_pred ----------cC-----------CCCCccHHHHHHHhcccHH----------HhhHHHHhcccccceeeecccccccc--
Confidence 11 1234555666666665542 1122 234456777888888887777
Q ss_pred cCcccccccccccEEeEeCCCCCCCCCCCCCCCCccceeccCCcCceEeCccccCCC----------------------C
Q 039167 763 VPKNWIMSLTNLRFLGLHEWRNCEHLPPLGKLPSLESLYIAGMKSVKRVGNEFLGVE----------------------S 820 (923)
Q Consensus 763 ~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~----------------------~ 820 (923)
+ |..++-+++|.+|++++|....-.+.+|++ +|+.|.+.||+ ++.+-.++...+ .
T Consensus 267 ~-Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~ 343 (565)
T KOG0472|consen 267 V-PDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGG 343 (565)
T ss_pred C-chHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccc
Confidence 6 666777888888888888555444458888 88888888876 433322111100 0
Q ss_pred CCC--CcccccCc------ccceeeccccccccccc---------------------c----------------------
Q 039167 821 DMD--GSSVIAFA------KLKKLTFYIMEELEEWD---------------------L---------------------- 849 (923)
Q Consensus 821 ~~~--~~~~~~f~------~L~~L~l~~~~~L~~~~---------------------~---------------------- 849 (923)
..+ ......|| ..+.|.+++. +++... +
T Consensus 344 ~e~~~t~~~~~~~~~~~~i~tkiL~~s~~-qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn 422 (565)
T KOG0472|consen 344 TETAMTLPSESFPDIYAIITTKILDVSDK-QLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNN 422 (565)
T ss_pred ccccCCCCCCcccchhhhhhhhhhccccc-ccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcC
Confidence 000 00111232 2344433321 222211 0
Q ss_pred -ccccccccccCcccceeeecccccCCCCCcCCCCCCCccEEEecc
Q 039167 850 -GTAIKGEIIIMPRLSSLTIWSCRKLKALPDHLLQKSTLQKLEIWG 894 (923)
Q Consensus 850 -~~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~ 894 (923)
.+-+|..+..+++|..|++++|. +..+|..++.+.+|+.|+|+.
T Consensus 423 ~isfv~~~l~~l~kLt~L~L~NN~-Ln~LP~e~~~lv~Lq~LnlS~ 467 (565)
T KOG0472|consen 423 KISFVPLELSQLQKLTFLDLSNNL-LNDLPEEMGSLVRLQTLNLSF 467 (565)
T ss_pred ccccchHHHHhhhcceeeecccch-hhhcchhhhhhhhhheecccc
Confidence 01124456789999999999985 889999999999999999943
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.59 E-value=3.6e-17 Score=182.77 Aligned_cols=66 Identities=27% Similarity=0.358 Sum_probs=45.7
Q ss_pred CCCCCCcEEEeeecCCCCCcCcccccccccccEEeEeCCCCCC----------------------CCCC-CCCCCCccce
Q 039167 744 PPPNLKELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRNCE----------------------HLPP-LGKLPSLESL 800 (923)
Q Consensus 744 ~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~----------------------~l~~-l~~L~~L~~L 800 (923)
.+.+|+.++++.+.... + |+|++.+.+|+.|...+|..+. .+|. ++++.+|++|
T Consensus 239 ~p~nl~~~dis~n~l~~--l-p~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tL 315 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLSN--L-PEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTL 315 (1081)
T ss_pred ccccceeeecchhhhhc--c-hHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeee
Confidence 45678888888777776 7 6888877777777776664321 2344 5668889999
Q ss_pred eccCCcCceEeCc
Q 039167 801 YIAGMKSVKRVGN 813 (923)
Q Consensus 801 ~L~~~~~l~~~~~ 813 (923)
+|..|. +..++.
T Consensus 316 dL~~N~-L~~lp~ 327 (1081)
T KOG0618|consen 316 DLQSNN-LPSLPD 327 (1081)
T ss_pred eehhcc-ccccch
Confidence 988765 555554
No 14
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.57 E-value=8e-16 Score=182.44 Aligned_cols=318 Identities=22% Similarity=0.269 Sum_probs=215.8
Q ss_pred cccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccc-cccCCCCCcEEeccCCCCccccch
Q 039167 526 NIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPT-NIEKLLHLKYLNLANQMEIERLPE 604 (923)
Q Consensus 526 ~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~ 604 (923)
........|...+.++....+ +. -..++.|++|-+..|. . .+..++. .|..+++|++|||++|..+.++|+
T Consensus 518 ~~~~~~~~rr~s~~~~~~~~~--~~-~~~~~~L~tLll~~n~----~-~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~ 589 (889)
T KOG4658|consen 518 QVKSWNSVRRMSLMNNKIEHI--AG-SSENPKLRTLLLQRNS----D-WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS 589 (889)
T ss_pred cccchhheeEEEEeccchhhc--cC-CCCCCccceEEEeecc----h-hhhhcCHHHHhhCcceEEEECCCCCccCcCCh
Confidence 344456667777777664332 11 2456689999998764 1 2455544 367899999999999998999999
Q ss_pred hhhCCCCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEecccCCcccccccccCC
Q 039167 605 TLCELYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKL 684 (923)
Q Consensus 605 ~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L 684 (923)
+|+.|.+|++|+++++. +..+|.++++|++|.||++..+..+..+|..+..|++|++|.++... .......+.++..|
T Consensus 590 ~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~L 667 (889)
T KOG4658|consen 590 SIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENL 667 (889)
T ss_pred HHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcc
Confidence 99999999999999998 99999999999999999999998777777766779999999988765 22235677888888
Q ss_pred CCCCCceEeCCCCCCChhhhHHhhcCCCCCCCc----EEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCC
Q 039167 685 NLLRDCRIRGLGDVSDVDEARRAELEKKKNLFE----LKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKR 760 (923)
Q Consensus 685 ~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~----L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~ 760 (923)
.+|+.+.+..... .....+..+..|.+ +.+..+. .......+..+.+|+.|.+.++.+..
T Consensus 668 e~L~~ls~~~~s~------~~~e~l~~~~~L~~~~~~l~~~~~~----------~~~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 668 EHLENLSITISSV------LLLEDLLGMTRLRSLLQSLSIEGCS----------KRTLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred cchhhheeecchh------HhHhhhhhhHHHHHHhHhhhhcccc----------cceeecccccccCcceEEEEcCCCch
Confidence 8888877754221 11111222233332 2222111 12344556778999999999998865
Q ss_pred CCcCccccc-----c-cccccEEeEeCCCCCCCCCCCCCCCCccceeccCCcCceEeCccccCCCCCCCCcccccCcccc
Q 039167 761 NVVPKNWIM-----S-LTNLRFLGLHEWRNCEHLPPLGKLPSLESLYIAGMKSVKRVGNEFLGVESDMDGSSVIAFAKLK 834 (923)
Q Consensus 761 ~~~~p~~~~-----~-l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~ 834 (923)
....|.. . ++++..+.+.+|.....+.+....|+|+.|.+..|..++.+.+..-.... .......|++++
T Consensus 732 --~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~--l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 732 --IVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLE--LKELILPFNKLE 807 (889)
T ss_pred --hhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhh--cccEEecccccc
Confidence 3223432 2 56788888888877777777778899999999999877665432211110 000123566676
Q ss_pred ee-eccccccccccccccccccccccCcccceeeecccccCCCCCc
Q 039167 835 KL-TFYIMEELEEWDLGTAIKGEIIIMPRLSSLTIWSCRKLKALPD 879 (923)
Q Consensus 835 ~L-~l~~~~~L~~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~lp~ 879 (923)
.+ .+.+.+.+........ .+++|+.+.+..||++..+|.
T Consensus 808 ~l~~~~~l~~l~~i~~~~l------~~~~l~~~~ve~~p~l~~~P~ 847 (889)
T KOG4658|consen 808 GLRMLCSLGGLPQLYWLPL------SFLKLEELIVEECPKLGKLPL 847 (889)
T ss_pred cceeeecCCCCceeEeccc------CccchhheehhcCcccccCcc
Confidence 66 3555444444433222 456688888888888776663
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.50 E-value=6.7e-16 Score=172.75 Aligned_cols=311 Identities=23% Similarity=0.239 Sum_probs=206.4
Q ss_pred cccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchh
Q 039167 526 NIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPET 605 (923)
Q Consensus 526 ~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~ 605 (923)
.+..+.+|.++.+..|.++... -.-+.|+.|+.++|. +..+ ..-.--.+|+|++++.+. +..+|+.
T Consensus 194 dls~~~~l~~l~c~rn~ls~l~-----~~g~~l~~L~a~~n~-------l~~~-~~~p~p~nl~~~dis~n~-l~~lp~w 259 (1081)
T KOG0618|consen 194 DLSNLANLEVLHCERNQLSELE-----ISGPSLTALYADHNP-------LTTL-DVHPVPLNLQYLDISHNN-LSNLPEW 259 (1081)
T ss_pred hhhhccchhhhhhhhcccceEE-----ecCcchheeeeccCc-------ceee-ccccccccceeeecchhh-hhcchHH
Confidence 4456666777766666644322 234567778877766 2111 011123579999999998 9999999
Q ss_pred hhCCCCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEecccCCcccccccccCCC
Q 039167 606 LCELYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLN 685 (923)
Q Consensus 606 i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~ 685 (923)
++.+.+|+.|++..|. +..+|..+..+.+|+.|.+..| .+..+|+..+.+++|++|++..+.........+.-+..
T Consensus 260 i~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~-- 335 (1081)
T KOG0618|consen 260 IGACANLEALNANHNR-LVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNA-- 335 (1081)
T ss_pred HHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhccccccchHHHhhhhH--
Confidence 9999999999999987 8999999999999999999888 67889998999999999988766554322211111100
Q ss_pred CCCCceEeCC--CCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCc
Q 039167 686 LLRDCRIRGL--GDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVV 763 (923)
Q Consensus 686 ~L~~l~i~~~--~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~ 763 (923)
.|+.+++... ...+..+ -.....|+.|.+.+|.+++ .....+..+.+|+.|+|++|.... |
T Consensus 336 ~l~~ln~s~n~l~~lp~~~------e~~~~~Lq~LylanN~Ltd---------~c~p~l~~~~hLKVLhLsyNrL~~--f 398 (1081)
T KOG0618|consen 336 SLNTLNVSSNKLSTLPSYE------ENNHAALQELYLANNHLTD---------SCFPVLVNFKHLKVLHLSYNRLNS--F 398 (1081)
T ss_pred HHHHHhhhhcccccccccc------chhhHHHHHHHHhcCcccc---------cchhhhccccceeeeeeccccccc--C
Confidence 0111222111 1111111 1123456777777777543 455667778899999999988777 8
Q ss_pred CcccccccccccEEeEeCCCCCCCCCC-CCCCCCccceeccCCcCceEeCccccCCCCCCCCcccccCcccceeeccccc
Q 039167 764 PKNWIMSLTNLRFLGLHEWRNCEHLPP-LGKLPSLESLYIAGMKSVKRVGNEFLGVESDMDGSSVIAFAKLKKLTFYIME 842 (923)
Q Consensus 764 ~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 842 (923)
|...+.++..|+.|+|++|+ ++.+|. +..++.|+.|...+|. +..+|+ + ...|.|+.++++ |.
T Consensus 399 pas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN~-l~~fPe-~------------~~l~qL~~lDlS-~N 462 (1081)
T KOG0618|consen 399 PASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSNQ-LLSFPE-L------------AQLPQLKVLDLS-CN 462 (1081)
T ss_pred CHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCCc-eeechh-h------------hhcCcceEEecc-cc
Confidence 66677788899999999984 444555 7788889999888776 555552 1 146777777777 44
Q ss_pred cccccccccccccccccCcccceeeecccccCCCCCcCCCCCCCccEEEe
Q 039167 843 ELEEWDLGTAIKGEIIIMPRLSSLTIWSCRKLKALPDHLLQKSTLQKLEI 892 (923)
Q Consensus 843 ~L~~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l 892 (923)
+|+...+....|. |+|++|++++|..+..--..+..+.++..+++
T Consensus 463 ~L~~~~l~~~~p~-----p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i 507 (1081)
T KOG0618|consen 463 NLSEVTLPEALPS-----PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDI 507 (1081)
T ss_pred hhhhhhhhhhCCC-----cccceeeccCCcccccchhhhHHhhhhhheec
Confidence 7777766554332 89999999999864322223333445555555
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.46 E-value=3.5e-13 Score=156.54 Aligned_cols=242 Identities=20% Similarity=0.202 Sum_probs=147.4
Q ss_pred CCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchhhhCCC
Q 039167 531 RGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPETLCELY 610 (923)
Q Consensus 531 ~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~ 610 (923)
.+|+.|.+.+|.+..+ |. .+++|++|++++|. +..+|.. ..+|+.|++++|. +..+|... .
T Consensus 222 ~~L~~L~L~~N~Lt~L--P~---lp~~Lk~LdLs~N~-------LtsLP~l---p~sL~~L~Ls~N~-L~~Lp~lp---~ 282 (788)
T PRK15387 222 AHITTLVIPDNNLTSL--PA---LPPELRTLEVSGNQ-------LTSLPVL---PPGLLELSIFSNP-LTHLPALP---S 282 (788)
T ss_pred cCCCEEEccCCcCCCC--CC---CCCCCcEEEecCCc-------cCcccCc---ccccceeeccCCc-hhhhhhch---h
Confidence 3678888887776542 32 24678888888665 5566643 3567788888887 77777632 4
Q ss_pred CCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEecccCCcccccccccCCCCCCCc
Q 039167 611 NLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLNLLRDC 690 (923)
Q Consensus 611 ~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l 690 (923)
+|+.|++++|. +..+|.. +++|++|++++| .+..+|.... +|+.|.+..+. +..++.
T Consensus 283 ~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~lp~---~L~~L~Ls~N~--------L~~LP~------- 339 (788)
T PRK15387 283 GLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPALPS---ELCKLWAYNNQ--------LTSLPT------- 339 (788)
T ss_pred hcCEEECcCCc-ccccccc---ccccceeECCCC-ccccCCCCcc---cccccccccCc--------cccccc-------
Confidence 67778888876 7777753 467888888877 4555554222 33333332211 111110
Q ss_pred eEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCcccccc
Q 039167 691 RIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKNWIMS 770 (923)
Q Consensus 691 ~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~ 770 (923)
...+|+.|+++.|.+.. ++. .+++|+.|++++|.... + |..
T Consensus 340 --------------------lp~~Lq~LdLS~N~Ls~----------LP~---lp~~L~~L~Ls~N~L~~--L-P~l--- 380 (788)
T PRK15387 340 --------------------LPSGLQELSVSDNQLAS----------LPT---LPSELYKLWAYNNRLTS--L-PAL--- 380 (788)
T ss_pred --------------------cccccceEecCCCccCC----------CCC---CCcccceehhhcccccc--C-ccc---
Confidence 01367788888776432 111 14578888888887766 6 432
Q ss_pred cccccEEeEeCCCCCCCCCCCCCCCCccceeccCCcCceEeCccccCCCCCCCCcccccCcccceeeccccccccccccc
Q 039167 771 LTNLRFLGLHEWRNCEHLPPLGKLPSLESLYIAGMKSVKRVGNEFLGVESDMDGSSVIAFAKLKKLTFYIMEELEEWDLG 850 (923)
Q Consensus 771 l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~ 850 (923)
..+|+.|+|++|... .+|.. .++|+.|++++|. +..+|. .+.+|+.|.+.+ +.+.
T Consensus 381 ~~~L~~LdLs~N~Lt-~LP~l--~s~L~~LdLS~N~-LssIP~---------------l~~~L~~L~Ls~------NqLt 435 (788)
T PRK15387 381 PSGLKELIVSGNRLT-SLPVL--PSELKELMVSGNR-LTSLPM---------------LPSGLLSLSVYR------NQLT 435 (788)
T ss_pred ccccceEEecCCccc-CCCCc--ccCCCEEEccCCc-CCCCCc---------------chhhhhhhhhcc------Cccc
Confidence 357888899888543 45543 3678888888876 444432 233455555443 3332
Q ss_pred cccccccccCcccceeeecccccCCCCCc
Q 039167 851 TAIKGEIIIMPRLSSLTIWSCRKLKALPD 879 (923)
Q Consensus 851 ~~~~~~~~~lp~L~~L~l~~c~~l~~lp~ 879 (923)
.+|..+..+++|+.|++++|+.-...|.
T Consensus 436 -~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 436 -RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred -ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 3566677788888888888875444333
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.35 E-value=1.3e-14 Score=130.31 Aligned_cols=154 Identities=25% Similarity=0.305 Sum_probs=122.3
Q ss_pred ccccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccch
Q 039167 525 DNIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPE 604 (923)
Q Consensus 525 ~~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~ 604 (923)
..+.++++++.|.+++|++..+ |..+..+.+|.+|++++|+ ++++|.+|..|+.||.|+++-|. +..+|.
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~v--ppnia~l~nlevln~~nnq-------ie~lp~~issl~klr~lnvgmnr-l~~lpr 96 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTVV--PPNIAELKNLEVLNLSNNQ-------IEELPTSISSLPKLRILNVGMNR-LNILPR 96 (264)
T ss_pred ccccchhhhhhhhcccCceeec--CCcHHHhhhhhhhhcccch-------hhhcChhhhhchhhhheecchhh-hhcCcc
Confidence 4456677888888999887654 3337889999999999776 89999999999999999999888 889999
Q ss_pred hhhCCCCCcEEecCCCcccc--ccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEecccCCccccccccc
Q 039167 605 TLCELYNLEHLNVNCCVKLR--ELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVGGGYGRACSLGSLK 682 (923)
Q Consensus 605 ~i~~L~~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~ 682 (923)
.+|.++-|+.|||+.|. +. .+|..+..|+.|+-|++++| ....+|+.+++|++||.|.+..++... .-.+++
T Consensus 97 gfgs~p~levldltynn-l~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll~----lpkeig 170 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYNN-LNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLLS----LPKEIG 170 (264)
T ss_pred ccCCCchhhhhhccccc-cccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchhh----CcHHHH
Confidence 99999999999998876 43 48888888999999999888 668899999999999998776655432 233455
Q ss_pred CCCCCCCceEeC
Q 039167 683 KLNLLRDCRIRG 694 (923)
Q Consensus 683 ~L~~L~~l~i~~ 694 (923)
.|+.|+.++|.+
T Consensus 171 ~lt~lrelhiqg 182 (264)
T KOG0617|consen 171 DLTRLRELHIQG 182 (264)
T ss_pred HHHHHHHHhccc
Confidence 555566665554
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.34 E-value=1.8e-12 Score=151.89 Aligned_cols=205 Identities=19% Similarity=0.256 Sum_probs=121.8
Q ss_pred CCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchhhhCCC
Q 039167 531 RGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPETLCELY 610 (923)
Q Consensus 531 ~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~ 610 (923)
+.++.|++++|.+.. +|..+ +.+|++|++++|. +..+|..+. .+|+.|+|++|. +..+|..+. .
T Consensus 199 ~~L~~L~Ls~N~Lts--LP~~l--~~nL~~L~Ls~N~-------LtsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l~--s 262 (754)
T PRK15370 199 EQITTLILDNNELKS--LPENL--QGNIKTLYANSNQ-------LTSIPATLP--DTIQEMELSINR-ITELPERLP--S 262 (754)
T ss_pred cCCcEEEecCCCCCc--CChhh--ccCCCEEECCCCc-------cccCChhhh--ccccEEECcCCc-cCcCChhHh--C
Confidence 467888888887664 33322 2578888888665 666776553 468888888887 778887665 4
Q ss_pred CCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEecccCCcccccccccCCCCCCCc
Q 039167 611 NLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLNLLRDC 690 (923)
Q Consensus 611 ~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l 690 (923)
+|+.|++++|. +..+|..+. .+|++|++++| .+..+|..+. ++|+.|++..+....
T Consensus 263 ~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~N~Lt~------------------ 318 (754)
T PRK15370 263 ALQSLDLFHNK-ISCLPENLP--EELRYLSVYDN-SIRTLPAHLP--SGITHLNVQSNSLTA------------------ 318 (754)
T ss_pred CCCEEECcCCc-cCccccccC--CCCcEEECCCC-ccccCcccch--hhHHHHHhcCCcccc------------------
Confidence 78888888775 777777654 47888888877 5556665432 244444433221110
Q ss_pred eEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCcccccc
Q 039167 691 RIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKNWIMS 770 (923)
Q Consensus 691 ~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~ 770 (923)
++ .. ..++|+.|.++.|.+.. ++..+ +++|+.|++++|.... + |..+
T Consensus 319 -------LP-------~~--l~~sL~~L~Ls~N~Lt~----------LP~~l--~~sL~~L~Ls~N~L~~--L-P~~l-- 365 (754)
T PRK15370 319 -------LP-------ET--LPPGLKTLEAGENALTS----------LPASL--PPELQVLDVSKNQITV--L-PETL-- 365 (754)
T ss_pred -------CC-------cc--ccccceeccccCCcccc----------CChhh--cCcccEEECCCCCCCc--C-Chhh--
Confidence 00 00 01356666676665422 11112 3577777777776655 5 3333
Q ss_pred cccccEEeEeCCCCCCCCCC-CCCCCCccceeccCCcCceEeC
Q 039167 771 LTNLRFLGLHEWRNCEHLPP-LGKLPSLESLYIAGMKSVKRVG 812 (923)
Q Consensus 771 l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~~l~~~~ 812 (923)
.++|+.|+|++|... .+|. +. ++|+.|++++|. +..+|
T Consensus 366 p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~-L~~LP 404 (754)
T PRK15370 366 PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNN-LVRLP 404 (754)
T ss_pred cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCC-cccCc
Confidence 256777777777433 3443 22 357777777765 44444
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.33 E-value=6.3e-12 Score=146.20 Aligned_cols=30 Identities=27% Similarity=0.504 Sum_probs=14.5
Q ss_pred ccceeeecccccCCCCCcCCCCCCCccEEEe
Q 039167 862 RLSSLTIWSCRKLKALPDHLLQKSTLQKLEI 892 (923)
Q Consensus 862 ~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l 892 (923)
+|+.|++++|. ++.+|..+.++++|+.|++
T Consensus 423 ~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 423 GLLSLSVYRNQ-LTRLPESLIHLSSETTVNL 452 (788)
T ss_pred hhhhhhhccCc-ccccChHHhhccCCCeEEC
Confidence 44445554442 3445544444555555555
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.32 E-value=2.1e-12 Score=151.22 Aligned_cols=249 Identities=18% Similarity=0.199 Sum_probs=145.5
Q ss_pred CceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchhhhCCCC
Q 039167 532 GLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPETLCELYN 611 (923)
Q Consensus 532 ~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~ 611 (923)
+...|.+.++.+.. +|..+ .+.|+.|+|++|. +..+|..+. .+|++|++++|. ++.+|..+. .+
T Consensus 179 ~~~~L~L~~~~Lts--LP~~I--p~~L~~L~Ls~N~-------LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~ 242 (754)
T PRK15370 179 NKTELRLKILGLTT--IPACI--PEQITTLILDNNE-------LKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DT 242 (754)
T ss_pred CceEEEeCCCCcCc--CCccc--ccCCcEEEecCCC-------CCcCChhhc--cCCCEEECCCCc-cccCChhhh--cc
Confidence 44667777766554 23222 2467888888665 667776554 478888888887 778887554 36
Q ss_pred CcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEecccCCcccccccccCCCCCCCce
Q 039167 612 LEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLNLLRDCR 691 (923)
Q Consensus 612 L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~ 691 (923)
|+.|+|++|. +..+|..+. .+|+.|++++| .+..+|..+. .+|+.|++..+... .++
T Consensus 243 L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~Lt-----------~LP------ 299 (754)
T PRK15370 243 IQEMELSINR-ITELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDNSIR-----------TLP------ 299 (754)
T ss_pred ccEEECcCCc-cCcCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCCccc-----------cCc------
Confidence 8888888876 777777654 47888888776 5566776553 35666654332111 000
Q ss_pred EeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCccccccc
Q 039167 692 IRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKNWIMSL 771 (923)
Q Consensus 692 i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l 771 (923)
..+ ..+|+.|++++|.+.. ++.. .+++|+.|++++|.... + |..+ .
T Consensus 300 ---------------~~l--p~sL~~L~Ls~N~Lt~----------LP~~--l~~sL~~L~Ls~N~Lt~--L-P~~l--~ 345 (754)
T PRK15370 300 ---------------AHL--PSGITHLNVQSNSLTA----------LPET--LPPGLKTLEAGENALTS--L-PASL--P 345 (754)
T ss_pred ---------------ccc--hhhHHHHHhcCCcccc----------CCcc--ccccceeccccCCcccc--C-Chhh--c
Confidence 000 1246667777766431 1111 13578888888877666 6 4333 2
Q ss_pred ccccEEeEeCCCCCCCCCCCCCCCCccceeccCCcCceEeCccccCCCCCCCCcccccCcccceeecccccccccccccc
Q 039167 772 TNLRFLGLHEWRNCEHLPPLGKLPSLESLYIAGMKSVKRVGNEFLGVESDMDGSSVIAFAKLKKLTFYIMEELEEWDLGT 851 (923)
Q Consensus 772 ~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~ 851 (923)
++|+.|+|++|... .+|. .-.++|+.|+|++|. +..+|.. ..+.|+.|.+.++ ++..+. +
T Consensus 346 ~sL~~L~Ls~N~L~-~LP~-~lp~~L~~LdLs~N~-Lt~LP~~--------------l~~sL~~LdLs~N-~L~~LP--~ 405 (754)
T PRK15370 346 PELQVLDVSKNQIT-VLPE-TLPPTITTLDVSRNA-LTNLPEN--------------LPAALQIMQASRN-NLVRLP--E 405 (754)
T ss_pred CcccEEECCCCCCC-cCCh-hhcCCcCEEECCCCc-CCCCCHh--------------HHHHHHHHhhccC-CcccCc--h
Confidence 67888888887543 3443 113678888888775 4444432 1234666655543 333221 1
Q ss_pred ccccccccCcccceeeeccccc
Q 039167 852 AIKGEIIIMPRLSSLTIWSCRK 873 (923)
Q Consensus 852 ~~~~~~~~lp~L~~L~l~~c~~ 873 (923)
.+|.....+|.+..|++.+|+.
T Consensus 406 sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 406 SLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred hHHHHhhcCCCccEEEeeCCCc
Confidence 2222333457777777777764
No 21
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.31 E-value=8.6e-10 Score=123.58 Aligned_cols=298 Identities=15% Similarity=0.129 Sum_probs=177.5
Q ss_pred CCCceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHH
Q 039167 175 DESEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARA 254 (923)
Q Consensus 175 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 254 (923)
.++.++||++++++|...+...-. +.....+.|+|++|+|||++++.++++.......-..+++++....+...++..
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 456799999999999998854321 224456789999999999999999985322222234567777666778889999
Q ss_pred HHHHHhCC-CC-CCcCHHHHHHHHHHHhc--CCceEEEecCCCCCC-hhhHHHhHHhhhc--CCCCcE--EEEEecchHH
Q 039167 255 IIEALTGC-LP-NFVEFQSLMQHIQKHVA--GKKLLLVLDDVWNEN-FHKWEQFNNCLKN--CLYGSK--ILITTRKEAV 325 (923)
Q Consensus 255 i~~~l~~~-~~-~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~-~~~~~~l~~~l~~--~~~gs~--iivTtR~~~v 325 (923)
++.++... .+ ...+.++....+.+.+. ++..+||||+++.-. ....+.+...+.. ...+++ +|.++....+
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~ 185 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTF 185 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcch
Confidence 99998762 22 22345666777777765 456899999996531 1112233333221 112333 5666665433
Q ss_pred HHHhc-------ccceEeCCCCChHHHHHHHHHhhcCC--CCccchhhHHHHHHHHHHhcCCChHHHHHHHHHH--c---
Q 039167 326 ARIMG-------STNIISVNVLSGMECWLVFESLAFVG--KSMEERENLEKIGREITRKCKGLPLATKTIASLL--R--- 391 (923)
Q Consensus 326 ~~~~~-------~~~~~~l~~L~~~~~~~lf~~~a~~~--~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l--~--- 391 (923)
..... ....+.+.+++.++..+++..++-.. .....+..++.+++......|..+.|+.++-.+. +
T Consensus 186 ~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 186 LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE 265 (394)
T ss_pred hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 32211 12467899999999999998776321 1112233344444444444566788877664332 1
Q ss_pred cCC--CHHHHHHHHhhhhhhhhhhhhhhhhHHHhhcccCChhhHHHHhhhccCCC--CcccChHHHHHH--HHhc--cC-
Q 039167 392 SKN--TEKEWQNILKSEIWEIEQVEKNLLAPLLLSYNELPSKVKQCFTYCAVFPK--DVILKKDKLIEL--WMAQ--ET- 462 (923)
Q Consensus 392 ~~~--~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~~s~fp~--~~~i~~~~Li~~--W~ae--~~- 462 (923)
+.. +.+....+.+.. -.....-.+..||.+.|..+..++-.-+ ...+....+... .+++ +.
T Consensus 266 ~~~~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~ 335 (394)
T PRK00411 266 GSRKVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYE 335 (394)
T ss_pred CCCCcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCC
Confidence 111 344554444321 1122344678999988887766553321 134555555533 2332 11
Q ss_pred -CCHHHHHHHHHHHHHhccccccc
Q 039167 463 -KEMEEIGEEYFNVLASRSFFQEF 485 (923)
Q Consensus 463 -~~~e~~~~~~~~~Lv~r~l~q~~ 485 (923)
.+. ..-..|+++|...+++...
T Consensus 336 ~~~~-~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 336 PRTH-TRFYEYINKLDMLGIINTR 358 (394)
T ss_pred cCcH-HHHHHHHHHHHhcCCeEEE
Confidence 122 3346699999999998754
No 22
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.25 E-value=5.2e-10 Score=140.08 Aligned_cols=268 Identities=16% Similarity=0.188 Sum_probs=165.5
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeC-CcccHHHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVS-DPFDEFRIARAI 255 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s-~~~~~~~~~~~i 255 (923)
..++-|+.-.+. |.. ....+++.|+|++|.||||++.++... ++.++|+++. .+.++..+...+
T Consensus 14 ~~~~~R~rl~~~----l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 14 HNTVVRERLLAK----LSG-----ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred cccCcchHHHHH----Hhc-----ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHH
Confidence 345666544444 422 136789999999999999999998752 2368899986 445667777888
Q ss_pred HHHHhCCCCCC-------------cCHHHHHHHHHHHhc--CCceEEEecCCCCCChhhHH-HhHHhhhcCCCCcEEEEE
Q 039167 256 IEALTGCLPNF-------------VEFQSLMQHIQKHVA--GKKLLLVLDDVWNENFHKWE-QFNNCLKNCLYGSKILIT 319 (923)
Q Consensus 256 ~~~l~~~~~~~-------------~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~-~l~~~l~~~~~gs~iivT 319 (923)
+..+....+.. .+.......+...+. +.+++|||||+..-+..... .+...++....+.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 88775321110 122223333333332 67999999999765433433 455555555567789999
Q ss_pred ecchH---HHHHhcccceEeCC----CCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHHHHHcc
Q 039167 320 TRKEA---VARIMGSTNIISVN----VLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTIASLLRS 392 (923)
Q Consensus 320 tR~~~---v~~~~~~~~~~~l~----~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~ 392 (923)
||... .....-.....++. +|+.+|+.++|.......- . .+...+|.+.|+|.|+++..++..++.
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~---~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI---E----AAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC---C----HHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 99732 11111112345555 9999999999986543211 1 233678999999999999999887755
Q ss_pred CCC-HHHHHHHHhhhhhhhhh-hhhhhhhHHHh-hcccCChhhHHHHhhhccCCCCcccChHHHHHHHHhccCCCHHHHH
Q 039167 393 KNT-EKEWQNILKSEIWEIEQ-VEKNLLAPLLL-SYNELPSKVKQCFTYCAVFPKDVILKKDKLIELWMAQETKEMEEIG 469 (923)
Q Consensus 393 ~~~-~~~w~~~l~~~~~~~~~-~~~~~~~~l~~-sy~~L~~~~k~~fl~~s~fp~~~~i~~~~Li~~W~ae~~~~~e~~~ 469 (923)
... .... . +.+.. ....+...+.- .|+.||++.+..+...|+++. ++.+-+-... + .+-+
T Consensus 232 ~~~~~~~~---~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~~---~~~~l~~~l~---~----~~~~ 294 (903)
T PRK04841 232 NNSSLHDS---A----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLRS---MNDALIVRVT---G----EENG 294 (903)
T ss_pred CCCchhhh---h----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccccc---CCHHHHHHHc---C----CCcH
Confidence 432 1110 0 11111 11234444333 478999999999999999973 4433221111 1 1224
Q ss_pred HHHHHHHHhccccc
Q 039167 470 EEYFNVLASRSFFQ 483 (923)
Q Consensus 470 ~~~~~~Lv~r~l~q 483 (923)
...+++|.+++++.
T Consensus 295 ~~~L~~l~~~~l~~ 308 (903)
T PRK04841 295 QMRLEELERQGLFI 308 (903)
T ss_pred HHHHHHHHHCCCee
Confidence 67888898888864
No 23
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.23 E-value=1.1e-09 Score=115.96 Aligned_cols=183 Identities=18% Similarity=0.133 Sum_probs=117.2
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHH---
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKH--- 279 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~--- 279 (923)
+..++.|+|++|+||||+++.+++.... ..+ ..+|+ +....+..+++..|+..++..... .+.......+.+.
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIE 117 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHH
Confidence 4568999999999999999999985331 111 12233 334457778888898888654322 2222333333322
Q ss_pred --hcCCceEEEecCCCCCChhhHHHhHHhhhcC---CCCcEEEEEecchHHHHHhc----------ccceEeCCCCChHH
Q 039167 280 --VAGKKLLLVLDDVWNENFHKWEQFNNCLKNC---LYGSKILITTRKEAVARIMG----------STNIISVNVLSGME 344 (923)
Q Consensus 280 --l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~---~~gs~iivTtR~~~v~~~~~----------~~~~~~l~~L~~~~ 344 (923)
..+++.+||+||+|..+...++.++...... .....|++|.... ....+. ....+++++++.++
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 3678899999999987766777776543322 1222445555432 221111 13468899999999
Q ss_pred HHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHHHHH
Q 039167 345 CWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTIASLL 390 (923)
Q Consensus 345 ~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l 390 (923)
..+++...+...+......-..+..+.|++.++|.|..|..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999887654322111111224678899999999999999988776
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.20 E-value=3.1e-13 Score=121.51 Aligned_cols=149 Identities=26% Similarity=0.345 Sum_probs=115.7
Q ss_pred cceEEEEEEecCCCCCccccccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCC
Q 039167 507 KKILHLTLAIGCGPMPIYDNIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLL 586 (923)
Q Consensus 507 ~~~~~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~ 586 (923)
..+.++.+..+.. ...++.+..+.+|.+|++++|.+.. +|..+++++.||.|++..|. +..+|..||.++
T Consensus 33 s~ITrLtLSHNKl-~~vppnia~l~nlevln~~nnqie~--lp~~issl~klr~lnvgmnr-------l~~lprgfgs~p 102 (264)
T KOG0617|consen 33 SNITRLTLSHNKL-TVVPPNIAELKNLEVLNLSNNQIEE--LPTSISSLPKLRILNVGMNR-------LNILPRGFGSFP 102 (264)
T ss_pred hhhhhhhcccCce-eecCCcHHHhhhhhhhhcccchhhh--cChhhhhchhhhheecchhh-------hhcCccccCCCc
Confidence 3455566666655 3457778888999999999888654 56668888999999988765 777888888888
Q ss_pred CCcEEeccCCCCcc--ccchhhhCCCCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCC
Q 039167 587 HLKYLNLANQMEIE--RLPETLCELYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVK 664 (923)
Q Consensus 587 ~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~ 664 (923)
-|+.|||..|. +. .+|..+..+..|+.|.|+.|. .+.+|.++++|++|+.|.+..| .+-.+|..++.|+.|++|.
T Consensus 103 ~levldltynn-l~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdn-dll~lpkeig~lt~lrelh 179 (264)
T KOG0617|consen 103 ALEVLDLTYNN-LNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDN-DLLSLPKEIGDLTRLRELH 179 (264)
T ss_pred hhhhhhccccc-cccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccC-chhhCcHHHHHHHHHHHHh
Confidence 89999988876 43 678777778888888888876 7788888888888888888887 5566888888888888887
Q ss_pred ceEe
Q 039167 665 EFVV 668 (923)
Q Consensus 665 ~~~~ 668 (923)
+-.+
T Consensus 180 iqgn 183 (264)
T KOG0617|consen 180 IQGN 183 (264)
T ss_pred cccc
Confidence 6544
No 25
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.17 E-value=1.3e-08 Score=112.88 Aligned_cols=299 Identities=13% Similarity=0.088 Sum_probs=171.3
Q ss_pred CCCceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccc-ccc---ceEEEEEeCCcccHHH
Q 039167 175 DESEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVE-KNF---EKRIWVCVSDPFDEFR 250 (923)
Q Consensus 175 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F---~~~~wv~~s~~~~~~~ 250 (923)
.++.++||++++++|...+...-. +.....+.|+|++|+|||++++.+++..... ... -..+|+++....+...
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~ 90 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQ 90 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHH
Confidence 345799999999999999864211 2244678999999999999999999842111 111 1356777777677788
Q ss_pred HHHHHHHHHh---CCCC-CCcCHHHHHHHHHHHhc--CCceEEEecCCCCCChhhHHHhHHhhhc----CC--CCcEEEE
Q 039167 251 IARAIIEALT---GCLP-NFVEFQSLMQHIQKHVA--GKKLLLVLDDVWNENFHKWEQFNNCLKN----CL--YGSKILI 318 (923)
Q Consensus 251 ~~~~i~~~l~---~~~~-~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~----~~--~gs~iiv 318 (923)
++..|++++. ...+ ...+..+....+.+.+. +++++||||+++.-....-+.+...+.. .. ....+|.
T Consensus 91 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~ 170 (365)
T TIGR02928 91 VLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIG 170 (365)
T ss_pred HHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEE
Confidence 9999999984 2222 22234455555666653 5688999999955410111112222221 11 1224455
Q ss_pred EecchHHHHHhc-----c--cceEeCCCCChHHHHHHHHHhhcCC-CCccchhhHHHHHHHHHHhcCCChHHH-HHHHHH
Q 039167 319 TTRKEAVARIMG-----S--TNIISVNVLSGMECWLVFESLAFVG-KSMEERENLEKIGREITRKCKGLPLAT-KTIASL 389 (923)
Q Consensus 319 TtR~~~v~~~~~-----~--~~~~~l~~L~~~~~~~lf~~~a~~~-~~~~~~~~~~~~~~~i~~~c~GlPLai-~~~~~~ 389 (923)
+|........+. . ...+.+++.+.++..+++..++-.. ......++..+...+++..+.|.|-.+ .++-.+
T Consensus 171 i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a 250 (365)
T TIGR02928 171 ISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVA 250 (365)
T ss_pred EECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 554433221111 1 2468899999999999998876311 111223344445566777777887443 332221
Q ss_pred H--c---cC--CCHHHHHHHHhhhhhhhhhhhhhhhhHHHhhcccCChhhHHHHhhhccCC--CCcccChHHHHHHHHhc
Q 039167 390 L--R---SK--NTEKEWQNILKSEIWEIEQVEKNLLAPLLLSYNELPSKVKQCFTYCAVFP--KDVILKKDKLIELWMAQ 460 (923)
Q Consensus 390 l--~---~~--~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~~s~fp--~~~~i~~~~Li~~W~ae 460 (923)
. . +. -+.+....+.+.. -.....-+...||.+.+..+..++..- ++..+...++...+-..
T Consensus 251 ~~~a~~~~~~~it~~~v~~a~~~~----------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~ 320 (365)
T TIGR02928 251 GEIAEREGAERVTEDHVEKAQEKI----------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEV 320 (365)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 1 1 11 1334433333221 112233466789998887666654221 33446666666644222
Q ss_pred ---cC--CCHHHHHHHHHHHHHhccccccc
Q 039167 461 ---ET--KEMEEIGEEYFNVLASRSFFQEF 485 (923)
Q Consensus 461 ---~~--~~~e~~~~~~~~~Lv~r~l~q~~ 485 (923)
-+ .-.+.....+++.|...+++...
T Consensus 321 ~~~~~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 321 CEDIGVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHhcCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 11 12235567788889888988754
No 26
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.16 E-value=2.7e-10 Score=117.95 Aligned_cols=196 Identities=21% Similarity=0.209 Sum_probs=102.7
Q ss_pred eecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHH----
Q 039167 179 IFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARA---- 254 (923)
Q Consensus 179 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~---- 254 (923)
|+||+.++++|.+++... ..+.+.|+|+.|+|||+|++++.+. .+..-...+|+..........+...
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 72 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYIDFLEESNESSLRSFIEET 72 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHCCTTBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEecccchhhhHHHHHHHHH
Confidence 789999999999988643 3578999999999999999999884 3221113444444343322221111
Q ss_pred -----HHHHHhCCCCC----------CcCHHHHHHHHHHHh--cCCceEEEecCCCCCC------hhhHHHhHHhhhc--
Q 039167 255 -----IIEALTGCLPN----------FVEFQSLMQHIQKHV--AGKKLLLVLDDVWNEN------FHKWEQFNNCLKN-- 309 (923)
Q Consensus 255 -----i~~~l~~~~~~----------~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~------~~~~~~l~~~l~~-- 309 (923)
+...+....+. ..........+.+.+ .+++++||+||+.... ..-...+...+..
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~ 152 (234)
T PF01637_consen 73 SLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL 152 (234)
T ss_dssp HHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc
Confidence 11222211111 112222233333333 2446999999995432 1223344455544
Q ss_pred CCCCcEEEEEecchHHHHH--------hcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChH
Q 039167 310 CLYGSKILITTRKEAVARI--------MGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPL 381 (923)
Q Consensus 310 ~~~gs~iivTtR~~~v~~~--------~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPL 381 (923)
....-.+|++......... .+....+.+++|+.+++++++...+-.. . .. +.-.+..++|+..+||+|.
T Consensus 153 ~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~-~~-~~~~~~~~~i~~~~gG~P~ 229 (234)
T PF01637_consen 153 SQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-I-KL-PFSDEDIEEIYSLTGGNPR 229 (234)
T ss_dssp --TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-HH
T ss_pred ccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-h-cc-cCCHHHHHHHHHHhCCCHH
Confidence 1223345555544444433 2334569999999999999999864322 1 11 1123446899999999999
Q ss_pred HHHH
Q 039167 382 ATKT 385 (923)
Q Consensus 382 ai~~ 385 (923)
.|..
T Consensus 230 ~l~~ 233 (234)
T PF01637_consen 230 YLQE 233 (234)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8864
No 27
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.11 E-value=3.8e-09 Score=114.36 Aligned_cols=279 Identities=16% Similarity=0.125 Sum_probs=145.0
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAII 256 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 256 (923)
.+|+|+++.++.+..++..... .......+.|+|++|+||||+|+.+++. ....+ .++..+ .......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~---~~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANE--MGVNI---RITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHH--hCCCe---EEEecc-cccChHHHHHHH
Confidence 4699999999998887753211 1234567889999999999999999984 32222 112111 111112222222
Q ss_pred HHHhCCCC-CCcCH----HHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecchHHHHHhc-
Q 039167 257 EALTGCLP-NFVEF----QSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRKEAVARIMG- 330 (923)
Q Consensus 257 ~~l~~~~~-~~~~~----~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~- 330 (923)
..+..... -.++. ......+...+.+.+..+|+|+..+.. .+...+ .+.+-|..||+...+...+.
T Consensus 98 ~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~-----~~~~~l---~~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAAR-----SIRLDL---PPFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccc-----ceeecC---CCceEEeecCCcccCCHHHHH
Confidence 22211000 00000 011112222333333333333331110 000011 12345666777544333221
Q ss_pred -ccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHHHHHccCCCHHHHHHHHhhhhhh
Q 039167 331 -STNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTIASLLRSKNTEKEWQNILKSEIWE 409 (923)
Q Consensus 331 -~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~l~~~~~~ 409 (923)
-...+++++++.++..+++.+.+...+... -.+....|++.|+|.|-.+..+...+. .|........-.
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~----~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~~~~I~ 239 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGVEI----DEEGALEIARRSRGTPRIANRLLRRVR------DFAQVKGDGVIT 239 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCCCc----CHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcCCCCCC
Confidence 134689999999999999998775433222 124578999999999965544444321 222211110000
Q ss_pred hhhhhhhhhhHHHhhcccCChhhHHHHh-hhccCCCCcccChHHHHHHHHhccCCCHHHHHHHHHH-HHHhcccccccCC
Q 039167 410 IEQVEKNLLAPLLLSYNELPSKVKQCFT-YCAVFPKDVILKKDKLIELWMAQETKEMEEIGEEYFN-VLASRSFFQEFGR 487 (923)
Q Consensus 410 ~~~~~~~~~~~l~~sy~~L~~~~k~~fl-~~s~fp~~~~i~~~~Li~~W~ae~~~~~e~~~~~~~~-~Lv~r~l~q~~~~ 487 (923)
...-......+...|..|++..+..+. ....|+.+ .+..+.+-... .++..+ +++.++ .|++.++++....
T Consensus 240 -~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l-g~~~~~----~~~~~e~~Li~~~li~~~~~ 312 (328)
T PRK00080 240 -KEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL-GEERDT----IEDVYEPYLIQQGFIQRTPR 312 (328)
T ss_pred -HHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH-CCCcch----HHHHhhHHHHHcCCcccCCc
Confidence 011123445567788899988888775 67777766 46665553332 112233 333444 7899999975544
No 28
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.09 E-value=3.6e-12 Score=129.97 Aligned_cols=255 Identities=21% Similarity=0.162 Sum_probs=156.6
Q ss_pred CceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccc-cccccCCCCCcEEeccCCCCccccch-hhhCC
Q 039167 532 GLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEV-PTNIEKLLHLKYLNLANQMEIERLPE-TLCEL 609 (923)
Q Consensus 532 ~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~-~i~~L 609 (923)
....+.+..|.++.+ ++..|+.++.||.|||++|. |..+ |..|..|..|-.|-+.+++.|+.+|. .+++|
T Consensus 68 ~tveirLdqN~I~~i-P~~aF~~l~~LRrLdLS~N~-------Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL 139 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSI-PPGAFKTLHRLRRLDLSKNN-------ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL 139 (498)
T ss_pred cceEEEeccCCcccC-Chhhccchhhhceecccccc-------hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence 446677888887664 46778999999999999776 5554 67788888888777777444898984 57889
Q ss_pred CCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCc-CCCCCCCCCcCCceEecccCCcccccccccCCCCCC
Q 039167 610 YNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPV-GIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLNLLR 688 (923)
Q Consensus 610 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~ 688 (923)
..||.|.+.-|..-......+..|++|..|.+.+| .++.++. .+..+..++++.+..+.... ...|+.+....
T Consensus 140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~~ 213 (498)
T KOG4237|consen 140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADDL 213 (498)
T ss_pred HHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCcccc-----ccccchhhhHH
Confidence 99999998888733334455788999998888887 5666775 56777777777665443211 11122221110
Q ss_pred -CceE--eCCCCCCCh--hhhHHhhcCCCC---CCCcE--EE-EEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeec
Q 039167 689 -DCRI--RGLGDVSDV--DEARRAELEKKK---NLFEL--KL-HFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYR 757 (923)
Q Consensus 689 -~l~i--~~~~~~~~~--~~~~~~~l~~~~---~L~~L--~l-~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~ 757 (923)
.+.+ .+..-+... .......+...+ +++++ .+ +.+.. .. ..--..+..+++|++|++++|.
T Consensus 214 a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~----d~----~cP~~cf~~L~~L~~lnlsnN~ 285 (498)
T KOG4237|consen 214 AMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFP----DS----ICPAKCFKKLPNLRKLNLSNNK 285 (498)
T ss_pred hhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCc----CC----cChHHHHhhcccceEeccCCCc
Confidence 0111 111100000 000000000011 12222 11 11110 00 0111236678899999999998
Q ss_pred CCCCCcCcccccccccccEEeEeCCCCCCCCCC--CCCCCCccceeccCCcCceEeC
Q 039167 758 GKRNVVPKNWIMSLTNLRFLGLHEWRNCEHLPP--LGKLPSLESLYIAGMKSVKRVG 812 (923)
Q Consensus 758 ~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~L~~L~~L~L~~~~~l~~~~ 812 (923)
.+. +.+.||..+..++.|.|..|+. +.+.. +.++..|+.|+|++|. ++.+.
T Consensus 286 i~~--i~~~aFe~~a~l~eL~L~~N~l-~~v~~~~f~~ls~L~tL~L~~N~-it~~~ 338 (498)
T KOG4237|consen 286 ITR--IEDGAFEGAAELQELYLTRNKL-EFVSSGMFQGLSGLKTLSLYDNQ-ITTVA 338 (498)
T ss_pred cch--hhhhhhcchhhhhhhhcCcchH-HHHHHHhhhccccceeeeecCCe-eEEEe
Confidence 888 7788999999999999988853 33332 7788899999999987 55544
No 29
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.08 E-value=5.7e-09 Score=112.43 Aligned_cols=278 Identities=16% Similarity=0.099 Sum_probs=144.0
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAII 256 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 256 (923)
.+|+|+++.++.+..++..... .......+.++|++|+|||+||+.+.+. ....|. .+..+..... ..+...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~~---~~~~~~~~~~-~~l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANE--MGVNLK---ITSGPALEKP-GDLAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCEE---EeccchhcCc-hhHHHHH
Confidence 3689999999999888853221 1224556889999999999999999884 322221 1111111111 1122222
Q ss_pred HHHhCCC----CCCcC-HHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecchHHHHHh-c
Q 039167 257 EALTGCL----PNFVE-FQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRKEAVARIM-G 330 (923)
Q Consensus 257 ~~l~~~~----~~~~~-~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~-~ 330 (923)
..+.... .+... .......+...+.+.+..+|+|+.... ..+ ...+ .+.+-|..||+...+...+ .
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~--~~~---~~~~---~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSA--RSV---RLDL---PPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccc--cce---eecC---CCeEEEEecCCccccCHHHHh
Confidence 2221110 00000 011122233344444444555544221 111 1111 1244566677765443322 1
Q ss_pred c-cceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHHHHHccCCCHHHHHHHHhhhhhh
Q 039167 331 S-TNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTIASLLRSKNTEKEWQNILKSEIWE 409 (923)
Q Consensus 331 ~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~l~~~~~~ 409 (923)
. ...+++++++.++..+++.+.+....... -.+....|++.|+|.|-.+..++..+ |..........
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~----~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~~ 216 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVEI----EPEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQKI 216 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCCc----CHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCCC
Confidence 1 34689999999999999998775322211 13456789999999997665544432 11110000000
Q ss_pred hh-hhhhhhhhHHHhhcccCChhhHHHHh-hhccCCCCcccChHHHHHHHHhccCCCHHHHHHHHHH-HHHhcccccccC
Q 039167 410 IE-QVEKNLLAPLLLSYNELPSKVKQCFT-YCAVFPKDVILKKDKLIELWMAQETKEMEEIGEEYFN-VLASRSFFQEFG 486 (923)
Q Consensus 410 ~~-~~~~~~~~~l~~sy~~L~~~~k~~fl-~~s~fp~~~~i~~~~Li~~W~ae~~~~~e~~~~~~~~-~Lv~r~l~q~~~ 486 (923)
.. ..-......+...|..++++.+..+. .++.++.+ .+..+.+.... ......++..++ .|+++++++...
T Consensus 217 it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l-----g~~~~~~~~~~e~~Li~~~li~~~~ 290 (305)
T TIGR00635 217 INRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL-----GEDADTIEDVYEPYLLQIGFLQRTP 290 (305)
T ss_pred cCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh-----CCCcchHHHhhhHHHHHcCCcccCC
Confidence 00 01112233356778899998877666 55666543 34443332221 122234555666 699999997554
Q ss_pred C
Q 039167 487 R 487 (923)
Q Consensus 487 ~ 487 (923)
.
T Consensus 291 ~ 291 (305)
T TIGR00635 291 R 291 (305)
T ss_pred c
Confidence 4
No 30
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.07 E-value=1.8e-11 Score=133.34 Aligned_cols=118 Identities=20% Similarity=0.135 Sum_probs=63.8
Q ss_pred cccccCCceEEEeCCCCCCCc---cchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCcccc
Q 039167 526 NIEALRGLRSLLLESTKHSSV---ILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERL 602 (923)
Q Consensus 526 ~~~~~~~Lr~L~l~~~~~~~~---~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~l 602 (923)
.+..+..|+.+.+.++.+... .++..+...+.|+.|+++++...-....+..++..+..+.+|++|++++|......
T Consensus 18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 97 (319)
T cd00116 18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG 97 (319)
T ss_pred HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence 344555677777777665332 23344556666777777655411001122334445556667777777776632244
Q ss_pred chhhhCCCC---CcEEecCCCcccc-----ccCccccCC-CCCCEEeCCCC
Q 039167 603 PETLCELYN---LEHLNVNCCVKLR-----ELPQGIGRL-RKLMYLDNECT 644 (923)
Q Consensus 603 p~~i~~L~~---L~~L~L~~~~~l~-----~lp~~i~~L-~~L~~L~l~~~ 644 (923)
+..+..+.+ |++|++++|. +. .+...+..+ ++|+.|++++|
T Consensus 98 ~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n 147 (319)
T cd00116 98 CGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRN 147 (319)
T ss_pred HHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCC
Confidence 444544444 7777777665 32 223344455 66777777666
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.02 E-value=6e-11 Score=129.27 Aligned_cols=247 Identities=20% Similarity=0.107 Sum_probs=105.4
Q ss_pred HHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCcc-------ccchhhhCCCCCcEEecCCCcc
Q 039167 550 QLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIE-------RLPETLCELYNLEHLNVNCCVK 622 (923)
Q Consensus 550 ~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~-------~lp~~i~~L~~L~~L~L~~~~~ 622 (923)
..+..+..|++|+++++.. .......++..+...+.|++|+++++. +. .++..+.++++|+.|++++|..
T Consensus 17 ~~~~~l~~L~~l~l~~~~l--~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTL--GEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDNAL 93 (319)
T ss_pred HHHHHHhhccEEeecCCCC--cHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence 3344455555555554431 111123344444455555555555554 22 1233444555566666655542
Q ss_pred ccccCccccCCCC---CCEEeCCCCcccc----cCCcCCCCC-CCCCcCCceEecccCCcc-cccccccCCCCCCCceEe
Q 039167 623 LRELPQGIGRLRK---LMYLDNECTVSLR----YLPVGIGKL-IRLRRVKEFVVGGGYGRA-CSLGSLKKLNLLRDCRIR 693 (923)
Q Consensus 623 l~~lp~~i~~L~~---L~~L~l~~~~~l~----~~p~~i~~L-~~L~~L~~~~~~~~~~~~-~~l~~L~~L~~L~~l~i~ 693 (923)
....+..+..+.+ |++|++++|.... .+...+..+ ++|+.|++..+....... .....+..+.+|+.+.+.
T Consensus 94 ~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~ 173 (319)
T cd00116 94 GPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLA 173 (319)
T ss_pred ChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECc
Confidence 2233333333333 5555555553210 111223333 455555544443321000 111123333344444443
Q ss_pred CCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCccccc----
Q 039167 694 GLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKNWIM---- 769 (923)
Q Consensus 694 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~---- 769 (923)
...-...........+...++|+.|+++.|.+.. .....+...+..+++|+.|++++|.... .....+.
T Consensus 174 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~-----~~~~~l~~~~~~~~~L~~L~ls~n~l~~--~~~~~l~~~~~ 246 (319)
T cd00116 174 NNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTD-----EGASALAETLASLKSLEVLNLGDNNLTD--AGAAALASALL 246 (319)
T ss_pred CCCCchHHHHHHHHHHHhCCCCCEEeccCCccCh-----HHHHHHHHHhcccCCCCEEecCCCcCch--HHHHHHHHHHh
Confidence 3211111111222333444566666666655321 1122334445555666666666655432 1011111
Q ss_pred -ccccccEEeEeCCCCCC----CCC-CCCCCCCccceeccCCc
Q 039167 770 -SLTNLRFLGLHEWRNCE----HLP-PLGKLPSLESLYIAGMK 806 (923)
Q Consensus 770 -~l~~L~~L~L~~~~~~~----~l~-~l~~L~~L~~L~L~~~~ 806 (923)
..+.|+.|++++|.... .+. .+..+++|++|++++|.
T Consensus 247 ~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 247 SPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred ccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 12566777776664331 111 13444667777776655
No 32
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.96 E-value=3.6e-11 Score=122.83 Aligned_cols=274 Identities=19% Similarity=0.150 Sum_probs=163.7
Q ss_pred ccceEEEEEEecCCCCCccccccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccc-cccC
Q 039167 506 EKKILHLTLAIGCGPMPIYDNIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPT-NIEK 584 (923)
Q Consensus 506 ~~~~~~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~ 584 (923)
+.....+.+..+.+.......|..+++||.|+++.|.++.+. |..|..++.|-.|-+.+++ .|..+|+ .|++
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~-p~AF~GL~~l~~Lvlyg~N------kI~~l~k~~F~g 138 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIA-PDAFKGLASLLSLVLYGNN------KITDLPKGAFGG 138 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcC-hHhhhhhHhhhHHHhhcCC------chhhhhhhHhhh
Confidence 556667778877775556678999999999999999988765 7779999999888888733 4889985 4789
Q ss_pred CCCCcEEeccCCCCcccc-chhhhCCCCCcEEecCCCccccccCc-cccCCCCCCEEeCCCCccc------------ccC
Q 039167 585 LLHLKYLNLANQMEIERL-PETLCELYNLEHLNVNCCVKLRELPQ-GIGRLRKLMYLDNECTVSL------------RYL 650 (923)
Q Consensus 585 l~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l------------~~~ 650 (923)
|..|+-|.+.-|+ +..+ .+.+..|++|..|.+..|. +..++. .+..+..++++++..|..+ ...
T Consensus 139 L~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~ 216 (498)
T KOG4237|consen 139 LSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMN 216 (498)
T ss_pred HHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhc
Confidence 9999999999888 5544 5678899999999999987 888887 6888999999988766311 111
Q ss_pred CcCCCCCCCCCcCCceEecccCCcccccccccCCCCCCC-ceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCC
Q 039167 651 PVGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLNLLRD-CRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRE 729 (923)
Q Consensus 651 p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~-l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 729 (923)
|...+...-..-..+............+. .++..+.. +.-.. .... ..-...+..+++|+.|++++|.++..
T Consensus 217 ~ietsgarc~~p~rl~~~Ri~q~~a~kf~--c~~esl~s~~~~~d--~~d~--~cP~~cf~~L~~L~~lnlsnN~i~~i- 289 (498)
T KOG4237|consen 217 PIETSGARCVSPYRLYYKRINQEDARKFL--CSLESLPSRLSSED--FPDS--ICPAKCFKKLPNLRKLNLSNNKITRI- 289 (498)
T ss_pred hhhcccceecchHHHHHHHhcccchhhhh--hhHHhHHHhhcccc--CcCC--cChHHHHhhcccceEeccCCCccchh-
Confidence 11122111111111111111100000000 00111110 00000 0000 01112366778888888888875431
Q ss_pred CccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCcccccccccccEEeEeCCCCCCCCCC-CCCCCCccceeccCC
Q 039167 730 NEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRNCEHLPP-LGKLPSLESLYIAGM 805 (923)
Q Consensus 730 ~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~ 805 (923)
-...+.....+++|.|.+|.... +....|..+.+|+.|+|.+|......|. +..+.+|..|.|-.|
T Consensus 290 --------~~~aFe~~a~l~eL~L~~N~l~~--v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 290 --------EDGAFEGAAELQELYLTRNKLEF--VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred --------hhhhhcchhhhhhhhcCcchHHH--HHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccC
Confidence 12234445556666666665444 3233344566666666666654433333 555556666655543
No 33
>PF05729 NACHT: NACHT domain
Probab=98.95 E-value=6.4e-09 Score=101.11 Aligned_cols=142 Identities=20% Similarity=0.271 Sum_probs=87.6
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccc----cceEEEEEeCCcccHH---HHHHHHHHHHhCCCCCCcCHHHHHHHHH
Q 039167 205 HIISLVGMGGIGKTTLAQFAYNNGDVEKN----FEKRIWVCVSDPFDEF---RIARAIIEALTGCLPNFVEFQSLMQHIQ 277 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 277 (923)
+++.|+|.+|+||||++++++........ +...+|+..+...... .+...|..+..... ..... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHH---HHH
Confidence 57899999999999999999875322222 4556677766544332 33333333332211 11111 122
Q ss_pred H-HhcCCceEEEecCCCCCChh-------hHHH-hHHhhhc-CCCCcEEEEEecchHH---HHHhcccceEeCCCCChHH
Q 039167 278 K-HVAGKKLLLVLDDVWNENFH-------KWEQ-FNNCLKN-CLYGSKILITTRKEAV---ARIMGSTNIISVNVLSGME 344 (923)
Q Consensus 278 ~-~l~~kr~LlVlDdv~~~~~~-------~~~~-l~~~l~~-~~~gs~iivTtR~~~v---~~~~~~~~~~~l~~L~~~~ 344 (923)
. .-..++++||+|++.+-... .+.. +...++. ...+.++|||+|.... .........+++.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 2 23678999999998543211 1222 3334443 2468999999998665 3333445689999999999
Q ss_pred HHHHHHHh
Q 039167 345 CWLVFESL 352 (923)
Q Consensus 345 ~~~lf~~~ 352 (923)
..+++.+.
T Consensus 155 ~~~~~~~~ 162 (166)
T PF05729_consen 155 IKQYLRKY 162 (166)
T ss_pred HHHHHHHH
Confidence 99999765
No 34
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.82 E-value=4.6e-07 Score=102.90 Aligned_cols=266 Identities=20% Similarity=0.248 Sum_probs=169.2
Q ss_pred HHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCC-cccHHHHHHHHHHHHhCCCC
Q 039167 186 KNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSD-PFDEFRIARAIIEALTGCLP 264 (923)
Q Consensus 186 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~ 264 (923)
..++.+.|.. ..+.+.+.|..++|.|||||+.+... ....=..+.|.+... +.++..+...++..++.-.+
T Consensus 24 R~rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~---~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p 95 (894)
T COG2909 24 RPRLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRE---LAADGAAVAWLSLDESDNDPARFLSYLIAALQQATP 95 (894)
T ss_pred cHHHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHH---hcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCc
Confidence 4455566643 23789999999999999999999875 122334688999764 56788899999998885433
Q ss_pred CCc-------------CHHHHHHHHHHHhc--CCceEEEecCCCCCChhhHH-HhHHhhhcCCCCcEEEEEecchHH---
Q 039167 265 NFV-------------EFQSLMQHIQKHVA--GKKLLLVLDDVWNENFHKWE-QFNNCLKNCLYGSKILITTRKEAV--- 325 (923)
Q Consensus 265 ~~~-------------~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~-~l~~~l~~~~~gs~iivTtR~~~v--- 325 (923)
... +...+...+...+. .++..+||||..-....... .+.-.+.....+-..|||||+.--
T Consensus 96 ~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~l 175 (894)
T COG2909 96 TLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGL 175 (894)
T ss_pred cccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcc
Confidence 322 22233333333332 46789999998654333333 355556666778899999998531
Q ss_pred HHHhcccceEeCC----CCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHHHHHccCCCHHHHHH
Q 039167 326 ARIMGSTNIISVN----VLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTIASLLRSKNTEKEWQN 401 (923)
Q Consensus 326 ~~~~~~~~~~~l~----~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~ 401 (923)
++.--....+++. .++.+|+-++|.......-+ +.-.+.+.+..+|=+-|+..++-.++.+.+.+.-..
T Consensus 176 a~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld-------~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~ 248 (894)
T COG2909 176 ARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLD-------AADLKALYDRTEGWAAALQLIALALRNNTSAEQSLR 248 (894)
T ss_pred cceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCC-------hHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhh
Confidence 1110012233333 47899999999876422111 223778999999999999999988885444433322
Q ss_pred HHhhhhhhhhhhhhhhhh-HHHhhcccCChhhHHHHhhhccCCCCcccChHHHHHHHHhccCCCHHHHHHHHHHHHHhcc
Q 039167 402 ILKSEIWEIEQVEKNLLA-PLLLSYNELPSKVKQCFTYCAVFPKDVILKKDKLIELWMAQETKEMEEIGEEYFNVLASRS 480 (923)
Q Consensus 402 ~l~~~~~~~~~~~~~~~~-~l~~sy~~L~~~~k~~fl~~s~fp~~~~i~~~~Li~~W~ae~~~~~e~~~~~~~~~Lv~r~ 480 (923)
.+. +....+.+ ...=-++.||+++|..++-+|+++.= -..|+..- +-++-|..++++|-+++
T Consensus 249 ~Ls-------G~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~L------tg~~ng~amLe~L~~~g 311 (894)
T COG2909 249 GLS-------GAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNAL------TGEENGQAMLEELERRG 311 (894)
T ss_pred hcc-------chHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHH------hcCCcHHHHHHHHHhCC
Confidence 222 11111111 12234688999999999999998651 12333332 23445778899999998
Q ss_pred ccc
Q 039167 481 FFQ 483 (923)
Q Consensus 481 l~q 483 (923)
++-
T Consensus 312 LFl 314 (894)
T COG2909 312 LFL 314 (894)
T ss_pred Cce
Confidence 764
No 35
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.81 E-value=3.4e-07 Score=104.52 Aligned_cols=296 Identities=13% Similarity=0.092 Sum_probs=163.7
Q ss_pred CCCceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCccc---ccccc--eEEEEEeCCcccHH
Q 039167 175 DESEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDV---EKNFE--KRIWVCVSDPFDEF 249 (923)
Q Consensus 175 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~F~--~~~wv~~s~~~~~~ 249 (923)
.+..+.|||+++++|...|...-. +.....++.|+|++|.|||+.++.|.+.... +...+ .+++|+...-.+..
T Consensus 753 VPD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~ 831 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPN 831 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHH
Confidence 356799999999999988864321 1223367889999999999999999874211 11222 35677766666788
Q ss_pred HHHHHHHHHHhCCCCC-CcCHHHHHHHHHHHhc---CCceEEEecCCCCCChhhHHHhHHhhhcC-CCCcEEEE--Eecc
Q 039167 250 RIARAIIEALTGCLPN-FVEFQSLMQHIQKHVA---GKKLLLVLDDVWNENFHKWEQFNNCLKNC-LYGSKILI--TTRK 322 (923)
Q Consensus 250 ~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~---~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iiv--TtR~ 322 (923)
.++..|.+++....+. .....+....+...+. +...+||||++..-....-+.|...+.+. ..+++|+| +|..
T Consensus 832 sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNd 911 (1164)
T PTZ00112 832 AAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNT 911 (1164)
T ss_pred HHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCc
Confidence 8999999998554332 2233344444554442 23458999999532211222344444332 24566554 3332
Q ss_pred h--------HHHHHhcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHHHHHccCC
Q 039167 323 E--------AVARIMGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTIASLLRSKN 394 (923)
Q Consensus 323 ~--------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~ 394 (923)
. .+...++ ...+...|.+.++-.+++..++-.......+..++-+|+.++...|-.=.||.++-.+.....
T Consensus 912 lDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEike 990 (1164)
T PTZ00112 912 MDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKR 990 (1164)
T ss_pred hhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcC
Confidence 1 1111122 234677999999999999988754322233444555556555555556677766654443221
Q ss_pred ----CHHHHHHHHhhhhhhhhhhhhhhhhHHHhhcccCChhhHHHHhhhccCCC---CcccChHHHHHHHH--hc-----
Q 039167 395 ----TEKEWQNILKSEIWEIEQVEKNLLAPLLLSYNELPSKVKQCFTYCAVFPK---DVILKKDKLIELWM--AQ----- 460 (923)
Q Consensus 395 ----~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~~s~fp~---~~~i~~~~Li~~W~--ae----- 460 (923)
..+.-+.+.... ....+.-....||.+.|..+..+...-+ ...++-..+..... ++
T Consensus 991 gskVT~eHVrkAleei----------E~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~ 1060 (1164)
T PTZ00112 991 GQKIVPRDITEATNQL----------FDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKY 1060 (1164)
T ss_pred CCccCHHHHHHHHHHH----------HhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhh
Confidence 112222221110 0111223446788887776554433212 22355555444332 22
Q ss_pred -cC-CCHHHHHHHHHHHHHhccccc
Q 039167 461 -ET-KEMEEIGEEYFNVLASRSFFQ 483 (923)
Q Consensus 461 -~~-~~~e~~~~~~~~~Lv~r~l~q 483 (923)
+. ..-+ ....|+.+|...+++-
T Consensus 1061 iGv~plTq-RV~d~L~eL~~LGIIl 1084 (1164)
T PTZ00112 1061 IGMCSNNE-LFKIMLDKLVKMGILL 1084 (1164)
T ss_pred cCCCCcHH-HHHHHHHHHHhcCeEE
Confidence 11 1122 5667778888777764
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.81 E-value=2.4e-10 Score=122.16 Aligned_cols=196 Identities=24% Similarity=0.295 Sum_probs=143.4
Q ss_pred cccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchhhh
Q 039167 528 EALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPETLC 607 (923)
Q Consensus 528 ~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~ 607 (923)
..+..-...+++.|++.. +|..+..|..|..|.|+.|. +..+|..+++|..|.||+|+.|+ +..+|..++
T Consensus 72 ~~ltdt~~aDlsrNR~~e--lp~~~~~f~~Le~liLy~n~-------~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC 141 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFSE--LPEEACAFVSLESLILYHNC-------IRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLC 141 (722)
T ss_pred ccccchhhhhcccccccc--CchHHHHHHHHHHHHHHhcc-------ceecchhhhhhhHHHHhhhccch-hhcCChhhh
Confidence 344455566777777665 45557888889999999776 88899999999999999999999 999999999
Q ss_pred CCCCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEecccCCcccccccccCCCCC
Q 039167 608 ELYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLNLL 687 (923)
Q Consensus 608 ~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L 687 (923)
.|+ |+.|.+++|+ ++.+|..|+.+..|.+|+.+.| .+..+|..++.+.+|+.|.+..+.... ...+|..|
T Consensus 142 ~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~l~~----lp~El~~L--- 211 (722)
T KOG0532|consen 142 DLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNHLED----LPEELCSL--- 211 (722)
T ss_pred cCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhhhhh----CCHHHhCC---
Confidence 986 9999999987 9999999999999999999998 678899999999999988765544322 22222222
Q ss_pred CCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCccc
Q 039167 688 RDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKNW 767 (923)
Q Consensus 688 ~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~ 767 (923)
.|..|++++|.+. .++-.+..+..|+.|-|.+|.... ||.-
T Consensus 212 --------------------------pLi~lDfScNkis----------~iPv~fr~m~~Lq~l~LenNPLqS---PPAq 252 (722)
T KOG0532|consen 212 --------------------------PLIRLDFSCNKIS----------YLPVDFRKMRHLQVLQLENNPLQS---PPAQ 252 (722)
T ss_pred --------------------------ceeeeecccCcee----------ecchhhhhhhhheeeeeccCCCCC---ChHH
Confidence 2455666666532 244455566677777777776654 3443
Q ss_pred cc---ccccccEEeEeCC
Q 039167 768 IM---SLTNLRFLGLHEW 782 (923)
Q Consensus 768 ~~---~l~~L~~L~L~~~ 782 (923)
++ ...=-++|+..-|
T Consensus 253 IC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 253 ICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred HHhccceeeeeeecchhc
Confidence 33 2333456666666
No 37
>PRK06893 DNA replication initiation factor; Validated
Probab=98.75 E-value=2.6e-07 Score=94.15 Aligned_cols=156 Identities=15% Similarity=0.162 Sum_probs=97.0
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGK 283 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 283 (923)
...+.|+|+.|+|||+|++.+++. .......+.|+.+.... .... .+.+.+. +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~~---~~~~---------------------~~~~~~~-~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKSQ---YFSP---------------------AVLENLE-Q 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHhh---hhhH---------------------HHHhhcc-c
Confidence 357899999999999999999984 33333455677653210 0000 1111122 3
Q ss_pred ceEEEecCCCCCC-hhhHHH-hHHhhhcC-CCCcEEEE-Eecc---------hHHHHHhcccceEeCCCCChHHHHHHHH
Q 039167 284 KLLLVLDDVWNEN-FHKWEQ-FNNCLKNC-LYGSKILI-TTRK---------EAVARIMGSTNIISVNVLSGMECWLVFE 350 (923)
Q Consensus 284 r~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~iiv-TtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~ 350 (923)
.-+|||||+|... ...|+. +...+... ..|..+|| |++. +++...+....+++++++++++.++++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 3599999998642 245553 44444332 23556655 4443 3566666666799999999999999999
Q ss_pred HhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHHHHH
Q 039167 351 SLAFVGKSMEERENLEKIGREITRKCKGLPLATKTIASLL 390 (923)
Q Consensus 351 ~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l 390 (923)
+.++..+-.. -+++..-|++.+.|..-++..+-..+
T Consensus 172 ~~a~~~~l~l----~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 172 RNAYQRGIEL----SDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHcCCCC----CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 8886433211 23457788888888776665444333
No 38
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.72 E-value=5.8e-07 Score=93.59 Aligned_cols=173 Identities=21% Similarity=0.255 Sum_probs=103.8
Q ss_pred CCCCceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHH
Q 039167 174 IDESEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIAR 253 (923)
Q Consensus 174 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 253 (923)
+.+.+++|-...+.++++ ...+.-...||++|+||||||+.+.. .....|. .+|-..+-.+-++
T Consensus 27 vGQ~HLlg~~~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~-----~~sAv~~gvkdlr 90 (436)
T COG2256 27 VGQEHLLGEGKPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAG--TTNAAFE-----ALSAVTSGVKDLR 90 (436)
T ss_pred cChHhhhCCCchHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHH--hhCCceE-----EeccccccHHHHH
Confidence 334456666555555443 34677888999999999999999988 3444443 3333333233333
Q ss_pred HHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEE--EecchHH---HHH
Q 039167 254 AIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILI--TTRKEAV---ARI 328 (923)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--TtR~~~v---~~~ 328 (923)
.+++.- -+....|++.+|++|.|..-+..+-+. +||.-..|.-|+| ||.++.- ...
T Consensus 91 ~i~e~a----------------~~~~~~gr~tiLflDEIHRfnK~QQD~---lLp~vE~G~iilIGATTENPsF~ln~AL 151 (436)
T COG2256 91 EIIEEA----------------RKNRLLGRRTILFLDEIHRFNKAQQDA---LLPHVENGTIILIGATTENPSFELNPAL 151 (436)
T ss_pred HHHHHH----------------HHHHhcCCceEEEEehhhhcChhhhhh---hhhhhcCCeEEEEeccCCCCCeeecHHH
Confidence 333221 122345899999999997765444343 4555556777776 6665421 122
Q ss_pred hcccceEeCCCCChHHHHHHHHHhhcCCCCc-c-chh-hHHHHHHHHHHhcCCChH
Q 039167 329 MGSTNIISVNVLSGMECWLVFESLAFVGKSM-E-ERE-NLEKIGREITRKCKGLPL 381 (923)
Q Consensus 329 ~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~-~-~~~-~~~~~~~~i~~~c~GlPL 381 (923)
.....++.+++|+.++-.+++.+.+...... . ... --++....+++.++|---
T Consensus 152 lSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 152 LSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred hhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 3456899999999999999998833211110 0 001 113356678888888543
No 39
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.69 E-value=6.2e-07 Score=100.22 Aligned_cols=178 Identities=19% Similarity=0.224 Sum_probs=105.9
Q ss_pred ceecchhhHHH---HHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHH
Q 039167 178 EIFGRKDEKNE---LVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARA 254 (923)
Q Consensus 178 ~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 254 (923)
+++|++..+.. +..++.. .....+.++|++|+||||+|+.+++. ....| +.++......+-.+.
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~~-----~~l~a~~~~~~~ir~ 79 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGA--TDAPF-----EALSAVTSGVKDLRE 79 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHH--hCCCE-----EEEecccccHHHHHH
Confidence 57888777555 6666643 24557888999999999999999884 33332 222221111111122
Q ss_pred HHHHHhCCCCCCcCHHHHHHHHHH-HhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEE--EecchH--HH-HH
Q 039167 255 IIEALTGCLPNFVEFQSLMQHIQK-HVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILI--TTRKEA--VA-RI 328 (923)
Q Consensus 255 i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--TtR~~~--v~-~~ 328 (923)
+++. ... ...+++.+|++|+++.......+.+...+.. |..++| ||.+.. +. ..
T Consensus 80 ii~~-----------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL 139 (413)
T PRK13342 80 VIEE-----------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPAL 139 (413)
T ss_pred HHHH-----------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHH
Confidence 2221 111 1246789999999987665556666665543 455555 344332 11 11
Q ss_pred hcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHHHH
Q 039167 329 MGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTIASL 389 (923)
Q Consensus 329 ~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~ 389 (923)
......+++.+++.++.+.++.+.+....... ..-..+....|++.|+|.+..+..+...
T Consensus 140 ~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 140 LSRAQVFELKPLSEEDIEQLLKRALEDKERGL-VELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred hccceeeEeCCCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 23357899999999999999987543211100 0112345778899999998776544433
No 40
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.65 E-value=3.2e-07 Score=110.32 Aligned_cols=266 Identities=16% Similarity=0.177 Sum_probs=161.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEE---EEEeCCccc---HHHH
Q 039167 178 EIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRI---WVCVSDPFD---EFRI 251 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~---wv~~s~~~~---~~~~ 251 (923)
.++||+.+++.|...+.... .....++.+.|..|||||+|+++|... +.+.+...+ +-....+.. ....
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~---~g~~~~~lv~G~sGIGKsalv~ev~~~--i~~~~~~~i~~~f~q~~~~ipl~~lvq~ 75 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVS---KGRGEVVLVAGESGIGKSALVNEVHKP--ITQQRGYFIKGKFDQFERNIPLSPLVQA 75 (849)
T ss_pred CCCchHhHHHHHHHHHHHHh---CCCeEEEEEeecCCCcHHHHHHHHHHH--HhccceeeeHhhcccccCCCchHHHHHH
Confidence 37899999999999887553 345679999999999999999999873 333321111 111222211 2233
Q ss_pred HHHHHHHHhCC-------------------C--------------C---C-----CcCHHH-----HHHHHHHHh-cCCc
Q 039167 252 ARAIIEALTGC-------------------L--------------P---N-----FVEFQS-----LMQHIQKHV-AGKK 284 (923)
Q Consensus 252 ~~~i~~~l~~~-------------------~--------------~---~-----~~~~~~-----~~~~l~~~l-~~kr 284 (923)
+++++.++... . . . ....+. ....+.... +.|+
T Consensus 76 ~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~p 155 (849)
T COG3899 76 FRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHP 155 (849)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCC
Confidence 34444333110 0 0 0 000011 112222233 4569
Q ss_pred eEEEecCCCCCChhhHHHhHHhhhcCCC----CcEE--EEEecch--HHHHHhcccceEeCCCCChHHHHHHHHHhhcCC
Q 039167 285 LLLVLDDVWNENFHKWEQFNNCLKNCLY----GSKI--LITTRKE--AVARIMGSTNIISVNVLSGMECWLVFESLAFVG 356 (923)
Q Consensus 285 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~----gs~i--ivTtR~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~ 356 (923)
.++|+||+.+.+....+-+......-.. ...| +.|.+.. .+.........+.|.||+..+...+........
T Consensus 156 lVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~ 235 (849)
T COG3899 156 LVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT 235 (849)
T ss_pred eEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc
Confidence 9999999988777777766665543321 1123 3333332 222222345799999999999999998765332
Q ss_pred CCccchhhHHHHHHHHHHhcCCChHHHHHHHHHHccC------CCHHHHHHHHhhhhhhhhhhhhhhhhHHHhhcccCCh
Q 039167 357 KSMEERENLEKIGREITRKCKGLPLATKTIASLLRSK------NTEKEWQNILKSEIWEIEQVEKNLLAPLLLSYNELPS 430 (923)
Q Consensus 357 ~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~------~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~ 430 (923)
. ....+....|+++..|+|+.+..+-..+... .+...|..-..+ ....... +.+...+..-.+.||.
T Consensus 236 ~-----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~-i~~~~~~-~~vv~~l~~rl~kL~~ 308 (849)
T COG3899 236 K-----LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS-LGILATT-DAVVEFLAARLQKLPG 308 (849)
T ss_pred c-----cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh-cCCchhh-HHHHHHHHHHHhcCCH
Confidence 2 2234558899999999999999999888775 233444322111 1111112 2255668889999999
Q ss_pred hhHHHHhhhccCCCCcccChHHHHHHH
Q 039167 431 KVKQCFTYCAVFPKDVILKKDKLIELW 457 (923)
Q Consensus 431 ~~k~~fl~~s~fp~~~~i~~~~Li~~W 457 (923)
..+..+...||+...+ +.+.|-..|
T Consensus 309 ~t~~Vl~~AA~iG~~F--~l~~La~l~ 333 (849)
T COG3899 309 TTREVLKAAACIGNRF--DLDTLAALA 333 (849)
T ss_pred HHHHHHHHHHHhCccC--CHHHHHHHH
Confidence 9999999999997654 455444443
No 41
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.63 E-value=1.1e-07 Score=88.14 Aligned_cols=118 Identities=23% Similarity=0.222 Sum_probs=81.0
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccc---cccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHH
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVE---KNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKH 279 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 279 (923)
+.+++.|+|.+|+|||++++++.+..... ..-..++|+.+....+...+...++.+++.......+.+++...+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 45789999999999999999998842110 003456799988888999999999999998766656677777888888
Q ss_pred hcCCce-EEEecCCCCC-ChhhHHHhHHhhhcCCCCcEEEEEecc
Q 039167 280 VAGKKL-LLVLDDVWNE-NFHKWEQFNNCLKNCLYGSKILITTRK 322 (923)
Q Consensus 280 l~~kr~-LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~ 322 (923)
+...+. +||+|++..- +...++.+..... ..+.+||+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 866554 9999999544 3344445544433 556677777654
No 42
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.62 E-value=6.7e-07 Score=91.79 Aligned_cols=172 Identities=17% Similarity=0.125 Sum_probs=100.9
Q ss_pred chhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhC
Q 039167 182 RKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTG 261 (923)
Q Consensus 182 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 261 (923)
.+..++.+..++.. .....+.|+|+.|+|||+||+.+++. ........++++++.-.+. ...
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~~---~~~------- 83 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQA---DPE------- 83 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHHh---HHH-------
Confidence 34466777766532 24568999999999999999999884 3223334455554321110 001
Q ss_pred CCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCChh-h-HHHhHHhhhcC-CCCcEEEEEecchH---------HHHHh
Q 039167 262 CLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFH-K-WEQFNNCLKNC-LYGSKILITTRKEA---------VARIM 329 (923)
Q Consensus 262 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~-~-~~~l~~~l~~~-~~gs~iivTtR~~~---------v~~~~ 329 (923)
+...+.+ .-+|||||+..-... . .+.+...+... ..+.++|+||+... +...+
T Consensus 84 --------------~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 84 --------------VLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred --------------HHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 1111222 348999999654322 2 33455544331 23457899888532 22223
Q ss_pred cccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHHHHH
Q 039167 330 GSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTIASLL 390 (923)
Q Consensus 330 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l 390 (923)
.....+++.+++.++...++...+-...... -.+..+.+++.+.|.|..+..+...+
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~----~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRGLQL----PDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 3346899999999999998876542211111 12445677778899888777664443
No 43
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.59 E-value=5.1e-06 Score=94.92 Aligned_cols=182 Identities=14% Similarity=0.142 Sum_probs=115.3
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccc-------------------cccceE
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVE-------------------KNFEKR 237 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~ 237 (923)
.+++|.+..++.|.+++... .-.+.+.++|..|+||||+|+.+.+...-. +.|...
T Consensus 16 dEVIGQe~Vv~~L~~aL~~g-----RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGG-----RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 36899999999999998532 235677899999999999998876632111 111122
Q ss_pred EEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHH----hcCCceEEEecCCCCCChhhHHHhHHhhhcCCCC
Q 039167 238 IWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKH----VAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYG 313 (923)
Q Consensus 238 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 313 (923)
++++.+.... .++....+... ..++.-++|||++...+...+..+...+......
T Consensus 91 iEIDAas~rg---------------------VDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~ 149 (830)
T PRK07003 91 VEMDAASNRG---------------------VDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPH 149 (830)
T ss_pred EEeccccccc---------------------HHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCC
Confidence 3332222111 22222222211 2345568999999877777788888888766667
Q ss_pred cEEEEEecch-HHH-HHhcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCCh-HHHHHHHH
Q 039167 314 SKILITTRKE-AVA-RIMGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLP-LATKTIAS 388 (923)
Q Consensus 314 s~iivTtR~~-~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~~~ 388 (923)
.++|+||++. .+. .....+..++++.++.++..+.+.+.+...+-.. -.+....|++.++|.. -|+..+-.
T Consensus 150 v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i----d~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAF----EPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred eEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 7888877764 332 2224467899999999999998887653222111 1344678899998855 45555433
No 44
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.56 E-value=8.7e-07 Score=86.26 Aligned_cols=183 Identities=19% Similarity=0.225 Sum_probs=100.9
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAII 256 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 256 (923)
.+|+|.+.-++.+.-++..... .++.+.-+.+||++|+||||||+.+.+ +....|. +.+... .+-
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg~~-i~k-------- 88 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSGPA-IEK-------- 88 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEECCC---S--------
T ss_pred HHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHh--ccCCCeE---eccchh-hhh--------
Confidence 4799999888876555432111 234577889999999999999999999 4555553 222211 110
Q ss_pred HHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCC------CC-------------cEEE
Q 039167 257 EALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCL------YG-------------SKIL 317 (923)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~------~g-------------s~ii 317 (923)
..++...+.. + +++-+|.+|++..-+...-+.+..++.++. .| +-|=
T Consensus 89 ------------~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTlig 154 (233)
T PF05496_consen 89 ------------AGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIG 154 (233)
T ss_dssp ------------CHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEE
T ss_pred ------------HHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEee
Confidence 1111111111 2 245678889998776666666666655431 11 2244
Q ss_pred EEecchHHHHHhcc-c-ceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHHHHHcc
Q 039167 318 ITTRKEAVARIMGS-T-NIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTIASLLRS 392 (923)
Q Consensus 318 vTtR~~~v~~~~~~-~-~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~ 392 (923)
.|||...+...+.. . -+.+++..+.+|-.+...+.+..-+-. --++.+.+|+++|.|-|--+.-+-..++.
T Consensus 155 ATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~----i~~~~~~~Ia~rsrGtPRiAnrll~rvrD 227 (233)
T PF05496_consen 155 ATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIE----IDEDAAEEIARRSRGTPRIANRLLRRVRD 227 (233)
T ss_dssp EESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-E----E-HHHHHHHHHCTTTSHHHHHHHHHHHCC
T ss_pred eeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCC----cCHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 57886555443332 2 245899999999999998876433322 22456899999999999776666555543
No 45
>PTZ00202 tuzin; Provisional
Probab=98.54 E-value=2.1e-05 Score=83.70 Aligned_cols=166 Identities=16% Similarity=0.151 Sum_probs=106.2
Q ss_pred CccCCCCceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHH
Q 039167 171 VSSIDESEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFR 250 (923)
Q Consensus 171 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 250 (923)
..+.+...|+||++++..+...|...+. ...+++.|+|++|+|||||++.+..... + .+++.-.. +..+
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~----~--~qL~vNpr--g~eE 324 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG----M--PAVFVDVR--GTED 324 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC----c--eEEEECCC--CHHH
Confidence 3445667899999999999998864432 2456999999999999999999987422 1 13332222 6789
Q ss_pred HHHHHHHHHhCCCCCCcCHHHHHHHHHHHh-----c-CCceEEEecCCCCCChhhHHHhHH---hhhcCCCCcEEEEEec
Q 039167 251 IARAIIEALTGCLPNFVEFQSLMQHIQKHV-----A-GKKLLLVLDDVWNENFHKWEQFNN---CLKNCLYGSKILITTR 321 (923)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~-~kr~LlVlDdv~~~~~~~~~~l~~---~l~~~~~gs~iivTtR 321 (923)
+++.++.+|+... .....++.+.|.+.+ . +++.+||+-==.. .++..+.. .|.....-|.|++---
T Consensus 325 lLr~LL~ALGV~p--~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg---~~l~rvyne~v~la~drr~ch~v~evp 399 (550)
T PTZ00202 325 TLRSVVKALGVPN--VEACGDLLDFISEACRRAKKMNGETPLLVLKLREG---SSLQRVYNEVVALACDRRLCHVVIEVP 399 (550)
T ss_pred HHHHHHHHcCCCC--cccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCC---CcHHHHHHHHHHHHccchhheeeeeeh
Confidence 9999999999632 222234444444433 3 7778888753211 22232222 2223334567777655
Q ss_pred chHHHHH---hcccceEeCCCCChHHHHHHHHHh
Q 039167 322 KEAVARI---MGSTNIISVNVLSGMECWLVFESL 352 (923)
Q Consensus 322 ~~~v~~~---~~~~~~~~l~~L~~~~~~~lf~~~ 352 (923)
.+.+... ......|.++.++.++|.++-.+.
T Consensus 400 leslt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 400 LESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred HhhcchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 5443221 123467899999999999887664
No 46
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=4.6e-06 Score=91.41 Aligned_cols=182 Identities=15% Similarity=0.153 Sum_probs=110.2
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccc-------------------cceE
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKN-------------------FEKR 237 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~ 237 (923)
.+++|.+..++.+...+... .-...+.++|+.|+||||+|+.+.+...-... +...
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~-----~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~ 90 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLG-----RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDL 90 (363)
T ss_pred hhccChHHHHHHHHHHHHcC-----CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 36899999999998888542 23567899999999999999999773211000 1111
Q ss_pred EEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEE
Q 039167 238 IWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKIL 317 (923)
Q Consensus 238 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 317 (923)
.++..+...... ..+.+++.+.. ....+++-++|+|++...+...++.+...+.......++|
T Consensus 91 ~~~~~~~~~~v~-~ir~i~~~~~~----------------~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fI 153 (363)
T PRK14961 91 IEIDAASRTKVE-EMREILDNIYY----------------SPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFI 153 (363)
T ss_pred EEecccccCCHH-HHHHHHHHHhc----------------CcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEE
Confidence 122111111111 11111111100 0012456699999997766666777877777666666777
Q ss_pred EEecc-hHHHHH-hcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHH
Q 039167 318 ITTRK-EAVARI-MGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATK 384 (923)
Q Consensus 318 vTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 384 (923)
++|.+ ..+... .+....+++.+++.++..+.+...+-..+... -.+.+..|++.++|.|-.+.
T Consensus 154 l~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i----~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 154 LATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDT----DEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred EEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHH
Confidence 76654 333322 23457899999999999988877553322111 12346778999999885443
No 47
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=3.3e-06 Score=90.86 Aligned_cols=178 Identities=18% Similarity=0.160 Sum_probs=116.7
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcC----cccccccceEEEEE-eCCcccHHHHH
Q 039167 178 EIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNN----GDVEKNFEKRIWVC-VSDPFDEFRIA 252 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~----~~~~~~F~~~~wv~-~s~~~~~~~~~ 252 (923)
+++|.+...+.+...+... .-.+...++|+.|+||||+|+.+++. .....|.|...|.. .+......+ .
T Consensus 5 ~i~g~~~~~~~l~~~~~~~-----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-i 78 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKN-----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-I 78 (313)
T ss_pred hccCcHHHHHHHHHHHHcC-----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-H
Confidence 5789888899999988543 24568899999999999999888763 11234566655544 222233322 2
Q ss_pred HHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecchHHH-H-Hhc
Q 039167 253 RAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRKEAVA-R-IMG 330 (923)
Q Consensus 253 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~-~-~~~ 330 (923)
+++.+.+... -..+++-++|+|++...+...+..+...+.....++.+|++|.+.+.. . ...
T Consensus 79 r~~~~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~S 142 (313)
T PRK05564 79 RNIIEEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKS 142 (313)
T ss_pred HHHHHHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHh
Confidence 2222222111 123456677777776666678999999998877889999888765322 1 123
Q ss_pred ccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHH
Q 039167 331 STNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKT 385 (923)
Q Consensus 331 ~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 385 (923)
....+++.++++++....+..... +. . .+.+..++..++|.|.-+..
T Consensus 143 Rc~~~~~~~~~~~~~~~~l~~~~~-~~---~----~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 143 RCQIYKLNRLSKEEIEKFISYKYN-DI---K----EEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred hceeeeCCCcCHHHHHHHHHHHhc-CC---C----HHHHHHHHHHcCCCHHHHHH
Confidence 467999999999999887765431 11 1 12266788899998876543
No 48
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=1.9e-08 Score=104.78 Aligned_cols=16 Identities=25% Similarity=0.227 Sum_probs=9.1
Q ss_pred CCCCCCcEEEeeecCC
Q 039167 744 PPPNLKELWINKYRGK 759 (923)
Q Consensus 744 ~~~~L~~L~l~~~~~~ 759 (923)
.+++|+.|++..|...
T Consensus 299 ~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 299 TFPKLEYLNISENNIR 314 (505)
T ss_pred ccccceeeecccCccc
Confidence 3456666666665543
No 49
>PF13173 AAA_14: AAA domain
Probab=98.51 E-value=5.8e-07 Score=82.58 Aligned_cols=120 Identities=23% Similarity=0.238 Sum_probs=79.3
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGK 283 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 283 (923)
.+++.|.|+.|+||||++++++.+.. ....+++++..+......... + ..+.+.+....+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~----------------~-~~~~~~~~~~~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADP----------------D-LLEYFLELIKPG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhh----------------h-hHHHHHHhhccC
Confidence 36899999999999999999987422 334566776655333111000 0 222333334447
Q ss_pred ceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecchHHHHH------hcccceEeCCCCChHHH
Q 039167 284 KLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRKEAVARI------MGSTNIISVNVLSGMEC 345 (923)
Q Consensus 284 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~------~~~~~~~~l~~L~~~~~ 345 (923)
+.+|+||++... .+|......+-+..+..+|++|+........ .|....+++.||+-.|.
T Consensus 62 ~~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 889999999654 5677766666665566799999998665532 13345789999988774
No 50
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.51 E-value=9.8e-08 Score=107.10 Aligned_cols=198 Identities=32% Similarity=0.330 Sum_probs=129.1
Q ss_pred EEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCC-CCcEEeccCCCCccccchhhhCCCCCc
Q 039167 535 SLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLL-HLKYLNLANQMEIERLPETLCELYNLE 613 (923)
Q Consensus 535 ~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~-~L~~L~L~~~~~l~~lp~~i~~L~~L~ 613 (923)
.+....+..... ...+..+..+..|++.++. +..+|...+.+. +|++|++++|. +..+|..++.+++|+
T Consensus 97 ~l~~~~~~~~~~--~~~~~~~~~l~~L~l~~n~-------i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~ 166 (394)
T COG4886 97 SLDLNLNRLRSN--ISELLELTNLTSLDLDNNN-------ITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLK 166 (394)
T ss_pred eeeccccccccC--chhhhcccceeEEecCCcc-------cccCccccccchhhcccccccccc-hhhhhhhhhcccccc
Confidence 455555543121 2224556788999998665 788888788775 89999999998 888887799999999
Q ss_pred EEecCCCccccccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEecccCCcccccccccCCCCCCCceEe
Q 039167 614 HLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLNLLRDCRIR 693 (923)
Q Consensus 614 ~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~ 693 (923)
.|+++.|. +..+|...+.+++|+.|++++| .+..+|..++.+..|++|.+..+.... .+..+.
T Consensus 167 ~L~l~~N~-l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~----~~~~~~----------- 229 (394)
T COG4886 167 NLDLSFND-LSDLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNSIIE----LLSSLS----------- 229 (394)
T ss_pred ccccCCch-hhhhhhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCccee----cchhhh-----------
Confidence 99999987 8889888778999999999988 677888776666677777665442110 111111
Q ss_pred CCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCccccccccc
Q 039167 694 GLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKNWIMSLTN 773 (923)
Q Consensus 694 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~ 773 (923)
.+.++..+.+..+.+. ..+..+..+++++.|+++++.... + +. +..+.+
T Consensus 230 -----------------~~~~l~~l~l~~n~~~----------~~~~~~~~l~~l~~L~~s~n~i~~--i-~~-~~~~~~ 278 (394)
T COG4886 230 -----------------NLKNLSGLELSNNKLE----------DLPESIGNLSNLETLDLSNNQISS--I-SS-LGSLTN 278 (394)
T ss_pred -----------------hcccccccccCCceee----------eccchhccccccceeccccccccc--c-cc-ccccCc
Confidence 1222222222222210 113344556667777777777666 4 32 666777
Q ss_pred ccEEeEeCCCCCCCCCC
Q 039167 774 LRFLGLHEWRNCEHLPP 790 (923)
Q Consensus 774 L~~L~L~~~~~~~~l~~ 790 (923)
|+.|+++++.....++.
T Consensus 279 l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 279 LRELDLSGNSLSNALPL 295 (394)
T ss_pred cCEEeccCccccccchh
Confidence 77777777655554444
No 51
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.49 E-value=3.9e-06 Score=92.01 Aligned_cols=198 Identities=13% Similarity=0.044 Sum_probs=109.4
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccc-eEEEEEeCCcccH--HHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFE-KRIWVCVSDPFDE--FRIAR 253 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~--~~~~~ 253 (923)
.+++|++..++.+..++... ..+.+.++|+.|+||||+|+.+.+... ...+. ..+.+++++-.+. ..+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVE 87 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhc
Confidence 45889999999998888532 344678999999999999999887321 11222 2334444321100 00000
Q ss_pred --HHHHHHhCC-CCCCcCHHHHHHHHHHHh-----cCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecch-H
Q 039167 254 --AIIEALTGC-LPNFVEFQSLMQHIQKHV-----AGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRKE-A 324 (923)
Q Consensus 254 --~i~~~l~~~-~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~ 324 (923)
.....++.. .......+.....+.... .+.+-+||+||+..........+...+......+++|+||... .
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 000000000 000011122222222211 2445589999996554444556666665555567788877543 2
Q ss_pred HHHHh-cccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHH
Q 039167 325 VARIM-GSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKT 385 (923)
Q Consensus 325 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 385 (923)
+...+ .....+++.+++.++...++...+-..+... -.+....+++.++|.+-.+..
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~----~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDY----DDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 22222 2345788999999999888887653322111 134577888888887655543
No 52
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.48 E-value=1.2e-07 Score=90.57 Aligned_cols=129 Identities=26% Similarity=0.252 Sum_probs=49.9
Q ss_pred ccccCCceEEEeCCCCCCCccchHHhh-cCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchh
Q 039167 527 IEALRGLRSLLLESTKHSSVILPQLFD-KLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPET 605 (923)
Q Consensus 527 ~~~~~~Lr~L~l~~~~~~~~~l~~~~~-~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~ 605 (923)
..+..+++.|++.++.++.+. . +. .+.+|++|+|++|. +..++ .+..+++|+.|++++|. ++.+++.
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie--~-L~~~l~~L~~L~Ls~N~-------I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~ 82 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE--N-LGATLDKLEVLDLSNNQ-------ITKLE-GLPGLPRLKTLDLSNNR-ISSISEG 82 (175)
T ss_dssp -----------------------S---TT-TT--EEE-TTS---------S--T-T----TT--EEE--SS----S-CHH
T ss_pred ccccccccccccccccccccc--c-hhhhhcCCCEEECCCCC-------Ccccc-CccChhhhhhcccCCCC-CCccccc
Confidence 344557789999999876642 2 33 57889999999776 66664 47778999999999998 8888765
Q ss_pred h-hCCCCCcEEecCCCccccccC--ccccCCCCCCEEeCCCCcccccCCc----CCCCCCCCCcCCceEec
Q 039167 606 L-CELYNLEHLNVNCCVKLRELP--QGIGRLRKLMYLDNECTVSLRYLPV----GIGKLIRLRRVKEFVVG 669 (923)
Q Consensus 606 i-~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p~----~i~~L~~L~~L~~~~~~ 669 (923)
+ ..+++|++|++++|. +..+- ..+..+++|++|++.+|+. ...+. .+..+++|+.|+...+.
T Consensus 83 l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv-~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPV-CEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp HHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GG-GGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred hHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcc-cchhhHHHHHHHHcChhheeCCEEcc
Confidence 5 468999999999887 65543 3466789999999998843 33231 24567777777765544
No 53
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=6.5e-06 Score=93.08 Aligned_cols=178 Identities=15% Similarity=0.165 Sum_probs=113.3
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccc-------------------cccceE
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVE-------------------KNFEKR 237 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~ 237 (923)
.+++|.+...+.|..++... .-.+.+.++|+.|+||||+|+.+.+...-. +.|...
T Consensus 15 ddVIGQe~vv~~L~~aI~~g-----rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDv 89 (702)
T PRK14960 15 NELVGQNHVSRALSSALERG-----RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDL 89 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCce
Confidence 36899999999999998643 235788999999999999999887631110 011112
Q ss_pred EEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHH----HhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCC
Q 039167 238 IWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQK----HVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYG 313 (923)
Q Consensus 238 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 313 (923)
+.+..+... ..++....+.. -..+++-++|+|++...+......+...+.....+
T Consensus 90 iEIDAAs~~---------------------~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~ 148 (702)
T PRK14960 90 IEIDAASRT---------------------KVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEH 148 (702)
T ss_pred EEecccccC---------------------CHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 222222111 12222222211 12356679999999877767778888888766666
Q ss_pred cEEEEEecch-HHH-HHhcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHH
Q 039167 314 SKILITTRKE-AVA-RIMGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATK 384 (923)
Q Consensus 314 s~iivTtR~~-~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 384 (923)
.++|++|.+. .+. ........+++++++.++..+.+.+.+-..+.... .+....|++.++|.+-.+.
T Consensus 149 v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id----~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 149 VKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD----QDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred cEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 7777777653 232 22345679999999999999888776533222111 2346778999999774443
No 54
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=6.3e-06 Score=96.16 Aligned_cols=182 Identities=15% Similarity=0.169 Sum_probs=113.6
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccc-------------------cceE
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKN-------------------FEKR 237 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~ 237 (923)
.+++|.+..++.|.+++... .-...+.++|+.|+||||+|+.+++...-... |.-.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~-----rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQ-----RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhC-----CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 36899999999998888542 23456789999999999999999874211100 1111
Q ss_pred EEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHH-HHhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEE
Q 039167 238 IWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQ-KHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKI 316 (923)
Q Consensus 238 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 316 (923)
+++..+....+.. .+.|.+ .+. ....+++-++|||++...+....+.+...+.......++
T Consensus 91 iEidAas~~kVDd-IReLie-----------------~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrF 152 (944)
T PRK14949 91 IEVDAASRTKVDD-TRELLD-----------------NVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKF 152 (944)
T ss_pred EEeccccccCHHH-HHHHHH-----------------HHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEE
Confidence 2222111111111 122221 111 112467789999999887777888888888765556666
Q ss_pred EEEecc-hHHHHH-hcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHH
Q 039167 317 LITTRK-EAVARI-MGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKT 385 (923)
Q Consensus 317 ivTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 385 (923)
|++|.+ ..+... ......|++++|+.++..+.+.+.+-..+.. .-.+....|++.++|.|--+..
T Consensus 153 ILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~----~edeAL~lIA~~S~Gd~R~ALn 219 (944)
T PRK14949 153 LLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLP----FEAEALTLLAKAANGSMRDALS 219 (944)
T ss_pred EEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHH
Confidence 665554 444322 3446799999999999999888755321111 1123467899999998854433
No 55
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.46 E-value=1.1e-08 Score=105.95 Aligned_cols=90 Identities=17% Similarity=0.149 Sum_probs=48.7
Q ss_pred CCceEEEeCCCCCCCc-cchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCcccc--chhhh
Q 039167 531 RGLRSLLLESTKHSSV-ILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERL--PETLC 607 (923)
Q Consensus 531 ~~Lr~L~l~~~~~~~~-~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~l--p~~i~ 607 (923)
..|+.|.+.++..... .+..+-.+++++..|.+.+|. .++.... -+.-..+.+|++|+|..|..++.. -.-..
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~-~iTd~s~---~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK-KITDSSL---LSLARYCRKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcce-eccHHHH---HHHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence 3567777777653322 234445678888888777665 1111111 111234666777777766544422 12233
Q ss_pred CCCCCcEEecCCCcccc
Q 039167 608 ELYNLEHLNVNCCVKLR 624 (923)
Q Consensus 608 ~L~~L~~L~L~~~~~l~ 624 (923)
.+++|++|+++.|..+.
T Consensus 214 gC~kL~~lNlSwc~qi~ 230 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQIS 230 (483)
T ss_pred hhhhHHHhhhccCchhh
Confidence 56666666666665443
No 56
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=8.9e-07 Score=99.98 Aligned_cols=198 Identities=15% Similarity=0.113 Sum_probs=114.3
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHH
Q 039167 178 EIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIE 257 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 257 (923)
+++|.+...+.|..++... .-...+.++|++|+||||+|+.+++...-.+.+...+|.+.+... +......-+.
T Consensus 15 dvvGq~~v~~~L~~~i~~~-----~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv~ 88 (504)
T PRK14963 15 EVVGQEHVKEVLLAALRQG-----RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDVL 88 (504)
T ss_pred HhcChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCceE
Confidence 5899998888888888543 234677999999999999999987742211222222232221100 0000000000
Q ss_pred HHhCCCCCCcCHHHHHHHHHHH-----hcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEec-chHHHHHh-c
Q 039167 258 ALTGCLPNFVEFQSLMQHIQKH-----VAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTR-KEAVARIM-G 330 (923)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR-~~~v~~~~-~ 330 (923)
.+.. ......+.... +.+. ..+++-++|+|+++..+...+..+...+........+|++|. ...+...+ .
T Consensus 89 el~~--~~~~~vd~iR~-l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~S 165 (504)
T PRK14963 89 EIDA--ASNNSVEDVRD-LREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILS 165 (504)
T ss_pred Eecc--cccCCHHHHHH-HHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhc
Confidence 0000 00111222211 2221 235667999999987766778888888776555556555554 33433222 3
Q ss_pred ccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHH-HHHHH
Q 039167 331 STNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLAT-KTIAS 388 (923)
Q Consensus 331 ~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai-~~~~~ 388 (923)
....+++.+++.++..+.+.+.+-..+-.. -.+....|++.++|.+--+ ..+-.
T Consensus 166 Rc~~~~f~~ls~~el~~~L~~i~~~egi~i----~~~Al~~ia~~s~GdlR~aln~Lek 220 (504)
T PRK14963 166 RTQHFRFRRLTEEEIAGKLRRLLEAEGREA----EPEALQLVARLADGAMRDAESLLER 220 (504)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 467899999999999999988664322211 1234778999999988544 43333
No 57
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.45 E-value=3.5e-08 Score=97.41 Aligned_cols=133 Identities=21% Similarity=0.206 Sum_probs=72.8
Q ss_pred CCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCcccccccccccEEeEeCCCCCCCCCC
Q 039167 711 KKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRNCEHLPP 790 (923)
Q Consensus 711 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~ 790 (923)
..+.|+.|++++|.+ .++-++....|.++.|+++.|.... + . -+..+++|+.|+|++|...+...+
T Consensus 282 TWq~LtelDLS~N~I----------~~iDESvKL~Pkir~L~lS~N~i~~--v-~-nLa~L~~L~~LDLS~N~Ls~~~Gw 347 (490)
T KOG1259|consen 282 TWQELTELDLSGNLI----------TQIDESVKLAPKLRRLILSQNRIRT--V-Q-NLAELPQLQLLDLSGNLLAECVGW 347 (490)
T ss_pred hHhhhhhccccccch----------hhhhhhhhhccceeEEeccccceee--e-h-hhhhcccceEeecccchhHhhhhh
Confidence 345566666666653 2444555666677777777666655 3 2 255666777777777654433333
Q ss_pred CCCCCCccceeccCCcCceEeCccccCCCCCCCCcccccCcccceeeccccccccccccccc-cccccccCcccceeeec
Q 039167 791 LGKLPSLESLYIAGMKSVKRVGNEFLGVESDMDGSSVIAFAKLKKLTFYIMEELEEWDLGTA-IKGEIIIMPRLSSLTIW 869 (923)
Q Consensus 791 l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~-~~~~~~~lp~L~~L~l~ 869 (923)
-.+|-|.+.|.|.+|. ++.+. ++.+|-.|.-. +++++.+... --..++++|+|+.+.+.
T Consensus 348 h~KLGNIKtL~La~N~-iE~LS----------------GL~KLYSLvnL---Dl~~N~Ie~ldeV~~IG~LPCLE~l~L~ 407 (490)
T KOG1259|consen 348 HLKLGNIKTLKLAQNK-IETLS----------------GLRKLYSLVNL---DLSSNQIEELDEVNHIGNLPCLETLRLT 407 (490)
T ss_pred HhhhcCEeeeehhhhh-Hhhhh----------------hhHhhhhheec---cccccchhhHHHhcccccccHHHHHhhc
Confidence 4455666666666655 33221 22222222221 2333332211 01246789999999999
Q ss_pred ccccCCCCC
Q 039167 870 SCRKLKALP 878 (923)
Q Consensus 870 ~c~~l~~lp 878 (923)
+||. ..+|
T Consensus 408 ~NPl-~~~v 415 (490)
T KOG1259|consen 408 GNPL-AGSV 415 (490)
T ss_pred CCCc-cccc
Confidence 9984 4444
No 58
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.45 E-value=1.7e-06 Score=82.01 Aligned_cols=124 Identities=18% Similarity=0.151 Sum_probs=73.4
Q ss_pred ecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHH
Q 039167 180 FGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEAL 259 (923)
Q Consensus 180 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 259 (923)
+|++..+..+...+... ..+.+.|+|++|+||||+++.+++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 47888889998888542 456889999999999999999998422 222345566555433322211111000
Q ss_pred hCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcC------CCCcEEEEEecch
Q 039167 260 TGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNC------LYGSKILITTRKE 323 (923)
Q Consensus 260 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~------~~gs~iivTtR~~ 323 (923)
............++.+||+||++.........+...+... ..+..||+||...
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 0111122233457889999999754222333444444332 3577888888864
No 59
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=4.3e-05 Score=82.72 Aligned_cols=206 Identities=15% Similarity=0.165 Sum_probs=129.4
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccc--eEEEEEeCCcccHHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFE--KRIWVCVSDPFDEFRIARA 254 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~s~~~~~~~~~~~ 254 (923)
..+.+|+++++++...|...-. +....-+.|+|..|+|||+.++.+.+. +..... .+++|++-...+..+++..
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~i~~~ 92 (366)
T COG1474 17 EELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQVLSK 92 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHHHHHH
Confidence 3489999999999988764432 223334999999999999999999984 433322 1688999899999999999
Q ss_pred HHHHHhCCCCCCcCHHHHHHHHHHHhc--CCceEEEecCCCCCChhhHHHhHHhhhcCCC-CcEEEE--EecchHHHHHh
Q 039167 255 IIEALTGCLPNFVEFQSLMQHIQKHVA--GKKLLLVLDDVWNENFHKWEQFNNCLKNCLY-GSKILI--TTRKEAVARIM 329 (923)
Q Consensus 255 i~~~l~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~-gs~iiv--TtR~~~v~~~~ 329 (923)
|+.+++..+.......+....+.+.+. ++.+++|||++..-....-+.+...+..... .++|++ .+-+......+
T Consensus 93 i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 93 ILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred HHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHh
Confidence 999998554445556666777777764 6899999999944221111445555554432 454433 33333332222
Q ss_pred cc-------cceEeCCCCChHHHHHHHHHhhcCCC-CccchhhHHHHHHHHHHhcC-CChHHHHHH
Q 039167 330 GS-------TNIISVNVLSGMECWLVFESLAFVGK-SMEERENLEKIGREITRKCK-GLPLATKTI 386 (923)
Q Consensus 330 ~~-------~~~~~l~~L~~~~~~~lf~~~a~~~~-~~~~~~~~~~~~~~i~~~c~-GlPLai~~~ 386 (923)
.. ...+...|-+.++-...+..++-.+- .....++.-+++..++..-+ -.-.|+..+
T Consensus 173 d~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 173 DPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 11 22477888888888888887763221 11223333334444444444 444555444
No 60
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.43 E-value=1.1e-05 Score=90.76 Aligned_cols=193 Identities=14% Similarity=0.110 Sum_probs=112.6
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccce-EEEEEeCCcccHHHHHHHHH
Q 039167 178 EIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEK-RIWVCVSDPFDEFRIARAII 256 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~~i~ 256 (923)
+++|.+..+..+...+... .-.+.+.++|+.|+||||+|+.+++...-...... ..+..... -.....+.
T Consensus 22 dliGq~~vv~~L~~ai~~~-----ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~----C~~C~~i~ 92 (507)
T PRK06645 22 ELQGQEVLVKVLSYTILND-----RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQ----CTNCISFN 92 (507)
T ss_pred HhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCC----ChHHHHHh
Confidence 5889999999888877532 23467899999999999999999774211110000 00000000 00000000
Q ss_pred HHHhC-----CCCCCcCHHHHHHHHHH----HhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEE-EecchHHH
Q 039167 257 EALTG-----CLPNFVEFQSLMQHIQK----HVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILI-TTRKEAVA 326 (923)
Q Consensus 257 ~~l~~-----~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-TtR~~~v~ 326 (923)
..... ........+++...+.. -+.+++-++|+|+++..+...++.+...+......+.+|+ ||+...+.
T Consensus 93 ~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~ 172 (507)
T PRK06645 93 NHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIP 172 (507)
T ss_pred cCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhh
Confidence 00000 00011122232222222 1346777999999988777788888888876665666654 55555554
Q ss_pred HHh-cccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHH
Q 039167 327 RIM-GSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLAT 383 (923)
Q Consensus 327 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 383 (923)
..+ .....+++.+++.++....+...+-..+.... .+....|++.++|.+--+
T Consensus 173 ~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie----~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 173 ATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD----IEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 433 34568999999999999999887643222111 234567888999977444
No 61
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=6e-06 Score=93.13 Aligned_cols=180 Identities=14% Similarity=0.165 Sum_probs=113.2
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccc------------------------c
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVE------------------------K 232 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------------------------~ 232 (923)
.++||.+..++.|.+++... .-...+.++|..|+||||+|+.+.+...-. +
T Consensus 16 ddVIGQe~vv~~L~~al~~g-----RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQ-----RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAG 90 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhC-----CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcC
Confidence 36899999999999998643 235678899999999999999886631110 0
Q ss_pred ccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHH----hcCCceEEEecCCCCCChhhHHHhHHhhh
Q 039167 233 NFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKH----VAGKKLLLVLDDVWNENFHKWEQFNNCLK 308 (923)
Q Consensus 233 ~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 308 (923)
.|...++++.+.. ...++..+.+... ..++.-++|||++...+...++.+...+.
T Consensus 91 ~hpDviEIdAas~---------------------~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLE 149 (700)
T PRK12323 91 RFVDYIEMDAASN---------------------RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLE 149 (700)
T ss_pred CCCcceEeccccc---------------------CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhc
Confidence 0111122222111 1233333322221 24566799999998877777888887776
Q ss_pred cCCCCcEEEEEe-cchHHHHH-hcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHH
Q 039167 309 NCLYGSKILITT-RKEAVARI-MGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTI 386 (923)
Q Consensus 309 ~~~~gs~iivTt-R~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 386 (923)
.-....++|++| ....+... ...+..++++.++.++..+.+.+.+...+.... .+....|++.++|.|.-...+
T Consensus 150 EPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d----~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 150 EPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE----VNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred cCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 655555655544 44444432 344679999999999999888765532221111 234578899999998655443
No 62
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.43 E-value=6.3e-08 Score=92.46 Aligned_cols=107 Identities=23% Similarity=0.275 Sum_probs=37.1
Q ss_pred hhcCCcccEEeccccCCccccccccccccccc-CCCCCcEEeccCCCCccccchhhhCCCCCcEEecCCCccccccCccc
Q 039167 552 FDKLTCLRALKLEVHNERLPEDFIKEVPTNIE-KLLHLKYLNLANQMEIERLPETLCELYNLEHLNVNCCVKLRELPQGI 630 (923)
Q Consensus 552 ~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~-~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i 630 (923)
+.+...+|.|+|.+|. +..+ +.++ .+.+|+.|+|++|. +..++. +..|++|++|++++|. ++.++..+
T Consensus 15 ~~n~~~~~~L~L~~n~-------I~~I-e~L~~~l~~L~~L~Ls~N~-I~~l~~-l~~L~~L~~L~L~~N~-I~~i~~~l 83 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQ-------ISTI-ENLGATLDKLEVLDLSNNQ-ITKLEG-LPGLPRLKTLDLSNNR-ISSISEGL 83 (175)
T ss_dssp -----------------------------S--TT-TT--EEE-TTS---S--TT-----TT--EEE--SS----S-CHHH
T ss_pred cccccccccccccccc-------cccc-cchhhhhcCCCEEECCCCC-CccccC-ccChhhhhhcccCCCC-CCccccch
Confidence 4566788999999776 5554 3455 57899999999999 988875 8889999999999998 88887666
Q ss_pred c-CCCCCCEEeCCCCcccccCC--cCCCCCCCCCcCCceEecc
Q 039167 631 G-RLRKLMYLDNECTVSLRYLP--VGIGKLIRLRRVKEFVVGG 670 (923)
Q Consensus 631 ~-~L~~L~~L~l~~~~~l~~~p--~~i~~L~~L~~L~~~~~~~ 670 (923)
. .+++|++|++++| .+..+- ..++.+++|+.|++..++.
T Consensus 84 ~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 84 DKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp HHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred HHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcc
Confidence 4 6899999999988 444332 2234555565555544433
No 63
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.42 E-value=3.6e-07 Score=90.54 Aligned_cols=47 Identities=30% Similarity=0.456 Sum_probs=32.2
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcC
Q 039167 178 EIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.|+||+++++++...+... .....+.+.|+|++|+|||+|.++++..
T Consensus 1 ~fvgR~~e~~~l~~~l~~~---~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAA---QSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp --TT-HHHHHHHHHTTGGT---SS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH---HcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999522 2346789999999999999999999884
No 64
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=1.1e-05 Score=91.33 Aligned_cols=185 Identities=17% Similarity=0.158 Sum_probs=113.5
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCccc-------------------ccccceE
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDV-------------------EKNFEKR 237 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------------~~~F~~~ 237 (923)
.+++|.+..++.+...+... .-...+.++|+.|+||||+|+.+++...- ...|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~-----rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQ-----KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 36889999999999888542 24466889999999999999998762110 0112223
Q ss_pred EEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHH-HhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEE
Q 039167 238 IWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQK-HVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKI 316 (923)
Q Consensus 238 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 316 (923)
+++.........+ ..++...+.. -..+++-++|+|++...+...++.+...+......+.+
T Consensus 91 ieidaas~~gvd~------------------ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 91 IEIDAASRTGVEE------------------TKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred EEeecccccCHHH------------------HHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 3332222222111 1122222221 13466779999999777777788888888776556666
Q ss_pred EE-EecchHHHHH-hcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCCh-HHHHHHHH
Q 039167 317 LI-TTRKEAVARI-MGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLP-LATKTIAS 388 (923)
Q Consensus 317 iv-TtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~~~ 388 (923)
|+ ||....+... ......+++++++.++....+.+.+-..+-.. -.+....|++.++|.+ -|+..+-.
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~----e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINS----DEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 65 4444444422 34467999999999998877776442211111 1234577899999966 45555443
No 65
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.41 E-value=6.4e-05 Score=87.74 Aligned_cols=202 Identities=18% Similarity=0.136 Sum_probs=118.3
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCccccccc---ceEEEEEeCCc---ccHHHH
Q 039167 178 EIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNF---EKRIWVCVSDP---FDEFRI 251 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~~---~~~~~~ 251 (923)
+++|++..+..+.+.+.. .....+.|+|++|+||||+|+.+++.......+ ...-|+.+... .+...+
T Consensus 155 ~iiGqs~~~~~l~~~ia~------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i 228 (615)
T TIGR02903 155 EIVGQERAIKALLAKVAS------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREV 228 (615)
T ss_pred hceeCcHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHH
Confidence 588999999988877742 245679999999999999999998754332222 12335544321 122222
Q ss_pred HHHH---------------HHHHhCCC----------------CCCcC-HHHHHHHHHHHhcCCceEEEecCCCCCChhh
Q 039167 252 ARAI---------------IEALTGCL----------------PNFVE-FQSLMQHIQKHVAGKKLLLVLDDVWNENFHK 299 (923)
Q Consensus 252 ~~~i---------------~~~l~~~~----------------~~~~~-~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~ 299 (923)
...+ +...+... .+... ....+..+.+.++++++.++-|+.|..+...
T Consensus 229 ~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~ 308 (615)
T TIGR02903 229 TNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNV 308 (615)
T ss_pred hHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCccc
Confidence 1111 11111000 00111 1235677888888999999988888776677
Q ss_pred HHHhHHhhhcCCCCcEEEE--EecchHH-HHHh-cccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHh
Q 039167 300 WEQFNNCLKNCLYGSKILI--TTRKEAV-ARIM-GSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRK 375 (923)
Q Consensus 300 ~~~l~~~l~~~~~gs~iiv--TtR~~~v-~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~ 375 (923)
|+.+...+....+...|++ ||++... ...+ .....+.+.+++.++.+.++.+.+-.... ... .++.+.|.+.
T Consensus 309 ~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v-~ls---~eal~~L~~y 384 (615)
T TIGR02903 309 PKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV-HLA---AGVEELIARY 384 (615)
T ss_pred chhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHC
Confidence 8888877776665555555 5664321 1111 23457789999999999999886532111 111 2334445554
Q ss_pred cCCChHHHHHHHHH
Q 039167 376 CKGLPLATKTIASL 389 (923)
Q Consensus 376 c~GlPLai~~~~~~ 389 (923)
+..-+-|+..++..
T Consensus 385 s~~gRraln~L~~~ 398 (615)
T TIGR02903 385 TIEGRKAVNILADV 398 (615)
T ss_pred CCcHHHHHHHHHHH
Confidence 44335555544433
No 66
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.41 E-value=1.3e-08 Score=105.30 Aligned_cols=310 Identities=18% Similarity=0.174 Sum_probs=172.5
Q ss_pred CcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccc--cchhhhCCCCCcEEecCCCccccccC--cccc
Q 039167 556 TCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIER--LPETLCELYNLEHLNVNCCVKLRELP--QGIG 631 (923)
Q Consensus 556 ~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~--lp~~i~~L~~L~~L~L~~~~~l~~lp--~~i~ 631 (923)
..||.|.+.++. ......+-..-.++++++.|++.+|..++. +-+.-..+++|++|++..|..++..- .-..
T Consensus 138 g~lk~LSlrG~r----~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 138 GFLKELSLRGCR----AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred cccccccccccc----cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence 357888888776 333334434445667777778877765542 22223467788888888877665421 1223
Q ss_pred CCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEecccCCcccccccccCCCCCCCceEeCCCCCCChhhhHHhhcCC
Q 039167 632 RLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLNLLRDCRIRGLGDVSDVDEARRAELEK 711 (923)
Q Consensus 632 ~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~ 711 (923)
-+++|.+|+++.|..+.. .+++. ....++. ++.+...++...+ .+++...-..
T Consensus 214 gC~kL~~lNlSwc~qi~~--------~gv~~--------------~~rG~~~---l~~~~~kGC~e~~--le~l~~~~~~ 266 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISG--------NGVQA--------------LQRGCKE---LEKLSLKGCLELE--LEALLKAAAY 266 (483)
T ss_pred hhhhHHHhhhccCchhhc--------CcchH--------------Hhccchh---hhhhhhccccccc--HHHHHHHhcc
Confidence 467788888877743332 11111 1111121 2222112222111 1222222223
Q ss_pred CCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCcccc-cccccccEEeEeCCCCCCCC--
Q 039167 712 KKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKNWI-MSLTNLRFLGLHEWRNCEHL-- 788 (923)
Q Consensus 712 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~-~~l~~L~~L~L~~~~~~~~l-- 788 (923)
+.-+..+++..+. ..++..+...-..+..|+.|..+++....+.. -..+ .+.++|+.|.++.|+...+.
T Consensus 267 ~~~i~~lnl~~c~-------~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~-l~aLg~~~~~L~~l~l~~c~~fsd~~f 338 (483)
T KOG4341|consen 267 CLEILKLNLQHCN-------QLTDEDLWLIACGCHALQVLCYSSCTDITDEV-LWALGQHCHNLQVLELSGCQQFSDRGF 338 (483)
T ss_pred ChHhhccchhhhc-------cccchHHHHHhhhhhHhhhhcccCCCCCchHH-HHHHhcCCCceEEEeccccchhhhhhh
Confidence 3344455544443 12233444444556778888887766533211 1112 26788999999988765443
Q ss_pred CCCC-CCCCccceeccCCcCceEeCccccCCCCCCCCcccccCcccceeeccccccccccccccccccccccCcccceee
Q 039167 789 PPLG-KLPSLESLYIAGMKSVKRVGNEFLGVESDMDGSSVIAFAKLKKLTFYIMEELEEWDLGTAIKGEIIIMPRLSSLT 867 (923)
Q Consensus 789 ~~l~-~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~lp~L~~L~ 867 (923)
..++ +.+.|+.+++.+|..+... ++.... ...|.|+.|.+.+|..+++-.+. .+...-..+..|+.++
T Consensus 339 t~l~rn~~~Le~l~~e~~~~~~d~--tL~sls--------~~C~~lr~lslshce~itD~gi~-~l~~~~c~~~~l~~lE 407 (483)
T KOG4341|consen 339 TMLGRNCPHLERLDLEECGLITDG--TLASLS--------RNCPRLRVLSLSHCELITDEGIR-HLSSSSCSLEGLEVLE 407 (483)
T ss_pred hhhhcCChhhhhhcccccceehhh--hHhhhc--------cCCchhccCChhhhhhhhhhhhh-hhhhccccccccceee
Confidence 2233 5788888888887643322 122221 26888999999888665544211 0111234678899999
Q ss_pred ecccccCCC-CCcCCCCCCCccEEEeccCCchhhhhhccCCCCCCCcccCCCCccc
Q 039167 868 IWSCRKLKA-LPDHLLQKSTLQKLEIWGGCHILQERYREETGEDWPNIRHIPKISI 922 (923)
Q Consensus 868 l~~c~~l~~-lp~~l~~l~sL~~L~l~~~c~~l~~~~~~~~~~~~~~i~hip~i~~ 922 (923)
+.+||.+.. .-+.+..+++|+.+++ .+|-..++.-.. +-..|.|++++
T Consensus 408 L~n~p~i~d~~Le~l~~c~~Leri~l-~~~q~vtk~~i~------~~~~~lp~i~v 456 (483)
T KOG4341|consen 408 LDNCPLITDATLEHLSICRNLERIEL-IDCQDVTKEAIS------RFATHLPNIKV 456 (483)
T ss_pred ecCCCCchHHHHHHHhhCcccceeee-echhhhhhhhhH------HHHhhCcccee
Confidence 999997653 3355677889999999 899877653322 23456666653
No 67
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.39 E-value=1e-07 Score=96.82 Aligned_cols=97 Identities=22% Similarity=0.279 Sum_probs=63.6
Q ss_pred cccccccCCceEEEeCCCCCCCc---cchHHhhcCCcccEEeccccCCccccccccccccc-------ccCCCCCcEEec
Q 039167 524 YDNIEALRGLRSLLLESTKHSSV---ILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTN-------IEKLLHLKYLNL 593 (923)
Q Consensus 524 ~~~~~~~~~Lr~L~l~~~~~~~~---~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~-------i~~l~~L~~L~L 593 (923)
......+..++.+++++|.+..- .+...+.+.+.||.-+++.-- .+....++|+. +-..++|++|||
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~f---tGR~~~Ei~e~L~~l~~aL~~~~~L~~ldL 99 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMF---TGRLKDEIPEALKMLSKALLGCPKLQKLDL 99 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhh---cCCcHHHHHHHHHHHHHHHhcCCceeEeec
Confidence 34455677888999999886542 234556778889998888321 22233444543 445668999999
Q ss_pred cCCCCcc----ccchhhhCCCCCcEEecCCCcccc
Q 039167 594 ANQMEIE----RLPETLCELYNLEHLNVNCCVKLR 624 (923)
Q Consensus 594 ~~~~~l~----~lp~~i~~L~~L~~L~L~~~~~l~ 624 (923)
|+|-.-. .+-.-|.+++.|++|.|.+|. +.
T Consensus 100 SDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg 133 (382)
T KOG1909|consen 100 SDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LG 133 (382)
T ss_pred cccccCccchHHHHHHHHhccCHHHHhhhcCC-CC
Confidence 9886222 233456678888888888887 44
No 68
>PRK04195 replication factor C large subunit; Provisional
Probab=98.38 E-value=5.5e-05 Score=86.43 Aligned_cols=186 Identities=17% Similarity=0.157 Sum_probs=111.4
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAII 256 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 256 (923)
.+++|.++.++.+.+|+..... +...+.+.|+|++|+||||+|+.+++.. .|+ .+-++.++..+. .....++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el----~~~-~ielnasd~r~~-~~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDY----GWE-VIELNASDQRTA-DVIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHc----CCC-EEEEcccccccH-HHHHHHH
Confidence 4689999999999999865321 1236789999999999999999999842 122 233444443222 2223332
Q ss_pred HHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCCh----hhHHHhHHhhhcCCCCcEEEEEecch-HHHH-Hh-
Q 039167 257 EALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENF----HKWEQFNNCLKNCLYGSKILITTRKE-AVAR-IM- 329 (923)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~-~~- 329 (923)
....... .....++-+||+|++..... ..+..+...+... +..||+|+.+. .... ..
T Consensus 86 ~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~--~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 86 GEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKA--KQPIILTANDPYDPSLRELR 149 (482)
T ss_pred HHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHcC--CCCEEEeccCccccchhhHh
Confidence 2221100 00113678999999965422 2355566655532 33466666432 1111 11
Q ss_pred cccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHHHHH
Q 039167 330 GSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTIASLL 390 (923)
Q Consensus 330 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l 390 (923)
.....+++.+++.++....+...+...+.... .+....|++.++|-.-.+......+
T Consensus 150 sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~----~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 150 NACLMIEFKRLSTRSIVPVLKRICRKEGIECD----DEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 33568999999999988888776543222121 3457888999999766554433333
No 69
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.3e-07 Score=98.62 Aligned_cols=215 Identities=19% Similarity=0.072 Sum_probs=127.0
Q ss_pred ccceEEEEEEecCCCCC-ccccccccCCceEEEeCCCCCCCc-cchHHhhcCCcccEEeccccCCccccccccccccccc
Q 039167 506 EKKILHLTLAIGCGPMP-IYDNIEALRGLRSLLLESTKHSSV-ILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIE 583 (923)
Q Consensus 506 ~~~~~~l~l~~~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~-~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~ 583 (923)
-.+++.+++.+...... .......++++|.|+++.|-+... ....+...+++|+.|+|+.|....+..... -.
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~-----~~ 194 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT-----TL 194 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc-----hh
Confidence 34566666666554221 113456788889999888765433 234556788999999998877333222111 12
Q ss_pred CCCCCcEEeccCCCCcc--ccchhhhCCCCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCC--cCCCCCCC
Q 039167 584 KLLHLKYLNLANQMEIE--RLPETLCELYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLP--VGIGKLIR 659 (923)
Q Consensus 584 ~l~~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p--~~i~~L~~ 659 (923)
.+.+|+.|.|++|. +. .+....-.+++|+.|+|..|..+..--.+...+..|+.|+|++|. +-.++ ..++.++.
T Consensus 195 ~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPG 272 (505)
T ss_pred hhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccc
Confidence 57788889998887 54 333445577888999998885343333334457788888998884 34444 34566777
Q ss_pred CCcCCceEecccCCcccccccccCCCCCCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHh
Q 039167 660 LRRVKEFVVGGGYGRACSLGSLKKLNLLRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLL 739 (923)
Q Consensus 660 L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l 739 (923)
|..|.+..++..+...... ........++.|+.|.+..|++.. -..+
T Consensus 273 L~~Lnls~tgi~si~~~d~-------------------------~s~~kt~~f~kL~~L~i~~N~I~~--------w~sl 319 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIAEPDV-------------------------ESLDKTHTFPKLEYLNISENNIRD--------WRSL 319 (505)
T ss_pred hhhhhccccCcchhcCCCc-------------------------cchhhhcccccceeeecccCcccc--------cccc
Confidence 7766655444332100000 011223456678888888776421 2234
Q ss_pred hcCCCCCCCCcEEEeeecCCC
Q 039167 740 EALGPPPNLKELWINKYRGKR 760 (923)
Q Consensus 740 ~~l~~~~~L~~L~l~~~~~~~ 760 (923)
..+...++|+.|.+.++....
T Consensus 320 ~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 320 NHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred chhhccchhhhhhcccccccc
Confidence 445556677777766655443
No 70
>PLN03025 replication factor C subunit; Provisional
Probab=98.35 E-value=9.3e-06 Score=87.60 Aligned_cols=182 Identities=14% Similarity=0.063 Sum_probs=106.4
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccc-eEEEEEeCCcccHHHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFE-KRIWVCVSDPFDEFRIARAI 255 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i 255 (923)
.+++|.++.++.|..++... ...-+.++|++|+||||+|+.+.+.. ....|. .++-++.++..... ..+.+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-HHHHH
Confidence 35789888888888776432 34457799999999999999998731 122222 12222233222221 22222
Q ss_pred HHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecch-HHHHH-hcccc
Q 039167 256 IEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRKE-AVARI-MGSTN 333 (923)
Q Consensus 256 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~-~~~~~ 333 (923)
++........ .-.++.-+++||++..........+...+......+++|+++... .+... .....
T Consensus 85 i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 85 IKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred HHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 2221110000 002456799999997766555566666665545567777776542 22221 12346
Q ss_pred eEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHH
Q 039167 334 IISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLAT 383 (923)
Q Consensus 334 ~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 383 (923)
.++++++++++....+...+-..+-... .+....|++.++|..-.+
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi~i~----~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKVPYV----PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 8999999999999888876633222111 234678889998865433
No 71
>PRK08727 hypothetical protein; Validated
Probab=98.34 E-value=2e-05 Score=80.52 Aligned_cols=149 Identities=16% Similarity=0.085 Sum_probs=88.8
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGK 283 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 283 (923)
...+.|+|..|+|||+|++++++. .......++|+.+.+ ....+. +.+. .+ .+
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~-----------------~~~~-~l-~~ 93 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLR-----------------DALE-AL-EG 93 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHH-----------------HHHH-HH-hc
Confidence 356999999999999999999874 333333556665432 111111 1111 11 13
Q ss_pred ceEEEecCCCCCC-hhhHH-HhHHhhhcC-CCCcEEEEEecch---------HHHHHhcccceEeCCCCChHHHHHHHHH
Q 039167 284 KLLLVLDDVWNEN-FHKWE-QFNNCLKNC-LYGSKILITTRKE---------AVARIMGSTNIISVNVLSGMECWLVFES 351 (923)
Q Consensus 284 r~LlVlDdv~~~~-~~~~~-~l~~~l~~~-~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 351 (923)
.-+||+||+.... ...|. .+...+... ..|..||+||+.. ++...+.....+++++++.++-.+++.+
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 3599999995432 12233 233333221 2466799999852 2333334456899999999999999998
Q ss_pred hhcCCCCccchhhHHHHHHHHHHhcCCChHHH
Q 039167 352 LAFVGKSMEERENLEKIGREITRKCKGLPLAT 383 (923)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 383 (923)
++...+-.. -++....|++.++|-.-.+
T Consensus 174 ~a~~~~l~l----~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 174 RAQRRGLAL----DEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHcCCCC----CHHHHHHHHHhCCCCHHHH
Confidence 764322111 1345677888888765544
No 72
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.33 E-value=2.4e-05 Score=85.07 Aligned_cols=181 Identities=13% Similarity=0.071 Sum_probs=107.0
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEe--CCcccHHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCV--SDPFDEFRIARA 254 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~--s~~~~~~~~~~~ 254 (923)
.+++|+++.++.+..++... ..+.+.++|+.|+||||+|+.+.+.. ....+.. .++.+ +...... ....
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~~-~~i~~~~~~~~~~~-~~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALAREL-YGEDWRE-NFLELNASDERGID-VIRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHH-cCCcccc-ceEEeccccccchH-HHHH
Confidence 35889999999999988532 34457999999999999999998742 1112211 12222 2221111 1112
Q ss_pred HHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecch-HHHHH-hccc
Q 039167 255 IIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRKE-AVARI-MGST 332 (923)
Q Consensus 255 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~-~~~~ 332 (923)
.+..+....+ .....+-++++|++..........+...+......+++|+++... .+... ....
T Consensus 88 ~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 88 KIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred HHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 2221111100 001345689999986555455666777776555566777776432 22111 1234
Q ss_pred ceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHH
Q 039167 333 NIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATK 384 (923)
Q Consensus 333 ~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 384 (923)
..+++.+++.++....+...+...+-... .+....+++.++|.+--+.
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~~i~----~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGIEIT----DDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 57899999999988888876643222111 2346778889999876543
No 73
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.33 E-value=4.2e-08 Score=105.41 Aligned_cols=128 Identities=30% Similarity=0.413 Sum_probs=58.3
Q ss_pred ccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchhh
Q 039167 527 IEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPETL 606 (923)
Q Consensus 527 ~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i 606 (923)
+..+..|+.++++.|.++. +|..+..|+ |++|-+++|. +..+|..|+.+.+|..||.+.|. +..+|..+
T Consensus 117 i~~L~~lt~l~ls~NqlS~--lp~~lC~lp-Lkvli~sNNk-------l~~lp~~ig~~~tl~~ld~s~ne-i~slpsql 185 (722)
T KOG0532|consen 117 ICNLEALTFLDLSSNQLSH--LPDGLCDLP-LKVLIVSNNK-------LTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQL 185 (722)
T ss_pred hhhhhHHHHhhhccchhhc--CChhhhcCc-ceeEEEecCc-------cccCCcccccchhHHHhhhhhhh-hhhchHHh
Confidence 3444444455555444333 222232222 4555555333 44444445544445555555544 44455445
Q ss_pred hCCCCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEe
Q 039167 607 CELYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVV 668 (923)
Q Consensus 607 ~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~ 668 (923)
+.|..|+.|+++.|. +..+|..+.. -.|..||+++| .+..+|-.+.+|+.||+|.+-++
T Consensus 186 ~~l~slr~l~vrRn~-l~~lp~El~~-LpLi~lDfScN-kis~iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 186 GYLTSLRDLNVRRNH-LEDLPEELCS-LPLIRLDFSCN-KISYLPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred hhHHHHHHHHHhhhh-hhhCCHHHhC-CceeeeecccC-ceeecchhhhhhhhheeeeeccC
Confidence 555555555554443 4444444442 23444454444 34444544445555554444333
No 74
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.33 E-value=2.9e-08 Score=100.74 Aligned_cols=151 Identities=17% Similarity=0.103 Sum_probs=85.9
Q ss_pred cCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCc--CcccccccccccEEeEeCCCCCC
Q 039167 709 LEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVV--PKNWIMSLTNLRFLGLHEWRNCE 786 (923)
Q Consensus 709 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~--~p~~~~~l~~L~~L~L~~~~~~~ 786 (923)
..+.+.|+.+....|.+.+ .....+-..++.++.|+.+.+..|.+....+ .-..+..+++|+.|+|.+|....
T Consensus 153 ~~~~~~Lrv~i~~rNrlen-----~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~ 227 (382)
T KOG1909|consen 153 AASKPKLRVFICGRNRLEN-----GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL 227 (382)
T ss_pred cCCCcceEEEEeecccccc-----ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh
Confidence 3456677888877777543 2233445566677888888887776543111 01223478888888888886543
Q ss_pred CC-----CCCCCCCCccceeccCCcCceEeCccccCCCCCCCCcccccCcccceeeccccccccccccccccccccccCc
Q 039167 787 HL-----PPLGKLPSLESLYIAGMKSVKRVGNEFLGVESDMDGSSVIAFAKLKKLTFYIMEELEEWDLGTAIKGEIIIMP 861 (923)
Q Consensus 787 ~l-----~~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~lp 861 (923)
.- ..+..+|+|+.|++++|. ++.-|..-+.. .....+|+|+.|.+.++ .++.-.. ..+...+...|
T Consensus 228 egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~------al~~~~p~L~vl~l~gN-eIt~da~-~~la~~~~ek~ 298 (382)
T KOG1909|consen 228 EGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVD------ALKESAPSLEVLELAGN-EITRDAA-LALAACMAEKP 298 (382)
T ss_pred HHHHHHHHHhcccchheeecccccc-cccccHHHHHH------HHhccCCCCceeccCcc-hhHHHHH-HHHHHHHhcch
Confidence 21 126667788888888876 43333211110 11225777877776654 2211100 01112334578
Q ss_pred ccceeeeccccc
Q 039167 862 RLSSLTIWSCRK 873 (923)
Q Consensus 862 ~L~~L~l~~c~~ 873 (923)
.|+.|+|++|..
T Consensus 299 dL~kLnLngN~l 310 (382)
T KOG1909|consen 299 DLEKLNLNGNRL 310 (382)
T ss_pred hhHHhcCCcccc
Confidence 888888888853
No 75
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.32 E-value=2.2e-05 Score=89.82 Aligned_cols=179 Identities=14% Similarity=0.150 Sum_probs=110.4
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCccccc-------------------ccceE
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEK-------------------NFEKR 237 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~ 237 (923)
.+++|.+..++.|..++... .-.+.+.++|+.|+||||+|+.+.+...-.. .|...
T Consensus 16 ddIIGQe~vv~~L~~ai~~~-----rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEG-----RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 36899999999999998643 2356789999999999999998876311110 01111
Q ss_pred EEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHH----HhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCC
Q 039167 238 IWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQK----HVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYG 313 (923)
Q Consensus 238 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 313 (923)
+.+..+.... .+.+...+.. -..+++-++|||++...+......+...+......
T Consensus 91 lEidaAs~~g---------------------Vd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~ 149 (709)
T PRK08691 91 LEIDAASNTG---------------------IDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (709)
T ss_pred EEEeccccCC---------------------HHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCC
Confidence 2222222111 2222222211 12356678999999766655667777777655556
Q ss_pred cEEEEEecc-hHHHH-HhcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHH
Q 039167 314 SKILITTRK-EAVAR-IMGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKT 385 (923)
Q Consensus 314 s~iivTtR~-~~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 385 (923)
.++|++|.+ ..+.. ..+....+++.+++.++....+.+.+-..+... -.+....|++.++|.+--+..
T Consensus 150 v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i----d~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 150 VKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY----EPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred cEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc----CHHHHHHHHHHhCCCHHHHHH
Confidence 667776654 33322 224456788999999999888887653322111 123467899999998854443
No 76
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.32 E-value=3.9e-07 Score=102.29 Aligned_cols=181 Identities=26% Similarity=0.322 Sum_probs=138.3
Q ss_pred ccccccCCceEEEeCCCCCCCccchHHhhcCC-cccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccc
Q 039167 525 DNIEALRGLRSLLLESTKHSSVILPQLFDKLT-CLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLP 603 (923)
Q Consensus 525 ~~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~-~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp 603 (923)
........+..|.+.++.+..+ +.....+. +|+.|++++|. +..+|..++.++.|+.|++++|. +..+|
T Consensus 110 ~~~~~~~~l~~L~l~~n~i~~i--~~~~~~~~~nL~~L~l~~N~-------i~~l~~~~~~l~~L~~L~l~~N~-l~~l~ 179 (394)
T COG4886 110 SELLELTNLTSLDLDNNNITDI--PPLIGLLKSNLKELDLSDNK-------IESLPSPLRNLPNLKNLDLSFND-LSDLP 179 (394)
T ss_pred hhhhcccceeEEecCCcccccC--ccccccchhhcccccccccc-------hhhhhhhhhccccccccccCCch-hhhhh
Confidence 3445557899999999987764 33345553 89999999776 88888889999999999999999 99999
Q ss_pred hhhhCCCCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEecccCCcccccccccC
Q 039167 604 ETLCELYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVGGGYGRACSLGSLKK 683 (923)
Q Consensus 604 ~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~ 683 (923)
...+.+++|+.|+++++. +..+|..+..+..|..|.+++|. ....+..+.+++++..|.+..+.... +
T Consensus 180 ~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~--------~-- 247 (394)
T COG4886 180 KLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLED--------L-- 247 (394)
T ss_pred hhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeee--------c--
Confidence 988899999999999998 99999988888889999999884 45566667777777777532222111 0
Q ss_pred CCCCCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCC
Q 039167 684 LNLLRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKR 760 (923)
Q Consensus 684 L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~ 760 (923)
...+..+.+++.|+++.|.+.. ...+.+..+++.|+++++....
T Consensus 248 ----------------------~~~~~~l~~l~~L~~s~n~i~~-----------i~~~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 248 ----------------------PESIGNLSNLETLDLSNNQISS-----------ISSLGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred ----------------------cchhccccccceeccccccccc-----------cccccccCccCEEeccCccccc
Confidence 1234455668888888876432 2237788999999999988776
No 77
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.32 E-value=1.3e-05 Score=81.94 Aligned_cols=158 Identities=19% Similarity=0.158 Sum_probs=100.2
Q ss_pred CCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHh
Q 039167 201 QKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHV 280 (923)
Q Consensus 201 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 280 (923)
+..+..+.+||++|+||||||+.+.+..+... ..||..|-...-..-.+.|+++-. =...+
T Consensus 159 q~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq---------------~~~~l 219 (554)
T KOG2028|consen 159 QNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQ---------------NEKSL 219 (554)
T ss_pred cCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHH---------------HHHhh
Confidence 34778899999999999999999998533322 456666654444444444444321 12235
Q ss_pred cCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEE--EecchHH---HHHhcccceEeCCCCChHHHHHHHHHhhc-
Q 039167 281 AGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILI--TTRKEAV---ARIMGSTNIISVNVLSGMECWLVFESLAF- 354 (923)
Q Consensus 281 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--TtR~~~v---~~~~~~~~~~~l~~L~~~~~~~lf~~~a~- 354 (923)
.++|.+|.+|.|...+..+ --.+||.-.+|+-++| ||.+... +..+..+.++.++.|+.++...++.+..-
T Consensus 220 ~krkTilFiDEiHRFNksQ---QD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~ 296 (554)
T KOG2028|consen 220 TKRKTILFIDEIHRFNKSQ---QDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIAS 296 (554)
T ss_pred hcceeEEEeHHhhhhhhhh---hhcccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHh
Confidence 6889999999996654322 2345666666876666 6776532 22235578999999999999988877321
Q ss_pred --CCCC---ccch---hhHHHHHHHHHHhcCCCh
Q 039167 355 --VGKS---MEER---ENLEKIGREITRKCKGLP 380 (923)
Q Consensus 355 --~~~~---~~~~---~~~~~~~~~i~~~c~GlP 380 (923)
.... .-.. ..-..+.+-++..|.|-.
T Consensus 297 l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 297 LGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred hccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 1111 1111 122456677888888854
No 78
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=7.5e-06 Score=90.05 Aligned_cols=195 Identities=14% Similarity=0.102 Sum_probs=110.8
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAII 256 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 256 (923)
.+++|.+..+..|..++... .-...+.++|+.|+||||+|+.+.+...-...... ........-..+...+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~-----ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~sC~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSG-----KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTSCLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcHHHHHHccCC
Confidence 35899999999998888643 12356899999999999999999873211100000 00000000011110000
Q ss_pred HHHh---C-CCCCCcCHHHHHHHHHH-HhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEE-EecchHHHH-Hh
Q 039167 257 EALT---G-CLPNFVEFQSLMQHIQK-HVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILI-TTRKEAVAR-IM 329 (923)
Q Consensus 257 ~~l~---~-~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-TtR~~~v~~-~~ 329 (923)
..+. . ......+..++...+.. ...++.-++|+|++...+...++.+...+........+|. ||....+.. ..
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETIL 169 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHH
Confidence 0000 0 00011112222222221 1245667999999988777788888777765444555554 444444432 23
Q ss_pred cccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHH
Q 039167 330 GSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLAT 383 (923)
Q Consensus 330 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 383 (923)
.....|.+.+++.++..+.+.+.+-..+... -.+....|++.++|.+--+
T Consensus 170 SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~----e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 170 SRCQDFIFKKVPLSVLQDYSEKLCKIENVQY----DQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred hhhheeeecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCChHHHH
Confidence 4467899999999998888877653222111 1345788999999987443
No 79
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.30 E-value=1e-06 Score=89.75 Aligned_cols=89 Identities=18% Similarity=0.137 Sum_probs=61.4
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCc--ccHHHHHHHHHHHHhCCCCCCcCH------HHHHH
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDP--FDEFRIARAIIEALTGCLPNFVEF------QSLMQ 274 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~------~~~~~ 274 (923)
.-..++|+|++|+|||||++.++++.... +|+..+|+.++.. .+..++++.+...+-....+.... .....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 44678999999999999999999975444 8999999997776 788999988833332211111111 11122
Q ss_pred HHHHH-hcCCceEEEecCC
Q 039167 275 HIQKH-VAGKKLLLVLDDV 292 (923)
Q Consensus 275 ~l~~~-l~~kr~LlVlDdv 292 (923)
..... -.++++++++|++
T Consensus 94 ~a~~~~~~G~~vll~iDei 112 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSI 112 (249)
T ss_pred HHHHHHHCCCCEEEEEECH
Confidence 22222 3589999999999
No 80
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=2.5e-05 Score=87.58 Aligned_cols=201 Identities=18% Similarity=0.181 Sum_probs=113.9
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCccccc-------------------ccceE
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEK-------------------NFEKR 237 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~ 237 (923)
.+++|.+.....+...+... .-...+.++|++|+||||+|+.+.+...-.. .+...
T Consensus 14 ~divGq~~i~~~L~~~i~~~-----~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKN-----SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 36899988888887777532 2346689999999999999999976321100 01112
Q ss_pred EEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEE
Q 039167 238 IWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKIL 317 (923)
Q Consensus 238 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 317 (923)
..+..+.......+ +.+.+.... ....+++-++|+|++..-.....+.+...+........+|
T Consensus 89 ~el~aa~~~gid~i-R~i~~~~~~----------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~I 151 (472)
T PRK14962 89 IELDAASNRGIDEI-RKIRDAVGY----------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFV 151 (472)
T ss_pred EEEeCcccCCHHHH-HHHHHHHhh----------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEE
Confidence 22222221111111 112111100 0123566799999996554455566666665544444544
Q ss_pred EEecc-hHHHHHh-cccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCC-ChHHHHHHHHHHccC-
Q 039167 318 ITTRK-EAVARIM-GSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKG-LPLATKTIASLLRSK- 393 (923)
Q Consensus 318 vTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~~~~~l~~~- 393 (923)
++|.+ ..+...+ .....+++.+++.++....+...+...+.... .+....|++.++| ++.|+..+-.+....
T Consensus 152 lattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~----~eal~~Ia~~s~GdlR~aln~Le~l~~~~~ 227 (472)
T PRK14962 152 LATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID----REALSFIAKRASGGLRDALTMLEQVWKFSE 227 (472)
T ss_pred EEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 44443 4443332 34578999999999988888876643221111 2346678887765 567777776543321
Q ss_pred --CCHHHHHHHH
Q 039167 394 --NTEKEWQNIL 403 (923)
Q Consensus 394 --~~~~~w~~~l 403 (923)
-+.+....++
T Consensus 228 ~~It~e~V~~~l 239 (472)
T PRK14962 228 GKITLETVHEAL 239 (472)
T ss_pred CCCCHHHHHHHH
Confidence 2445555444
No 81
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.27 E-value=2.3e-05 Score=80.32 Aligned_cols=153 Identities=14% Similarity=0.123 Sum_probs=88.1
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAG 282 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 282 (923)
....+.|+|..|+|||+||+.+++... .... ..++++...... .+ .. ..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~~-~~~~i~~~~~~~------~~----------------------~~-~~ 89 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADAS-YGGR-NARYLDAASPLL------AF----------------------DF-DP 89 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-hCCC-cEEEEehHHhHH------HH----------------------hh-cc
Confidence 446789999999999999999988421 1221 334444332110 00 01 12
Q ss_pred CceEEEecCCCCCChhhHHHhHHhhhcC-CCCc-EEEEEecchHHHH--------HhcccceEeCCCCChHHHHHHHHHh
Q 039167 283 KKLLLVLDDVWNENFHKWEQFNNCLKNC-LYGS-KILITTRKEAVAR--------IMGSTNIISVNVLSGMECWLVFESL 352 (923)
Q Consensus 283 kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~iivTtR~~~v~~--------~~~~~~~~~l~~L~~~~~~~lf~~~ 352 (923)
..-+||+||+..-+...-+.+...+... ..|. .||+|++...... .+.....+++.++++++-..++.+.
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 3457999999644333333454444332 2344 4666666432211 2223468999999998766666653
Q ss_pred hcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHHHHH
Q 039167 353 AFVGKSMEERENLEKIGREITRKCKGLPLATKTIASLL 390 (923)
Q Consensus 353 a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l 390 (923)
+-..+ ... -++....+++.+.|.+..+..+...+
T Consensus 170 ~~~~~-v~l---~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 170 AAERG-LQL---ADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHcC-CCC---CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 32111 111 13457778888999998887776655
No 82
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.26 E-value=1.6e-07 Score=92.86 Aligned_cols=129 Identities=22% Similarity=0.263 Sum_probs=88.4
Q ss_pred ccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchhh
Q 039167 527 IEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPETL 606 (923)
Q Consensus 527 ~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i 606 (923)
...+..|+.+++++|.++.+ .+...-.+.+|+|+++.|. +..+- .+..|.+|..|||++|. +.++-..-
T Consensus 280 ~dTWq~LtelDLS~N~I~~i--DESvKL~Pkir~L~lS~N~-------i~~v~-nLa~L~~L~~LDLS~N~-Ls~~~Gwh 348 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQI--DESVKLAPKLRRLILSQNR-------IRTVQ-NLAELPQLQLLDLSGNL-LAECVGWH 348 (490)
T ss_pred cchHhhhhhccccccchhhh--hhhhhhccceeEEeccccc-------eeeeh-hhhhcccceEeecccch-hHhhhhhH
Confidence 34556677888888776542 3445566788888888765 44443 36667788888888887 77666656
Q ss_pred hCCCCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCC--cCCCCCCCCCcCCceEec
Q 039167 607 CELYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLP--VGIGKLIRLRRVKEFVVG 669 (923)
Q Consensus 607 ~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p--~~i~~L~~L~~L~~~~~~ 669 (923)
.+|-|.++|.|.+|. +..+ .++++|-+|..||+++| .+..+- .+||+|+-|++|.+..+.
T Consensus 349 ~KLGNIKtL~La~N~-iE~L-SGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQNK-IETL-SGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhcCEeeeehhhhh-Hhhh-hhhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC
Confidence 677788888888876 6666 46778888888888877 444433 457777777777665544
No 83
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.26 E-value=3.4e-05 Score=87.44 Aligned_cols=196 Identities=15% Similarity=0.117 Sum_probs=110.6
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAII 256 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 256 (923)
.+++|++..++.+..++... .-.+.+.++|+.|+||||+|+.+.+...-.. |... .........+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~-----rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~-~~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNN-----KLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDG-DCCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCC-CCCcccHHHHHHH
Confidence 36889999999999988543 2346789999999999999999876311000 1110 0111111111111
Q ss_pred HHHhCC-----CCCCcCHHHHHHHH---HH-HhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEe-cchHHH
Q 039167 257 EALTGC-----LPNFVEFQSLMQHI---QK-HVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITT-RKEAVA 326 (923)
Q Consensus 257 ~~l~~~-----~~~~~~~~~~~~~l---~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~v~ 326 (923)
...... .......++....+ .. -..+++-++|+|++...+...+..+...+........+|++| ....+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 100000 00001122222111 11 112344469999997766677888888877655556665555 444443
Q ss_pred HH-hcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChH-HHHHHHH
Q 039167 327 RI-MGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPL-ATKTIAS 388 (923)
Q Consensus 327 ~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~ 388 (923)
.. ......+++.+++.++....+...+-..+.... .+.+..+++.++|.+- |+..+-.
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is----~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE----DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 22 344678999999999998888876532221111 2346788999999664 4444443
No 84
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.26 E-value=1.3e-05 Score=94.25 Aligned_cols=169 Identities=17% Similarity=0.223 Sum_probs=96.8
Q ss_pred CceecchhhHH---HHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHH
Q 039167 177 SEIFGRKDEKN---ELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIAR 253 (923)
Q Consensus 177 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 253 (923)
.+|+|.+..+. .+...+.. .....+.++|++|+||||+|+.+++. ....|. .++.+. ....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~-~~i~---- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVL-AGVK---- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhh-hhhH----
Confidence 35889887764 45555532 25567789999999999999999983 434441 111110 0000
Q ss_pred HHHHHHhCCCCCCcCHHHHHHHHHHHh--cCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEE--ecch--HHHH
Q 039167 254 AIIEALTGCLPNFVEFQSLMQHIQKHV--AGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILIT--TRKE--AVAR 327 (923)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT--tR~~--~v~~ 327 (923)
+..+......+.+ .+++.+|||||++..+...++.+...+. .|+.++|+ |.+. .+..
T Consensus 92 --------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 92 --------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred --------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhh
Confidence 1111111121212 2467899999997665555555555443 35555553 3332 1222
Q ss_pred H-hcccceEeCCCCChHHHHHHHHHhhcC------CCCccchhhHHHHHHHHHHhcCCChH
Q 039167 328 I-MGSTNIISVNVLSGMECWLVFESLAFV------GKSMEERENLEKIGREITRKCKGLPL 381 (923)
Q Consensus 328 ~-~~~~~~~~l~~L~~~~~~~lf~~~a~~------~~~~~~~~~~~~~~~~i~~~c~GlPL 381 (923)
. .....++.+++++.++...++.+.+-. ..... --.+....|++.+.|..-
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~---I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVD---LEPEAEKHLVDVANGDAR 212 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccC---CCHHHHHHHHHhCCCCHH
Confidence 1 123568999999999999998875531 11111 113456778888888643
No 85
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=4.9e-05 Score=82.03 Aligned_cols=197 Identities=16% Similarity=0.147 Sum_probs=117.0
Q ss_pred CCceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCccccc--ccceEEEEEeCCcccHHHHHH
Q 039167 176 ESEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEK--NFEKRIWVCVSDPFDEFRIAR 253 (923)
Q Consensus 176 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~~s~~~~~~~~~~ 253 (923)
-..++|.++....+...+... .....+.|+|+.|+||||+|+.+.+..--.. .+... ....+.......+
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~g-----rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~ 93 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREG-----KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWR 93 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcC-----CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHH
Confidence 346899999999999988643 2456799999999999999988876311100 01110 0000111111222
Q ss_pred HHHHH-------HhCC--C-----CCCcCHHHHHHHHHHHh-----cCCceEEEecCCCCCChhhHHHhHHhhhcCCCCc
Q 039167 254 AIIEA-------LTGC--L-----PNFVEFQSLMQHIQKHV-----AGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGS 314 (923)
Q Consensus 254 ~i~~~-------l~~~--~-----~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 314 (923)
.+... +... . ......++.. .+.+++ .+++-++|+|++...+....+.+...+.......
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 22211 0000 0 0111233333 334443 3567799999998877777888888887655555
Q ss_pred EEEEEecc-hHHHHH-hcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHH
Q 039167 315 KILITTRK-EAVARI-MGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTIA 387 (923)
Q Consensus 315 ~iivTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 387 (923)
.+|++|.. ..+... ......+++.+++.++..+++.+.... . . ...+....+++.++|.|.....+.
T Consensus 173 ~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-~--~---~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-Q--G---SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred eEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-c--C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 55555543 333222 234679999999999999999874311 1 1 112346788999999998765543
No 86
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.25 E-value=2.6e-06 Score=89.58 Aligned_cols=236 Identities=23% Similarity=0.224 Sum_probs=152.4
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEE-EEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRI-WVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVA 281 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (923)
..+.+.++|.|||||||++-++.. +...|...+ ++....-.+...+.-.....++... ...+.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~---~~g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHV---QPGDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccc---ccchHHHHHHHHHHh
Confidence 568899999999999999988877 566776555 4544444455555555555555432 222344556777788
Q ss_pred CCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecchHHHHHhcccceEeCCCCChH-HHHHHHHHhhcCCCCc-
Q 039167 282 GKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRKEAVARIMGSTNIISVNVLSGM-ECWLVFESLAFVGKSM- 359 (923)
Q Consensus 282 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~a~~~~~~- 359 (923)
++|.++|+||...-- +.-..+...+-.+...-.|+.|+|.... +.....+.+.+|+.. ++.++|...+......
T Consensus 87 ~rr~llvldncehl~-~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHLL-DACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHHH-HHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 999999999982210 1111122222233334568888886432 234567788888775 7889988766332211
Q ss_pred cchhhHHHHHHHHHHhcCCChHHHHHHHHHHccCCCHHHHHHHHhhhhhhhh-------hhhhhhhhHHHhhcccCChhh
Q 039167 360 EERENLEKIGREITRKCKGLPLATKTIASLLRSKNTEKEWQNILKSEIWEIE-------QVEKNLLAPLLLSYNELPSKV 432 (923)
Q Consensus 360 ~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~-------~~~~~~~~~l~~sy~~L~~~~ 432 (923)
...........+|.++..|.|++|...++..+.-. ..+-...++.....+. .-.....+.+.+||.-|..-.
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~-~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLS-PDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcC-HHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 11223345688999999999999999999887763 3333333322111111 123457789999999999999
Q ss_pred HHHHhhhccCCCCcccC
Q 039167 433 KQCFTYCAVFPKDVILK 449 (923)
Q Consensus 433 k~~fl~~s~fp~~~~i~ 449 (923)
+-.|.-++.|...+...
T Consensus 242 ~~~~~rLa~~~g~f~~~ 258 (414)
T COG3903 242 RALFGRLAVFVGGFDLG 258 (414)
T ss_pred HHHhcchhhhhhhhccc
Confidence 99999999998776543
No 87
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=5.1e-05 Score=84.73 Aligned_cols=181 Identities=15% Similarity=0.135 Sum_probs=113.3
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcc------------------c-ccccceE
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGD------------------V-EKNFEKR 237 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~------------------~-~~~F~~~ 237 (923)
.+++|.+..++.+.+.+... .-.+.+.++|+.|+||||+|+.+.+... + ...+..+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~-----ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLN-----KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 36899998888888877532 2345899999999999999988865200 0 0112223
Q ss_pred EEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEE
Q 039167 238 IWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKIL 317 (923)
Q Consensus 238 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 317 (923)
+.++.+......+ .+.+++.... .-..+++-++|+|++...+....+.+...+......+++|
T Consensus 88 ~eidaas~~~vdd-IR~Iie~~~~----------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 88 IEIDAASNTSVDD-IKVILENSCY----------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred EEEecccCCCHHH-HHHHHHHHHh----------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 3444433322222 1222222110 0123566789999997766667788888887766667766
Q ss_pred EEec-chHHHHHh-cccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHH
Q 039167 318 ITTR-KEAVARIM-GSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLAT 383 (923)
Q Consensus 318 vTtR-~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 383 (923)
++|. .+.+...+ .....+++.+++.++..+.+...+...+.... .+....|++.++|.+-.+
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~----~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD----EESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 6654 34444332 44678999999999999888876643222111 234678899999977543
No 88
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=3.7e-05 Score=88.49 Aligned_cols=194 Identities=15% Similarity=0.168 Sum_probs=112.5
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAII 256 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 256 (923)
.++||.+..++.|...+... .-...+.++|+.|+||||+|+.+.+...-...+. +.+...-..-+.|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~-----rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLG-----RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHH
Confidence 36899999999998888542 2345678999999999999999876321110000 00111011111111
Q ss_pred HHHh-----CCCCCCcCHHHHHHHHHH----HhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecc-hHHH
Q 039167 257 EALT-----GCLPNFVEFQSLMQHIQK----HVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRK-EAVA 326 (923)
Q Consensus 257 ~~l~-----~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~ 326 (923)
..-. .........++....+.. -..+++-++|||++...+....+.+...+.......++|++|.+ ..+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 0000 000000112222222111 13467779999999887777888888888766556666555554 4443
Q ss_pred H-HhcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHH
Q 039167 327 R-IMGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTI 386 (923)
Q Consensus 327 ~-~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 386 (923)
. .......|++++++.++....+.+..-..+... -.+....|++.++|.+--+..+
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~----e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPF----EPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 2 234468999999999999988877542211111 1234677899999987644433
No 89
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.22 E-value=7.4e-05 Score=82.54 Aligned_cols=184 Identities=12% Similarity=0.117 Sum_probs=110.7
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccc--------------------cccce
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVE--------------------KNFEK 236 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~ 236 (923)
.+++|.+..++.+.+++... .-...+.++|+.|+||||+|+.+.....-. .+++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~-----~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNG-----RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 36899999999999988542 234678899999999999998886531100 12222
Q ss_pred EEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEE
Q 039167 237 RIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKI 316 (923)
Q Consensus 237 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 316 (923)
+++..+...... ..+.++..+... -..+++-++|+|++..........+...+......+.+
T Consensus 89 -~~~~~~~~~~~~-~~~~l~~~~~~~----------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~l 150 (355)
T TIGR02397 89 -IEIDAASNNGVD-DIREILDNVKYA----------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVF 150 (355)
T ss_pred -EEeeccccCCHH-HHHHHHHHHhcC----------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeE
Confidence 233222111111 112222221110 12345568899998655545667777777655556677
Q ss_pred EEEecchH-HHHH-hcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHH
Q 039167 317 LITTRKEA-VARI-MGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTIA 387 (923)
Q Consensus 317 ivTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 387 (923)
|++|.+.. +... ......+++.+++.++..+.+...+-..+.... .+.+..+++.++|.|..+....
T Consensus 151 Il~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~----~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 151 ILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE----DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCChHHHHHHH
Confidence 77765443 3222 233568899999999988888876532221111 2457788999999886665443
No 90
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=3.6e-05 Score=87.40 Aligned_cols=183 Identities=15% Similarity=0.134 Sum_probs=111.1
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccc-------------------cccceE
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVE-------------------KNFEKR 237 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~ 237 (923)
.++||-+..++.|..++... .-...+.++|+.|+||||+|+.+.+...-. +.|.-.
T Consensus 16 ~divGq~~v~~~L~~~~~~~-----~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQ-----YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhC-----CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 35899999999999999543 234578899999999999998887631111 112222
Q ss_pred EEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEE
Q 039167 238 IWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKIL 317 (923)
Q Consensus 238 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 317 (923)
+.+..+......++ +.+++.+.. .-..++.-++|+|++...+......+...+......+++|
T Consensus 91 ~eidaas~~~v~~i-R~l~~~~~~----------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fI 153 (509)
T PRK14958 91 FEVDAASRTKVEDT-RELLDNIPY----------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFI 153 (509)
T ss_pred EEEcccccCCHHHH-HHHHHHHhh----------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 33332222222221 122221111 0123566789999998777777888888887666667776
Q ss_pred EEecc-hHHHHH-hcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHH
Q 039167 318 ITTRK-EAVARI-MGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKT 385 (923)
Q Consensus 318 vTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 385 (923)
++|.+ ..+... ......+++++++.++....+.+.+-..+.... .+....|++.++|.+--+..
T Consensus 154 lattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~----~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 154 LATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE----NAALDLLARAANGSVRDALS 219 (509)
T ss_pred EEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHH
Confidence 65544 333322 234578899999999887776655432221111 22356788899998754433
No 91
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.21 E-value=6.1e-05 Score=75.01 Aligned_cols=268 Identities=18% Similarity=0.176 Sum_probs=139.7
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAII 256 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 256 (923)
.+|+|.+.-++++.-.+..... .++.+--+.++|++|.||||||.-+.+. +...+.. .-+....-..-+..++
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~k~----tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANE--LGVNLKI----TSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCeEe----cccccccChhhHHHHH
Confidence 4699998888877665543222 4456778999999999999999999983 4433321 1111111111122222
Q ss_pred HHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcC--------CCCcE-----------EE
Q 039167 257 EALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNC--------LYGSK-----------IL 317 (923)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~--------~~gs~-----------ii 317 (923)
..+ .+.=++.+|.+..-+...-+.+..+..+. ++++| |=
T Consensus 99 t~L----------------------e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIG 156 (332)
T COG2255 99 TNL----------------------EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIG 156 (332)
T ss_pred hcC----------------------CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEee
Confidence 222 12335566766554433333343333221 22333 44
Q ss_pred EEecchHHHHHhcc--cceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHHHHHccCCC
Q 039167 318 ITTRKEAVARIMGS--TNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTIASLLRSKNT 395 (923)
Q Consensus 318 vTtR~~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~ 395 (923)
-|||.-.+...+.. .-+.+++.-+.+|-.+...+.+..-.-.. .++-+.+|+++..|-|--..-+-+.++.
T Consensus 157 ATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i----~~~~a~eIA~rSRGTPRIAnRLLrRVRD--- 229 (332)
T COG2255 157 ATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEI----DEEAALEIARRSRGTPRIANRLLRRVRD--- 229 (332)
T ss_pred eccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCC----ChHHHHHHHHhccCCcHHHHHHHHHHHH---
Confidence 58886544433322 34678888899999988888763322211 2344889999999999665554444432
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhHHHhhcccCChhhHHHHhhhccCCCCcccChHHHHHHHHhccCCCHHHHHHHHHHH
Q 039167 396 EKEWQNILKSEIWEIEQVEKNLLAPLLLSYNELPSKVKQCFTYCAVFPKDVILKKDKLIELWMAQETKEMEEIGEEYFNV 475 (923)
Q Consensus 396 ~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~~s~fp~~~~i~~~~Li~~W~ae~~~~~e~~~~~~~~~ 475 (923)
+..+.....-. ....+..+..|.+-=..|....+..+..+.-...|-.+-.+. +..-++|...+.||+-+-|
T Consensus 230 ---fa~V~~~~~I~-~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~t-ia~~lge~~~TiEdv~EPy--- 301 (332)
T COG2255 230 ---FAQVKGDGDID-RDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDT-IAAALGEDRDTIEDVIEPY--- 301 (332)
T ss_pred ---HHHHhcCCccc-HHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHH-HHHHhcCchhHHHHHHhHH---
Confidence 11111110000 000111222333222334443333333332222222223322 2333455557777777766
Q ss_pred HHhcccccccCCc
Q 039167 476 LASRSFFQEFGRG 488 (923)
Q Consensus 476 Lv~r~l~q~~~~~ 488 (923)
|+..+|+|...+.
T Consensus 302 Liq~gfi~RTpRG 314 (332)
T COG2255 302 LIQQGFIQRTPRG 314 (332)
T ss_pred HHHhchhhhCCCc
Confidence 6889999877654
No 92
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.21 E-value=3.9e-05 Score=83.94 Aligned_cols=178 Identities=11% Similarity=0.050 Sum_probs=108.5
Q ss_pred ceecchhhHHHHHHHHhcCCCC----CCCCCEEEEEEecCCChHHHHHHHHhcCcccc-------------------ccc
Q 039167 178 EIFGRKDEKNELVDRLICENSI----EQKGPHIISLVGMGGIGKTTLAQFAYNNGDVE-------------------KNF 234 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F 234 (923)
+++|.+..++.|...+...... ...-.+.+.++|+.|+|||++|+.+.+...-. .|.
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hp 85 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHP 85 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 5889999999999988653210 00135678899999999999998886521000 011
Q ss_pred ceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHh-----cCCceEEEecCCCCCChhhHHHhHHhhhc
Q 039167 235 EKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHV-----AGKKLLLVLDDVWNENFHKWEQFNNCLKN 309 (923)
Q Consensus 235 ~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~ 309 (923)
| ..++.... .....+++.. +.+.+ .+++-++|+|++...+......+...+..
T Consensus 86 D-~~~i~~~~--------------------~~i~i~~iR~-l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEe 143 (394)
T PRK07940 86 D-VRVVAPEG--------------------LSIGVDEVRE-LVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEE 143 (394)
T ss_pred C-EEEecccc--------------------ccCCHHHHHH-HHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhc
Confidence 1 11111100 0111222222 22221 34556888899977766666777777766
Q ss_pred CCCCcEEEEEecc-hHHHHH-hcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHH
Q 039167 310 CLYGSKILITTRK-EAVARI-MGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTI 386 (923)
Q Consensus 310 ~~~gs~iivTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 386 (923)
...+..+|++|.+ ..+... ......+.+.+++.++..+.+..... .. .+.+..+++.++|.|.....+
T Consensus 144 p~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~-----~~----~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 144 PPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG-----VD----PETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-----CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 5556666666665 344422 24467999999999999988874321 11 233678899999999765444
No 93
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.20 E-value=5.1e-05 Score=82.36 Aligned_cols=196 Identities=14% Similarity=0.083 Sum_probs=115.1
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEE----EEeCCcccHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIW----VCVSDPFDEFRIA 252 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w----v~~s~~~~~~~~~ 252 (923)
.+++|.++..+.+.+.+... .-...+.++|+.|+||+|+|..+.+..--......... .+.. ....-..-
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~-----rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~-~~~~c~~c 92 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSG-----RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA-IDPDHPVA 92 (365)
T ss_pred hhccChHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc-CCCCChHH
Confidence 46999999999999988643 24567999999999999999777552100000000000 0000 00000011
Q ss_pred HHHHHHHhCC---------C-----CCCcCHHHHHHHHHHHh-----cCCceEEEecCCCCCChhhHHHhHHhhhcCCCC
Q 039167 253 RAIIEALTGC---------L-----PNFVEFQSLMQHIQKHV-----AGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYG 313 (923)
Q Consensus 253 ~~i~~~l~~~---------~-----~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 313 (923)
+.+...-... . .....+++. +.+.+.+ .+.+-++|+||+...+......+...+.....+
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdqi-R~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEV-RELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHH-HHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 1111000000 0 011123332 2333333 356779999999888878888888888766666
Q ss_pred cEEEEEecchH-HHHH-hcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHH
Q 039167 314 SKILITTRKEA-VARI-MGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTIA 387 (923)
Q Consensus 314 s~iivTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 387 (923)
+.+|++|.+.+ +... ......+.+.+++.++..+++...... ..+ +....+++.++|.|..+..+.
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~-----~~~---~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD-----LPD---DPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc-----CCH---HHHHHHHHHcCCCHHHHHHHh
Confidence 77777777643 3222 244679999999999999999875311 011 112678999999998765543
No 94
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=4.8e-05 Score=87.42 Aligned_cols=196 Identities=14% Similarity=0.132 Sum_probs=110.8
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCccccccc--ceEEEEEeCCcccHHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNF--EKRIWVCVSDPFDEFRIARA 254 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~ 254 (923)
.+++|-+..++.|.+++... .-...+.++|+.|+||||+|+.+.+...-.... ..... .+++.-..-+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~-----rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQ-----RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHH
Confidence 35889888888898888643 245678999999999999999885421100000 00000 00010011111
Q ss_pred HHHHHh-----CCCCCCcCHHHHHHHHHHH----hcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEe-cchH
Q 039167 255 IIEALT-----GCLPNFVEFQSLMQHIQKH----VAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITT-RKEA 324 (923)
Q Consensus 255 i~~~l~-----~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~ 324 (923)
|...-. .........++....+... ..++.-++|||++...+...+..+...+.......++|++| ....
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 100000 0000011222222222211 13455689999998877778888888776655566666555 4344
Q ss_pred HHH-HhcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHH
Q 039167 325 VAR-IMGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKT 385 (923)
Q Consensus 325 v~~-~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 385 (923)
+.. .......+++++++.++..+.+.+.+...+.... .+....|++.++|.+--+..
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie----~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE----PQALRLLARAARGSMRDALS 224 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 432 2344679999999999998888876532221111 23467888899997754443
No 95
>PLN03150 hypothetical protein; Provisional
Probab=98.19 E-value=4.2e-06 Score=98.43 Aligned_cols=93 Identities=24% Similarity=0.381 Sum_probs=59.1
Q ss_pred ccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchhhhCCCCCcEEecCCCccccccCccccCCCCCC
Q 039167 558 LRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPETLCELYNLEHLNVNCCVKLRELPQGIGRLRKLM 637 (923)
Q Consensus 558 Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 637 (923)
++.|+|++|. ....+|..+++|.+|++|+|++|.....+|..++.+++|+.|+|++|.....+|..+++|++|+
T Consensus 420 v~~L~L~~n~------L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~ 493 (623)
T PLN03150 420 IDGLGLDNQG------LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493 (623)
T ss_pred EEEEECCCCC------ccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCC
Confidence 5566666544 1235566666777777777777663346666677777777777777664446666677777777
Q ss_pred EEeCCCCcccccCCcCCCC
Q 039167 638 YLDNECTVSLRYLPVGIGK 656 (923)
Q Consensus 638 ~L~l~~~~~l~~~p~~i~~ 656 (923)
+|++++|.....+|..++.
T Consensus 494 ~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 494 ILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred EEECcCCcccccCChHHhh
Confidence 7777766555566665544
No 96
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.19 E-value=6.5e-05 Score=76.93 Aligned_cols=155 Identities=16% Similarity=0.121 Sum_probs=91.0
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGK 283 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 283 (923)
...+.|+|+.|+|||+|++.+++. ....-..+.++.+..... ...+. .+.+. +
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~--------------------~~~~~----~~~~~-~ 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW--------------------FVPEV----LEGME-Q 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh--------------------hhHHH----HHHhh-h
Confidence 357899999999999999999883 322223455665532100 00011 11111 1
Q ss_pred ceEEEecCCCCCC-hhhHHH-hHHhhhcC-CCC-cEEEEEecch---------HHHHHhcccceEeCCCCChHHHHHHHH
Q 039167 284 KLLLVLDDVWNEN-FHKWEQ-FNNCLKNC-LYG-SKILITTRKE---------AVARIMGSTNIISVNVLSGMECWLVFE 350 (923)
Q Consensus 284 r~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~g-s~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 350 (923)
--+|++||+.... ...|+. +...+... ..| .++|+||+.. +....+....+++++++++++-.+.+.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 2489999995432 134443 32333221 123 3799999854 333444556799999999999999988
Q ss_pred HhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHHHH
Q 039167 351 SLAFVGKSMEERENLEKIGREITRKCKGLPLATKTIASL 389 (923)
Q Consensus 351 ~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~ 389 (923)
+++...+ .. --+++..-|++.+.|..-++..+-..
T Consensus 178 ~~a~~~~-~~---l~~~v~~~L~~~~~~d~r~l~~~l~~ 212 (235)
T PRK08084 178 LRARLRG-FE---LPEDVGRFLLKRLDREMRTLFMTLDQ 212 (235)
T ss_pred HHHHHcC-CC---CCHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 7664321 11 12456777888888766555444333
No 97
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=3.4e-05 Score=85.70 Aligned_cols=198 Identities=13% Similarity=0.120 Sum_probs=109.8
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEE-eCCcccHHHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVC-VSDPFDEFRIARAI 255 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-~s~~~~~~~~~~~i 255 (923)
.+++|.+..++.|..++... .-...+.++|+.|+||||+|+.+.+...-...+....|.. +..+...-..-+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~-----~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMG-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhC-----CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 36889998888888888532 2345688999999999999998876321111110000110 00011000011111
Q ss_pred HHHHhC-----CCCCCcCHHHHHHHHHHH----hcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEe-cchHH
Q 039167 256 IEALTG-----CLPNFVEFQSLMQHIQKH----VAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITT-RKEAV 325 (923)
Q Consensus 256 ~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~v 325 (923)
...... ........+++...+... ..+++-++|+|++...+...++.+...+......+.+|++| +...+
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl 170 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHh
Confidence 100000 000111123332221111 23556688999997766667888888887666666666555 44444
Q ss_pred HHHh-cccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHH
Q 039167 326 ARIM-GSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLAT 383 (923)
Q Consensus 326 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 383 (923)
.... .....+++.+++.++..+.+...+-..+... -.+.+..|++.++|.+--+
T Consensus 171 ~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i----~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 171 PATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISV----DADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 4322 2346899999999998888876553211111 1344788999999977543
No 98
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=5.9e-08 Score=95.94 Aligned_cols=158 Identities=18% Similarity=0.168 Sum_probs=86.9
Q ss_pred CCcEEeccCCCCcc--ccchhhhCCCCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCC
Q 039167 587 HLKYLNLANQMEIE--RLPETLCELYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVK 664 (923)
Q Consensus 587 ~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~ 664 (923)
.|++|||+.+. ++ .+..-++.+.+|+-|.|.+...-..+-..|.+-.+|+.|+++.|..+...
T Consensus 186 Rlq~lDLS~s~-it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n-------------- 250 (419)
T KOG2120|consen 186 RLQHLDLSNSV-ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN-------------- 250 (419)
T ss_pred hhHHhhcchhh-eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchh--------------
Confidence 46777777665 43 44455666777777777776522234445666677777777766332211
Q ss_pred ceEecccCCcccccccccCCCCCCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCC
Q 039167 665 EFVVGGGYGRACSLGSLKKLNLLRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGP 744 (923)
Q Consensus 665 ~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~ 744 (923)
+....+.+|+.|.+|+|+||.... .........+
T Consensus 251 ---------------------------------------~~~ll~~scs~L~~LNlsWc~l~~-----~~Vtv~V~hi-- 284 (419)
T KOG2120|consen 251 ---------------------------------------ALQLLLSSCSRLDELNLSWCFLFT-----EKVTVAVAHI-- 284 (419)
T ss_pred ---------------------------------------HHHHHHHhhhhHhhcCchHhhccc-----hhhhHHHhhh--
Confidence 112334556677777888876322 1111111112
Q ss_pred CCCCCcEEEeeecCCCC--CcCcccccccccccEEeEeCCCCCCC--CCCCCCCCCccceeccCCc
Q 039167 745 PPNLKELWINKYRGKRN--VVPKNWIMSLTNLRFLGLHEWRNCEH--LPPLGKLPSLESLYIAGMK 806 (923)
Q Consensus 745 ~~~L~~L~l~~~~~~~~--~~~p~~~~~l~~L~~L~L~~~~~~~~--l~~l~~L~~L~~L~L~~~~ 806 (923)
-++|..|+|+||...-. .+ ......+++|..|+|++|..++. ...+-+++.|++|.++.|.
T Consensus 285 se~l~~LNlsG~rrnl~~sh~-~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 285 SETLTQLNLSGYRRNLQKSHL-STLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred chhhhhhhhhhhHhhhhhhHH-HHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence 35777788877753320 01 11122567777777777754443 1125566777777777765
No 99
>PRK09087 hypothetical protein; Validated
Probab=98.17 E-value=3.8e-05 Score=77.77 Aligned_cols=143 Identities=16% Similarity=0.167 Sum_probs=86.7
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGK 283 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 283 (923)
.+.+.|+|+.|+|||+|++.+++... ..+++.. .+...++.. +.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~~---------------------~~-- 87 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAANA---------------------AA-- 87 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHHh---------------------hh--
Confidence 46789999999999999999887421 1133221 111111111 11
Q ss_pred ceEEEecCCCCCChhhHHHhHHhhhcC-CCCcEEEEEecc---------hHHHHHhcccceEeCCCCChHHHHHHHHHhh
Q 039167 284 KLLLVLDDVWNENFHKWEQFNNCLKNC-LYGSKILITTRK---------EAVARIMGSTNIISVNVLSGMECWLVFESLA 353 (923)
Q Consensus 284 r~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a 353 (923)
.-+|++||+..... .-+.+...+... ..|..||+|++. ++....+....++++++++.++-.+++.+.+
T Consensus 88 ~~~l~iDDi~~~~~-~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 88 EGPVLIEDIDAGGF-DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred cCeEEEECCCCCCC-CHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 13788899954311 112233333222 236679998873 3344445566799999999999999999876
Q ss_pred cCCCCccchhhHHHHHHHHHHhcCCChHHHHHHH
Q 039167 354 FVGKSMEERENLEKIGREITRKCKGLPLATKTIA 387 (923)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 387 (923)
-..+- . --+++..-|++.+.|..-++..+-
T Consensus 167 ~~~~~-~---l~~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 167 ADRQL-Y---VDPHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred HHcCC-C---CCHHHHHHHHHHhhhhHHHHHHHH
Confidence 43221 1 124567778888888776665433
No 100
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=7.6e-05 Score=86.04 Aligned_cols=198 Identities=14% Similarity=0.113 Sum_probs=113.8
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccce--EEEEEeCCcccHHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEK--RIWVCVSDPFDEFRIARA 254 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~wv~~s~~~~~~~~~~~ 254 (923)
.+++|.+..++.|...+... .-...+.++|+.|+||||+|+.+.+...-...... ..+ +....-.--+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~g-----ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETG-----RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGEHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccHHHHH
Confidence 36899999999999988643 23557889999999999999998773211110000 000 00000000011
Q ss_pred HHHHHhC-----CCCCCcCHHHHHHHHHH----HhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEe-cchH
Q 039167 255 IIEALTG-----CLPNFVEFQSLMQHIQK----HVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITT-RKEA 324 (923)
Q Consensus 255 i~~~l~~-----~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~ 324 (923)
|...-.. ........+++...+.. -..+++-++|+|++...+....+.+...+......+.+|++| ....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 1110000 00011122332222211 123455679999997766667778888887666667766655 4344
Q ss_pred HHHHh-cccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHH
Q 039167 325 VARIM-GSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTIA 387 (923)
Q Consensus 325 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 387 (923)
+...+ .....+++..++.++....+.+.+-..+.... .+....|++.++|.+.-+....
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~----~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE----DEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 43322 34678999999999999888876532221111 2446788999999886554433
No 101
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.16 E-value=3.4e-06 Score=89.37 Aligned_cols=100 Identities=17% Similarity=0.137 Sum_probs=65.0
Q ss_pred HHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcc--cHHHHHHHHHHHHhCCCC
Q 039167 187 NELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPF--DEFRIARAIIEALTGCLP 264 (923)
Q Consensus 187 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~ 264 (923)
-++++.+..- ..-+..+|+|++|+||||||++||++.... +|+..+||.+++.. ++.++++.+...+-....
T Consensus 157 ~rvID~l~PI-----GkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~ 230 (416)
T PRK09376 157 TRIIDLIAPI-----GKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTF 230 (416)
T ss_pred eeeeeeeccc-----ccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECC
Confidence 3555666432 234568999999999999999999974444 89999999999887 677777777632221111
Q ss_pred CCcCHHHH-----HHHHHHH--hcCCceEEEecCC
Q 039167 265 NFVEFQSL-----MQHIQKH--VAGKKLLLVLDDV 292 (923)
Q Consensus 265 ~~~~~~~~-----~~~l~~~--l~~kr~LlVlDdv 292 (923)
+....... .-...+. -.+++++|++|++
T Consensus 231 d~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsI 265 (416)
T PRK09376 231 DEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSI 265 (416)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEECh
Confidence 11111110 1111122 3689999999999
No 102
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.14 E-value=8.6e-05 Score=73.49 Aligned_cols=90 Identities=10% Similarity=0.051 Sum_probs=64.6
Q ss_pred CCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecch-HHHHHh-cccceEeCCCCChHHHHHHHHHhhcCCCCc
Q 039167 282 GKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRKE-AVARIM-GSTNIISVNVLSGMECWLVFESLAFVGKSM 359 (923)
Q Consensus 282 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 359 (923)
+.+-++|+||+.......++.+...+......+.+|++|++. .+...+ .....+++.+++.++..+.+.+. + -
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g-i-- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G-I-- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C-C--
Confidence 566789999997666667778888887666667777777653 332222 33568999999999998888776 1 1
Q ss_pred cchhhHHHHHHHHHHhcCCChH
Q 039167 360 EERENLEKIGREITRKCKGLPL 381 (923)
Q Consensus 360 ~~~~~~~~~~~~i~~~c~GlPL 381 (923)
. .+.+..|++.++|.|.
T Consensus 170 -~----~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 170 -S----EEAAELLLALAGGSPG 186 (188)
T ss_pred -C----HHHHHHHHHHcCCCcc
Confidence 1 2447889999999885
No 103
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=6.6e-05 Score=85.91 Aligned_cols=184 Identities=15% Similarity=0.134 Sum_probs=109.7
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccc-------------------cccceE
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVE-------------------KNFEKR 237 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~ 237 (923)
.+++|.+..++.+..++... .-.+.+.++|+.|+||||+|+.+.+...-. +.|...
T Consensus 16 ~divGq~~v~~~L~~~i~~~-----~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQ-----RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 36889999999999888643 234567899999999999999886631110 011122
Q ss_pred EEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEE
Q 039167 238 IWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKIL 317 (923)
Q Consensus 238 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 317 (923)
+++..+....... .+.+++.+.. .-..+++-++|+|++...+......+...+......+.+|
T Consensus 91 ~ei~~~~~~~vd~-ir~l~~~~~~----------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fI 153 (527)
T PRK14969 91 IEVDAASNTQVDA-MRELLDNAQY----------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFI 153 (527)
T ss_pred eEeeccccCCHHH-HHHHHHHHhh----------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEE
Confidence 2222221111111 1122211110 0123567799999997766666777888777655566666
Q ss_pred EEecc-hHHHH-HhcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChH-HHHHH
Q 039167 318 ITTRK-EAVAR-IMGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPL-ATKTI 386 (923)
Q Consensus 318 vTtR~-~~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 386 (923)
++|.+ +.+.. .......+++++++.++..+.+.+.+-..+... -.+....|++.++|.+- |+..+
T Consensus 154 L~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~----~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 154 LATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPF----DATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 65544 33321 123357899999999999888876543221111 12345778899999775 44444
No 104
>PLN03150 hypothetical protein; Provisional
Probab=98.14 E-value=2.9e-06 Score=99.81 Aligned_cols=106 Identities=20% Similarity=0.285 Sum_probs=62.5
Q ss_pred ceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchhhhCCCCC
Q 039167 533 LRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPETLCELYNL 612 (923)
Q Consensus 533 Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L 612 (923)
++.|.++++.+... +|..+.++++|+.|+|++|. ....+|..++.+.+|++|+|++|.....+|+.+++|++|
T Consensus 420 v~~L~L~~n~L~g~-ip~~i~~L~~L~~L~Ls~N~------l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L 492 (623)
T PLN03150 420 IDGLGLDNQGLRGF-IPNDISKLRHLQSINLSGNS------IRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492 (623)
T ss_pred EEEEECCCCCcccc-CCHHHhCCCCCCEEECCCCc------ccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCC
Confidence 55666666655433 34446666666666666554 123556666666666666666666334566666666666
Q ss_pred cEEecCCCccccccCccccCC-CCCCEEeCCCCc
Q 039167 613 EHLNVNCCVKLRELPQGIGRL-RKLMYLDNECTV 645 (923)
Q Consensus 613 ~~L~L~~~~~l~~lp~~i~~L-~~L~~L~l~~~~ 645 (923)
++|+|++|.....+|..++.+ .++..+++.+|.
T Consensus 493 ~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 493 RILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 666666666444666665543 345556655553
No 105
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.09 E-value=0.00017 Score=74.10 Aligned_cols=204 Identities=18% Similarity=0.125 Sum_probs=124.1
Q ss_pred Cceecc---hhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccc----cccceEEEEEeCCcccHH
Q 039167 177 SEIFGR---KDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVE----KNFEKRIWVCVSDPFDEF 249 (923)
Q Consensus 177 ~~~vGr---~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~ 249 (923)
+..+|. .+.++++.+++..+. .....-+.|+|..|.|||++++++.+..-.. ..--.++.|.+....+..
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~---~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~ 110 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPK---RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDER 110 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCc---ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChH
Confidence 345554 345667777776543 4566789999999999999999997642111 111156777788889999
Q ss_pred HHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcC-CceEEEecCCCCC---ChhhHHHhHHhhhcCC---CCcEEEEEecc
Q 039167 250 RIARAIIEALTGCLPNFVEFQSLMQHIQKHVAG-KKLLLVLDDVWNE---NFHKWEQFNNCLKNCL---YGSKILITTRK 322 (923)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~---~~~~~~~l~~~l~~~~---~gs~iivTtR~ 322 (923)
.++..|+.+++.................+.++. +--+||+|.+.+- +..+-..+...+..-+ .=+-|.|-|+.
T Consensus 111 ~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 111 RFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred HHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 999999999998776666666666666666653 4458899999652 1122233334443322 34556666665
Q ss_pred hHHHHHh-----cccceEeCCCCChHH-HHHHHHHhh--cCCCCccchhhHHHHHHHHHHhcCCChHHHH
Q 039167 323 EAVARIM-----GSTNIISVNVLSGME-CWLVFESLA--FVGKSMEERENLEKIGREITRKCKGLPLATK 384 (923)
Q Consensus 323 ~~v~~~~-----~~~~~~~l~~L~~~~-~~~lf~~~a--~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 384 (923)
---+-.. +...++.++....++ ...|+.... +.-..+ ..-...++++.|...++|+.=-+.
T Consensus 191 A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~-S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 191 AYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKP-SNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCC-CCCCCHHHHHHHHHHcCCchHHHH
Confidence 3222111 223566777665554 444443221 111111 112346789999999999864443
No 106
>PRK05642 DNA replication initiation factor; Validated
Probab=98.09 E-value=0.00012 Score=74.85 Aligned_cols=156 Identities=17% Similarity=0.182 Sum_probs=92.8
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGK 283 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 283 (923)
...+.|+|..|+|||.|++.+++. ....-..++|++..+ +... . ..+.+.+.+-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~------~~~~--------------~----~~~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAE------LLDR--------------G----PELLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHH------HHhh--------------h----HHHHHhhhhC
Confidence 367899999999999999999873 222223456665432 1111 0 1122223222
Q ss_pred ceEEEecCCCCCC-hhhHHH-hHHhhhcC-CCCcEEEEEecchH---------HHHHhcccceEeCCCCChHHHHHHHHH
Q 039167 284 KLLLVLDDVWNEN-FHKWEQ-FNNCLKNC-LYGSKILITTRKEA---------VARIMGSTNIISVNVLSGMECWLVFES 351 (923)
Q Consensus 284 r~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~ 351 (923)
=++|+||+.... ...|+. +...+... ..|..+|+|++... ....+....++++++++.++-.+.+..
T Consensus 99 -d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 -ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred -CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 268899995331 134443 44444332 24667999887532 222233346899999999999999986
Q ss_pred hhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHHHHH
Q 039167 352 LAFVGKSMEERENLEKIGREITRKCKGLPLATKTIASLL 390 (923)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l 390 (923)
++...+- ..+ +++..-|++.+.|..-.+..+-..|
T Consensus 178 ka~~~~~-~l~---~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 178 RASRRGL-HLT---DEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHcCC-CCC---HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 6543221 111 3667788888888766655444433
No 107
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=0.00012 Score=83.42 Aligned_cols=196 Identities=13% Similarity=0.125 Sum_probs=111.5
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHH
Q 039167 178 EIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIE 257 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 257 (923)
+++|.+..++.|...+... .-...+.++|+.|+||||+|+.+.+...-....+ ...++.-..-+.|..
T Consensus 17 dIiGQe~v~~~L~~ai~~~-----ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-------~~pCg~C~sC~~i~~ 84 (624)
T PRK14959 17 EVAGQETVKAILSRAAQEN-----RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPT-------GEPCNTCEQCRKVTQ 84 (624)
T ss_pred HhcCCHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhccccCCCC-------CCCCcccHHHHHHhc
Confidence 5789888888888877532 2346788999999999999998877421110000 000011011111110
Q ss_pred HHhCC-----CCCCcCHHHHHHHHHHH-----hcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecc-hHHH
Q 039167 258 ALTGC-----LPNFVEFQSLMQHIQKH-----VAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRK-EAVA 326 (923)
Q Consensus 258 ~l~~~-----~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~ 326 (923)
..... .......+.... +.+. ..+++-+||+|++...+....+.+...+........+|++|.. ..+.
T Consensus 85 g~hpDv~eId~a~~~~Id~iR~-L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 85 GMHVDVVEIDGASNRGIDDAKR-LKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred CCCCceEEEecccccCHHHHHH-HHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 00000 000011121111 2211 2456779999999776666777787777654445556665544 4444
Q ss_pred HH-hcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCCh-HHHHHHHHHH
Q 039167 327 RI-MGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLP-LATKTIASLL 390 (923)
Q Consensus 327 ~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~~~~l 390 (923)
.. ......+++++++.++....+...+........ .+.+..|++.++|.+ .|+..+...+
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id----~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYD----PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 32 234568999999999999888775543221111 234677888999954 6777766544
No 108
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=0.0002 Score=82.09 Aligned_cols=187 Identities=12% Similarity=0.100 Sum_probs=113.3
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCccccccc---------------------c
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNF---------------------E 235 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---------------------~ 235 (923)
.+++|.+..++.|..++... .-...+.++|+.|+||||+|+.+.+...-.... .
T Consensus 13 ~eivGq~~i~~~L~~~i~~~-----r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~ 87 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAG-----RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSI 87 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCc
Confidence 36899999999999998642 245578899999999999999887631100000 0
Q ss_pred eEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHH-HhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCc
Q 039167 236 KRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQK-HVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGS 314 (923)
Q Consensus 236 ~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 314 (923)
.++.+..+....+ .+..++...+.. -..+++-++|+|++...+....+.+...+.......
T Consensus 88 dvieidaas~~gv------------------d~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~ 149 (584)
T PRK14952 88 DVVELDAASHGGV------------------DDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHL 149 (584)
T ss_pred eEEEeccccccCH------------------HHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCe
Confidence 1112211111111 111111111111 123566689999998777778888888887766566
Q ss_pred EEEEEe-cchHHHHH-hcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChH-HHHHHHHHH
Q 039167 315 KILITT-RKEAVARI-MGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPL-ATKTIASLL 390 (923)
Q Consensus 315 ~iivTt-R~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~~l 390 (923)
.+|++| ....+... ......+++.+++.++..+.+...+-..+.... .+....|++.++|.+- |+..+-.++
T Consensus 150 ~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~----~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 150 IFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD----DAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred EEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 666555 44444432 344678999999999988888765532221111 2346778889999774 555554443
No 109
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.05 E-value=0.0003 Score=71.05 Aligned_cols=184 Identities=13% Similarity=0.155 Sum_probs=100.8
Q ss_pred ceecchh-hHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCccccccc-c-eEEEEEeCCcccHHHHHHH
Q 039167 178 EIFGRKD-EKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNF-E-KRIWVCVSDPFDEFRIARA 254 (923)
Q Consensus 178 ~~vGr~~-~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~-~~~wv~~s~~~~~~~~~~~ 254 (923)
-++|... ..-.....+...+ +.....+.|+|..|+|||.|.+++++. ..... . .++++ +..++...
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~---~~~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~------~~~~f~~~ 78 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENP---GERYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYL------SAEEFIRE 78 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHST---TTSSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEE------EHHHHHHH
T ss_pred CCcCCcHHHHHHHHHHHHhcC---CCCCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceee------cHHHHHHH
Confidence 3456433 2334444454432 224556899999999999999999984 33322 2 34455 34455555
Q ss_pred HHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCCh-hhHHH-hHHhhhcC-CCCcEEEEEecch--------
Q 039167 255 IIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENF-HKWEQ-FNNCLKNC-LYGSKILITTRKE-------- 323 (923)
Q Consensus 255 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-~~~~~-l~~~l~~~-~~gs~iivTtR~~-------- 323 (923)
+...+... . ...+.+.++ .-=+|++||++.-.. ..|.. +...+... ..|-+||+|++..
T Consensus 79 ~~~~~~~~-----~----~~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~ 148 (219)
T PF00308_consen 79 FADALRDG-----E----IEEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLL 148 (219)
T ss_dssp HHHHHHTT-----S----HHHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-
T ss_pred HHHHHHcc-----c----chhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccC
Confidence 65555431 1 122334444 456889999965322 22322 33333221 2466899999642
Q ss_pred -HHHHHhcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHH
Q 039167 324 -AVARIMGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTI 386 (923)
Q Consensus 324 -~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 386 (923)
+....+...-++++++++.++..+++.+++...+-. --++++.-|++.+.+..-.+..+
T Consensus 149 ~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~----l~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 149 PDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE----LPEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT------S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred hhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC----CcHHHHHHHHHhhcCCHHHHHHH
Confidence 334445556689999999999999998877433221 22345666777666655444433
No 110
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.05 E-value=0.00016 Score=81.05 Aligned_cols=167 Identities=18% Similarity=0.163 Sum_probs=101.5
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCccccccc--ceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhc
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDVEKNF--EKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVA 281 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (923)
...+.|+|..|+|||+|++++.+. +.... ..++++ +..++...+...+.... .....+.+.++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~--l~~~~~~~~v~yv------~~~~f~~~~~~~l~~~~-------~~~~~~~~~~~ 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNY--IESNFSDLKVSYM------SGDEFARKAVDILQKTH-------KEIEQFKNEIC 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHH--HHHhCCCCeEEEE------EHHHHHHHHHHHHHHhh-------hHHHHHHHHhc
Confidence 456899999999999999999883 32211 223344 33456666666654310 11223333333
Q ss_pred CCceEEEecCCCCCC--hhhHHHhHHhhhcC-CCCcEEEEEecch---------HHHHHhcccceEeCCCCChHHHHHHH
Q 039167 282 GKKLLLVLDDVWNEN--FHKWEQFNNCLKNC-LYGSKILITTRKE---------AVARIMGSTNIISVNVLSGMECWLVF 349 (923)
Q Consensus 282 ~kr~LlVlDdv~~~~--~~~~~~l~~~l~~~-~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 349 (923)
..-+||+||+.... ....+.+...+... ..|..||+|+... .+...+...-++.+++++.++-.+++
T Consensus 206 -~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 206 -QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred -cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHH
Confidence 34588999996532 12223444444332 2355788887642 22333444568889999999999999
Q ss_pred HHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHHH
Q 039167 350 ESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTIAS 388 (923)
Q Consensus 350 ~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 388 (923)
.+++-..+-. ..--+++...|++.++|.|-.+.-+..
T Consensus 285 ~~~~~~~gl~--~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 285 KKEIKNQNIK--QEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHHhcCCC--CCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 9877432110 012246788899999999877765543
No 111
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.0002 Score=79.18 Aligned_cols=181 Identities=15% Similarity=0.179 Sum_probs=105.0
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCccc------ccccceEE-EEEeCCcccHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDV------EKNFEKRI-WVCVSDPFDEF 249 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------~~~F~~~~-wv~~s~~~~~~ 249 (923)
.+++|.+...+.+...+... .-.+.+.++|+.|+||||+|+.+.+...- ...|...+ -+......+.
T Consensus 17 ~~iig~~~~~~~l~~~i~~~-----~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~- 90 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN-----HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV- 90 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-
Confidence 35789999999999988542 23568899999999999999988763211 01122111 1111111111
Q ss_pred HHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEe-cchHHHHH
Q 039167 250 RIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITT-RKEAVARI 328 (923)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~v~~~ 328 (923)
+..+.+++++.. .-..+++-++++|++.......++.+...+......+.+|++| ....+...
T Consensus 91 ~~i~~l~~~~~~----------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 91 DDIRNLIDQVRI----------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred HHHHHHHHHHhh----------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHH
Confidence 111122221110 0122455689999996555556777776665544455555555 33333222
Q ss_pred -hcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHH
Q 039167 329 -MGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLAT 383 (923)
Q Consensus 329 -~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 383 (923)
......++..+++.++....+...+...+-... .+....+++.++|.+-.+
T Consensus 155 l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~----~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 155 ILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE----DDALHIIAQKADGALRDA 206 (367)
T ss_pred HHhcceeEecCCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHhCCCCHHHH
Confidence 233568999999999998888876643222111 245777888899865533
No 112
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.02 E-value=5.4e-05 Score=83.37 Aligned_cols=179 Identities=17% Similarity=0.139 Sum_probs=99.3
Q ss_pred CCceecchhhHHHHHHHHhcCCCC-------CCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccH
Q 039167 176 ESEIFGRKDEKNELVDRLICENSI-------EQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDE 248 (923)
Q Consensus 176 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 248 (923)
..++.|+++.++++.+.+...-.. +-...+-+.++|++|+|||++|+++++. ....| +.+..
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~---- 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG---- 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch----
Confidence 346899999999998876422110 0123456899999999999999999984 43333 22211
Q ss_pred HHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHh-cCCceEEEecCCCCC-----------ChhhHHHhHHhh---hc--CC
Q 039167 249 FRIARAIIEALTGCLPNFVEFQSLMQHIQKHV-AGKKLLLVLDDVWNE-----------NFHKWEQFNNCL---KN--CL 311 (923)
Q Consensus 249 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~-----------~~~~~~~l~~~l---~~--~~ 311 (923)
..+..... + ........+.+.. ...+.+|+|||++.- +......+...+ .. ..
T Consensus 190 ~~l~~~~~---g-------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 190 SELVRKYI---G-------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred HHHHHHhh---h-------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence 11111100 0 0111112222222 345689999998532 111122233333 21 12
Q ss_pred CCcEEEEEecchHHH-HHh----cccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCCh
Q 039167 312 YGSKILITTRKEAVA-RIM----GSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLP 380 (923)
Q Consensus 312 ~gs~iivTtR~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlP 380 (923)
.+.+||.||...+.. ..+ .-...+.+...+.++..++|..++...... ..-+ ...+++.+.|..
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCC----HHHHHHHcCCCC
Confidence 366788888754321 111 124578999999999999998876443221 1112 356677777753
No 113
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.01 E-value=0.00021 Score=85.27 Aligned_cols=175 Identities=11% Similarity=0.060 Sum_probs=109.7
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCccccc----------------------ccc
Q 039167 178 EIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEK----------------------NFE 235 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----------------------~F~ 235 (923)
+++|.+..++.|..++... .-.+.+.++|+.|+||||+|+.+.+...-.. ++|
T Consensus 16 eiiGqe~v~~~L~~~i~~~-----ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d 90 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDSG-----RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD 90 (824)
T ss_pred HhcCcHHHHHHHHHHHHhC-----CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc
Confidence 6899999999999988643 2346788999999999999998866321100 111
Q ss_pred eEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHH----HHhcCCceEEEecCCCCCChhhHHHhHHhhhcCC
Q 039167 236 KRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQ----KHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCL 311 (923)
Q Consensus 236 ~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~----~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~ 311 (923)
++++...... .++++..... .-..+++-++|||++...+...++.|...+..-.
T Consensus 91 -v~eidaas~~---------------------~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP 148 (824)
T PRK07764 91 -VTEIDAASHG---------------------GVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPP 148 (824)
T ss_pred -EEEecccccC---------------------CHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCC
Confidence 1222211111 1222222111 1134566688999998877788888888887766
Q ss_pred CCcEEEEEec-chHHHHH-hcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHH
Q 039167 312 YGSKILITTR-KEAVARI-MGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLAT 383 (923)
Q Consensus 312 ~gs~iivTtR-~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 383 (923)
..+.+|++|. ...+... ......|++..++.++..+++.+..-..+... -.+....|++.++|.+..+
T Consensus 149 ~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i----d~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 149 EHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV----EPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred CCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 6666665554 3444433 24467899999999998888876542211111 1233567889999977433
No 114
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=0.00026 Score=81.76 Aligned_cols=201 Identities=13% Similarity=0.149 Sum_probs=110.7
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEE-eCCcccHHHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVC-VSDPFDEFRIARAI 255 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-~s~~~~~~~~~~~i 255 (923)
.+++|.+..++.+...+... .-...+.++|+.|+||||+|+.+.+...-...++...|.. +..+...-..-+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~-----ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMD-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 36899999999988888532 2346688999999999999988866321111110000110 00011100111111
Q ss_pred HHHHhC-----CCCCCcCHHHHHHHHHHH----hcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEe-cchHH
Q 039167 256 IEALTG-----CLPNFVEFQSLMQHIQKH----VAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITT-RKEAV 325 (923)
Q Consensus 256 ~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~v 325 (923)
...-.. ........+++...+... ..+++-++|+|++...+....+.+...+......+.+|++| +...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 000000 000111133333222222 23556688999997766667778888887665556655544 44444
Q ss_pred HHH-hcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChH-HHHHH
Q 039167 326 ARI-MGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPL-ATKTI 386 (923)
Q Consensus 326 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 386 (923)
... ......+++.+++.++....+...+-..+.... .+.+..|++.++|..- |+..+
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~----~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQID----ADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCHHHHHHHH
Confidence 432 344678999999999988777765432121111 2347788999999554 44433
No 115
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.01 E-value=0.00012 Score=73.70 Aligned_cols=182 Identities=15% Similarity=0.129 Sum_probs=112.3
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEE-EEeCCcccHHHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIW-VCVSDPFDEFRIARAI 255 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-v~~s~~~~~~~~~~~i 255 (923)
.+++|.+..+.-+.+.+.. ........+|++|.|||+-|..+.....-.+.|.+++- .++|......-+-..+
T Consensus 36 de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Ki 109 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKI 109 (346)
T ss_pred HhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhh
Confidence 3588999999999888864 26778899999999999999888764323455665542 3444432221000000
Q ss_pred HHHHhCCCCCCcCHHHHHHHHHHHh--cCCc-eEEEecCCCCCChhhHHHhHHhhhcCCCCcEE-EEEecchHHHHHh-c
Q 039167 256 IEALTGCLPNFVEFQSLMQHIQKHV--AGKK-LLLVLDDVWNENFHKWEQFNNCLKNCLYGSKI-LITTRKEAVARIM-G 330 (923)
Q Consensus 256 ~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i-ivTtR~~~v~~~~-~ 330 (923)
.+...+.....+.. .-++ -.||||++.....+.|..++..+.....-++. +||+--..+...+ .
T Consensus 110 -----------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 110 -----------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred -----------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 00000000000000 0123 47899999888889999999999876655654 4555433333222 3
Q ss_pred ccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCC
Q 039167 331 STNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGL 379 (923)
Q Consensus 331 ~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~Gl 379 (923)
...-|+.++|.+++...-+...+-..+-..+ .+..+.|++.++|-
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d----~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGVDID----DDALKLIAKISDGD 223 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCc
Confidence 3567999999999988888776643332222 34467888889884
No 116
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=9.6e-05 Score=86.16 Aligned_cols=196 Identities=14% Similarity=0.145 Sum_probs=112.3
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAII 256 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 256 (923)
.+++|.+..++.|..++... .-...+.++|+.|+||||+|+.+.+...-...+. ....++.....+.+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~-----~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEG-----RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhC-----CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHh
Confidence 36899999999998888542 2346678999999999999999876321000000 001111112222222
Q ss_pred HHHhCC-----CCCCcCHHHHHHHHHHH----hcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecc-hHHH
Q 039167 257 EALTGC-----LPNFVEFQSLMQHIQKH----VAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRK-EAVA 326 (923)
Q Consensus 257 ~~l~~~-----~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~ 326 (923)
...... .......+.....+... ..+++-++|+|++...+....+.+...+......+.+|++|.+ ..+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 111100 00111222222221111 1345678999999666556677777777665556666666543 3333
Q ss_pred HH-hcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHH
Q 039167 327 RI-MGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTIA 387 (923)
Q Consensus 327 ~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 387 (923)
.. ......+++..++.++....+...+...+.... .+.+..|++.++|.+..+....
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~----~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE----PGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 32 233568889999999988888776543221111 2457788999999886554443
No 117
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=0.00032 Score=81.46 Aligned_cols=183 Identities=15% Similarity=0.134 Sum_probs=108.7
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCccccc-----------------ccceEEE
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEK-----------------NFEKRIW 239 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----------------~F~~~~w 239 (923)
.+++|.+..++.+...+... .-.+.+.++|+.|+||||+|+.+.+..--.. +++ +++
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~-----rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~D-vie 91 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSN-----KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLD-IIE 91 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCc-EEE
Confidence 35889999999999988643 2456778999999999999998876310000 000 011
Q ss_pred EEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHH-HhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEE-
Q 039167 240 VCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQK-HVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKIL- 317 (923)
Q Consensus 240 v~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii- 317 (923)
+........ .+.+++...+.. -..+++-++|+|++.......+..+...+........+|
T Consensus 92 idaasn~~v------------------d~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifIL 153 (725)
T PRK07133 92 MDAASNNGV------------------DEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFIL 153 (725)
T ss_pred EeccccCCH------------------HHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEE
Confidence 111000000 111122221111 123566799999997766677888887776655455545
Q ss_pred EEecchHHHHH-hcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChH-HHHHHH
Q 039167 318 ITTRKEAVARI-MGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPL-ATKTIA 387 (923)
Q Consensus 318 vTtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~ 387 (923)
+|++...+... ......+++.+++.++....+...+-..+.... .+.+..|++.++|.+- |+..+-
T Consensus 154 aTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id----~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 154 ATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYE----KNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred EcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 45555555432 344679999999999998888765432221111 2346788999988664 444433
No 118
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.97 E-value=0.00075 Score=75.64 Aligned_cols=180 Identities=15% Similarity=0.130 Sum_probs=99.9
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCccccccc--ceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhc
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDVEKNF--EKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVA 281 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (923)
...+.|+|+.|+|||+|++++++. +.... ..+++++. .++...+...+... ..+ .+.+.++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~----~~~~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVSS------EKFTNDFVNALRNN-----KME----EFKEKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHH----HHHHHHH
Confidence 456899999999999999999984 33332 23445533 33444455444321 122 2233333
Q ss_pred CCceEEEecCCCCCChhh--HHHhHHhhhcC-CCCcEEEEEecch-H--------HHHHhcccceEeCCCCChHHHHHHH
Q 039167 282 GKKLLLVLDDVWNENFHK--WEQFNNCLKNC-LYGSKILITTRKE-A--------VARIMGSTNIISVNVLSGMECWLVF 349 (923)
Q Consensus 282 ~kr~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~gs~iivTtR~~-~--------v~~~~~~~~~~~l~~L~~~~~~~lf 349 (923)
+ .-+|||||+....... .+.+...+... ..|..+|+||... . +...+....++++++.+.++-..++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 2 3489999996432111 12233333221 2345688877642 1 1112222357899999999999999
Q ss_pred HHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHH----HHH---HHccCCCHHHHHHHHhh
Q 039167 350 ESLAFVGKSMEERENLEKIGREITRKCKGLPLATKT----IAS---LLRSKNTEKEWQNILKS 405 (923)
Q Consensus 350 ~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~----~~~---~l~~~~~~~~w~~~l~~ 405 (923)
.+.+-..+... -+++...|++.+.|..-.+.- +.. .....-+.+..+.++..
T Consensus 278 ~~~~~~~~~~l----~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~ 336 (405)
T TIGR00362 278 QKKAEEEGLEL----PDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKD 336 (405)
T ss_pred HHHHHHcCCCC----CHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 88774322211 145677788888886654332 221 11112255666666653
No 119
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.0005 Score=77.75 Aligned_cols=183 Identities=13% Similarity=0.121 Sum_probs=107.7
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCccc---c----------------cccceEE
Q 039167 178 EIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDV---E----------------KNFEKRI 238 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~----------------~~F~~~~ 238 (923)
+++|.+..+..+..++... .-...+.++|+.|+||||+|+.+.....- . +.|...+
T Consensus 17 diiGq~~i~~~L~~~i~~~-----~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ 91 (486)
T PRK14953 17 EVIGQEIVVRILKNAVKLQ-----RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLI 91 (486)
T ss_pred HccChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEE
Confidence 5889999999999988543 23456778999999999999988663110 0 0111122
Q ss_pred EEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHH-HhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEE
Q 039167 239 WVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQK-HVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKIL 317 (923)
Q Consensus 239 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 317 (923)
++..+...... +...+...+.. -..+++-++|+|++........+.+...+........+|
T Consensus 92 eidaas~~gvd------------------~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~I 153 (486)
T PRK14953 92 EIDAASNRGID------------------DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFI 153 (486)
T ss_pred EEeCccCCCHH------------------HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEE
Confidence 22221111111 11111111111 124567799999997665566677777776655455555
Q ss_pred EEe-cchHHHHH-hcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHH
Q 039167 318 ITT-RKEAVARI-MGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTIA 387 (923)
Q Consensus 318 vTt-R~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 387 (923)
++| +...+... ......+++.+++.++....+...+-..+-... .+.+..|++.++|.+-.+....
T Consensus 154 l~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id----~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 154 LCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE----EKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 554 43343322 234568999999999988888775532221111 2346778888999776554443
No 120
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=0.00051 Score=77.56 Aligned_cols=180 Identities=14% Similarity=0.111 Sum_probs=111.5
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCccc--ccc----------------cc-eE
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDV--EKN----------------FE-KR 237 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~----------------F~-~~ 237 (923)
.+++|-+...+.+...+... .-..+..++|+.|+||||+|+.+.+..-- ... +. .+
T Consensus 14 deiiGqe~v~~~L~~~I~~g-----rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN-----RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 36899999999998888533 24457789999999999999977653100 000 10 11
Q ss_pred EEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHH----hcCCceEEEecCCCCCChhhHHHhHHhhhcCCCC
Q 039167 238 IWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKH----VAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYG 313 (923)
Q Consensus 238 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 313 (923)
+.+..+... ..+++...+... ..+++-++|+|++...+.+..+.+...+......
T Consensus 89 ~eldaas~~---------------------gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~ 147 (535)
T PRK08451 89 IEMDAASNR---------------------GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSY 147 (535)
T ss_pred EEecccccc---------------------CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCc
Confidence 222211111 122222222210 1245668999999877777788888888766666
Q ss_pred cEEEEEecch-HHHH-HhcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHH
Q 039167 314 SKILITTRKE-AVAR-IMGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTI 386 (923)
Q Consensus 314 s~iivTtR~~-~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 386 (923)
+++|++|.+. .+.. .......+++.+++.++....+.+.+-..+.... .+.+..|++.++|.+--+..+
T Consensus 148 t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~----~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 148 VKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE----PEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred eEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHH
Confidence 7777766553 2222 1234678999999999998888765532221111 245778999999988555443
No 121
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.93 E-value=1e-05 Score=63.10 Aligned_cols=56 Identities=30% Similarity=0.516 Sum_probs=26.1
Q ss_pred CCcEEeccCCCCccccch-hhhCCCCCcEEecCCCccccccCc-cccCCCCCCEEeCCCC
Q 039167 587 HLKYLNLANQMEIERLPE-TLCELYNLEHLNVNCCVKLRELPQ-GIGRLRKLMYLDNECT 644 (923)
Q Consensus 587 ~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~ 644 (923)
+|++|++++|. +..+|. .+..+++|++|++++|. +..+|. .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSST-ESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 34445555444 444442 34445555555555444 344332 3445555555555544
No 122
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.92 E-value=3e-05 Score=82.92 Aligned_cols=89 Identities=15% Similarity=0.099 Sum_probs=61.1
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCc--ccHHHHHHHHHHHHhCCCCCCcCH------HHHHH
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDP--FDEFRIARAIIEALTGCLPNFVEF------QSLMQ 274 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~------~~~~~ 274 (923)
.-+.++|+|++|+|||||++.+++.... .+|+..+|+.+.+. .++.++++.+...+-....+.... .....
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 4467899999999999999999996433 37999999998866 788899988854433221111111 11111
Q ss_pred HHHHH-hcCCceEEEecCC
Q 039167 275 HIQKH-VAGKKLLLVLDDV 292 (923)
Q Consensus 275 ~l~~~-l~~kr~LlVlDdv 292 (923)
..... -.|++++|++|++
T Consensus 246 ~Ae~~~~~GkdVVLlIDEi 264 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSI 264 (415)
T ss_pred HHHHHHHcCCCeEEEEECh
Confidence 12222 3689999999999
No 123
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.92 E-value=0.00016 Score=78.30 Aligned_cols=147 Identities=15% Similarity=0.170 Sum_probs=86.6
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAII 256 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 256 (923)
.+++|.++..+.+..++... .-..++.++|++|+||||+|+.+++. .... ...++.+. ... +..+..+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~--~~~~---~~~i~~~~-~~~-~~i~~~l 88 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNE--VGAE---VLFVNGSD-CRI-DFVRNRL 88 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHH--hCcc---ceEeccCc-ccH-HHHHHHH
Confidence 46899999999999988632 24568888999999999999999883 2222 23344433 111 1111111
Q ss_pred HHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcCCCCcEEEEEecchH-HHHH-hcccc
Q 039167 257 EALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNCLYGSKILITTRKEA-VARI-MGSTN 333 (923)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~-~~~~~ 333 (923)
...... ..+.+.+-++|+||+... ..+..+.+...+.....++++|+||.... +... .....
T Consensus 89 ~~~~~~---------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 89 TRFAST---------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred HHHHHh---------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhce
Confidence 111000 001234568999999654 22333445555655556778998887532 1111 12345
Q ss_pred eEeCCCCChHHHHHHHH
Q 039167 334 IISVNVLSGMECWLVFE 350 (923)
Q Consensus 334 ~~~l~~L~~~~~~~lf~ 350 (923)
.+.++..+.++..+++.
T Consensus 154 ~i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMK 170 (316)
T ss_pred EEEeCCCCHHHHHHHHH
Confidence 67777777777765544
No 124
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.90 E-value=0.00031 Score=75.00 Aligned_cols=214 Identities=13% Similarity=0.086 Sum_probs=128.5
Q ss_pred CCCceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHH
Q 039167 175 DESEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARA 254 (923)
Q Consensus 175 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 254 (923)
.+..++||+.++..+.+++...- +....+.+-|.|.+|.|||.+...++.+..-...=..+++++...-....+++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hl--e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHL--ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhh--hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 45679999999999999997543 3456778999999999999999999986332222134567766655677888888
Q ss_pred HHHHHhCCCCCCcCHHHHHHHHHHHhcCC--ceEEEecCCCCCChhhHHHhHHhhhcCC-CCcEEEEEecch--HH----
Q 039167 255 IIEALTGCLPNFVEFQSLMQHIQKHVAGK--KLLLVLDDVWNENFHKWEQFNNCLKNCL-YGSKILITTRKE--AV---- 325 (923)
Q Consensus 255 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k--r~LlVlDdv~~~~~~~~~~l~~~l~~~~-~gs~iivTtR~~--~v---- 325 (923)
|...+...........+....+.+...+. .+|+|+|.+..-....-+.+...|.+.. +++|+|+.---. +.
T Consensus 226 I~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 88888322111111244455555555443 6899999883221112223334444332 466665532211 11
Q ss_pred HHHhc-----ccceEeCCCCChHHHHHHHHHhhcCCCCc-cchhhHHHHHHHHHHhcCCChHHHHHHHHHH
Q 039167 326 ARIMG-----STNIISVNVLSGMECWLVFESLAFVGKSM-EERENLEKIGREITRKCKGLPLATKTIASLL 390 (923)
Q Consensus 326 ~~~~~-----~~~~~~l~~L~~~~~~~lf~~~a~~~~~~-~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l 390 (923)
..... ....+..+|-+.++-.+.|..+.-..... ..+..++-.|++++.-.|.+--|+.+.-+++
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 11111 13577888999999999998876332221 2223444455555555566666666555444
No 125
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00054 Score=79.77 Aligned_cols=180 Identities=16% Similarity=0.150 Sum_probs=111.0
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcc---------------------cccccc
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGD---------------------VEKNFE 235 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---------------------~~~~F~ 235 (923)
.+++|.+...+.+..++... .-.+.+.++|+.|+||||+|+.+..... ...+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~-----~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATN-----KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 36899999999999998542 2356788999999999999988765311 011233
Q ss_pred eEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcE
Q 039167 236 KRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSK 315 (923)
Q Consensus 236 ~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 315 (923)
. ..+..+......+ .+.+++++... -..+++=++|+|++...+...++.+...+......+.
T Consensus 92 ~-~~ld~~~~~~vd~-Ir~li~~~~~~----------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ti 153 (614)
T PRK14971 92 I-HELDAASNNSVDD-IRNLIEQVRIP----------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAI 153 (614)
T ss_pred e-EEecccccCCHHH-HHHHHHHHhhC----------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeE
Confidence 2 1222222111111 11222221110 0234556889999977777788888888877666666
Q ss_pred EEEEe-cchHHHHH-hcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHH
Q 039167 316 ILITT-RKEAVARI-MGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLAT 383 (923)
Q Consensus 316 iivTt-R~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 383 (923)
+|++| +...+... .....++++.+++.++....+...+-..+-... .+.+..|++.++|..--+
T Consensus 154 fIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~----~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 154 FILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE----PEALNVIAQKADGGMRDA 219 (614)
T ss_pred EEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 66544 44444433 244678999999999998888765532221111 234678899999966433
No 126
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=0.00059 Score=76.69 Aligned_cols=183 Identities=15% Similarity=0.125 Sum_probs=106.9
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccc---------------------cccc
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVE---------------------KNFE 235 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---------------------~~F~ 235 (923)
.+++|.+..++.+..++... .-...+.++|+.|+||||+|+.+.+...-. .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~-----~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFN-----RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 36899999999999988542 234678899999999999998886531100 0111
Q ss_pred eEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcE
Q 039167 236 KRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSK 315 (923)
Q Consensus 236 ~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 315 (923)
.+++.........+ .+.+.+.+. ..-..+++-++|+|++........+.+...+........
T Consensus 92 -~~~i~g~~~~gid~-ir~i~~~l~----------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~ 153 (451)
T PRK06305 92 -VLEIDGASHRGIED-IRQINETVL----------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVK 153 (451)
T ss_pred -eEEeeccccCCHHH-HHHHHHHHH----------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCce
Confidence 11111111111111 111111110 001235677899999965555556667777766555666
Q ss_pred EEEEec-chHHHHH-hcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCCh-HHHHHH
Q 039167 316 ILITTR-KEAVARI-MGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLP-LATKTI 386 (923)
Q Consensus 316 iivTtR-~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~ 386 (923)
+|++|. ...+... ......+++.++++++....+...+-..+... -.+.+..|++.++|.+ .|+..+
T Consensus 154 ~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i----~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 154 FFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIET----SREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred EEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 666664 3333322 23467899999999998888876543221111 1234778899999966 444443
No 127
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.87 E-value=0.00095 Score=75.79 Aligned_cols=181 Identities=13% Similarity=0.106 Sum_probs=101.4
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccc--eEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHh
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFE--KRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHV 280 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 280 (923)
....+.|+|+.|+|||+|++++.+. +...+. .+++++.. ++...+...+... .. ..+.+.+
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~----~~~~~~~ 209 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTSE------KFTNDFVNALRNN-----TM----EEFKEKY 209 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----cH----HHHHHHH
Confidence 3456899999999999999999984 444432 24455332 3334444444221 11 2233333
Q ss_pred cCCceEEEecCCCCCChh--hHHHhHHhhhcC-CCCcEEEEEecch--H-------HHHHhcccceEeCCCCChHHHHHH
Q 039167 281 AGKKLLLVLDDVWNENFH--KWEQFNNCLKNC-LYGSKILITTRKE--A-------VARIMGSTNIISVNVLSGMECWLV 348 (923)
Q Consensus 281 ~~kr~LlVlDdv~~~~~~--~~~~l~~~l~~~-~~gs~iivTtR~~--~-------v~~~~~~~~~~~l~~L~~~~~~~l 348 (923)
+ +.-+|||||+...... ..+.+...+... ..|..||+||... . +...+....++++++.+.++-.++
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 3 3458999999543211 112333333211 2345688887653 1 122233345899999999999999
Q ss_pred HHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHH----HHHHH---HccCCCHHHHHHHHhh
Q 039167 349 FESLAFVGKSMEERENLEKIGREITRKCKGLPLATK----TIASL---LRSKNTEKEWQNILKS 405 (923)
Q Consensus 349 f~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~----~~~~~---l~~~~~~~~w~~~l~~ 405 (923)
+.+.+-..+. . --+++...|++.+.|..-.+. .+..+ ....-+....+.++..
T Consensus 289 l~~~~~~~~~-~---l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~ 348 (450)
T PRK00149 289 LKKKAEEEGI-D---LPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKD 348 (450)
T ss_pred HHHHHHHcCC-C---CCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Confidence 9988743221 1 123567788888888765433 22221 1112256666666654
No 128
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.86 E-value=1.3e-05 Score=62.55 Aligned_cols=58 Identities=26% Similarity=0.451 Sum_probs=50.2
Q ss_pred CcccEEeccccCCcccccccccccc-cccCCCCCcEEeccCCCCccccch-hhhCCCCCcEEecCCCc
Q 039167 556 TCLRALKLEVHNERLPEDFIKEVPT-NIEKLLHLKYLNLANQMEIERLPE-TLCELYNLEHLNVNCCV 621 (923)
Q Consensus 556 ~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~ 621 (923)
++|++|++++|. +..+|. .+..+++|++|++++|. +..+|. .+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~-------l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNK-------LTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSST-------ESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCC-------CCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 578999999765 888874 67889999999999998 888874 78999999999999986
No 129
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.00078 Score=78.41 Aligned_cols=196 Identities=14% Similarity=0.136 Sum_probs=110.6
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAII 256 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 256 (923)
.+++|.+...+.|..++... .-...+.++|+.|+||||+|+.+++...-. ..+.. .......-...+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~-----rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~----~~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISN-----RIAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKP----TPEPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcC-----CCCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCC----CCCCCcccHHHHHHh
Confidence 35889999999998888643 123578899999999999999997742111 11000 000111111111111
Q ss_pred HHHhC-----CCCCCcCHHHHHHHHHHH----hcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecc-hHHH
Q 039167 257 EALTG-----CLPNFVEFQSLMQHIQKH----VAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRK-EAVA 326 (923)
Q Consensus 257 ~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~ 326 (923)
..... ........+.....+... ..+++-++|+|++...+...++.+...+........+|++|.+ ..+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 11110 000111222333222211 1355668999999776666788888887765555555555543 3333
Q ss_pred HH-hcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHH
Q 039167 327 RI-MGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTI 386 (923)
Q Consensus 327 ~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 386 (923)
.. ......+++..++.++....+...+-..+.... .+.+..|++.++|.+..+...
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is----~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE----PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 32 234678889999999888777765532211111 234778899999987655443
No 130
>PRK06620 hypothetical protein; Validated
Probab=97.85 E-value=0.00073 Score=67.83 Aligned_cols=134 Identities=13% Similarity=0.033 Sum_probs=77.8
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCc
Q 039167 205 HIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKK 284 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 284 (923)
+.+.|+|++|+|||+|++.+.+... . .++. ..+.. + +.. +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~~---------------------~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFFN---------------------E-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhhc---------------------h-------hHH-hcC
Confidence 6799999999999999999887421 1 1111 00000 0 011 133
Q ss_pred eEEEecCCCCCChhhHHHhHHhhhcC-CCCcEEEEEecchH-------HHHHhcccceEeCCCCChHHHHHHHHHhhcCC
Q 039167 285 LLLVLDDVWNENFHKWEQFNNCLKNC-LYGSKILITTRKEA-------VARIMGSTNIISVNVLSGMECWLVFESLAFVG 356 (923)
Q Consensus 285 ~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTtR~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~ 356 (923)
-++++||+..... ..+...+... ..|..||+|++... ....+...-++++++++.++-..++.+.+...
T Consensus 87 d~lliDdi~~~~~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 87 NAFIIEDIENWQE---PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CEEEEeccccchH---HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 5789999953211 1222222211 34668999998532 22333445589999999999888887765321
Q ss_pred CCccchhhHHHHHHHHHHhcCCChHHH
Q 039167 357 KSMEERENLEKIGREITRKCKGLPLAT 383 (923)
Q Consensus 357 ~~~~~~~~~~~~~~~i~~~c~GlPLai 383 (923)
+ .. --+++..-|++.+.|.--.+
T Consensus 164 ~-l~---l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 164 S-VT---ISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred C-CC---CCHHHHHHHHHHccCCHHHH
Confidence 1 11 11355677777777754444
No 131
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.84 E-value=0.0032 Score=71.77 Aligned_cols=155 Identities=12% Similarity=0.096 Sum_probs=89.7
Q ss_pred EEEEEEecCCChHHHHHHHHhcCccccccc--ceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcC
Q 039167 205 HIISLVGMGGIGKTTLAQFAYNNGDVEKNF--EKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAG 282 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 282 (923)
..+.|+|..|+|||.|++++++. ....+ ..+++++. .++...+...+... . ...+.+.++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yita------eef~~el~~al~~~-----~----~~~f~~~y~~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVSS------EEFTNEFINSIRDG-----K----GDSFRRRYRE 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHhc-----c----HHHHHHHhhc
Confidence 45899999999999999999984 33322 23445533 33444444433211 1 1123333332
Q ss_pred CceEEEecCCCCCCh-hhH-HHhHHhhhcC-CCCcEEEEEecch---------HHHHHhcccceEeCCCCChHHHHHHHH
Q 039167 283 KKLLLVLDDVWNENF-HKW-EQFNNCLKNC-LYGSKILITTRKE---------AVARIMGSTNIISVNVLSGMECWLVFE 350 (923)
Q Consensus 283 kr~LlVlDdv~~~~~-~~~-~~l~~~l~~~-~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 350 (923)
-=+|||||+..... ..| +.+...+... ..|..|||||+.. .+...+...-+++|.+.+.+.-.+++.
T Consensus 378 -~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 378 -MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred -CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 35889999965422 222 2233333322 2355688888852 233334456689999999999999998
Q ss_pred HhhcCCCCccchhhHHHHHHHHHHhcCCChH
Q 039167 351 SLAFVGKSMEERENLEKIGREITRKCKGLPL 381 (923)
Q Consensus 351 ~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPL 381 (923)
+++-...-... .++..-|++.+.+..-
T Consensus 457 kka~~r~l~l~----~eVi~yLa~r~~rnvR 483 (617)
T PRK14086 457 KKAVQEQLNAP----PEVLEFIASRISRNIR 483 (617)
T ss_pred HHHHhcCCCCC----HHHHHHHHHhccCCHH
Confidence 87643322111 3456666666665543
No 132
>CHL00181 cbbX CbbX; Provisional
Probab=97.83 E-value=0.0013 Score=69.32 Aligned_cols=134 Identities=14% Similarity=0.086 Sum_probs=72.2
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCc
Q 039167 205 HIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKK 284 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 284 (923)
..+.++|++|+||||+|+.+++.....+.-...-|+.++. .++ .....+.. .......+.+. ..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l----~~~~~g~~-----~~~~~~~l~~a---~g 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDL----VGQYIGHT-----APKTKEVLKKA---MG 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHH----HHHHhccc-----hHHHHHHHHHc---cC
Confidence 3578899999999999999977311111111122444442 122 11111110 11112222222 23
Q ss_pred eEEEecCCCCC---------ChhhHHHhHHhhhcCCCCcEEEEEecchHHHHHh--------cccceEeCCCCChHHHHH
Q 039167 285 LLLVLDDVWNE---------NFHKWEQFNNCLKNCLYGSKILITTRKEAVARIM--------GSTNIISVNVLSGMECWL 347 (923)
Q Consensus 285 ~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~--------~~~~~~~l~~L~~~~~~~ 347 (923)
-+|+||++..- ..+..+.+...+.....+.+||+++....+.... .-...+.+++++.++..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 59999999531 1122333444454444556777777654433211 114578999999999888
Q ss_pred HHHHhhc
Q 039167 348 VFESLAF 354 (923)
Q Consensus 348 lf~~~a~ 354 (923)
++...+-
T Consensus 204 I~~~~l~ 210 (287)
T CHL00181 204 IAKIMLE 210 (287)
T ss_pred HHHHHHH
Confidence 8877653
No 133
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.83 E-value=0.00091 Score=66.54 Aligned_cols=126 Identities=18% Similarity=0.226 Sum_probs=72.2
Q ss_pred CCCCceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHH
Q 039167 174 IDESEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIAR 253 (923)
Q Consensus 174 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 253 (923)
+.-..++|.|...+.|++-...-- .+....-+-++|..|.|||++++++.+...-++ .--|.+.+.
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl--~G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~-------- 89 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFL--QGLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKE-------- 89 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHH--cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHH--------
Confidence 445579999999988876443221 122345677899999999999999987322111 112222221
Q ss_pred HHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcCC---C-CcEEEEEecchHHH
Q 039167 254 AIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNCL---Y-GSKILITTRKEAVA 326 (923)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~---~-gs~iivTtR~~~v~ 326 (923)
+..+...+.+.++ -+..||+|.+||+--+ ....+..+++.+..+- + ...|..||..++..
T Consensus 90 -----------~L~~l~~l~~~l~--~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 90 -----------DLGDLPELLDLLR--DRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred -----------HhccHHHHHHHHh--cCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 0111222222222 1357999999998432 3356777888776441 2 33445565555543
No 134
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.81 E-value=0.0011 Score=76.12 Aligned_cols=178 Identities=12% Similarity=0.066 Sum_probs=110.4
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCccccc--------------------ccce
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEK--------------------NFEK 236 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~ 236 (923)
.+++|-+..++.+..++... .-.+.+.++|+.|+||||+|+.+.+...-.. +++.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~-----~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv 90 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESN-----KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDV 90 (563)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCe
Confidence 36899999999999998643 2456788999999999999999877421110 1111
Q ss_pred EEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHH---HH-HhcCCceEEEecCCCCCChhhHHHhHHhhhcCCC
Q 039167 237 RIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHI---QK-HVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLY 312 (923)
Q Consensus 237 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l---~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 312 (923)
+++.... ....+...... .. -..+++-++|+|++...+...++.+...+.....
T Consensus 91 -~~idgas---------------------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~ 148 (563)
T PRK06647 91 -IEIDGAS---------------------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPP 148 (563)
T ss_pred -EEecCcc---------------------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCC
Confidence 1111110 11122222211 11 1245667899999977766677788877776555
Q ss_pred CcEEEEEecc-hHHHHH-hcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHH
Q 039167 313 GSKILITTRK-EAVARI-MGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKT 385 (923)
Q Consensus 313 gs~iivTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 385 (923)
...+|++|.. ..+... ......+++.+++.++..+.+...+...+... -.+.+..|++.++|.+-.+..
T Consensus 149 ~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~i----d~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 149 YIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKY----EDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred CEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 6666665543 344332 23456799999999998888877653322111 124467788899997754433
No 135
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.80 E-value=0.0013 Score=73.88 Aligned_cols=159 Identities=13% Similarity=0.096 Sum_probs=91.8
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCccccccc-c-eEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhc
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDVEKNF-E-KRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVA 281 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (923)
...+.|+|..|+|||+|++++++. +...+ . .++|++. .++...+...+... ..+ .+.+..+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~----~f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLN----EFREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHH----HHHHHHH
Confidence 446999999999999999999984 33332 2 3456543 34555555554321 111 2333333
Q ss_pred CCceEEEecCCCCCC-hhhH-HHhHHhhhcC-CCCcEEEEEec-chHH--------HHHhcccceEeCCCCChHHHHHHH
Q 039167 282 GKKLLLVLDDVWNEN-FHKW-EQFNNCLKNC-LYGSKILITTR-KEAV--------ARIMGSTNIISVNVLSGMECWLVF 349 (923)
Q Consensus 282 ~kr~LlVlDdv~~~~-~~~~-~~l~~~l~~~-~~gs~iivTtR-~~~v--------~~~~~~~~~~~l~~L~~~~~~~lf 349 (923)
.+.-+|++||+.... ...+ +.+...+... ..|..||+||. ...- ...+...-++++++.+.+.-.+++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 456689999996321 1111 2233333211 23457888885 3221 112233458899999999999999
Q ss_pred HHhhcCCCCccchhhHHHHHHHHHHhcCCChHHH
Q 039167 350 ESLAFVGKSMEERENLEKIGREITRKCKGLPLAT 383 (923)
Q Consensus 350 ~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 383 (923)
.+.+-.... .. -.++...|++.+.|.--.+
T Consensus 273 ~~~~~~~~~-~l---~~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 273 RKMLEIEHG-EL---PEEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHHHhcCC-CC---CHHHHHHHHhccccCHHHH
Confidence 887643221 11 1355777888887754433
No 136
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=1e-05 Score=80.53 Aligned_cols=229 Identities=17% Similarity=0.027 Sum_probs=125.3
Q ss_pred EEEeCCCCCCCc-cchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchhh-hCCCCC
Q 039167 535 SLLLESTKHSSV-ILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPETL-CELYNL 612 (923)
Q Consensus 535 ~L~l~~~~~~~~-~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i-~~L~~L 612 (923)
.+.+.++.+... ....+-..+..++.|||.+|. -+...++-..+.+|++|++|+|+.|. +..--.++ -.+.+|
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~----iSdWseI~~ile~lP~l~~LNls~N~-L~s~I~~lp~p~~nl 123 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNL----ISDWSEIGAILEQLPALTTLNLSCNS-LSSDIKSLPLPLKNL 123 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccch----hccHHHHHHHHhcCccceEeeccCCc-CCCccccCcccccce
Confidence 444445544332 122223567888999999877 33344454556788999999999887 43221111 245688
Q ss_pred cEEecCCCccc-cccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEecccCCcccccccccCCCCCCCce
Q 039167 613 EHLNVNCCVKL-RELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLNLLRDCR 691 (923)
Q Consensus 613 ~~L~L~~~~~l-~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~ 691 (923)
++|.|.++..- ......+..+++++.|+++.| +++.+ ..-..... ..-.++..+..+..+.
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N-~~rq~-------------n~Dd~c~e----~~s~~v~tlh~~~c~~ 185 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN-SLRQL-------------NLDDNCIE----DWSTEVLTLHQLPCLE 185 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccc-hhhhh-------------cccccccc----ccchhhhhhhcCCcHH
Confidence 89988887611 233445667777788877766 22211 11000000 0000111111111000
Q ss_pred EeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCccccccc
Q 039167 692 IRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKNWIMSL 771 (923)
Q Consensus 692 i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l 771 (923)
..+ .....--..++++.++.+..+.+.. ...-++..++|.+..|++..+.....+. -..+..+
T Consensus 186 ~~w--------~~~~~l~r~Fpnv~sv~v~e~PlK~--------~s~ek~se~~p~~~~LnL~~~~idswas-vD~Ln~f 248 (418)
T KOG2982|consen 186 QLW--------LNKNKLSRIFPNVNSVFVCEGPLKT--------ESSEKGSEPFPSLSCLNLGANNIDSWAS-VDALNGF 248 (418)
T ss_pred HHH--------HHHHhHHhhcccchheeeecCcccc--------hhhcccCCCCCcchhhhhcccccccHHH-HHHHcCC
Confidence 000 0111112245778888887775422 2333456677888888887766443111 1224478
Q ss_pred ccccEEeEeCCCCCCCCCC-------CCCCCCccceecc
Q 039167 772 TNLRFLGLHEWRNCEHLPP-------LGKLPSLESLYIA 803 (923)
Q Consensus 772 ~~L~~L~L~~~~~~~~l~~-------l~~L~~L~~L~L~ 803 (923)
+.|+-|.+.++..++.+.. ++.|++++.|+=+
T Consensus 249 ~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 249 PQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred chhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 9999999999987776543 5678888888654
No 137
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.79 E-value=0.00012 Score=79.73 Aligned_cols=120 Identities=18% Similarity=0.167 Sum_probs=76.5
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAII 256 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 256 (923)
.++++.++..+.+...|.. .+.+.++|++|+|||++|+.+++.......|+.+.||.++...+..++...+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~--------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC
Confidence 4578889999999998863 34678899999999999999988544445678888999998887666543221
Q ss_pred HHHhCCCCCCc-CHHHHHHHHHHHh--cCCceEEEecCCCCCChhh-HHHhHHhhh
Q 039167 257 EALTGCLPNFV-EFQSLMQHIQKHV--AGKKLLLVLDDVWNENFHK-WEQFNNCLK 308 (923)
Q Consensus 257 ~~l~~~~~~~~-~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~~-~~~l~~~l~ 308 (923)
....... ......+.+.+.. .++++++|+|++...+.+. +..+...+.
T Consensus 247 ----P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 247 ----PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred ----CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 0000000 0011222233322 2468999999996654333 444444443
No 138
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.78 E-value=2.9e-05 Score=55.28 Aligned_cols=39 Identities=36% Similarity=0.545 Sum_probs=24.5
Q ss_pred CCcEEeccCCCCccccchhhhCCCCCcEEecCCCccccccC
Q 039167 587 HLKYLNLANQMEIERLPETLCELYNLEHLNVNCCVKLRELP 627 (923)
Q Consensus 587 ~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp 627 (923)
+|++|++++|. ++.+|..+++|++|++|++++|. +..+|
T Consensus 2 ~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp T-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred cceEEEccCCC-CcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 56677777776 66676666777777777777765 55443
No 139
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.78 E-value=0.00029 Score=85.33 Aligned_cols=152 Identities=15% Similarity=0.174 Sum_probs=85.0
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccc------cceEEE-EEeCCcccHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKN------FEKRIW-VCVSDPFDEF 249 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~w-v~~s~~~~~~ 249 (923)
..++||+.++.+++..|... ...-+.++|++|+||||+|+.+.+. +... .+..+| +.++.-
T Consensus 187 d~~iGr~~ei~~~i~~l~r~------~~~n~lLvG~pGvGKTal~~~La~~--i~~~~v~~~l~~~~i~~l~l~~l---- 254 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRR------RQNNPILTGEAGVGKTAVVEGLALR--IAAGDVPPALRNVRLLSLDLGLL---- 254 (852)
T ss_pred CcccCCHHHHHHHHHHHhcC------CcCceeEECCCCCCHHHHHHHHHHH--HhhCCCCccccCCeEEEeehhhh----
Confidence 46899999999999988654 2334569999999999999999874 2111 123333 222210
Q ss_pred HHHHHHHHHHhCCCCCCcCHHH-HHHHHHHHh-cCCceEEEecCCCCCC-------hhhH-HHhHHhhhcCCCCcEEEEE
Q 039167 250 RIARAIIEALTGCLPNFVEFQS-LMQHIQKHV-AGKKLLLVLDDVWNEN-------FHKW-EQFNNCLKNCLYGSKILIT 319 (923)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l-~~kr~LlVlDdv~~~~-------~~~~-~~l~~~l~~~~~gs~iivT 319 (923)
........+.+. +...+.+.- .+++.+|++|++..-. ..+. ..+...+..+ .-++|-|
T Consensus 255 ----------~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--~l~~Iga 322 (852)
T TIGR03345 255 ----------QAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--ELRTIAA 322 (852)
T ss_pred ----------hcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--CeEEEEe
Confidence 000000011111 122222221 2468999999985421 1111 1233333322 3456666
Q ss_pred ecchHHHHH-------hcccceEeCCCCChHHHHHHHHHh
Q 039167 320 TRKEAVARI-------MGSTNIISVNVLSGMECWLVFESL 352 (923)
Q Consensus 320 tR~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~ 352 (923)
|...+.... ......+.+++++.++..+++...
T Consensus 323 TT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 323 TTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred cCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 665332111 123468999999999999997543
No 140
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.76 E-value=0.0024 Score=66.68 Aligned_cols=167 Identities=16% Similarity=0.189 Sum_probs=102.8
Q ss_pred CCceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHH
Q 039167 176 ESEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAI 255 (923)
Q Consensus 176 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 255 (923)
++.+.+|+.....+..++...+ ..-+..|-|+|-.|.|||.+.+++++... ...+|+++-+.++..-++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~---~~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNS---CTIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCC---cccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHH
Confidence 4578899999999999886543 12355679999999999999999998542 246899999999999999999
Q ss_pred HHHHhCCCCC--CcC-----HHHHHHHHHH--Hh--cCCceEEEecCCCCCChhhHHH--hHHhhh--c-CCCCcEEEEE
Q 039167 256 IEALTGCLPN--FVE-----FQSLMQHIQK--HV--AGKKLLLVLDDVWNENFHKWEQ--FNNCLK--N-CLYGSKILIT 319 (923)
Q Consensus 256 ~~~l~~~~~~--~~~-----~~~~~~~l~~--~l--~~kr~LlVlDdv~~~~~~~~~~--l~~~l~--~-~~~gs~iivT 319 (923)
+.+......+ ... .......+.+ .. +++.++||||++..- .+.+. +...+. . .....-+|++
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~l--rD~~a~ll~~l~~L~el~~~~~i~iil 154 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADAL--RDMDAILLQCLFRLYELLNEPTIVIIL 154 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhh--hccchHHHHHHHHHHHHhCCCceEEEE
Confidence 9998522111 111 1122223333 12 246899999999432 22221 111111 1 1112334444
Q ss_pred ecch--HHH-HHhccc--ceEeCCCCChHHHHHHHHHh
Q 039167 320 TRKE--AVA-RIMGST--NIISVNVLSGMECWLVFESL 352 (923)
Q Consensus 320 tR~~--~v~-~~~~~~--~~~~l~~L~~~~~~~lf~~~ 352 (923)
+-.. ... ..+|.. .++..+.-+.++..+++.+.
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 4332 221 123443 35667777888888887653
No 141
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.76 E-value=0.00055 Score=71.55 Aligned_cols=161 Identities=13% Similarity=0.062 Sum_probs=78.2
Q ss_pred ceecchhhHHHHHHH---Hhc------CCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccH
Q 039167 178 EIFGRKDEKNELVDR---LIC------ENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDE 248 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~---L~~------~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 248 (923)
.++|.+..+++|.+. ... ..-...+...-+.++|++|+||||+|+.+++.......-....++.++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 477877766665433 211 0000123456688999999999999999976311001111112333322
Q ss_pred HHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCC--------hhhHHHhHHhhhcCCCCcEEEEEe
Q 039167 249 FRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNEN--------FHKWEQFNNCLKNCLYGSKILITT 320 (923)
Q Consensus 249 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivTt 320 (923)
.++.. ..- . .........+.+. ..-+|++|++..-. .+..+.+...+........+|+++
T Consensus 83 ~~l~~----~~~---g--~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 83 ADLVG----EYI---G--HTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred HHhhh----hhc---c--chHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 11111 000 0 0011112222221 23489999995421 112233333333333333555665
Q ss_pred cchHHHH------Hh-cc-cceEeCCCCChHHHHHHHHHhhc
Q 039167 321 RKEAVAR------IM-GS-TNIISVNVLSGMECWLVFESLAF 354 (923)
Q Consensus 321 R~~~v~~------~~-~~-~~~~~l~~L~~~~~~~lf~~~a~ 354 (923)
...+... .+ .. ...+++++++.++-.+++.+.+.
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 4433211 11 11 24688899999988888887653
No 142
>PF14516 AAA_35: AAA-like domain
Probab=97.75 E-value=0.01 Score=64.23 Aligned_cols=202 Identities=13% Similarity=0.086 Sum_probs=120.0
Q ss_pred CCCceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCc-----ccHH
Q 039167 175 DESEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDP-----FDEF 249 (923)
Q Consensus 175 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-----~~~~ 249 (923)
+.+..|.|...-+++.+.+..+ -..+.|.|+..+|||+|...+.+..+. ..| .++++++..- .+..
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~~~~~~~~~ 79 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLGSAIFSDLE 79 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCCCcccCCHH
Confidence 3445678886677777777532 358999999999999999998874322 233 4557775541 2456
Q ss_pred HHHHHHHHHHhCCCCC-----------CcCHHHHHHHHHHHh---cCCceEEEecCCCCCCh------hhHHHhHHhhhc
Q 039167 250 RIARAIIEALTGCLPN-----------FVEFQSLMQHIQKHV---AGKKLLLVLDDVWNENF------HKWEQFNNCLKN 309 (923)
Q Consensus 250 ~~~~~i~~~l~~~~~~-----------~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~------~~~~~l~~~l~~ 309 (923)
..++.++..+.....- ..........+.+.+ .+++.+|+||+|..--. +-+..++.....
T Consensus 80 ~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~ 159 (331)
T PF14516_consen 80 QFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQ 159 (331)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHh
Confidence 6666666666532110 111223333444432 26899999999843211 123333333222
Q ss_pred CC----CCcEEEEEecchHHHHH-------hcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCC
Q 039167 310 CL----YGSKILITTRKEAVARI-------MGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKG 378 (923)
Q Consensus 310 ~~----~gs~iivTtR~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G 378 (923)
.. ..+-.+|.......... +.....++|++++.+|...|....-.. ..+ ...++|...+||
T Consensus 160 ~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-----~~~---~~~~~l~~~tgG 231 (331)
T PF14516_consen 160 RKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-----FSQ---EQLEQLMDWTGG 231 (331)
T ss_pred cccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-----CCH---HHHHHHHHHHCC
Confidence 11 12222332222111111 122357899999999999998875321 111 127889999999
Q ss_pred ChHHHHHHHHHHccC
Q 039167 379 LPLATKTIASLLRSK 393 (923)
Q Consensus 379 lPLai~~~~~~l~~~ 393 (923)
+|.-+..++..+...
T Consensus 232 hP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 232 HPYLVQKACYLLVEE 246 (331)
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999999664
No 143
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.0012 Score=76.68 Aligned_cols=185 Identities=12% Similarity=0.121 Sum_probs=108.7
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCccccc--------------------ccce
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEK--------------------NFEK 236 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~ 236 (923)
.+++|.+...+.|...+... .-.+.+.++|+.|+||||+|+.+.+...-.. ++|
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d- 89 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTG-----RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVD- 89 (576)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCC-
Confidence 36899999999999888542 2346778999999999999988876311000 111
Q ss_pred EEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHH-HhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcE
Q 039167 237 RIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQK-HVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSK 315 (923)
Q Consensus 237 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 315 (923)
.+.+......... +..++...+.. -..+++-++|+|++...+....+.+...+........
T Consensus 90 ~~eid~~s~~~v~------------------~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~ 151 (576)
T PRK14965 90 VFEIDGASNTGVD------------------DIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVK 151 (576)
T ss_pred eeeeeccCccCHH------------------HHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeE
Confidence 1111111111111 11111111111 1234556899999977666677788888876555666
Q ss_pred EEEEe-cchHHHHH-hcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCCh-HHHHHHHHH
Q 039167 316 ILITT-RKEAVARI-MGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLP-LATKTIASL 389 (923)
Q Consensus 316 iivTt-R~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~~~~ 389 (923)
+|++| ....+... ......+++.+++.++....+...+-..+.... .+....|++.++|.. .|+..+-..
T Consensus 152 fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~----~~al~~la~~a~G~lr~al~~Ldql 224 (576)
T PRK14965 152 FIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS----DAALALVARKGDGSMRDSLSTLDQV 224 (576)
T ss_pred EEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 66544 44545433 234678899999999888777664422221111 234677888998865 455554333
No 144
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.71 E-value=0.0055 Score=65.33 Aligned_cols=196 Identities=15% Similarity=0.127 Sum_probs=113.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCc---cc----------ccccceEEEEEeCC
Q 039167 178 EIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNG---DV----------EKNFEKRIWVCVSD 244 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~~----------~~~F~~~~wv~~s~ 244 (923)
+++|.+...+.+...+... .-....-++|+.|+||+++|..+.+.. .. ...++-..|+.-..
T Consensus 5 ~iiGq~~~~~~L~~~i~~~-----rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~ 79 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQN-----RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTY 79 (314)
T ss_pred HhCCHHHHHHHHHHHHHhC-----CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccc
Confidence 5789999999999988543 135789999999999999997775421 00 11122233442110
Q ss_pred cccHHHHHHHHHHHHh--CCCCCCcCHHHHHHHHHHHh-----cCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEE
Q 039167 245 PFDEFRIARAIIEALT--GCLPNFVEFQSLMQHIQKHV-----AGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKIL 317 (923)
Q Consensus 245 ~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 317 (923)
..+-..+-..-++..+ .........++. +.+.+.+ .+++-++|+|++...+......+...+.... .+.+|
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fI 157 (314)
T PRK07399 80 QHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLI 157 (314)
T ss_pred cccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEE
Confidence 0000000001111111 011111222332 2333333 3567789999997777777888888886555 34555
Q ss_pred EEec-chHHHHH-hcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHH
Q 039167 318 ITTR-KEAVARI-MGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTIA 387 (923)
Q Consensus 318 vTtR-~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 387 (923)
++|. ...+... ......+++.++++++..+.+........ . ......++..++|.|..+..+.
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~---~----~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI---L----NINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc---c----hhHHHHHHHHcCCCHHHHHHHH
Confidence 5554 4444332 34578999999999999999987642111 0 1113578899999997665443
No 145
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.71 E-value=8.7e-05 Score=79.87 Aligned_cols=65 Identities=22% Similarity=0.389 Sum_probs=35.5
Q ss_pred hhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchhhhCCCCCcEEecCCCccccccCc
Q 039167 552 FDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPETLCELYNLEHLNVNCCVKLRELPQ 628 (923)
Q Consensus 552 ~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~ 628 (923)
+..+.+++.|++++|. +..+|. + -.+|+.|.+++|..+..+|..+. .+|+.|++++|..+..+|.
T Consensus 48 ~~~~~~l~~L~Is~c~-------L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDCD-------IESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHHhcCCCEEEeCCCC-------CcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc
Confidence 3445666666666443 455541 1 12466666666655666665442 3566666666654555554
No 146
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.69 E-value=0.00077 Score=71.03 Aligned_cols=132 Identities=14% Similarity=0.111 Sum_probs=71.5
Q ss_pred EEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCce
Q 039167 206 IISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKL 285 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 285 (923)
-+.++|++|+||||+|+.+.............-|+.++. .++ ...+.+.. .......+.+. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l----~~~~~g~~-----~~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDL----VGQYIGHT-----APKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHH----hHhhcccc-----hHHHHHHHHHc---cCc
Confidence 578999999999999977765311111111123444442 112 22221111 11222222222 336
Q ss_pred EEEecCCCCC---------ChhhHHHhHHhhhcCCCCcEEEEEecchHHHHHhc--------ccceEeCCCCChHHHHHH
Q 039167 286 LLVLDDVWNE---------NFHKWEQFNNCLKNCLYGSKILITTRKEAVARIMG--------STNIISVNVLSGMECWLV 348 (923)
Q Consensus 286 LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~--------~~~~~~l~~L~~~~~~~l 348 (923)
+|+||++..- ..+.++.+...+.....+.+||+++.......... -...+++++++.+|-.++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8999999521 11233445555555555667777765433222111 135789999999999998
Q ss_pred HHHhh
Q 039167 349 FESLA 353 (923)
Q Consensus 349 f~~~a 353 (923)
+...+
T Consensus 204 ~~~~l 208 (284)
T TIGR02880 204 AGLML 208 (284)
T ss_pred HHHHH
Confidence 87765
No 147
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.68 E-value=0.00035 Score=77.28 Aligned_cols=178 Identities=15% Similarity=0.153 Sum_probs=96.8
Q ss_pred CCceecchhhHHHHHHHHhcCCC-------CCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccH
Q 039167 176 ESEIFGRKDEKNELVDRLICENS-------IEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDE 248 (923)
Q Consensus 176 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 248 (923)
..++.|+++.++++.+.+...-. .+-...+-|.++|++|+|||++|+++++. .... |+.++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~---- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG---- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh----
Confidence 34689999999999887632110 01134567899999999999999999983 3322 232221
Q ss_pred HHHHHHHHHHHhCCCCCCcCHHHHHHHHHHH-hcCCceEEEecCCCCC-----------ChhhHHHhHHhhhc-----CC
Q 039167 249 FRIARAIIEALTGCLPNFVEFQSLMQHIQKH-VAGKKLLLVLDDVWNE-----------NFHKWEQFNNCLKN-----CL 311 (923)
Q Consensus 249 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~-----------~~~~~~~l~~~l~~-----~~ 311 (923)
..+.. ...+ ........+.+. -...+.+|+|||+..- +......+...+.. ..
T Consensus 199 ~~l~~----~~~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 199 SELVQ----KFIG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred HHHhH----hhcc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 11111 1000 011112222222 2345689999999431 11112223333321 11
Q ss_pred CCcEEEEEecchHHHH-Hh---c-ccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCC
Q 039167 312 YGSKILITTRKEAVAR-IM---G-STNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGL 379 (923)
Q Consensus 312 ~gs~iivTtR~~~v~~-~~---~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~Gl 379 (923)
.+..||.||...+... .+ + -...+++++.+.++..++|..+.....- ...-+ ...+++.+.|.
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~-~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL-ADDVD----LEELAELTEGA 336 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC-CCcCC----HHHHHHHcCCC
Confidence 3557777777543221 11 1 1457999999999999999877643221 11122 34566666664
No 148
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.65 E-value=0.00057 Score=82.22 Aligned_cols=155 Identities=19% Similarity=0.222 Sum_probs=85.7
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcc---ccccc-ceEEEEEeCCcccHHHHHH
Q 039167 178 EIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGD---VEKNF-EKRIWVCVSDPFDEFRIAR 253 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~F-~~~~wv~~s~~~~~~~~~~ 253 (923)
.++||++++++++..|... ...-+.++|++|+|||++|+.+.+... +-..+ +..+|. + +...+..
T Consensus 183 ~~igr~~ei~~~~~~L~~~------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~a 251 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRR------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLLA 251 (731)
T ss_pred cccCcHHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHhh
Confidence 6899999999999988644 233457999999999999999987421 11111 233442 1 1111110
Q ss_pred HHHHHHhCCCCCCcCHHHHHHHHHHHh-cCCceEEEecCCCCC---------ChhhHHHhHHhhhcCCCCcEEEEEecch
Q 039167 254 AIIEALTGCLPNFVEFQSLMQHIQKHV-AGKKLLLVLDDVWNE---------NFHKWEQFNNCLKNCLYGSKILITTRKE 323 (923)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtR~~ 323 (923)
+. ....+.++....+.+.+ ..++.+|++|++..- +.+.-+.+...+..+ .-++|-+|..+
T Consensus 252 -------~~-~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g--~i~~IgaTt~~ 321 (731)
T TIGR02639 252 -------GT-KYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG--KLRCIGSTTYE 321 (731)
T ss_pred -------hc-cccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC--CeEEEEecCHH
Confidence 00 00112222233333333 346889999998521 011223344444322 23455555542
Q ss_pred HHHH------Hh-cccceEeCCCCChHHHHHHHHHhh
Q 039167 324 AVAR------IM-GSTNIISVNVLSGMECWLVFESLA 353 (923)
Q Consensus 324 ~v~~------~~-~~~~~~~l~~L~~~~~~~lf~~~a 353 (923)
+... .+ .....+++++++.++..+++....
T Consensus 322 e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 322 EYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 2211 11 234689999999999999988543
No 149
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.64 E-value=0.0016 Score=72.87 Aligned_cols=153 Identities=18% Similarity=0.110 Sum_probs=85.1
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGK 283 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 283 (923)
...+.|+|+.|+|||+|++++.+. +......+++++ ...+...+...+... . ...+++..+ .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~------~~~f~~~~~~~l~~~-----~----~~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVR------SELFTEHLVSAIRSG-----E----MQRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEee------HHHHHHHHHHHHhcc-----h----HHHHHHHcc-c
Confidence 457899999999999999999984 322222344553 233444444444321 1 112333333 4
Q ss_pred ceEEEecCCCCCChhhH--HHhHHhhhcC-CCCcEEEEEecch---------HHHHHhcccceEeCCCCChHHHHHHHHH
Q 039167 284 KLLLVLDDVWNENFHKW--EQFNNCLKNC-LYGSKILITTRKE---------AVARIMGSTNIISVNVLSGMECWLVFES 351 (923)
Q Consensus 284 r~LlVlDdv~~~~~~~~--~~l~~~l~~~-~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 351 (923)
.-+|++||+.......+ +.+...+... ..|..||+||... .+...+....++++.+++.++-..++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 45888999854321111 2233332211 1355788888642 1222233346889999999999999988
Q ss_pred hhcCCCCccchhhHHHHHHHHHHhcCC
Q 039167 352 LAFVGKSMEERENLEKIGREITRKCKG 378 (923)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~~~i~~~c~G 378 (923)
++-..+. ..+ .++..-|++.+.|
T Consensus 283 k~~~~~~-~l~---~evl~~la~~~~~ 305 (445)
T PRK12422 283 KAEALSI-RIE---ETALDFLIEALSS 305 (445)
T ss_pred HHHHcCC-CCC---HHHHHHHHHhcCC
Confidence 7643221 111 2345556665554
No 150
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.63 E-value=0.0026 Score=73.49 Aligned_cols=192 Identities=14% Similarity=0.100 Sum_probs=106.7
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAII 256 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 256 (923)
.+++|.+...+.+.+++... .-.+.+.++|+.|+||||+|+.+.+...-...- ...+.+.-..-+.|.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~-------~~~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQG-----KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPP-------DGEPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC-------CCCCCCccHHHHHHh
Confidence 36899999999999998643 245677889999999999998886521100000 000111111111111
Q ss_pred HHHhCC-----CCCCcCHHHHHHHHHH----HhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEe-cchHHH
Q 039167 257 EALTGC-----LPNFVEFQSLMQHIQK----HVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITT-RKEAVA 326 (923)
Q Consensus 257 ~~l~~~-----~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~v~ 326 (923)
...... .......++....+.+ -..+++-++|+|++.......+..+...+........+|++| ....+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 000000 0000112222221111 124566788999997666667777777776554455555544 444333
Q ss_pred HH-hcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHH
Q 039167 327 RI-MGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATK 384 (923)
Q Consensus 327 ~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 384 (923)
.. ......++..+++.++....+...+-..+-... .+....|++.++|.+..+.
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~----~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE----DEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 22 234568899999999988888775532221111 2346778888888765443
No 151
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.63 E-value=0.0019 Score=69.29 Aligned_cols=97 Identities=12% Similarity=0.119 Sum_probs=68.1
Q ss_pred CCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecch-HHH-HHhcccceEeCCCCChHHHHHHHHHhhcCCCCc
Q 039167 282 GKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRKE-AVA-RIMGSTNIISVNVLSGMECWLVFESLAFVGKSM 359 (923)
Q Consensus 282 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 359 (923)
+++-++|+|++...+......+...+.....++.+|+||.+. .+. +.......+.+.+++.+++.+.+..... ..
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~-~~-- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALP-ES-- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcc-cC--
Confidence 344455779998888788888888887766677777777764 333 2234567899999999999988876531 11
Q ss_pred cchhhHHHHHHHHHHhcCCChHHHHHH
Q 039167 360 EERENLEKIGREITRKCKGLPLATKTI 386 (923)
Q Consensus 360 ~~~~~~~~~~~~i~~~c~GlPLai~~~ 386 (923)
. .+.+..++..++|.|..+..+
T Consensus 182 -~----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 -D----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -C----hHHHHHHHHHcCCCHHHHHHH
Confidence 1 122456788999999766544
No 152
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.61 E-value=1.3e-05 Score=90.15 Aligned_cols=82 Identities=28% Similarity=0.443 Sum_probs=47.0
Q ss_pred hhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchhhhCCCCCcEEecCCCccccccCcccc
Q 039167 552 FDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPETLCELYNLEHLNVNCCVKLRELPQGIG 631 (923)
Q Consensus 552 ~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~ 631 (923)
+..++.|..|++..|. +..+...+..+.+|++|+|++|. |+.+.. +..+..|+.|++.+|. +..++ .+.
T Consensus 91 l~~~~~l~~l~l~~n~-------i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~~L~l~~N~-i~~~~-~~~ 159 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNK-------IEKIENLLSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLKELNLSGNL-ISDIS-GLE 159 (414)
T ss_pred cccccceeeeeccccc-------hhhcccchhhhhcchheeccccc-cccccc-hhhccchhhheeccCc-chhcc-CCc
Confidence 4455666666666444 44444335556666666666665 555544 5556666666666665 55443 344
Q ss_pred CCCCCCEEeCCCC
Q 039167 632 RLRKLMYLDNECT 644 (923)
Q Consensus 632 ~L~~L~~L~l~~~ 644 (923)
.+++|+.+++++|
T Consensus 160 ~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 160 SLKSLKLLDLSYN 172 (414)
T ss_pred cchhhhcccCCcc
Confidence 4666666666665
No 153
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.60 E-value=0.0069 Score=65.64 Aligned_cols=162 Identities=15% Similarity=0.136 Sum_probs=93.7
Q ss_pred CCceecchhhHH-HHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHH
Q 039167 176 ESEIFGRKDEKN-ELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARA 254 (923)
Q Consensus 176 ~~~~vGr~~~~~-~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 254 (923)
+.-++|-..... .+...+...+ +.....+.|+|..|.|||.|++++.+ ...........+.++ .+.....
T Consensus 87 dnFv~g~~N~~A~aa~~~va~~~---g~~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~----se~f~~~ 157 (408)
T COG0593 87 DNFVVGPSNRLAYAAAKAVAENP---GGAYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLT----SEDFTND 157 (408)
T ss_pred hheeeCCchHHHHHHHHHHHhcc---CCcCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEecc----HHHHHHH
Confidence 344566544333 2333333222 12567899999999999999999999 455555433334333 2333344
Q ss_pred HHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCCh-hhH-HHhHHhhhcC-CCCcEEEEEecch--------
Q 039167 255 IIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENF-HKW-EQFNNCLKNC-LYGSKILITTRKE-------- 323 (923)
Q Consensus 255 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-~~~-~~l~~~l~~~-~~gs~iivTtR~~-------- 323 (923)
.+..+.. .....+++.. .-=++++||++.-.. +.| +.+-..+..- ..|-.||+|++..
T Consensus 158 ~v~a~~~---------~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~ 226 (408)
T COG0593 158 FVKALRD---------NEMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLE 226 (408)
T ss_pred HHHHHHh---------hhHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhcccc
Confidence 4443322 1233344444 344899999965211 122 2233333221 2344899999752
Q ss_pred -HHHHHhcccceEeCCCCChHHHHHHHHHhhcCCC
Q 039167 324 -AVARIMGSTNIISVNVLSGMECWLVFESLAFVGK 357 (923)
Q Consensus 324 -~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~ 357 (923)
++...+...-++++.+.+.+.....+.+++-...
T Consensus 227 ~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~ 261 (408)
T COG0593 227 DRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRG 261 (408)
T ss_pred HHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcC
Confidence 3444555567999999999999999988664433
No 154
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.59 E-value=8.6e-06 Score=91.54 Aligned_cols=106 Identities=25% Similarity=0.309 Sum_probs=79.2
Q ss_pred cCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchhhhCCCCCcEEecCCCccccccCccccCC
Q 039167 554 KLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPETLCELYNLEHLNVNCCVKLRELPQGIGRL 633 (923)
Q Consensus 554 ~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 633 (923)
.+..+..+.+..|. +...-..++.+.+|.+|++.+|. +..+...+..+++|++|++++|. +..+. ++..+
T Consensus 70 ~l~~l~~l~l~~n~-------i~~~~~~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~-I~~i~-~l~~l 139 (414)
T KOG0531|consen 70 SLTSLKELNLRQNL-------IAKILNHLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNK-ITKLE-GLSTL 139 (414)
T ss_pred HhHhHHhhccchhh-------hhhhhcccccccceeeeeccccc-hhhcccchhhhhcchheeccccc-ccccc-chhhc
Confidence 45555666666443 55544557889999999999998 88887768899999999999987 77774 57888
Q ss_pred CCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEeccc
Q 039167 634 RKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVGGG 671 (923)
Q Consensus 634 ~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~ 671 (923)
+.|+.|++.+| .+..+ .++..+++|+.+++..+...
T Consensus 140 ~~L~~L~l~~N-~i~~~-~~~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 140 TLLKELNLSGN-LISDI-SGLESLKSLKLLDLSYNRIV 175 (414)
T ss_pred cchhhheeccC-cchhc-cCCccchhhhcccCCcchhh
Confidence 88999999998 44444 34555777777777665543
No 155
>PRK10536 hypothetical protein; Provisional
Probab=97.56 E-value=0.0016 Score=65.71 Aligned_cols=132 Identities=17% Similarity=0.223 Sum_probs=76.3
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEE----eCC-----ccc
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVC----VSD-----PFD 247 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~----~s~-----~~~ 247 (923)
..+.++......+..++.. ..+|.++|++|.|||+||.++..+.-..+.|+..+-.. +++ +-+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred ccccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCC
Confidence 3467788888888888853 24899999999999999988776422234454433322 111 011
Q ss_pred HH----HHHHHHHHHHhCCCCCCcCHHHHHHHH-----------HHHhcCCce---EEEecCCCCCChhhHHHhHHhhhc
Q 039167 248 EF----RIARAIIEALTGCLPNFVEFQSLMQHI-----------QKHVAGKKL---LLVLDDVWNENFHKWEQFNNCLKN 309 (923)
Q Consensus 248 ~~----~~~~~i~~~l~~~~~~~~~~~~~~~~l-----------~~~l~~kr~---LlVlDdv~~~~~~~~~~l~~~l~~ 309 (923)
.. -.++-+...+..-.. .+.....+ ..+++|+.+ +||+|+..+.+. .++...+..
T Consensus 127 ~~eK~~p~~~pi~D~L~~~~~----~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~---~~~k~~ltR 199 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVRRLG----ASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA---AQMKMFLTR 199 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHhC----hHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH---HHHHHHHhh
Confidence 11 112222222211000 01111111 125566655 999999977654 556666666
Q ss_pred CCCCcEEEEEecch
Q 039167 310 CLYGSKILITTRKE 323 (923)
Q Consensus 310 ~~~gs~iivTtR~~ 323 (923)
.+.+|++|+|--..
T Consensus 200 ~g~~sk~v~~GD~~ 213 (262)
T PRK10536 200 LGENVTVIVNGDIT 213 (262)
T ss_pred cCCCCEEEEeCChh
Confidence 67899999986543
No 156
>PRK08116 hypothetical protein; Validated
Probab=97.56 E-value=0.00037 Score=72.62 Aligned_cols=103 Identities=23% Similarity=0.237 Sum_probs=60.0
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCc
Q 039167 205 HIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKK 284 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 284 (923)
..+.++|..|+|||.||.++++. ....-..++++++ .+++..+........ ..+ ...+.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~~------~~ll~~i~~~~~~~~--~~~----~~~~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVNF------PQLLNRIKSTYKSSG--KED----ENEIIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEH------HHHHHHHHHHHhccc--ccc----HHHHHHHhcCCC
Confidence 46899999999999999999994 3333334566643 344455544432211 111 112333344333
Q ss_pred eEEEecCCCCCChhhHHH--hHHhhhcC-CCCcEEEEEecc
Q 039167 285 LLLVLDDVWNENFHKWEQ--FNNCLKNC-LYGSKILITTRK 322 (923)
Q Consensus 285 ~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTtR~ 322 (923)
||||||+..+...+|.. +...+... ..|..+||||..
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 89999996544445544 44444322 345679999874
No 157
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.55 E-value=0.0074 Score=59.92 Aligned_cols=179 Identities=19% Similarity=0.217 Sum_probs=106.7
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEe-CCcccHHHHHHHHHHHHhCCCCCCcCHH----HHHHHHH
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCV-SDPFDEFRIARAIIEALTGCLPNFVEFQ----SLMQHIQ 277 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~-s~~~~~~~~~~~i~~~l~~~~~~~~~~~----~~~~~l~ 277 (923)
+.+++.++|.-|.|||.+.+++... ..+ +.++-+.+ ....+...+...|+..+... ...... ...+.+.
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s--~~~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~--p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLAS--LNE--DQVAVVVIDKPTLSDATLLEAIVADLESQ--PKVNVNAVLEQIDRELA 123 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHh--cCC--CceEEEEecCcchhHHHHHHHHHHHhccC--ccchhHHHHHHHHHHHH
Confidence 5679999999999999999954431 111 11222333 34456777888888888762 222233 2233333
Q ss_pred HHh-cCCc-eEEEecCCCCCChhhHHHhHHhhhcCCCCc---EEEEEecch-------HHHHHh-cccce-EeCCCCChH
Q 039167 278 KHV-AGKK-LLLVLDDVWNENFHKWEQFNNCLKNCLYGS---KILITTRKE-------AVARIM-GSTNI-ISVNVLSGM 343 (923)
Q Consensus 278 ~~l-~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs---~iivTtR~~-------~v~~~~-~~~~~-~~l~~L~~~ 343 (923)
+.. +++| +.+++||......+..+.++-+......++ +|+..-..+ .+.+.. ....+ |++.|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 333 5777 999999997766667777766544322222 233322211 111111 12334 999999999
Q ss_pred HHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHHH
Q 039167 344 ECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTIAS 388 (923)
Q Consensus 344 ~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 388 (923)
+...++..+.-+.... .+---.+....|.....|.|.+|..++.
T Consensus 204 ~t~~yl~~~Le~a~~~-~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 204 ETGLYLRHRLEGAGLP-EPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHhccCCC-cccCChhHHHHHHHHhccchHHHHHHHH
Confidence 8888887765443221 1111234567889999999999987653
No 158
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.55 E-value=0.0001 Score=52.56 Aligned_cols=41 Identities=29% Similarity=0.488 Sum_probs=33.1
Q ss_pred CcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccch
Q 039167 556 TCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPE 604 (923)
Q Consensus 556 ~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~ 604 (923)
++|++|++++|. +..+|..+++|++|++|++++|. ++.+|.
T Consensus 1 ~~L~~L~l~~N~-------i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQ-------ITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEETSSS--------SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEccCCC-------CcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 468999999776 88888889999999999999998 877765
No 159
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.55 E-value=0.00031 Score=64.94 Aligned_cols=96 Identities=23% Similarity=0.112 Sum_probs=52.4
Q ss_pred EEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcC-Cce
Q 039167 207 ISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAG-KKL 285 (923)
Q Consensus 207 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~ 285 (923)
|.|+|++|+||||+|+.+++. ...+ .+.++.+.-.+. ........+...+.+.-.. ++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~--l~~~---~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY--LGFP---FIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH--TTSE---EEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhh--cccc---cccccccccccc---------------cccccccccccccccccccccce
Confidence 578999999999999999994 3222 234433321100 1111122233333333333 389
Q ss_pred EEEecCCCCCChhh-----------HHHhHHhhhcCCC---CcEEEEEecc
Q 039167 286 LLVLDDVWNENFHK-----------WEQFNNCLKNCLY---GSKILITTRK 322 (923)
Q Consensus 286 LlVlDdv~~~~~~~-----------~~~l~~~l~~~~~---gs~iivTtR~ 322 (923)
+|++||+..-.... ...+...+..... +..||.||..
T Consensus 61 vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 61 VLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp EEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred eeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 99999995433222 3445555544332 3466667765
No 160
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.53 E-value=0.00081 Score=81.94 Aligned_cols=153 Identities=18% Similarity=0.153 Sum_probs=85.3
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcc---ccccc-ceEEEEEeCCcccHHHHHH
Q 039167 178 EIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGD---VEKNF-EKRIWVCVSDPFDEFRIAR 253 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~F-~~~~wv~~s~~~~~~~~~~ 253 (923)
.++||+++++++++.|... ...-+.++|++|+|||++|+.++.... +.... +..+|. + +...++
T Consensus 180 ~~igr~~ei~~~~~~L~r~------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~- 247 (821)
T CHL00095 180 PVIGREKEIERVIQILGRR------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL- 247 (821)
T ss_pred CCCCcHHHHHHHHHHHccc------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh-
Confidence 5899999999999999654 223456999999999999998877421 11111 234442 1 221111
Q ss_pred HHHHHHhCCCCCCcCHHHHHHHHHH-HhcCCceEEEecCCCCC--------ChhhHHHhHHhhhcCCCCcEEEEEecchH
Q 039167 254 AIIEALTGCLPNFVEFQSLMQHIQK-HVAGKKLLLVLDDVWNE--------NFHKWEQFNNCLKNCLYGSKILITTRKEA 324 (923)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 324 (923)
.+. ....+.++....+.+ .-..++.+|++|++..- +.+.-..+...+..+ .-++|.+|....
T Consensus 248 ------ag~-~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg--~l~~IgaTt~~e 318 (821)
T CHL00095 248 ------AGT-KYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG--ELQCIGATTLDE 318 (821)
T ss_pred ------ccC-CCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC--CcEEEEeCCHHH
Confidence 111 111222333333322 23456899999999411 111122333333322 245666666544
Q ss_pred HHHH-------hcccceEeCCCCChHHHHHHHHH
Q 039167 325 VARI-------MGSTNIISVNVLSGMECWLVFES 351 (923)
Q Consensus 325 v~~~-------~~~~~~~~l~~L~~~~~~~lf~~ 351 (923)
.... .....++.+...+.++...++..
T Consensus 319 y~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 319 YRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 3221 12345788899999988888764
No 161
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.52 E-value=1.4e-05 Score=78.53 Aligned_cols=260 Identities=17% Similarity=0.117 Sum_probs=143.9
Q ss_pred hhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCC---Cccccch-------hhhCCCCCcEEecCCCc
Q 039167 552 FDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQM---EIERLPE-------TLCELYNLEHLNVNCCV 621 (923)
Q Consensus 552 ~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~---~l~~lp~-------~i~~L~~L~~L~L~~~~ 621 (923)
+..+..+..++||+|... ......+...|.+-.+|+..++++-. ...++|+ .+-+|+.|++.+|+.|-
T Consensus 26 l~~~d~~~evdLSGNtig--tEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 26 LEMMDELVEVDLSGNTIG--TEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHhhcceeEEeccCCccc--HHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 445778888999987621 11123455556667788888887643 0123443 34577888888888876
Q ss_pred cccccCcc----ccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEecccCCcccccc-cccCCCCCCCceEeCCC
Q 039167 622 KLRELPQG----IGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVGGGYGRACSLG-SLKKLNLLRDCRIRGLG 696 (923)
Q Consensus 622 ~l~~lp~~----i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~-~L~~L~~L~~l~i~~~~ 696 (923)
.-...|.. |.+-+.|.||.+++|. +..+ .+..++ .|.+|.
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~-----------------------aG~rigkal~~la----------- 148 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNG-LGPI-----------------------AGGRIGKALFHLA----------- 148 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCC-CCcc-----------------------chhHHHHHHHHHH-----------
Confidence 54555543 4556777888877772 2211 111111 111111
Q ss_pred CCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCcccc--------
Q 039167 697 DVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKNWI-------- 768 (923)
Q Consensus 697 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~-------- 768 (923)
........+.|++.....|.+.++ +....-..+..+.+|+.+.+..|.+. |..+
T Consensus 149 --------~nKKaa~kp~Le~vicgrNRleng-----s~~~~a~~l~sh~~lk~vki~qNgIr-----pegv~~L~~~gl 210 (388)
T COG5238 149 --------YNKKAADKPKLEVVICGRNRLENG-----SKELSAALLESHENLKEVKIQQNGIR-----PEGVTMLAFLGL 210 (388)
T ss_pred --------HHhhhccCCCceEEEeccchhccC-----cHHHHHHHHHhhcCceeEEeeecCcC-----cchhHHHHHHHH
Confidence 112234566777777776665432 12233344556678888888877644 4322
Q ss_pred cccccccEEeEeCCCCCCCCC-----CCCCCCCccceeccCCcCceEeCccccCCCCCCCCcccccCcccceeecccccc
Q 039167 769 MSLTNLRFLGLHEWRNCEHLP-----PLGKLPSLESLYIAGMKSVKRVGNEFLGVESDMDGSSVIAFAKLKKLTFYIMEE 843 (923)
Q Consensus 769 ~~l~~L~~L~L~~~~~~~~l~-----~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~ 843 (923)
.++++|+.|+|.+|..+..-. .+...+.|+.|.+.+|- +..-|..-+ +...+...+|+|..|...+...
T Consensus 211 ~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl-ls~~G~~~v-----~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 211 FYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL-LSNEGVKSV-----LRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred HHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh-hccccHHHH-----HHHhhhhcCCCccccccchhhh
Confidence 267889999998885443211 14556778999998886 322221100 0111234678888876664321
Q ss_pred ccccccccccc-cccccCcccceeeecccc
Q 039167 844 LEEWDLGTAIK-GEIIIMPRLSSLTIWSCR 872 (923)
Q Consensus 844 L~~~~~~~~~~-~~~~~lp~L~~L~l~~c~ 872 (923)
-.........+ ....++|-|..|.+.+|.
T Consensus 285 ~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 285 RGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred cCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 11111110011 123478999999998885
No 162
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.51 E-value=0.00079 Score=63.02 Aligned_cols=88 Identities=19% Similarity=0.097 Sum_probs=47.0
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCC-
Q 039167 205 HIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGK- 283 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k- 283 (923)
..+.|+|++|+||||+|+.+... .......++++..+........... ...................+.+..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 47899999999999999999884 3222223455544433222111111 111111111222223333444444444
Q ss_pred ceEEEecCCCCCC
Q 039167 284 KLLLVLDDVWNEN 296 (923)
Q Consensus 284 r~LlVlDdv~~~~ 296 (923)
..+|++|++....
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 4999999997643
No 163
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=4.7e-06 Score=82.80 Aligned_cols=165 Identities=18% Similarity=0.190 Sum_probs=85.1
Q ss_pred cCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCcccccccccccEEeEeCCCCCCCC
Q 039167 709 LEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRNCEHL 788 (923)
Q Consensus 709 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l 788 (923)
++.|+.|+.|+|.++.+. +.+...+....+|+.|+|+++.|....-....+.+++.|..|+|+.|......
T Consensus 206 Ls~C~kLk~lSlEg~~Ld---------D~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~ 276 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLD---------DPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEK 276 (419)
T ss_pred HHHHHhhhhccccccccC---------cHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchh
Confidence 344555555555555432 23444455556677777766665441110222346677777777777543322
Q ss_pred CC--C-CCCCCccceeccCCcCceEeCccccCCCCCCCCcccccCcccceeeccccccccccccccccccccccCcccce
Q 039167 789 PP--L-GKLPSLESLYIAGMKSVKRVGNEFLGVESDMDGSSVIAFAKLKKLTFYIMEELEEWDLGTAIKGEIIIMPRLSS 865 (923)
Q Consensus 789 ~~--l-~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~lp~L~~ 865 (923)
-. . .--++|+.|+|+|+... +...... ......|+|..|++++|-.|+.-.+ ..+..|+.|++
T Consensus 277 Vtv~V~hise~l~~LNlsG~rrn--l~~sh~~-------tL~~rcp~l~~LDLSD~v~l~~~~~-----~~~~kf~~L~~ 342 (419)
T KOG2120|consen 277 VTVAVAHISETLTQLNLSGYRRN--LQKSHLS-------TLVRRCPNLVHLDLSDSVMLKNDCF-----QEFFKFNYLQH 342 (419)
T ss_pred hhHHHhhhchhhhhhhhhhhHhh--hhhhHHH-------HHHHhCCceeeeccccccccCchHH-----HHHHhcchhee
Confidence 11 1 11356777777765411 1100000 0012467777777776655544222 23456778888
Q ss_pred eeecccccCCCCCc---CCCCCCCccEEEeccCCch
Q 039167 866 LTIWSCRKLKALPD---HLLQKSTLQKLEIWGGCHI 898 (923)
Q Consensus 866 L~l~~c~~l~~lp~---~l~~l~sL~~L~l~~~c~~ 898 (923)
|.++.|..+ +|. .+...|+|.+|++...|+.
T Consensus 343 lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 343 LSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred eehhhhcCC--ChHHeeeeccCcceEEEEeccccCc
Confidence 888888643 233 2445677888888333333
No 164
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.42 E-value=0.0018 Score=77.68 Aligned_cols=166 Identities=17% Similarity=0.213 Sum_probs=89.9
Q ss_pred CCceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHH
Q 039167 176 ESEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAI 255 (923)
Q Consensus 176 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 255 (923)
+.+.+|.++.+++|.++|............++.++|++|+||||+|+.+... ....|- -+..+...+...+...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~~---~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKYV---RMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH--hCCCEE---EEEcCCCCCHHHhccch
Confidence 4568999999999998886322111224457999999999999999999872 333332 23333333332221111
Q ss_pred HHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCChhh----HHHhHHhhhcC---------------CCCcEE
Q 039167 256 IEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHK----WEQFNNCLKNC---------------LYGSKI 316 (923)
Q Consensus 256 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~----~~~l~~~l~~~---------------~~gs~i 316 (923)
....+ .......+.+.+ .....-+++||.+....... ...+...+... -...-+
T Consensus 396 ~~~~g------~~~G~~~~~l~~-~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 396 RTYIG------SMPGKLIQKMAK-VGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred hccCC------CCCcHHHHHHHh-cCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 00000 001112222222 12244578999985432211 23444444321 023344
Q ss_pred EEEecchHHHHH-hcccceEeCCCCChHHHHHHHHHhh
Q 039167 317 LITTRKEAVARI-MGSTNIISVNVLSGMECWLVFESLA 353 (923)
Q Consensus 317 ivTtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a 353 (923)
|.|+....+... .+...++++.+++.++-.++.+++.
T Consensus 469 i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 469 VATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 556554433222 2445688999999998888776654
No 165
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.37 E-value=0.0022 Score=76.27 Aligned_cols=154 Identities=18% Similarity=0.167 Sum_probs=85.2
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccc-cc---cceEEEEEeCCcccHHHHHH
Q 039167 178 EIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVE-KN---FEKRIWVCVSDPFDEFRIAR 253 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~---F~~~~wv~~s~~~~~~~~~~ 253 (923)
.++||++++.++++.|... ...-+.++|++|+|||++|+.++...... .. .++.+|.. +...+
T Consensus 187 ~liGR~~ei~~~i~iL~r~------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l-- 253 (758)
T PRK11034 187 PLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL-- 253 (758)
T ss_pred cCcCCCHHHHHHHHHHhcc------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH--
Confidence 5899999999999988753 22334689999999999999988631111 11 13444421 11111
Q ss_pred HHHHHHhCCCCCCcCHHHHHHHHHHHh-cCCceEEEecCCCCC--------ChhhHH-HhHHhhhcCCCCcEEEEEecch
Q 039167 254 AIIEALTGCLPNFVEFQSLMQHIQKHV-AGKKLLLVLDDVWNE--------NFHKWE-QFNNCLKNCLYGSKILITTRKE 323 (923)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~--------~~~~~~-~l~~~l~~~~~gs~iivTtR~~ 323 (923)
+.+. ....+.+.....+.+.+ +.++.+|++|++..- ...+.. .+...+..+ .-+||-+|...
T Consensus 254 -----laG~-~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g--~i~vIgATt~~ 325 (758)
T PRK11034 254 -----LAGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG--KIRVIGSTTYQ 325 (758)
T ss_pred -----hccc-chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC--CeEEEecCChH
Confidence 1110 11112222222333333 356789999999521 111222 233333222 33555555544
Q ss_pred HHHHH-------hcccceEeCCCCChHHHHHHHHHh
Q 039167 324 AVARI-------MGSTNIISVNVLSGMECWLVFESL 352 (923)
Q Consensus 324 ~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~ 352 (923)
+.... ......+.+++.+.++..+++...
T Consensus 326 E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_pred HHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHH
Confidence 33211 123458999999999999998754
No 166
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.36 E-value=0.0049 Score=66.59 Aligned_cols=149 Identities=9% Similarity=0.074 Sum_probs=91.5
Q ss_pred ceec-chhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCccccc--------------------ccce
Q 039167 178 EIFG-RKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEK--------------------NFEK 236 (923)
Q Consensus 178 ~~vG-r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~ 236 (923)
.++| -+..++.+...+... .-.....++|+.|+||||+|+.+.+..--.. |-|.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~ 80 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDV 80 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCE
Confidence 3566 566677777777432 2466789999999999999988855311000 1111
Q ss_pred EEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHH----hcCCceEEEecCCCCCChhhHHHhHHhhhcCCC
Q 039167 237 RIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKH----VAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLY 312 (923)
Q Consensus 237 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 312 (923)
......+. ....++....+... ..+.+=++|+|++...+......+...+.....
T Consensus 81 ~~i~~~~~---------------------~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~ 139 (329)
T PRK08058 81 HLVAPDGQ---------------------SIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSG 139 (329)
T ss_pred EEeccccc---------------------cCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCC
Confidence 11100011 11223333222211 234566799999977776777788888877667
Q ss_pred CcEEEEEecch-HHHH-HhcccceEeCCCCChHHHHHHHHHh
Q 039167 313 GSKILITTRKE-AVAR-IMGSTNIISVNVLSGMECWLVFESL 352 (923)
Q Consensus 313 gs~iivTtR~~-~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~ 352 (923)
++.+|++|.+. .+.. .......+++.+++.++..+.+...
T Consensus 140 ~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 140 GTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred CceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 77777777653 3332 2244679999999999998888653
No 167
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.36 E-value=0.003 Score=69.85 Aligned_cols=119 Identities=20% Similarity=0.196 Sum_probs=75.8
Q ss_pred EEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCce
Q 039167 206 IISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKL 285 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 285 (923)
++.|.|+-++||||+++.+... .... .+++..-+......-+.+.. ..+.+.-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d~~-----------------~~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLDLL-----------------RAYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHHHH-----------------HHHHHhhccCCc
Confidence 9999999999999999777663 2121 44554332211111111111 111111122788
Q ss_pred EEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecchHHHH-----H-hcccceEeCCCCChHHHHHHH
Q 039167 286 LLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRKEAVAR-----I-MGSTNIISVNVLSGMECWLVF 349 (923)
Q Consensus 286 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~-----~-~~~~~~~~l~~L~~~~~~~lf 349 (923)
.|+||.|... ..|+.....+.+.++. +|++|+-+..... . .|....+++-||+..|...+-
T Consensus 97 yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 97 YIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred eEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 9999999654 7899988888777655 8888888754332 2 245678999999999987653
No 168
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.31 E-value=0.0065 Score=73.67 Aligned_cols=165 Identities=18% Similarity=0.193 Sum_probs=84.0
Q ss_pred CCceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHH
Q 039167 176 ESEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAI 255 (923)
Q Consensus 176 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 255 (923)
+.+++|.+...++|.+++............++.++|++|+|||++|+.+.+. ....|- -+.++...+..++...
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~--l~~~~~---~i~~~~~~~~~~i~g~- 392 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA--LNRKFV---RFSLGGVRDEAEIRGH- 392 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH--hcCCeE---EEeCCCcccHHHHcCC-
Confidence 3458899999999888764221101123357999999999999999999983 333332 1222322222221100
Q ss_pred HHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCChh----hHHHhHHhhhc--------C-------CCCcEE
Q 039167 256 IEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFH----KWEQFNNCLKN--------C-------LYGSKI 316 (923)
Q Consensus 256 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~----~~~~l~~~l~~--------~-------~~gs~i 316 (923)
....-......+.+.+.+. ..++-+|+||++...... ....+...+.. . -.+..+
T Consensus 393 -----~~~~~g~~~g~i~~~l~~~-~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~ 466 (775)
T TIGR00763 393 -----RRTYVGAMPGRIIQGLKKA-KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIF 466 (775)
T ss_pred -----CCceeCCCCchHHHHHHHh-CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEE
Confidence 0000001112222333332 234458899998443211 11223332221 0 012334
Q ss_pred EEEecchH-HHHH-hcccceEeCCCCChHHHHHHHHHh
Q 039167 317 LITTRKEA-VARI-MGSTNIISVNVLSGMECWLVFESL 352 (923)
Q Consensus 317 ivTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~ 352 (923)
|.||...+ +... .....++++.+++.++-.+++...
T Consensus 467 I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~ 504 (775)
T TIGR00763 467 IATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKY 504 (775)
T ss_pred EEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHH
Confidence 44554422 1111 233468899999988887777654
No 169
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.31 E-value=0.0043 Score=59.35 Aligned_cols=137 Identities=17% Similarity=0.181 Sum_probs=78.0
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccc------------------cccceEEEEEe
Q 039167 181 GRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVE------------------KNFEKRIWVCV 242 (923)
Q Consensus 181 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------------------~~F~~~~wv~~ 242 (923)
|-++..+.+.+.+... .-...+.++|+.|+||+|+|..+.+..--. .......|+.-
T Consensus 1 gq~~~~~~L~~~~~~~-----~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcC-----CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 4456677777777532 245678999999999999998776531100 11222333322
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHh-----cCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEE
Q 039167 243 SDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHV-----AGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKIL 317 (923)
Q Consensus 243 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 317 (923)
.... .....++.. .+.+.+ .+++=++|+||+...+.+.+..+...+.....++++|
T Consensus 76 ~~~~------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 76 DKKK------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp TTSS------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred cccc------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 2210 011223322 222222 3456689999998888888999999998888889999
Q ss_pred EEecchH-HH-HHhcccceEeCCCCC
Q 039167 318 ITTRKEA-VA-RIMGSTNIISVNVLS 341 (923)
Q Consensus 318 vTtR~~~-v~-~~~~~~~~~~l~~L~ 341 (923)
++|++.+ +. ........+.+.+++
T Consensus 137 L~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 137 LITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEECChHHChHHHHhhceEEecCCCC
Confidence 8888754 32 223445667776654
No 170
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.31 E-value=0.0018 Score=71.72 Aligned_cols=156 Identities=17% Similarity=0.162 Sum_probs=86.1
Q ss_pred ceecchhhHHHHHHHHhcCCC-------CCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHH
Q 039167 178 EIFGRKDEKNELVDRLICENS-------IEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFR 250 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 250 (923)
++.|.+..++++.+.+...-. .+-...+-+.++|++|+|||++|+++++. ....| +.+..+.
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f---i~V~~se------ 252 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF---LRVVGSE------ 252 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE---EEEecch------
Confidence 578889888888776632100 01124456889999999999999999983 44443 1121111
Q ss_pred HHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCC--------C---hhhHHHhHHhhh---c--CCCCc
Q 039167 251 IARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE--------N---FHKWEQFNNCLK---N--CLYGS 314 (923)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--------~---~~~~~~l~~~l~---~--~~~gs 314 (923)
+.. ...+ .....+...+.....+.+.+|+||++... + ......+...+. . ...+.
T Consensus 253 L~~----k~~G-----e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V 323 (438)
T PTZ00361 253 LIQ----KYLG-----DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDV 323 (438)
T ss_pred hhh----hhcc-----hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCe
Confidence 111 0000 01111222222233456789999987321 0 000111222221 1 12356
Q ss_pred EEEEEecchHHHHH-h---c-ccceEeCCCCChHHHHHHHHHhh
Q 039167 315 KILITTRKEAVARI-M---G-STNIISVNVLSGMECWLVFESLA 353 (923)
Q Consensus 315 ~iivTtR~~~v~~~-~---~-~~~~~~l~~L~~~~~~~lf~~~a 353 (923)
+||.||...+.... + + -...+++...+.++..++|..+.
T Consensus 324 ~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~ 367 (438)
T PTZ00361 324 KVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHT 367 (438)
T ss_pred EEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHH
Confidence 78888876543332 1 1 24578999999999999998765
No 171
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.29 E-value=0.0043 Score=69.88 Aligned_cols=165 Identities=15% Similarity=0.198 Sum_probs=87.5
Q ss_pred CceecchhhHHHHHHHHhcCCC-------CCCCCCEEEEEEecCCChHHHHHHHHhcCcccccc-----cceEEEEEeCC
Q 039167 177 SEIFGRKDEKNELVDRLICENS-------IEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKN-----FEKRIWVCVSD 244 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~~s~ 244 (923)
.++.|.+..++++.+.+..+-. ..-...+-+.++|++|.|||++|+++++. .... +....|+.+..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEeccc
Confidence 3578899999888887532100 01123456899999999999999999984 3222 12344554432
Q ss_pred cccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHH-hcCCceEEEecCCCCCC-------hhhH-----HHhHHhhhcCC
Q 039167 245 PFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKH-VAGKKLLLVLDDVWNEN-------FHKW-----EQFNNCLKNCL 311 (923)
Q Consensus 245 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~-------~~~~-----~~l~~~l~~~~ 311 (923)
. +++.. ..+. .......+....++. -.+++++|+||++...- ..+. .++...+....
T Consensus 260 ~----eLl~k----yvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~ 329 (512)
T TIGR03689 260 P----ELLNK----YVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVE 329 (512)
T ss_pred h----hhccc----ccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccc
Confidence 1 11000 0000 000011111111111 23578999999995310 0111 22333332211
Q ss_pred --CCcEEEEEecchHHHH-Hh---cc-cceEeCCCCChHHHHHHHHHhh
Q 039167 312 --YGSKILITTRKEAVAR-IM---GS-TNIISVNVLSGMECWLVFESLA 353 (923)
Q Consensus 312 --~gs~iivTtR~~~v~~-~~---~~-~~~~~l~~L~~~~~~~lf~~~a 353 (923)
.+..||.||...+... .+ +. +..++++..+.++..++|..+.
T Consensus 330 ~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 330 SLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 2445566665543221 11 12 4568999999999999998875
No 172
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.29 E-value=0.016 Score=61.59 Aligned_cols=166 Identities=12% Similarity=0.060 Sum_probs=102.8
Q ss_pred hhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCc---ccc----------------cccceEEEEEeCC
Q 039167 184 DEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNG---DVE----------------KNFEKRIWVCVSD 244 (923)
Q Consensus 184 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~~~----------------~~F~~~~wv~~s~ 244 (923)
...+++...+.. +.-...+-++|+.|+||+++|+.+.... ... .|-| ..|+.-..
T Consensus 10 ~~~~~l~~~~~~-----~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~ 83 (319)
T PRK06090 10 PVWQNWKAGLDA-----GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD-LHVIKPEK 83 (319)
T ss_pred HHHHHHHHHHHc-----CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecCc
Confidence 345566666542 2346789999999999999998875421 000 0111 11111000
Q ss_pred cccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHh-----cCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEE
Q 039167 245 PFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHV-----AGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILIT 319 (923)
Q Consensus 245 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT 319 (923)
......+++... +.+.+ .+++=++|+|++...+......+...+.....++.+|++
T Consensus 84 ------------------~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~ 144 (319)
T PRK06090 84 ------------------EGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLV 144 (319)
T ss_pred ------------------CCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEE
Confidence 001122333322 22332 345568899999877778888888888777777777777
Q ss_pred ecch-HHH-HHhcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHH
Q 039167 320 TRKE-AVA-RIMGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTI 386 (923)
Q Consensus 320 tR~~-~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 386 (923)
|.+. .+. +.......+.+.+++.+++.+.+.... .+ .+..+++.++|.|+.+..+
T Consensus 145 t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~---~~---------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 145 THNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG---IT---------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred ECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC---Cc---------hHHHHHHHcCCCHHHHHHH
Confidence 6654 333 334557899999999999998886531 11 1346788999999977554
No 173
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.28 E-value=0.0031 Score=77.20 Aligned_cols=151 Identities=16% Similarity=0.205 Sum_probs=82.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccc------cceEEEEEeCCcccHHHH
Q 039167 178 EIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKN------FEKRIWVCVSDPFDEFRI 251 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~wv~~s~~~~~~~~ 251 (923)
.++||+.++.+++..|... ...-+.++|++|+|||++|+.+... +... ....+|.. ++..+
T Consensus 174 ~~igr~~ei~~~~~~l~r~------~~~n~lL~G~pGvGKT~l~~~la~~--i~~~~~p~~l~~~~~~~l-----~~~~l 240 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRR------TKNNPVLIGEPGVGKTAIVEGLAQR--IVNGDVPESLKNKRLLAL-----DMGAL 240 (852)
T ss_pred cCCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHH--HhccCCchhhcCCeEEEe-----eHHHH
Confidence 5999999999999999653 2234558999999999999988774 2111 12333321 11111
Q ss_pred HHHHHHHHhCCCCCCcCHHHHHHHHHHHh-c-CCceEEEecCCCCCC--------hhhHHHhHHhhhcCCCC-cEEEEEe
Q 039167 252 ARAIIEALTGCLPNFVEFQSLMQHIQKHV-A-GKKLLLVLDDVWNEN--------FHKWEQFNNCLKNCLYG-SKILITT 320 (923)
Q Consensus 252 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~-~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~g-s~iivTt 320 (923)
. .+. ....+.+.....+.+.+ + +++.+|++|++..-. .+.-+.++..+ ..| -++|-+|
T Consensus 241 ~-------a~~-~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l---~~g~i~~IgaT 309 (852)
T TIGR03346 241 I-------AGA-KYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL---ARGELHCIGAT 309 (852)
T ss_pred h-------hcc-hhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh---hcCceEEEEeC
Confidence 1 000 00112222222232233 2 468999999995321 01112222222 223 3455555
Q ss_pred cchHHHHH-------hcccceEeCCCCChHHHHHHHHHh
Q 039167 321 RKEAVARI-------MGSTNIISVNVLSGMECWLVFESL 352 (923)
Q Consensus 321 R~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~ 352 (923)
........ ......+.++..+.++...++...
T Consensus 310 t~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 310 TLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred cHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 54433211 123457889999999999988754
No 174
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.28 E-value=0.0018 Score=74.91 Aligned_cols=51 Identities=22% Similarity=0.270 Sum_probs=40.2
Q ss_pred CCceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcC
Q 039167 176 ESEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 176 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
-.+++|.+..++++..++..... .....+++.|+|++|+||||+++.+...
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45699999999999998865322 1223468999999999999999999874
No 175
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.27 E-value=1.9e-05 Score=69.53 Aligned_cols=83 Identities=31% Similarity=0.356 Sum_probs=44.9
Q ss_pred hcCCcccEEeccccCCccccccccccccccc-CCCCCcEEeccCCCCccccchhhhCCCCCcEEecCCCccccccCcccc
Q 039167 553 DKLTCLRALKLEVHNERLPEDFIKEVPTNIE-KLLHLKYLNLANQMEIERLPETLCELYNLEHLNVNCCVKLRELPQGIG 631 (923)
Q Consensus 553 ~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~-~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~ 631 (923)
....+|...+|++|. ++.+|+.+. +++-+..|++++|. +..+|..+..++.|+.|+++.|. +...|.-|.
T Consensus 50 ~~~~el~~i~ls~N~-------fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~ 120 (177)
T KOG4579|consen 50 SKGYELTKISLSDNG-------FKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNP-LNAEPRVIA 120 (177)
T ss_pred hCCceEEEEecccch-------hhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCc-cccchHHHH
Confidence 344455555555443 555555443 23355555665555 55566555555566666665555 555555555
Q ss_pred CCCCCCEEeCCCC
Q 039167 632 RLRKLMYLDNECT 644 (923)
Q Consensus 632 ~L~~L~~L~l~~~ 644 (923)
.|.+|-.|+..++
T Consensus 121 ~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 121 PLIKLDMLDSPEN 133 (177)
T ss_pred HHHhHHHhcCCCC
Confidence 5555555555444
No 176
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.27 E-value=0.00026 Score=76.29 Aligned_cols=86 Identities=26% Similarity=0.414 Sum_probs=59.9
Q ss_pred ccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchhh
Q 039167 527 IEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPETL 606 (923)
Q Consensus 527 ~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i 606 (923)
+..+.+++.|++++|.+.. +|. + ...|+.|.+++|. .+..+|..+. .+|++|++++|..+..+|++
T Consensus 48 ~~~~~~l~~L~Is~c~L~s--LP~-L--P~sLtsL~Lsnc~------nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s- 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES--LPV-L--PNELTEITIENCN------NLTTLPGSIP--EGLEKLTVCHCPEISGLPES- 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc--cCC-C--CCCCcEEEccCCC------CcccCCchhh--hhhhheEccCcccccccccc-
Confidence 4567889999999987554 232 1 2369999998765 4666776553 58999999999668888864
Q ss_pred hCCCCCcEEecCCC--ccccccCcccc
Q 039167 607 CELYNLEHLNVNCC--VKLRELPQGIG 631 (923)
Q Consensus 607 ~~L~~L~~L~L~~~--~~l~~lp~~i~ 631 (923)
|+.|++.++ ..+..+|.++.
T Consensus 114 -----Le~L~L~~n~~~~L~~LPssLk 135 (426)
T PRK15386 114 -----VRSLEIKGSATDSIKNVPNGLT 135 (426)
T ss_pred -----cceEEeCCCCCcccccCcchHh
Confidence 566666543 33566776544
No 177
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.27 E-value=0.011 Score=62.95 Aligned_cols=96 Identities=10% Similarity=0.100 Sum_probs=67.9
Q ss_pred CCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecc-hHHH-HHhcccceEeCCCCChHHHHHHHHHhhcCCCCc
Q 039167 282 GKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRK-EAVA-RIMGSTNIISVNVLSGMECWLVFESLAFVGKSM 359 (923)
Q Consensus 282 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 359 (923)
+++-++|+|++...+...-..+...+.....++.+|++|.+ ..+. +.......+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~---~-- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG---V-- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC---C--
Confidence 56679999999777767777788888776667777777765 3333 223456789999999999988886531 1
Q ss_pred cchhhHHHHHHHHHHhcCCChHHHHHHH
Q 039167 360 EERENLEKIGREITRKCKGLPLATKTIA 387 (923)
Q Consensus 360 ~~~~~~~~~~~~i~~~c~GlPLai~~~~ 387 (923)
.. ..+..++..++|.|+.+..+.
T Consensus 187 -~~----~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 -SE----RAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred -Ch----HHHHHHHHHcCCCHHHHHHHh
Confidence 11 125677999999998765443
No 178
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.27 E-value=0.00015 Score=85.16 Aligned_cols=135 Identities=19% Similarity=0.063 Sum_probs=63.7
Q ss_pred CCCcEEeccCCCCccc-cchhhh-CCCCCcEEecCCCccc-cccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCc
Q 039167 586 LHLKYLNLANQMEIER-LPETLC-ELYNLEHLNVNCCVKL-RELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRR 662 (923)
Q Consensus 586 ~~L~~L~L~~~~~l~~-lp~~i~-~L~~L~~L~L~~~~~l-~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~ 662 (923)
.+|++|++++...+.. =|..+| .||.|++|.+++-... ..+-.-..++++|..||++++ .+..+ .+|+.|++||+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHH
Confidence 3455555555432221 122232 4556666666553211 112222345566666666666 33333 55666666666
Q ss_pred CCceEecccCCcccccccccCCCCCCCceEeCCCCCCCh--hhhHHhhcCCCCCCCcEEEEEcC
Q 039167 663 VKEFVVGGGYGRACSLGSLKKLNLLRDCRIRGLGDVSDV--DEARRAELEKKKNLFELKLHFDQ 724 (923)
Q Consensus 663 L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~--~~~~~~~l~~~~~L~~L~l~~~~ 724 (923)
|.+.+..... ...+.+|=.|++|+.|.++.-...... .......-..+++|+.|+.+++.
T Consensus 200 L~mrnLe~e~--~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 200 LSMRNLEFES--YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HhccCCCCCc--hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 6555444332 233445555555665555543322211 12222233346677777777654
No 179
>PRK12377 putative replication protein; Provisional
Probab=97.22 E-value=0.00095 Score=68.16 Aligned_cols=102 Identities=21% Similarity=0.113 Sum_probs=57.5
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGK 283 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 283 (923)
...+.++|..|+|||+||.++.+. .......++++++. +++..+-..... ..... .+.+.+ .+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~------~l~~~l~~~~~~----~~~~~----~~l~~l-~~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP------DVMSRLHESYDN----GQSGE----KFLQEL-CK 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH------HHHHHHHHHHhc----cchHH----HHHHHh-cC
Confidence 457899999999999999999984 43333445666543 344444333211 11111 122222 45
Q ss_pred ceEEEecCCCCCChhhHH--HhHHhhhcC-CCCcEEEEEecc
Q 039167 284 KLLLVLDDVWNENFHKWE--QFNNCLKNC-LYGSKILITTRK 322 (923)
Q Consensus 284 r~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTtR~ 322 (923)
--||||||+.......|. .+...+... .+.--+||||..
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 679999999554334454 344444332 222347788764
No 180
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.18 E-value=0.0047 Score=75.32 Aligned_cols=138 Identities=14% Similarity=0.243 Sum_probs=78.0
Q ss_pred CceecchhhHHHHHHHHhcCCC---CCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENS---IEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIAR 253 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 253 (923)
..++|.+..++.+...+..... ..+....++.++|+.|+|||++|+.+++. ....-...+.+.++.-.. .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~-----~ 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFME-----K 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhh-----h
Confidence 4689999999998888754211 01123357889999999999999999873 211112334444433211 1
Q ss_pred HHHHHHhCCCCCCcCHHHHHHHHHHHhcCC-ceEEEecCCCCCChhhHHHhHHhhhcCC-----------CCcEEEEEec
Q 039167 254 AIIEALTGCLPNFVEFQSLMQHIQKHVAGK-KLLLVLDDVWNENFHKWEQFNNCLKNCL-----------YGSKILITTR 321 (923)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR 321 (923)
.....+.+..+.....+. ...+.+.++.+ .-+|+|||+...+...+..+...+..+. ..+-||+||.
T Consensus 641 ~~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN 719 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSN 719 (857)
T ss_pred hhHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCC
Confidence 112223222222222111 11233333323 3699999997767777888877775431 1233777877
Q ss_pred c
Q 039167 322 K 322 (923)
Q Consensus 322 ~ 322 (923)
.
T Consensus 720 ~ 720 (857)
T PRK10865 720 L 720 (857)
T ss_pred c
Confidence 5
No 181
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.17 E-value=0.008 Score=58.25 Aligned_cols=44 Identities=23% Similarity=0.165 Sum_probs=35.7
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhc
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.++||-++.++++.-.-.+ .+..-+.|.||+|+||||-+..+++
T Consensus 27 ~dIVGNe~tv~rl~via~~------gnmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE------GNMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc------CCCCceEeeCCCCCchhhHHHHHHH
Confidence 4689999999988766533 3677789999999999998877766
No 182
>PRK08181 transposase; Validated
Probab=97.17 E-value=0.0012 Score=68.21 Aligned_cols=101 Identities=22% Similarity=0.159 Sum_probs=55.6
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCc
Q 039167 205 HIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKK 284 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 284 (923)
.-+.++|++|+|||.||..+.+. .......++|+.+ .++...+..... ....+.. +. .+ .+-
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~------~~L~~~l~~a~~-----~~~~~~~---l~-~l-~~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRT------TDLVQKLQVARR-----ELQLESA---IA-KL-DKF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeH------HHHHHHHHHHHh-----CCcHHHH---HH-HH-hcC
Confidence 35899999999999999999873 3333334556543 344444433211 1112221 22 22 234
Q ss_pred eEEEecCCCCCChhhHH--HhHHhhhcCCCCcEEEEEecch
Q 039167 285 LLLVLDDVWNENFHKWE--QFNNCLKNCLYGSKILITTRKE 323 (923)
Q Consensus 285 ~LlVlDdv~~~~~~~~~--~l~~~l~~~~~gs~iivTtR~~ 323 (923)
-||||||+.......|. .+...+...-.+..+||||...
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 59999999654333332 3444443321123588888753
No 183
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.16 E-value=0.019 Score=61.18 Aligned_cols=176 Identities=10% Similarity=0.008 Sum_probs=101.9
Q ss_pred hHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCccccccc---ce-----EEEEEeCCcccHHHHHHHHH
Q 039167 185 EKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNF---EK-----RIWVCVSDPFDEFRIARAII 256 (923)
Q Consensus 185 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~-----~~wv~~s~~~~~~~~~~~i~ 256 (923)
..+.+...+..+ .-.....+.|+.|+||+++|+.+....--.... .| .-++..+..+|...+
T Consensus 10 ~~~~l~~~~~~~-----rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i----- 79 (325)
T PRK06871 10 TYQQITQAFQQG-----LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL----- 79 (325)
T ss_pred HHHHHHHHHHcC-----CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE-----
Confidence 345566666432 245688899999999999998875521000000 00 000001111110000
Q ss_pred HHHhCCCCCCcCHHHHHHHHHHHh-----cCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecch-HHH-HHh
Q 039167 257 EALTGCLPNFVEFQSLMQHIQKHV-----AGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRKE-AVA-RIM 329 (923)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~-~~~ 329 (923)
.........+++..+ +.+.+ .+++=++|+|++...+......+...+.....++.+|++|.+. .+. +..
T Consensus 80 ---~p~~~~~I~id~iR~-l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~ 155 (325)
T PRK06871 80 ---EPIDNKDIGVDQVRE-INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIY 155 (325)
T ss_pred ---ccccCCCCCHHHHHH-HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHH
Confidence 000001122333332 22222 3566788899998877788888888887777777777777654 443 223
Q ss_pred cccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHH
Q 039167 330 GSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLAT 383 (923)
Q Consensus 330 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 383 (923)
.....+.+.+++.++..+.+..... . ... .+...++.++|.|+.+
T Consensus 156 SRC~~~~~~~~~~~~~~~~L~~~~~--~---~~~----~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 156 SRCQTWLIHPPEEQQALDWLQAQSS--A---EIS----EILTALRINYGRPLLA 200 (325)
T ss_pred hhceEEeCCCCCHHHHHHHHHHHhc--c---ChH----HHHHHHHHcCCCHHHH
Confidence 4577999999999999988876531 1 111 2456678899999644
No 184
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.15 E-value=0.014 Score=60.89 Aligned_cols=139 Identities=12% Similarity=0.089 Sum_probs=70.3
Q ss_pred EEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHH------------HHHHhCCCCCC-cCHHHH
Q 039167 206 IISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAI------------IEALTGCLPNF-VEFQSL 272 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i------------~~~l~~~~~~~-~~~~~~ 272 (923)
.|.+.|++|+|||++|+.+.+ .... ..++++.....+..+++... ........... ....
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 95 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWV-- 95 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeec--
Confidence 566899999999999999986 2222 23455555555544443221 00000000000 0000
Q ss_pred HHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcC----------------CCCcEEEEEecchHHH------H-Hh
Q 039167 273 MQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNC----------------LYGSKILITTRKEAVA------R-IM 329 (923)
Q Consensus 273 ~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~----------------~~gs~iivTtR~~~v~------~-~~ 329 (923)
...+.... .+...+++|++...+.+.+..+...+..+ .++.+||+|+....-. . ..
T Consensus 96 ~g~l~~A~-~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~ 174 (262)
T TIGR02640 96 DNRLTLAV-REGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALL 174 (262)
T ss_pred CchHHHHH-HcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHH
Confidence 00111111 23468999999776666666676666432 1256788888753110 0 01
Q ss_pred cccceEeCCCCChHHHHHHHHHh
Q 039167 330 GSTNIISVNVLSGMECWLVFESL 352 (923)
Q Consensus 330 ~~~~~~~l~~L~~~~~~~lf~~~ 352 (923)
.....+.+...+.++-.+++..+
T Consensus 175 ~R~~~i~i~~P~~~~e~~Il~~~ 197 (262)
T TIGR02640 175 DRLITIFMDYPDIDTETAILRAK 197 (262)
T ss_pred hhcEEEECCCCCHHHHHHHHHHh
Confidence 11234455555555555555544
No 185
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.14 E-value=0.0058 Score=73.69 Aligned_cols=123 Identities=17% Similarity=0.250 Sum_probs=72.9
Q ss_pred CceecchhhHHHHHHHHhcCCC---CCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENS---IEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIAR 253 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 253 (923)
..++|.++.++.+.+.+..... .......++.++|+.|+|||+||+.++.. . +...+.++++.-.+..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~---- 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKH---- 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhcc----
Confidence 4688999999988888764211 01123457899999999999999999873 2 2334555555422211
Q ss_pred HHHHHHhCCCCCCcCHHHHHHHHHHHhcCCc-eEEEecCCCCCChhhHHHhHHhhhcC
Q 039167 254 AIIEALTGCLPNFVEFQSLMQHIQKHVAGKK-LLLVLDDVWNENFHKWEQFNNCLKNC 310 (923)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~ 310 (923)
.+...++. .+.....++ ...+.+.++.++ -+++||++...+.+.++.+...+..+
T Consensus 525 ~~~~lig~-~~gyvg~~~-~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g 580 (731)
T TIGR02639 525 TVSRLIGA-PPGYVGFEQ-GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYA 580 (731)
T ss_pred cHHHHhcC-CCCCcccch-hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccC
Confidence 11122222 222111111 123344444444 49999999877777788787777544
No 186
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.12 E-value=8.1e-05 Score=65.65 Aligned_cols=81 Identities=20% Similarity=0.279 Sum_probs=36.2
Q ss_pred CceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchhhhCCCC
Q 039167 532 GLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPETLCELYN 611 (923)
Q Consensus 532 ~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~ 611 (923)
.|....+++|.+... ++.+-.+++.+..|++++|. +..+|..+..++.||.|+++.|. +...|..|..|.+
T Consensus 54 el~~i~ls~N~fk~f-p~kft~kf~t~t~lNl~~ne-------isdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~ 124 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKF-PKKFTIKFPTATTLNLANNE-------ISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIK 124 (177)
T ss_pred eEEEEecccchhhhC-CHHHhhccchhhhhhcchhh-------hhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHh
Confidence 344444444443332 12222334444445554333 44444444445555555555544 4444444444445
Q ss_pred CcEEecCCCc
Q 039167 612 LEHLNVNCCV 621 (923)
Q Consensus 612 L~~L~L~~~~ 621 (923)
|-.|+..++.
T Consensus 125 l~~Lds~~na 134 (177)
T KOG4579|consen 125 LDMLDSPENA 134 (177)
T ss_pred HHHhcCCCCc
Confidence 5555444443
No 187
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.11 E-value=0.0033 Score=76.56 Aligned_cols=45 Identities=22% Similarity=0.332 Sum_probs=37.2
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcC
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
..++||+.++.+++..|... ...-+.++|++|+|||++|+.+...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~------~~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcC------CcCceEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999654 2334668999999999999988874
No 188
>PRK08118 topology modulation protein; Reviewed
Probab=97.11 E-value=0.00026 Score=68.06 Aligned_cols=34 Identities=32% Similarity=0.578 Sum_probs=27.4
Q ss_pred EEEEEecCCChHHHHHHHHhcCcccc-cccceEEE
Q 039167 206 IISLVGMGGIGKTTLAQFAYNNGDVE-KNFEKRIW 239 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 239 (923)
.|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58999999999999999999864443 45777775
No 189
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.09 E-value=0.0034 Score=66.62 Aligned_cols=122 Identities=19% Similarity=0.198 Sum_probs=70.1
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHh
Q 039167 181 GRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALT 260 (923)
Q Consensus 181 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 260 (923)
++........+++..-.. ....+-+.|+|..|+|||.||.++++. ....-..+.+++++ .++..+.....
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~--l~~~g~~v~~~~~~------~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANE--LAKKGVSSTLLHFP------EFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEEHH------HHHHHHHHHHh
Confidence 444445555555543221 123467999999999999999999995 32222335566553 44444444432
Q ss_pred CCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHH--hHH-hhhcC-CCCcEEEEEecc
Q 039167 261 GCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQ--FNN-CLKNC-LYGSKILITTRK 322 (923)
Q Consensus 261 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~--l~~-~l~~~-~~gs~iivTtR~ 322 (923)
.. +.. ..+.. + .+-=||||||+..+....|.. +.. .+... ..+-.+|+||.-
T Consensus 205 ~~-----~~~---~~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 DG-----SVK---EKIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred cC-----cHH---HHHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 11 111 22222 2 356789999998776677864 433 33322 234568888864
No 190
>PRK06921 hypothetical protein; Provisional
Probab=97.09 E-value=0.0031 Score=65.56 Aligned_cols=100 Identities=21% Similarity=0.290 Sum_probs=55.8
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccc-cceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKN-FEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVA 281 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (923)
....+.++|..|+|||+||.++++. +... -..++++... +++..+.... +.....+. .+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~~------~l~~~l~~~~----------~~~~~~~~-~~- 175 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPFV------EGFGDLKDDF----------DLLEAKLN-RM- 175 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEHH------HHHHHHHHHH----------HHHHHHHH-Hh-
Confidence 3467899999999999999999984 3332 3445666542 2233322211 11111222 22
Q ss_pred CCceEEEecCCCC-----CChhhHHH--hHHhhhcC-CCCcEEEEEecc
Q 039167 282 GKKLLLVLDDVWN-----ENFHKWEQ--FNNCLKNC-LYGSKILITTRK 322 (923)
Q Consensus 282 ~kr~LlVlDdv~~-----~~~~~~~~--l~~~l~~~-~~gs~iivTtR~ 322 (923)
.+--||||||+.. +...+|.. +...+... ..+..+||||..
T Consensus 176 ~~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 176 KKVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred cCCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 2456999999932 22334543 44444322 234458888864
No 191
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.08 E-value=0.0091 Score=65.81 Aligned_cols=157 Identities=17% Similarity=0.201 Sum_probs=85.1
Q ss_pred CceecchhhHHHHHHHHhcC---CC----CCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHH
Q 039167 177 SEIFGRKDEKNELVDRLICE---NS----IEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEF 249 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~---~~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 249 (923)
.++.|.+...++|.+.+..+ +. .+-...+-+.++|++|.|||++|+++++. ....| +.+.. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f-----i~i~~----s 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF-----IRVVG----S 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----H
Confidence 35889888888887765311 00 01124567899999999999999999984 33333 22211 1
Q ss_pred HHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCC-------C---hhhH-HHhHHhhhc-----CCCC
Q 039167 250 RIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE-------N---FHKW-EQFNNCLKN-----CLYG 313 (923)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-------~---~~~~-~~l~~~l~~-----~~~g 313 (923)
.+. ....+ .....+...+.......+.+|++|++... . .... ..+...+.. ...+
T Consensus 214 ~l~----~k~~g-----e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~ 284 (398)
T PTZ00454 214 EFV----QKYLG-----EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTN 284 (398)
T ss_pred HHH----HHhcc-----hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCC
Confidence 111 11000 01112222233333467889999997421 0 0011 112222221 1235
Q ss_pred cEEEEEecchHHHH-Hh---c-ccceEeCCCCChHHHHHHHHHhh
Q 039167 314 SKILITTRKEAVAR-IM---G-STNIISVNVLSGMECWLVFESLA 353 (923)
Q Consensus 314 s~iivTtR~~~v~~-~~---~-~~~~~~l~~L~~~~~~~lf~~~a 353 (923)
..||.||...+... .+ + -...+++...+.++..++|....
T Consensus 285 v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~ 329 (398)
T PTZ00454 285 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTIT 329 (398)
T ss_pred EEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHH
Confidence 67888887643321 11 1 24578898888888888887654
No 192
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.08 E-value=0.002 Score=64.71 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=29.9
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEe
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCV 242 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 242 (923)
..-.++|+|..|.|||||+..+.. .....|+.+++++-
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 344688999999999999999887 36778877766643
No 193
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.07 E-value=0.0037 Score=63.74 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=58.2
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGK 283 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 283 (923)
...+.++|.+|+|||+||.++.+. ....-..++++++ .++...+-..... .....+ .+.+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it~------~~l~~~l~~~~~~---~~~~~~----~~l~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIITV------ADIMSAMKDTFSN---SETSEE----QLLNDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEH------HHHHHHHHHHHhh---ccccHH----HHHHHhc-c
Confidence 457899999999999999999984 3222334556533 3444444333211 011111 2333344 4
Q ss_pred ceEEEecCCCCCChhhHHH--hHHhhhcC-CCCcEEEEEecc
Q 039167 284 KLLLVLDDVWNENFHKWEQ--FNNCLKNC-LYGSKILITTRK 322 (923)
Q Consensus 284 r~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTtR~ 322 (923)
.=+|||||+......+|+. +...+... ...-.+||||..
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 5588999997665556664 33333322 123347777764
No 194
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0024 Score=74.33 Aligned_cols=126 Identities=16% Similarity=0.279 Sum_probs=81.8
Q ss_pred CceecchhhHHHHHHHHhcCCC---CCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENS---IEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIAR 253 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 253 (923)
.+++|.++.++.+.+.+...-. .......+....|+.|||||.||+++... .-+.=+..+-+++|.-.. +
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~--Lfg~e~aliR~DMSEy~E-----k 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA--LFGDEQALIRIDMSEYME-----K 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH--hcCCCccceeechHHHHH-----H
Confidence 4689999999999888754321 12335567888999999999999988762 211113344444443221 2
Q ss_pred HHHHHHhCCCCCCcCHHHHHHHHHHHhcCCce-EEEecCCCCCChhhHHHhHHhhhcC
Q 039167 254 AIIEALTGCLPNFVEFQSLMQHIQKHVAGKKL-LLVLDDVWNENFHKWEQFNNCLKNC 310 (923)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~ 310 (923)
.-...|-+.+|+....++ -..+-+..+.++| +|.||+|...+++..+.+...|.++
T Consensus 564 HsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred HHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 233344444455444444 4456777788888 8899999777777777777777655
No 195
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.06 E-value=0.0038 Score=76.48 Aligned_cols=138 Identities=15% Similarity=0.257 Sum_probs=79.9
Q ss_pred CceecchhhHHHHHHHHhcCCC---CCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENS---IEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIAR 253 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 253 (923)
..++|.+..++.+.+.+..... .......++.++|+.|+|||++|+.+... ....-...+.++++.-.+...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~--- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHS--- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccch---
Confidence 4689999999999998865321 01123467889999999999999999873 222222334444443222111
Q ss_pred HHHHHHhCCCCCCcCHHHHHHHHHHHhcCC-ceEEEecCCCCCChhhHHHhHHhhhcCC-----------CCcEEEEEec
Q 039167 254 AIIEALTGCLPNFVEFQSLMQHIQKHVAGK-KLLLVLDDVWNENFHKWEQFNNCLKNCL-----------YGSKILITTR 321 (923)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR 321 (923)
...+.+..++....++ ...+.+.++.+ ..+|+||++...+.+.+..+...+..+. ..+-||+||.
T Consensus 640 --~~~l~g~~~g~~g~~~-~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn 716 (852)
T TIGR03346 640 --VARLIGAPPGYVGYEE-GGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSN 716 (852)
T ss_pred --HHHhcCCCCCccCccc-ccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCC
Confidence 1122222222211111 11233333333 3499999998878888888888775541 2333777776
Q ss_pred c
Q 039167 322 K 322 (923)
Q Consensus 322 ~ 322 (923)
.
T Consensus 717 ~ 717 (852)
T TIGR03346 717 L 717 (852)
T ss_pred c
Confidence 4
No 196
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.05 E-value=0.0026 Score=77.27 Aligned_cols=138 Identities=19% Similarity=0.264 Sum_probs=77.7
Q ss_pred CceecchhhHHHHHHHHhcCCC---CCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENS---IEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIAR 253 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 253 (923)
..++|.+..++.+.+.+..... .......++.++|+.|+|||.+|+.+... .-+.....+-++++.-.+. .
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~----~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEA----H 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhh----h
Confidence 4689999999999888854211 11234568899999999999999888763 2111122222332221111 1
Q ss_pred HHHHHHhCCCCCCcCHHHHHHHHHHHhc-CCceEEEecCCCCCChhhHHHhHHhhhcCC-----------CCcEEEEEec
Q 039167 254 AIIEALTGCLPNFVEFQSLMQHIQKHVA-GKKLLLVLDDVWNENFHKWEQFNNCLKNCL-----------YGSKILITTR 321 (923)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR 321 (923)
.+ ..+.+..+.....++ ...+.+.++ ...-+|+||++...+.+.++.+...+..+. ..+-||+||.
T Consensus 640 ~~-~~l~g~~~gyvg~~~-~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSN 717 (852)
T TIGR03345 640 TV-SRLKGSPPGYVGYGE-GGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSN 717 (852)
T ss_pred hh-ccccCCCCCcccccc-cchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCC
Confidence 11 122222222221111 112333333 455699999997767777777777776542 3455677766
Q ss_pred c
Q 039167 322 K 322 (923)
Q Consensus 322 ~ 322 (923)
.
T Consensus 718 l 718 (852)
T TIGR03345 718 A 718 (852)
T ss_pred C
Confidence 4
No 197
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.04 E-value=0.001 Score=64.64 Aligned_cols=100 Identities=20% Similarity=0.250 Sum_probs=51.5
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGK 283 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 283 (923)
..-+.++|..|+|||.||..+.+. ....=..+.|+.+ .+++..+ ..... ..... ..+ +.+. +
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~--~~~~g~~v~f~~~------~~L~~~l----~~~~~-~~~~~---~~~-~~l~-~ 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANE--AIRKGYSVLFITA------SDLLDEL----KQSRS-DGSYE---ELL-KRLK-R 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEH------HHHHHHH----HCCHC-CTTHC---HHH-HHHH-T
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHH--hccCCcceeEeec------Cceeccc----ccccc-ccchh---hhc-Cccc-c
Confidence 356999999999999999999874 2222223556643 3344433 22111 11111 122 2333 3
Q ss_pred ceEEEecCCCCCChhhHHH--hHHhhhcC-CCCcEEEEEecc
Q 039167 284 KLLLVLDDVWNENFHKWEQ--FNNCLKNC-LYGSKILITTRK 322 (923)
Q Consensus 284 r~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTtR~ 322 (923)
-=||||||+.......|.. +...+... ..+ .+||||.-
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~ 149 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNL 149 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS
T ss_pred ccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCC
Confidence 4678899997665445543 33333221 223 58888874
No 198
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.02 E-value=0.024 Score=60.81 Aligned_cols=93 Identities=14% Similarity=0.170 Sum_probs=66.6
Q ss_pred CCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecc-hHHH-HHhcccceEeCCCCChHHHHHHHHHhhcCCCCc
Q 039167 282 GKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRK-EAVA-RIMGSTNIISVNVLSGMECWLVFESLAFVGKSM 359 (923)
Q Consensus 282 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 359 (923)
+++-++|+|++...+...+..+...+.....++.+|++|.+ ..+. +.......+.+.+++.++..+.+.... ..
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~~- 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---VA- 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---CC-
Confidence 45568889999888888899999988877777766666655 4444 333456799999999999998887641 11
Q ss_pred cchhhHHHHHHHHHHhcCCChHHHHHH
Q 039167 360 EERENLEKIGREITRKCKGLPLATKTI 386 (923)
Q Consensus 360 ~~~~~~~~~~~~i~~~c~GlPLai~~~ 386 (923)
. ...++..++|.|..+..+
T Consensus 207 ----~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 207 ----D----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred ----h----HHHHHHHcCCCHHHHHHH
Confidence 1 123577889999765544
No 199
>PRK09183 transposase/IS protein; Provisional
Probab=97.00 E-value=0.0036 Score=64.90 Aligned_cols=100 Identities=21% Similarity=0.213 Sum_probs=52.3
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCc
Q 039167 205 HIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKK 284 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 284 (923)
..+.|+|++|+|||+||..+.+... ...+ .+.++. ..++...+...... . .....+.+. ..+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~-~~G~-~v~~~~------~~~l~~~l~~a~~~-----~---~~~~~~~~~-~~~~ 165 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV-RAGI-KVRFTT------AADLLLQLSTAQRQ-----G---RYKTTLQRG-VMAP 165 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH-HcCC-eEEEEe------HHHHHHHHHHHHHC-----C---cHHHHHHHH-hcCC
Confidence 4677999999999999999976311 1222 233443 22333333222111 0 111222222 2355
Q ss_pred eEEEecCCCCCChhhHH--HhHHhhhcC-CCCcEEEEEecc
Q 039167 285 LLLVLDDVWNENFHKWE--QFNNCLKNC-LYGSKILITTRK 322 (923)
Q Consensus 285 ~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTtR~ 322 (923)
-++|+||+.......+. .+...+... ..++ +|+||..
T Consensus 166 dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 166 RLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred CEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 69999999654333332 244444321 2354 8888874
No 200
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.00 E-value=0.00092 Score=65.60 Aligned_cols=132 Identities=24% Similarity=0.291 Sum_probs=63.4
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeC----Ccc-----cHH--
Q 039167 181 GRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVS----DPF-----DEF-- 249 (923)
Q Consensus 181 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s----~~~-----~~~-- 249 (923)
.+..+-...++.|. ...++.+.|++|.|||.||.+..-+.-..+.|+..+++.-. +.. +..
T Consensus 4 p~~~~Q~~~~~al~--------~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALL--------NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHH--------H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHH--------hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 34556666777775 23589999999999999997776654445788887776521 111 000
Q ss_pred --HHHHHHHHHHhCCCCCCcCHHHHHHH------HHHHhcCC---ceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEE
Q 039167 250 --RIARAIIEALTGCLPNFVEFQSLMQH------IQKHVAGK---KLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILI 318 (923)
Q Consensus 250 --~~~~~i~~~l~~~~~~~~~~~~~~~~------l~~~l~~k---r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv 318 (923)
-...-+...+..-. .....+.+... -..+++|+ ...||+|+.++.+. ++++..+...+.|||||+
T Consensus 76 ~~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~---~~~k~ilTR~g~~skii~ 151 (205)
T PF02562_consen 76 MEPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTP---EELKMILTRIGEGSKIII 151 (205)
T ss_dssp --TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--H---HHHHHHHTTB-TT-EEEE
T ss_pred HHHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCH---HHHHHHHcccCCCcEEEE
Confidence 01111112221111 11111111110 01133444 46999999977654 455666767788999999
Q ss_pred EecchH
Q 039167 319 TTRKEA 324 (923)
Q Consensus 319 TtR~~~ 324 (923)
+=-..+
T Consensus 152 ~GD~~Q 157 (205)
T PF02562_consen 152 TGDPSQ 157 (205)
T ss_dssp EE----
T ss_pred ecCcee
Confidence 975543
No 201
>PRK06526 transposase; Provisional
Probab=96.97 E-value=0.0017 Score=66.82 Aligned_cols=101 Identities=20% Similarity=0.209 Sum_probs=53.0
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGK 283 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 283 (923)
..-+.|+|++|+|||+||..+.... ....+ .+.|+ +..++...+..... . . .....+.+. .+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a-~~~g~-~v~f~------t~~~l~~~l~~~~~----~-~---~~~~~l~~l--~~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA-CQAGH-RVLFA------TAAQWVARLAAAHH----A-G---RLQAELVKL--GR 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHH-HHCCC-chhhh------hHHHHHHHHHHHHh----c-C---cHHHHHHHh--cc
Confidence 3468999999999999999997742 12222 23332 23344444432211 0 1 111223222 23
Q ss_pred ceEEEecCCCCCChhhHH--HhHHhhhcC-CCCcEEEEEecch
Q 039167 284 KLLLVLDDVWNENFHKWE--QFNNCLKNC-LYGSKILITTRKE 323 (923)
Q Consensus 284 r~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTtR~~ 323 (923)
.-+|||||+.......+. .+...+... ..++ +|+||...
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 568999999643222222 244444321 2344 88888753
No 202
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.97 E-value=0.00033 Score=69.17 Aligned_cols=251 Identities=19% Similarity=0.130 Sum_probs=139.5
Q ss_pred ccccccccCCceEEEeCCCCCCCcc---chHHhhcCCcccEEeccccCCccccccccccc-------ccccCCCCCcEEe
Q 039167 523 IYDNIEALRGLRSLLLESTKHSSVI---LPQLFDKLTCLRALKLEVHNERLPEDFIKEVP-------TNIEKLLHLKYLN 592 (923)
Q Consensus 523 ~~~~~~~~~~Lr~L~l~~~~~~~~~---l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-------~~i~~l~~L~~L~ 592 (923)
....+..+..+..+++++|.+.... +...+.+-++|++.+++.-. .+....++| +.+-+|++|+..+
T Consensus 22 v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f---tgr~kde~~~~L~~Ll~aLlkcp~l~~v~ 98 (388)
T COG5238 22 VVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF---TGRDKDELYSNLVMLLKALLKCPRLQKVD 98 (388)
T ss_pred HHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh---hcccHHHHHHHHHHHHHHHhcCCcceeee
Confidence 3445556788899999999876532 34456677889998887422 111222333 4466899999999
Q ss_pred ccCCCCccccc----hhhhCCCCCcEEecCCCccccccCc-ccc-------------CCCCCCEEeCCCCcccccCCcCC
Q 039167 593 LANQMEIERLP----ETLCELYNLEHLNVNCCVKLRELPQ-GIG-------------RLRKLMYLDNECTVSLRYLPVGI 654 (923)
Q Consensus 593 L~~~~~l~~lp----~~i~~L~~L~~L~L~~~~~l~~lp~-~i~-------------~L~~L~~L~l~~~~~l~~~p~~i 654 (923)
||+|-+-...| +.|++-++|.+|.+++|. +..+.. .|+ .-+.|+......| .+...|...
T Consensus 99 LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN-Rlengs~~~ 176 (388)
T COG5238 99 LSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN-RLENGSKEL 176 (388)
T ss_pred ccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc-hhccCcHHH
Confidence 99997444444 457788999999999997 554322 122 2345555554444 222222111
Q ss_pred CCCCCCCcCCceEecccCCcccccccccCCCCCCCceEeCCCCCCC-hhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccc
Q 039167 655 GKLIRLRRVKEFVVGGGYGRACSLGSLKKLNLLRDCRIRGLGDVSD-VDEARRAELEKKKNLFELKLHFDQAGRRENEED 733 (923)
Q Consensus 655 ~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 733 (923)
. -..++.-..|+.+.+...+.-+. ..-.....+..+.+|+.|+|..|.++. .
T Consensus 177 ~----------------------a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~-----~ 229 (388)
T COG5238 177 S----------------------AALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL-----E 229 (388)
T ss_pred H----------------------HHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhh-----h
Confidence 0 00111112233333332222111 011122334456777888887776432 1
Q ss_pred hHHHHhhcCCCCCCCCcEEEeeecCCCCCcCccccc-----ccccccEEeEeCCCCCC------CCCC--CCCCCCccce
Q 039167 734 EDERLLEALGPPPNLKELWINKYRGKRNVVPKNWIM-----SLTNLRFLGLHEWRNCE------HLPP--LGKLPSLESL 800 (923)
Q Consensus 734 ~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~-----~l~~L~~L~L~~~~~~~------~l~~--l~~L~~L~~L 800 (923)
.....-..++..++|++|.+..|....... .+.+. ..++|..|.+.+|..-. .++. -+.+|-|..|
T Consensus 230 gS~~La~al~~W~~lrEL~lnDClls~~G~-~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~l 308 (388)
T COG5238 230 GSRYLADALCEWNLLRELRLNDCLLSNEGV-KSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDL 308 (388)
T ss_pred hHHHHHHHhcccchhhhccccchhhccccH-HHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHH
Confidence 112233456666778888887775443111 11111 45777777777664211 1333 3568888899
Q ss_pred eccCCc
Q 039167 801 YIAGMK 806 (923)
Q Consensus 801 ~L~~~~ 806 (923)
.+.+|.
T Consensus 309 e~ngNr 314 (388)
T COG5238 309 ERNGNR 314 (388)
T ss_pred HHccCc
Confidence 888876
No 203
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.95 E-value=0.00067 Score=79.72 Aligned_cols=108 Identities=24% Similarity=0.245 Sum_probs=77.3
Q ss_pred cccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccc--hh
Q 039167 528 EALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLP--ET 605 (923)
Q Consensus 528 ~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp--~~ 605 (923)
..+|.|++|.+.+-.+....+...+.++++|+.||++++ .+..+ ..+++|++|+.|.+++=. +..-+ ..
T Consensus 145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-------nI~nl-~GIS~LknLq~L~mrnLe-~e~~~~l~~ 215 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-------NISNL-SGISRLKNLQVLSMRNLE-FESYQDLID 215 (699)
T ss_pred hhCcccceEEecCceecchhHHHHhhccCccceeecCCC-------CccCc-HHHhccccHHHHhccCCC-CCchhhHHH
Confidence 467889999988866544344555688999999999954 46666 678899999999888765 44322 34
Q ss_pred hhCCCCCcEEecCCCccccccCcc-------ccCCCCCCEEeCCCCc
Q 039167 606 LCELYNLEHLNVNCCVKLRELPQG-------IGRLRKLMYLDNECTV 645 (923)
Q Consensus 606 i~~L~~L~~L~L~~~~~l~~lp~~-------i~~L~~L~~L~l~~~~ 645 (923)
+.+|++|++||++...... -|.- -..|++||+||.+++.
T Consensus 216 LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcc
Confidence 7889999999998765322 2211 1248899999998774
No 204
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.95 E-value=0.0054 Score=59.91 Aligned_cols=120 Identities=19% Similarity=0.250 Sum_probs=70.6
Q ss_pred CCCCceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHH
Q 039167 174 IDESEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIAR 253 (923)
Q Consensus 174 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 253 (923)
++-..++|.|...+.+++--..-.. +...--|.+||..|.|||+|++++.+ ++....-.. |.|.+.
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~--G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glrL--VEV~k~-------- 122 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAE--GLPANNVLLWGARGTGKSSLVKALLN--EYADEGLRL--VEVDKE-------- 122 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHc--CCcccceEEecCCCCChHHHHHHHHH--HHHhcCCeE--EEEcHH--------
Confidence 3344689998888888764332211 22334578999999999999999998 344433322 222221
Q ss_pred HHHHHHhCCCCCCcCHHHHHHHHHHHh--cCCceEEEecCCCCC-ChhhHHHhHHhhhcCC---CCcEEEEEecc
Q 039167 254 AIIEALTGCLPNFVEFQSLMQHIQKHV--AGKKLLLVLDDVWNE-NFHKWEQFNNCLKNCL---YGSKILITTRK 322 (923)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~---~gs~iivTtR~ 322 (923)
+...+. .|.+.| ..+||.|..||+--+ ....+..++..+..+- +...++..|.+
T Consensus 123 --------------dl~~Lp-~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 123 --------------DLATLP-DLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred --------------HHhhHH-HHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 111111 122222 467999999999433 3467888888886542 33344444444
No 205
>CHL00176 ftsH cell division protein; Validated
Probab=96.93 E-value=0.018 Score=67.39 Aligned_cols=177 Identities=20% Similarity=0.199 Sum_probs=94.6
Q ss_pred CceecchhhHHHHHH---HHhcCCC---CCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHH
Q 039167 177 SEIFGRKDEKNELVD---RLICENS---IEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFR 250 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~---~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 250 (923)
.++.|.++..+++.+ ++..... ......+-|.++|++|+|||++|+++++. .... |+.++. .+
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e--~~~p-----~i~is~----s~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AEVP-----FFSISG----SE 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC-----eeeccH----HH
Confidence 357887766655544 4332211 01123456899999999999999999883 2222 233321 11
Q ss_pred HHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCC----------ChhhHHH-hHHhh---hc--CCCCc
Q 039167 251 IARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE----------NFHKWEQ-FNNCL---KN--CLYGS 314 (923)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~----------~~~~~~~-l~~~l---~~--~~~gs 314 (923)
+... .. ......+...+.+.....+.+|+|||+..- ....+++ +...+ .. ...+-
T Consensus 252 f~~~----~~-----g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 252 FVEM----FV-----GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred HHHH----hh-----hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 1100 00 011122334445555678899999999421 0112222 22222 11 22355
Q ss_pred EEEEEecchHHHH-Hh---c-ccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCC
Q 039167 315 KILITTRKEAVAR-IM---G-STNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKG 378 (923)
Q Consensus 315 ~iivTtR~~~v~~-~~---~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G 378 (923)
.||.||...+... .+ + -...+.++..+.++-.++++.++-... ..+ ......+++.+.|
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~---~~~--d~~l~~lA~~t~G 386 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK---LSP--DVSLELIARRTPG 386 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc---cch--hHHHHHHHhcCCC
Confidence 6777776644322 11 1 145788888898888888887764311 111 1224667777777
No 206
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.92 E-value=0.019 Score=66.13 Aligned_cols=178 Identities=16% Similarity=0.188 Sum_probs=91.2
Q ss_pred CceecchhhHHHHHHHHh---cCCC---CCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHH
Q 039167 177 SEIFGRKDEKNELVDRLI---CENS---IEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFR 250 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 250 (923)
.+++|.++..+++.+.+. .... ......+-+.++|++|+|||++|+.+++. .... ++.++. .+
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~--~~~~-----~~~i~~----~~ 123 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AGVP-----FFSISG----SD 123 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCC-----eeeccH----HH
Confidence 357888776665554332 2110 01123456889999999999999999884 2222 222221 11
Q ss_pred HHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCC----------hhhHHHhHH-h---hhc--CCCCc
Q 039167 251 IARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNEN----------FHKWEQFNN-C---LKN--CLYGS 314 (923)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~~~l~~-~---l~~--~~~gs 314 (923)
+.. ...+ .....+...+.......+.+|+|||+..-. ...+..... . +.. ...+-
T Consensus 124 ~~~----~~~g-----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v 194 (495)
T TIGR01241 124 FVE----MFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGV 194 (495)
T ss_pred HHH----HHhc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCe
Confidence 111 1000 111223333444445567899999983310 111222221 2 211 12344
Q ss_pred EEEEEecchH-HHHHh----cccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCC
Q 039167 315 KILITTRKEA-VARIM----GSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGL 379 (923)
Q Consensus 315 ~iivTtR~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~Gl 379 (923)
.||.||...+ +-..+ .-...+.++..+.++-.++|....-.... ....+ ...+++.+.|.
T Consensus 195 ~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~~~----l~~la~~t~G~ 259 (495)
T TIGR01241 195 IVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-APDVD----LKAVARRTPGF 259 (495)
T ss_pred EEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Ccchh----HHHHHHhCCCC
Confidence 5666676543 11111 12457889988888888888876532211 11112 34677777773
No 207
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0031 Score=71.36 Aligned_cols=164 Identities=16% Similarity=0.211 Sum_probs=89.3
Q ss_pred CCCceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHH
Q 039167 175 DESEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARA 254 (923)
Q Consensus 175 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 254 (923)
-+.+-+|.++..++|+++|.-..-...-.-.++.+||++|||||+|++.+++ .....|- -++++.--|..++
T Consensus 321 Ld~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkfv---R~sLGGvrDEAEI--- 392 (782)
T COG0466 321 LDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFV---RISLGGVRDEAEI--- 392 (782)
T ss_pred hcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEE---EEecCccccHHHh---
Confidence 3556899999999999998543221223457999999999999999999998 4555552 2333333332222
Q ss_pred HHHHHhCCCCCCcCHHHHHHHHHH---HhcCCceEEEecCCCCCChh----hHHHhHHhhh-cCCC------------Cc
Q 039167 255 IIEALTGCLPNFVEFQSLMQHIQK---HVAGKKLLLVLDDVWNENFH----KWEQFNNCLK-NCLY------------GS 314 (923)
Q Consensus 255 i~~~l~~~~~~~~~~~~~~~~l~~---~l~~kr~LlVlDdv~~~~~~----~~~~l~~~l~-~~~~------------gs 314 (923)
.++.. .=...+-..+-+ ..+.+.-+++||.+.....+ --..+...|. ..++ =|
T Consensus 393 -----RGHRR--TYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS 465 (782)
T COG0466 393 -----RGHRR--TYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLS 465 (782)
T ss_pred -----ccccc--cccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchh
Confidence 11100 000111111222 23567889999998432211 1112222221 1111 14
Q ss_pred EEEE-Eec-chH-HH-HHhcccceEeCCCCChHHHHHHHHHhh
Q 039167 315 KILI-TTR-KEA-VA-RIMGSTNIISVNVLSGMECWLVFESLA 353 (923)
Q Consensus 315 ~iiv-TtR-~~~-v~-~~~~~~~~~~l~~L~~~~~~~lf~~~a 353 (923)
+|++ ||- +-+ +. .-++...++++.+-+++|-.+.-+++.
T Consensus 466 ~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 466 KVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred heEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 4433 333 222 22 223556788888888888776665543
No 208
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.91 E-value=0.0054 Score=67.79 Aligned_cols=152 Identities=14% Similarity=0.173 Sum_probs=83.6
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHH-H
Q 039167 178 EIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAI-I 256 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i-~ 256 (923)
.++||++.++.+...+.... -|.|.|++|+|||++|+.+.........|... -+..+. +.+++..+ +
T Consensus 21 ~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~-~~~ftt---p~DLfG~l~i 88 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFAFQNARAFEYL-MTRFST---PEEVFGPLSI 88 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHHhcccCcceee-eeeecC---cHHhcCcHHH
Confidence 48899999999988886543 48899999999999999998732222233311 111111 12222111 1
Q ss_pred HHHhCCCCCCcCHHHHHHHHHHHhcC---CceEEEecCCCCCChhhHHHhHHhhhcCC---------CCcEEEEEecchH
Q 039167 257 EALTGCLPNFVEFQSLMQHIQKHVAG---KKLLLVLDDVWNENFHKWEQFNNCLKNCL---------YGSKILITTRKEA 324 (923)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~l~~~l~~---kr~LlVlDdv~~~~~~~~~~l~~~l~~~~---------~gs~iivTtR~~~ 324 (923)
..... . ..+.+...| .--++++|+++..+......+...+.... -..+++|++.++-
T Consensus 89 ~~~~~----~-------g~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~L 157 (498)
T PRK13531 89 QALKD----E-------GRYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNEL 157 (498)
T ss_pred hhhhh----c-------CchhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCC
Confidence 11100 0 001111111 12289999999887777777777663221 1235666555531
Q ss_pred HH------HHhcc-cceEeCCCCChHH-HHHHHHHh
Q 039167 325 VA------RIMGS-TNIISVNVLSGME-CWLVFESL 352 (923)
Q Consensus 325 v~------~~~~~-~~~~~l~~L~~~~-~~~lf~~~ 352 (923)
-. ..+.. .-.+.+++++.++ -.+++...
T Consensus 158 PE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 158 PEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred cccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 11 11111 3468899998544 46777653
No 209
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.85 E-value=0.034 Score=59.86 Aligned_cols=178 Identities=10% Similarity=0.036 Sum_probs=103.2
Q ss_pred hhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCc---ccccccce-----EEEEEeCCcccHHHHHHHH
Q 039167 184 DEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNG---DVEKNFEK-----RIWVCVSDPFDEFRIARAI 255 (923)
Q Consensus 184 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~~F~~-----~~wv~~s~~~~~~~~~~~i 255 (923)
..-+++...+..+ .-...+-+.|+.|+||+++|.++.... .....-.| .-++..+..+|...+
T Consensus 9 ~~~~~l~~~~~~~-----rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i---- 79 (334)
T PRK07993 9 PDYEQLVGSYQAG-----RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL---- 79 (334)
T ss_pred HHHHHHHHHHHcC-----CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE----
Confidence 3456666666432 356788999999999999998765421 00000000 001101111111000
Q ss_pred HHHHhCCCC-CCcCHHHHHHHHHHHh-----cCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecc-hHHH-H
Q 039167 256 IEALTGCLP-NFVEFQSLMQHIQKHV-----AGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRK-EAVA-R 327 (923)
Q Consensus 256 ~~~l~~~~~-~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~-~ 327 (923)
..... ....+++... +.+.+ .+++=++|+|+....+......+...+.....++.+|++|.+ ..+. +
T Consensus 80 ----~p~~~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpT 154 (334)
T PRK07993 80 ----TPEKGKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLAT 154 (334)
T ss_pred ----ecccccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHH
Confidence 00000 1122333333 22222 366778999999877777888888888777667777777765 4444 3
Q ss_pred HhcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHH
Q 039167 328 IMGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATK 384 (923)
Q Consensus 328 ~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 384 (923)
.......+.+.+++.+++.+.+..... .. .+.+..+++.++|.|..+.
T Consensus 155 IrSRCq~~~~~~~~~~~~~~~L~~~~~-----~~----~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 155 LRSRCRLHYLAPPPEQYALTWLSREVT-----MS----QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred HHhccccccCCCCCHHHHHHHHHHccC-----CC----HHHHHHHHHHcCCCHHHHH
Confidence 334567899999999999888865321 11 1125678999999996543
No 210
>PRK04296 thymidine kinase; Provisional
Probab=96.83 E-value=0.0033 Score=62.01 Aligned_cols=112 Identities=13% Similarity=0.021 Sum_probs=60.5
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCC--CcCHHHHHHHHHHHhcC
Q 039167 205 HIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPN--FVEFQSLMQHIQKHVAG 282 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~ 282 (923)
.++.|+|..|.||||+|..+... ...+-..++.+. ..++.......+++.++..... ....++....+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 47889999999999999888763 322322333331 1112222233344444432211 1233444444444 334
Q ss_pred CceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecch
Q 039167 283 KKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRKE 323 (923)
Q Consensus 283 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 323 (923)
+.-+||+|.+..-+.++...+...+ ...|..||+|.++.
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~ 116 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDT 116 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCc
Confidence 5569999999543222222333332 23477899999874
No 211
>PHA00729 NTP-binding motif containing protein
Probab=96.83 E-value=0.01 Score=59.02 Aligned_cols=25 Identities=32% Similarity=0.292 Sum_probs=22.0
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
+...|.|+|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999873
No 212
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.81 E-value=7.7e-05 Score=83.12 Aligned_cols=21 Identities=33% Similarity=0.248 Sum_probs=17.3
Q ss_pred cccccccCCceEEEeCCCCCC
Q 039167 524 YDNIEALRGLRSLLLESTKHS 544 (923)
Q Consensus 524 ~~~~~~~~~Lr~L~l~~~~~~ 544 (923)
+-.+..++.||.|.+.+++++
T Consensus 102 pi~ifpF~sLr~LElrg~~L~ 122 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLS 122 (1096)
T ss_pred CceeccccceeeEEecCcchh
Confidence 556778999999999998754
No 213
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.81 E-value=0.0063 Score=74.30 Aligned_cols=138 Identities=13% Similarity=0.196 Sum_probs=78.5
Q ss_pred CceecchhhHHHHHHHHhcCCC---CCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENS---IEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIAR 253 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 253 (923)
..++|.+..++.+.+.+..... .......++.++|+.|+|||+||+.+.+. .-..-...+-++++.-.+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccH--
Confidence 5689999999999887753211 01223456778999999999999988762 2111123334444432221111
Q ss_pred HHHHHHhCCCCCCcCHHHHHHHHHHHhcCCc-eEEEecCCCCCChhhHHHhHHhhhcCC-----------CCcEEEEEec
Q 039167 254 AIIEALTGCLPNFVEFQSLMQHIQKHVAGKK-LLLVLDDVWNENFHKWEQFNNCLKNCL-----------YGSKILITTR 321 (923)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR 321 (923)
..-++ ..++....++ ...+.+.++.++ -+++||++...+.+.+..+...+..+. ..+-||+||.
T Consensus 585 --~~l~g-~~~gyvg~~~-~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn 660 (821)
T CHL00095 585 --SKLIG-SPPGYVGYNE-GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSN 660 (821)
T ss_pred --HHhcC-CCCcccCcCc-cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCC
Confidence 11122 1222111111 123445555555 489999998777777888887776541 2445666766
Q ss_pred c
Q 039167 322 K 322 (923)
Q Consensus 322 ~ 322 (923)
.
T Consensus 661 ~ 661 (821)
T CHL00095 661 L 661 (821)
T ss_pred c
Confidence 4
No 214
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.80 E-value=0.014 Score=55.06 Aligned_cols=125 Identities=22% Similarity=0.251 Sum_probs=73.8
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEe---C------------------C-----------------
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCV---S------------------D----------------- 244 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~---s------------------~----------------- 244 (923)
.-..+.++|+.|.||||+.+.+|...+.. ...+|+.- + +
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 34589999999999999999999853321 12333320 0 0
Q ss_pred ----cccHHHHHHHHHHHH---hCC-----CCC-CcCHHHHHHHHHHHhcCCceEEEecCCC-C-CChhhHHHhHHhhhc
Q 039167 245 ----PFDEFRIARAIIEAL---TGC-----LPN-FVEFQSLMQHIQKHVAGKKLLLVLDDVW-N-ENFHKWEQFNNCLKN 309 (923)
Q Consensus 245 ----~~~~~~~~~~i~~~l---~~~-----~~~-~~~~~~~~~~l~~~l~~kr~LlVlDdv~-~-~~~~~~~~l~~~l~~ 309 (923)
.....++.+.+.+.+ +.. .|. -...++..-.|.+.+-+++-+++-|.-- + +..-.|+.+.-+-.-
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeei 183 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI 183 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHH
Confidence 011223333333322 221 122 2233444556778888899999999431 1 222456655554444
Q ss_pred CCCCcEEEEEecchHHHHHhc
Q 039167 310 CLYGSKILITTRKEAVARIMG 330 (923)
Q Consensus 310 ~~~gs~iivTtR~~~v~~~~~ 330 (923)
+..|..||++|.+.++-..+.
T Consensus 184 nr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 184 NRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred hhcCcEEEEEeccHHHHHhcc
Confidence 567999999999988876653
No 215
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.79 E-value=0.0015 Score=69.54 Aligned_cols=51 Identities=20% Similarity=0.317 Sum_probs=42.1
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcC
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.+++|.++.++++++++...........+++.++|++|+||||||+.+.+.
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 379999999999999997644312335689999999999999999999874
No 216
>PRK04132 replication factor C small subunit; Provisional
Probab=96.77 E-value=0.039 Score=65.96 Aligned_cols=155 Identities=11% Similarity=-0.003 Sum_probs=97.1
Q ss_pred cCCChHHHHHHHHhcCccccccc-ceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEec
Q 039167 212 MGGIGKTTLAQFAYNNGDVEKNF-EKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLD 290 (923)
Q Consensus 212 ~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlD 290 (923)
|.++||||+|..++++. ....+ ...+-+++|+..... ..+.+++......+- -..+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGIN-VIREKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 78899999999999842 12222 235677777654444 333443333211110 01245799999
Q ss_pred CCCCCChhhHHHhHHhhhcCCCCcEEEEEecc-hHHHHH-hcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHH
Q 039167 291 DVWNENFHKWEQFNNCLKNCLYGSKILITTRK-EAVARI-MGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKI 368 (923)
Q Consensus 291 dv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~ 368 (923)
++...+.+....++..+.......++|++|.+ ..+... ...+..+++.+++.++....+...+-..+-... .+.
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~----~e~ 713 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT----EEG 713 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC----HHH
Confidence 99887777888888888765556666666655 333322 234679999999999988877765432111111 335
Q ss_pred HHHHHHhcCCChHHHHHH
Q 039167 369 GREITRKCKGLPLATKTI 386 (923)
Q Consensus 369 ~~~i~~~c~GlPLai~~~ 386 (923)
...|++.++|.+-.+..+
T Consensus 714 L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 714 LQAILYIAEGDMRRAINI 731 (846)
T ss_pred HHHHHHHcCCCHHHHHHH
Confidence 788999999988554433
No 217
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.76 E-value=0.064 Score=60.86 Aligned_cols=204 Identities=15% Similarity=0.078 Sum_probs=118.8
Q ss_pred CCceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcc------cccccceEEEEEeCCcccHH
Q 039167 176 ESEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGD------VEKNFEKRIWVCVSDPFDEF 249 (923)
Q Consensus 176 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~------~~~~F~~~~wv~~s~~~~~~ 249 (923)
+..+-+|+.+..+|.+.+...-.. +..-..+-|.|.+|.|||..+..|.+... --..|+ .+.|+.-.-..+.
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~ 472 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPR 472 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHH
Confidence 344678999999999888654331 23455999999999999999999987422 122343 3455555556789
Q ss_pred HHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhc-----CCceEEEecCCCCCChhhHHHhHHhhhcCC-CCcEEEEEecch
Q 039167 250 RIARAIIEALTGCLPNFVEFQSLMQHIQKHVA-----GKKLLLVLDDVWNENFHKWEQFNNCLKNCL-YGSKILITTRKE 323 (923)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-~gs~iivTtR~~ 323 (923)
+++..|.+++.+... ........+..++. .+..++++|++..-=...-+.+...|.|.. ++||++|-+=..
T Consensus 473 ~~Y~~I~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaN 549 (767)
T KOG1514|consen 473 EIYEKIWEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIAN 549 (767)
T ss_pred HHHHHHHHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecc
Confidence 999999999976532 22333444444443 457899999872211112345667777653 688877654311
Q ss_pred --H---------HHHHhcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHH
Q 039167 324 --A---------VARIMGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTI 386 (923)
Q Consensus 324 --~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 386 (923)
+ |+..+| ...+...|-+.++-.+....+..+. +.......+-++++|+...|-.-.|+.+.
T Consensus 550 TmdlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic 621 (767)
T KOG1514|consen 550 TMDLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDIC 621 (767)
T ss_pred cccCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHH
Confidence 1 111111 2345566666666666665544322 11222233334555555555555554443
No 218
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.76 E-value=0.0065 Score=59.31 Aligned_cols=36 Identities=28% Similarity=0.556 Sum_probs=28.8
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEE
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWV 240 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 240 (923)
...+|.+.|+.|+||||+|+.+++ +....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 556999999999999999999988 455555555555
No 219
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.045 Score=59.70 Aligned_cols=149 Identities=21% Similarity=0.221 Sum_probs=86.1
Q ss_pred CCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHh
Q 039167 201 QKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHV 280 (923)
Q Consensus 201 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 280 (923)
......+.+.|++|+|||+||..+... ..|+.+=-++-.+-.... +..............-
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSpe~miG~s---------------EsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISPEDMIGLS---------------ESAKCAHIKKIFEDAY 595 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeChHHccCcc---------------HHHHHHHHHHHHHHhh
Confidence 346778899999999999999999863 566643333211110000 0011112222333344
Q ss_pred cCCceEEEecCCCCCChhhH------------HHhHHhhhcCC-CCcE--EEEEecchHHHHHhcc----cceEeCCCCC
Q 039167 281 AGKKLLLVLDDVWNENFHKW------------EQFNNCLKNCL-YGSK--ILITTRKEAVARIMGS----TNIISVNVLS 341 (923)
Q Consensus 281 ~~kr~LlVlDdv~~~~~~~~------------~~l~~~l~~~~-~gs~--iivTtR~~~v~~~~~~----~~~~~l~~L~ 341 (923)
+..--.||+||+.. .-+| ..+..++.... .|-| |+-||....|.+.|+- ...|+++-++
T Consensus 596 kS~lsiivvDdiEr--LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 596 KSPLSIIVVDDIER--LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred cCcceEEEEcchhh--hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 56678999999932 2223 33444444332 3444 4457777888888764 4588999988
Q ss_pred h-HHHHHHHHHhh-cCCCCccchhhHHHHHHHHHHhc
Q 039167 342 G-MECWLVFESLA-FVGKSMEERENLEKIGREITRKC 376 (923)
Q Consensus 342 ~-~~~~~lf~~~a-~~~~~~~~~~~~~~~~~~i~~~c 376 (923)
. ++..+.++..- |. +.....++++.+.+|
T Consensus 674 ~~~~~~~vl~~~n~fs------d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 674 TGEQLLEVLEELNIFS------DDEVRAIAEQLLSKK 704 (744)
T ss_pred chHHHHHHHHHccCCC------cchhHHHHHHHhccc
Confidence 7 77777776643 32 223344556666555
No 220
>PRK07261 topology modulation protein; Provisional
Probab=96.74 E-value=0.0038 Score=60.38 Aligned_cols=65 Identities=15% Similarity=0.229 Sum_probs=39.1
Q ss_pred EEEEEecCCChHHHHHHHHhcCccc-ccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCc
Q 039167 206 IISLVGMGGIGKTTLAQFAYNNGDV-EKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKK 284 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 284 (923)
.|.|+|++|+||||||+.+...... .-+.|...|-... ...+.++....+.+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~ 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW---------------------QERDDDDMIADISNFLLKHD 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc---------------------ccCCHHHHHHHHHHHHhCCC
Confidence 4899999999999999998764221 1234544452111 11223444555566666655
Q ss_pred eEEEecCCC
Q 039167 285 LLLVLDDVW 293 (923)
Q Consensus 285 ~LlVlDdv~ 293 (923)
.|+|...
T Consensus 61 --wIidg~~ 67 (171)
T PRK07261 61 --WIIDGNY 67 (171)
T ss_pred --EEEcCcc
Confidence 6778773
No 221
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.73 E-value=0.0065 Score=64.98 Aligned_cols=102 Identities=18% Similarity=0.130 Sum_probs=63.6
Q ss_pred hhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCccccc-ccce-EEEEEeCCc-ccHHHHHHHHHHHHh
Q 039167 184 DEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEK-NFEK-RIWVCVSDP-FDEFRIARAIIEALT 260 (923)
Q Consensus 184 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~-~~wv~~s~~-~~~~~~~~~i~~~l~ 260 (923)
....++++.+..-. .-+-+.|+|.+|+|||||++.+.+. +.. +-+. ++|+.+.+. .++.++.+.+...+.
T Consensus 118 ~~~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vv 190 (380)
T PRK12608 118 DLSMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVY 190 (380)
T ss_pred chhHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEE
Confidence 34456888876432 2345699999999999999998873 322 2233 366666654 467788888877666
Q ss_pred CCCCCCcCHHH-----HHHHHHHHh--cCCceEEEecCC
Q 039167 261 GCLPNFVEFQS-----LMQHIQKHV--AGKKLLLVLDDV 292 (923)
Q Consensus 261 ~~~~~~~~~~~-----~~~~l~~~l--~~kr~LlVlDdv 292 (923)
....+...... ....+.+.+ .+++++||+|++
T Consensus 191 ast~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 191 ASTFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred eecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 43322211111 111222222 589999999999
No 222
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.70 E-value=0.012 Score=64.16 Aligned_cols=145 Identities=17% Similarity=0.158 Sum_probs=86.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCccccc-------------------ccceEE
Q 039167 178 EIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEK-------------------NFEKRI 238 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~ 238 (923)
.++|-+....++..+..... .....+-++|+.|+||||+|..+.+...-.. ..+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 35677788888888886432 2344699999999999999988876411100 112344
Q ss_pred EEEeCCccc---HHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcE
Q 039167 239 WVCVSDPFD---EFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSK 315 (923)
Q Consensus 239 wv~~s~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 315 (923)
.+..++... ..+..+.+.+...... ..++.-++++|++...+.+.-..+...+......+.
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~----------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESP----------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCC----------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 444443333 1222222222221110 035778999999976666666667777766667788
Q ss_pred EEEEecch-HHHHHh-cccceEeCCCCCh
Q 039167 316 ILITTRKE-AVARIM-GSTNIISVNVLSG 342 (923)
Q Consensus 316 iivTtR~~-~v~~~~-~~~~~~~l~~L~~ 342 (923)
+|++|... .+.... .....+++.+.+.
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~~~~ 170 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKPPSR 170 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCCchH
Confidence 88888742 332222 3355777776333
No 223
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.70 E-value=0.0055 Score=63.67 Aligned_cols=136 Identities=25% Similarity=0.249 Sum_probs=75.7
Q ss_pred ecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcC-cccccccceEE----EEEeCCccc-------
Q 039167 180 FGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNN-GDVEKNFEKRI----WVCVSDPFD------- 247 (923)
Q Consensus 180 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~~~----wv~~s~~~~------- 247 (923)
-+|..+..--.++|+.+ .+..|.+.|.+|.|||.||-+..=. ...+..|...+ -+.++++..
T Consensus 227 ~prn~eQ~~ALdlLld~------dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eE 300 (436)
T COG1875 227 RPRNAEQRVALDLLLDD------DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEE 300 (436)
T ss_pred CcccHHHHHHHHHhcCC------CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchh
Confidence 34666666777788654 7899999999999999998544221 12234444333 222333221
Q ss_pred --HHHHHHHHHHHHhCC-CCCCcCHHHHHHHHHH---------HhcCC---ceEEEecCCCCCChhhHHHhHHhhhcCCC
Q 039167 248 --EFRIARAIIEALTGC-LPNFVEFQSLMQHIQK---------HVAGK---KLLLVLDDVWNENFHKWEQFNNCLKNCLY 312 (923)
Q Consensus 248 --~~~~~~~i~~~l~~~-~~~~~~~~~~~~~l~~---------~l~~k---r~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 312 (923)
+.-..+.|...+..- ..+......+...+.+ +.+|+ +-+||+|..++-. -.+++..+...+.
T Consensus 301 eKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLT---pheikTiltR~G~ 377 (436)
T COG1875 301 EKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLT---PHELKTILTRAGE 377 (436)
T ss_pred hhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccC---HHHHHHHHHhccC
Confidence 111223333322210 0111112222222211 23444 4689999997643 4567777888899
Q ss_pred CcEEEEEecchH
Q 039167 313 GSKILITTRKEA 324 (923)
Q Consensus 313 gs~iivTtR~~~ 324 (923)
||||+.|---.+
T Consensus 378 GsKIVl~gd~aQ 389 (436)
T COG1875 378 GSKIVLTGDPAQ 389 (436)
T ss_pred CCEEEEcCCHHH
Confidence 999999976433
No 224
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.69 E-value=0.0044 Score=66.25 Aligned_cols=102 Identities=20% Similarity=0.240 Sum_probs=55.7
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCc
Q 039167 205 HIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKK 284 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 284 (923)
..+.++|..|+|||+||.++++. ....-..++++++. +++..+...-.. ...+.. .. .+.+. .-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~~------~l~~~l~~~~~~---~~~~~~---~~-~~~l~-~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTAD------ELIEILREIRFN---NDKELE---EV-YDLLI-NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEHH------HHHHHHHHHHhc---cchhHH---HH-HHHhc-cC
Confidence 56999999999999999999884 32222345666543 233333221110 011111 11 22222 23
Q ss_pred eEEEecCCCCCChhhHH--HhHHhhhcC-CCCcEEEEEecc
Q 039167 285 LLLVLDDVWNENFHKWE--QFNNCLKNC-LYGSKILITTRK 322 (923)
Q Consensus 285 ~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTtR~ 322 (923)
=||||||+.......|. .+...+... ..+-.+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 58999999665434443 344444322 234568888874
No 225
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.68 E-value=0.0032 Score=55.50 Aligned_cols=21 Identities=43% Similarity=0.524 Sum_probs=18.6
Q ss_pred EEEEecCCChHHHHHHHHhcC
Q 039167 207 ISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 207 i~I~G~gGiGKTtLa~~v~~~ 227 (923)
|-|+|++|+|||++|+.+..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998774
No 226
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.66 E-value=0.00015 Score=80.85 Aligned_cols=107 Identities=26% Similarity=0.319 Sum_probs=79.3
Q ss_pred ccccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCccccccccccccc-ccCCCCCcEEeccCCCCccccc
Q 039167 525 DNIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTN-IEKLLHLKYLNLANQMEIERLP 603 (923)
Q Consensus 525 ~~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~-i~~l~~L~~L~L~~~~~l~~lp 603 (923)
.++.-++.+++|+++.|++..+. .+..|++|+.|||++|+ +..+|.- ...+ +|..|+|++|. ++++-
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~-------L~~vp~l~~~gc-~L~~L~lrnN~-l~tL~ 248 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNC-------LRHVPQLSMVGC-KLQLLNLRNNA-LTTLR 248 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH---HHHhcccccccccccch-------hccccccchhhh-hheeeeecccH-HHhhh
Confidence 34566788899999999876643 57889999999999877 5556531 1223 38999999998 88887
Q ss_pred hhhhCCCCCcEEecCCCccccccC--ccccCCCCCCEEeCCCCc
Q 039167 604 ETLCELYNLEHLNVNCCVKLRELP--QGIGRLRKLMYLDNECTV 645 (923)
Q Consensus 604 ~~i~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~ 645 (923)
. |.+|.+|+.||++.|- +...- .-++.|..|+.|+|.+|.
T Consensus 249 g-ie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 249 G-IENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred h-HHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCc
Confidence 6 8899999999999875 43221 126778888999999884
No 227
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.66 E-value=0.028 Score=55.01 Aligned_cols=120 Identities=18% Similarity=0.145 Sum_probs=67.2
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeC--CcccHHHHHH------HHHHHHhCC-----CCCC-cCH
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVS--DPFDEFRIAR------AIIEALTGC-----LPNF-VEF 269 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s--~~~~~~~~~~------~i~~~l~~~-----~~~~-~~~ 269 (923)
-.+++|+|..|.|||||.+.+.... ......+++.-. ...+...... ++++.++.. .... ...
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 4589999999999999999998742 233444444211 1112222111 133443321 1111 122
Q ss_pred HHHHHHHHHHhcCCceEEEecCCCC-CChhhHHHhHHhhhcCC-C-CcEEEEEecchHHH
Q 039167 270 QSLMQHIQKHVAGKKLLLVLDDVWN-ENFHKWEQFNNCLKNCL-Y-GSKILITTRKEAVA 326 (923)
Q Consensus 270 ~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~-~-gs~iivTtR~~~v~ 326 (923)
+...-.+.+.+...+-++++|+.-. -+....+.+...+.... . |..||++|.+....
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 2333446667778889999998732 23344555555554322 2 66788888876654
No 228
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.66 E-value=0.042 Score=58.96 Aligned_cols=71 Identities=10% Similarity=0.065 Sum_probs=49.0
Q ss_pred CCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecchH-HHHHh-cccceEeCCCCChHHHHHHHHHh
Q 039167 282 GKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRKEA-VARIM-GSTNIISVNVLSGMECWLVFESL 352 (923)
Q Consensus 282 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 352 (923)
+++-++|+|++...+...-..+...+.....+..+|++|.+.+ +.... .....+.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 4444556788877676677777777765555666777777643 44332 34678999999999998888654
No 229
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.65 E-value=0.025 Score=60.80 Aligned_cols=104 Identities=12% Similarity=0.083 Sum_probs=54.6
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCccc--HHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHh
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFD--EFRIARAIIEALTGCLPNFVEFQSLMQHIQKHV 280 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 280 (923)
+.++|+++|++|+||||++..++.... ...+ .+..+.. +.+. ..+-++...+.++.......+...+.+.+...-
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~-~~Gk-kVglI~a-Dt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH-GKKK-TVGFITT-DHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH-HcCC-cEEEEec-CCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 468999999999999999998876321 1222 2334433 3332 222233333333322222234555555554443
Q ss_pred c-CCceEEEecCCCCCC--hhhHHHhHHhhhc
Q 039167 281 A-GKKLLLVLDDVWNEN--FHKWEQFNNCLKN 309 (923)
Q Consensus 281 ~-~kr~LlVlDdv~~~~--~~~~~~l~~~l~~ 309 (923)
. .+.=+|++|-..... ......+...+..
T Consensus 317 ~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~ 348 (436)
T PRK11889 317 EEARVDYILIDTAGKNYRASETVEEMIETMGQ 348 (436)
T ss_pred hccCCCEEEEeCccccCcCHHHHHHHHHHHhh
Confidence 2 134578888774432 2334555555543
No 230
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.64 E-value=0.0075 Score=67.47 Aligned_cols=188 Identities=16% Similarity=0.152 Sum_probs=109.2
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHH
Q 039167 178 EIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIE 257 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 257 (923)
+++|-+.-...|...+... .-...-...|+.|+||||+|+.+..-..-.. + ....++..-..-+.|-.
T Consensus 17 evvGQe~v~~~L~nal~~~-----ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 17 DVVGQEHVVKTLSNALENG-----RIAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEINE 84 (515)
T ss_pred HhcccHHHHHHHHHHHHhC-----cchhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhhc
Confidence 5799999999999988643 2345667789999999999988865211110 0 11111211111122211
Q ss_pred HHh-----CCCCCCcCHHHHHHHHHHHh----cCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecc-hHH-H
Q 039167 258 ALT-----GCLPNFVEFQSLMQHIQKHV----AGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRK-EAV-A 326 (923)
Q Consensus 258 ~l~-----~~~~~~~~~~~~~~~l~~~l----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v-~ 326 (923)
.-. .+......+++....+.+.. +++-=+.|+|.|.-.+...|..+...+......-+.|+.|.+ ..+ .
T Consensus 85 g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~ 164 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPN 164 (515)
T ss_pred CCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCch
Confidence 100 00011122333333222221 455668899999877778888888877666656666666655 333 2
Q ss_pred HHhcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChH
Q 039167 327 RIMGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPL 381 (923)
Q Consensus 327 ~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPL 381 (923)
.....+..|.++.++.++-...+...+-...-..+ .+...-|++..+|..-
T Consensus 165 TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e----~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 165 TILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE----EDALSLIARAAEGSLR 215 (515)
T ss_pred hhhhccccccccCCCHHHHHHHHHHHHHhcCCccC----HHHHHHHHHHcCCChh
Confidence 33456789999999999888888776643322222 2335566777777443
No 231
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.01 Score=66.93 Aligned_cols=58 Identities=21% Similarity=0.390 Sum_probs=44.7
Q ss_pred CCCceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCccccccc
Q 039167 175 DESEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNF 234 (923)
Q Consensus 175 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 234 (923)
-+++-+|.++-.++|.+++.-..-.+..+-+++..+|++|||||++|+.|+. .....|
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF 466 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF 466 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce
Confidence 3567899999999999988543222334678999999999999999999987 344444
No 232
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.57 E-value=0.015 Score=55.79 Aligned_cols=40 Identities=30% Similarity=0.374 Sum_probs=29.0
Q ss_pred EEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCccc
Q 039167 206 IISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFD 247 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 247 (923)
++.|+|.+|+||||++..+... ....-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 3689999999999999999773 322334567777665543
No 233
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.56 E-value=0.019 Score=55.71 Aligned_cols=118 Identities=16% Similarity=0.148 Sum_probs=63.3
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCC--cccHHHHHHHHHHHHhC--CCCC----------CcCH
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSD--PFDEFRIARAIIEALTG--CLPN----------FVEF 269 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~--~~~~~~~~~~i~~~l~~--~~~~----------~~~~ 269 (923)
-.+++|+|+.|.|||||.+.++.-. ......+++.-.. ....... ...++- ..+. ....
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCHH
Confidence 4589999999999999999998742 2233444332110 0011111 011110 0000 0111
Q ss_pred HHHHHHHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcCCCCcEEEEEecchHHHHH
Q 039167 270 QSLMQHIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNCLYGSKILITTRKEAVARI 328 (923)
Q Consensus 270 ~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 328 (923)
+...-.+.+.+..++-++++|+-... +....+.+...+.....+..||++|.+......
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 12223355666778889999987432 333445555555443345678888888766543
No 234
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.54 E-value=0.028 Score=54.88 Aligned_cols=118 Identities=14% Similarity=0.056 Sum_probs=63.0
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhC--CC------------CCCcC-
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTG--CL------------PNFVE- 268 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~--~~------------~~~~~- 268 (923)
-.+++|+|..|.|||||++.+..... .....+++.-. +.......+-..++- +. ...-+
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 35899999999999999999987422 12233333211 111110111111110 00 11111
Q ss_pred HHHHHHHHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcCCCCcEEEEEecchHHHH
Q 039167 269 FQSLMQHIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNCLYGSKILITTRKEAVAR 327 (923)
Q Consensus 269 ~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 327 (923)
.+...-.+.+.+-.++-++++|+.... +....+.+...+.....+..||++|.+.....
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 122233456667778889999987432 33344445555543334677888988876654
No 235
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.52 E-value=0.034 Score=57.30 Aligned_cols=172 Identities=17% Similarity=0.184 Sum_probs=92.3
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcC-cccccccceEEEEEeCCcccH-HHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNN-GDVEKNFEKRIWVCVSDPFDE-FRIARA 254 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~~~wv~~s~~~~~-~~~~~~ 254 (923)
..++|-.++..++-.++....- .+...-|.|+|+.|.|||+|...+..+ .+...+ .+-|........ .-.++.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~---~l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSDIQENGEN---FLLVRLNGELQTDKIALKG 98 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCe---EEEEEECccchhhHHHHHH
Confidence 3588988888888887754321 223456788999999999999888775 122333 334444443322 223444
Q ss_pred HHHHHhC----CCCCCcCHHHHHHHHHHHhc------CCceEEEecCCCCCCh-hhHHHhHHhhh----cCCCCcEEEEE
Q 039167 255 IIEALTG----CLPNFVEFQSLMQHIQKHVA------GKKLLLVLDDVWNENF-HKWEQFNNCLK----NCLYGSKILIT 319 (923)
Q Consensus 255 i~~~l~~----~~~~~~~~~~~~~~l~~~l~------~kr~LlVlDdv~~~~~-~~~~~l~~~l~----~~~~gs~iivT 319 (923)
|..++.. ......+..+....+-+.|+ +-++..|+|.+.-.-. ..-..+...+. ...+=+-|-+|
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 5555442 21111222222333333332 3368888887632211 11112333332 12345667889
Q ss_pred ecchH-------HHHHhcccceEeCCCCChHHHHHHHHHhh
Q 039167 320 TRKEA-------VARIMGSTNIISVNVLSGMECWLVFESLA 353 (923)
Q Consensus 320 tR~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~a 353 (923)
||-.- |-..+....++-+++++-++...++++..
T Consensus 179 trld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 98532 22222223356667777777777777654
No 236
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.51 E-value=0.15 Score=55.26 Aligned_cols=204 Identities=12% Similarity=0.104 Sum_probs=118.5
Q ss_pred chhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHH-HHHhcCcccccccceEEEEEeCC---cccHHHHHHHHHH
Q 039167 182 RKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLA-QFAYNNGDVEKNFEKRIWVCVSD---PFDEFRIARAIIE 257 (923)
Q Consensus 182 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~~wv~~s~---~~~~~~~~~~i~~ 257 (923)
|.+..++|..||.... -..|.|.||-|.||+.|+ .++..+.+. +..+++.+ ..+-..+++.++.
T Consensus 1 R~e~~~~L~~wL~e~~------~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP------NTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCC------CeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHH
Confidence 5678899999997653 469999999999999999 777775322 34444322 1223344444444
Q ss_pred HHh-----------------------CCCCCC-cCH-HHHHHH-------HHH-------------------Hh---cCC
Q 039167 258 ALT-----------------------GCLPNF-VEF-QSLMQH-------IQK-------------------HV---AGK 283 (923)
Q Consensus 258 ~l~-----------------------~~~~~~-~~~-~~~~~~-------l~~-------------------~l---~~k 283 (923)
++| +...+. ... .++.+. |++ +| -.+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 443 111111 111 122111 111 01 123
Q ss_pred ceEEEecCCCCCC---hhhHHHhHHhhh--cCCCCcEEEEEecchHHHH----Hhc--ccceEeCCCCChHHHHHHHHHh
Q 039167 284 KLLLVLDDVWNEN---FHKWEQFNNCLK--NCLYGSKILITTRKEAVAR----IMG--STNIISVNVLSGMECWLVFESL 352 (923)
Q Consensus 284 r~LlVlDdv~~~~---~~~~~~l~~~l~--~~~~gs~iivTtR~~~v~~----~~~--~~~~~~l~~L~~~~~~~lf~~~ 352 (923)
|-+||+|+.-... ..-|+.+...-. ...+=.+||++|-+....+ .+. ....+.|...+.+.|..+...+
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 7899999984421 122333322111 1123457899888754443 332 2468899999999999999887
Q ss_pred hcCCCCc------------cch----hhHHHHHHHHHHhcCCChHHHHHHHHHHccCCCHH
Q 039167 353 AFVGKSM------------EER----ENLEKIGREITRKCKGLPLATKTIASLLRSKNTEK 397 (923)
Q Consensus 353 a~~~~~~------------~~~----~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~ 397 (923)
.-..... ... ....+-....++..||=-.-+..+++.++...+++
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 6432110 000 12333356678889999999999999998876554
No 237
>PRK13695 putative NTPase; Provisional
Probab=96.49 E-value=0.0044 Score=60.34 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHhcC
Q 039167 206 IISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
-|+|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998774
No 238
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.49 E-value=0.0083 Score=61.88 Aligned_cols=82 Identities=24% Similarity=0.279 Sum_probs=48.5
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAG 282 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 282 (923)
...-+.++|.+|+|||.||.++.+. +...=-.+.++++ .++...+...... ......+.+.+ .
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~~------~el~~~Lk~~~~~--------~~~~~~l~~~l-~ 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFITA------PDLLSKLKAAFDE--------GRLEEKLLREL-K 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEEH------HHHHHHHHHHHhc--------CchHHHHHHHh-h
Confidence 4456899999999999999999995 3322224455544 3444555444332 11111222222 2
Q ss_pred CceEEEecCCCCCChhhHH
Q 039167 283 KKLLLVLDDVWNENFHKWE 301 (923)
Q Consensus 283 kr~LlVlDdv~~~~~~~~~ 301 (923)
+-=||||||+.......|.
T Consensus 167 ~~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 167 KVDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred cCCEEEEecccCccCCHHH
Confidence 3458999999765555554
No 239
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.49 E-value=0.035 Score=51.96 Aligned_cols=106 Identities=18% Similarity=0.189 Sum_probs=60.8
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAG 282 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 282 (923)
.-.+++|+|..|.|||||++.+..... .....+|+..... ++- .+.....+...-.+.+.+..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~~-------------i~~-~~~lS~G~~~rv~laral~~ 87 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTVK-------------IGY-FEQLSGGEKMRLALAKLLLE 87 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeEE-------------EEE-EccCCHHHHHHHHHHHHHhc
Confidence 346899999999999999999987422 2233444321000 000 00011122223345666677
Q ss_pred CceEEEecCCCC-CChhhHHHhHHhhhcCCCCcEEEEEecchHHHH
Q 039167 283 KKLLLVLDDVWN-ENFHKWEQFNNCLKNCLYGSKILITTRKEAVAR 327 (923)
Q Consensus 283 kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 327 (923)
++-++++|+.-. -+....+.+...+... +..||++|.+.+...
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 788999998732 2344555566666543 346888888765543
No 240
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.48 E-value=0.016 Score=66.90 Aligned_cols=43 Identities=28% Similarity=0.475 Sum_probs=35.5
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhc
Q 039167 178 EIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
+++|.+..++.+...+... ...-+.|+|+.|+|||++|+.+++
T Consensus 66 ~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHH
Confidence 5899999999998776432 344678999999999999999976
No 241
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.45 E-value=0.041 Score=52.98 Aligned_cols=117 Identities=13% Similarity=0.048 Sum_probs=63.0
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCcccccccceEEEE-------EeCCcccHHHHHHHHHHHHhC-CCCCCcCHHHHHHH
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWV-------CVSDPFDEFRIARAIIEALTG-CLPNFVEFQSLMQH 275 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv-------~~s~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~~~ 275 (923)
-.+++|+|..|.|||||++.+...... ....+++ .+.+..... ...+.+.+.. ........+...-.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~~~~~i~~~~q~~~~~--~~tv~~nl~~~~~~~LS~G~~~rv~ 101 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPW---GSGRIGMPEGEDLLFLPQRPYLP--LGTLREQLIYPWDDVLSGGEQQRLA 101 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCCceEEEECCCCccc--cccHHHHhhccCCCCCCHHHHHHHH
Confidence 458999999999999999999874221 1121211 122222111 0122222221 11122223333445
Q ss_pred HHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcCCCCcEEEEEecchHHHH
Q 039167 276 IQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNCLYGSKILITTRKEAVAR 327 (923)
Q Consensus 276 l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 327 (923)
+.+.+-.++-++++|+--.. +......+...+... +..||++|.+.....
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 66677778888999976321 233444455555443 456888888866543
No 242
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.44 E-value=0.089 Score=52.20 Aligned_cols=156 Identities=14% Similarity=0.159 Sum_probs=85.8
Q ss_pred CceecchhhHHH---HHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHH
Q 039167 177 SEIFGRKDEKNE---LVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIAR 253 (923)
Q Consensus 177 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 253 (923)
.+++|.++...+ |++.|..++.-++-.++-|..+|++|.|||.+|+++.+. .+..| +.+. ..+
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane--~kvp~-----l~vk-------at~ 186 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANE--AKVPL-----LLVK-------ATE 186 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcc--cCCce-----EEec-------hHH
Confidence 458898776643 566665543323457889999999999999999999994 33333 1111 111
Q ss_pred HHHHHHhCCCCCCcCHHHHHHHHHH-HhcCCceEEEecCCCCC-----------C-hhhHHHhHHhhh--cCCCCcEEEE
Q 039167 254 AIIEALTGCLPNFVEFQSLMQHIQK-HVAGKKLLLVLDDVWNE-----------N-FHKWEQFNNCLK--NCLYGSKILI 318 (923)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~-----------~-~~~~~~l~~~l~--~~~~gs~iiv 318 (923)
-|-+.++ +.......+.+ .-+.-++++.+|.+... + ++....+..-+. ..+.|-..|-
T Consensus 187 liGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 187 LIGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred HHHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 1111111 11112222222 22456899999977321 0 011112222222 1235766666
Q ss_pred EecchHHHHHh-c--ccceEeCCCCChHHHHHHHHHhh
Q 039167 319 TTRKEAVARIM-G--STNIISVNVLSGMECWLVFESLA 353 (923)
Q Consensus 319 TtR~~~v~~~~-~--~~~~~~l~~L~~~~~~~lf~~~a 353 (923)
.|.+.+..... . -..-++...-+++|-.+++...+
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~ 297 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYA 297 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHH
Confidence 67665544322 1 13466667778888888887766
No 243
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.42 E-value=0.0086 Score=60.38 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=36.0
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHH
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIAR 253 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 253 (923)
.-.++-|+|++|+|||++|.++... ....-..++|++... ++...+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 4679999999999999999888763 333446788998875 55555443
No 244
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.41 E-value=0.0024 Score=57.91 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=20.3
Q ss_pred EEEEEecCCChHHHHHHHHhcC
Q 039167 206 IISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
+|+|.|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999883
No 245
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.41 E-value=0.16 Score=55.10 Aligned_cols=75 Identities=15% Similarity=0.213 Sum_probs=45.4
Q ss_pred hhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccc--ccc---ceEEEEEeCCcccHHHHHHHHHH
Q 039167 183 KDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVE--KNF---EKRIWVCVSDPFDEFRIARAIIE 257 (923)
Q Consensus 183 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F---~~~~wv~~s~~~~~~~~~~~i~~ 257 (923)
+.-.+.+.+.+...+ .....+|+|.|.=|+||||+.+.+.+..+-. ..+ ..-+|-......-...++..|..
T Consensus 2 ~~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~ 78 (325)
T PF07693_consen 2 KPYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFD 78 (325)
T ss_pred hHHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHH
Confidence 344566777776542 2478899999999999999999997743222 112 12234444333334455555555
Q ss_pred HHh
Q 039167 258 ALT 260 (923)
Q Consensus 258 ~l~ 260 (923)
++.
T Consensus 79 ~l~ 81 (325)
T PF07693_consen 79 QLE 81 (325)
T ss_pred HHH
Confidence 553
No 246
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.39 E-value=0.0046 Score=57.53 Aligned_cols=108 Identities=15% Similarity=0.149 Sum_probs=63.4
Q ss_pred ecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCccc-ccccceEEEEEeCCcccHHHHHHHHHHH
Q 039167 180 FGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDV-EKNFEKRIWVCVSDPFDEFRIARAIIEA 258 (923)
Q Consensus 180 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 258 (923)
||.-..++++.+.+..-. .....|.|+|..|+||+++|+.++..... ...|... .... ..
T Consensus 1 vG~S~~~~~l~~~l~~~a----~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~-~~----------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA----KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCAS-LP----------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHH----CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHC-TC-----------
T ss_pred CCCCHHHHHHHHHHHHHh----CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhh-Cc-----------
Confidence 466666777766664432 24456899999999999999999884222 1122110 0000 00
Q ss_pred HhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcC-CCCcEEEEEecch
Q 039167 259 LTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNC-LYGSKILITTRKE 323 (923)
Q Consensus 259 l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTtR~~ 323 (923)
.+.+.+ .+.--|+|+|+..-+.+....+...+... ....|+|.||+..
T Consensus 62 --------------~~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 62 --------------AELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp --------------HHHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred --------------HHHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 111111 25566889999776666677777777654 5678999999853
No 247
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.39 E-value=0.0078 Score=59.83 Aligned_cols=112 Identities=14% Similarity=0.212 Sum_probs=61.0
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHH-HHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCC
Q 039167 205 HIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEF-RIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGK 283 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 283 (923)
.+|.|+|+.|.||||++..+... ........++. +.++.... .-...+..+ ..-..+.....+.++..++..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t-~e~~~E~~~~~~~~~i~q----~~vg~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILT-IEDPIEFVHESKRSLINQ----REVGLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEE-EcCCccccccCccceeee----cccCCCccCHHHHHHHHhcCC
Confidence 47899999999999999987763 33233334443 22221100 000001100 000112233455677778777
Q ss_pred ceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecchHHHHH
Q 039167 284 KLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRKEAVARI 328 (923)
Q Consensus 284 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 328 (923)
.=.|++|++-+ .+.+..+.... ..|..++.|+...++...
T Consensus 75 pd~ii~gEird--~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~~ 114 (198)
T cd01131 75 PDVILVGEMRD--LETIRLALTAA---ETGHLVMSTLHTNSAAKT 114 (198)
T ss_pred cCEEEEcCCCC--HHHHHHHHHHH---HcCCEEEEEecCCcHHHH
Confidence 88999999943 23333333322 346668888887665543
No 248
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.36 E-value=0.02 Score=68.30 Aligned_cols=123 Identities=17% Similarity=0.272 Sum_probs=70.7
Q ss_pred CceecchhhHHHHHHHHhcCCC---CCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENS---IEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIAR 253 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 253 (923)
..++|.++.++.+.+.+..... ........+.++|+.|+|||++|+.+... ... ..+.++++.-....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~~---~~i~id~se~~~~~---- 528 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LGI---ELLRFDMSEYMERH---- 528 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hCC---CcEEeechhhcccc----
Confidence 3589999999998888763210 01223467899999999999999999873 222 23344444322211
Q ss_pred HHHHHHhCCCCCCcCHHHHHHHHHHHhcCC-ceEEEecCCCCCChhhHHHhHHhhhcC
Q 039167 254 AIIEALTGCLPNFVEFQSLMQHIQKHVAGK-KLLLVLDDVWNENFHKWEQFNNCLKNC 310 (923)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~~ 310 (923)
.+ ..+.+..+.....+ ....+.+.++.+ .-+|+||++...+.+.+..+...+..+
T Consensus 529 ~~-~~LiG~~~gyvg~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G 584 (758)
T PRK11034 529 TV-SRLIGAPPGYVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNG 584 (758)
T ss_pred cH-HHHcCCCCCccccc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcC
Confidence 11 22222222211111 112233334333 459999999777777777777776543
No 249
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.36 E-value=0.02 Score=54.92 Aligned_cols=149 Identities=13% Similarity=0.198 Sum_probs=76.4
Q ss_pred EEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcC--Cc
Q 039167 207 ISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAG--KK 284 (923)
Q Consensus 207 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~--kr 284 (923)
+.|.|..|+|||++|.++... ....++++.-...++.+ +.+.|....... +......+....+.+.+.. +.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R-~~~w~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRR-PAHWRTIETPRDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhC-CCCceEeecHHHHHHHHHhcCCC
Confidence 678999999999999988752 22356677666666543 444444332222 2222222223334444421 23
Q ss_pred eEEEecCC--CC-----CCh--------hhHHHhHHhhhcCCCCcEEEEEecchHHHHHhcccceEeCCCCChHHHHHHH
Q 039167 285 LLLVLDDV--WN-----ENF--------HKWEQFNNCLKNCLYGSKILITTRKEAVARIMGSTNIISVNVLSGMECWLVF 349 (923)
Q Consensus 285 ~LlVlDdv--~~-----~~~--------~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~~~~~lf 349 (923)
-.+++|.+ |- ... ..+..+...+. ..+..+|++|.. | -.+..+.+..-..|
T Consensus 75 ~~VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~--~~~~~~viVsnE--v----------G~g~vp~~~~~r~f 140 (169)
T cd00544 75 DVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVR--NKPGTLILVSNE--V----------GLGVVPENALGRRF 140 (169)
T ss_pred CEEEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHH--cCCCcEEEEECC--c----------CCCCCCCCHHHHHH
Confidence 47999986 11 100 11122223332 235556666642 2 12334455666666
Q ss_pred HHhhcCCCCccchhhHHHHHHHHHHhcCCChH
Q 039167 350 ESLAFVGKSMEERENLEKIGREITRKCKGLPL 381 (923)
Q Consensus 350 ~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPL 381 (923)
....+ .....+...+.+++....|+|+
T Consensus 141 ~d~lG-----~lnq~la~~ad~v~~vv~Gip~ 167 (169)
T cd00544 141 RDELG-----RLNQRLAALADEVYLVVSGIPL 167 (169)
T ss_pred HHHHH-----HHHHHHHHHCCEEEEEECCcce
Confidence 66543 2234444455555555577775
No 250
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.33 E-value=0.0019 Score=60.29 Aligned_cols=89 Identities=26% Similarity=0.241 Sum_probs=49.1
Q ss_pred EEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceE
Q 039167 207 ISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLL 286 (923)
Q Consensus 207 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~L 286 (923)
|.++|++|+|||+||+.++.. ... ...-+.++...+..++....--. ... ... ....+...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~~---~~~~i~~~~~~~~~dl~g~~~~~-~~~-~~~-~~~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LGR---PVIRINCSSDTTEEDLIGSYDPS-NGQ-FEF-KDGPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HTC---EEEEEE-TTTSTHHHHHCEEET--TTT-TCE-EE-CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hhc---ceEEEEeccccccccceeeeeec-ccc-ccc-ccccccccc-----cceeE
Confidence 678999999999999999883 211 23345677777766654332111 000 000 000000000 17899
Q ss_pred EEecCCCCCChhhHHHhHHhhh
Q 039167 287 LVLDDVWNENFHKWEQFNNCLK 308 (923)
Q Consensus 287 lVlDdv~~~~~~~~~~l~~~l~ 308 (923)
+|||++...+...+..+...+.
T Consensus 69 l~lDEin~a~~~v~~~L~~ll~ 90 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLLE 90 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHHS
T ss_pred EEECCcccCCHHHHHHHHHHHh
Confidence 9999996555555666666654
No 251
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.33 E-value=0.014 Score=56.10 Aligned_cols=130 Identities=18% Similarity=0.134 Sum_probs=67.1
Q ss_pred eecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHH
Q 039167 179 IFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEA 258 (923)
Q Consensus 179 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 258 (923)
++|....+.++++.+..-.. ....|.|+|..|+||+.+|+.+++... ..-..-+-|+++. .+.+.+ -.+
T Consensus 1 liG~s~~m~~~~~~~~~~a~----~~~pVlI~GE~GtGK~~lA~~IH~~s~--r~~~pfi~vnc~~-~~~~~~----e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----SDLPVLITGETGTGKELLARAIHNNSP--RKNGPFISVNCAA-LPEELL----ESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----STS-EEEECSTTSSHHHHHHHHHHCST--TTTS-EEEEETTT-S-HHHH----HHH
T ss_pred CEeCCHHHHHHHHHHHHHhC----CCCCEEEEcCCCCcHHHHHHHHHHhhh--cccCCeEEEehhh-hhcchh----hhh
Confidence 46778888888887755432 235677999999999999999998421 1111223333332 222222 233
Q ss_pred HhCCCCCC-cCHH-HHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcC------C-----CCcEEEEEecc
Q 039167 259 LTGCLPNF-VEFQ-SLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNC------L-----YGSKILITTRK 322 (923)
Q Consensus 259 l~~~~~~~-~~~~-~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~------~-----~gs~iivTtR~ 322 (923)
+.+..... .+.. .....+. ....=-|+||+|.......-..+...+..+ + ...|||.||..
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~---~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLE---QANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHH---HTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred hhccccccccccccccCCcee---eccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 33321110 0000 0001111 224456889999776655555666666532 1 15688888875
No 252
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.32 E-value=0.027 Score=68.18 Aligned_cols=178 Identities=16% Similarity=0.129 Sum_probs=90.7
Q ss_pred ceecchhhHHHHHHHHhcCCC-------CCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHH
Q 039167 178 EIFGRKDEKNELVDRLICENS-------IEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFR 250 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 250 (923)
++.|.+..++++.+++...-. ..-...+-+.++|++|+|||+||+.+++. ....| +.++.+ .
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~---i~i~~~------~ 247 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF---ISINGP------E 247 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE---EEEecH------H
Confidence 478999999888777642100 01123456889999999999999999883 32222 222211 1
Q ss_pred HHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCC-----------hhhHHHhHHhhhcC-CCCcEEEE
Q 039167 251 IARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNEN-----------FHKWEQFNNCLKNC-LYGSKILI 318 (923)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~~-~~gs~iiv 318 (923)
+. ... . ......+...+.........+|+||++.... ......+...+... ..+..++|
T Consensus 248 i~----~~~----~-g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI 318 (733)
T TIGR01243 248 IM----SKY----Y-GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVI 318 (733)
T ss_pred Hh----ccc----c-cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEE
Confidence 10 000 0 0111222333334445567899999983210 01122333333322 22334444
Q ss_pred -EecchH-HHHHh---cc-cceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCCh
Q 039167 319 -TTRKEA-VARIM---GS-TNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLP 380 (923)
Q Consensus 319 -TtR~~~-v~~~~---~~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlP 380 (923)
||.... +...+ +. ...+.+...+.++-.+++....-... ..... ....+++.+.|.-
T Consensus 319 ~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~-l~~d~----~l~~la~~t~G~~ 381 (733)
T TIGR01243 319 GATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMP-LAEDV----DLDKLAEVTHGFV 381 (733)
T ss_pred eecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCC-Ccccc----CHHHHHHhCCCCC
Confidence 444322 21111 11 34677888888888888875432111 11111 1456777777754
No 253
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.32 E-value=0.041 Score=53.29 Aligned_cols=103 Identities=14% Similarity=0.050 Sum_probs=58.9
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEE------eCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHH
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVC------VSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQ 277 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~------~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 277 (923)
-.+++|+|+.|+|||||.+.+..-.. .....+++. +.+... ....+...-.+.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~la 83 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIA 83 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHH
Confidence 35899999999999999999987321 222333321 111111 111223334466
Q ss_pred HHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcC-CC-CcEEEEEecchHHHH
Q 039167 278 KHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNC-LY-GSKILITTRKEAVAR 327 (923)
Q Consensus 278 ~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~-gs~iivTtR~~~v~~ 327 (923)
+.+..++-++++|+.-.. +....+.+...+... .. +.-||++|.+.....
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 667778889999987322 233334444444322 12 356888888765544
No 254
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.32 E-value=0.0095 Score=57.29 Aligned_cols=152 Identities=17% Similarity=0.230 Sum_probs=73.8
Q ss_pred EEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcC---HHHHHHHHHHHhcC
Q 039167 206 IISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVE---FQSLMQHIQKHVAG 282 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~---~~~~~~~l~~~l~~ 282 (923)
++.|.|.+|+||||+|..+... ... ..+++.-...++ .+..+.|............. ...+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~--~~~---~~~~iat~~~~~-~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ--SGL---QVLYIATAQPFD-DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH--cCC---CcEeCcCCCCCh-HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 6899999999999999988763 111 233443333333 34445554443332221111 12233344433332
Q ss_pred CceEEEecCC--CCC-----Ch-hhHH----HhHHhhhcCCCCcEEEEEecchHHHHHhcccceEeCCCCChHHHHHHHH
Q 039167 283 KKLLLVLDDV--WNE-----NF-HKWE----QFNNCLKNCLYGSKILITTRKEAVARIMGSTNIISVNVLSGMECWLVFE 350 (923)
Q Consensus 283 kr~LlVlDdv--~~~-----~~-~~~~----~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~~~~~lf~ 350 (923)
.-++++|.+ |-. +. +.|. .+...+. ..+..+|+|+..- -.+..+.++.-..|.
T Consensus 77 -~~~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~--~~~~tvVlVs~Ev------------g~g~vp~~~~~r~~~ 141 (170)
T PRK05800 77 -GRCVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQ--QLPAKIILVTNEV------------GMGIVPEYRLGRHFR 141 (170)
T ss_pred -CCEEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHH--cCCCCEEEEEcCC------------cccccCCCHHHHHHH
Confidence 337899987 210 10 1122 2222222 2354566666421 122334445555665
Q ss_pred HhhcCCCCccchhhHHHHHHHHHHhcCCChHHH
Q 039167 351 SLAFVGKSMEERENLEKIGREITRKCKGLPLAT 383 (923)
Q Consensus 351 ~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 383 (923)
...+ ...+.+...+.++.....|+|+-+
T Consensus 142 d~lG-----~lnq~la~~ad~V~~v~~Gi~~~l 169 (170)
T PRK05800 142 DIAG-----RLNQQLAAAADEVYLVVAGLPLKL 169 (170)
T ss_pred HHHH-----HHHHHHHHHCCEEEEEeCCCcEec
Confidence 5442 223344444555555557777644
No 255
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.29 E-value=0.011 Score=60.34 Aligned_cols=46 Identities=24% Similarity=0.231 Sum_probs=34.5
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHH
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRI 251 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 251 (923)
.-.++.|+|.+|+|||++|.++... ....-..++|++.. .++...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 4679999999999999999888763 32334678899877 5555443
No 256
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.26 E-value=0.02 Score=56.52 Aligned_cols=88 Identities=18% Similarity=0.151 Sum_probs=51.0
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeC-CcccHHHHHHHHHHHHhCCC---CCCcCHHHHH-HHHHH
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVS-DPFDEFRIARAIIEALTGCL---PNFVEFQSLM-QHIQK 278 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~-~~l~~ 278 (923)
++++.++|+.|+||||.+.+++.... ..-..+..++.. ......+-++..++.++... ....+..+.. +.+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~--~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLK--LKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHh--hccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 47999999999999999877766322 223345566643 23355666777777777532 2222333333 33443
Q ss_pred HhcCCceEEEecCCC
Q 039167 279 HVAGKKLLLVLDDVW 293 (923)
Q Consensus 279 ~l~~kr~LlVlDdv~ 293 (923)
.-..+.=+|++|=..
T Consensus 79 ~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHTTSSEEEEEE-S
T ss_pred HhhcCCCEEEEecCC
Confidence 333344588888653
No 257
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.23 E-value=0.017 Score=60.89 Aligned_cols=86 Identities=20% Similarity=0.188 Sum_probs=44.7
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccc-cccceEEEEEeCCccc--HHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHH
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVE-KNFEKRIWVCVSDPFD--EFRIARAIIEALTGCLPNFVEFQSLMQHIQKH 279 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 279 (923)
..++++|+|+.|+||||++..+......+ +.+ .+..++.. .+. ....+....+.++.......+...+...+.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~D-~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~ 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALITTD-TYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEECC-ccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc
Confidence 46799999999999999998887632222 112 34444432 222 22222233333333222223444444444433
Q ss_pred hcCCceEEEecCC
Q 039167 280 VAGKKLLLVLDDV 292 (923)
Q Consensus 280 l~~kr~LlVlDdv 292 (923)
.+ .=+|++|..
T Consensus 271 -~~-~d~vliDt~ 281 (282)
T TIGR03499 271 -RD-KDLILIDTA 281 (282)
T ss_pred -cC-CCEEEEeCC
Confidence 32 457777753
No 258
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.22 E-value=0.0052 Score=58.47 Aligned_cols=105 Identities=25% Similarity=0.283 Sum_probs=74.9
Q ss_pred CCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCcccccccccccEEeEeCCCC--CCCCCCC
Q 039167 714 NLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRN--CEHLPPL 791 (923)
Q Consensus 714 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~--~~~l~~l 791 (923)
....++++.|. ...++.+..+++|..|.+.+|.++. +.|..-..+++|..|.|.+|.. +.++.++
T Consensus 43 ~~d~iDLtdNd-----------l~~l~~lp~l~rL~tLll~nNrIt~--I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pL 109 (233)
T KOG1644|consen 43 QFDAIDLTDND-----------LRKLDNLPHLPRLHTLLLNNNRITR--IDPDLDTFLPNLKTLILTNNSIQELGDLDPL 109 (233)
T ss_pred ccceecccccc-----------hhhcccCCCccccceEEecCCccee--eccchhhhccccceEEecCcchhhhhhcchh
Confidence 34455666554 3456677888999999999999888 7566555789999999999975 4567789
Q ss_pred CCCCCccceeccCCcCceEeCccccCCCCCCCCcccccCcccceeeccc
Q 039167 792 GKLPSLESLYIAGMKSVKRVGNEFLGVESDMDGSSVIAFAKLKKLTFYI 840 (923)
Q Consensus 792 ~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~ 840 (923)
..+|.|++|.+-+|+--..-.-..+- .-.+|+|+.|++..
T Consensus 110 a~~p~L~~Ltll~Npv~~k~~YR~yv---------l~klp~l~~LDF~k 149 (233)
T KOG1644|consen 110 ASCPKLEYLTLLGNPVEHKKNYRLYV---------LYKLPSLRTLDFQK 149 (233)
T ss_pred ccCCccceeeecCCchhcccCceeEE---------EEecCcceEeehhh
Confidence 99999999999998832222222111 12577888887773
No 259
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.21 E-value=0.026 Score=61.43 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=21.4
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
...++.++|++|+||||++..+..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998876
No 260
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.21 E-value=0.059 Score=54.53 Aligned_cols=123 Identities=18% Similarity=0.169 Sum_probs=66.7
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcc-----cc------ccc---ceEEEEEe----CCcc--cH----------------
Q 039167 205 HIISLVGMGGIGKTTLAQFAYNNGD-----VE------KNF---EKRIWVCV----SDPF--DE---------------- 248 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~-----~~------~~F---~~~~wv~~----s~~~--~~---------------- 248 (923)
..++|+|+.|.|||||.+.+..-.. +. ..+ ..+.||.= ...| ++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 6899999999999999999976211 10 001 12344431 1111 11
Q ss_pred ------HHHHHHHHHHHhCCC-----CCCcC-HHHHHHHHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcC-CCCc
Q 039167 249 ------FRIARAIIEALTGCL-----PNFVE-FQSLMQHIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNC-LYGS 314 (923)
Q Consensus 249 ------~~~~~~i~~~l~~~~-----~~~~~-~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs 314 (923)
.+.....++.++... -..-+ .+...-.|.+.|..+.=|++||.--.. |...-..+...+..- ..|.
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~ 190 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK 190 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 133344444444321 11122 233334567888999999999964221 223333344444322 2288
Q ss_pred EEEEEecchHHHH
Q 039167 315 KILITTRKEAVAR 327 (923)
Q Consensus 315 ~iivTtR~~~v~~ 327 (923)
-||++|.+-+...
T Consensus 191 tIl~vtHDL~~v~ 203 (254)
T COG1121 191 TVLMVTHDLGLVM 203 (254)
T ss_pred EEEEEeCCcHHhH
Confidence 8999999855443
No 261
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.084 Score=54.13 Aligned_cols=79 Identities=19% Similarity=0.272 Sum_probs=46.3
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCcc--cccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhc
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGD--VEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVA 281 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~--~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (923)
-++|.++|++|.|||+|.+++++... ..+.|....-+.++.. .++..-..+ ...-+..+-+.|++.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----sLFSKWFsE------SgKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----SLFSKWFSE------SGKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----HHHHHHHhh------hhhHHHHHHHHHHHHHh
Confidence 47899999999999999999998643 3455555555544321 111111111 11123344455556665
Q ss_pred CCc--eEEEecCC
Q 039167 282 GKK--LLLVLDDV 292 (923)
Q Consensus 282 ~kr--~LlVlDdv 292 (923)
++. +.+.+|.|
T Consensus 247 d~~~lVfvLIDEV 259 (423)
T KOG0744|consen 247 DRGNLVFVLIDEV 259 (423)
T ss_pred CCCcEEEEEeHHH
Confidence 444 55677888
No 262
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.19 E-value=0.018 Score=58.85 Aligned_cols=87 Identities=17% Similarity=0.145 Sum_probs=52.6
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCccccccc------ceEEEEEeCCcccHHHHHHHHHHHHhCCC---------CCCc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNF------EKRIWVCVSDPFDEFRIARAIIEALTGCL---------PNFV 267 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~~s~~~~~~~~~~~i~~~l~~~~---------~~~~ 267 (923)
.-.++.|+|.+|+|||+||.++... ....- ..++|+.....++...+. .+.+...... ....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCC
Confidence 4679999999999999999888653 22222 467899887777765543 3333322110 1113
Q ss_pred CHHHHHHHHHHHhc----CCceEEEecCC
Q 039167 268 EFQSLMQHIQKHVA----GKKLLLVLDDV 292 (923)
Q Consensus 268 ~~~~~~~~l~~~l~----~kr~LlVlDdv 292 (923)
+.++....+.+... .+.-++|+|.+
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsi 123 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSV 123 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCc
Confidence 34444444444432 34458888887
No 263
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.14 E-value=0.033 Score=54.09 Aligned_cols=117 Identities=15% Similarity=0.187 Sum_probs=61.9
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCC--cccHHHHHHHHHHHHhC--CCCC----------CcCH
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSD--PFDEFRIARAIIEALTG--CLPN----------FVEF 269 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~--~~~~~~~~~~i~~~l~~--~~~~----------~~~~ 269 (923)
-.+++|+|..|.|||||.+.+.... ......+++.-.. ....... ...++- +.+. ....
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~q~~~~~~~tv~~~lLS~G 100 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNEL----GDHVGYLPQDDELFSGSIAENILSGG 100 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEcccCCHHHH----HhheEEECCCCccccCcHHHHCcCHH
Confidence 3589999999999999999998732 2223333332110 0111111 111110 0000 0111
Q ss_pred HHHHHHHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcC-CCCcEEEEEecchHHHH
Q 039167 270 QSLMQHIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNC-LYGSKILITTRKEAVAR 327 (923)
Q Consensus 270 ~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~ 327 (923)
+...-.+.+.+..++-++++|+.-.. +......+...+... ..|..||++|.+.....
T Consensus 101 ~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 101 QRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 22233455666777789999987432 333344454544332 23667888888876654
No 264
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.13 E-value=0.031 Score=53.67 Aligned_cols=116 Identities=17% Similarity=0.158 Sum_probs=64.4
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCC--cccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhc
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSD--PFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVA 281 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (923)
-.+++|+|..|.|||||.+.+.... ......+++.-.. ..+..+..+ ..++. ...-...+...-.+.+.+-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~-~~qLS~G~~qrl~laral~ 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAM-VYQLSVGERQMVEIARALA 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEE-EEecCHHHHHHHHHHHHHh
Confidence 3589999999999999999998742 2334555543211 111111110 01110 0111222333344666777
Q ss_pred CCceEEEecCCCCC-ChhhHHHhHHhhhcC-CCCcEEEEEecchHHH
Q 039167 282 GKKLLLVLDDVWNE-NFHKWEQFNNCLKNC-LYGSKILITTRKEAVA 326 (923)
Q Consensus 282 ~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~ 326 (923)
.++-++++|+.-.. +....+.+...+... ..|.-||++|.+....
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 78889999987332 334455555555432 2366788888886543
No 265
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.13 E-value=0.0012 Score=76.35 Aligned_cols=83 Identities=27% Similarity=0.203 Sum_probs=40.9
Q ss_pred HHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCcccccccccccEEeEeCCCC
Q 039167 705 RRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRN 784 (923)
Q Consensus 705 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~ 784 (923)
+......+++|++|+++++... .+..+......+++|+.|.+..... ++.++.+.+..+..
T Consensus 287 l~~i~~~~~~L~~L~l~~c~~~-------~d~~l~~~~~~c~~l~~l~~~~~~~------------c~~l~~~~l~~~~~ 347 (482)
T KOG1947|consen 287 LVSIAERCPSLRELDLSGCHGL-------TDSGLEALLKNCPNLRELKLLSLNG------------CPSLTDLSLSGLLT 347 (482)
T ss_pred HHHHHHhcCcccEEeeecCccc-------hHHHHHHHHHhCcchhhhhhhhcCC------------CccHHHHHHHHhhc
Confidence 3344556777888888877521 1222333344466666655433221 33444444444432
Q ss_pred CC--CCCC--CCCCCCccceeccCCc
Q 039167 785 CE--HLPP--LGKLPSLESLYIAGMK 806 (923)
Q Consensus 785 ~~--~l~~--l~~L~~L~~L~L~~~~ 806 (923)
.. .+.. ...+++|+.+.+..|.
T Consensus 348 ~~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 348 LTSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred cCchhHhHHHHhcCCCcchhhhhhhh
Confidence 21 1111 4455666666666554
No 266
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.12 E-value=0.0022 Score=63.77 Aligned_cols=60 Identities=27% Similarity=0.210 Sum_probs=34.6
Q ss_pred CCCCCcEEeccCC--CCccccchhhhCCCCCcEEecCCCccccc---cCccccCCCCCCEEeCCCCc
Q 039167 584 KLLHLKYLNLANQ--MEIERLPETLCELYNLEHLNVNCCVKLRE---LPQGIGRLRKLMYLDNECTV 645 (923)
Q Consensus 584 ~l~~L~~L~L~~~--~~l~~lp~~i~~L~~L~~L~L~~~~~l~~---lp~~i~~L~~L~~L~l~~~~ 645 (923)
.|++|++|.++.| +....++-..-++++|++|++++|+ +.. ++ .+.++.+|..|++.+|.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~-pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLR-PLKELENLKSLDLFNCS 127 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccc-hhhhhcchhhhhcccCC
Confidence 3566777777766 4334555555556777777777765 332 21 23455666666666663
No 267
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.11 E-value=0.06 Score=54.52 Aligned_cols=126 Identities=21% Similarity=0.187 Sum_probs=74.8
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCC-----cccHHHHHHHHHHHHhCC------CCCCcCHHH
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSD-----PFDEFRIARAIIEALTGC------LPNFVEFQS 271 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-----~~~~~~~~~~i~~~l~~~------~~~~~~~~~ 271 (923)
.-.+++|+|..|.||||+++.+..- ...-.+.++....+ .....+-..++++.++.. .+..-+..+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L---~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGL---EEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcC---cCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 3468999999999999999999873 23333444433211 112233445555555532 122222333
Q ss_pred HH-HHHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcC--CCCcEEEEEecchHHHHHhcc
Q 039167 272 LM-QHIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNC--LYGSKILITTRKEAVARIMGS 331 (923)
Q Consensus 272 ~~-~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtR~~~v~~~~~~ 331 (923)
.+ -.+.+.|.-++-++|.|..-+. +...-.++...+... ..|-..+..|.+-.|++.+..
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 33 3477888999999999976322 112224444444432 236678999999888877643
No 268
>PTZ00494 tuzin-like protein; Provisional
Probab=96.11 E-value=0.87 Score=49.35 Aligned_cols=168 Identities=15% Similarity=0.123 Sum_probs=105.7
Q ss_pred ccCCCCceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHH
Q 039167 172 SSIDESEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRI 251 (923)
Q Consensus 172 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 251 (923)
....+..+|.|+++-..+...|..-+ ...++++.+.|.-|.||++|.+.....+.+ ..++|.+... ++-
T Consensus 366 a~a~~~~~V~R~~eE~~vRqvL~qld---~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~---EDt 434 (664)
T PTZ00494 366 AAAAEAFEVRREDEEALVRSVLTQMA---PSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGT---EDT 434 (664)
T ss_pred cccccccccchhhHHHHHHHHHhhcc---CCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCC---cch
Confidence 33456679999999888888887654 357899999999999999999888774333 4667777653 456
Q ss_pred HHHHHHHHhCCCCCC-cC-HHHHHHHH---HHHhcCCceEEEecCCCCCChhhHHHhHH---hhhcCCCCcEEEEEecch
Q 039167 252 ARAIIEALTGCLPNF-VE-FQSLMQHI---QKHVAGKKLLLVLDDVWNENFHKWEQFNN---CLKNCLYGSKILITTRKE 323 (923)
Q Consensus 252 ~~~i~~~l~~~~~~~-~~-~~~~~~~l---~~~l~~kr~LlVlDdv~~~~~~~~~~l~~---~l~~~~~gs~iivTtR~~ 323 (923)
++.|.+.++....+. .| .+-..+.. .....++.-+||+-==.. .++..+.. .|.....-+.|++---.+
T Consensus 435 LrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREG---ssL~RVYnE~vaLacDrRlCHvv~EVplE 511 (664)
T PTZ00494 435 LRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREG---SDLGRVYGEVVSLVSDCQACHIVLAVPMK 511 (664)
T ss_pred HHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccC---CcHHHHHHHHHHHHccchhheeeeechHh
Confidence 788999988754432 12 12222222 223456777777752211 12222221 122233456777765544
Q ss_pred HHHHH---hcccceEeCCCCChHHHHHHHHHhh
Q 039167 324 AVARI---MGSTNIISVNVLSGMECWLVFESLA 353 (923)
Q Consensus 324 ~v~~~---~~~~~~~~l~~L~~~~~~~lf~~~a 353 (923)
.+... ......|.++.++.++|.++-.+..
T Consensus 512 SLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 512 ALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hhchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 43222 1234689999999999998877643
No 269
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.092 Score=59.53 Aligned_cols=162 Identities=14% Similarity=0.042 Sum_probs=84.4
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcc--cHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHh
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPF--DEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHV 280 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 280 (923)
...-|.|.|+.|+|||+||+++++... +.+.-.+.+++.+.-. ..+.+++.+ ...+.+.+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l-----------------~~vfse~~ 491 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFL-----------------NNVFSEAL 491 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHH-----------------HHHHHHHH
Confidence 445789999999999999999998533 4444455566665422 122222221 22344556
Q ss_pred cCCceEEEecCCCC------CChhhHH----HhHHhhh-----cCCCCcE--EEEEecchHHHH-Hhc----ccceEeCC
Q 039167 281 AGKKLLLVLDDVWN------ENFHKWE----QFNNCLK-----NCLYGSK--ILITTRKEAVAR-IMG----STNIISVN 338 (923)
Q Consensus 281 ~~kr~LlVlDdv~~------~~~~~~~----~l~~~l~-----~~~~gs~--iivTtR~~~v~~-~~~----~~~~~~l~ 338 (923)
.-.+-+|||||+.- .+..+|. .+..++. ....+.+ +|.|.....-.. ..- -..+..+.
T Consensus 492 ~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ 571 (952)
T KOG0735|consen 492 WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALP 571 (952)
T ss_pred hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecC
Confidence 67889999999932 1111222 1222221 1223444 333443322111 111 13467788
Q ss_pred CCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCC-ChHHHHHH
Q 039167 339 VLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKG-LPLATKTI 386 (923)
Q Consensus 339 ~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~~ 386 (923)
.+...+-.++++... ...... ...+...-+..+|+| .|.-+.++
T Consensus 572 ap~~~~R~~IL~~~~-s~~~~~---~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 572 APAVTRRKEILTTIF-SKNLSD---ITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred CcchhHHHHHHHHHH-Hhhhhh---hhhHHHHHHHHhcCCccchhHHHH
Confidence 888887777776543 211111 111222337788877 34444433
No 270
>PRK06696 uridine kinase; Validated
Probab=96.09 E-value=0.0071 Score=61.51 Aligned_cols=43 Identities=28% Similarity=0.370 Sum_probs=34.7
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhc
Q 039167 181 GRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 181 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.|.+-+++|.+.+.... .....+|+|.|.+|+||||+|+.+..
T Consensus 2 ~~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 2 SRKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred cHHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHH
Confidence 35667778888776532 34788999999999999999999987
No 271
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.07 E-value=0.085 Score=52.53 Aligned_cols=62 Identities=15% Similarity=0.154 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhcCCceEEEecCC-CCCChhhHHHhHHhhhcC--CCCcEEEEEecchHHHHHhc
Q 039167 269 FQSLMQHIQKHVAGKKLLLVLDDV-WNENFHKWEQFNNCLKNC--LYGSKILITTRKEAVARIMG 330 (923)
Q Consensus 269 ~~~~~~~l~~~l~~kr~LlVlDdv-~~~~~~~~~~l~~~l~~~--~~gs~iivTtR~~~v~~~~~ 330 (923)
.++..-.+.+.|-..+-+|+-|+- .+-+...-+.+...+... ..|.-||+.|.+..+|..++
T Consensus 146 GqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 146 GQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 344445678888888999999964 122334445555555543 34778999999999998654
No 272
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.07 E-value=0.038 Score=53.46 Aligned_cols=122 Identities=15% Similarity=0.187 Sum_probs=66.1
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCc-cc--ccc---cc--eEEEEEeCCcccHHHHHHHHHHHHhCCCC------CCcC-
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNG-DV--EKN---FE--KRIWVCVSDPFDEFRIARAIIEALTGCLP------NFVE- 268 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~-~~--~~~---F~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------~~~~- 268 (923)
-.+++|+|+.|+|||||.+.+..+. ++ ... |. ...|+ .+ .+.++.++.... ..-+
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 4589999999999999999886320 11 111 10 12222 11 344555553211 1111
Q ss_pred HHHHHHHHHHHhcCC--ceEEEecCCCCC-ChhhHHHhHHhhhcC-CCCcEEEEEecchHHHHHhcccceEeC
Q 039167 269 FQSLMQHIQKHVAGK--KLLLVLDDVWNE-NFHKWEQFNNCLKNC-LYGSKILITTRKEAVARIMGSTNIISV 337 (923)
Q Consensus 269 ~~~~~~~l~~~l~~k--r~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~~~~~~~~~~l 337 (923)
.+...-.+.+.+-.+ .-++++|+.-.. +....+.+...+... ..|..||++|.+.+.... .+.++.+
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 122233355566666 778888976322 334445555555432 246679999998776542 3444444
No 273
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.04 E-value=0.042 Score=51.64 Aligned_cols=116 Identities=16% Similarity=0.087 Sum_probs=61.5
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCC---cccHHHHHHHHHHHHh-----CC-CCCCcCHH-----
Q 039167 205 HIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSD---PFDEFRIARAIIEALT-----GC-LPNFVEFQ----- 270 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~---~~~~~~~~~~i~~~l~-----~~-~~~~~~~~----- 270 (923)
..|-|++..|.||||+|....-. ...+=..+.++.+-+ ......+++.+ ..+. .. .....+..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~r--a~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALR--ALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 46788888899999999766542 222211233333222 23333333333 0010 00 00001111
Q ss_pred --HHHHHHHHHhc-CCceEEEecCCCC---CChhhHHHhHHhhhcCCCCcEEEEEecch
Q 039167 271 --SLMQHIQKHVA-GKKLLLVLDDVWN---ENFHKWEQFNNCLKNCLYGSKILITTRKE 323 (923)
Q Consensus 271 --~~~~~l~~~l~-~kr~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 323 (923)
...+..++.+. ++-=|+|||++-. -..-..+.+...+.....+.-||+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 11222333443 3456999999832 12245667778887777788999999984
No 274
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.12 Score=50.68 Aligned_cols=65 Identities=12% Similarity=0.137 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcC-CCCcEEEEEecchHHHHHhcccce
Q 039167 270 QSLMQHIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNC-LYGSKILITTRKEAVARIMGSTNI 334 (923)
Q Consensus 270 ~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~~~~~~~~ 334 (923)
+.....+.+.+-=++-+.|||...+- +.+..+.+...+... ..|+-+++.|..+.++.....+.+
T Consensus 149 EkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~v 215 (251)
T COG0396 149 EKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKV 215 (251)
T ss_pred hHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEE
Confidence 44455566666667889999987442 334555555544432 347778999999999887755443
No 275
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.03 E-value=0.028 Score=63.72 Aligned_cols=89 Identities=20% Similarity=0.195 Sum_probs=62.3
Q ss_pred CCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhc
Q 039167 202 KGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVA 281 (923)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (923)
+.-+++-++|++|+||||||.-|++. ..| .++=|++|+.-+...+-..|...+....... -.
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkq----aGY-sVvEINASDeRt~~~v~~kI~~avq~~s~l~-------------ad 385 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQ----AGY-SVVEINASDERTAPMVKEKIENAVQNHSVLD-------------AD 385 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHh----cCc-eEEEecccccccHHHHHHHHHHHHhhccccc-------------cC
Confidence 45689999999999999999999883 222 4677889988888777777766554321110 12
Q ss_pred CCceEEEecCCCCCChhhHHHhHHhhh
Q 039167 282 GKKLLLVLDDVWNENFHKWEQFNNCLK 308 (923)
Q Consensus 282 ~kr~LlVlDdv~~~~~~~~~~l~~~l~ 308 (923)
+++.-+|+|.+........+.+...+.
T Consensus 386 srP~CLViDEIDGa~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGAPRAAVDVILSLVK 412 (877)
T ss_pred CCcceEEEecccCCcHHHHHHHHHHHH
Confidence 578899999996554444555555554
No 276
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.02 E-value=0.16 Score=61.56 Aligned_cols=179 Identities=17% Similarity=0.173 Sum_probs=92.2
Q ss_pred CceecchhhHHHHHHHHhcCCC-------CCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHH
Q 039167 177 SEIFGRKDEKNELVDRLICENS-------IEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEF 249 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 249 (923)
.++.|.+..++.|.+.+.-.-. ..-...+-+.++|++|.|||++|+++++. ....| +.+.. .
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~----~ 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRG----P 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----H
Confidence 3477888777777665532100 01123456889999999999999999984 33333 22221 1
Q ss_pred HHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCC--------Chh----hHHHhHHhhhc--CCCCcE
Q 039167 250 RIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE--------NFH----KWEQFNNCLKN--CLYGSK 315 (923)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--------~~~----~~~~l~~~l~~--~~~gs~ 315 (923)
++ +... . ......+...+...-...+.+|++|++..- +.. ...++...+.. ...+--
T Consensus 522 ~l----~~~~----v-Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 EI----LSKW----V-GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred HH----hhcc----c-CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 11 1110 0 011112222233333456789999998321 000 11222233322 123445
Q ss_pred EEEEecchHHHH-Hh---c-ccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCCh
Q 039167 316 ILITTRKEAVAR-IM---G-STNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLP 380 (923)
Q Consensus 316 iivTtR~~~v~~-~~---~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlP 380 (923)
||.||...+... .+ + -...+.++..+.++-.++|..+.-... .....+ ...+++.+.|.-
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~-~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMP-LAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCC-CCccCC----HHHHHHHcCCCC
Confidence 666776544322 11 1 245788888898888888876542221 111122 345667777643
No 277
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.02 E-value=0.0011 Score=76.68 Aligned_cols=167 Identities=23% Similarity=0.292 Sum_probs=89.2
Q ss_pred CCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCcccccccccccEEeEeCCCCCCCCC--
Q 039167 712 KKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRNCEHLP-- 789 (923)
Q Consensus 712 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-- 789 (923)
+++|+.|.+..+.- .++..+......+++|++|+++++....+........++++|+.|.+..+..+..+.
T Consensus 268 c~~L~~L~l~~c~~-------lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~ 340 (482)
T KOG1947|consen 268 CPNLETLSLSNCSN-------LTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDL 340 (482)
T ss_pred CCCcceEccCCCCc-------cchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHH
Confidence 67788888665541 233455556667788999999887765321112333457777776655543322111
Q ss_pred ---CCCCCC--CccceeccCCcCceEeCccccCCCCCCCCcccccCcccc-eeecccccccc-ccccccccccccccCcc
Q 039167 790 ---PLGKLP--SLESLYIAGMKSVKRVGNEFLGVESDMDGSSVIAFAKLK-KLTFYIMEELE-EWDLGTAIKGEIIIMPR 862 (923)
Q Consensus 790 ---~l~~L~--~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~-~L~l~~~~~L~-~~~~~~~~~~~~~~lp~ 862 (923)
.+.... .+..+.+.+|+.++...-...+. .... .+.+.+|+.++ ++... ...++.
T Consensus 341 ~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~------------~~~~~~~~l~gc~~l~~~l~~~------~~~~~~ 402 (482)
T KOG1947|consen 341 SLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGI------------SDLGLELSLRGCPNLTESLELR------LCRSDS 402 (482)
T ss_pred HHHHhhccCchhHhHHHHhcCCCcchhhhhhhhc------------cCcchHHHhcCCcccchHHHHH------hccCCc
Confidence 112222 46666666666555544332221 1111 34455555552 11111 113344
Q ss_pred cceeeecccccCCCCCc-CCC-CCCCccEEEeccCCchhhhhhc
Q 039167 863 LSSLTIWSCRKLKALPD-HLL-QKSTLQKLEIWGGCHILQERYR 904 (923)
Q Consensus 863 L~~L~l~~c~~l~~lp~-~l~-~l~sL~~L~l~~~c~~l~~~~~ 904 (923)
|+.|.++.|.....--. ... .+..+..+++ .+|+.++....
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~-~~~~~~~~~~~ 445 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDL-SGCRVITLKSL 445 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCc-cCcccccchhh
Confidence 88999988876543211 111 1667888888 88888776654
No 278
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.01 E-value=0.019 Score=58.21 Aligned_cols=43 Identities=16% Similarity=0.108 Sum_probs=31.4
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCccc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFD 247 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 247 (923)
.-.++.|.|.+|+||||+|.+++.. ....-..++|++....++
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 4679999999999999999888763 222334567887655443
No 279
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.99 E-value=0.005 Score=68.88 Aligned_cols=49 Identities=22% Similarity=0.316 Sum_probs=39.7
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhc
Q 039167 178 EIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
+++|.++.+++|++.|......-...-+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 5899999999999999332211233567999999999999999999987
No 280
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.96 E-value=0.036 Score=60.50 Aligned_cols=55 Identities=11% Similarity=0.224 Sum_probs=31.9
Q ss_pred HHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhh-cCCCCcEEEEEecchHHHHHh
Q 039167 275 HIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLK-NCLYGSKILITTRKEAVARIM 329 (923)
Q Consensus 275 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~-~~~~gs~iivTtR~~~v~~~~ 329 (923)
.+.+.+=+.++|+|||.--.. |.+--..+...+. -...|.-+|+.|....+...+
T Consensus 482 aLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~ 538 (580)
T COG4618 482 ALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASV 538 (580)
T ss_pred HHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhc
Confidence 367788899999999966322 1111122344333 233466666666666665543
No 281
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.95 E-value=0.078 Score=59.16 Aligned_cols=102 Identities=12% Similarity=0.137 Sum_probs=52.2
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccH--HHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhc
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDE--FRIARAIIEALTGCLPNFVEFQSLMQHIQKHVA 281 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (923)
.+++.++|++|+||||++..+.........-..+..++... +.. ..-++...+.++.......+..++...+.+ +.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~-~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~ 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT-YRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LR 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc-cHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hC
Confidence 46999999999999999987765322012223455555432 221 122222233333322222334444444543 23
Q ss_pred CCceEEEecCCCCC--ChhhHHHhHHhhh
Q 039167 282 GKKLLLVLDDVWNE--NFHKWEQFNNCLK 308 (923)
Q Consensus 282 ~kr~LlVlDdv~~~--~~~~~~~l~~~l~ 308 (923)
..=+|++|..... +....+.+...+.
T Consensus 299 -~~DlVlIDt~G~~~~d~~~~~~L~~ll~ 326 (424)
T PRK05703 299 -DCDVILIDTAGRSQRDKRLIEELKALIE 326 (424)
T ss_pred -CCCEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence 3568889976432 2233344555554
No 282
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.2 Score=52.40 Aligned_cols=188 Identities=16% Similarity=0.143 Sum_probs=102.1
Q ss_pred ceecchhhHHHHHHHHhcCCC-------CCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHH
Q 039167 178 EIFGRKDEKNELVDRLICENS-------IEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFR 250 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 250 (923)
++=|-++.+++|.+...-+-. .+=..++=|.++|++|.|||-||++|++. ....| +.|... +-
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----IrvvgS---El 221 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IRVVGS---EL 221 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EEeccH---HH
Confidence 466778888888776532211 01235677899999999999999999994 44433 443321 11
Q ss_pred HHHHHHHHHhCCCCCCcCHHHHHHHHHHHhc-CCceEEEecCCCCC-----------Chh---hHHHhHHhhhcC--CCC
Q 039167 251 IARAIIEALTGCLPNFVEFQSLMQHIQKHVA-GKKLLLVLDDVWNE-----------NFH---KWEQFNNCLKNC--LYG 313 (923)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~-----------~~~---~~~~l~~~l~~~--~~g 313 (923)
+++.|- +...+.+.+.+.-+ ..+..|.+|.+... +.+ ..-++...+..+ ...
T Consensus 222 VqKYiG-----------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n 290 (406)
T COG1222 222 VQKYIG-----------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN 290 (406)
T ss_pred HHHHhc-----------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC
Confidence 222221 11223334444443 45789999987320 111 111222223222 235
Q ss_pred cEEEEEecchHHHHHh----cc-cceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCCh----HHHH
Q 039167 314 SKILITTRKEAVARIM----GS-TNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLP----LATK 384 (923)
Q Consensus 314 s~iivTtR~~~v~~~~----~~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlP----Lai~ 384 (923)
-|||..|...++.... |. +..++++.-+.+.-.+.|.-++-.-.- ...-+ .+.+++.|.|.- -|+.
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l-~~dvd----~e~la~~~~g~sGAdlkaic 365 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNL-ADDVD----LELLARLTEGFSGADLKAIC 365 (406)
T ss_pred eEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccC-ccCcC----HHHHHHhcCCCchHHHHHHH
Confidence 6999988876655432 22 567888855555566677766532221 11223 345666666653 4445
Q ss_pred HHHHHHc
Q 039167 385 TIASLLR 391 (923)
Q Consensus 385 ~~~~~l~ 391 (923)
+=|++++
T Consensus 366 tEAGm~A 372 (406)
T COG1222 366 TEAGMFA 372 (406)
T ss_pred HHHhHHH
Confidence 5555543
No 283
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.90 E-value=0.04 Score=53.52 Aligned_cols=118 Identities=21% Similarity=0.142 Sum_probs=63.3
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhC--CC----CC--------CcCH
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTG--CL----PN--------FVEF 269 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~--~~----~~--------~~~~ 269 (923)
-.+++|+|..|.|||||.+.+.... ......+++.-..-.+.. ......++- +. +. -...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 4589999999999999999998742 122344443211000000 011111110 00 00 0111
Q ss_pred HHHHHHHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcC-CCCcEEEEEecchHHHH
Q 039167 270 QSLMQHIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNC-LYGSKILITTRKEAVAR 327 (923)
Q Consensus 270 ~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~ 327 (923)
+...-.+.+.+..++-++++|+.-.. +....+.+...+... ..|..||++|.+.....
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 22233466777788899999987332 334444555555432 23677899998876554
No 284
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.87 E-value=0.038 Score=56.89 Aligned_cols=50 Identities=20% Similarity=0.209 Sum_probs=36.2
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccc----cceEEEEEeCCcccHHHHH
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKN----FEKRIWVCVSDPFDEFRIA 252 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~~~~ 252 (923)
.-.++.|+|.+|+|||++|.+++-....... -..++|++....++..++.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~ 71 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV 71 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH
Confidence 4579999999999999999988643222221 3578899988777655443
No 285
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.86 E-value=0.043 Score=51.35 Aligned_cols=21 Identities=43% Similarity=0.513 Sum_probs=19.4
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 039167 206 IISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~ 226 (923)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999985
No 286
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.84 E-value=0.025 Score=56.09 Aligned_cols=102 Identities=21% Similarity=0.204 Sum_probs=52.6
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHh--
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHV-- 280 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-- 280 (923)
+-+++.|.|++|.||||+++.+... .... ...+.+......-... +.+..+.. ... +..++
T Consensus 17 ~~~~~~l~G~aGtGKT~~l~~~~~~--~~~~-g~~v~~~apT~~Aa~~----L~~~~~~~---a~T-------i~~~l~~ 79 (196)
T PF13604_consen 17 GDRVSVLQGPAGTGKTTLLKALAEA--LEAA-GKRVIGLAPTNKAAKE----LREKTGIE---AQT-------IHSFLYR 79 (196)
T ss_dssp TCSEEEEEESTTSTHHHHHHHHHHH--HHHT-T--EEEEESSHHHHHH----HHHHHTS----EEE-------HHHHTTE
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHH--HHhC-CCeEEEECCcHHHHHH----HHHhhCcc---hhh-------HHHHHhc
Confidence 3468889999999999999988763 2222 2333343333222222 22222211 000 11111
Q ss_pred -----------cCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecch
Q 039167 281 -----------AGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRKE 323 (923)
Q Consensus 281 -----------~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 323 (923)
..++-+||+|+..-.+...+..+....+. .|+|+|+.=-..
T Consensus 80 ~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 80 IPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp ECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred CCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 13446999999966555556666555544 477888765443
No 287
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.09 Score=58.55 Aligned_cols=97 Identities=21% Similarity=0.281 Sum_probs=60.1
Q ss_pred CceecchhhHHHHHHHHhcCCCC------CCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSI------EQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFR 250 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 250 (923)
.++=|.+..+.++.+++..-... +-...+-|.++|++|.|||.||+++.+. ..-.| +.++-+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge--l~vPf-----~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE--LGVPF-----LSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh--cCCce-----Eeecch-----
Confidence 35778888888887776542110 1124567899999999999999999994 43333 333221
Q ss_pred HHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCC
Q 039167 251 IARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVW 293 (923)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~ 293 (923)
.|+..+. ....+.+.+.+.+.-..-++++++|++.
T Consensus 258 ---eivSGvS-----GESEkkiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 258 ---EIVSGVS-----GESEKKIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred ---hhhcccC-----cccHHHHHHHHHHHhccCCeEEEeeccc
Confidence 1211111 1223344444455556789999999984
No 288
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.83 E-value=0.061 Score=55.38 Aligned_cols=88 Identities=20% Similarity=0.184 Sum_probs=52.8
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccc-eEEEEEeCCccc-HHHHHHHHHHHHhCC-------CCCCcCHH---
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFE-KRIWVCVSDPFD-EFRIARAIIEALTGC-------LPNFVEFQ--- 270 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~--- 270 (923)
.-+-++|+|.+|+|||||++.+++. ++.+|+ .++++-+++... ..++.+.+...-... ..+..-..
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 3456899999999999999999984 544554 455666666543 344555544321110 01111111
Q ss_pred --HHHHHHHHHh--c-CCceEEEecCC
Q 039167 271 --SLMQHIQKHV--A-GKKLLLVLDDV 292 (923)
Q Consensus 271 --~~~~~l~~~l--~-~kr~LlVlDdv 292 (923)
...-.+.+++ + ++.+|+++||+
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1122345555 3 89999999999
No 289
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.029 Score=65.56 Aligned_cols=153 Identities=20% Similarity=0.221 Sum_probs=86.5
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCccccccc-----ceEEEEEeCCcccHHHHH
Q 039167 178 EIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNF-----EKRIWVCVSDPFDEFRIA 252 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-----~~~~wv~~s~~~~~~~~~ 252 (923)
.++||++|+.++++.|..... +-. .++|.+|||||++|.-++... +.+.- +..++. .|+-
T Consensus 171 PvIGRd~EI~r~iqIL~RR~K----NNP--vLiGEpGVGKTAIvEGLA~rI-v~g~VP~~L~~~~i~s-----LD~g--- 235 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTK----NNP--VLVGEPGVGKTAIVEGLAQRI-VNGDVPESLKDKRIYS-----LDLG--- 235 (786)
T ss_pred CCcChHHHHHHHHHHHhccCC----CCC--eEecCCCCCHHHHHHHHHHHH-hcCCCCHHHcCCEEEE-----ecHH---
Confidence 589999999999999986532 222 367999999999987665521 11111 111111 0111
Q ss_pred HHHHHHHhCCCCCCcCHHHHHHHHHHHh-cCCceEEEecCCCCC---------ChhhHHHhHHhhhcCCCCcEEEEEecc
Q 039167 253 RAIIEALTGCLPNFVEFQSLMQHIQKHV-AGKKLLLVLDDVWNE---------NFHKWEQFNNCLKNCLYGSKILITTRK 322 (923)
Q Consensus 253 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtR~ 322 (923)
.-+.+ ..-..+.++..+.+.+.+ +.++..|++|.+..- ..+.-..++.+|..+. --.|-.||-+
T Consensus 236 ----~LvAG-akyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe-L~~IGATT~~ 309 (786)
T COG0542 236 ----SLVAG-AKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE-LRCIGATTLD 309 (786)
T ss_pred ----HHhcc-ccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC-eEEEEeccHH
Confidence 11111 111234444444444444 345899999988431 1334444555555443 2245566665
Q ss_pred hHHHH------HhcccceEeCCCCChHHHHHHHHH
Q 039167 323 EAVAR------IMGSTNIISVNVLSGMECWLVFES 351 (923)
Q Consensus 323 ~~v~~------~~~~~~~~~l~~L~~~~~~~lf~~ 351 (923)
+.--. -....+.+.+...+.+++...++-
T Consensus 310 EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrG 344 (786)
T COG0542 310 EYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRG 344 (786)
T ss_pred HHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHH
Confidence 42111 113357888999999999988864
No 290
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.80 E-value=0.0076 Score=57.39 Aligned_cols=37 Identities=32% Similarity=0.260 Sum_probs=16.1
Q ss_pred CCCCCcEEeccCCCCccccchhhh-CCCCCcEEecCCCc
Q 039167 584 KLLHLKYLNLANQMEIERLPETLC-ELYNLEHLNVNCCV 621 (923)
Q Consensus 584 ~l~~L~~L~L~~~~~l~~lp~~i~-~L~~L~~L~L~~~~ 621 (923)
.+..|.+|.|.+|. |..+-+.+. .+++|++|.|.+|+
T Consensus 62 ~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred CccccceEEecCCc-ceeeccchhhhccccceEEecCcc
Confidence 34445555555444 433332232 23345555555443
No 291
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.80 E-value=0.019 Score=60.89 Aligned_cols=83 Identities=23% Similarity=0.197 Sum_probs=52.8
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCC-----CCCCcCHHHHHHHHH
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGC-----LPNFVEFQSLMQHIQ 277 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~l~ 277 (923)
.-+++-|+|++|+||||||.+++.. ....-..++|++....++.. .++.++.. .....+.++....+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 5678999999999999999887653 33334567899887766653 23333321 111223455555555
Q ss_pred HHhc-CCceEEEecCC
Q 039167 278 KHVA-GKKLLLVLDDV 292 (923)
Q Consensus 278 ~~l~-~kr~LlVlDdv 292 (923)
...+ +.--+||+|.|
T Consensus 127 ~li~s~~~~lIVIDSv 142 (325)
T cd00983 127 SLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHhccCCCEEEEcch
Confidence 5443 45668999987
No 292
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.79 E-value=0.017 Score=56.67 Aligned_cols=79 Identities=19% Similarity=0.264 Sum_probs=44.1
Q ss_pred CCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCccc-HHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHh
Q 039167 202 KGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFD-EFRIARAIIEALTGCLPNFVEFQSLMQHIQKHV 280 (923)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 280 (923)
..+.+|||.|.+|+||||+|+.++.. ....+ ++-++--.-+. ....-..--....-..++..|.+-+.+.|...+
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~--~~~~~--~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~ 81 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQ--LGVEK--VVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLK 81 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHH--hCcCc--ceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHH
Confidence 35689999999999999999999883 33331 11111111000 000000000001122455567777778888888
Q ss_pred cCCc
Q 039167 281 AGKK 284 (923)
Q Consensus 281 ~~kr 284 (923)
++++
T Consensus 82 ~g~~ 85 (218)
T COG0572 82 QGKP 85 (218)
T ss_pred cCCc
Confidence 8877
No 293
>PRK14974 cell division protein FtsY; Provisional
Probab=95.76 E-value=0.081 Score=56.68 Aligned_cols=102 Identities=17% Similarity=0.174 Sum_probs=52.4
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCccc--HHHHHHHHHHHHhCCCC---CCcCHHHH-HHHH
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFD--EFRIARAIIEALTGCLP---NFVEFQSL-MQHI 276 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~---~~~~~~~~-~~~l 276 (923)
+..+|.++|++|+||||++..++.... ...+ .++.+. .+.+. ...-++.....++.... ...+.... ...+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 578999999999999998877776321 1223 233332 33332 22334445555553211 11222222 2333
Q ss_pred HHHhcCCceEEEecCCCCC--ChhhHHHhHHhh
Q 039167 277 QKHVAGKKLLLVLDDVWNE--NFHKWEQFNNCL 307 (923)
Q Consensus 277 ~~~l~~kr~LlVlDdv~~~--~~~~~~~l~~~l 307 (923)
...-....-+|++|-.... +...++.+....
T Consensus 216 ~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~ 248 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRMHTDANLMDELKKIV 248 (336)
T ss_pred HHHHhCCCCEEEEECCCccCCcHHHHHHHHHHH
Confidence 3322223348999987543 233445555443
No 294
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.76 E-value=0.097 Score=52.59 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.6
Q ss_pred CEEEEEEecCCChHHHHHHHHhc
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999998864
No 295
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.73 E-value=0.032 Score=55.33 Aligned_cols=79 Identities=22% Similarity=0.329 Sum_probs=42.6
Q ss_pred EEEEEecCCChHHHHHHHHhcCcccc-cccc---eEEEEEeCCcccHHHHHHHHHHHH----hCCCCCCcCHHHHHHHHH
Q 039167 206 IISLVGMGGIGKTTLAQFAYNNGDVE-KNFE---KRIWVCVSDPFDEFRIARAIIEAL----TGCLPNFVEFQSLMQHIQ 277 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~---~~~wv~~s~~~~~~~~~~~i~~~l----~~~~~~~~~~~~~~~~l~ 277 (923)
||+|.|.+|+||||+|+.+... .. ..+. ....+.............. -... ....+...+.+.+.+.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~--L~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQI--LNKRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH--HTTCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH--hCccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 6999999999999999999773 22 1222 1233332222222221111 1111 112344566777777777
Q ss_pred HHhcCCceEE
Q 039167 278 KHVAGKKLLL 287 (923)
Q Consensus 278 ~~l~~kr~Ll 287 (923)
...+++.+-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 7666665433
No 296
>PTZ00301 uridine kinase; Provisional
Probab=95.73 E-value=0.016 Score=57.87 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.5
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
...+|+|.|.+|+||||||+.+.+
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHH
Confidence 357999999999999999998876
No 297
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.73 E-value=0.18 Score=57.15 Aligned_cols=178 Identities=16% Similarity=0.119 Sum_probs=88.0
Q ss_pred ceecchhhHHHHHHHHhc---C-CCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHH
Q 039167 178 EIFGRKDEKNELVDRLIC---E-NSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIAR 253 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~---~-~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 253 (923)
++.|.+..++.+...... . ...+-...+-|.++|++|.|||.+|+.+.+. ....| +-+..+. +..
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~~------l~~ 297 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVGK------LFG 297 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhHH------hcc
Confidence 467766655555432211 0 0001134567899999999999999999883 32222 1111111 100
Q ss_pred HHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCC--------ChhhH----HHhHHhhhcCCCCcEEEEEec
Q 039167 254 AIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE--------NFHKW----EQFNNCLKNCLYGSKILITTR 321 (923)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--------~~~~~----~~l~~~l~~~~~gs~iivTtR 321 (923)
...+ .....+.+.+...-...+++|++|++..- +...- ..+...+.....+--||.||.
T Consensus 298 --------~~vG-ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN 368 (489)
T CHL00195 298 --------GIVG-ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATAN 368 (489)
T ss_pred --------cccC-hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecC
Confidence 0000 01112222222222357899999998421 00011 112222222333445666776
Q ss_pred chHH-HHHh---c-ccceEeCCCCChHHHHHHHHHhhcCCCCcc-chhhHHHHHHHHHHhcCCC
Q 039167 322 KEAV-ARIM---G-STNIISVNVLSGMECWLVFESLAFVGKSME-ERENLEKIGREITRKCKGL 379 (923)
Q Consensus 322 ~~~v-~~~~---~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~-~~~~~~~~~~~i~~~c~Gl 379 (923)
+.+. -..+ + -+..+.++.-+.++-.++|..+........ ...+ ...+++.+.|.
T Consensus 369 ~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~d----l~~La~~T~Gf 428 (489)
T CHL00195 369 NIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYD----IKKLSKLSNKF 428 (489)
T ss_pred ChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccC----HHHHHhhcCCC
Confidence 5432 1111 2 245788888899999999987764322111 1112 34566666664
No 298
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.72 E-value=0.089 Score=52.82 Aligned_cols=61 Identities=8% Similarity=0.119 Sum_probs=38.1
Q ss_pred HHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcC-CCCcEEEEEecchHHHHHhcccceEeCCC
Q 039167 276 IQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNC-LYGSKILITTRKEAVARIMGSTNIISVNV 339 (923)
Q Consensus 276 l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~~~~~~~~~~l~~ 339 (923)
+.+.+..++-++++|+--.. +....+.+...+... ..|..||++|.+...... .+++.++.
T Consensus 138 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~ 200 (207)
T PRK13539 138 LARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGP 200 (207)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecC
Confidence 45566677889999976322 334455555555432 346678999988655442 56666655
No 299
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.72 E-value=0.087 Score=57.62 Aligned_cols=105 Identities=16% Similarity=0.200 Sum_probs=57.6
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCccccc-cc-ceEEEEEeCCcccHH--HHHHHHHHHHhCCCCCCcCHHHHHHHHHH
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEK-NF-EKRIWVCVSDPFDEF--RIARAIIEALTGCLPNFVEFQSLMQHIQK 278 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F-~~~~wv~~s~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 278 (923)
..++|.++|+.|+||||.+..+........ .- ..+..++.. .+... .-++..++.++.+.....+.+.+...+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 467999999999999999988876322211 11 233344433 33322 22444445444432233344555554544
Q ss_pred HhcCCceEEEecCCCCCC--hhhHHHhHHhhhcC
Q 039167 279 HVAGKKLLLVLDDVWNEN--FHKWEQFNNCLKNC 310 (923)
Q Consensus 279 ~l~~kr~LlVlDdv~~~~--~~~~~~l~~~l~~~ 310 (923)
. .+.-+|++|...... ......+...+...
T Consensus 252 ~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~ 283 (388)
T PRK12723 252 S--KDFDLVLVDTIGKSPKDFMKLAEMKELLNAC 283 (388)
T ss_pred h--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhc
Confidence 3 456789999885432 12344555555443
No 300
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.71 E-value=0.04 Score=57.06 Aligned_cols=56 Identities=25% Similarity=0.274 Sum_probs=38.6
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCccccc----ccceEEEEEeCCcccHHHHHHHHHHHH
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEK----NFEKRIWVCVSDPFDEFRIARAIIEAL 259 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l 259 (923)
.-.+.=|+|.+|+|||.|+.+++-...+.. .=..++|++-...|+..++. +|++..
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~ 96 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERF 96 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHT
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcc
Confidence 346899999999999999977754322221 12358899988888887765 455543
No 301
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.70 E-value=0.049 Score=53.17 Aligned_cols=121 Identities=17% Similarity=0.079 Sum_probs=61.7
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhC--CCCC---C----------cC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTG--CLPN---F----------VE 268 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~--~~~~---~----------~~ 268 (923)
-.+++|+|+.|.|||||++.+.... ......+.+.-..-.....-.......+.- +.+. . -+
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS 102 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLE---EPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLS 102 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCC
Confidence 4589999999999999999998632 222333333211000000000011111110 0000 0 11
Q ss_pred -HHHHHHHHHHHhcCCceEEEecCCCC-CChhhHHHhHHhhhcCC-C-CcEEEEEecchHHHH
Q 039167 269 -FQSLMQHIQKHVAGKKLLLVLDDVWN-ENFHKWEQFNNCLKNCL-Y-GSKILITTRKEAVAR 327 (923)
Q Consensus 269 -~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~-~-gs~iivTtR~~~v~~ 327 (923)
.+...-.+.+.+..++=++++|+.-. -+......+...+.... . |..||++|.+.....
T Consensus 103 ~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 103 GGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 12223345666777888999997633 23344455555554322 2 567888888765544
No 302
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.68 E-value=0.01 Score=54.47 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=21.2
Q ss_pred CEEEEEEecCCChHHHHHHHHhcC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.--|+|.||+|+||||+++.+.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH
Confidence 346899999999999999999874
No 303
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.68 E-value=0.074 Score=62.03 Aligned_cols=134 Identities=15% Similarity=0.122 Sum_probs=74.4
Q ss_pred CCCceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcc-cccccceEEEEEeCCcccHHHHHH
Q 039167 175 DESEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGD-VEKNFEKRIWVCVSDPFDEFRIAR 253 (923)
Q Consensus 175 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~s~~~~~~~~~~ 253 (923)
....++|....+.++.+.+..-. .....|.|+|..|+|||++|+.+++... ... ..+.++++.-. ...+.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a----~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~---pfv~i~c~~~~--~~~~~ 264 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVA----RSNSTVLLRGESGTGKELIAKAIHYLSPRAKR---PFVKVNCAALS--ETLLE 264 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHh----CcCCCEEEECCCCccHHHHHHHHHHhCCCCCC---CeEEeecCCCC--HHHHH
Confidence 34579999999999888775432 1344678999999999999999987421 112 22334443321 12222
Q ss_pred HHHHHHhCCCCCC-cCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCC---C--------CcEEEEEec
Q 039167 254 AIIEALTGCLPNF-VEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCL---Y--------GSKILITTR 321 (923)
Q Consensus 254 ~i~~~l~~~~~~~-~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~---~--------gs~iivTtR 321 (923)
. .+.+..... ..... ......-....=.|+||+|..-.......+...+..+. . ..|||.||.
T Consensus 265 ~---~lfg~~~~~~~~~~~--~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~ 339 (534)
T TIGR01817 265 S---ELFGHEKGAFTGAIA--QRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATN 339 (534)
T ss_pred H---HHcCCCCCccCCCCc--CCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCC
Confidence 1 222211110 00000 00000112234568999997766666667777765432 1 248888876
Q ss_pred c
Q 039167 322 K 322 (923)
Q Consensus 322 ~ 322 (923)
.
T Consensus 340 ~ 340 (534)
T TIGR01817 340 R 340 (534)
T ss_pred C
Confidence 4
No 304
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.68 E-value=0.2 Score=50.45 Aligned_cols=208 Identities=11% Similarity=0.127 Sum_probs=111.3
Q ss_pred eecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcC----cccccccceEEEEEeCCc---------
Q 039167 179 IFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNN----GDVEKNFEKRIWVCVSDP--------- 245 (923)
Q Consensus 179 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~----~~~~~~F~~~~wv~~s~~--------- 245 (923)
+.++++....+..... ..+..-+.++|+.|.||-|.+..+.+. .-.+-.-+.+.|.+-|..
T Consensus 15 l~~~~e~~~~Lksl~~------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSS------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhcc------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 5566666666666553 235677889999999999988655443 111223345556554432
Q ss_pred -c-----------cHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCce-EEEecCCCCCChhhHHHhHHhhhcCCC
Q 039167 246 -F-----------DEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKL-LLVLDDVWNENFHKWEQFNNCLKNCLY 312 (923)
Q Consensus 246 -~-----------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~~~ 312 (923)
. .-+-+.++++++++...+ +. .-..+.| ++|+-.+.+-..+.-..++.....-.+
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~q-----------ie-~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQ-----------IE-TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcc-----------hh-hccccceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 1 012233333333322110 00 0012334 455555533333444455555554455
Q ss_pred CcEEEEEecc--hHHHHHhcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHHHHH
Q 039167 313 GSKILITTRK--EAVARIMGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTIASLL 390 (923)
Q Consensus 313 gs~iivTtR~--~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l 390 (923)
.+|+|+.-.+ +-+...-...-.+++...+++|....+++.+-..+- ..+ .+++.+|+++++|.---...+-..+
T Consensus 157 ~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l-~lp---~~~l~rIa~kS~~nLRrAllmlE~~ 232 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGL-QLP---KELLKRIAEKSNRNLRRALLMLEAV 232 (351)
T ss_pred CceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcc-cCc---HHHHHHHHHHhcccHHHHHHHHHHH
Confidence 6787774332 222222233557899999999999998876543222 111 5789999999998643332222222
Q ss_pred ccC--C--------CHHHHHHHHhhhhh
Q 039167 391 RSK--N--------TEKEWQNILKSEIW 408 (923)
Q Consensus 391 ~~~--~--------~~~~w~~~l~~~~~ 408 (923)
+-+ + ..-+|+-.+.+...
T Consensus 233 ~~~n~~~~a~~~~i~~~dWe~~i~e~a~ 260 (351)
T KOG2035|consen 233 RVNNEPFTANSQVIPKPDWEIYIQEIAR 260 (351)
T ss_pred HhccccccccCCCCCCccHHHHHHHHHH
Confidence 211 1 24578877765433
No 305
>PRK05439 pantothenate kinase; Provisional
Probab=95.66 E-value=0.053 Score=57.20 Aligned_cols=80 Identities=21% Similarity=0.282 Sum_probs=44.9
Q ss_pred CCCCEEEEEEecCCChHHHHHHHHhcCcccccc--cceEEEEEeCCcccHHHHHHHHHHHHh--CCCCCCcCHHHHHHHH
Q 039167 201 QKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKN--FEKRIWVCVSDPFDEFRIARAIIEALT--GCLPNFVEFQSLMQHI 276 (923)
Q Consensus 201 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~s~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~l 276 (923)
.....+|+|.|.+|+||||+|+.+..- .... -..+.-++...-+...+.+.. ..+. ...++.-|.+.+...+
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~--l~~~~~~~~v~vi~~DdFy~~~~~l~~--~~l~~~kg~Pes~D~~~l~~~L 158 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQAL--LSRWPEHPKVELVTTDGFLYPNAVLEE--RGLMKRKGFPESYDMRALLRFL 158 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH--HHhhCCCCceEEEeccccccCHHHHhh--hhccccCCCcccccHHHHHHHH
Confidence 457789999999999999999988762 2221 112333433332222222211 0111 1234556677777777
Q ss_pred HHHhcCCc
Q 039167 277 QKHVAGKK 284 (923)
Q Consensus 277 ~~~l~~kr 284 (923)
.....|+.
T Consensus 159 ~~Lk~G~~ 166 (311)
T PRK05439 159 SDVKSGKP 166 (311)
T ss_pred HHHHcCCC
Confidence 76666664
No 306
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.65 E-value=0.16 Score=56.53 Aligned_cols=25 Identities=44% Similarity=0.510 Sum_probs=22.4
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.+.+|.++|.+|+||||+|..++..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~ 118 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARY 118 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999999999888763
No 307
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.65 E-value=0.21 Score=50.20 Aligned_cols=54 Identities=13% Similarity=0.175 Sum_probs=33.8
Q ss_pred HHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcCCCCcEEEEEecchHHHHH
Q 039167 275 HIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNCLYGSKILITTRKEAVARI 328 (923)
Q Consensus 275 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 328 (923)
.+.+.+-.++-++++|+.... +....+.+...+.....|..||++|.+......
T Consensus 135 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~ 189 (207)
T cd03369 135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID 189 (207)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 355566677888999987432 334445555555543346678888887665543
No 308
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.64 E-value=0.049 Score=51.96 Aligned_cols=116 Identities=21% Similarity=0.179 Sum_probs=64.3
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcc--cHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcC
Q 039167 205 HIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPF--DEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAG 282 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 282 (923)
.+++|+|..|.|||||.+.+.... ......+++...... ..... ...+.-. ......+...-.+...+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~~----~~~i~~~-~qlS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEEL----RRRIGYV-PQLSGGQRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHHH----HhceEEE-eeCCHHHHHHHHHHHHHhc
Confidence 689999999999999999998742 233455554322111 11111 1111110 0011222333346666677
Q ss_pred CceEEEecCCCCC-ChhhHHHhHHhhhcC-CCCcEEEEEecchHHHHH
Q 039167 283 KKLLLVLDDVWNE-NFHKWEQFNNCLKNC-LYGSKILITTRKEAVARI 328 (923)
Q Consensus 283 kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~~ 328 (923)
..-++++|+.-.. +......+...+... ..+..+|++|.+......
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 7889999987432 233444455544322 225678888888766554
No 309
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.62 E-value=0.049 Score=58.77 Aligned_cols=131 Identities=11% Similarity=0.061 Sum_probs=71.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHH
Q 039167 178 EIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIE 257 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 257 (923)
.++|+...+.++.+.+..-.. ...-|.|+|..|+||+++|+.++..... .-...+.++++.. +...+...+
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~~s~r--~~~pfv~v~c~~~-~~~~~~~~l-- 77 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHYLSSR--WQGPFISLNCAAL-NENLLDSEL-- 77 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhCCc--cCCCeEEEeCCCC-CHHHHHHHH--
Confidence 488999888888887765422 3456889999999999999999863111 1112233444432 222222222
Q ss_pred HHhCCCCCC-cC-HHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCC-----------CCcEEEEEecc
Q 039167 258 ALTGCLPNF-VE-FQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCL-----------YGSKILITTRK 322 (923)
Q Consensus 258 ~l~~~~~~~-~~-~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~ 322 (923)
.+..... .. .......+ -....=.|+||+|..-.......+...+..+. ...|||.||..
T Consensus 78 --fg~~~~~~~g~~~~~~g~l---~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~ 150 (326)
T PRK11608 78 --FGHEAGAFTGAQKRHPGRF---ERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (326)
T ss_pred --ccccccccCCcccccCCch---hccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCch
Confidence 1111100 00 00000111 12233458899997766666667777665432 13588888765
No 310
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.62 E-value=0.038 Score=55.85 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHhcC
Q 039167 206 IISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
+|+|.|..|+||||+|+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 311
>PRK08233 hypothetical protein; Provisional
Probab=95.61 E-value=0.037 Score=54.31 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.8
Q ss_pred CEEEEEEecCCChHHHHHHHHhcC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
..+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999873
No 312
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.59 E-value=0.077 Score=55.09 Aligned_cols=129 Identities=13% Similarity=0.063 Sum_probs=66.7
Q ss_pred hHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCC-
Q 039167 185 EKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCL- 263 (923)
Q Consensus 185 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~- 263 (923)
..+.+...+... ....-++|+|+.|.|||||.+.+.... ......+++.- ......+-..++......-.
T Consensus 97 ~~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~~---~~~~G~i~~~g-~~v~~~d~~~ei~~~~~~~~q 167 (270)
T TIGR02858 97 AADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARIL---STGISQLGLRG-KKVGIVDERSEIAGCVNGVPQ 167 (270)
T ss_pred cHHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCcc---CCCCceEEECC-EEeecchhHHHHHHHhccccc
Confidence 345555555432 245789999999999999999998742 22233333321 11110011122222221100
Q ss_pred ----C--CCcCHHHHHHHHHHHh-cCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecchHHHH
Q 039167 264 ----P--NFVEFQSLMQHIQKHV-AGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRKEAVAR 327 (923)
Q Consensus 264 ----~--~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 327 (923)
. +..+.......+...+ .-.+-++++|.+-. .+.+..+...+. .|..||+||.+..+..
T Consensus 168 ~~~~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~--~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 168 HDVGIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGR--EEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred ccccccccccccchHHHHHHHHHHhCCCCEEEEeCCCc--HHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 0 0001011122233333 25788999999843 344555555443 4778999999876644
No 313
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.59 E-value=0.03 Score=67.26 Aligned_cols=114 Identities=14% Similarity=0.126 Sum_probs=55.2
Q ss_pred CCceEEEecCCCCC-ChhhHHHhH-Hhhhc-CCCCcEEEEEecchHHHHHhcccceEeCCCCChH-HHHHHHHHhhcCCC
Q 039167 282 GKKLLLVLDDVWNE-NFHKWEQFN-NCLKN-CLYGSKILITTRKEAVARIMGSTNIISVNVLSGM-ECWLVFESLAFVGK 357 (923)
Q Consensus 282 ~kr~LlVlDdv~~~-~~~~~~~l~-~~l~~-~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~a~~~~ 357 (923)
+.+-|+++|..... +..+...+. ..+.. ...|+.+|+||....+.........+.-..+..+ +... |..+...+.
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~-p~Ykl~~G~ 479 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLS-PTYKLLKGI 479 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCc-eEEEECCCC
Confidence 47899999998543 333333342 22222 1247899999999877543322111110001100 1100 111111111
Q ss_pred CccchhhHHHHHHHHHHhcCCChHHHHHHHHHHccCCCHHHHHHHHh
Q 039167 358 SMEERENLEKIGREITRKCKGLPLATKTIASLLRSKNTEKEWQNILK 404 (923)
Q Consensus 358 ~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~l~ 404 (923)
+.. ..|-+|++++ |+|-.+..-|..+... ......+++.
T Consensus 480 --~g~----S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~ 518 (771)
T TIGR01069 480 --PGE----SYAFEIAQRY-GIPHFIIEQAKTFYGE-FKEEINVLIE 518 (771)
T ss_pred --CCC----cHHHHHHHHh-CcCHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 111 2266677666 8888888888777544 2234444443
No 314
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.57 E-value=0.095 Score=50.89 Aligned_cols=21 Identities=48% Similarity=0.580 Sum_probs=19.2
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 039167 206 IISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~ 226 (923)
++.++|++|+||||+++.+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999988876
No 315
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.55 E-value=0.054 Score=60.66 Aligned_cols=89 Identities=18% Similarity=0.110 Sum_probs=45.6
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCccc--HHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHh
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFD--EFRIARAIIEALTGCLPNFVEFQSLMQHIQKHV 280 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 280 (923)
...+|+|+|++|+||||++..+......+.....+..++. +.+. ....+......++.......+...+...+.+ +
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdt-DtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~-l 426 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTT-DTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER-L 426 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEec-ccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHH-h
Confidence 4579999999999999999888763111111223444433 2222 1222222222222222222333444444443 3
Q ss_pred cCCceEEEecCCCC
Q 039167 281 AGKKLLLVLDDVWN 294 (923)
Q Consensus 281 ~~kr~LlVlDdv~~ 294 (923)
. ..-+|++|....
T Consensus 427 ~-~~DLVLIDTaG~ 439 (559)
T PRK12727 427 R-DYKLVLIDTAGM 439 (559)
T ss_pred c-cCCEEEecCCCc
Confidence 3 356888898753
No 316
>PHA02244 ATPase-like protein
Probab=95.53 E-value=0.074 Score=56.88 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHhcC
Q 039167 206 IISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
-|.|+|++|+|||+||++++..
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4778999999999999999883
No 317
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.52 E-value=0.1 Score=56.49 Aligned_cols=90 Identities=14% Similarity=0.106 Sum_probs=48.7
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCC-cccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSD-PFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVA 281 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (923)
.-.++.++|+.|+||||++.++......+.....+..+.... .....+-++...+.++.......+..++...+. .+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-~l~ 214 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-ELR 214 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH-Hhc
Confidence 346899999999999999999887321111122344554222 223344445555555543222222223333333 344
Q ss_pred CCceEEEecCCCC
Q 039167 282 GKKLLLVLDDVWN 294 (923)
Q Consensus 282 ~kr~LlVlDdv~~ 294 (923)
++ -+|++|....
T Consensus 215 ~~-DlVLIDTaG~ 226 (374)
T PRK14722 215 NK-HMVLIDTIGM 226 (374)
T ss_pred CC-CEEEEcCCCC
Confidence 44 5666998854
No 318
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.52 E-value=0.053 Score=55.40 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=23.5
Q ss_pred CCCEEEEEEecCCChHHHHHHHHhcC
Q 039167 202 KGPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
....+++|.|+.|+|||||++.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999873
No 319
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.51 E-value=0.052 Score=56.81 Aligned_cols=25 Identities=40% Similarity=0.493 Sum_probs=22.0
Q ss_pred CCCEEEEEEecCCChHHHHHHHHhc
Q 039167 202 KGPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
..+.+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999987754
No 320
>PRK07667 uridine kinase; Provisional
Probab=95.50 E-value=0.018 Score=57.09 Aligned_cols=38 Identities=26% Similarity=0.380 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcC
Q 039167 186 KNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 186 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.+.+.+.+.... ....+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 456666665432 35589999999999999999999873
No 321
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.47 E-value=0.073 Score=64.05 Aligned_cols=133 Identities=15% Similarity=0.164 Sum_probs=74.3
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAII 256 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 256 (923)
..++|+...+.++.+.+..-. .....|.|+|..|+|||++|+.+++.... .-...+.+++..-. ...+..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a----~~~~pVLI~GE~GTGK~~lA~~ih~~s~r--~~~~~v~i~c~~~~--~~~~~~-- 445 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVA----QSDSTVLILGETGTGKELIARAIHNLSGR--NNRRMVKMNCAAMP--AGLLES-- 445 (686)
T ss_pred cceeecCHHHHHHHHHHHHHh----CCCCCEEEECCCCcCHHHHHHHHHHhcCC--CCCCeEEEecccCC--hhHhhh--
Confidence 368999988888877665332 23457899999999999999999874211 11133344443321 122111
Q ss_pred HHHhCCCCCC-cC-HHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCC-----------CCcEEEEEecch
Q 039167 257 EALTGCLPNF-VE-FQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCL-----------YGSKILITTRKE 323 (923)
Q Consensus 257 ~~l~~~~~~~-~~-~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~~ 323 (923)
.+.+..... .. .......+ -....=.|+||+|..-.......+...+..+. .+.|||.||...
T Consensus 446 -~lfg~~~~~~~g~~~~~~g~l---e~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 446 -DLFGHERGAFTGASAQRIGRF---ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred -hhcCcccccccccccchhhHH---HhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 122211110 00 00111111 12234579999997766666667777765432 245888888653
No 322
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.45 E-value=0.0051 Score=61.83 Aligned_cols=85 Identities=20% Similarity=0.194 Sum_probs=46.3
Q ss_pred CCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCcccc-cccccccEEeEeCCCC-CCCC
Q 039167 711 KKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKNWI-MSLTNLRFLGLHEWRN-CEHL 788 (923)
Q Consensus 711 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~-~~l~~L~~L~L~~~~~-~~~l 788 (923)
.+++++.|+|.||.+++ ..++...+..+|.|+.|+|+.|..... + ..+ ....+|+.|.|.+... +...
T Consensus 69 ~~~~v~elDL~~N~iSd-------WseI~~ile~lP~l~~LNls~N~L~s~-I--~~lp~p~~nl~~lVLNgT~L~w~~~ 138 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISD-------WSEIGAILEQLPALTTLNLSCNSLSSD-I--KSLPLPLKNLRVLVLNGTGLSWTQS 138 (418)
T ss_pred Hhhhhhhhhcccchhcc-------HHHHHHHHhcCccceEeeccCCcCCCc-c--ccCcccccceEEEEEcCCCCChhhh
Confidence 34566677777776432 334445556667777777776654431 1 011 1345677777766542 2222
Q ss_pred CC-CCCCCCccceeccCC
Q 039167 789 PP-LGKLPSLESLYIAGM 805 (923)
Q Consensus 789 ~~-l~~L~~L~~L~L~~~ 805 (923)
.. +..+|.++.|+++.|
T Consensus 139 ~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 139 TSSLDDLPKVTELHMSDN 156 (418)
T ss_pred hhhhhcchhhhhhhhccc
Confidence 22 555666666666655
No 323
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.43 E-value=0.23 Score=55.10 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=21.1
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.+.++.++|.+|+||||.|..++.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999877765
No 324
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.42 E-value=0.13 Score=55.36 Aligned_cols=90 Identities=20% Similarity=0.134 Sum_probs=52.5
Q ss_pred CCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCccc--HHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHH
Q 039167 202 KGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFD--EFRIARAIIEALTGCLPNFVEFQSLMQHIQKH 279 (923)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 279 (923)
.+.+++.++|+.|+||||++..+... ....-..+.+++.. ++. ..+-++...+.++.......+..++...+...
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaD-tyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l 280 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTD-TFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYM 280 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCC-ccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHH
Confidence 35689999999999999999888763 21121234455543 332 23344445554443322234555555555443
Q ss_pred h-cCCceEEEecCCCC
Q 039167 280 V-AGKKLLLVLDDVWN 294 (923)
Q Consensus 280 l-~~kr~LlVlDdv~~ 294 (923)
- .+..-+|++|-...
T Consensus 281 ~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 281 TYVNCVDHILIDTVGR 296 (407)
T ss_pred HhcCCCCEEEEECCCC
Confidence 2 14457888897754
No 325
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.41 E-value=0.19 Score=51.07 Aligned_cols=53 Identities=11% Similarity=0.155 Sum_probs=32.5
Q ss_pred HHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcCCCCcEEEEEecchHHHHH
Q 039167 276 IQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNCLYGSKILITTRKEAVARI 328 (923)
Q Consensus 276 l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 328 (923)
+.+.+..++-++++|+.... +....+.+...+.....+..||++|.+......
T Consensus 150 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 203 (221)
T cd03244 150 LARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID 203 (221)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 45556667789999987432 334445555555543335568888887655443
No 326
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.41 E-value=0.13 Score=52.87 Aligned_cols=86 Identities=16% Similarity=0.189 Sum_probs=52.2
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCC-------------------
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCL------------------- 263 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~------------------- 263 (923)
.-.++.|+|.+|+|||++|.++.... .+ .=..++|+...+.. .++.+.+ .+++-..
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~-~~-~g~~~~y~~~e~~~--~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGA-LK-QGKKVYVITTENTS--KSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH-Hh-CCCEEEEEEcCCCH--HHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 56789999999999999999885421 22 23467788876543 3444432 2222110
Q ss_pred -CCCcCHHHHHHHHHHHhcC-CceEEEecCCC
Q 039167 264 -PNFVEFQSLMQHIQKHVAG-KKLLLVLDDVW 293 (923)
Q Consensus 264 -~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~ 293 (923)
....+.+.+...+.+.+.. +.-++|+|.+-
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112234555666666653 56689999873
No 327
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.40 E-value=0.061 Score=58.03 Aligned_cols=130 Identities=12% Similarity=0.086 Sum_probs=68.4
Q ss_pred eecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcc-cccccceEEEEEeCCcccHHHHHHHHHH
Q 039167 179 IFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGD-VEKNFEKRIWVCVSDPFDEFRIARAIIE 257 (923)
Q Consensus 179 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 257 (923)
++|....+.++.+.+..-.. ....|.|+|..|+||+++|+.+++... .... .+-|+++.-. ...+..
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~p---fv~vnc~~~~--~~~l~~--- 68 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYLSKRWQGP---LVKLNCAALS--ENLLDS--- 68 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHhcCccCCC---eEEEeCCCCC--hHHHHH---
Confidence 46777777777776654322 345689999999999999999986321 1122 2333433221 122222
Q ss_pred HHhCCCCCC-cCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCC-----------CCcEEEEEecc
Q 039167 258 ALTGCLPNF-VEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCL-----------YGSKILITTRK 322 (923)
Q Consensus 258 ~l~~~~~~~-~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~ 322 (923)
.+.+..... ...... .....-....=.|+||+|..-.......+...+..+. ...|||.||..
T Consensus 69 ~lfG~~~g~~~ga~~~--~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~ 143 (329)
T TIGR02974 69 ELFGHEAGAFTGAQKR--HQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNA 143 (329)
T ss_pred HHhccccccccCcccc--cCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechh
Confidence 121211100 000000 0000112234568999997666555666666665432 23488888854
No 328
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.39 E-value=0.17 Score=46.85 Aligned_cols=78 Identities=14% Similarity=0.286 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHhHhhhhhhHH
Q 039167 3 DAIISPLLQQLTTMAAEETKEQVRLVTGVGKEVKKLSRNLQAIQAVLHDVEKRQV-KEESVRLWLDQLRDVSYNMEDVLE 81 (923)
Q Consensus 3 ~~~v~~v~~~l~~~~~~~~~~e~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~-~~~~~~~wl~~lr~~~~d~ed~ld 81 (923)
.|+++++++.|.. .+.+.......++.-+++|...+++|..++++.+.... -+..-+.-++++.+...+++++++
T Consensus 8 gaalG~~~~eLlk----~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~ 83 (147)
T PF05659_consen 8 GAALGAVFGELLK----AVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVE 83 (147)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 3455555555555 67777777778888999999999999999999887532 233336778889999999999988
Q ss_pred HHH
Q 039167 82 EWS 84 (923)
Q Consensus 82 ~~~ 84 (923)
.|.
T Consensus 84 k~s 86 (147)
T PF05659_consen 84 KCS 86 (147)
T ss_pred Hhc
Confidence 774
No 329
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.38 E-value=0.4 Score=50.79 Aligned_cols=59 Identities=12% Similarity=0.136 Sum_probs=37.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHH
Q 039167 178 EIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEF 249 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 249 (923)
.++=..+....+...+.. .+.|.|.|++|+||||+|+.+... ....| +.|..+...+..
T Consensus 46 ~y~f~~~~~~~vl~~l~~--------~~~ilL~G~pGtGKTtla~~lA~~--l~~~~---~rV~~~~~l~~~ 104 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAY--------DRRVMVQGYHGTGKSTHIEQIAAR--LNWPC---VRVNLDSHVSRI 104 (327)
T ss_pred CccCCHHHHHHHHHHHhc--------CCcEEEEeCCCChHHHHHHHHHHH--HCCCe---EEEEecCCCChh
Confidence 344444555667777642 235899999999999999999873 33222 344555444443
No 330
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.37 E-value=0.03 Score=59.28 Aligned_cols=83 Identities=22% Similarity=0.205 Sum_probs=52.9
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCC-----CCCCcCHHHHHHHHH
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGC-----LPNFVEFQSLMQHIQ 277 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~l~ 277 (923)
.-+++-|+|++|+||||||.++... ....-..++|++....++.. .+++++.. .......++....+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 5679999999999999999887663 33333567788777666553 23444321 111223455555555
Q ss_pred HHhc-CCceEEEecCC
Q 039167 278 KHVA-GKKLLLVLDDV 292 (923)
Q Consensus 278 ~~l~-~kr~LlVlDdv 292 (923)
...+ +.--+||+|.|
T Consensus 127 ~li~~~~~~lIVIDSv 142 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSV 142 (321)
T ss_pred HHhhccCCcEEEEcch
Confidence 5543 45678999987
No 331
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.16 Score=60.49 Aligned_cols=122 Identities=15% Similarity=0.200 Sum_probs=77.2
Q ss_pred ceecchhhHHHHHHHHhcCCCCCC--CCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHH
Q 039167 178 EIFGRKDEKNELVDRLICENSIEQ--KGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAI 255 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~~~~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 255 (923)
.++|.++.+..|.+.+........ .....+.+.|+.|+|||.||+++.. .+-+..+..+-+++|. ... +
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse------~~e-v 633 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSE------FQE-V 633 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhh------hhh-h
Confidence 578888888888888875543112 2567888999999999999999887 3444445555554443 222 2
Q ss_pred HHHHhCCCCCCcCHHHHHHHHHHHhcCCce-EEEecCCCCCChhhHHHhHHhhhcC
Q 039167 256 IEALTGCLPNFVEFQSLMQHIQKHVAGKKL-LLVLDDVWNENFHKWEQFNNCLKNC 310 (923)
Q Consensus 256 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~ 310 (923)
..+.+.++..... +....|.+.++.++| +|.||||...+.+....+...+..+
T Consensus 634 -skligsp~gyvG~-e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 634 -SKLIGSPPGYVGK-EEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRG 687 (898)
T ss_pred -hhccCCCcccccc-hhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcC
Confidence 2232222222222 223467777777766 7778999766666666666666654
No 332
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.34 E-value=0.2 Score=51.57 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=18.3
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 039167 206 IISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~ 226 (923)
+..|+|++|+|||+||..+.-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999988765
No 333
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.33 E-value=0.2 Score=49.05 Aligned_cols=53 Identities=11% Similarity=0.149 Sum_probs=33.0
Q ss_pred HHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcC-CCCcEEEEEecchHHHH
Q 039167 275 HIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNC-LYGSKILITTRKEAVAR 327 (923)
Q Consensus 275 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~ 327 (923)
.+.+.+-.++-++++|+.-.. +....+.+...+... ..|..||++|.+.....
T Consensus 114 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 168 (182)
T cd03215 114 VLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELL 168 (182)
T ss_pred HHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 356667778889999987332 334445555555432 23667899988865443
No 334
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.31 E-value=0.19 Score=56.45 Aligned_cols=131 Identities=18% Similarity=0.303 Sum_probs=73.0
Q ss_pred CCEEEEEEecCCChHHH-HHHHHhcCcccccccceEEEEEeCCccc--HHHHHHHHHHHHhCCCCC--------------
Q 039167 203 GPHIISLVGMGGIGKTT-LAQFAYNNGDVEKNFEKRIWVCVSDPFD--EFRIARAIIEALTGCLPN-------------- 265 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~-------------- 265 (923)
.-.||.|+|..|.|||| ||+.+|.+..... --|-+.++-. ...+.+.+.++++.....
T Consensus 370 ~n~vvvivgETGSGKTTQl~QyL~edGY~~~-----GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~ 444 (1042)
T KOG0924|consen 370 ENQVVVIVGETGSGKTTQLAQYLYEDGYADN-----GMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSE 444 (1042)
T ss_pred hCcEEEEEecCCCCchhhhHHHHHhcccccC-----CeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCC
Confidence 44699999999999987 6688887532211 1344444443 445677777777543211
Q ss_pred ------CcCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhh---cCCCCcEEEEEecchH---HHHHhcccc
Q 039167 266 ------FVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLK---NCLYGSKILITTRKEA---VARIMGSTN 333 (923)
Q Consensus 266 ------~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~---~~~~gs~iivTtR~~~---v~~~~~~~~ 333 (923)
..|.--+...|.+..-.|=-.||+|...+.+ -.-+.+...+. .....-|+||||-.-+ .+..+|...
T Consensus 445 ~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERs-lNtDilfGllk~~larRrdlKliVtSATm~a~kf~nfFgn~p 523 (1042)
T KOG0924|consen 445 DTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERS-LNTDILFGLLKKVLARRRDLKLIVTSATMDAQKFSNFFGNCP 523 (1042)
T ss_pred ceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcc-cchHHHHHHHHHHHHhhccceEEEeeccccHHHHHHHhCCCc
Confidence 0112223333444444455689999986643 23333333332 2234679999997643 334445444
Q ss_pred eEeCCC
Q 039167 334 IISVNV 339 (923)
Q Consensus 334 ~~~l~~ 339 (923)
.+.+++
T Consensus 524 ~f~IpG 529 (1042)
T KOG0924|consen 524 QFTIPG 529 (1042)
T ss_pred eeeecC
Confidence 444443
No 335
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.30 E-value=0.24 Score=49.10 Aligned_cols=119 Identities=14% Similarity=0.129 Sum_probs=61.3
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEE---------------eCCcc---cHHHHHHHHHHHHhCCCC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVC---------------VSDPF---DEFRIARAIIEALTGCLP 264 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---------------~s~~~---~~~~~~~~i~~~l~~~~~ 264 (923)
.-.+++|.|+.|.|||||.+.+..-.. .......+++. +.+.. ....+...+...... .
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~~-~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~--~ 110 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRRT-GLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL--R 110 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC-CCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHh--c
Confidence 346899999999999999999987420 01122222211 11111 001122222110000 0
Q ss_pred CCcCHHHHHHHHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcC-CCCcEEEEEecchH
Q 039167 265 NFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNC-LYGSKILITTRKEA 324 (923)
Q Consensus 265 ~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~ 324 (923)
.....+...-.+.+.+..++-++++|+.-.. +....+.+...+... ..|.-||++|.+..
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 1111222233456666777889999987332 334455555555432 23677888888753
No 336
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.28 E-value=0.013 Score=53.69 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=19.3
Q ss_pred EEEEecCCChHHHHHHHHhcC
Q 039167 207 ISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 207 i~I~G~gGiGKTtLa~~v~~~ 227 (923)
|+|.|+.|+||||+|+++...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999874
No 337
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.27 E-value=0.24 Score=50.30 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=33.1
Q ss_pred HHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcCCCCcEEEEEecchHHHHH
Q 039167 276 IQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNCLYGSKILITTRKEAVARI 328 (923)
Q Consensus 276 l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 328 (923)
+.+.+..++-++++|+.-.. +....+.+...+.....+..||++|.+......
T Consensus 144 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~ 197 (220)
T cd03263 144 LAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEA 197 (220)
T ss_pred HHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH
Confidence 55566678899999987332 334445555555433334568888888765543
No 338
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.27 E-value=0.0018 Score=64.34 Aligned_cols=99 Identities=26% Similarity=0.268 Sum_probs=57.6
Q ss_pred cCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccch--hhh
Q 039167 530 LRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPE--TLC 607 (923)
Q Consensus 530 ~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~--~i~ 607 (923)
+.+.+.|++.+|.+.++. ...+++.|.||.|+.|. +..+ +.+..+++|+.|.|+.|. |..+-+ -+.
T Consensus 18 l~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNk-------IssL-~pl~rCtrLkElYLRkN~-I~sldEL~YLk 85 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNK-------ISSL-APLQRCTRLKELYLRKNC-IESLDELEYLK 85 (388)
T ss_pred HHHhhhhcccCCCccHHH---HHHhcccceeEEeeccc-------cccc-hhHHHHHHHHHHHHHhcc-cccHHHHHHHh
Confidence 445666777777665543 34677777777777665 4444 335667777777777776 555443 245
Q ss_pred CCCCCcEEecCCCccccccCc-----cccCCCCCCEEe
Q 039167 608 ELYNLEHLNVNCCVKLRELPQ-----GIGRLRKLMYLD 640 (923)
Q Consensus 608 ~L~~L~~L~L~~~~~l~~lp~-----~i~~L~~L~~L~ 640 (923)
+|++|++|-|..|.....-+. -+.-|++|+.||
T Consensus 86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 86 NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 666666666665543333222 134455666554
No 339
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.24 E-value=0.24 Score=52.17 Aligned_cols=54 Identities=19% Similarity=0.174 Sum_probs=35.9
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHH
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEAL 259 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 259 (923)
.-.++.|.|.+|+||||++.++.... ...+=..++|++... +..++...+...+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~-~~~~g~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDL-ITQHGVRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-HHhcCceEEEEEccc--CHHHHHHHHHHHH
Confidence 34588899999999999998886632 122124577887665 3455565555544
No 340
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.22 E-value=0.039 Score=58.51 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=23.8
Q ss_pred CCCEEEEEEecCCChHHHHHHHHhcC
Q 039167 202 KGPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
..+..++|+|++|.|||.+|+++++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999994
No 341
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.20 E-value=0.05 Score=54.15 Aligned_cols=121 Identities=16% Similarity=0.111 Sum_probs=58.6
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCH---HHHHHHHHHH
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEF---QSLMQHIQKH 279 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~---~~~~~~l~~~ 279 (923)
..+++.|.|+.|.||||+.+.+....-.. ....+|.+.. .. -.+...|...++......... ..-...+...
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~~la---~~G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~i 102 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLAIMA---QIGCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYI 102 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHH---HcCCCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHH
Confidence 34789999999999999998886431110 0111111110 00 011222222222111000010 1111112222
Q ss_pred --hcCCceEEEecCCCCC-ChhhHH----HhHHhhhcCCCCcEEEEEecchHHHHHhc
Q 039167 280 --VAGKKLLLVLDDVWNE-NFHKWE----QFNNCLKNCLYGSKILITTRKEAVARIMG 330 (923)
Q Consensus 280 --l~~kr~LlVlDdv~~~-~~~~~~----~l~~~l~~~~~gs~iivTtR~~~v~~~~~ 330 (923)
+..++-|+++|..... +..+.. .+...+.. .|+.+|+||...+++..+.
T Consensus 103 l~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 103 LDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 2357889999997432 122211 22222322 2789999999988887654
No 342
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.17 E-value=0.044 Score=50.39 Aligned_cols=44 Identities=25% Similarity=0.296 Sum_probs=31.7
Q ss_pred EEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCC
Q 039167 206 IISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGC 262 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 262 (923)
+|.|.|++|.||||+|+.+.++.-. .| + +.-.++++++++.+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl--~~-----v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL--KL-----V------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCC--ce-----e------eccHHHHHHHHHcCCC
Confidence 6899999999999999999984221 11 2 2335777888777653
No 343
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.14 E-value=0.021 Score=54.95 Aligned_cols=91 Identities=19% Similarity=0.192 Sum_probs=52.0
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCcccc-cccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDVE-KNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAG 282 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 282 (923)
..++.+.|+.|+|||.||+.+.+ .+. +.....+-++++.-....+.-..+ ..+....+.. . . ..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~~~~~~~~~~~-~~l~~~~~~~--v-------~---~~ 67 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEYSEGDDVESSV-SKLLGSPPGY--V-------G---AE 67 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGHCSHHHCSCHC-HHHHHHTTCH--H-------H---HH
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcccccchHHhhh-hhhhhcccce--e-------e---cc
Confidence 56889999999999999999987 333 344455666665433311111111 1111111110 0 0 01
Q ss_pred CceEEEecCCCCCCh-----------hhHHHhHHhhhc
Q 039167 283 KKLLLVLDDVWNENF-----------HKWEQFNNCLKN 309 (923)
Q Consensus 283 kr~LlVlDdv~~~~~-----------~~~~~l~~~l~~ 309 (923)
..-+|+||++..... ..|..+...+..
T Consensus 68 ~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~ 105 (171)
T PF07724_consen 68 EGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEG 105 (171)
T ss_dssp HHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcc
Confidence 112999999976666 667777777754
No 344
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.14 E-value=0.34 Score=48.88 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.4
Q ss_pred CEEEEEEecCCChHHHHHHHHhcC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
-.+++|+|+.|.|||||++.+...
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 458999999999999999999764
No 345
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.13 E-value=0.24 Score=49.69 Aligned_cols=52 Identities=15% Similarity=0.294 Sum_probs=32.1
Q ss_pred HHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcC-CCCcEEEEEecchHHHH
Q 039167 276 IQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNC-LYGSKILITTRKEAVAR 327 (923)
Q Consensus 276 l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~ 327 (923)
+.+.+-.++-++++|+.-.. +....+.+...+... ..|.-||++|.+.....
T Consensus 137 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~ 190 (205)
T cd03226 137 IAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLA 190 (205)
T ss_pred HHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 55566677889999986332 334444555555432 24667888888866544
No 346
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.13 E-value=0.18 Score=50.20 Aligned_cols=121 Identities=17% Similarity=0.155 Sum_probs=62.3
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCc--c-ccc--ccc--------------eEEEEEeCCcccH--HHHHHHHHHHHhC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNG--D-VEK--NFE--------------KRIWVCVSDPFDE--FRIARAIIEALTG 261 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~--~-~~~--~F~--------------~~~wv~~s~~~~~--~~~~~~i~~~l~~ 261 (923)
.-.+++|+|..|.|||||.+.+.... . ..+ .|+ ..++. +.+.... ......++...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~-v~q~~~~~~~~~~~~~l~~~-- 101 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFL-AFQYPPEIPGVKNADFLRYV-- 101 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEE-eecChhhccCccHHHHHhhc--
Confidence 34689999999999999999998741 1 111 010 00111 1111100 00111111110
Q ss_pred CCCCCcCHHHHHHHHHHHhcCCceEEEecCCCC-CChhhHHHhHHhhhcC-CCCcEEEEEecchHHHH
Q 039167 262 CLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWN-ENFHKWEQFNNCLKNC-LYGSKILITTRKEAVAR 327 (923)
Q Consensus 262 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~ 327 (923)
...-...+...-.+.+.+-.++-++++|+.-. -+....+.+...+... ..|.-||++|.+.....
T Consensus 102 -~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 102 -NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 01112222333446667777888999998732 2334445555555432 23667888888876655
No 347
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.13 E-value=0.057 Score=57.52 Aligned_cols=57 Identities=21% Similarity=0.194 Sum_probs=40.2
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccc----cccceEEEEEeCCcccHHHHHHHHHHHHh
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVE----KNFEKRIWVCVSDPFDEFRIARAIIEALT 260 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 260 (923)
.-.++-|+|++|+|||+|+.+++-..... ..=..++|++....|+++++.+ +++.++
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g 155 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFG 155 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 45789999999999999997765321211 1123688999998888887654 455554
No 348
>PRK09354 recA recombinase A; Provisional
Probab=95.11 E-value=0.066 Score=57.27 Aligned_cols=83 Identities=22% Similarity=0.206 Sum_probs=53.9
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCC-----CCCCcCHHHHHHHHH
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGC-----LPNFVEFQSLMQHIQ 277 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~l~ 277 (923)
.-+++-|+|++|+||||||.++... ....-..++|+.....++.. .++.++.. .......++....+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 5679999999999999999887653 33334567899888777753 33444322 111223455555555
Q ss_pred HHhc-CCceEEEecCC
Q 039167 278 KHVA-GKKLLLVLDDV 292 (923)
Q Consensus 278 ~~l~-~kr~LlVlDdv 292 (923)
..++ ++--+||+|-|
T Consensus 132 ~li~s~~~~lIVIDSv 147 (349)
T PRK09354 132 TLVRSGAVDLIVVDSV 147 (349)
T ss_pred HHhhcCCCCEEEEeCh
Confidence 5543 45668999987
No 349
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.08 E-value=0.2 Score=51.01 Aligned_cols=49 Identities=14% Similarity=0.125 Sum_probs=30.8
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHH
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAI 255 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 255 (923)
.-.++.|.|..|+||||+|.++.... .+.. ..+++++... +..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 34599999999999999986654421 1222 3456666333 445555554
No 350
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.06 E-value=0.12 Score=53.61 Aligned_cols=89 Identities=24% Similarity=0.211 Sum_probs=55.6
Q ss_pred CCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCC-CCCCcCHH---HHHHHHH
Q 039167 202 KGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGC-LPNFVEFQ---SLMQHIQ 277 (923)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~-~~~~~~~~---~~~~~l~ 277 (923)
+.-+++=|+|+.|.||||+|.+++-. .+..-..++|++.-..+++..+..-....+..- .....+.+ +....+.
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 46689999999999999999777653 444444889999999898876543332212211 11122223 2333333
Q ss_pred HHhcCCceEEEecCC
Q 039167 278 KHVAGKKLLLVLDDV 292 (923)
Q Consensus 278 ~~l~~kr~LlVlDdv 292 (923)
+....+--|+|+|.+
T Consensus 136 ~~~~~~i~LvVVDSv 150 (279)
T COG0468 136 RSGAEKIDLLVVDSV 150 (279)
T ss_pred HhccCCCCEEEEecC
Confidence 333344568888887
No 351
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.06 E-value=0.19 Score=49.34 Aligned_cols=21 Identities=24% Similarity=0.301 Sum_probs=19.5
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 039167 206 IISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~ 226 (923)
+|.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 352
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.03 E-value=0.28 Score=50.39 Aligned_cols=61 Identities=13% Similarity=0.127 Sum_probs=36.4
Q ss_pred HHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcC--CCCcEEEEEecchHHHHHhcccceEeC
Q 039167 275 HIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNC--LYGSKILITTRKEAVARIMGSTNIISV 337 (923)
Q Consensus 275 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtR~~~v~~~~~~~~~~~l 337 (923)
.+.+.+-.++-++++|+.-.. +....+.+...+... ..|..||++|.+.+.... .++++.+
T Consensus 142 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~--~d~i~~l 205 (236)
T TIGR03864 142 EIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA--DDRLVVL 205 (236)
T ss_pred HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh--CCEEEEE
Confidence 355666678889999987332 334445555555432 236678888888765543 3444444
No 353
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.02 E-value=0.011 Score=34.88 Aligned_cols=19 Identities=26% Similarity=0.700 Sum_probs=10.1
Q ss_pred CcEEeccCCCCccccchhhh
Q 039167 588 LKYLNLANQMEIERLPETLC 607 (923)
Q Consensus 588 L~~L~L~~~~~l~~lp~~i~ 607 (923)
|++|+|++|. ++.+|++++
T Consensus 2 L~~Ldls~n~-l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNN-LTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSE-ESEEGTTTT
T ss_pred ccEEECCCCc-CEeCChhhc
Confidence 5555555554 555555443
No 354
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.02 E-value=0.23 Score=49.14 Aligned_cols=119 Identities=20% Similarity=0.158 Sum_probs=59.0
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCcc---cccc--cc----------eEEEEEeCCc-ccHHHHHHHHHHHHhCCCCCCc
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGD---VEKN--FE----------KRIWVCVSDP-FDEFRIARAIIEALTGCLPNFV 267 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~--F~----------~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~ 267 (923)
-.+++|+|..|.|||||++.+..... ..+. |+ ...|+.-... +....+...+.-..... .-.
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~LS 110 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--GLS 110 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHh--cCC
Confidence 46899999999999999999986311 1111 11 1122211110 11111222221110000 111
Q ss_pred CHHHHHHHHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcC-CCCcEEEEEecchH
Q 039167 268 EFQSLMQHIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNC-LYGSKILITTRKEA 324 (923)
Q Consensus 268 ~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~ 324 (923)
..+...-.+.+.+..++-++++|+.-.. +......+...+... ..|..||++|.+.+
T Consensus 111 gGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 111 VEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred HHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence 1222233355666677788999976332 233344444444332 23667888888754
No 355
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.02 E-value=0.14 Score=49.80 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.2
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
...+|.|+|++|+||||+|+++...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4469999999999999999999874
No 356
>PRK10867 signal recognition particle protein; Provisional
Probab=95.00 E-value=0.099 Score=58.03 Aligned_cols=24 Identities=42% Similarity=0.567 Sum_probs=20.6
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.+.+|.++|.+|+||||.|..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 578999999999999998866655
No 357
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.00 E-value=0.093 Score=56.56 Aligned_cols=56 Identities=25% Similarity=0.281 Sum_probs=39.4
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccc----cceEEEEEeCCcccHHHHHHHHHHHH
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKN----FEKRIWVCVSDPFDEFRIARAIIEAL 259 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~~~~~~i~~~l 259 (923)
.-.++-|+|++|+|||+++.+++-....... =..++|++....+++.++.+. ++.+
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~-~~~~ 160 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQM-AEAL 160 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHH-HHHc
Confidence 5678999999999999999888653221111 147889999888887766543 3443
No 358
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.99 E-value=0.26 Score=50.64 Aligned_cols=61 Identities=15% Similarity=0.275 Sum_probs=37.3
Q ss_pred HHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcCCCCcEEEEEecchHHHHHhcccceEeC
Q 039167 275 HIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNCLYGSKILITTRKEAVARIMGSTNIISV 337 (923)
Q Consensus 275 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l 337 (923)
.+.+.+-.++-++++|+.-.. +....+.+...+.....|..||++|.+...... .++++.+
T Consensus 147 ~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~--~d~~~~l 208 (236)
T cd03253 147 AIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN--ADKIIVL 208 (236)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh--CCEEEEE
Confidence 356667778899999987432 334445555555433336678888888766543 3344443
No 359
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.96 E-value=0.2 Score=47.70 Aligned_cols=117 Identities=19% Similarity=0.114 Sum_probs=62.1
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCcccccccceEE--EEEeCCcccHHHHHHHHHHHHh-----CC----CCCC-cC---
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRI--WVCVSDPFDEFRIARAIIEALT-----GC----LPNF-VE--- 268 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~--wv~~s~~~~~~~~~~~i~~~l~-----~~----~~~~-~~--- 268 (923)
...|-|++..|.||||.|-.+.-. .....+...+ |+.-.........+... .+. .. ..+. .+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~r-a~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALR-ALGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHH-HHHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHH
Confidence 357888888999999999666542 1222232211 33333223333444332 111 00 0010 11
Q ss_pred HHHHHHHHHHHhcC-CceEEEecCCCC---CChhhHHHhHHhhhcCCCCcEEEEEecch
Q 039167 269 FQSLMQHIQKHVAG-KKLLLVLDDVWN---ENFHKWEQFNNCLKNCLYGSKILITTRKE 323 (923)
Q Consensus 269 ~~~~~~~l~~~l~~-kr~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 323 (923)
..+.....++.+.. +-=|+|||.+-. ...-+.+.+...+.....+.-||+|-|+.
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 11122233444444 445999998821 11234567777787777788999999974
No 360
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.96 E-value=0.25 Score=50.14 Aligned_cols=52 Identities=15% Similarity=0.296 Sum_probs=32.0
Q ss_pred HHHHhcCCceEEEecCCCC-CChhhHHHhHHhhhcCCCCcEEEEEecchHHHH
Q 039167 276 IQKHVAGKKLLLVLDDVWN-ENFHKWEQFNNCLKNCLYGSKILITTRKEAVAR 327 (923)
Q Consensus 276 l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 327 (923)
+.+.+-.++-++++|+.-. -+......+...+.....+..||++|.+.+...
T Consensus 151 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~ 203 (220)
T cd03245 151 LARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLD 203 (220)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH
Confidence 4455566778999997632 233444555555554333357888888876653
No 361
>PRK13949 shikimate kinase; Provisional
Probab=94.95 E-value=0.19 Score=48.40 Aligned_cols=22 Identities=45% Similarity=0.474 Sum_probs=20.1
Q ss_pred EEEEEecCCChHHHHHHHHhcC
Q 039167 206 IISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
-|.|+|+.|+||||+++.+.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 362
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=94.95 E-value=0.19 Score=50.23 Aligned_cols=61 Identities=13% Similarity=0.207 Sum_probs=36.9
Q ss_pred HHHHHhcCCceEEEecCCCCC-ChhhHH-HhHHhhhcCC-C-CcEEEEEecchHHHHHhcccceEeC
Q 039167 275 HIQKHVAGKKLLLVLDDVWNE-NFHKWE-QFNNCLKNCL-Y-GSKILITTRKEAVARIMGSTNIISV 337 (923)
Q Consensus 275 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~-~l~~~l~~~~-~-gs~iivTtR~~~v~~~~~~~~~~~l 337 (923)
.+.+.+..+.-++++|+.-.. +....+ .+...+.... . |.-||++|.+.+.... .+.++.+
T Consensus 131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~--~d~i~~l 195 (204)
T cd03240 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA--ADHIYRV 195 (204)
T ss_pred HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh--CCEEEEE
Confidence 355666788899999988432 223334 4555554332 2 5568888888776543 3344444
No 363
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.93 E-value=0.058 Score=58.59 Aligned_cols=103 Identities=17% Similarity=0.221 Sum_probs=61.0
Q ss_pred CCCEEEEEEecCCChHHHHHHHHhcCccc----ccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHH
Q 039167 202 KGPHIISLVGMGGIGKTTLAQFAYNNGDV----EKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQ 277 (923)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 277 (923)
...+=+-|||..|.|||.|.-.+|+...+ +-||. .....+-+.+....... .....+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------------~Fm~~vh~~l~~~~~~~----~~l~~va 121 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------------EFMLDVHSRLHQLRGQD----DPLPQVA 121 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------------HHHHHHHHHHHHHhCCC----ccHHHHH
Confidence 35778999999999999999999986433 22332 22223333322211111 1133455
Q ss_pred HHhcCCceEEEecCCCCCChhhHHHhHHhhhcC-CCCcEEEEEecch
Q 039167 278 KHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNC-LYGSKILITTRKE 323 (923)
Q Consensus 278 ~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTtR~~ 323 (923)
+.+.++..||.+|.+.-.+..+--.+...+..- ..|. |||+|.|.
T Consensus 122 ~~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gv-vlVaTSN~ 167 (362)
T PF03969_consen 122 DELAKESRLLCFDEFQVTDIADAMILKRLFEALFKRGV-VLVATSNR 167 (362)
T ss_pred HHHHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCC-EEEecCCC
Confidence 666777889999988666655554555555432 3455 55555553
No 364
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.35 Score=45.98 Aligned_cols=53 Identities=13% Similarity=0.179 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhh-cCCCCcEEEEEecch
Q 039167 271 SLMQHIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLK-NCLYGSKILITTRKE 323 (923)
Q Consensus 271 ~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~-~~~~gs~iivTtR~~ 323 (923)
+..-.+.+..-.++-|-+||..... +...-..+...+. ....|..||.||..+
T Consensus 136 qRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~ 190 (209)
T COG4133 136 QRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQP 190 (209)
T ss_pred HHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCc
Confidence 3344466777789999999988543 2222233333333 334677899999864
No 365
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.92 E-value=0.022 Score=57.39 Aligned_cols=25 Identities=44% Similarity=0.663 Sum_probs=22.9
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
+..+|+|.|.+|+||||||+.+...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999999999873
No 366
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.90 E-value=0.3 Score=48.88 Aligned_cols=54 Identities=13% Similarity=0.199 Sum_probs=32.6
Q ss_pred HHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcC-CCCcEEEEEecchHHHHHh
Q 039167 276 IQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNC-LYGSKILITTRKEAVARIM 329 (923)
Q Consensus 276 l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~~~ 329 (923)
+.+.+-...-++++|+--.. +....+.+...+... ..|..||++|.+......+
T Consensus 140 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~ 195 (204)
T PRK13538 140 LARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASD 195 (204)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccC
Confidence 45566677889999976322 334455555555432 2355788888876555443
No 367
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=0.25 Score=57.70 Aligned_cols=180 Identities=16% Similarity=0.148 Sum_probs=97.2
Q ss_pred ceecchhh---HHHHHHHHhcCCCC---CCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHH
Q 039167 178 EIFGRKDE---KNELVDRLICENSI---EQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRI 251 (923)
Q Consensus 178 ~~vGr~~~---~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 251 (923)
++.|-++. +.+++++|..++.. +..-++=+-++|++|.|||-||++++-. ..-. |+++|..-
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGE--AgVP-----F~svSGSE----- 379 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AGVP-----FFSVSGSE----- 379 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcc--cCCc-----eeeechHH-----
Confidence 46777654 55566666544321 2234667899999999999999999984 3223 34444311
Q ss_pred HHHHHHHHhCCCCCCcCHHHHHHHHH-HHhcCCceEEEecCCCCC------------C---hhhHHHhHHhhhcCCCCc-
Q 039167 252 ARAIIEALTGCLPNFVEFQSLMQHIQ-KHVAGKKLLLVLDDVWNE------------N---FHKWEQFNNCLKNCLYGS- 314 (923)
Q Consensus 252 ~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdv~~~------------~---~~~~~~l~~~l~~~~~gs- 314 (923)
..+-+.+. . ....+.+. ..=...+..|.+|++... + ...+.++..-+.....++
T Consensus 380 ---FvE~~~g~-----~-asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~ 450 (774)
T KOG0731|consen 380 ---FVEMFVGV-----G-ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKG 450 (774)
T ss_pred ---HHHHhccc-----c-hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCc
Confidence 11111110 0 11112222 222345778888877321 0 122333333333222222
Q ss_pred -EEEEEecchHHHHHh----cc-cceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHH
Q 039167 315 -KILITTRKEAVARIM----GS-TNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLA 382 (923)
Q Consensus 315 -~iivTtR~~~v~~~~----~~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 382 (923)
-++-+|+..++.... |. +..+.++.-+.....+.|..++-.-... .+..++++ |+...-|.+=|
T Consensus 451 vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~---~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 451 VIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD---DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred EEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC---cchhhHHH-HHhcCCCCcHH
Confidence 334456655554321 22 5678888888888899998877433322 34455566 88888777644
No 368
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.89 E-value=0.019 Score=45.86 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHhcC
Q 039167 206 IISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
+|+|.|..|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998874
No 369
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.89 E-value=0.089 Score=56.52 Aligned_cols=57 Identities=23% Similarity=0.165 Sum_probs=40.5
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCccc----ccccceEEEEEeCCcccHHHHHHHHHHHHh
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDV----EKNFEKRIWVCVSDPFDEFRIARAIIEALT 260 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 260 (923)
.-.++-|+|.+|+|||+|+.+++-.... ...-..++|++....|++.++.+ +++.++
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g 185 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFG 185 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 5578889999999999999877532121 11124688999999898887655 455554
No 370
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.88 E-value=0.28 Score=48.92 Aligned_cols=54 Identities=13% Similarity=0.123 Sum_probs=33.0
Q ss_pred HHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcC-CCCcEEEEEecchHHHHH
Q 039167 275 HIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNC-LYGSKILITTRKEAVARI 328 (923)
Q Consensus 275 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~~ 328 (923)
.+.+.+..++-++++|+.-.. +...-+.+...+... ..|..||++|.+......
T Consensus 137 ~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 192 (200)
T PRK13540 137 ALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK 192 (200)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc
Confidence 355566677889999987332 233344455555432 246779999987655443
No 371
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.85 E-value=0.31 Score=50.31 Aligned_cols=125 Identities=12% Similarity=0.035 Sum_probs=64.0
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCccc-cc--ccce--EEEEEeC----CcccHHHHH--------------HHHHHHHh
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDV-EK--NFEK--RIWVCVS----DPFDEFRIA--------------RAIIEALT 260 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~--~F~~--~~wv~~s----~~~~~~~~~--------------~~i~~~l~ 260 (923)
-.+++|+|..|+|||||++.+...... .+ .++. +.++.-. ...+..+.+ ..+++.++
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~ 104 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQ 104 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcC
Confidence 458999999999999999999774221 11 1111 2222110 011222222 12222222
Q ss_pred CC-----CCCCcC-HHHHHHHHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcC--CCCcEEEEEecchHHHHH
Q 039167 261 GC-----LPNFVE-FQSLMQHIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNC--LYGSKILITTRKEAVARI 328 (923)
Q Consensus 261 ~~-----~~~~~~-~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtR~~~v~~~ 328 (923)
.. ....-+ .+...-.+...|..+.-++++|+.-.. +...-..+...+... ..|.-||++|.+...+..
T Consensus 105 l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~ 181 (246)
T cd03237 105 IEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDY 181 (246)
T ss_pred CHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 11 011111 222233366677788899999987322 223334444444432 236678899988665543
No 372
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.84 E-value=0.27 Score=49.56 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=32.0
Q ss_pred HHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcCCCCcEEEEEecchHHHH
Q 039167 275 HIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNCLYGSKILITTRKEAVAR 327 (923)
Q Consensus 275 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 327 (923)
.+.+.+..++-++++|+--.. +...-+.+...+.....+.-||++|.+.....
T Consensus 140 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~ 193 (211)
T cd03264 140 GIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVE 193 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH
Confidence 355566778889999976322 23334445555543322456888888766554
No 373
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.84 E-value=0.13 Score=59.46 Aligned_cols=134 Identities=13% Similarity=0.178 Sum_probs=76.1
Q ss_pred CCceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHH
Q 039167 176 ESEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAI 255 (923)
Q Consensus 176 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 255 (923)
...++|+...+.++.+.+..-. .....|.|+|..|+|||++|+.+++... ..-...+.|+++.-.+ ..+.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a----~~~~pVlI~Ge~GtGK~~~A~~ih~~s~--r~~~p~v~v~c~~~~~--~~~e-- 255 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVA----ASDLNVLILGETGVGKELVARAIHAASP--RADKPLVYLNCAALPE--SLAE-- 255 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHHhCC--cCCCCeEEEEcccCCh--HHHH--
Confidence 4569999999998888876543 2455789999999999999999987421 1112334455443221 2211
Q ss_pred HHHHhCCCCCC-cC-HHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCC-----------CCcEEEEEecc
Q 039167 256 IEALTGCLPNF-VE-FQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCL-----------YGSKILITTRK 322 (923)
Q Consensus 256 ~~~l~~~~~~~-~~-~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~ 322 (923)
..+.+..... .. .......+. ....=-|+||+|..-.......+...+..+. ...|||.||..
T Consensus 256 -~~lfG~~~g~~~ga~~~~~g~~~---~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 256 -SELFGHVKGAFTGAISNRSGKFE---LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred -HHhcCccccccCCCcccCCcchh---hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC
Confidence 1222211110 00 000000111 1223347899997766666667777765432 14588888865
Q ss_pred h
Q 039167 323 E 323 (923)
Q Consensus 323 ~ 323 (923)
.
T Consensus 332 ~ 332 (509)
T PRK05022 332 D 332 (509)
T ss_pred C
Confidence 3
No 374
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.83 E-value=0.76 Score=48.54 Aligned_cols=157 Identities=11% Similarity=0.039 Sum_probs=90.1
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCc---c-----cccccceEEEEEe-CCcccHHHHHHHHHHHHhCCCCCCcCHHHHH
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNG---D-----VEKNFEKRIWVCV-SDPFDEFRIARAIIEALTGCLPNFVEFQSLM 273 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~---~-----~~~~F~~~~wv~~-s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 273 (923)
-.++.-++|..|.||+++|..+.+.. . ...|=+...++.. +......++. .+.+.+....
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~~---------- 85 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFSS---------- 85 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccCC----------
Confidence 45677799999999999998886531 0 0111112222221 1112222211 2222221100
Q ss_pred HHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecc-hHHHHH-hcccceEeCCCCChHHHHHHHHH
Q 039167 274 QHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRK-EAVARI-MGSTNIISVNVLSGMECWLVFES 351 (923)
Q Consensus 274 ~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~ 351 (923)
.-.+++=++|+|++...+......+...+...+..+.+|++|.+ ..+... .....++++.++++++..+.+..
T Consensus 86 -----~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 86 -----FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred -----cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHH
Confidence 00147778889998766666777888888877777777766644 444432 34578999999999999887765
Q ss_pred hhcCCCCccchhhHHHHHHHHHHhcCCChHHHHH
Q 039167 352 LAFVGKSMEERENLEKIGREITRKCKGLPLATKT 385 (923)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 385 (923)
.. . + ++.+..++...+|.--|+..
T Consensus 161 ~~---~----~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 161 KN---K----E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred cC---C----C---hhHHHHHHHHcCCHHHHHHH
Confidence 31 1 1 12255566666663344444
No 375
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=94.83 E-value=0.35 Score=49.22 Aligned_cols=61 Identities=11% Similarity=0.156 Sum_probs=37.1
Q ss_pred HHHHHhcCCceEEEecCCCC-CChhhHHHhHHhhhcC--CCCcEEEEEecchHHHHHhcccceEeC
Q 039167 275 HIQKHVAGKKLLLVLDDVWN-ENFHKWEQFNNCLKNC--LYGSKILITTRKEAVARIMGSTNIISV 337 (923)
Q Consensus 275 ~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~iivTtR~~~v~~~~~~~~~~~l 337 (923)
.+.+.+-.++-++++|+.-. -+....+.+...+... ..|..||++|.+.+.... .+.++.+
T Consensus 147 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~--~d~i~~l 210 (225)
T PRK10247 147 SLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINH--ADKVITL 210 (225)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHh--CCEEEEE
Confidence 35566667788999998732 2334455555555532 236678999988766542 3444444
No 376
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=94.81 E-value=0.31 Score=49.58 Aligned_cols=52 Identities=13% Similarity=0.211 Sum_probs=32.8
Q ss_pred HHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcC-CCCcEEEEEecchHHHH
Q 039167 276 IQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNC-LYGSKILITTRKEAVAR 327 (923)
Q Consensus 276 l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~ 327 (923)
+.+.+-..+-++++|+.-.. +....+.+...+... ..|..||++|.+.....
T Consensus 135 laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~ 188 (223)
T TIGR03740 135 IAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQ 188 (223)
T ss_pred HHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 45566677889999987332 334445555555432 23667899998876554
No 377
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.80 E-value=0.25 Score=48.99 Aligned_cols=22 Identities=23% Similarity=0.132 Sum_probs=20.3
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039167 205 HIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
++++|+|+.|.|||||.+.+.-
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999998864
No 378
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=0.095 Score=57.34 Aligned_cols=50 Identities=32% Similarity=0.370 Sum_probs=37.0
Q ss_pred ceecch---hhHHHHHHHHhcCCC---CCCCCCEEEEEEecCCChHHHHHHHHhcC
Q 039167 178 EIFGRK---DEKNELVDRLICENS---IEQKGPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 178 ~~vGr~---~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
++-|-| .|+++|+++|..+.. .+..=++-|.++|++|.|||-||++|+-.
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 455655 467788888865432 12334677999999999999999999984
No 379
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.80 E-value=0.033 Score=58.75 Aligned_cols=51 Identities=25% Similarity=0.376 Sum_probs=43.9
Q ss_pred CCceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhc
Q 039167 176 ESEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 176 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
...|+|.++.++++++.+.......+..-+++.++|+.|.||||||+.+.+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999766543456778999999999999999998877
No 380
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.78 E-value=0.024 Score=56.97 Aligned_cols=25 Identities=40% Similarity=0.496 Sum_probs=22.5
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
...+|+|+|++|+||||||+.+...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 5579999999999999999999873
No 381
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=94.77 E-value=0.57 Score=48.17 Aligned_cols=52 Identities=10% Similarity=0.275 Sum_probs=33.2
Q ss_pred HHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcCCCCcEEEEEecchHHHH
Q 039167 276 IQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNCLYGSKILITTRKEAVAR 327 (923)
Q Consensus 276 l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 327 (923)
+.+.+-.++-++++|+.-.. +....+.+...+.....|..||++|.+.+...
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~ 201 (237)
T cd03252 149 IARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK 201 (237)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH
Confidence 45555667789999987432 33444455555544334677899998876654
No 382
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.75 E-value=0.33 Score=50.49 Aligned_cols=53 Identities=25% Similarity=0.333 Sum_probs=32.4
Q ss_pred HHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcC--CCCcEEEEEecchHHHHH
Q 039167 276 IQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNC--LYGSKILITTRKEAVARI 328 (923)
Q Consensus 276 l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtR~~~v~~~ 328 (923)
+.+.+-.++-++++|+.-.. +...-..+...+... ..|..||++|.+.+....
T Consensus 139 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~ 194 (255)
T PRK11248 139 IARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVF 194 (255)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 45566677889999987322 233444455555432 236678888888765544
No 383
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=94.74 E-value=0.33 Score=51.89 Aligned_cols=52 Identities=15% Similarity=0.205 Sum_probs=32.5
Q ss_pred HHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcCCCCcEEEEEecchHHHH
Q 039167 276 IQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNCLYGSKILITTRKEAVAR 327 (923)
Q Consensus 276 l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 327 (923)
+.+.+-.++-+++||..-.. +...-+.+...+.....+..||+||.+...+.
T Consensus 144 la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~ 196 (301)
T TIGR03522 144 LAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVE 196 (301)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH
Confidence 55666778899999976321 33334444444443333567999999876443
No 384
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=94.73 E-value=0.38 Score=48.48 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=32.0
Q ss_pred HHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcC--CCCcEEEEEecchHHHH
Q 039167 276 IQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNC--LYGSKILITTRKEAVAR 327 (923)
Q Consensus 276 l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtR~~~v~~ 327 (923)
+.+.+..++-++++|+.-.. +....+.+...+... ..|..||++|.+.....
T Consensus 139 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~ 193 (213)
T TIGR01277 139 LARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDAR 193 (213)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 44556667889999987332 334445555555432 23667888888866543
No 385
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.73 E-value=0.24 Score=46.66 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHhcC
Q 039167 206 IISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
+|.|+|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999998873
No 386
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=94.71 E-value=0.063 Score=64.73 Aligned_cols=176 Identities=18% Similarity=0.179 Sum_probs=84.5
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCccc--------------ccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDV--------------EKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVE 268 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~--------------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~ 268 (923)
+.+++.|+|+.+.||||+.+.+.-..-. -..|+ .++..++..-++..-+..
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~-~i~~~ig~~~si~~~lSt-------------- 390 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFK-EIFADIGDEQSIEQSLST-------------- 390 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccc-eEEEecCCccchhhchhH--------------
Confidence 4578999999999999999888532000 01111 223333322222111111
Q ss_pred HHHHHHHHHHHhc--CCceEEEecCCCCC-ChhhHHHhHH-hhhc-CCCCcEEEEEecchHHHHHhcccc---eEeCCCC
Q 039167 269 FQSLMQHIQKHVA--GKKLLLVLDDVWNE-NFHKWEQFNN-CLKN-CLYGSKILITTRKEAVARIMGSTN---IISVNVL 340 (923)
Q Consensus 269 ~~~~~~~l~~~l~--~kr~LlVlDdv~~~-~~~~~~~l~~-~l~~-~~~gs~iivTtR~~~v~~~~~~~~---~~~l~~L 340 (923)
.......+...+. +.+-|+++|..... +..+-..+.. .+.. ...|+.+|+||...++........ ...+..
T Consensus 391 fS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~- 469 (782)
T PRK00409 391 FSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVENASVEF- 469 (782)
T ss_pred HHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeEEEEEEE-
Confidence 1111122222222 47889999998543 3233333322 2211 124789999999988776543221 111111
Q ss_pred ChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHHHHHccCCCHHHHHHHHh
Q 039167 341 SGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTIASLLRSKNTEKEWQNILK 404 (923)
Q Consensus 341 ~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~l~ 404 (923)
+ ++... +......+. .... -|-.|++++ |+|-.+..-|..+... .......++.
T Consensus 470 d-~~~l~-~~Ykl~~G~--~g~S----~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~ 523 (782)
T PRK00409 470 D-EETLR-PTYRLLIGI--PGKS----NAFEIAKRL-GLPENIIEEAKKLIGE-DKEKLNELIA 523 (782)
T ss_pred e-cCcCc-EEEEEeeCC--CCCc----HHHHHHHHh-CcCHHHHHHHHHHHhh-hhhHHHHHHH
Confidence 1 11111 111111111 1112 256677666 8888888888776554 2234444443
No 387
>PRK06547 hypothetical protein; Provisional
Probab=94.70 E-value=0.042 Score=52.95 Aligned_cols=26 Identities=35% Similarity=0.332 Sum_probs=23.3
Q ss_pred CCCEEEEEEecCCChHHHHHHHHhcC
Q 039167 202 KGPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
....+|+|.|+.|+||||+|+.+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999773
No 388
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.68 E-value=0.039 Score=51.64 Aligned_cols=36 Identities=31% Similarity=0.238 Sum_probs=26.3
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEE
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVC 241 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 241 (923)
..+|.|+|.+|+||||||+++.. +....-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 36899999999999999999988 3444434455553
No 389
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.62 E-value=0.34 Score=50.17 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=22.0
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.-.+++|+|..|.|||||++.++..
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999864
No 390
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.61 E-value=0.17 Score=54.16 Aligned_cols=56 Identities=21% Similarity=0.192 Sum_probs=38.3
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCccccc----ccceEEEEEeCCcccHHHHHHHHHHHH
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEK----NFEKRIWVCVSDPFDEFRIARAIIEAL 259 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l 259 (923)
.-.++.|+|.+|+|||||+..++....... .-..++|++....++..++ .++++.+
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~ 154 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERY 154 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHc
Confidence 568999999999999999988764211111 1135789998887777653 3344444
No 391
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.60 E-value=0.1 Score=50.59 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHhcC
Q 039167 206 IISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.|.|.|++|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999885
No 392
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.55 E-value=0.44 Score=48.59 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.7
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.-.+++|+|+.|+|||||.+.++.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 446999999999999999999976
No 393
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.54 E-value=0.14 Score=51.11 Aligned_cols=27 Identities=44% Similarity=0.576 Sum_probs=23.3
Q ss_pred CCCCEEEEEEecCCChHHHHHHHHhcC
Q 039167 201 QKGPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 201 ~~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
-+....|.++||+|.||||..+.++.+
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHH
Confidence 346678899999999999999999875
No 394
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.54 E-value=0.37 Score=57.16 Aligned_cols=156 Identities=18% Similarity=0.206 Sum_probs=79.5
Q ss_pred ceecchhhHHHHHHHHh---cCCC---CCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHH
Q 039167 178 EIFGRKDEKNELVDRLI---CENS---IEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRI 251 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 251 (923)
++.|.+...+++.+.+. .... ....-.+-|.++|++|.|||++|+.+.+. ....| +.++.++ +
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~--~~~~f---~~is~~~------~ 221 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSD------F 221 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCE---EEEehHH------h
Confidence 46676666555544332 1110 00112344999999999999999999873 33333 1222211 1
Q ss_pred HHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCC----------ChhhHHHhHH-hh---hc--CCCCcE
Q 039167 252 ARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE----------NFHKWEQFNN-CL---KN--CLYGSK 315 (923)
Q Consensus 252 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~----------~~~~~~~l~~-~l---~~--~~~gs~ 315 (923)
.. ...+ .........+.......+.+|++|+++.- .....+.... .+ .. ...+.-
T Consensus 222 ~~----~~~g-----~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vi 292 (644)
T PRK10733 222 VE----MFVG-----VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGII 292 (644)
T ss_pred HH----hhhc-----ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCee
Confidence 10 0000 11122233333334456789999998431 0112222222 22 11 123445
Q ss_pred EEEEecchHHHHH-h---c-ccceEeCCCCChHHHHHHHHHhh
Q 039167 316 ILITTRKEAVARI-M---G-STNIISVNVLSGMECWLVFESLA 353 (923)
Q Consensus 316 iivTtR~~~v~~~-~---~-~~~~~~l~~L~~~~~~~lf~~~a 353 (923)
||.||...+.... . + -+..+.+...+.++-.+++..+.
T Consensus 293 vIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~ 335 (644)
T PRK10733 293 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 335 (644)
T ss_pred EEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHh
Confidence 5557776543322 1 1 14577888888888888887765
No 395
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.52 E-value=0.25 Score=56.44 Aligned_cols=65 Identities=20% Similarity=0.228 Sum_probs=42.9
Q ss_pred HHHHHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcCCCCcEEEEEecchHHHHHhcccceEeCCC
Q 039167 272 LMQHIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNCLYGSKILITTRKEAVARIMGSTNIISVNV 339 (923)
Q Consensus 272 ~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~ 339 (923)
..-.+...+-.+.=++|||.-=+. +.+..+.+..++.... | .||+.|.++.....+. ..++.+++
T Consensus 446 ~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~-G-tvl~VSHDr~Fl~~va-~~i~~~~~ 511 (530)
T COG0488 446 ARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE-G-TVLLVSHDRYFLDRVA-TRIWLVED 511 (530)
T ss_pred HHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC-C-eEEEEeCCHHHHHhhc-ceEEEEcC
Confidence 344466667788899999965221 3466677777776554 5 4889999987776654 34555553
No 396
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.52 E-value=0.82 Score=45.72 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=34.3
Q ss_pred HHHHHHHhcCCceEEEecCCCCC-ChhhHHHhHH-hhhc-CCCCcEEEEEecchHHHHH
Q 039167 273 MQHIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNN-CLKN-CLYGSKILITTRKEAVARI 328 (923)
Q Consensus 273 ~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~-~l~~-~~~gs~iivTtR~~~v~~~ 328 (923)
.-.+.+.+..++-++++|+--.. +....+.+.. .+.. ...|..||++|.+......
T Consensus 135 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~ 193 (204)
T cd03250 135 RISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH 193 (204)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh
Confidence 34466777888999999986332 2333344544 2332 2346778888888765553
No 397
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.51 E-value=0.32 Score=49.84 Aligned_cols=53 Identities=17% Similarity=0.242 Sum_probs=32.1
Q ss_pred HHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcC-C-CCcEEEEEecchHHHH
Q 039167 275 HIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNC-L-YGSKILITTRKEAVAR 327 (923)
Q Consensus 275 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~-~gs~iivTtR~~~v~~ 327 (923)
.+.+.+-.++-+++||+.-.. +...-..+...+... . .|..||++|.+.+...
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~ 205 (233)
T cd03258 150 GIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVK 205 (233)
T ss_pred HHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 345556677789999987332 333344455555432 2 3667888888876544
No 398
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.51 E-value=0.096 Score=57.02 Aligned_cols=113 Identities=16% Similarity=0.192 Sum_probs=62.7
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGK 283 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 283 (923)
...+.|.|+.|.||||+.+.+.+. +..+...+++. +.++.... .... ..+-....-..+.......++..|+..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~t-iEdp~E~~--~~~~-~~~i~q~evg~~~~~~~~~l~~~lr~~ 195 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDY--INKNAAGHIIT-IEDPIEYV--HRNK-RSLINQREVGLDTLSFANALRAALRED 195 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEE-EcCChhhh--ccCc-cceEEccccCCCCcCHHHHHHHhhccC
Confidence 468999999999999999988763 33344444443 33322110 0000 000000000111233556678888899
Q ss_pred ceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecchHHHH
Q 039167 284 KLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRKEAVAR 327 (923)
Q Consensus 284 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 327 (923)
.=.|++|.+-+ .+.+..... ....|..|+.|....++..
T Consensus 196 pd~i~vgEird--~~~~~~~l~---aa~tGh~v~~T~Ha~~~~~ 234 (343)
T TIGR01420 196 PDVILIGEMRD--LETVELALT---AAETGHLVFGTLHTNSAAQ 234 (343)
T ss_pred CCEEEEeCCCC--HHHHHHHHH---HHHcCCcEEEEEcCCCHHH
Confidence 99999999943 344443222 2234666777777655443
No 399
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.50 E-value=0.36 Score=50.09 Aligned_cols=102 Identities=10% Similarity=0.085 Sum_probs=52.6
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCccc--HHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhc
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFD--EFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVA 281 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (923)
..+++++|.+|+||||+++.+... ....=..+.++... .+. ...-++...+.++.......+...+...+...-+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~--l~~~~~~v~~i~~D-~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTD-HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEecC-CCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh
Confidence 468999999999999999888653 21111234455433 222 2222222223232221222344445444443322
Q ss_pred -CCceEEEecCCCCC--ChhhHHHhHHhhh
Q 039167 282 -GKKLLLVLDDVWNE--NFHKWEQFNNCLK 308 (923)
Q Consensus 282 -~kr~LlVlDdv~~~--~~~~~~~l~~~l~ 308 (923)
++.-++++|..... +....+.+...+.
T Consensus 152 ~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~ 181 (270)
T PRK06731 152 EARVDYILIDTAGKNYRASETVEEMIETMG 181 (270)
T ss_pred cCCCCEEEEECCCCCcCCHHHHHHHHHHHh
Confidence 34578899987543 2334555555443
No 400
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.47 E-value=0.52 Score=48.33 Aligned_cols=61 Identities=10% Similarity=0.188 Sum_probs=36.6
Q ss_pred HHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcCCCCcEEEEEecchHHHHHhcccceEeC
Q 039167 275 HIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNCLYGSKILITTRKEAVARIMGSTNIISV 337 (923)
Q Consensus 275 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l 337 (923)
.+.+.+..++-++++|+.-.. +....+.+...+.....|..||++|.+...... .++++.+
T Consensus 148 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~v~~l 209 (234)
T cd03251 148 AIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN--ADRIVVL 209 (234)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh--CCEEEEe
Confidence 355566667789999987332 334455555555443346678888888665543 3344443
No 401
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.46 E-value=1 Score=44.06 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=21.7
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.-.|++|+|+.|.|||||.+.+..-
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3458999999999999999999763
No 402
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.45 E-value=0.14 Score=53.47 Aligned_cols=89 Identities=21% Similarity=0.222 Sum_probs=47.2
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHH--HHHHHHHHHHhCC---CCCCcCHHH-HHHHH
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEF--RIARAIIEALTGC---LPNFVEFQS-LMQHI 276 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~--~~~~~i~~~l~~~---~~~~~~~~~-~~~~l 276 (923)
..+++.++|++|+||||++..+... ....-..++++. .+.+... +-++...+..+.. .....+... ....+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~-~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAA-GDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEe-CCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 5689999999999999999888763 222212344443 3333332 2223333333321 111122222 22334
Q ss_pred HHHhcCCceEEEecCCCC
Q 039167 277 QKHVAGKKLLLVLDDVWN 294 (923)
Q Consensus 277 ~~~l~~kr~LlVlDdv~~ 294 (923)
.....+..-++++|-...
T Consensus 148 ~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHCCCCEEEEeCCCC
Confidence 444445566888897643
No 403
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=94.45 E-value=0.75 Score=47.26 Aligned_cols=124 Identities=14% Similarity=0.188 Sum_probs=78.2
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAII 256 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 256 (923)
+.|+|-.. ..+++.++.... ..-+.+.++|+.|+|||+-++.+++. .+..+-+..+..+....+...+.
T Consensus 72 ~~~l~tkt-~r~~~~~~~~A~----k~g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~ 140 (297)
T COG2842 72 PDFLETKT-VRRIFFRTRPAS----KTGSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIIC 140 (297)
T ss_pred ccccccch-hHhHhhhhhhhh----hcCceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHH
Confidence 34555332 334444443321 23348899999999999999999883 22333445666666666666666
Q ss_pred HHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCC
Q 039167 257 EALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYG 313 (923)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 313 (923)
........ .........+...+++..-+|+.|....-....++.++......+.|
T Consensus 141 ~~~~~~~~--~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~~Gi~ 195 (297)
T COG2842 141 AAAFGATD--GTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDKTGIG 195 (297)
T ss_pred HHHhcccc--hhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHhhCce
Confidence 65554322 22334455566667888899999988666667778887766554433
No 404
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.43 E-value=0.4 Score=48.64 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.5
Q ss_pred CEEEEEEecCCChHHHHHHHHhcC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
-.+++|+|+.|+|||||++.+...
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999764
No 405
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.42 E-value=0.027 Score=54.56 Aligned_cols=24 Identities=42% Similarity=0.522 Sum_probs=22.1
Q ss_pred CEEEEEEecCCChHHHHHHHHhcC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
..+|+|-||=|+||||||+.+.+.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 468999999999999999999984
No 406
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=94.42 E-value=0.074 Score=53.98 Aligned_cols=77 Identities=16% Similarity=0.215 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc-ccCCHHHHHHHHHHHHhHhhhhhhHHH
Q 039167 4 AIISPLLQQLTTMAAEETKEQVRLVTGVGKEVKKLSRNLQAIQAVLHDVEKR-QVKEESVRLWLDQLRDVSYNMEDVLEE 82 (923)
Q Consensus 4 ~~v~~v~~~l~~~~~~~~~~e~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~-~~~~~~~~~wl~~lr~~~~d~ed~ld~ 82 (923)
+.|..++.+|-. +......++.-++.+++-++.+++++|.||+..... ..+......+..++-..||++|+++|-
T Consensus 296 GyVdFlL~NLkd----fq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDa 371 (402)
T PF12061_consen 296 GYVDFLLKNLKD----FQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDA 371 (402)
T ss_pred cHHHHHHhhHHH----HhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeeh
Confidence 345566666666 444445567778999999999999999999987443 333345888999999999999999998
Q ss_pred HH
Q 039167 83 WS 84 (923)
Q Consensus 83 ~~ 84 (923)
+.
T Consensus 372 Ci 373 (402)
T PF12061_consen 372 CI 373 (402)
T ss_pred hh
Confidence 74
No 407
>PRK06762 hypothetical protein; Provisional
Probab=94.42 E-value=0.031 Score=53.89 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.4
Q ss_pred CEEEEEEecCCChHHHHHHHHhcC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
..+|.|.|+.|+||||+|+.+.+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999873
No 408
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.41 E-value=0.26 Score=49.49 Aligned_cols=53 Identities=19% Similarity=0.202 Sum_probs=32.4
Q ss_pred HHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcC-CCCcEEEEEecchHHHHH
Q 039167 276 IQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNC-LYGSKILITTRKEAVARI 328 (923)
Q Consensus 276 l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~~ 328 (923)
+...+..++-++++|+.-.. +....+.+...+... ..|..||++|.+......
T Consensus 137 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~ 191 (208)
T cd03268 137 IALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQK 191 (208)
T ss_pred HHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 45556667789999987332 233444455555432 246678999988765543
No 409
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.41 E-value=0.5 Score=46.37 Aligned_cols=21 Identities=19% Similarity=0.135 Sum_probs=18.6
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 039167 206 IISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~ 226 (923)
++.|+|+.|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999998873
No 410
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.41 E-value=0.2 Score=55.39 Aligned_cols=87 Identities=15% Similarity=0.104 Sum_probs=48.5
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCC-----C-CCCcCHH-----H
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGC-----L-PNFVEFQ-----S 271 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~-----~-~~~~~~~-----~ 271 (923)
.-..++|+|..|+|||||++.+.... .....+++....+.-+..++....+...... . .+..... .
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 34579999999999999999888632 2222444443323344544444443333211 0 1111111 1
Q ss_pred HHHHHHHHh--cCCceEEEecCC
Q 039167 272 LMQHIQKHV--AGKKLLLVLDDV 292 (923)
Q Consensus 272 ~~~~l~~~l--~~kr~LlVlDdv 292 (923)
..-.+.+++ +++.+|+++||+
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 122234444 589999999999
No 411
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.41 E-value=0.39 Score=48.87 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=21.5
Q ss_pred CEEEEEEecCCChHHHHHHHHhcC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
-.+++|.|..|+|||||++.+...
T Consensus 48 Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 48 GERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 412
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.39 E-value=0.1 Score=56.79 Aligned_cols=80 Identities=23% Similarity=0.289 Sum_probs=46.7
Q ss_pred CceecchhhHHHHHHHHhcC-------CC-CCCCCCEEEEEEecCCChHHHHHHHHhcCccccccc---ceEEEEEeC-C
Q 039167 177 SEIFGRKDEKNELVDRLICE-------NS-IEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNF---EKRIWVCVS-D 244 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~-------~~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s-~ 244 (923)
..++|.++.++.+...+... +. ......+-|.++|++|+|||++|+.+... ....| +..-++..+ .
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~--l~~~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGYV 89 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH--hCCeEEEeecceeecCCcc
Confidence 34788888887776555431 00 01113467899999999999999999884 33333 222222211 1
Q ss_pred cccHHHHHHHHHHH
Q 039167 245 PFDEFRIARAIIEA 258 (923)
Q Consensus 245 ~~~~~~~~~~i~~~ 258 (923)
..+...+++.+...
T Consensus 90 G~dvE~i~r~l~e~ 103 (441)
T TIGR00390 90 GRDVESMVRDLTDA 103 (441)
T ss_pred cCCHHHHHHHHHHH
Confidence 22455555555544
No 413
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.38 E-value=0.9 Score=44.87 Aligned_cols=151 Identities=14% Similarity=0.139 Sum_probs=82.8
Q ss_pred eecc-hhhHHHHHHHHhcCCC-------CCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHH
Q 039167 179 IFGR-KDEKNELVDRLICENS-------IEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFR 250 (923)
Q Consensus 179 ~vGr-~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 250 (923)
++|+ +...++|.+.+.-+-. .+-..++-+.++|++|.|||-||++|+++ ....|+.||.. +-
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgs---el 217 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGS---EL 217 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechH---HH
Confidence 4554 5566666555432211 12235677899999999999999999984 23456777652 22
Q ss_pred HHHHHHHHHhCCCCCCcCHHHHHHHHHHHh----cCCceEEEecCCCCC-----------ChhhHHHhHHhhh---cC--
Q 039167 251 IARAIIEALTGCLPNFVEFQSLMQHIQKHV----AGKKLLLVLDDVWNE-----------NFHKWEQFNNCLK---NC-- 310 (923)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~kr~LlVlDdv~~~-----------~~~~~~~l~~~l~---~~-- 310 (923)
+++.|-+ ..+.+++.+ ..-+-+|..|.+.+. +++.-..+...+. ..
T Consensus 218 vqk~ige--------------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea 283 (404)
T KOG0728|consen 218 VQKYIGE--------------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA 283 (404)
T ss_pred HHHHhhh--------------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc
Confidence 2222211 112222221 234678888877431 1111122222222 11
Q ss_pred CCCcEEEEEecchHHHHHh----c-ccceEeCCCCChHHHHHHHHHhh
Q 039167 311 LYGSKILITTRKEAVARIM----G-STNIISVNVLSGMECWLVFESLA 353 (923)
Q Consensus 311 ~~gs~iivTtR~~~v~~~~----~-~~~~~~l~~L~~~~~~~lf~~~a 353 (923)
.+.-+||..|..-++.... | .+..++..+-+++.-.+.++-+.
T Consensus 284 tknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 284 TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred ccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 3467888888765554332 2 24567777777777777776543
No 414
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.37 E-value=0.63 Score=46.95 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=21.4
Q ss_pred CEEEEEEecCCChHHHHHHHHhcC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
-.+++|+|..|.|||||.+.+...
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 458999999999999999999764
No 415
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.36 E-value=0.75 Score=47.32 Aligned_cols=52 Identities=13% Similarity=0.272 Sum_probs=32.7
Q ss_pred HHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcCCCCcEEEEEecchHHHH
Q 039167 276 IQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNCLYGSKILITTRKEAVAR 327 (923)
Q Consensus 276 l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 327 (923)
+.+.+..++-++++|+.... +....+.+...+.....|..||++|.+.....
T Consensus 150 la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~ 202 (238)
T cd03249 150 IARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR 202 (238)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence 45556667789999987432 33444555555543335667888888876554
No 416
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.36 E-value=0.39 Score=47.88 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.7
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.-.+++|+|..|.|||||.+.+...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999764
No 417
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.34 E-value=0.3 Score=51.58 Aligned_cols=53 Identities=15% Similarity=0.140 Sum_probs=33.4
Q ss_pred HHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcC--CCCcEEEEEecchHHHH
Q 039167 275 HIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNC--LYGSKILITTRKEAVAR 327 (923)
Q Consensus 275 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtR~~~v~~ 327 (923)
.+.+.+..++-++++|+.-.. +...-..+...+..- ..|..||++|.+.....
T Consensus 150 ~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~ 205 (279)
T PRK13650 150 AIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA 205 (279)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 355666778899999987432 333344455555432 23677888888866554
No 418
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.32 E-value=0.47 Score=48.47 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=29.6
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDP 245 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 245 (923)
.-.++.|.|.+|.||||+|.++.... . ..-..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~-~-~~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG-L-RDGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-H-hcCCeEEEEEccCC
Confidence 45799999999999999998765421 1 22346778876543
No 419
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.29 E-value=0.08 Score=53.31 Aligned_cols=39 Identities=33% Similarity=0.488 Sum_probs=28.2
Q ss_pred hHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcC
Q 039167 185 EKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 185 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
+..++++.+.... .+..+|+|.|++|+|||||...+...
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~ 52 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRE 52 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHH
Confidence 4556666665432 36789999999999999999887664
No 420
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=94.29 E-value=0.57 Score=53.84 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=36.0
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcC
Q 039167 178 EIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.++|+...+.++...+..-. .....|.|+|.+|+|||++|+.++..
T Consensus 139 ~lig~s~~~~~l~~~~~~~~----~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLS----RSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred cceecCHHHHHHHHHHHHHh----ccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 58898888888777664322 23456889999999999999999884
No 421
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.27 E-value=0.57 Score=47.84 Aligned_cols=54 Identities=13% Similarity=0.237 Sum_probs=33.7
Q ss_pred HHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcCCCCcEEEEEecchHHHHH
Q 039167 275 HIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNCLYGSKILITTRKEAVARI 328 (923)
Q Consensus 275 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 328 (923)
.+.+.+-.++-++++|+-... +....+.+...+.....|..||++|.+......
T Consensus 149 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 203 (229)
T cd03254 149 AIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN 203 (229)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh
Confidence 355566678889999987432 334444455555433346678888888766543
No 422
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=94.27 E-value=0.49 Score=48.08 Aligned_cols=53 Identities=23% Similarity=0.293 Sum_probs=33.3
Q ss_pred HHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcC-CCCcEEEEEecchHHHH
Q 039167 275 HIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNC-LYGSKILITTRKEAVAR 327 (923)
Q Consensus 275 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~ 327 (923)
.+.+.+-.++-++++|+.-.. +....+.+...+... ..|..||++|.+.+...
T Consensus 123 ~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~ 177 (223)
T TIGR03771 123 LVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAM 177 (223)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 456667778899999986332 334445555555432 23667888888766443
No 423
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.26 E-value=0.17 Score=54.47 Aligned_cols=56 Identities=23% Similarity=0.243 Sum_probs=39.3
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCccccc----ccceEEEEEeCCcccHHHHHHHHHHHH
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEK----NFEKRIWVCVSDPFDEFRIARAIIEAL 259 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l 259 (923)
.-.++-|+|.+|+|||+++.+++-...... .=..++||+....++..++.+ +++.+
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~ 153 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEAR 153 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHc
Confidence 467899999999999999988865322210 112788999988888776543 44443
No 424
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.25 E-value=0.044 Score=57.21 Aligned_cols=92 Identities=26% Similarity=0.273 Sum_probs=48.1
Q ss_pred HHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCC
Q 039167 186 KNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPN 265 (923)
Q Consensus 186 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~ 265 (923)
...+++.+.. .-+-+.++|+.|+|||++++....... ...| ...-++.+...+...+++.+-..+......
T Consensus 22 ~~~ll~~l~~-------~~~pvLl~G~~GtGKT~li~~~l~~l~-~~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~ 92 (272)
T PF12775_consen 22 YSYLLDLLLS-------NGRPVLLVGPSGTGKTSLIQNFLSSLD-SDKY-LVITINFSAQTTSNQLQKIIESKLEKRRGR 92 (272)
T ss_dssp HHHHHHHHHH-------CTEEEEEESSTTSSHHHHHHHHHHCST-TCCE-EEEEEES-TTHHHHHHHHCCCTTECECTTE
T ss_pred HHHHHHHHHH-------cCCcEEEECCCCCchhHHHHhhhccCC-cccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCCC
Confidence 3455666654 345779999999999999998876321 1122 233455555444443332221111110000
Q ss_pred CcCHHHHHHHHHHHhcCCceEEEecCCCCCC
Q 039167 266 FVEFQSLMQHIQKHVAGKKLLLVLDDVWNEN 296 (923)
Q Consensus 266 ~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~ 296 (923)
. ..--.+|+.++.+||+--..
T Consensus 93 ~----------~gP~~~k~lv~fiDDlN~p~ 113 (272)
T PF12775_consen 93 V----------YGPPGGKKLVLFIDDLNMPQ 113 (272)
T ss_dssp E----------EEEESSSEEEEEEETTT-S-
T ss_pred C----------CCCCCCcEEEEEecccCCCC
Confidence 0 00014689999999995433
No 425
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.24 E-value=0.71 Score=52.45 Aligned_cols=55 Identities=31% Similarity=0.320 Sum_probs=35.6
Q ss_pred ceecchhhHHHHHHHHhcCCC-------CCCCCCEEEEEEecCCChHHHHHHHHhcCccccccc
Q 039167 178 EIFGRKDEKNELVDRLICENS-------IEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNF 234 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 234 (923)
++=|.++-..+|.+...-+-. -+-...+-|..+|++|.|||++|+++.+ +.+..|
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF 496 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF 496 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCe
Confidence 455566655555543321110 0123567899999999999999999999 444444
No 426
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=94.24 E-value=0.57 Score=48.53 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.6
Q ss_pred CEEEEEEecCCChHHHHHHHHhcC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
-.+++|+|..|.|||||++.+...
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 27 GEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 458999999999999999999875
No 427
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.24 E-value=0.25 Score=50.73 Aligned_cols=48 Identities=23% Similarity=0.342 Sum_probs=33.3
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHH
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARA 254 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 254 (923)
.-.++.|.|.+|+|||++|.++... .. ..-..++|++... +..++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~-~~-~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH-HH-HcCCcEEEEEeeC--CHHHHHHH
Confidence 5679999999999999999876542 12 2345678887765 44444444
No 428
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.22 E-value=0.15 Score=50.91 Aligned_cols=84 Identities=19% Similarity=0.217 Sum_probs=49.8
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcc-cHHHHHHHHHHHHhCC-------CCCCcCHHH-----
Q 039167 205 HIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPF-DEFRIARAIIEALTGC-------LPNFVEFQS----- 271 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~----- 271 (923)
.-++|.|.+|+|||+|+..+.+.. .-+..+++.+++.. +..++.+.+...-... ..+..-...
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 568999999999999999998743 22344777777654 4455555553321110 011110111
Q ss_pred HHHHHHHHh--cCCceEEEecCC
Q 039167 272 LMQHIQKHV--AGKKLLLVLDDV 292 (923)
Q Consensus 272 ~~~~l~~~l--~~kr~LlVlDdv 292 (923)
..-.+.+++ +++.+|+++||+
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETH
T ss_pred cchhhhHHHhhcCCceeehhhhh
Confidence 111233333 699999999999
No 429
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=94.21 E-value=0.67 Score=46.68 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.7
Q ss_pred CEEEEEEecCCChHHHHHHHHhcC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
-.+++|+|+.|.|||||.+.++.-
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 430
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.20 E-value=0.5 Score=47.18 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.9
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.-.+++|+|..|.|||||++.+...
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhccc
Confidence 3468999999999999999999774
No 431
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.19 E-value=0.067 Score=48.62 Aligned_cols=40 Identities=23% Similarity=0.145 Sum_probs=28.7
Q ss_pred hhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcC
Q 039167 184 DEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 184 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
++..++-+.|...- ..-.+|.+.|.-|+||||+++.+.+.
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 44555555554321 13458999999999999999999874
No 432
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.19 E-value=0.26 Score=53.12 Aligned_cols=57 Identities=19% Similarity=0.201 Sum_probs=40.2
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccc---c-ccceEEEEEeCCcccHHHHHHHHHHHHh
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVE---K-NFEKRIWVCVSDPFDEFRIARAIIEALT 260 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 260 (923)
.-.++-|+|.+|+|||+|+..++-..... . .-..++|++....|++.++. ++++.++
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~ 182 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFG 182 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcC
Confidence 56788999999999999998776421111 1 11268899999988887764 4455544
No 433
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=94.17 E-value=0.16 Score=58.65 Aligned_cols=133 Identities=12% Similarity=0.063 Sum_probs=70.9
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHH
Q 039167 178 EIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIE 257 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 257 (923)
.++|....+.++++.+..-.. .-..|.|+|..|+||+++|+.++.... ..-...+.++++.-. ...+..
T Consensus 205 ~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~~s~--r~~~pfv~inca~~~--~~~~e~--- 273 (520)
T PRK10820 205 QIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHLRSP--RGKKPFLALNCASIP--DDVVES--- 273 (520)
T ss_pred ceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHHhCC--CCCCCeEEeccccCC--HHHHHH---
Confidence 589998888888776643221 234588999999999999999876311 111122344444322 122221
Q ss_pred HHhCCCCCC-cCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCC-----------CCcEEEEEecch
Q 039167 258 ALTGCLPNF-VEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCL-----------YGSKILITTRKE 323 (923)
Q Consensus 258 ~l~~~~~~~-~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~~ 323 (923)
.+.+..+.. ....+...-+.+ ....=.|+||+|..........+...+..+. ...|||.||...
T Consensus 274 elFG~~~~~~~~~~~~~~g~~e--~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~ 349 (520)
T PRK10820 274 ELFGHAPGAYPNALEGKKGFFE--QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 349 (520)
T ss_pred HhcCCCCCCcCCcccCCCChhh--hcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCC
Confidence 222211110 000000000000 1223457899998776666666777775531 124788877653
No 434
>PRK03839 putative kinase; Provisional
Probab=94.16 E-value=0.034 Score=54.46 Aligned_cols=22 Identities=36% Similarity=0.690 Sum_probs=20.1
Q ss_pred EEEEEecCCChHHHHHHHHhcC
Q 039167 206 IISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.|.|+|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999884
No 435
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.15 E-value=0.95 Score=46.79 Aligned_cols=54 Identities=19% Similarity=0.148 Sum_probs=32.7
Q ss_pred HHHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcCCCCcEEEEEecchHHHH
Q 039167 274 QHIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNCLYGSKILITTRKEAVAR 327 (923)
Q Consensus 274 ~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 327 (923)
-.+.+.+-.++-++++|+.-.. +...-..+...+.....|..||++|.+.....
T Consensus 151 v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~ 205 (246)
T PRK14269 151 LCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGK 205 (246)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 3456666778889999987322 23333445555543333667888888766443
No 436
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.14 E-value=0.29 Score=57.08 Aligned_cols=117 Identities=13% Similarity=0.070 Sum_probs=60.1
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCccc-ccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCC---cCHHHHHHHHHH
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDV-EKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNF---VEFQSLMQHIQK 278 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~ 278 (923)
..++..|.|.+|.||||+++.+...... ...=...+.+.....--...+.+.+...+..-.... .........+++
T Consensus 166 ~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHr 245 (615)
T PRK10875 166 TRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHR 245 (615)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHH
Confidence 3468999999999999999888763111 111124566666555444555554443332110000 000001233444
Q ss_pred HhcC------------Cc---eEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecc
Q 039167 279 HVAG------------KK---LLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRK 322 (923)
Q Consensus 279 ~l~~------------kr---~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~ 322 (923)
.|.. .+ -++|+|..-- .+...+...+..-..++|+|+-=-.
T Consensus 246 lLg~~~~~~~~~~~~~~~l~~dvlIvDEaSM---vd~~lm~~ll~al~~~~rlIlvGD~ 301 (615)
T PRK10875 246 LLGAQPGSQRLRYHAGNPLHLDVLVVDEASM---VDLPMMARLIDALPPHARVIFLGDR 301 (615)
T ss_pred HhCcCCCccchhhccccCCCCCeEEEChHhc---ccHHHHHHHHHhcccCCEEEEecch
Confidence 4421 11 3899998833 3334444444444457788776543
No 437
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.13 E-value=0.65 Score=47.89 Aligned_cols=54 Identities=17% Similarity=0.119 Sum_probs=32.8
Q ss_pred HHHHHhcCCceEEEecCCCC-CChhhHHHhHHhhhcCCCCcEEEEEecchHHHHH
Q 039167 275 HIQKHVAGKKLLLVLDDVWN-ENFHKWEQFNNCLKNCLYGSKILITTRKEAVARI 328 (923)
Q Consensus 275 ~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 328 (923)
.+.+.+-.++-++++|+.-. -+......+...+.....+..||++|.+.+....
T Consensus 153 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~ 207 (242)
T TIGR03411 153 EIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRS 207 (242)
T ss_pred HHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHH
Confidence 35556667778999998733 2334444555555433234578888888665443
No 438
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.13 E-value=0.19 Score=52.29 Aligned_cols=108 Identities=19% Similarity=0.214 Sum_probs=55.3
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGK 283 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 283 (923)
-.+|.|.|+.|.||||+++.+.+. +.. ....+ +.+.++.... +..+ .++... . .........++..++..
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~--i~~-~~~~i-itiEdp~E~~--~~~~-~q~~v~--~-~~~~~~~~~l~~~lR~~ 149 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSE--LNT-PEKNI-ITVEDPVEYQ--IPGI-NQVQVN--E-KAGLTFARGLRAILRQD 149 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhh--hCC-CCCeE-EEECCCceec--CCCc-eEEEeC--C-cCCcCHHHHHHHHhccC
Confidence 458999999999999999988653 211 11111 2222222110 0000 011100 0 11123456677788888
Q ss_pred ceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecchHHH
Q 039167 284 KLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRKEAVA 326 (923)
Q Consensus 284 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 326 (923)
.=.|+++++-+. +....+..+. ..|-.++-|..-.++.
T Consensus 150 PD~i~vgEiR~~--e~a~~~~~aa---~tGh~v~tTlHa~~~~ 187 (264)
T cd01129 150 PDIIMVGEIRDA--ETAEIAVQAA---LTGHLVLSTLHTNDAP 187 (264)
T ss_pred CCEEEeccCCCH--HHHHHHHHHH---HcCCcEEEEeccCCHH
Confidence 999999999442 3333222222 2354455555544433
No 439
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=0.73 Score=53.26 Aligned_cols=133 Identities=17% Similarity=0.124 Sum_probs=73.7
Q ss_pred CCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhc
Q 039167 202 KGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVA 281 (923)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (923)
...+.+-++|++|.|||.||+++++ .....|-. +... + +. ... -......+...+....+
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi~-----v~~~-~---l~----sk~-----vGesek~ir~~F~~A~~ 333 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFIS-----VKGS-E---LL----SKW-----VGESEKNIRELFEKARK 333 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEEE-----eeCH-H---Hh----ccc-----cchHHHHHHHHHHHHHc
Confidence 3556899999999999999999999 34444422 2211 1 10 000 00111223333344446
Q ss_pred CCceEEEecCCCC-----CC--h----hhHHHhHHhhhcCC--CCcEEEEEecchHHHHH-h---cc-cceEeCCCCChH
Q 039167 282 GKKLLLVLDDVWN-----EN--F----HKWEQFNNCLKNCL--YGSKILITTRKEAVARI-M---GS-TNIISVNVLSGM 343 (923)
Q Consensus 282 ~kr~LlVlDdv~~-----~~--~----~~~~~l~~~l~~~~--~gs~iivTtR~~~v~~~-~---~~-~~~~~l~~L~~~ 343 (923)
..+..|.+|.+.. .. . ....++...+.... .+..||-||-....... + +. ...+.+.+-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 7889999999832 11 0 12222333332222 23334555554433221 1 12 458889999999
Q ss_pred HHHHHHHHhhc
Q 039167 344 ECWLVFESLAF 354 (923)
Q Consensus 344 ~~~~lf~~~a~ 354 (923)
+..+.|..+.-
T Consensus 414 ~r~~i~~~~~~ 424 (494)
T COG0464 414 ERLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHHhc
Confidence 99999998764
No 440
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=94.10 E-value=0.27 Score=48.80 Aligned_cols=20 Identities=25% Similarity=0.479 Sum_probs=18.9
Q ss_pred EEEEEecCCChHHHHHHHHh
Q 039167 206 IISLVGMGGIGKTTLAQFAY 225 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~ 225 (923)
+++|+|+.|+|||||++.++
T Consensus 24 ~~~i~G~nGsGKStll~al~ 43 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIR 43 (197)
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 88999999999999999886
No 441
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.09 E-value=0.26 Score=52.20 Aligned_cols=53 Identities=15% Similarity=0.095 Sum_probs=34.0
Q ss_pred HHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcC--CCCcEEEEEecchHHHH
Q 039167 275 HIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNC--LYGSKILITTRKEAVAR 327 (923)
Q Consensus 275 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtR~~~v~~ 327 (923)
.+.+.+..++-++++|+.... +......+...+... ..|..||++|.+.+...
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~ 208 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN 208 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 355666778889999987442 334455555555432 23667888888866554
No 442
>PRK13948 shikimate kinase; Provisional
Probab=94.09 E-value=0.48 Score=46.10 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=22.3
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
....|.++|+.|+||||+++.+.+.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999873
No 443
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.09 E-value=0.044 Score=55.45 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHhcC
Q 039167 206 IISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
-|.|+|++|+||||+|+.+.+.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999999773
No 444
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.06 E-value=0.7 Score=48.63 Aligned_cols=53 Identities=19% Similarity=0.181 Sum_probs=32.9
Q ss_pred HHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcC-CCCcEEEEEecchHHHH
Q 039167 275 HIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNC-LYGSKILITTRKEAVAR 327 (923)
Q Consensus 275 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~ 327 (923)
.+.+.+..++-++++|+.-.. +......+...+... ..|.-||++|.+.+.+.
T Consensus 148 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~ 202 (274)
T PRK13647 148 AIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAA 202 (274)
T ss_pred HHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 355667778899999987432 334444455555432 23667888888866543
No 445
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.06 E-value=0.37 Score=57.20 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.1
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.-..|+|+|..|+|||||++.+..
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999999965
No 446
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.05 E-value=0.049 Score=48.60 Aligned_cols=27 Identities=37% Similarity=0.559 Sum_probs=18.5
Q ss_pred EEEEecCCChHHHHHHHHhcCcccccccc
Q 039167 207 ISLVGMGGIGKTTLAQFAYNNGDVEKNFE 235 (923)
Q Consensus 207 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 235 (923)
|-|+|.+|+||||+|+.+.. .....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 57899999999999999988 4666664
No 447
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.05 E-value=0.0036 Score=62.32 Aligned_cols=101 Identities=18% Similarity=0.143 Sum_probs=68.8
Q ss_pred CCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchhhhCCCCCcEEecCCCccccccC--ccccC
Q 039167 555 LTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPETLCELYNLEHLNVNCCVKLRELP--QGIGR 632 (923)
Q Consensus 555 ~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp--~~i~~ 632 (923)
+.+.+.|++.+|. +..+ +.+.+|+.|+.|.|+-|. |+.|-. +..+++|+.|.|+.|. +..+- .-+.+
T Consensus 18 l~~vkKLNcwg~~-------L~DI-sic~kMp~lEVLsLSvNk-IssL~p-l~rCtrLkElYLRkN~-I~sldEL~YLkn 86 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-------LDDI-SICEKMPLLEVLSLSVNK-ISSLAP-LQRCTRLKELYLRKNC-IESLDELEYLKN 86 (388)
T ss_pred HHHhhhhcccCCC-------ccHH-HHHHhcccceeEEeeccc-cccchh-HHHHHHHHHHHHHhcc-cccHHHHHHHhc
Confidence 4456667777554 5554 345789999999999998 888866 8899999999999876 65553 23567
Q ss_pred CCCCCEEeCCCCcccccCCc-----CCCCCCCCCcCCce
Q 039167 633 LRKLMYLDNECTVSLRYLPV-----GIGKLIRLRRVKEF 666 (923)
Q Consensus 633 L~~L~~L~l~~~~~l~~~p~-----~i~~L~~L~~L~~~ 666 (923)
|++|+.|.|..|.-...-+. .+.-|++|+.|+..
T Consensus 87 lpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 87 LPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred CchhhhHhhccCCcccccchhHHHHHHHHcccchhccCc
Confidence 88888888876643332222 13445556655543
No 448
>PRK04040 adenylate kinase; Provisional
Probab=94.03 E-value=0.044 Score=53.79 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=21.1
Q ss_pred CEEEEEEecCCChHHHHHHHHhc
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
..+|+|+|++|+||||+++.+.+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 449
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.03 E-value=0.043 Score=54.15 Aligned_cols=24 Identities=33% Similarity=0.301 Sum_probs=21.9
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
+..+|.|+|++|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999986
No 450
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.02 E-value=0.61 Score=47.04 Aligned_cols=24 Identities=17% Similarity=0.047 Sum_probs=20.8
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
..+++.|.|+.|.||||+.+.+.-
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346889999999999999988865
No 451
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=94.02 E-value=0.57 Score=49.32 Aligned_cols=53 Identities=13% Similarity=0.270 Sum_probs=32.4
Q ss_pred HHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcC-CCCcEEEEEecchHHHH
Q 039167 275 HIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNC-LYGSKILITTRKEAVAR 327 (923)
Q Consensus 275 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~ 327 (923)
.+.+.+-.++-++++|+.-.. +......+...+... ..|..||++|.+.+...
T Consensus 152 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~ 206 (272)
T PRK15056 152 FLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVT 206 (272)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 355566677889999987432 334444555555432 23667888888865443
No 452
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.02 E-value=0.73 Score=51.73 Aligned_cols=154 Identities=21% Similarity=0.308 Sum_probs=85.4
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGK 283 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 283 (923)
..-|.++|++|.|||-||++|+| +.+..| ++|..+ +++..-. ......+...+++.-..-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKGP----ELlNkYV---------GESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKGP----ELLNKYV---------GESERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecCH----HHHHHHh---------hhHHHHHHHHHHHhhcCC
Confidence 45688999999999999999999 444454 444332 1111110 011222333333444567
Q ss_pred ceEEEecCCCCC-----C------hhhHHHhHHhhhcC--CCCcEEEEEecchHHHHH-h---cc-cceEeCCCCChHHH
Q 039167 284 KLLLVLDDVWNE-----N------FHKWEQFNNCLKNC--LYGSKILITTRKEAVARI-M---GS-TNIISVNVLSGMEC 345 (923)
Q Consensus 284 r~LlVlDdv~~~-----~------~~~~~~l~~~l~~~--~~gs~iivTtR~~~v~~~-~---~~-~~~~~l~~L~~~~~ 345 (923)
+++|.+|.+..- + .....++..-+... ..|--||-.|...++-.. + |. +..+-++.-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 899999988321 1 11122333333322 346667777776655432 1 22 45777888888888
Q ss_pred HHHHHHhhcCCCCc-cchhhHHHHHHHHHHhcCCC
Q 039167 346 WLVFESLAFVGKSM-EERENLEKIGREITRKCKGL 379 (923)
Q Consensus 346 ~~lf~~~a~~~~~~-~~~~~~~~~~~~i~~~c~Gl 379 (923)
.+.++...-..+.+ ...-++.+|++. .+|.|.
T Consensus 685 ~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gf 717 (802)
T KOG0733|consen 685 VAILKTITKNTKPPLSSDVDLDEIARN--TKCEGF 717 (802)
T ss_pred HHHHHHHhccCCCCCCcccCHHHHhhc--ccccCC
Confidence 88888776432222 222345555443 245554
No 453
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.01 E-value=0.57 Score=46.76 Aligned_cols=22 Identities=18% Similarity=0.108 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039167 205 HIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.+++|+|+.|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999973
No 454
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.01 E-value=0.067 Score=52.14 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHhcC
Q 039167 206 IISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
+|+|.|..|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 455
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.01 E-value=0.32 Score=57.46 Aligned_cols=87 Identities=20% Similarity=0.204 Sum_probs=46.8
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCccc--HHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhc
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFD--EFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVA 281 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (923)
.++++++|+.|+||||.+.++............+..+.. +.+. ..+-++...+.++.......+..++.+.+.+ ++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~-Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~-~~ 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTT-DSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA-LG 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecC-cccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH-hc
Confidence 479999999999999999888764211111123444432 2232 3334444444444333223344555444443 33
Q ss_pred CCceEEEecCCC
Q 039167 282 GKKLLLVLDDVW 293 (923)
Q Consensus 282 ~kr~LlVlDdv~ 293 (923)
++ =+|++|-..
T Consensus 263 ~~-D~VLIDTAG 273 (767)
T PRK14723 263 DK-HLVLIDTVG 273 (767)
T ss_pred CC-CEEEEeCCC
Confidence 33 366677654
No 456
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.00 E-value=0.23 Score=54.75 Aligned_cols=24 Identities=29% Similarity=0.366 Sum_probs=21.1
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
...+++++|+.|+||||++..+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999987765
No 457
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.99 E-value=0.43 Score=48.87 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=32.8
Q ss_pred HHHHHhcCCceEEEecCCCC-CChhhHHHhHHhhhcCC--CCcEEEEEecchHHH
Q 039167 275 HIQKHVAGKKLLLVLDDVWN-ENFHKWEQFNNCLKNCL--YGSKILITTRKEAVA 326 (923)
Q Consensus 275 ~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~--~gs~iivTtR~~~v~ 326 (923)
.+.+.+..++=++++|+.-. -+......+...+.... .|..||++|.+....
T Consensus 140 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~ 194 (232)
T cd03300 140 AIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEA 194 (232)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 35566677888999998733 23445555655554332 266788888876543
No 458
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.97 E-value=0.067 Score=54.14 Aligned_cols=24 Identities=17% Similarity=0.088 Sum_probs=20.8
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
..+++.|+|+.|.||||+.+.+.-
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHH
Confidence 457999999999999999988753
No 459
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.94 E-value=0.35 Score=48.71 Aligned_cols=52 Identities=13% Similarity=0.196 Sum_probs=32.2
Q ss_pred HHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcC--CCCcEEEEEecchHHHH
Q 039167 276 IQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNC--LYGSKILITTRKEAVAR 327 (923)
Q Consensus 276 l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtR~~~v~~ 327 (923)
+.+.+-.++-++++|+.-.. +....+.+...+..- ..|.-||++|.+.....
T Consensus 139 ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 193 (211)
T cd03298 139 LARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAK 193 (211)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 45556677889999987332 334455555555432 23667888888766543
No 460
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.93 E-value=0.57 Score=50.60 Aligned_cols=105 Identities=19% Similarity=0.198 Sum_probs=56.4
Q ss_pred CCEEEEEEecCCChHHH-HHHHHhcCcccccccceEEEEEeC-CcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHh
Q 039167 203 GPHIISLVGMGGIGKTT-LAQFAYNNGDVEKNFEKRIWVCVS-DPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHV 280 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 280 (923)
.-++|.++|+.|||||| ||+..+.-. ....=..+..++.. -.....+-++.-++-++.+..-..+..++...+...
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~-~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l- 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYV-MLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL- 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHH-hhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-
Confidence 37899999999999986 555444421 11222345555432 223334444444455554444444555555544433
Q ss_pred cCCceEEEecCCCCC--ChhhHHHhHHhhhcC
Q 039167 281 AGKKLLLVLDDVWNE--NFHKWEQFNNCLKNC 310 (923)
Q Consensus 281 ~~kr~LlVlDdv~~~--~~~~~~~l~~~l~~~ 310 (923)
++. =+|.+|-+... +....+++..++...
T Consensus 280 ~~~-d~ILVDTaGrs~~D~~~i~el~~~~~~~ 310 (407)
T COG1419 280 RDC-DVILVDTAGRSQYDKEKIEELKELIDVS 310 (407)
T ss_pred hcC-CEEEEeCCCCCccCHHHHHHHHHHHhcc
Confidence 233 56667866443 234555666666554
No 461
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.93 E-value=0.37 Score=48.70 Aligned_cols=21 Identities=38% Similarity=0.496 Sum_probs=19.1
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 039167 206 IISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.|.|+|++|+||||+|+.+..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999876
No 462
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.90 E-value=0.13 Score=56.09 Aligned_cols=81 Identities=25% Similarity=0.286 Sum_probs=48.0
Q ss_pred CceecchhhHHHHHHHHhcC--------CCCCCCCCEEEEEEecCCChHHHHHHHHhcCccccccc---ceEEEEEeC-C
Q 039167 177 SEIFGRKDEKNELVDRLICE--------NSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNF---EKRIWVCVS-D 244 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s-~ 244 (923)
..++|.++.++.+..++... ........+-|.++|+.|+|||++|+.+... ....| +..-|...+ .
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~--l~~~fi~vD~t~f~e~Gyv 92 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGYV 92 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH--hCChheeecchhhccCCcc
Confidence 35788888888887777431 0000112467899999999999999999873 33333 222222211 1
Q ss_pred cccHHHHHHHHHHHH
Q 039167 245 PFDEFRIARAIIEAL 259 (923)
Q Consensus 245 ~~~~~~~~~~i~~~l 259 (923)
..+...+.+.+.+..
T Consensus 93 G~d~e~~ir~L~~~A 107 (443)
T PRK05201 93 GRDVESIIRDLVEIA 107 (443)
T ss_pred cCCHHHHHHHHHHHH
Confidence 224555555555444
No 463
>PRK00625 shikimate kinase; Provisional
Probab=93.88 E-value=0.04 Score=53.13 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHhcC
Q 039167 206 IISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.|.++||+|+||||+++.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999873
No 464
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=93.86 E-value=0.87 Score=47.34 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.2
Q ss_pred CEEEEEEecCCChHHHHHHHHhcC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
-.+++|+|..|.|||||++.+...
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~l~Gl 52 (254)
T PRK10418 29 GRVLALVGGSGSGKSLTCAAALGI 52 (254)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999764
No 465
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.84 E-value=0.24 Score=51.57 Aligned_cols=87 Identities=18% Similarity=0.142 Sum_probs=47.8
Q ss_pred CCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCC-----CC--CCcCHHHHHH
Q 039167 202 KGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGC-----LP--NFVEFQSLMQ 274 (923)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~-----~~--~~~~~~~~~~ 274 (923)
.+..+|.|+|.+|+|||||...+.+. ........ .+ ..+..+..+ ...+...+.. .. --.+...+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~--l~~~~~~~-VI-~gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~~ 175 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR--LKDSVPCA-VI-EGDQQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIAD 175 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--hccCCCEE-EE-CCCcCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHHH
Confidence 47899999999999999999999883 33333222 22 222222221 1122333221 00 0122334445
Q ss_pred HHHHHhcCCceEEEecCCCC
Q 039167 275 HIQKHVAGKKLLLVLDDVWN 294 (923)
Q Consensus 275 ~l~~~l~~kr~LlVlDdv~~ 294 (923)
.+........-++|++++.+
T Consensus 176 Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 176 AAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHHhhcCCcEEEEECCCC
Confidence 55554444557889999853
No 466
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=93.83 E-value=0.88 Score=51.56 Aligned_cols=54 Identities=11% Similarity=0.085 Sum_probs=32.9
Q ss_pred HHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcC-CCCcEEEEEecchHHHHH
Q 039167 275 HIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNC-LYGSKILITTRKEAVARI 328 (923)
Q Consensus 275 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~~ 328 (923)
.+.+.+...+-+++||+.-.. +......+...+... ..|..||++|.+......
T Consensus 153 aLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~ 208 (549)
T PRK13545 153 GFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKS 208 (549)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence 456667778889999987332 233334444444322 246678899988665543
No 467
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=93.80 E-value=0.93 Score=46.18 Aligned_cols=60 Identities=13% Similarity=0.229 Sum_probs=35.3
Q ss_pred HHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcCCCCcEEEEEecchHHHHHhcccceEeC
Q 039167 276 IQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNCLYGSKILITTRKEAVARIMGSTNIISV 337 (923)
Q Consensus 276 l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l 337 (923)
+.+.+-.++-++++|+--.. +....+.+...+.....+..||++|.+...... .++++.+
T Consensus 161 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~i~~l 221 (226)
T cd03248 161 IARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVER--ADQILVL 221 (226)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh--CCEEEEe
Confidence 55566678889999987432 334444555555433234568888887665542 3445444
No 468
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.79 E-value=0.26 Score=54.49 Aligned_cols=86 Identities=17% Similarity=0.185 Sum_probs=47.7
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCC-cccHHHHHHHHHHHHhCC-------CCCCcCHHH---
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSD-PFDEFRIARAIIEALTGC-------LPNFVEFQS--- 271 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 271 (923)
.-..++|+|..|+|||||++.+..... . +..+.+.+.. .-...++.+..+..-+.. ..+..-...
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~---~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTD---A-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC---C-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 335799999999999999999987422 1 2223333333 333444544443332111 011111111
Q ss_pred --HHHHHHHHh--cCCceEEEecCC
Q 039167 272 --LMQHIQKHV--AGKKLLLVLDDV 292 (923)
Q Consensus 272 --~~~~l~~~l--~~kr~LlVlDdv 292 (923)
..-.+.+++ +++.+|+++||+
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 122244555 589999999999
No 469
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.77 E-value=0.038 Score=55.12 Aligned_cols=21 Identities=43% Similarity=0.569 Sum_probs=19.5
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 039167 206 IISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~ 226 (923)
+|+|.|+.|+||||+|+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 470
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.77 E-value=0.66 Score=48.11 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=21.9
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.-.+++|+|+.|.|||||.+.+..-
T Consensus 25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 25 EGQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999764
No 471
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=93.76 E-value=0.54 Score=55.57 Aligned_cols=61 Identities=13% Similarity=0.192 Sum_probs=35.4
Q ss_pred HHHHHhcCCceEEEecCCCC-CChhhHHHhHHhhhcCCCCcEEEEEecchHHHHHhcccceEeC
Q 039167 275 HIQKHVAGKKLLLVLDDVWN-ENFHKWEQFNNCLKNCLYGSKILITTRKEAVARIMGSTNIISV 337 (923)
Q Consensus 275 ~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l 337 (923)
.+.+.+-.++-++++|+.-+ -|....+.+...+.....+.-||++|.+.+.... .++++.+
T Consensus 481 ~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~--~d~i~~l 542 (585)
T TIGR01192 481 AIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRN--ADLVLFL 542 (585)
T ss_pred HHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHc--CCEEEEE
Confidence 35666677888999998732 2344555566655544345556666666554443 3444444
No 472
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.76 E-value=0.12 Score=54.72 Aligned_cols=83 Identities=23% Similarity=0.187 Sum_probs=48.7
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCC-----CCcCHHHHHHHHH
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLP-----NFVEFQSLMQHIQ 277 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 277 (923)
.-+++-|+|+.|+||||||-++.. ..+..-..++|+.....++... ++.++.... .....++....+.
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHH
Confidence 457999999999999999988876 3444445788999888776643 333432211 1123344445555
Q ss_pred HHhc-CCceEEEecCC
Q 039167 278 KHVA-GKKLLLVLDDV 292 (923)
Q Consensus 278 ~~l~-~kr~LlVlDdv 292 (923)
+.++ +.--++|+|-|
T Consensus 125 ~lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSV 140 (322)
T ss_dssp HHHHTTSESEEEEE-C
T ss_pred HHhhcccccEEEEecC
Confidence 5554 33457788877
No 473
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.76 E-value=0.14 Score=51.04 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.7
Q ss_pred CCCEEEEEEecCCChHHHHHHHHhc
Q 039167 202 KGPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
....+|+|+|++|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3667999999999999999999987
No 474
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=93.75 E-value=0.71 Score=55.98 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.0
Q ss_pred CEEEEEEecCCChHHHHHHHHhcC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
-..++|+|..|.|||||++.+..-
T Consensus 491 G~~iaIvG~sGsGKSTLlklL~gl 514 (694)
T TIGR03375 491 GEKVAIIGRIGSGKSTLLKLLLGL 514 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999653
No 475
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.74 E-value=0.19 Score=52.34 Aligned_cols=23 Identities=35% Similarity=0.300 Sum_probs=18.0
Q ss_pred EEEEEEecCCChHHHHHHHHhcC
Q 039167 205 HIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
..|.|.|.+|+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 36889999999999999999873
No 476
>COG4240 Predicted kinase [General function prediction only]
Probab=93.72 E-value=0.24 Score=48.20 Aligned_cols=83 Identities=16% Similarity=0.155 Sum_probs=54.4
Q ss_pred CCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHh-----CCCCCCcCHHHHHHHH
Q 039167 202 KGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALT-----GCLPNFVEFQSLMQHI 276 (923)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~-----~~~~~~~~~~~~~~~l 276 (923)
+++-+++|.|+-|.||||++..+++....+.- +.++..+..+-+-...-...++++.. ...++..|..-....+
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVL 126 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVL 126 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHH
Confidence 46889999999999999999999985333322 35555555444433444444555532 2345667777777778
Q ss_pred HHHhcCCce
Q 039167 277 QKHVAGKKL 285 (923)
Q Consensus 277 ~~~l~~kr~ 285 (923)
....+++.-
T Consensus 127 nai~~g~~~ 135 (300)
T COG4240 127 NAIARGGPT 135 (300)
T ss_pred HHHhcCCCC
Confidence 777777743
No 477
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.72 E-value=0.09 Score=53.70 Aligned_cols=62 Identities=26% Similarity=0.260 Sum_probs=40.5
Q ss_pred HHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHH
Q 039167 187 NELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIA 252 (923)
Q Consensus 187 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 252 (923)
.+++..+... ..+..+|+|.|.+|+|||||...+-....-+++=-.++=|.-|.+++--.++
T Consensus 38 ~~ll~~l~p~----tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 38 RELLRALYPR----TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHHhhc----CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccc
Confidence 4555555443 3477899999999999999998876643333443345555556666544433
No 478
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=93.71 E-value=0.99 Score=45.68 Aligned_cols=81 Identities=14% Similarity=0.124 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCCceEEEecCCCC-CChhhHHHhHHhhhcC--CCCcEEEEEecc-hHHHHHhcccceEeCCCCChHHHH
Q 039167 271 SLMQHIQKHVAGKKLLLVLDDVWN-ENFHKWEQFNNCLKNC--LYGSKILITTRK-EAVARIMGSTNIISVNVLSGMECW 346 (923)
Q Consensus 271 ~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~iivTtR~-~~v~~~~~~~~~~~l~~L~~~~~~ 346 (923)
.....+...|-.+.-++.||.+== -+...-+.++.++..- ..++-|+.||.+ .+++..+...-.+.-+.+=.+...
T Consensus 162 RmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l 241 (325)
T COG4586 162 RMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTL 241 (325)
T ss_pred HHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccH
Confidence 334445555556777889996511 1224455677777643 358899999997 456666555444555555444333
Q ss_pred HHHHH
Q 039167 347 LVFES 351 (923)
Q Consensus 347 ~lf~~ 351 (923)
.=|..
T Consensus 242 ~~l~~ 246 (325)
T COG4586 242 AQLQE 246 (325)
T ss_pred HHHHH
Confidence 33333
No 479
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.71 E-value=0.29 Score=54.43 Aligned_cols=89 Identities=21% Similarity=0.147 Sum_probs=52.5
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcc-cHHHHHHHHHHHHhCC-------CCCCcCHH----
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPF-DEFRIARAIIEALTGC-------LPNFVEFQ---- 270 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 270 (923)
.-+-++|.|.+|+|||||+.++....... +=+.++++-+++.. ...++.+.+...-... ..+..-..
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 34578999999999999998876532211 11356677776654 3455555555431111 01111111
Q ss_pred -HHHHHHHHHh---cCCceEEEecCC
Q 039167 271 -SLMQHIQKHV---AGKKLLLVLDDV 292 (923)
Q Consensus 271 -~~~~~l~~~l---~~kr~LlVlDdv 292 (923)
...-.+.+++ +++.+|+++||+
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecch
Confidence 1123355665 679999999999
No 480
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.70 E-value=0.028 Score=33.13 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=13.3
Q ss_pred CCcEEecCCCccccccCccccC
Q 039167 611 NLEHLNVNCCVKLRELPQGIGR 632 (923)
Q Consensus 611 ~L~~L~L~~~~~l~~lp~~i~~ 632 (923)
+|++|+|++|. ++.+|.++++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT
T ss_pred CccEEECCCCc-CEeCChhhcC
Confidence 46677777774 6666665544
No 481
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.66 E-value=2 Score=43.82 Aligned_cols=175 Identities=18% Similarity=0.171 Sum_probs=90.5
Q ss_pred ceecchhhHHHHHHHHhcCCC------CCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHH
Q 039167 178 EIFGRKDEKNELVDRLICENS------IEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRI 251 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 251 (923)
++.|.+...+.|.+...-+-. ......+-|.++|++|.||+-||++|.... .. -|.+||... +
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA--nS-----TFFSvSSSD----L 202 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA--NS-----TFFSVSSSD----L 202 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc--CC-----ceEEeehHH----H
Confidence 467888888887775532210 012245789999999999999999999842 22 233444321 1
Q ss_pred HHHHHHHHhCCCCCCcCHHHHHHHHHHHh-cCCceEEEecCCCC-------CChhhHHHhHHhhh-------cCCCCcEE
Q 039167 252 ARAIIEALTGCLPNFVEFQSLMQHIQKHV-AGKKLLLVLDDVWN-------ENFHKWEQFNNCLK-------NCLYGSKI 316 (923)
Q Consensus 252 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~-------~~~~~~~~l~~~l~-------~~~~gs~i 316 (923)
..... .+.+.+...+.+.- ..|+-+|.+|.+.. .+.+.-..+..-|- ....|.-|
T Consensus 203 ----vSKWm------GESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLV 272 (439)
T KOG0739|consen 203 ----VSKWM------GESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLV 272 (439)
T ss_pred ----HHHHh------ccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEE
Confidence 11111 12244455555544 46888999998842 11223333333221 11235555
Q ss_pred EEEecchHHHHHh-c--ccceEeCCCCChHHHH-HHHHHhhcCCCCccchhhHHHHHHHHHHhcCC
Q 039167 317 LITTRKEAVARIM-G--STNIISVNVLSGMECW-LVFESLAFVGKSMEERENLEKIGREITRKCKG 378 (923)
Q Consensus 317 ivTtR~~~v~~~~-~--~~~~~~l~~L~~~~~~-~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G 378 (923)
+-.|...=+.... . -...+-+ ||++..|. .+|+-+.+.....-..+++ +++.++..|
T Consensus 273 LgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~tp~~LT~~d~----~eL~~kTeG 333 (439)
T KOG0739|consen 273 LGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDTPHVLTEQDF----KELARKTEG 333 (439)
T ss_pred EecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCCCccccchhhH----HHHHhhcCC
Confidence 5567665443321 1 1222333 45555555 4666655433322223443 445555555
No 482
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.66 E-value=0.041 Score=53.59 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=20.1
Q ss_pred EEEEEecCCChHHHHHHHHhcC
Q 039167 206 IISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999884
No 483
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=93.65 E-value=0.22 Score=57.11 Aligned_cols=130 Identities=13% Similarity=0.113 Sum_probs=71.2
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCc-ccccccceEEEEEeCCcccHHHHHHHHH
Q 039167 178 EIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNG-DVEKNFEKRIWVCVSDPFDEFRIARAII 256 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 256 (923)
+++|....+.++.+.+..-. .....|.|.|..|+||+++|+.+++.. +....| +-+++..-. ...+.
T Consensus 213 ~iiG~S~~m~~~~~~i~~~A----~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pf---v~inC~~l~--e~lle--- 280 (526)
T TIGR02329 213 DLLGASAPMEQVRALVRLYA----RSDATVLILGESGTGKELVAQAIHQLSGRRDFPF---VAINCGAIA--ESLLE--- 280 (526)
T ss_pred heeeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCE---EEeccccCC--hhHHH---
Confidence 58999988888888775432 134578999999999999999998742 112222 233333221 12222
Q ss_pred HHHhCCCCCCcCHH---HHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCC---C--------CcEEEEEecc
Q 039167 257 EALTGCLPNFVEFQ---SLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCL---Y--------GSKILITTRK 322 (923)
Q Consensus 257 ~~l~~~~~~~~~~~---~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~---~--------gs~iivTtR~ 322 (923)
..+.+...+..... .....+. ....=-|+||++.+........+...+.... - ..|||.||..
T Consensus 281 seLFG~~~gaftga~~~~~~Gl~e---~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~ 357 (526)
T TIGR02329 281 AELFGYEEGAFTGARRGGRTGLIE---AAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHC 357 (526)
T ss_pred HHhcCCcccccccccccccccchh---hcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCC
Confidence 22322211110000 0000000 1223458999997766666666777665432 1 2378888764
No 484
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=93.64 E-value=0.74 Score=48.33 Aligned_cols=52 Identities=13% Similarity=0.271 Sum_probs=31.5
Q ss_pred HHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcCCCCcEEEEEecchHHHH
Q 039167 276 IQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNCLYGSKILITTRKEAVAR 327 (923)
Q Consensus 276 l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 327 (923)
+.+.+-.++=++++|+.... +......+...+.....+.-||++|.+.+...
T Consensus 149 LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~ 201 (275)
T cd03289 149 LARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAML 201 (275)
T ss_pred HHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHH
Confidence 45556667789999987432 33444555555554344666777777655444
No 485
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=93.64 E-value=0.57 Score=55.55 Aligned_cols=24 Identities=33% Similarity=0.500 Sum_probs=20.9
Q ss_pred CEEEEEEecCCChHHHHHHHHhcC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
-..++|+|..|.|||||++.+..-
T Consensus 369 G~~~aIvG~sGsGKSTLl~ll~gl 392 (582)
T PRK11176 369 GKTVALVGRSGSGKSTIANLLTRF 392 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 357999999999999999999653
No 486
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.62 E-value=0.44 Score=49.35 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=19.1
Q ss_pred EEEEecCCChHHHHHHHHhcC
Q 039167 207 ISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 207 i~I~G~gGiGKTtLa~~v~~~ 227 (923)
|.++|++|+||||+|+.+...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999999873
No 487
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.60 E-value=0.21 Score=54.96 Aligned_cols=85 Identities=14% Similarity=0.150 Sum_probs=50.6
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCccc-HHHHHHHHHHHHhCC-------CCCCcCHH-----
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFD-EFRIARAIIEALTGC-------LPNFVEFQ----- 270 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~----- 270 (923)
-..++|+|..|+|||||++.+.+.. ..+..+++-+++... ..++.+.++..-+.. ..+..-..
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 3579999999999999999998732 224566666666543 344555543331111 01111111
Q ss_pred HHHHHHHHHh--cCCceEEEecCC
Q 039167 271 SLMQHIQKHV--AGKKLLLVLDDV 292 (923)
Q Consensus 271 ~~~~~l~~~l--~~kr~LlVlDdv 292 (923)
...-.+.+++ +++.+|+++||+
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCh
Confidence 1112244444 689999999999
No 488
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=93.58 E-value=0.83 Score=48.45 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=21.7
Q ss_pred CEEEEEEecCCChHHHHHHHHhcC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
-.++++.|+.|+|||||.+.+...
T Consensus 31 Gei~gllG~NGAGKTTllk~l~gl 54 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLLKILAGL 54 (293)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 369999999999999999999774
No 489
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.57 E-value=0.18 Score=54.01 Aligned_cols=114 Identities=11% Similarity=0.041 Sum_probs=56.2
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAG 282 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 282 (923)
.-..+.|+|..|.||||+++.+... ..... ..+.+.-........ .....-...........-...+.+...++.
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~--~~~~~-~iv~ied~~El~~~~--~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~ 217 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDE--IPKDE-RIITIEDTREIFLPH--PNYVHLFYSKGGQGLAKVTPKDLLQSCLRM 217 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcc--CCccc-cEEEEcCccccCCCC--CCEEEEEecCCCCCcCccCHHHHHHHHhcC
Confidence 3468999999999999999988863 21111 122221111110000 000000000000011112334556677888
Q ss_pred CceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecchHHH
Q 039167 283 KKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRKEAVA 326 (923)
Q Consensus 283 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 326 (923)
..-.||+|.+-. .+.++.+ ..+..+..| ++.|+...++.
T Consensus 218 ~pd~ii~gE~r~--~e~~~~l-~a~~~g~~~--~i~T~Ha~~~~ 256 (308)
T TIGR02788 218 RPDRIILGELRG--DEAFDFI-RAVNTGHPG--SITTLHAGSPE 256 (308)
T ss_pred CCCeEEEeccCC--HHHHHHH-HHHhcCCCe--EEEEEeCCCHH
Confidence 888999999954 3444433 333333222 47777665443
No 490
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.54 E-value=0.4 Score=53.89 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.6
Q ss_pred CEEEEEEecCCChHHHHHHHHhcC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.+|++++|+.|+||||++.++...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH
Confidence 479999999999999999988863
No 491
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.52 E-value=0.053 Score=53.01 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHhcC
Q 039167 205 HIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.++.|+|+.|+||||+++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998774
No 492
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=93.51 E-value=2.2 Score=44.60 Aligned_cols=129 Identities=13% Similarity=0.068 Sum_probs=74.6
Q ss_pred HHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCccc------------ccccceEEEEE-eCCcccHHHHH
Q 039167 186 KNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDV------------EKNFEKRIWVC-VSDPFDEFRIA 252 (923)
Q Consensus 186 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------------~~~F~~~~wv~-~s~~~~~~~~~ 252 (923)
-+++...+... .-.....++|+.|+||+++|..+....-- ..|=| ..|+. ....
T Consensus 6 ~~~L~~~i~~~-----rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD-~~~i~p~~~~------- 72 (290)
T PRK05917 6 WEALIQRVRDQ-----KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPD-IHEFSPQGKG------- 72 (290)
T ss_pred HHHHHHHHHcC-----CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCC-EEEEecCCCC-------
Confidence 45556655432 24668889999999999999777552100 00111 11111 0000
Q ss_pred HHHHHHHhCCCCCCcCHHHHHHHHHHHh-----cCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecc-hHHH
Q 039167 253 RAIIEALTGCLPNFVEFQSLMQHIQKHV-----AGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRK-EAVA 326 (923)
Q Consensus 253 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~ 326 (923)
.....++.. .+.+.+ .+++=++|+|++...+.+.+..+...+.....++.+|++|.+ ..+.
T Consensus 73 ------------~~I~idqiR-~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll 139 (290)
T PRK05917 73 ------------RLHSIETPR-AIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLP 139 (290)
T ss_pred ------------CcCcHHHHH-HHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCc
Confidence 001233322 233333 355668899999887878899999988777667776666665 4443
Q ss_pred -HHhcccceEeCCCC
Q 039167 327 -RIMGSTNIISVNVL 340 (923)
Q Consensus 327 -~~~~~~~~~~l~~L 340 (923)
+.......+.+.++
T Consensus 140 ~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 140 PTIRSRSLSIHIPME 154 (290)
T ss_pred HHHHhcceEEEccch
Confidence 22344667777765
No 493
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.51 E-value=0.075 Score=50.80 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=22.5
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 5679999999999999999999873
No 494
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.45 E-value=0.51 Score=49.77 Aligned_cols=53 Identities=13% Similarity=0.138 Sum_probs=32.2
Q ss_pred HHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcC--CCCcEEEEEecchHHHHH
Q 039167 276 IQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNC--LYGSKILITTRKEAVARI 328 (923)
Q Consensus 276 l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtR~~~v~~~ 328 (923)
+.+.+..++-++++|+.-.. +......+...+..- ..|..||++|.+......
T Consensus 151 lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~ 206 (277)
T PRK13642 151 VAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAAS 206 (277)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh
Confidence 55566667789999987332 334445555555422 226678888877666543
No 495
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=93.44 E-value=0.83 Score=53.37 Aligned_cols=52 Identities=13% Similarity=0.241 Sum_probs=32.6
Q ss_pred HHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcCCCCcEEEEEecchHHHHH
Q 039167 275 HIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNCLYGSKILITTRKEAVARI 328 (923)
Q Consensus 275 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 328 (923)
.+.+.+-.++-+++||.-... +...-..+...+.. .|..||++|.+......
T Consensus 165 ~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~ 217 (530)
T PRK15064 165 LLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNS 217 (530)
T ss_pred HHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHh
Confidence 355566677889999987432 22334445555543 35568899988765543
No 496
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=93.44 E-value=0.44 Score=50.96 Aligned_cols=54 Identities=19% Similarity=0.144 Sum_probs=32.4
Q ss_pred HHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcC-CCCcEEEEEecchHHHHH
Q 039167 275 HIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNC-LYGSKILITTRKEAVARI 328 (923)
Q Consensus 275 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~~ 328 (923)
.+.+.+-.++-+++||+--.. +...-..+...+... ..|..||+||.+...+..
T Consensus 134 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~ 189 (302)
T TIGR01188 134 DIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADK 189 (302)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHH
Confidence 355666778899999976322 223333344444322 236779999998765543
No 497
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.43 E-value=0.22 Score=47.89 Aligned_cols=22 Identities=41% Similarity=0.481 Sum_probs=19.5
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039167 205 HIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
..|.+.|.+|+||||+|+++..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 3577899999999999999887
No 498
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.42 E-value=0.37 Score=46.72 Aligned_cols=119 Identities=14% Similarity=0.021 Sum_probs=62.8
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEE--EEEeCCcccHHHHHHHHHHHH-----hCC-CCCCcC----HH
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRI--WVCVSDPFDEFRIARAIIEAL-----TGC-LPNFVE----FQ 270 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~--wv~~s~~~~~~~~~~~i~~~l-----~~~-~~~~~~----~~ 270 (923)
....|-|+|..|-||||.|..+.-. .....+...+ |+.-.........+..+- .+ +.. .....+ ..
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~r-a~g~G~~V~ivQFlKg~~~~GE~~~l~~l~-~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALR-AVGHGKKVGVVQFIKGAWSTGERNLLEFGG-GVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHH-HHHCCCeEEEEEEecCCCccCHHHHHhcCC-CcEEEECCCCCcccCCCcHHHHH
Confidence 3468999999999999999766542 1122222211 222221223333333310 01 000 000011 11
Q ss_pred ---HHHHHHHHHhc-CCceEEEecCCCC---CChhhHHHhHHhhhcCCCCcEEEEEecch
Q 039167 271 ---SLMQHIQKHVA-GKKLLLVLDDVWN---ENFHKWEQFNNCLKNCLYGSKILITTRKE 323 (923)
Q Consensus 271 ---~~~~~l~~~l~-~kr~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 323 (923)
......++.+. ++-=|+|||.+-. ...-+.+.+...+.....+.-||+|=|+.
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 12223344444 4455999998821 12234677888887777788999999974
No 499
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.42 E-value=0.21 Score=54.64 Aligned_cols=40 Identities=28% Similarity=0.289 Sum_probs=29.5
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSD 244 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 244 (923)
.-.++.|.|.+|+|||||+.++... ....-..++|++...
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EE 120 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEE 120 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCc
Confidence 4569999999999999999988763 322334677776544
No 500
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.42 E-value=0.73 Score=53.87 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.8
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.-..++|+|+.|.|||||++.+...
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4468999999999999999999653
Done!