Query 039167
Match_columns 923
No_of_seqs 567 out of 4307
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 11:32:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039167.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039167hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.2E-42 4E-47 403.3 23.7 285 180-487 131-448 (549)
2 1vt4_I APAF-1 related killer D 100.0 6.9E-37 2.4E-41 355.7 22.2 270 178-486 129-421 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1.8E-34 6E-39 372.7 22.7 289 174-487 121-429 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.8E-31 6.1E-36 315.0 23.6 284 175-485 122-427 (591)
5 3rgz_A Protein brassinosteroid 99.9 5E-27 1.7E-31 284.9 13.3 388 507-921 269-766 (768)
6 4eco_A Uncharacterized protein 99.9 1.3E-24 4.4E-29 257.5 16.2 348 506-899 205-600 (636)
7 4ecn_A Leucine-rich repeat pro 99.9 7.7E-24 2.6E-28 254.6 21.6 332 524-899 482-840 (876)
8 4eco_A Uncharacterized protein 99.9 1.2E-24 4.2E-29 257.7 11.1 312 548-898 198-578 (636)
9 3rgz_A Protein brassinosteroid 99.9 6.3E-24 2.2E-28 257.7 16.7 290 577-897 309-691 (768)
10 4fmz_A Internalin; leucine ric 99.9 4.2E-23 1.4E-27 226.5 19.0 304 528-897 41-344 (347)
11 3v47_A TOLL-like receptor 5B a 99.9 6.7E-23 2.3E-27 234.0 19.7 358 506-896 29-405 (455)
12 4ecn_A Leucine-rich repeat pro 99.9 2.7E-23 9.3E-28 249.9 17.0 329 524-898 441-818 (876)
13 2z7x_B TOLL-like receptor 1, v 99.9 1.7E-22 5.7E-27 234.9 21.6 355 507-897 21-479 (520)
14 3vq2_A TLR4, TOLL-like recepto 99.9 2.3E-22 7.7E-27 238.5 22.5 146 506-661 31-180 (606)
15 1ziw_A TOLL-like receptor 3; i 99.9 1.3E-22 4.5E-27 243.9 20.5 156 506-671 24-184 (680)
16 3o6n_A APL1; leucine-rich repe 99.9 2.7E-22 9.2E-27 223.8 21.1 306 528-898 42-351 (390)
17 3t6q_A CD180 antigen; protein- 99.9 2E-22 6.7E-27 239.1 21.1 275 506-806 32-361 (606)
18 2z81_A CD282 antigen, TOLL-lik 99.9 1.5E-22 5E-27 237.1 17.9 362 507-897 26-508 (549)
19 3oja_B Anopheles plasmodium-re 99.9 4E-22 1.4E-26 234.8 20.8 306 528-898 48-357 (597)
20 3j0a_A TOLL-like receptor 5; m 99.9 8.8E-22 3E-26 241.4 23.3 278 505-806 22-373 (844)
21 3vq2_A TLR4, TOLL-like recepto 99.9 2.3E-22 7.9E-27 238.4 17.5 119 506-634 55-177 (606)
22 1o6v_A Internalin A; bacterial 99.9 1.6E-21 5.3E-26 222.8 22.5 320 508-898 47-387 (466)
23 2z63_A TOLL-like receptor 4, v 99.9 2.4E-22 8.2E-27 236.6 16.0 145 506-660 27-175 (570)
24 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.2E-21 4E-26 229.6 21.3 141 744-897 351-508 (562)
25 2z7x_B TOLL-like receptor 1, v 99.9 4.5E-22 1.5E-26 231.2 17.6 336 531-897 21-455 (520)
26 3t6q_A CD180 antigen; protein- 99.9 5.8E-22 2E-26 235.0 18.6 276 588-897 256-534 (606)
27 2id5_A Lingo-1, leucine rich r 99.9 2.5E-21 8.4E-26 222.3 21.1 295 531-897 32-331 (477)
28 4fmz_A Internalin; leucine ric 99.9 4.9E-21 1.7E-25 210.0 20.3 303 506-873 43-345 (347)
29 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.4E-21 1.8E-25 224.0 21.7 337 531-897 52-484 (562)
30 3bz5_A Internalin-J, INLJ; leu 99.9 1.5E-20 5E-25 212.9 24.5 308 526-892 37-346 (457)
31 1o6v_A Internalin A; bacterial 99.9 5.7E-21 1.9E-25 218.2 20.9 312 528-897 43-364 (466)
32 3o6n_A APL1; leucine-rich repe 99.9 4.7E-21 1.6E-25 213.7 17.5 305 506-873 44-351 (390)
33 4fcg_A Uncharacterized protein 99.9 3.9E-21 1.3E-25 208.0 15.9 229 554-892 79-308 (328)
34 3j0a_A TOLL-like receptor 5; m 99.8 7E-21 2.4E-25 233.4 18.1 326 529-892 22-388 (844)
35 3v47_A TOLL-like receptor 5B a 99.8 9.8E-21 3.4E-25 216.0 17.9 333 531-897 30-382 (455)
36 3oja_B Anopheles plasmodium-re 99.8 7.1E-21 2.4E-25 224.2 16.9 304 507-873 51-357 (597)
37 2z63_A TOLL-like receptor 4, v 99.8 1.9E-20 6.6E-25 220.3 20.4 144 531-684 28-175 (570)
38 2id5_A Lingo-1, leucine rich r 99.8 1.5E-20 5.2E-25 215.7 17.1 272 506-806 31-307 (477)
39 2z81_A CD282 antigen, TOLL-lik 99.8 1.8E-20 6.2E-25 219.4 17.2 179 531-726 26-209 (549)
40 3bz5_A Internalin-J, INLJ; leu 99.8 2E-19 6.8E-24 203.5 23.1 307 506-877 41-354 (457)
41 1ziw_A TOLL-like receptor 3; i 99.8 5.6E-20 1.9E-24 221.0 18.9 326 531-892 25-360 (680)
42 1ogq_A PGIP-2, polygalacturona 99.8 7.2E-21 2.5E-25 204.7 9.2 202 531-806 50-255 (313)
43 1xku_A Decorin; proteoglycan, 99.8 2.9E-19 9.8E-24 194.3 19.2 239 532-806 32-274 (330)
44 2ft3_A Biglycan; proteoglycan, 99.8 2.9E-19 1E-23 194.3 19.3 241 532-812 34-280 (332)
45 1ogq_A PGIP-2, polygalacturona 99.8 6.3E-20 2.2E-24 197.3 12.5 249 507-808 50-304 (313)
46 4fcg_A Uncharacterized protein 99.8 3.3E-20 1.1E-24 200.8 9.7 221 530-804 80-310 (328)
47 2ft3_A Biglycan; proteoglycan, 99.8 3.9E-19 1.3E-23 193.3 16.2 292 556-896 33-330 (332)
48 4g8a_A TOLL-like receptor 4; l 99.8 4.2E-19 1.4E-23 211.9 17.9 146 506-661 51-200 (635)
49 2z80_A TOLL-like receptor 2, v 99.8 5.6E-19 1.9E-23 193.9 12.7 278 529-897 29-312 (353)
50 1xku_A Decorin; proteoglycan, 99.8 1.2E-18 4.1E-23 189.4 15.1 291 555-892 30-326 (330)
51 4g8a_A TOLL-like receptor 4; l 99.7 2.6E-17 8.8E-22 196.4 21.2 131 531-671 52-186 (635)
52 1jl5_A Outer protein YOPM; leu 99.7 3.9E-17 1.3E-21 184.6 20.9 156 507-694 91-246 (454)
53 3g06_A SSPH2 (leucine-rich rep 99.7 3.1E-17 1.1E-21 190.9 20.6 97 531-651 61-157 (622)
54 2z66_A Variable lymphocyte rec 99.7 2.1E-17 7.1E-22 177.5 16.2 80 556-644 28-111 (306)
55 2z66_A Variable lymphocyte rec 99.7 8.4E-18 2.9E-22 180.6 10.9 228 531-806 28-259 (306)
56 1jl5_A Outer protein YOPM; leu 99.7 4.1E-17 1.4E-21 184.3 14.6 314 507-897 11-348 (454)
57 1z7x_W Ribonuclease inhibitor; 99.7 2.7E-20 9.4E-25 212.8 -11.9 364 508-897 4-409 (461)
58 3zyi_A Leucine-rich repeat-con 99.7 4.1E-17 1.4E-21 185.4 14.3 222 531-806 75-301 (452)
59 3zyj_A Leucine-rich repeat-con 99.7 5.4E-17 1.8E-21 183.7 14.2 222 531-806 64-290 (440)
60 3g06_A SSPH2 (leucine-rich rep 99.7 1.2E-16 4E-21 186.1 16.1 256 531-897 40-295 (622)
61 3zyj_A Leucine-rich repeat-con 99.7 3.1E-16 1.1E-20 177.5 19.1 111 766-897 179-290 (440)
62 1ozn_A Reticulon 4 receptor; N 99.7 5.5E-17 1.9E-21 172.2 11.9 219 534-806 14-236 (285)
63 3o53_A Protein LRIM1, AGAP0063 99.7 9.8E-18 3.3E-22 180.7 5.6 121 528-665 31-151 (317)
64 3zyi_A Leucine-rich repeat-con 99.7 3.8E-16 1.3E-20 177.3 19.0 112 765-897 189-301 (452)
65 2z80_A TOLL-like receptor 2, v 99.7 2.5E-17 8.6E-22 180.7 8.3 251 531-806 52-312 (353)
66 3ogk_B Coronatine-insensitive 99.7 5.7E-18 2E-22 200.1 2.5 332 529-897 162-524 (592)
67 1z7x_W Ribonuclease inhibitor; 99.7 1.3E-19 4.5E-24 207.1 -11.5 348 531-897 3-381 (461)
68 3o53_A Protein LRIM1, AGAP0063 99.7 6.1E-18 2.1E-22 182.4 1.1 289 533-903 12-303 (317)
69 3oja_A Leucine-rich immune mol 99.7 9.2E-17 3.2E-21 183.4 10.7 128 742-892 140-269 (487)
70 3ogk_B Coronatine-insensitive 99.7 1.8E-18 6.2E-23 204.4 -5.1 359 507-897 112-499 (592)
71 3qfl_A MLA10; coiled-coil, (CC 99.7 1.7E-16 5.8E-21 139.7 8.3 81 4-88 1-83 (115)
72 1ozn_A Reticulon 4 receptor; N 99.7 1.6E-16 5.6E-21 168.5 10.0 204 530-785 31-238 (285)
73 1wwl_A Monocyte differentiatio 99.6 6.7E-17 2.3E-21 173.7 5.8 205 528-806 40-264 (312)
74 2p1m_B Transport inhibitor res 99.6 1.5E-17 5E-22 196.8 -2.1 135 508-644 106-245 (594)
75 1wwl_A Monocyte differentiatio 99.6 1.5E-16 5.1E-21 171.0 5.5 223 533-806 65-307 (312)
76 2qen_A Walker-type ATPase; unk 99.6 5E-14 1.7E-18 154.3 25.0 278 175-485 10-333 (350)
77 1h6u_A Internalin H; cell adhe 99.6 2.7E-15 9.2E-20 160.6 14.1 197 527-812 37-233 (308)
78 1w5s_A Origin recognition comp 99.6 1.9E-14 6.6E-19 161.4 21.6 296 176-486 21-372 (412)
79 3oja_A Leucine-rich immune mol 99.6 8.9E-16 3E-20 175.2 10.1 216 529-806 32-248 (487)
80 2ast_B S-phase kinase-associat 99.6 3.9E-16 1.3E-20 170.1 2.8 101 533-645 49-153 (336)
81 1p9a_G Platelet glycoprotein I 99.6 4.3E-14 1.5E-18 149.6 17.9 80 553-644 7-87 (290)
82 1p9a_G Platelet glycoprotein I 99.6 2.5E-14 8.4E-19 151.5 15.7 199 526-806 5-206 (290)
83 2z62_A TOLL-like receptor 4, v 99.6 2.7E-14 9.2E-19 150.6 15.8 56 587-644 29-86 (276)
84 2z62_A TOLL-like receptor 4, v 99.6 9E-15 3.1E-19 154.2 12.0 127 531-668 28-159 (276)
85 3rfs_A Internalin B, repeat mo 99.6 1.5E-14 5.2E-19 151.9 13.4 81 553-644 38-119 (272)
86 2fna_A Conserved hypothetical 99.6 3E-13 1E-17 148.4 23.7 277 175-486 11-342 (357)
87 2o6q_A Variable lymphocyte rec 99.6 3.1E-14 1E-18 149.4 15.0 195 532-806 17-216 (270)
88 3rfs_A Internalin B, repeat mo 99.5 2.6E-14 8.7E-19 150.2 13.6 196 525-806 35-233 (272)
89 1h6u_A Internalin H; cell adhe 99.5 2E-14 7E-19 153.7 12.1 191 552-841 37-227 (308)
90 2p1m_B Transport inhibitor res 99.5 2.6E-17 8.9E-22 194.6 -11.7 338 528-898 102-493 (594)
91 2o6q_A Variable lymphocyte rec 99.5 1.4E-13 4.9E-18 144.3 16.7 77 557-644 17-95 (270)
92 2xwt_C Thyrotropin receptor; s 99.5 8.7E-14 3E-18 143.1 14.6 72 575-650 23-96 (239)
93 2xwt_C Thyrotropin receptor; s 99.5 2E-14 6.8E-19 148.0 8.8 96 557-661 32-130 (239)
94 4glp_A Monocyte differentiatio 99.5 1.1E-13 3.9E-18 148.4 13.9 229 530-806 63-305 (310)
95 2ast_B S-phase kinase-associat 99.5 1.2E-15 4E-20 166.2 -2.6 257 556-882 47-314 (336)
96 2ca6_A RAN GTPase-activating p 99.5 1E-15 3.6E-20 170.0 -3.9 249 524-806 25-314 (386)
97 4ay9_X Follicle-stimulating ho 99.4 1.6E-13 5.4E-18 149.9 11.0 99 747-870 155-255 (350)
98 2ca6_A RAN GTPase-activating p 99.4 5.4E-15 1.9E-19 164.2 -1.6 261 506-804 31-339 (386)
99 1h6t_A Internalin B; cell adhe 99.4 3.2E-13 1.1E-17 143.0 10.5 38 768-806 174-211 (291)
100 1m9s_A Internalin B; cell inva 99.4 4.2E-13 1.4E-17 156.1 11.5 170 553-784 40-209 (605)
101 4ay9_X Follicle-stimulating ho 99.4 1.6E-12 5.6E-17 141.8 15.1 229 574-892 20-253 (350)
102 2v1u_A Cell division control p 99.4 3.7E-11 1.3E-15 133.4 26.1 291 176-485 18-351 (387)
103 3m19_A Variable lymphocyte rec 99.4 3E-12 1E-16 132.5 14.4 172 557-806 15-190 (251)
104 4glp_A Monocyte differentiatio 99.4 8.3E-13 2.8E-17 141.6 8.6 81 585-665 90-176 (310)
105 1h6t_A Internalin B; cell adhe 99.4 3.6E-12 1.2E-16 135.0 13.3 122 527-665 42-163 (291)
106 2qby_B CDC6 homolog 3, cell di 99.3 5.2E-11 1.8E-15 131.9 21.9 289 176-485 19-339 (384)
107 3goz_A Leucine-rich repeat-con 99.3 1.7E-13 5.9E-18 150.4 1.5 233 531-806 22-295 (362)
108 1xeu_A Internalin C; cellular 99.3 1.3E-12 4.6E-17 135.9 8.2 166 555-806 18-183 (263)
109 1m9s_A Internalin B; cell inva 99.3 4E-12 1.4E-16 147.8 11.8 174 526-760 38-211 (605)
110 1fnn_A CDC6P, cell division co 99.3 1.1E-10 3.6E-15 129.7 22.6 294 177-485 17-351 (389)
111 3cvr_A Invasion plasmid antige 99.3 5.7E-12 1.9E-16 144.8 11.4 88 557-665 60-147 (571)
112 3m19_A Variable lymphocyte rec 99.3 2.1E-11 7E-16 126.2 14.4 129 531-670 35-167 (251)
113 4ezg_A Putative uncharacterize 99.3 1.5E-11 5.3E-16 121.9 12.9 147 507-668 44-191 (197)
114 3goz_A Leucine-rich repeat-con 99.3 9.3E-13 3.2E-17 144.5 4.2 241 506-785 21-297 (362)
115 2ell_A Acidic leucine-rich nuc 99.3 6.8E-12 2.3E-16 121.0 9.7 130 530-670 23-159 (168)
116 2je0_A Acidic leucine-rich nuc 99.3 6.4E-12 2.2E-16 118.5 7.8 127 529-666 15-148 (149)
117 4ezg_A Putative uncharacterize 99.3 9.6E-12 3.3E-16 123.4 9.4 129 527-668 40-169 (197)
118 3cvr_A Invasion plasmid antige 99.3 7.4E-12 2.5E-16 143.8 9.3 109 532-666 60-168 (571)
119 1njg_A DNA polymerase III subu 99.2 1.1E-10 3.7E-15 120.4 17.1 197 177-390 23-231 (250)
120 2qby_A CDC6 homolog 1, cell di 99.2 1.3E-10 4.3E-15 128.9 18.4 293 176-485 19-348 (386)
121 1a9n_A U2A', U2A'; complex (nu 99.2 2.5E-11 8.5E-16 117.9 9.7 133 525-670 13-152 (176)
122 3e6j_A Variable lymphocyte rec 99.2 4.5E-11 1.6E-15 121.6 11.4 128 531-669 40-170 (229)
123 2v9t_B SLIT homolog 2 protein 99.2 1.3E-10 4.4E-15 117.3 14.3 66 575-644 23-90 (220)
124 2o6s_A Variable lymphocyte rec 99.2 9E-11 3.1E-15 117.6 12.8 127 531-668 28-158 (208)
125 1xeu_A Internalin C; cellular 99.2 9.5E-11 3.2E-15 121.9 13.1 146 507-672 41-186 (263)
126 2v70_A SLIT-2, SLIT homolog 2 99.2 6E-11 2.1E-15 119.7 11.3 131 531-670 32-165 (220)
127 2ell_A Acidic leucine-rich nuc 99.2 5.2E-11 1.8E-15 114.8 8.9 135 506-653 23-165 (168)
128 2chg_A Replication factor C sm 99.2 1.1E-09 3.7E-14 111.0 19.1 186 177-388 17-205 (226)
129 2v9t_B SLIT homolog 2 protein 99.2 9.3E-11 3.2E-15 118.4 10.8 128 531-669 32-163 (220)
130 4b8c_D Glucose-repressible alc 99.1 4.7E-11 1.6E-15 142.6 8.6 111 549-669 217-327 (727)
131 3e6j_A Variable lymphocyte rec 99.1 3.3E-10 1.1E-14 115.2 13.6 130 506-645 39-170 (229)
132 2o6s_A Variable lymphocyte rec 99.1 3.9E-10 1.3E-14 112.9 11.6 127 508-644 29-158 (208)
133 1dce_A Protein (RAB geranylger 99.1 2.3E-10 7.9E-15 132.2 11.1 118 532-663 442-565 (567)
134 2je0_A Acidic leucine-rich nuc 99.1 1.2E-10 4.1E-15 109.7 7.1 125 506-642 16-148 (149)
135 2xot_A Amphoterin-induced prot 99.1 1.9E-10 6.6E-15 125.9 9.7 59 584-644 62-122 (361)
136 4b8c_D Glucose-repressible alc 99.0 4.2E-11 1.5E-15 143.0 3.2 120 524-654 217-336 (727)
137 2v70_A SLIT-2, SLIT homolog 2 99.0 6.8E-10 2.3E-14 112.0 11.4 123 534-669 14-140 (220)
138 1sxj_B Activator 1 37 kDa subu 99.0 5E-09 1.7E-13 112.8 16.3 186 177-388 21-211 (323)
139 1dce_A Protein (RAB geranylger 99.0 4E-10 1.4E-14 130.2 8.1 103 557-671 442-546 (567)
140 2xot_A Amphoterin-induced prot 99.0 3.8E-10 1.3E-14 123.5 7.2 130 531-671 39-176 (361)
141 1w8a_A SLIT protein; signaling 99.0 1.2E-09 4E-14 107.6 9.6 101 557-666 30-134 (192)
142 1a9n_A U2A', U2A'; complex (nu 99.0 8.4E-10 2.9E-14 107.1 7.9 126 506-645 18-151 (176)
143 1w8a_A SLIT protein; signaling 98.9 2.1E-09 7.4E-14 105.7 10.3 106 532-645 30-137 (192)
144 2wfh_A SLIT homolog 2 protein 98.9 4.9E-09 1.7E-13 103.1 11.4 120 534-667 13-135 (193)
145 1ds9_A Outer arm dynein; leuci 98.9 4.4E-11 1.5E-15 118.7 -5.6 106 526-644 43-150 (198)
146 1hqc_A RUVB; extended AAA-ATPa 98.8 5.7E-09 2E-13 112.4 10.0 182 177-390 12-214 (324)
147 1ds9_A Outer arm dynein; leuci 98.8 6E-11 2E-15 117.7 -5.4 111 548-670 40-152 (198)
148 2r9u_A Variable lymphocyte rec 98.8 6.4E-09 2.2E-13 100.3 8.7 105 534-652 15-122 (174)
149 2o6r_A Variable lymphocyte rec 98.8 1.6E-08 5.6E-13 98.0 11.6 104 531-644 28-134 (177)
150 1iqp_A RFCS; clamp loader, ext 98.8 6E-08 2E-12 104.5 17.3 188 177-390 25-215 (327)
151 2o6r_A Variable lymphocyte rec 98.8 1.7E-08 5.8E-13 97.9 10.3 125 533-671 9-137 (177)
152 2wfh_A SLIT homolog 2 protein 98.8 1.7E-08 5.8E-13 99.2 10.0 99 559-669 13-113 (193)
153 2r9u_A Variable lymphocyte rec 98.8 1.6E-08 5.5E-13 97.5 9.1 102 558-671 14-118 (174)
154 3g39_A Variable lymphocyte rec 98.7 2.3E-08 7.8E-13 96.1 9.0 99 533-644 11-112 (170)
155 3sb4_A Hypothetical leucine ri 98.7 8.4E-08 2.9E-12 103.3 14.1 289 529-892 23-328 (329)
156 3g39_A Variable lymphocyte rec 98.7 6E-08 2E-12 93.1 10.4 103 557-671 10-115 (170)
157 3te6_A Regulatory protein SIR3 98.7 3.2E-07 1.1E-11 96.1 15.9 170 178-353 21-211 (318)
158 1jr3_A DNA polymerase III subu 98.6 2.9E-07 1E-11 101.1 15.8 196 177-388 16-222 (373)
159 3sb4_A Hypothetical leucine ri 98.6 2.9E-08 9.8E-13 107.0 6.7 102 770-892 200-304 (329)
160 2chq_A Replication factor C sm 98.6 3.8E-07 1.3E-11 97.8 14.2 183 177-388 17-205 (319)
161 1jbk_A CLPB protein; beta barr 98.5 6.2E-07 2.1E-11 88.0 12.1 150 177-348 22-193 (195)
162 3bos_A Putative DNA replicatio 98.5 4.7E-07 1.6E-11 92.5 10.7 173 178-387 29-217 (242)
163 4fdw_A Leucine rich hypothetic 98.4 8E-06 2.7E-10 89.8 20.0 139 746-914 248-394 (401)
164 3pfi_A Holliday junction ATP-d 98.4 1.3E-05 4.6E-10 86.3 20.5 178 177-387 29-227 (338)
165 1sxj_D Activator 1 41 kDa subu 98.4 3E-06 1E-10 92.2 15.1 194 177-386 37-234 (353)
166 2ifg_A High affinity nerve gro 98.3 9.5E-07 3.2E-11 95.9 8.9 98 535-644 12-113 (347)
167 2ifg_A High affinity nerve gro 98.3 1.5E-06 5.1E-11 94.3 9.9 91 575-669 21-114 (347)
168 2z4s_A Chromosomal replication 98.3 1.1E-05 3.8E-10 89.7 17.1 160 204-384 130-303 (440)
169 4fdw_A Leucine rich hypothetic 98.2 4.3E-05 1.5E-09 84.0 20.1 260 530-871 112-380 (401)
170 3pvs_A Replication-associated 98.2 2.5E-05 8.6E-10 86.7 18.3 178 177-386 26-214 (447)
171 1sxj_E Activator 1 40 kDa subu 98.2 1.6E-05 5.4E-10 86.4 16.3 197 177-387 14-237 (354)
172 3uk6_A RUVB-like 2; hexameric 98.2 2.9E-05 1E-09 84.8 18.3 197 177-385 44-301 (368)
173 3un9_A NLR family member X1; l 98.2 7.8E-08 2.7E-12 104.9 -2.6 110 531-644 101-221 (372)
174 3h4m_A Proteasome-activating n 98.2 1.2E-05 4E-10 84.4 13.8 184 177-385 17-229 (285)
175 3u61_B DNA polymerase accessor 98.2 1.6E-05 5.6E-10 85.0 14.7 178 177-384 26-213 (324)
176 1a5t_A Delta prime, HOLB; zinc 98.1 4.7E-05 1.6E-09 81.6 17.5 170 183-386 8-204 (334)
177 2qz4_A Paraplegin; AAA+, SPG7, 98.1 2.8E-05 9.7E-10 80.3 15.1 187 177-386 6-221 (262)
178 3syl_A Protein CBBX; photosynt 98.1 2.2E-05 7.6E-10 83.4 14.4 161 178-354 32-218 (309)
179 2ra8_A Uncharacterized protein 98.1 2.1E-07 7.1E-12 100.6 -2.3 143 741-897 167-318 (362)
180 1sxj_A Activator 1 95 kDa subu 98.0 1.8E-05 6E-10 90.3 12.2 195 177-387 39-253 (516)
181 3n70_A Transport activator; si 98.0 1.1E-05 3.8E-10 74.7 8.6 114 178-322 2-115 (145)
182 1sxj_C Activator 1 40 kDa subu 98.0 8.2E-05 2.8E-09 80.1 16.4 174 178-383 26-208 (340)
183 1l8q_A Chromosomal replication 98.0 0.00016 5.6E-09 77.2 18.5 156 203-382 36-203 (324)
184 2p65_A Hypothetical protein PF 98.0 1.4E-05 4.9E-10 77.6 9.4 45 177-227 22-66 (187)
185 1d2n_A N-ethylmaleimide-sensit 98.0 5.3E-05 1.8E-09 78.7 13.9 171 177-378 33-228 (272)
186 4fs7_A Uncharacterized protein 98.0 6.8E-05 2.3E-09 82.7 15.2 305 525-893 65-374 (394)
187 3eie_A Vacuolar protein sortin 97.9 0.00018 6.2E-09 76.6 17.1 186 177-387 18-228 (322)
188 3d8b_A Fidgetin-like protein 1 97.9 0.00013 4.3E-09 79.0 15.2 187 177-388 84-296 (357)
189 2qp9_X Vacuolar protein sortin 97.9 0.00022 7.6E-09 76.9 17.0 186 177-386 51-260 (355)
190 3ec2_A DNA replication protein 97.9 3.3E-05 1.1E-09 74.6 9.4 121 182-322 19-142 (180)
191 2ra8_A Uncharacterized protein 97.9 2.3E-06 7.9E-11 92.4 0.7 65 712-783 251-318 (362)
192 3b9p_A CG5977-PA, isoform A; A 97.9 0.00061 2.1E-08 71.6 19.4 183 177-386 21-232 (297)
193 1xwi_A SKD1 protein; VPS4B, AA 97.9 0.00064 2.2E-08 72.2 19.4 188 177-387 12-223 (322)
194 1io0_A Tropomodulin; LRR prote 97.8 1.1E-05 3.9E-10 78.2 4.9 114 527-644 32-161 (185)
195 3un9_A NLR family member X1; l 97.8 6E-06 2E-10 89.9 3.0 135 507-645 101-250 (372)
196 2w58_A DNAI, primosome compone 97.8 2.2E-05 7.5E-10 77.5 6.5 118 185-322 37-158 (202)
197 3co5_A Putative two-component 97.8 2.7E-05 9.1E-10 71.9 6.5 111 177-322 4-115 (143)
198 2gno_A DNA polymerase III, gam 97.8 0.0002 6.7E-09 75.1 13.8 149 181-353 1-152 (305)
199 3e4g_A ATP synthase subunit S, 97.8 4.4E-06 1.5E-10 78.8 0.9 40 861-901 114-154 (176)
200 1in4_A RUVB, holliday junction 97.7 0.0018 6E-08 69.2 19.4 177 177-386 25-222 (334)
201 3vfd_A Spastin; ATPase, microt 97.7 0.00075 2.5E-08 73.9 16.9 186 177-386 115-325 (389)
202 3e4g_A ATP synthase subunit S, 97.7 6.2E-06 2.1E-10 77.8 0.1 93 772-876 61-154 (176)
203 4fcw_A Chaperone protein CLPB; 97.7 0.00034 1.2E-08 74.2 13.6 137 178-322 18-169 (311)
204 2zan_A Vacuolar protein sortin 97.6 0.0013 4.3E-08 73.3 18.3 187 177-386 134-344 (444)
205 3cf0_A Transitional endoplasmi 97.6 0.00089 3E-08 70.4 16.2 181 177-382 15-223 (301)
206 1ojl_A Transcriptional regulat 97.6 0.00025 8.4E-09 74.6 11.6 131 177-322 2-146 (304)
207 2bjv_A PSP operon transcriptio 97.6 0.00023 8E-09 73.5 11.2 131 178-322 7-150 (265)
208 1qvr_A CLPB protein; coiled co 97.6 0.00023 7.9E-09 86.4 12.3 154 177-352 170-344 (854)
209 2kjq_A DNAA-related protein; s 97.6 8.5E-05 2.9E-09 68.8 6.2 87 204-322 36-124 (149)
210 3hu3_A Transitional endoplasmi 97.5 0.0011 3.8E-08 74.2 15.8 184 177-385 204-413 (489)
211 3rw6_A Nuclear RNA export fact 97.5 8.8E-05 3E-09 75.6 6.2 82 553-640 167-257 (267)
212 3pxg_A Negative regulator of g 97.5 0.00044 1.5E-08 77.5 12.6 145 177-353 180-338 (468)
213 4fs7_A Uncharacterized protein 97.5 0.001 3.5E-08 73.1 15.1 283 549-893 64-351 (394)
214 1io0_A Tropomodulin; LRR prote 97.4 3.9E-05 1.3E-09 74.4 2.0 116 548-667 28-160 (185)
215 3rw6_A Nuclear RNA export fact 97.4 3.7E-05 1.3E-09 78.4 1.4 82 583-667 167-260 (267)
216 1r6b_X CLPA protein; AAA+, N-t 97.4 0.00099 3.4E-08 80.0 13.6 154 177-352 186-361 (758)
217 1lv7_A FTSH; alpha/beta domain 97.3 0.0048 1.7E-07 63.1 16.7 183 177-384 12-222 (257)
218 1ofh_A ATP-dependent HSL prote 97.3 0.0019 6.4E-08 68.3 13.9 51 177-227 15-73 (310)
219 3pxi_A Negative regulator of g 97.3 0.00037 1.3E-08 83.6 9.0 155 177-352 491-674 (758)
220 4gt6_A Cell surface protein; l 97.3 0.0094 3.2E-07 65.3 19.2 109 526-644 58-170 (394)
221 2c9o_A RUVB-like 1; hexameric 97.3 0.0048 1.6E-07 68.9 17.0 97 285-386 297-409 (456)
222 4b4t_J 26S protease regulatory 97.2 0.0058 2E-07 65.5 16.4 178 177-379 148-353 (405)
223 4b4t_K 26S protease regulatory 97.2 0.004 1.4E-07 67.8 14.4 51 177-227 172-229 (428)
224 4b4t_L 26S protease subunit RP 97.1 0.0065 2.2E-07 66.3 15.0 178 177-380 181-387 (437)
225 2ce7_A Cell division protein F 97.0 0.0052 1.8E-07 68.2 13.9 179 177-380 16-221 (476)
226 3pxi_A Negative regulator of g 97.0 0.0023 8E-08 76.6 11.9 148 177-353 180-338 (758)
227 4gt6_A Cell surface protein; l 97.0 0.0085 2.9E-07 65.7 15.0 109 524-644 80-192 (394)
228 4b4t_H 26S protease regulatory 96.9 0.014 4.8E-07 63.5 15.7 177 178-379 210-414 (467)
229 2qgz_A Helicase loader, putati 96.9 0.00076 2.6E-08 70.9 5.7 55 183-242 134-189 (308)
230 1r6b_X CLPA protein; AAA+, N-t 96.8 0.0021 7.2E-08 77.2 9.5 135 177-322 458-607 (758)
231 2r44_A Uncharacterized protein 96.8 0.0024 8.1E-08 68.2 8.8 150 178-354 28-199 (331)
232 3t15_A Ribulose bisphosphate c 96.8 0.0049 1.7E-07 64.3 10.8 25 203-227 35-59 (293)
233 4b4t_M 26S protease regulatory 96.8 0.0043 1.5E-07 67.7 10.3 177 177-379 181-386 (434)
234 2cvh_A DNA repair and recombin 96.7 0.0057 2E-07 60.7 10.3 86 203-294 19-116 (220)
235 1qvr_A CLPB protein; coiled co 96.7 0.0045 1.5E-07 75.1 10.9 137 178-322 559-710 (854)
236 4b4t_I 26S protease regulatory 96.7 0.013 4.4E-07 63.1 12.9 176 178-379 183-387 (437)
237 2r62_A Cell division protease 96.6 0.00069 2.4E-08 70.0 2.7 51 177-227 11-67 (268)
238 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.0011 3.8E-08 68.5 3.8 68 204-293 123-192 (331)
239 3m6a_A ATP-dependent protease 96.6 0.0053 1.8E-07 70.0 9.7 165 177-353 81-266 (543)
240 3cf2_A TER ATPase, transitiona 96.5 0.013 4.3E-07 69.1 12.5 178 178-380 205-407 (806)
241 1jr3_D DNA polymerase III, del 96.4 0.059 2E-06 57.5 16.3 158 203-386 17-184 (343)
242 2b8t_A Thymidine kinase; deoxy 96.3 0.004 1.4E-07 61.5 5.5 112 203-322 11-125 (223)
243 1um8_A ATP-dependent CLP prote 96.2 0.075 2.6E-06 57.6 16.2 23 204-226 72-94 (376)
244 2x8a_A Nuclear valosin-contain 96.2 0.04 1.4E-06 56.6 13.1 126 207-353 47-191 (274)
245 1ye8_A Protein THEP1, hypothet 96.1 0.034 1.2E-06 52.8 11.2 66 280-347 96-170 (178)
246 1ixz_A ATP-dependent metallopr 96.1 0.056 1.9E-06 54.9 13.3 51 177-227 16-72 (254)
247 1ypw_A Transitional endoplasmi 96.0 0.012 4E-07 70.5 8.8 157 177-353 204-385 (806)
248 2w0m_A SSO2452; RECA, SSPF, un 95.9 0.027 9.3E-07 56.3 9.7 115 204-323 23-168 (235)
249 1g8p_A Magnesium-chelatase 38 95.8 0.018 6E-07 61.9 8.5 45 177-227 24-68 (350)
250 3hr8_A Protein RECA; alpha and 95.8 0.024 8.1E-07 60.2 9.2 84 203-293 60-149 (356)
251 3lw7_A Adenylate kinase relate 95.8 0.12 4E-06 48.8 13.5 20 205-224 2-21 (179)
252 4h09_A Hypothetical leucine ri 95.8 0.13 4.6E-06 55.6 15.5 80 527-619 42-122 (379)
253 2pze_A Cystic fibrosis transme 95.8 0.11 3.9E-06 51.5 13.6 55 274-328 139-195 (229)
254 2dhr_A FTSH; AAA+ protein, hex 95.7 0.048 1.7E-06 60.8 11.8 175 177-380 31-236 (499)
255 2cbz_A Multidrug resistance-as 95.6 0.064 2.2E-06 53.7 11.2 53 275-327 137-193 (237)
256 1g5t_A COB(I)alamin adenosyltr 95.5 0.017 5.8E-07 55.1 6.0 115 205-323 29-163 (196)
257 1n0w_A DNA repair protein RAD5 95.5 0.028 9.5E-07 56.6 8.1 49 203-251 23-75 (243)
258 1iy2_A ATP-dependent metallopr 95.4 0.061 2.1E-06 55.5 10.3 51 177-227 40-96 (278)
259 1xp8_A RECA protein, recombina 95.3 0.041 1.4E-06 58.8 9.0 84 203-293 73-162 (366)
260 2z43_A DNA repair and recombin 95.3 0.051 1.7E-06 57.5 9.5 57 203-260 106-166 (324)
261 1rz3_A Hypothetical protein rb 95.3 0.019 6.6E-07 56.0 5.8 42 182-226 3-44 (201)
262 1mv5_A LMRA, multidrug resista 95.2 0.12 4.2E-06 51.8 11.7 24 203-226 27-50 (243)
263 1v5w_A DMC1, meiotic recombina 95.2 0.062 2.1E-06 57.2 9.9 56 203-259 121-180 (343)
264 2px0_A Flagellar biosynthesis 95.2 0.04 1.4E-06 57.2 8.0 24 203-226 104-127 (296)
265 2i1q_A DNA repair and recombin 95.1 0.042 1.4E-06 58.1 8.4 57 203-260 97-167 (322)
266 2ff7_A Alpha-hemolysin translo 95.1 0.14 4.9E-06 51.4 11.8 53 275-327 155-208 (247)
267 3io5_A Recombination and repai 95.0 0.061 2.1E-06 55.3 8.6 82 206-294 30-122 (333)
268 4h09_A Hypothetical leucine ri 94.9 0.41 1.4E-05 51.7 15.9 80 552-644 42-123 (379)
269 3tqc_A Pantothenate kinase; bi 94.9 0.056 1.9E-06 56.5 8.4 45 180-226 70-114 (321)
270 1pzn_A RAD51, DNA repair and r 94.9 0.08 2.7E-06 56.4 9.8 90 203-293 130-241 (349)
271 1cr0_A DNA primase/helicase; R 94.9 0.11 3.7E-06 54.1 10.7 25 203-227 34-58 (296)
272 2nq2_C Hypothetical ABC transp 94.8 0.16 5.6E-06 51.2 11.3 123 205-327 32-193 (253)
273 1u94_A RECA protein, recombina 94.8 0.051 1.7E-06 57.9 7.8 83 203-292 62-150 (356)
274 2pjz_A Hypothetical protein ST 94.7 0.19 6.6E-06 50.9 11.6 51 274-326 137-188 (263)
275 2zr9_A Protein RECA, recombina 94.7 0.071 2.4E-06 56.7 8.8 84 203-293 60-149 (349)
276 3c8u_A Fructokinase; YP_612366 94.6 0.023 7.9E-07 55.8 4.4 39 185-227 7-45 (208)
277 2bbs_A Cystic fibrosis transme 94.6 0.3 1E-05 50.3 12.8 54 275-328 169-224 (290)
278 2eyu_A Twitching motility prot 94.6 0.072 2.5E-06 54.1 8.0 114 203-327 24-137 (261)
279 3dm5_A SRP54, signal recogniti 94.5 0.47 1.6E-05 51.7 14.6 24 203-226 99-122 (443)
280 1zp6_A Hypothetical protein AT 94.4 0.026 8.9E-07 54.4 4.0 25 203-227 8-32 (191)
281 2orw_A Thymidine kinase; TMTK, 94.3 0.0071 2.4E-07 58.0 -0.2 22 205-226 4-25 (184)
282 1u0j_A DNA replication protein 94.2 0.16 5.4E-06 51.1 9.4 37 186-226 90-126 (267)
283 3ice_A Transcription terminati 94.2 0.051 1.7E-06 57.4 5.9 54 187-246 162-216 (422)
284 1qhx_A CPT, protein (chloramph 94.2 0.021 7.1E-07 54.4 2.8 22 205-226 4-25 (178)
285 1odf_A YGR205W, hypothetical 3 94.1 0.038 1.3E-06 57.1 4.6 26 202-227 29-54 (290)
286 3tui_C Methionine import ATP-b 94.0 0.21 7.2E-06 52.9 10.3 56 273-328 171-229 (366)
287 3kb2_A SPBC2 prophage-derived 94.0 0.026 8.7E-07 53.4 3.0 22 205-226 2-23 (173)
288 1ly1_A Polynucleotide kinase; 93.9 0.03 1E-06 53.4 3.3 22 205-226 3-24 (181)
289 1gvn_B Zeta; postsegregational 93.9 0.052 1.8E-06 56.2 5.3 40 186-226 16-55 (287)
290 3nh6_A ATP-binding cassette SU 93.9 0.18 6.1E-06 52.3 9.3 24 203-226 79-102 (306)
291 3vaa_A Shikimate kinase, SK; s 93.9 0.028 9.5E-07 54.7 3.0 23 204-226 25-47 (199)
292 3bh0_A DNAB-like replicative h 93.8 0.42 1.4E-05 50.1 12.3 53 203-259 67-119 (315)
293 1kgd_A CASK, peripheral plasma 93.8 0.027 9.2E-07 53.8 2.8 23 204-226 5-27 (180)
294 3nbx_X ATPase RAVA; AAA+ ATPas 93.8 0.039 1.3E-06 61.6 4.4 42 178-227 23-64 (500)
295 3uie_A Adenylyl-sulfate kinase 93.7 0.038 1.3E-06 53.8 3.7 25 203-227 24-48 (200)
296 1sky_E F1-ATPase, F1-ATP synth 93.7 0.1 3.4E-06 57.1 7.2 87 205-292 152-254 (473)
297 3lda_A DNA repair protein RAD5 93.6 0.18 6.3E-06 54.4 9.2 57 203-260 177-237 (400)
298 3hws_A ATP-dependent CLP prote 93.6 0.047 1.6E-06 58.9 4.6 50 178-227 16-74 (363)
299 1vma_A Cell division protein F 93.6 0.27 9.2E-06 51.0 10.1 88 203-293 103-196 (306)
300 1kag_A SKI, shikimate kinase I 93.6 0.027 9.3E-07 53.3 2.4 22 205-226 5-26 (173)
301 1knq_A Gluconate kinase; ALFA/ 93.6 0.045 1.5E-06 51.9 3.9 24 203-226 7-30 (175)
302 2ffh_A Protein (FFH); SRP54, s 93.5 0.26 8.7E-06 53.6 10.2 24 203-226 97-120 (425)
303 2rhm_A Putative kinase; P-loop 93.5 0.044 1.5E-06 52.8 3.8 24 203-226 4-27 (193)
304 1z47_A CYSA, putative ABC-tran 93.5 0.42 1.5E-05 50.5 11.5 56 274-329 154-212 (355)
305 3trf_A Shikimate kinase, SK; a 93.5 0.033 1.1E-06 53.4 2.8 23 204-226 5-27 (185)
306 2xxa_A Signal recognition part 93.5 0.49 1.7E-05 51.8 12.4 41 186-226 79-122 (433)
307 2p5t_B PEZT; postsegregational 93.5 0.056 1.9E-06 54.8 4.6 41 185-226 14-54 (253)
308 2ga8_A Hypothetical 39.9 kDa p 93.4 0.072 2.4E-06 56.0 5.4 45 180-226 2-46 (359)
309 3d31_A Sulfate/molybdate ABC t 93.4 0.48 1.6E-05 50.0 11.8 56 274-329 136-194 (348)
310 4gp7_A Metallophosphoesterase; 93.4 0.04 1.4E-06 52.1 3.1 24 203-226 8-31 (171)
311 3jvv_A Twitching mobility prot 93.4 0.04 1.4E-06 58.7 3.4 113 204-327 123-235 (356)
312 1nks_A Adenylate kinase; therm 93.4 0.042 1.4E-06 53.0 3.4 22 205-226 2-23 (194)
313 2ck3_D ATP synthase subunit be 93.3 0.46 1.6E-05 51.8 11.6 65 188-258 142-207 (482)
314 2r8r_A Sensor protein; KDPD, P 93.3 0.024 8E-07 55.5 1.4 105 205-323 7-127 (228)
315 4eun_A Thermoresistant glucoki 93.3 0.039 1.3E-06 53.7 3.0 24 203-226 28-51 (200)
316 1ex7_A Guanylate kinase; subst 93.3 0.029 9.9E-07 53.5 2.0 22 205-226 2-23 (186)
317 3asz_A Uridine kinase; cytidin 93.3 0.05 1.7E-06 53.4 3.8 24 203-226 5-28 (211)
318 2bdt_A BH3686; alpha-beta prot 93.3 0.045 1.5E-06 52.6 3.4 22 205-226 3-24 (189)
319 2qt1_A Nicotinamide riboside k 93.3 0.055 1.9E-06 53.0 4.0 25 203-227 20-44 (207)
320 1uf9_A TT1252 protein; P-loop, 93.3 0.05 1.7E-06 52.9 3.8 25 202-226 6-30 (203)
321 3tau_A Guanylate kinase, GMP k 93.2 0.043 1.5E-06 53.8 3.2 25 203-227 7-31 (208)
322 3tr0_A Guanylate kinase, GMP k 93.2 0.046 1.6E-06 53.4 3.4 23 204-226 7-29 (205)
323 2pt7_A CAG-ALFA; ATPase, prote 93.2 0.15 5.1E-06 53.8 7.4 106 205-325 172-277 (330)
324 3a00_A Guanylate kinase, GMP k 93.1 0.035 1.2E-06 53.3 2.3 22 205-226 2-23 (186)
325 1fx0_B ATP synthase beta chain 93.1 0.24 8.1E-06 54.3 9.0 99 188-292 154-275 (498)
326 1zuh_A Shikimate kinase; alpha 93.0 0.042 1.4E-06 51.6 2.7 24 203-226 6-29 (168)
327 3t61_A Gluconokinase; PSI-biol 93.0 0.037 1.3E-06 53.9 2.4 23 204-226 18-40 (202)
328 1ukz_A Uridylate kinase; trans 93.0 0.06 2E-06 52.5 3.8 25 202-226 13-37 (203)
329 3l0o_A Transcription terminati 93.0 0.31 1.1E-05 51.4 9.2 39 184-227 160-198 (427)
330 2if2_A Dephospho-COA kinase; a 93.0 0.049 1.7E-06 53.2 3.2 22 205-226 2-23 (204)
331 1kht_A Adenylate kinase; phosp 92.9 0.047 1.6E-06 52.6 3.0 22 205-226 4-25 (192)
332 1y63_A LMAJ004144AAA protein; 92.9 0.051 1.7E-06 52.0 3.2 24 203-226 9-32 (184)
333 2ze6_A Isopentenyl transferase 92.9 0.05 1.7E-06 55.1 3.2 22 205-226 2-23 (253)
334 1jjv_A Dephospho-COA kinase; P 92.9 0.055 1.9E-06 52.9 3.4 22 205-226 3-24 (206)
335 3upu_A ATP-dependent DNA helic 92.9 0.17 5.8E-06 56.3 7.9 22 206-227 47-68 (459)
336 3kl4_A SRP54, signal recogniti 92.9 0.69 2.4E-05 50.3 12.3 24 203-226 96-119 (433)
337 2qor_A Guanylate kinase; phosp 92.9 0.043 1.5E-06 53.6 2.6 25 203-227 11-35 (204)
338 1pgv_A TMD-1, tropomodulin TMD 92.8 0.098 3.4E-06 50.1 5.0 112 530-644 40-167 (197)
339 1ls1_A Signal recognition part 92.8 0.28 9.7E-06 50.7 8.9 87 203-292 97-189 (295)
340 3iij_A Coilin-interacting nucl 92.8 0.045 1.5E-06 52.2 2.6 24 203-226 10-33 (180)
341 2j41_A Guanylate kinase; GMP, 92.8 0.053 1.8E-06 53.0 3.2 24 204-227 6-29 (207)
342 2yhs_A FTSY, cell division pro 92.8 0.26 9E-06 54.2 8.9 42 203-247 292-333 (503)
343 3tlx_A Adenylate kinase 2; str 92.8 0.084 2.9E-06 53.1 4.7 24 203-226 28-51 (243)
344 2c95_A Adenylate kinase 1; tra 92.8 0.057 1.9E-06 52.2 3.3 24 203-226 8-31 (196)
345 1uj2_A Uridine-cytidine kinase 92.8 0.058 2E-06 54.7 3.5 25 202-226 20-44 (252)
346 1tev_A UMP-CMP kinase; ploop, 92.8 0.058 2E-06 52.1 3.3 23 204-226 3-25 (196)
347 2ewv_A Twitching motility prot 92.7 0.21 7.1E-06 53.7 7.9 110 203-326 135-247 (372)
348 2jaq_A Deoxyguanosine kinase; 92.7 0.053 1.8E-06 52.8 3.0 21 206-226 2-22 (205)
349 1xjc_A MOBB protein homolog; s 92.6 0.057 1.9E-06 50.4 2.9 24 203-226 3-26 (169)
350 3b5x_A Lipid A export ATP-bind 92.6 0.83 2.8E-05 52.4 13.4 25 203-227 368-392 (582)
351 2yvu_A Probable adenylyl-sulfa 92.6 0.074 2.5E-06 51.0 3.9 25 203-227 12-36 (186)
352 1lvg_A Guanylate kinase, GMP k 92.6 0.046 1.6E-06 53.0 2.4 22 205-226 5-26 (198)
353 1cke_A CK, MSSA, protein (cyti 92.6 0.055 1.9E-06 53.8 3.0 22 205-226 6-27 (227)
354 3fwy_A Light-independent proto 92.6 0.066 2.3E-06 56.0 3.7 25 202-226 46-70 (314)
355 1htw_A HI0065; nucleotide-bind 92.5 0.071 2.4E-06 49.4 3.4 24 203-226 32-55 (158)
356 3aez_A Pantothenate kinase; tr 92.5 0.07 2.4E-06 55.8 3.8 24 203-226 89-112 (312)
357 3umf_A Adenylate kinase; rossm 92.5 0.07 2.4E-06 52.3 3.5 25 202-226 27-51 (217)
358 1via_A Shikimate kinase; struc 92.5 0.055 1.9E-06 51.3 2.7 21 206-226 6-26 (175)
359 1qf9_A UMP/CMP kinase, protein 92.5 0.084 2.9E-06 50.8 4.1 24 203-226 5-28 (194)
360 3cm0_A Adenylate kinase; ATP-b 92.5 0.065 2.2E-06 51.3 3.2 22 205-226 5-26 (186)
361 3a4m_A L-seryl-tRNA(SEC) kinas 92.4 0.068 2.3E-06 54.4 3.5 23 204-226 4-26 (260)
362 2jeo_A Uridine-cytidine kinase 92.4 0.077 2.6E-06 53.5 3.8 24 203-226 24-47 (245)
363 2iyv_A Shikimate kinase, SK; t 92.4 0.045 1.6E-06 52.3 2.0 21 206-226 4-24 (184)
364 3ney_A 55 kDa erythrocyte memb 92.4 0.065 2.2E-06 51.5 3.0 24 203-226 18-41 (197)
365 2bbw_A Adenylate kinase 4, AK4 92.4 0.065 2.2E-06 54.1 3.2 23 204-226 27-49 (246)
366 2bwj_A Adenylate kinase 5; pho 92.3 0.065 2.2E-06 51.9 3.1 23 204-226 12-34 (199)
367 2cdn_A Adenylate kinase; phosp 92.3 0.072 2.5E-06 51.8 3.4 24 203-226 19-42 (201)
368 3e70_C DPA, signal recognition 92.3 0.49 1.7E-05 49.6 9.9 25 203-227 128-152 (328)
369 2hf9_A Probable hydrogenase ni 92.2 0.12 4.3E-06 51.1 5.1 25 203-227 37-61 (226)
370 2grj_A Dephospho-COA kinase; T 92.2 0.075 2.6E-06 51.1 3.2 24 203-226 11-34 (192)
371 1znw_A Guanylate kinase, GMP k 92.2 0.071 2.4E-06 52.1 3.2 24 203-226 19-42 (207)
372 1e6c_A Shikimate kinase; phosp 92.2 0.053 1.8E-06 51.2 2.2 22 205-226 3-24 (173)
373 2plr_A DTMP kinase, probable t 92.1 0.08 2.7E-06 51.9 3.5 24 204-227 4-27 (213)
374 2pt5_A Shikimate kinase, SK; a 92.1 0.071 2.4E-06 50.0 2.9 21 206-226 2-22 (168)
375 2wsm_A Hydrogenase expression/ 92.1 0.12 4E-06 51.1 4.6 39 183-227 15-53 (221)
376 4a1f_A DNAB helicase, replicat 92.0 0.26 8.9E-06 51.8 7.4 54 203-260 45-98 (338)
377 4akg_A Glutathione S-transfera 92.0 0.86 2.9E-05 61.0 13.7 222 207-478 1270-1530(2695)
378 2pcj_A ABC transporter, lipopr 91.9 0.12 4.2E-06 51.0 4.6 22 205-226 31-52 (224)
379 3tif_A Uncharacterized ABC tra 91.9 0.12 4E-06 51.6 4.5 23 204-226 31-53 (235)
380 2f6r_A COA synthase, bifunctio 91.9 0.1 3.5E-06 53.8 4.0 24 203-226 74-97 (281)
381 2onk_A Molybdate/tungstate ABC 91.9 0.12 4.2E-06 51.6 4.5 23 205-227 25-47 (240)
382 4a74_A DNA repair and recombin 91.9 0.22 7.5E-06 49.4 6.5 45 203-247 24-72 (231)
383 2pez_A Bifunctional 3'-phospho 91.8 0.094 3.2E-06 49.8 3.5 24 203-226 4-27 (179)
384 2pbr_A DTMP kinase, thymidylat 91.8 0.078 2.7E-06 51.1 3.0 21 206-226 2-22 (195)
385 4e22_A Cytidylate kinase; P-lo 91.8 0.08 2.7E-06 53.6 3.2 23 204-226 27-49 (252)
386 2vli_A Antibiotic resistance p 91.8 0.054 1.8E-06 51.7 1.7 23 204-226 5-27 (183)
387 1rj9_A FTSY, signal recognitio 91.8 0.089 3E-06 54.7 3.5 24 203-226 101-124 (304)
388 1nn5_A Similar to deoxythymidy 91.8 0.089 3E-06 51.7 3.4 23 204-226 9-31 (215)
389 1z6g_A Guanylate kinase; struc 91.7 0.073 2.5E-06 52.5 2.7 23 204-226 23-45 (218)
390 1sq5_A Pantothenate kinase; P- 91.7 0.19 6.5E-06 52.5 6.0 24 203-226 79-102 (308)
391 1j8m_F SRP54, signal recogniti 91.7 0.54 1.8E-05 48.6 9.3 89 204-294 98-191 (297)
392 2j37_W Signal recognition part 91.7 1 3.4E-05 50.2 12.0 25 202-226 99-123 (504)
393 3gfo_A Cobalt import ATP-bindi 91.7 0.13 4.3E-06 52.6 4.5 22 205-226 35-56 (275)
394 1aky_A Adenylate kinase; ATP:A 91.7 0.084 2.9E-06 52.2 3.1 23 204-226 4-26 (220)
395 1tue_A Replication protein E1; 91.7 0.12 4E-06 49.6 3.8 38 185-227 44-81 (212)
396 2wwf_A Thymidilate kinase, put 91.6 0.09 3.1E-06 51.5 3.2 25 203-227 9-33 (212)
397 1s96_A Guanylate kinase, GMP k 91.6 0.091 3.1E-06 51.7 3.2 25 203-227 15-39 (219)
398 2z0h_A DTMP kinase, thymidylat 91.6 0.21 7.2E-06 48.1 5.9 21 206-226 2-22 (197)
399 3zvl_A Bifunctional polynucleo 91.6 0.4 1.4E-05 52.4 8.6 26 202-227 256-281 (416)
400 1zd8_A GTP:AMP phosphotransfer 91.5 0.089 3.1E-06 52.3 3.1 24 203-226 6-29 (227)
401 1b0u_A Histidine permease; ABC 91.5 0.14 4.7E-06 52.1 4.5 25 203-227 31-55 (262)
402 1vht_A Dephospho-COA kinase; s 91.3 0.12 4E-06 51.0 3.6 23 204-226 4-26 (218)
403 2i3b_A HCR-ntpase, human cance 91.3 0.087 3E-06 50.5 2.6 22 206-227 3-24 (189)
404 1gtv_A TMK, thymidylate kinase 91.2 0.06 2.1E-06 52.9 1.4 22 206-227 2-23 (214)
405 3fb4_A Adenylate kinase; psych 91.1 0.1 3.5E-06 51.4 3.0 21 206-226 2-22 (216)
406 1sgw_A Putative ABC transporte 91.1 0.14 4.7E-06 50.1 3.9 23 205-227 36-58 (214)
407 4g1u_C Hemin import ATP-bindin 91.1 0.16 5.4E-06 51.7 4.4 23 204-226 37-59 (266)
408 3cf2_A TER ATPase, transitiona 91.1 1.1 3.7E-05 52.8 12.0 51 177-227 477-534 (806)
409 1zak_A Adenylate kinase; ATP:A 91.1 0.096 3.3E-06 51.8 2.8 24 203-226 4-27 (222)
410 2olj_A Amino acid ABC transpor 91.1 0.16 5.5E-06 51.5 4.5 25 203-227 49-73 (263)
411 3e1s_A Exodeoxyribonuclease V, 91.1 0.28 9.5E-06 56.0 7.0 23 205-227 205-227 (574)
412 2f1r_A Molybdopterin-guanine d 91.1 0.078 2.7E-06 49.8 2.0 23 205-227 3-25 (171)
413 1m7g_A Adenylylsulfate kinase; 91.1 0.12 4.2E-06 50.5 3.5 25 203-227 24-48 (211)
414 2v54_A DTMP kinase, thymidylat 91.1 0.11 3.8E-06 50.5 3.2 24 204-227 4-27 (204)
415 1ji0_A ABC transporter; ATP bi 91.1 0.16 5.6E-06 50.7 4.5 23 205-227 33-55 (240)
416 2og2_A Putative signal recogni 91.0 0.22 7.6E-06 52.8 5.6 25 203-227 156-180 (359)
417 3b9q_A Chloroplast SRP recepto 91.0 0.13 4.4E-06 53.5 3.7 25 203-227 99-123 (302)
418 1vpl_A ABC transporter, ATP-bi 91.0 0.17 5.7E-06 51.1 4.5 24 204-227 41-64 (256)
419 3dl0_A Adenylate kinase; phosp 91.0 0.11 3.7E-06 51.2 3.0 21 206-226 2-22 (216)
420 2ehv_A Hypothetical protein PH 91.0 0.11 3.8E-06 52.4 3.2 24 203-226 29-52 (251)
421 3p32_A Probable GTPase RV1496/ 91.0 0.22 7.6E-06 53.2 5.7 37 186-226 65-101 (355)
422 1g6h_A High-affinity branched- 90.9 0.17 5.8E-06 51.3 4.5 24 204-227 33-56 (257)
423 3vr4_D V-type sodium ATPase su 90.9 0.36 1.2E-05 52.3 7.1 86 205-292 152-257 (465)
424 3hjn_A DTMP kinase, thymidylat 90.9 0.32 1.1E-05 46.9 6.2 35 206-242 2-36 (197)
425 2ixe_A Antigen peptide transpo 90.8 0.18 6.1E-06 51.5 4.5 53 275-327 166-221 (271)
426 3lnc_A Guanylate kinase, GMP k 90.7 0.078 2.7E-06 52.9 1.7 23 204-226 27-50 (231)
427 3nwj_A ATSK2; P loop, shikimat 90.7 0.091 3.1E-06 52.8 2.2 22 205-226 49-70 (250)
428 3qf4_A ABC transporter, ATP-bi 90.7 0.64 2.2E-05 53.3 9.6 23 204-226 369-391 (587)
429 3d3q_A TRNA delta(2)-isopenten 90.7 0.12 4.3E-06 54.0 3.2 22 205-226 8-29 (340)
430 3rfe_A Platelet glycoprotein I 90.7 0.34 1.2E-05 43.0 5.7 34 587-621 32-66 (130)
431 3thx_A DNA mismatch repair pro 90.6 0.6 2E-05 56.2 9.4 22 203-224 661-682 (934)
432 3ake_A Cytidylate kinase; CMP 90.6 0.12 4.2E-06 50.3 3.0 21 206-226 4-24 (208)
433 2ged_A SR-beta, signal recogni 90.6 0.2 6.8E-06 48.0 4.5 25 203-227 47-71 (193)
434 3rfe_A Platelet glycoprotein I 90.6 0.32 1.1E-05 43.2 5.4 53 589-645 11-66 (130)
435 2yz2_A Putative ABC transporte 90.5 0.19 6.6E-06 51.1 4.5 24 204-227 33-56 (266)
436 3bk7_A ABC transporter ATP-bin 90.5 1.8 6.1E-05 49.6 13.0 125 205-329 383-538 (607)
437 4aby_A DNA repair protein RECN 90.5 0.8 2.7E-05 50.1 9.8 53 276-328 306-361 (415)
438 3bgw_A DNAB-like replicative h 90.4 1.4 4.7E-05 48.5 11.5 52 203-258 196-247 (444)
439 1g41_A Heat shock protein HSLU 90.4 0.2 7E-06 54.5 4.8 50 177-226 15-72 (444)
440 3j16_B RLI1P; ribosome recycli 90.4 1.3 4.6E-05 50.6 11.7 125 205-329 379-534 (608)
441 1np6_A Molybdopterin-guanine d 90.4 0.13 4.6E-06 48.4 2.9 25 203-227 5-29 (174)
442 3b85_A Phosphate starvation-in 90.4 0.1 3.5E-06 50.9 2.1 23 205-227 23-45 (208)
443 3r20_A Cytidylate kinase; stru 90.3 0.14 4.7E-06 50.8 3.0 23 204-226 9-31 (233)
444 3be4_A Adenylate kinase; malar 90.2 0.12 4.2E-06 50.8 2.6 22 205-226 6-27 (217)
445 2ihy_A ABC transporter, ATP-bi 90.2 0.21 7.2E-06 51.1 4.5 24 204-227 47-70 (279)
446 3gqb_B V-type ATP synthase bet 90.2 0.26 8.9E-06 53.3 5.3 88 205-292 148-260 (464)
447 3a8t_A Adenylate isopentenyltr 90.2 0.18 6.2E-06 52.6 3.9 25 203-227 39-63 (339)
448 1yrb_A ATP(GTP)binding protein 90.1 0.19 6.7E-06 51.0 4.2 25 202-226 12-36 (262)
449 1e4v_A Adenylate kinase; trans 90.1 0.15 5.2E-06 50.0 3.2 21 206-226 2-22 (214)
450 3j16_B RLI1P; ribosome recycli 90.0 2 6.9E-05 49.1 12.8 24 203-226 102-125 (608)
451 2d2e_A SUFC protein; ABC-ATPas 90.0 0.16 5.3E-06 51.3 3.2 22 205-226 30-51 (250)
452 3b60_A Lipid A export ATP-bind 89.9 0.99 3.4E-05 51.8 10.3 24 204-227 369-392 (582)
453 2j9r_A Thymidine kinase; TK1, 89.8 0.37 1.3E-05 46.6 5.5 110 203-323 27-138 (214)
454 3crm_A TRNA delta(2)-isopenten 89.8 0.16 5.5E-06 52.8 3.2 23 204-226 5-27 (323)
455 1oix_A RAS-related protein RAB 89.8 0.17 5.7E-06 48.6 3.2 24 204-227 29-52 (191)
456 2zu0_C Probable ATP-dependent 89.8 0.16 5.5E-06 51.7 3.2 24 204-227 46-69 (267)
457 2xb4_A Adenylate kinase; ATP-b 89.8 0.16 5.3E-06 50.3 3.0 21 206-226 2-22 (223)
458 3exa_A TRNA delta(2)-isopenten 89.8 0.18 6.2E-06 51.9 3.5 23 204-226 3-25 (322)
459 3sr0_A Adenylate kinase; phosp 89.7 0.16 5.6E-06 49.3 3.0 88 206-308 2-98 (206)
460 1pgv_A TMD-1, tropomodulin TMD 89.7 0.33 1.1E-05 46.4 5.1 92 549-644 34-136 (197)
461 2c61_A A-type ATP synthase non 89.7 0.38 1.3E-05 52.4 6.1 100 188-292 141-258 (469)
462 2qi9_C Vitamin B12 import ATP- 89.7 0.16 5.6E-06 51.0 3.1 23 205-227 27-49 (249)
463 2vp4_A Deoxynucleoside kinase; 89.7 0.19 6.4E-06 50.0 3.5 25 202-226 18-42 (230)
464 3cmu_A Protein RECA, recombina 89.6 0.58 2E-05 60.3 8.6 83 203-292 1426-1514(2050)
465 3llm_A ATP-dependent RNA helic 89.6 0.99 3.4E-05 44.8 8.8 89 205-294 77-187 (235)
466 2ghi_A Transport protein; mult 89.5 0.17 5.8E-06 51.3 3.1 24 204-227 46-69 (260)
467 3foz_A TRNA delta(2)-isopenten 89.5 0.22 7.4E-06 51.2 3.8 24 203-226 9-32 (316)
468 3vkw_A Replicase large subunit 89.5 0.79 2.7E-05 49.7 8.4 26 201-226 158-183 (446)
469 1ak2_A Adenylate kinase isoenz 89.4 0.18 6.2E-06 50.2 3.2 24 203-226 15-38 (233)
470 2qe7_A ATP synthase subunit al 89.4 0.66 2.3E-05 50.8 7.7 96 188-292 151-263 (502)
471 2r9v_A ATP synthase subunit al 89.4 0.83 2.8E-05 50.1 8.5 96 188-292 164-276 (515)
472 3k1j_A LON protease, ATP-depen 89.4 0.21 7.1E-06 57.8 4.0 43 177-227 41-83 (604)
473 1zu4_A FTSY; GTPase, signal re 89.4 0.21 7.1E-06 52.3 3.7 24 203-226 104-127 (320)
474 2wji_A Ferrous iron transport 89.3 0.21 7.3E-06 46.5 3.5 23 205-227 4-26 (165)
475 1a7j_A Phosphoribulokinase; tr 89.3 0.094 3.2E-06 54.2 1.0 24 203-226 4-27 (290)
476 2o8b_B DNA mismatch repair pro 89.3 0.41 1.4E-05 58.4 6.7 21 204-224 789-809 (1022)
477 3qf4_B Uncharacterized ABC tra 89.3 0.79 2.7E-05 52.7 8.9 25 203-227 380-404 (598)
478 2zej_A Dardarin, leucine-rich 89.3 0.17 5.9E-06 48.1 2.8 22 206-227 4-25 (184)
479 2q6t_A DNAB replication FORK h 89.2 1.1 3.8E-05 49.4 9.7 55 203-260 199-253 (444)
480 2yl4_A ATP-binding cassette SU 89.2 1.3 4.6E-05 50.8 10.7 24 204-227 370-393 (595)
481 4eaq_A DTMP kinase, thymidylat 89.2 0.37 1.3E-05 47.7 5.2 25 203-227 25-49 (229)
482 2iw3_A Elongation factor 3A; a 89.1 3 0.0001 50.1 13.7 119 205-328 462-610 (986)
483 1xx6_A Thymidine kinase; NESG, 89.1 0.18 6E-06 48.3 2.6 110 203-323 7-118 (191)
484 1ltq_A Polynucleotide kinase; 89.0 0.2 6.8E-06 52.2 3.2 22 205-226 3-24 (301)
485 2f9l_A RAB11B, member RAS onco 88.8 0.19 6.4E-06 48.6 2.7 24 204-227 5-28 (199)
486 1q3t_A Cytidylate kinase; nucl 88.8 0.21 7.3E-06 49.8 3.2 25 202-226 14-38 (236)
487 2v9p_A Replication protein E1; 88.7 0.21 7.3E-06 51.6 3.2 24 203-226 125-148 (305)
488 1tf7_A KAIC; homohexamer, hexa 88.7 0.29 1E-05 55.4 4.6 25 203-227 280-304 (525)
489 3sop_A Neuronal-specific septi 88.6 0.23 7.9E-06 50.6 3.3 22 206-227 4-25 (270)
490 4a82_A Cystic fibrosis transme 88.6 0.67 2.3E-05 53.1 7.6 24 203-226 366-389 (578)
491 2dyk_A GTP-binding protein; GT 88.6 0.26 8.9E-06 45.4 3.4 23 205-227 2-24 (161)
492 2dr3_A UPF0273 protein PH0284; 88.5 0.33 1.1E-05 48.7 4.4 39 204-244 23-61 (247)
493 3fvq_A Fe(3+) IONS import ATP- 88.4 0.36 1.2E-05 51.0 4.7 24 204-227 30-53 (359)
494 3dzd_A Transcriptional regulat 88.4 0.42 1.4E-05 51.2 5.3 47 177-227 129-175 (368)
495 1nlf_A Regulatory protein REPA 88.4 0.24 8.3E-06 50.9 3.3 23 204-226 30-52 (279)
496 3end_A Light-independent proto 88.3 0.26 9E-06 51.4 3.7 26 201-226 38-63 (307)
497 2v3c_C SRP54, signal recogniti 88.3 0.26 8.9E-06 53.9 3.7 25 203-227 98-122 (432)
498 2qmh_A HPR kinase/phosphorylas 88.3 0.25 8.5E-06 47.1 3.0 24 204-227 34-57 (205)
499 1svm_A Large T antigen; AAA+ f 88.3 0.38 1.3E-05 51.5 4.8 24 203-226 168-191 (377)
500 4edh_A DTMP kinase, thymidylat 88.2 0.68 2.3E-05 45.1 6.3 25 203-227 5-29 (213)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.2e-42 Score=403.31 Aligned_cols=285 Identities=20% Similarity=0.264 Sum_probs=235.0
Q ss_pred ecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhc--CcccccccceEEEEEeCCcc--cHHHHHHHH
Q 039167 180 FGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYN--NGDVEKNFEKRIWVCVSDPF--DEFRIARAI 255 (923)
Q Consensus 180 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i 255 (923)
|||++++++|.++|.... ....++|+|+||||+||||||+++|+ +.+++.+|+.++||++++.. +...++..|
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 599999999999997542 34689999999999999999999998 67899999999999999885 899999999
Q ss_pred HHHHhCCCC-------CCcCHHHHHHHHHHHhcCC-ceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecchHHHH
Q 039167 256 IEALTGCLP-------NFVEFQSLMQHIQKHVAGK-KLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRKEAVAR 327 (923)
Q Consensus 256 ~~~l~~~~~-------~~~~~~~~~~~l~~~l~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 327 (923)
+.+++.... +..+.+.+...+++.|+++ ||||||||||+.+...|. . .+||+||||||++.++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~-------~-~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWA-------Q-ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHH-------H-HTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhccc-------c-cCCCEEEEEcCCHHHHH
Confidence 999986421 2234567788999999996 999999999985321222 1 16999999999999998
Q ss_pred Hhc-ccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHHHHHccCCCHHHHHHHHhhh
Q 039167 328 IMG-STNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTIASLLRSKNTEKEWQNILKSE 406 (923)
Q Consensus 328 ~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~l~~~ 406 (923)
.++ ...+|+|++|+.++||+||.+++|.... ++.+.+++++|+++|+|+||||+++|+.|+.+ + .+|...+.+.
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~---~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~ 354 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMPV---GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNK 354 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHHH
Confidence 776 4468999999999999999999986532 46788899999999999999999999999776 3 2333334433
Q ss_pred hhhhhhhhhhhhhHHHhhcccCChhhHHHHh-----------hhccCCCCcccChHHHHHHHHhc--c-------CCCHH
Q 039167 407 IWEIEQVEKNLLAPLLLSYNELPSKVKQCFT-----------YCAVFPKDVILKKDKLIELWMAQ--E-------TKEME 466 (923)
Q Consensus 407 ~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl-----------~~s~fp~~~~i~~~~Li~~W~ae--~-------~~~~e 466 (923)
.+.. ....+.+++.+||++||+++|.||+ |||+||+++.|+ +++|+|+ + ..+++
T Consensus 355 l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 355 LESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTH
T ss_pred hhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHH
Confidence 3322 2456889999999999999999999 999999999999 8999998 3 24578
Q ss_pred HHHHHHHHHHHhcccccccCC
Q 039167 467 EIGEEYFNVLASRSFFQEFGR 487 (923)
Q Consensus 467 ~~~~~~~~~Lv~r~l~q~~~~ 487 (923)
++++ ||++|++|||+++...
T Consensus 429 ~~~~-~l~~L~~rsLl~~~~~ 448 (549)
T 2a5y_B 429 EVAD-RLKRLSKRGALLSGKR 448 (549)
T ss_dssp HHHH-HHHHTTTBSSCSEEEC
T ss_pred HHHH-HHHHHHHcCCeeEecC
Confidence 8888 9999999999997653
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=6.9e-37 Score=355.69 Aligned_cols=270 Identities=19% Similarity=0.212 Sum_probs=218.5
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccce-EEEEEeCCcccHHHHHHHHH
Q 039167 178 EIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEK-RIWVCVSDPFDEFRIARAII 256 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~~i~ 256 (923)
..|||++++++|.++|... .+.++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..++
T Consensus 129 ~~VGRe~eLeeL~elL~~~-----d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLEL-----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHC-----CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhcc-----CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 3599999999999999753 24789999999999999999999998788999997 89999999999888888888
Q ss_pred HHHhCCC---C---C-----CcCHHHHHHHHHHHh---cCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecc
Q 039167 257 EALTGCL---P---N-----FVEFQSLMQHIQKHV---AGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRK 322 (923)
Q Consensus 257 ~~l~~~~---~---~-----~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~ 322 (923)
+.++... . + ..+.+.+...+++.+ .+||+||||||||+. +.|+.+ + +||+||||||+
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd 274 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSC
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEeccC
Confidence 7654211 1 0 013345566677766 689999999999973 556543 2 58999999999
Q ss_pred hHHHHHhcccceEeCC------CCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHHHHHccCC-C
Q 039167 323 EAVARIMGSTNIISVN------VLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTIASLLRSKN-T 395 (923)
Q Consensus 323 ~~v~~~~~~~~~~~l~------~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~-~ 395 (923)
+.++..+.....|+++ +|+.+|||+||++.. +... .++..+| |+|+||||+++|+.|+.+. +
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~~-------eeL~~eI---CgGLPLALkLaGs~Lr~k~~s 343 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCRP-------QDLPREV---LTTNPRRLSIIAESIRDGLAT 343 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCCT-------TTHHHHH---CCCCHHHHHHHHHHHHHSCSS
T ss_pred hHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCCH-------HHHHHHH---hCCCHHHHHHHHHHHhCCCCC
Confidence 9998765544567777 999999999999883 3221 1223333 9999999999999999885 6
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhHHHhhcccCChhh-HHHHhhhccCCCCcccChHHHHHHHHhccCCCHHHHHHHHHH
Q 039167 396 EKEWQNILKSEIWEIEQVEKNLLAPLLLSYNELPSKV-KQCFTYCAVFPKDVILKKDKLIELWMAQETKEMEEIGEEYFN 474 (923)
Q Consensus 396 ~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~-k~~fl~~s~fp~~~~i~~~~Li~~W~ae~~~~~e~~~~~~~~ 474 (923)
.++|... ....+..+|.+||+.||++. |.||+|||+||+++.|+++.++.+|++++ ++.++.+++
T Consensus 344 ~eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----eedAe~~L~ 409 (1221)
T 1vt4_I 344 WDNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----KSDVMVVVN 409 (1221)
T ss_dssp HHHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----SHHHHHHHH
T ss_pred HHHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----HHHHHHHHH
Confidence 7788653 13568999999999999999 99999999999999999999999998875 345889999
Q ss_pred HHHhcccccccC
Q 039167 475 VLASRSFFQEFG 486 (923)
Q Consensus 475 ~Lv~r~l~q~~~ 486 (923)
+|+++||++..+
T Consensus 410 eLvdRSLLq~d~ 421 (1221)
T 1vt4_I 410 KLHKYSLVEKQP 421 (1221)
T ss_dssp HHHTSSSSSBCS
T ss_pred HHHhhCCEEEeC
Confidence 999999999754
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.8e-34 Score=372.74 Aligned_cols=289 Identities=22% Similarity=0.308 Sum_probs=230.4
Q ss_pred CCCCceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCccc-cccc-ceEEEEEeCCccc--HH
Q 039167 174 IDESEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDV-EKNF-EKRIWVCVSDPFD--EF 249 (923)
Q Consensus 174 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~~s~~~~--~~ 249 (923)
..++.||||++++++|.++|.... .+.++|+|+||||+||||||+++|++.+. ..+| +.++|+++++..+ ..
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 196 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLL 196 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHH
Confidence 445679999999999999997543 37899999999999999999999997543 4445 5677999988543 44
Q ss_pred HHHHHHHHHHhCCC----CCCcCHHHHHHHHHHHhcCC--ceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecch
Q 039167 250 RIARAIIEALTGCL----PNFVEFQSLMQHIQKHVAGK--KLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRKE 323 (923)
Q Consensus 250 ~~~~~i~~~l~~~~----~~~~~~~~~~~~l~~~l~~k--r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 323 (923)
..+..++..+.... ....+.+.+...++..+.++ ||||||||||+. ..|+. .++||+||||||++
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~-------~~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKA-------FDNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTT-------TCSSCEEEEEESST
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHh-------hcCCCEEEEEcCCH
Confidence 55677777776532 22356778888899999877 999999999864 33333 25689999999999
Q ss_pred HHHHH-hcccceEeCCC-CChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHHHHHccCCCHHHHHH
Q 039167 324 AVARI-MGSTNIISVNV-LSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTIASLLRSKNTEKEWQN 401 (923)
Q Consensus 324 ~v~~~-~~~~~~~~l~~-L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~ 401 (923)
.++.. ++....+++++ |++++|++||...++... +.+.+++++|+++|+|+||||+++|++|+.++ ..|..
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~ 340 (1249)
T 3sfz_A 268 SVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAY 340 (1249)
T ss_dssp TTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHH
T ss_pred HHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHH
Confidence 99854 45677899996 999999999999885332 23345689999999999999999999999875 35766
Q ss_pred HHhhhhhhh--------hhhhhhhhhHHHhhcccCChhhHHHHhhhccCCCCcccChHHHHHHHHhccCCCHHHHHHHHH
Q 039167 402 ILKSEIWEI--------EQVEKNLLAPLLLSYNELPSKVKQCFTYCAVFPKDVILKKDKLIELWMAQETKEMEEIGEEYF 473 (923)
Q Consensus 402 ~l~~~~~~~--------~~~~~~~~~~l~~sy~~L~~~~k~~fl~~s~fp~~~~i~~~~Li~~W~ae~~~~~e~~~~~~~ 473 (923)
.++...... ......+.+++.+||+.||+++|.||+|||+||+++.|+++.++.+|.++ ++.++.++
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----~~~~~~~l 415 (1249)
T 3sfz_A 341 YLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----TEEVEDIL 415 (1249)
T ss_dssp HHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----HHHHHHHH
T ss_pred HHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----HHHHHHHH
Confidence 665422111 11125699999999999999999999999999999999999999999765 57789999
Q ss_pred HHHHhcccccccCC
Q 039167 474 NVLASRSFFQEFGR 487 (923)
Q Consensus 474 ~~Lv~r~l~q~~~~ 487 (923)
++|++++|++....
T Consensus 416 ~~L~~~sl~~~~~~ 429 (1249)
T 3sfz_A 416 QEFVNKSLLFCNRN 429 (1249)
T ss_dssp HHHHHTTSCEEEES
T ss_pred HHHHhccceEEecC
Confidence 99999999986543
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.97 E-value=1.8e-31 Score=315.00 Aligned_cols=284 Identities=23% Similarity=0.298 Sum_probs=217.3
Q ss_pred CCCceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCccc-cccc-ceEEEEEeCCcccHHHHH
Q 039167 175 DESEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDV-EKNF-EKRIWVCVSDPFDEFRIA 252 (923)
Q Consensus 175 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~~s~~~~~~~~~ 252 (923)
.++.||||++++++|.++|.... .+.++|+|+||||+||||||++++++.++ ..+| +.++|++++.. +...++
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~ 196 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLL 196 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHH
Confidence 34579999999999999997532 36789999999999999999999997655 7889 57999999875 333333
Q ss_pred HHH---HHHHhCC----CCCCcCHHHHHHHHHHHhcC--CceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecch
Q 039167 253 RAI---IEALTGC----LPNFVEFQSLMQHIQKHVAG--KKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRKE 323 (923)
Q Consensus 253 ~~i---~~~l~~~----~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 323 (923)
..+ +..++.. .....+.+.....+...+.+ +++||||||+|+. . .+. ..+.|++||||||++
T Consensus 197 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~---~l~----~l~~~~~ilvTsR~~ 267 (591)
T 1z6t_A 197 MKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--W---VLK----AFDSQCQILLTTRDK 267 (591)
T ss_dssp HHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--H---HHH----TTCSSCEEEEEESCG
T ss_pred HHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--H---HHH----HhcCCCeEEEECCCc
Confidence 333 3444421 12335667777888888876 7999999999863 2 222 225689999999999
Q ss_pred HHHHHhcccceEeC---CCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHHHHHccCCCHHHHH
Q 039167 324 AVARIMGSTNIISV---NVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTIASLLRSKNTEKEWQ 400 (923)
Q Consensus 324 ~v~~~~~~~~~~~l---~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~ 400 (923)
.++..++ ...+++ ++|+.+++++||...++... +...+.+.+|+++|+|+||||..+|+.++.... .|.
T Consensus 268 ~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~-----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~--~w~ 339 (591)
T 1z6t_A 268 SVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKK-----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFPN--RWE 339 (591)
T ss_dssp GGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG-----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTT--CHH
T ss_pred HHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCc-----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCch--hHH
Confidence 8876543 234444 58999999999999886421 122346889999999999999999999988743 577
Q ss_pred HHHhhhhhhh--------hhhhhhhhhHHHhhcccCChhhHHHHhhhccCCCCcccChHHHHHHHHhccCCCHHHHHHHH
Q 039167 401 NILKSEIWEI--------EQVEKNLLAPLLLSYNELPSKVKQCFTYCAVFPKDVILKKDKLIELWMAQETKEMEEIGEEY 472 (923)
Q Consensus 401 ~~l~~~~~~~--------~~~~~~~~~~l~~sy~~L~~~~k~~fl~~s~fp~~~~i~~~~Li~~W~ae~~~~~e~~~~~~ 472 (923)
..+....... ......+..++..||+.||++.|.||++||+||+|+.|+.+.++.+|.++ .+.+..+
T Consensus 340 ~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----~~~~~~~ 414 (591)
T 1z6t_A 340 YYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-----TEEVEDI 414 (591)
T ss_dssp HHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----HHHHHHH
T ss_pred HHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-----HHHHHHH
Confidence 7665422111 11224688999999999999999999999999999999999999999654 3457889
Q ss_pred HHHHHhccccccc
Q 039167 473 FNVLASRSFFQEF 485 (923)
Q Consensus 473 ~~~Lv~r~l~q~~ 485 (923)
+++|+++++++..
T Consensus 415 l~~L~~~~Ll~~~ 427 (591)
T 1z6t_A 415 LQEFVNKSLLFCD 427 (591)
T ss_dssp HHHHHHTTSSEEE
T ss_pred HHHHHhCcCeEEe
Confidence 9999999999854
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=5e-27 Score=284.95 Aligned_cols=388 Identities=20% Similarity=0.156 Sum_probs=245.8
Q ss_pred cceEEEEEEecCCCCCccccccc-cCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccc-ccccc-cc
Q 039167 507 KKILHLTLAIGCGPMPIYDNIEA-LRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIK-EVPTN-IE 583 (923)
Q Consensus 507 ~~~~~l~l~~~~~~~~~~~~~~~-~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~-~lp~~-i~ 583 (923)
..++.+.+..+......+..+.. +++|+.|++++|.+... .|..|.+++.|++|++++|. +. .+|.. ++
T Consensus 269 ~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~-------l~~~ip~~~l~ 340 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA-VPPFFGSCSLLESLALSSNN-------FSGELPMDTLL 340 (768)
T ss_dssp TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEEC-CCGGGGGCTTCCEEECCSSE-------EEEECCHHHHT
T ss_pred CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCc-cchHHhcCCCccEEECCCCc-------ccCcCCHHHHh
Confidence 45566666555432122333333 37788888888776543 35557788888888888665 33 66655 77
Q ss_pred CCCCCcEEeccCCCCccccchhhhCCC-CCcEEecCCCccccccCccccC--CCCCCEEeCCCCcccccCCcCCCCCCCC
Q 039167 584 KLLHLKYLNLANQMEIERLPETLCELY-NLEHLNVNCCVKLRELPQGIGR--LRKLMYLDNECTVSLRYLPVGIGKLIRL 660 (923)
Q Consensus 584 ~l~~L~~L~L~~~~~l~~lp~~i~~L~-~L~~L~L~~~~~l~~lp~~i~~--L~~L~~L~l~~~~~l~~~p~~i~~L~~L 660 (923)
++++|++|++++|.....+|..+.++. +|++|++++|.....+|..+.. +++|++|++++|.....+|..++++++|
T Consensus 341 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L 420 (768)
T 3rgz_A 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 420 (768)
T ss_dssp TCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTC
T ss_pred cCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCC
Confidence 888888888888873337787787776 7888888888754566776666 7788888888886555778888888888
Q ss_pred CcCCceEecccCCcccccccccCCCCCCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhh
Q 039167 661 RRVKEFVVGGGYGRACSLGSLKKLNLLRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLE 740 (923)
Q Consensus 661 ~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 740 (923)
++|++..+......+. .+..+++|+.+.+....-. ...+..+..+++|+.|+++.|.+.. ..+.
T Consensus 421 ~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~L~~n~l~----~~~p~~~~~l~~L~~L~L~~N~l~~---------~~p~ 484 (768)
T 3rgz_A 421 VSLHLSFNYLSGTIPS---SLGSLSKLRDLKLWLNMLE----GEIPQELMYVKTLETLILDFNDLTG---------EIPS 484 (768)
T ss_dssp CEEECCSSEEESCCCG---GGGGCTTCCEEECCSSCCC----SCCCGGGGGCTTCCEEECCSSCCCS---------CCCG
T ss_pred CEEECcCCcccCcccH---HHhcCCCCCEEECCCCccc----CcCCHHHcCCCCceEEEecCCcccC---------cCCH
Confidence 8887776654432232 3444555666555543221 1122446677888888888887543 2344
Q ss_pred cCCCCCCCCcEEEeeecCCCCCcCcccccccccccEEeEeCCCCCCCCCC-CCCCCCccceeccCCcCceEeCccccCCC
Q 039167 741 ALGPPPNLKELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRNCEHLPP-LGKLPSLESLYIAGMKSVKRVGNEFLGVE 819 (923)
Q Consensus 741 ~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~~l~~~~~~~~~~~ 819 (923)
.+..+++|+.|++++|.... ..|.|+..+++|+.|+|++|.....+|. ++.+++|+.|++++|.-...+|..+....
T Consensus 485 ~l~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~ 562 (768)
T 3rgz_A 485 GLSNCTNLNWISLSNNRLTG--EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCS--CCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTT
T ss_pred HHhcCCCCCEEEccCCccCC--cCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhccc
Confidence 56677889999998888764 3378888888999999998877666665 78888899999988873334443322110
Q ss_pred CC-------------------------------------------------------CCCc---ccccCcccceeecccc
Q 039167 820 SD-------------------------------------------------------MDGS---SVIAFAKLKKLTFYIM 841 (923)
Q Consensus 820 ~~-------------------------------------------------------~~~~---~~~~f~~L~~L~l~~~ 841 (923)
.. +.+. ....+++|+.|++.++
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N 642 (768)
T 3rgz_A 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642 (768)
T ss_dssp TCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS
T ss_pred chhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC
Confidence 00 0000 0111233344433322
Q ss_pred ------------------ccccccccccccccccccCcccceeeecccccCCCCCcCCCCCCCccEEEeccCC-------
Q 039167 842 ------------------EELEEWDLGTAIKGEIIIMPRLSSLTIWSCRKLKALPDHLLQKSTLQKLEIWGGC------- 896 (923)
Q Consensus 842 ------------------~~L~~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~~c------- 896 (923)
-+|+.+.+.+.+|..++.+++|+.|++++|.....+|..+.++++|++|++ ++|
T Consensus 643 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l-s~N~l~g~iP 721 (768)
T 3rgz_A 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL-SNNNLSGPIP 721 (768)
T ss_dssp CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC-CSSEEEEECC
T ss_pred cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC-cCCcccccCC
Confidence 034455566778888889999999999999777788999999999999999 443
Q ss_pred ----------------chh----hhhhccCCCCCCCcccCCCCcc
Q 039167 897 ----------------HIL----QERYREETGEDWPNIRHIPKIS 921 (923)
Q Consensus 897 ----------------~~l----~~~~~~~~~~~~~~i~hip~i~ 921 (923)
|.+ ...|....+++|++++|+|++.
T Consensus 722 ~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 722 EMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp SSSSGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred CchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 211 1258889999999999999874
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=1.3e-24 Score=257.54 Aligned_cols=348 Identities=14% Similarity=0.146 Sum_probs=252.9
Q ss_pred ccceEEEEEEecCCCCC-----------------cccccc--ccCCceEEEeCCCCCCCccchHHhhcCCcccEEecccc
Q 039167 506 EKKILHLTLAIGCGPMP-----------------IYDNIE--ALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVH 566 (923)
Q Consensus 506 ~~~~~~l~l~~~~~~~~-----------------~~~~~~--~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~ 566 (923)
...++.+.+..+..... .+..+. .+++|++|++++|.+... +|..+.++++|++|++++|
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK-LPTFLKALPEMQLINVACN 283 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS-CCTTTTTCSSCCEEECTTC
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc-ChHHHhcCCCCCEEECcCC
Confidence 45677888877765332 566666 888899999988876553 4566888889999999866
Q ss_pred CCcccccccc--cccccccCC------CCCcEEeccCCCCccccch--hhhCCCCCcEEecCCCcccc-ccCccccCCCC
Q 039167 567 NERLPEDFIK--EVPTNIEKL------LHLKYLNLANQMEIERLPE--TLCELYNLEHLNVNCCVKLR-ELPQGIGRLRK 635 (923)
Q Consensus 567 ~~~~~~~~~~--~lp~~i~~l------~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~L~~~~~l~-~lp~~i~~L~~ 635 (923)
. .+. .+|..++.+ ++|++|++++|. +..+|. .++++++|++|++++|. +. .+| .++.+++
T Consensus 284 ~------~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip-~~~~l~~ 354 (636)
T 4eco_A 284 R------GISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQ-LEGKLP-AFGSEIK 354 (636)
T ss_dssp T------TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCC-CEEECC-CCEEEEE
T ss_pred C------CCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCc-Cccchh-hhCCCCC
Confidence 4 133 477777776 889999999888 778888 88899999999999887 55 888 8888889
Q ss_pred CCEEeCCCCcccccCCcCCCCCCC-CCcCCceEecccCCcccccccccCCCCCCCceEeCCCCCCChhhhHHhhcC----
Q 039167 636 LMYLDNECTVSLRYLPVGIGKLIR-LRRVKEFVVGGGYGRACSLGSLKKLNLLRDCRIRGLGDVSDVDEARRAELE---- 710 (923)
Q Consensus 636 L~~L~l~~~~~l~~~p~~i~~L~~-L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~---- 710 (923)
|++|++++| .+..+|..++.+++ |++|++..+.... .+..+.. ..+.+|+.+.+....-. ...+..+.
T Consensus 355 L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N~l~~-lp~~~~~-~~l~~L~~L~Ls~N~l~----~~~p~~l~~~~~ 427 (636)
T 4eco_A 355 LASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDA-KSVSVMSAIDFSYNEIG----SVDGKNFDPLDP 427 (636)
T ss_dssp ESEEECCSS-EEEECCTTSEEECTTCCEEECCSSCCSS-CCSCCCT-TCSSCEEEEECCSSCTT----TTTTCSSCTTCS
T ss_pred CCEEECCCC-ccccccHhhhhhcccCcEEEccCCcCcc-cchhhhh-cccCccCEEECcCCcCC----Ccchhhhccccc
Confidence 999999888 45688888888888 8888877665442 2222211 11224444555432211 11112233
Q ss_pred ---CCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCccccccc-------ccccEEeEe
Q 039167 711 ---KKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKNWIMSL-------TNLRFLGLH 780 (923)
Q Consensus 711 ---~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l-------~~L~~L~L~ 780 (923)
.+.+|+.|++++|.+...+ ...+..+++|+.|++++|.... +|+.++... ++|+.|+|+
T Consensus 428 ~~~~~~~L~~L~Ls~N~l~~lp---------~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~~~~~~~~~l~~L~~L~Ls 496 (636)
T 4eco_A 428 TPFKGINVSSINLSNNQISKFP---------KELFSTGSPLSSINLMGNMLTE--IPKNSLKDENENFKNTYLLTSIDLR 496 (636)
T ss_dssp SCCCCCCEEEEECCSSCCCSCC---------THHHHTTCCCSEEECCSSCCSB--CCSSSSEETTEECTTGGGCCEEECC
T ss_pred ccccCCCCCEEECcCCccCcCC---------HHHHccCCCCCEEECCCCCCCC--cCHHHhccccccccccCCccEEECc
Confidence 5668889999888754211 0112346889999999998876 755444433 389999999
Q ss_pred CCCCCCCCCC-CC--CCCCccceeccCCcCceEeCccccCCCCCCCCcccccCcccceeecccccccccccccccccccc
Q 039167 781 EWRNCEHLPP-LG--KLPSLESLYIAGMKSVKRVGNEFLGVESDMDGSSVIAFAKLKKLTFYIMEELEEWDLGTAIKGEI 857 (923)
Q Consensus 781 ~~~~~~~l~~-l~--~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~ 857 (923)
+|... .+|. +. .+++|+.|+|++|. +..++..+ ..+++|+.|.+.++..+..+.+.+.+|..+
T Consensus 497 ~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~------------~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l 562 (636)
T 4eco_A 497 FNKLT-KLSDDFRATTLPYLVGIDLSYNS-FSKFPTQP------------LNSSTLKGFGIRNQRDAQGNRTLREWPEGI 562 (636)
T ss_dssp SSCCC-BCCGGGSTTTCTTCCEEECCSSC-CSSCCCGG------------GGCSSCCEEECCSCBCTTCCBCCCCCCTTG
T ss_pred CCcCC-ccChhhhhccCCCcCEEECCCCC-CCCcChhh------------hcCCCCCEEECCCCcccccCcccccChHHH
Confidence 99655 6665 54 89999999999987 44454332 268899999999888778888888889999
Q ss_pred ccCcccceeeecccccCCCCCcCCCCCCCccEEEeccCCchh
Q 039167 858 IIMPRLSSLTIWSCRKLKALPDHLLQKSTLQKLEIWGGCHIL 899 (923)
Q Consensus 858 ~~lp~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~~c~~l 899 (923)
..+++|+.|++++|.. ..+|..+. ++|+.|++ ++||..
T Consensus 563 ~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~L-s~N~l~ 600 (636)
T 4eco_A 563 TLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDI-KDNPNI 600 (636)
T ss_dssp GGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEEC-CSCTTC
T ss_pred hcCCCCCEEECCCCcC-CccCHhHh--CcCCEEEC-cCCCCc
Confidence 9999999999999975 88998765 89999999 888643
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=7.7e-24 Score=254.64 Aligned_cols=332 Identities=14% Similarity=0.170 Sum_probs=238.6
Q ss_pred ccccc--ccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccc--cccccccCCC-------CCcEEe
Q 039167 524 YDNIE--ALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIK--EVPTNIEKLL-------HLKYLN 592 (923)
Q Consensus 524 ~~~~~--~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~--~lp~~i~~l~-------~L~~L~ 592 (923)
+..+. .+++|+.|.+++|.+... +|..|.++++|++|+|++|. .+. .+|..++++. +|++|+
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~-iP~~l~~L~~L~~L~Ls~N~------~lsg~~iP~~i~~L~~~~~~l~~L~~L~ 554 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQ-LPDFLYDLPELQSLNIACNR------GISAAQLKADWTRLADDEDTGPKIQIFY 554 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCS-CCGGGGGCSSCCEEECTTCT------TSCHHHHHHHHHHHHHCTTTTTTCCEEE
T ss_pred ChhhhhccCCCCCEEECcCCCCCcc-ChHHHhCCCCCCEEECcCCC------CcccccchHHHHhhhhcccccCCccEEE
Confidence 44544 888899999988876553 45668888899999998764 133 3666665554 899999
Q ss_pred ccCCCCccccch--hhhCCCCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCcCCCCCCC-CCcCCceEec
Q 039167 593 LANQMEIERLPE--TLCELYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIR-LRRVKEFVVG 669 (923)
Q Consensus 593 L~~~~~l~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~-L~~L~~~~~~ 669 (923)
|++|. +..+|. .++++++|++|+|++|. +..+| .++.+++|++|++++| .+..+|..++.+++ |+.|++..+.
T Consensus 555 Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~Ls~N-~l~~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 555 MGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp CCSSC-CCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEEECCSS-CCSCCCTTSCEECTTCCEEECCSSC
T ss_pred eeCCc-CCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCCcceEEECcCC-ccccchHHHhhccccCCEEECcCCC
Confidence 98888 778888 88889999999998887 66888 7888889999999888 45588888888888 8888877665
Q ss_pred ccCCcccccccccCCCCCCCceEeCCCCCCChhhhHHhhcC--CCCCCCcEEEEEcCCCCCCCccchHHHHhhc-CCCCC
Q 039167 670 GGYGRACSLGSLKKLNLLRDCRIRGLGDVSDVDEARRAELE--KKKNLFELKLHFDQAGRRENEEDEDERLLEA-LGPPP 746 (923)
Q Consensus 670 ~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-l~~~~ 746 (923)
... .+..+..+ ...+|+.+.+....-.... ......+. ...+|+.|++++|.+.. ++.. +..++
T Consensus 631 L~~-lp~~~~~~-~~~~L~~L~Ls~N~l~g~i-p~l~~~l~~~~~~~L~~L~Ls~N~L~~----------lp~~~~~~l~ 697 (876)
T 4ecn_A 631 LKY-IPNIFNAK-SVYVMGSVDFSYNKIGSEG-RNISCSMDDYKGINASTVTLSYNEIQK----------FPTELFATGS 697 (876)
T ss_dssp CCS-CCSCCCTT-CSSCEEEEECCSSCTTTTS-SSCSSCTTTCCCCCEEEEECCSSCCCS----------CCHHHHHTTC
T ss_pred CCc-Cchhhhcc-ccCCCCEEECcCCcCCCcc-ccchhhhccccCCCcCEEEccCCcCCc----------cCHHHHccCC
Confidence 442 22222111 1122444444432211000 00001111 34589999999988642 1222 23578
Q ss_pred CCCcEEEeeecCCCCCcCccccc-------ccccccEEeEeCCCCCCCCCC-CC--CCCCccceeccCCcCceEeCcccc
Q 039167 747 NLKELWINKYRGKRNVVPKNWIM-------SLTNLRFLGLHEWRNCEHLPP-LG--KLPSLESLYIAGMKSVKRVGNEFL 816 (923)
Q Consensus 747 ~L~~L~l~~~~~~~~~~~p~~~~-------~l~~L~~L~L~~~~~~~~l~~-l~--~L~~L~~L~L~~~~~l~~~~~~~~ 816 (923)
+|+.|+|++|.... +|+..+. ++++|+.|+|++|... .+|. +. .+++|+.|+|++|. +..++..+
T Consensus 698 ~L~~L~Ls~N~L~~--ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~l- 772 (876)
T 4ecn_A 698 PISTIILSNNLMTS--IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNC-FSSFPTQP- 772 (876)
T ss_dssp CCSEEECCSCCCSC--CCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSC-CSSCCCGG-
T ss_pred CCCEEECCCCcCCc--cChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCC-CCccchhh-
Confidence 99999999998876 7444333 2349999999999655 6665 55 89999999999987 44444332
Q ss_pred CCCCCCCCcccccCcccceeeccccccccccccccccccccccCcccceeeecccccCCCCCcCCCCCCCccEEEeccCC
Q 039167 817 GVESDMDGSSVIAFAKLKKLTFYIMEELEEWDLGTAIKGEIIIMPRLSSLTIWSCRKLKALPDHLLQKSTLQKLEIWGGC 896 (923)
Q Consensus 817 ~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~~c 896 (923)
..+++|+.|.+.+++.+..+.+.+.+|..+..+++|+.|+|++|.. ..+|..+. ++|+.|+| ++|
T Consensus 773 -----------~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdL-s~N 837 (876)
T 4ecn_A 773 -----------LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDI-ADN 837 (876)
T ss_dssp -----------GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEEC-CSC
T ss_pred -----------hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEEC-CCC
Confidence 2688999999998888888888888899999999999999999975 89998865 79999999 888
Q ss_pred chh
Q 039167 897 HIL 899 (923)
Q Consensus 897 ~~l 899 (923)
+..
T Consensus 838 ~l~ 840 (876)
T 4ecn_A 838 PNI 840 (876)
T ss_dssp TTC
T ss_pred CCC
Confidence 753
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=1.2e-24 Score=257.69 Aligned_cols=312 Identities=16% Similarity=0.162 Sum_probs=188.4
Q ss_pred chHHhhcCCcccEEeccccCCccccccccc------------------cccccc--CCCCCcEEeccCCCCccccchhhh
Q 039167 548 LPQLFDKLTCLRALKLEVHNERLPEDFIKE------------------VPTNIE--KLLHLKYLNLANQMEIERLPETLC 607 (923)
Q Consensus 548 l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~------------------lp~~i~--~l~~L~~L~L~~~~~l~~lp~~i~ 607 (923)
+|..+.++++|++|+|++|. +.. +|..++ ++++|++|+|++|.....+|..++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~-------l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSP-------FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCC-------CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred CCHHHhcccCCCEEECcCCc-------cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 45568888999999999776 444 888888 899999999999886778888899
Q ss_pred CCCCCcEEecCCCcccc--ccCccccCC------CCCCEEeCCCCcccccCCc--CCCCCCCCCcCCceEecccCCcccc
Q 039167 608 ELYNLEHLNVNCCVKLR--ELPQGIGRL------RKLMYLDNECTVSLRYLPV--GIGKLIRLRRVKEFVVGGGYGRACS 677 (923)
Q Consensus 608 ~L~~L~~L~L~~~~~l~--~lp~~i~~L------~~L~~L~l~~~~~l~~~p~--~i~~L~~L~~L~~~~~~~~~~~~~~ 677 (923)
++++|++|++++|..+. .+|..++++ ++|++|++++| .+..+|. .++++++|++|++..+...+..+
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-- 347 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-- 347 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCcCccchh--
Confidence 99999999999886343 588888776 88999999888 4558888 78888888888877665442112
Q ss_pred cccccCCCCCCCceEeCCCCCCChhhhHHhhcCCCCC-CCcEEEEEcCCCCCCCccc----------------hHHHHhh
Q 039167 678 LGSLKKLNLLRDCRIRGLGDVSDVDEARRAELEKKKN-LFELKLHFDQAGRRENEED----------------EDERLLE 740 (923)
Q Consensus 678 l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~----------------~~~~~l~ 740 (923)
.+..+++|+.+.+....-. ..+..+..+++ |+.|++++|.+...+.... .....+.
T Consensus 348 --~~~~l~~L~~L~L~~N~l~-----~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 420 (636)
T 4eco_A 348 --AFGSEIKLASLNLAYNQIT-----EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420 (636)
T ss_dssp --CCEEEEEESEEECCSSEEE-----ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTC
T ss_pred --hhCCCCCCCEEECCCCccc-----cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchh
Confidence 2333334444433321100 11133445555 6666666665432110000 0001111
Q ss_pred cCC-------CCCCCCcEEEeeecCCCCCcCcccccccccccEEeEeCCCCCCCCCC--CC-------CCCCccceeccC
Q 039167 741 ALG-------PPPNLKELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRNCEHLPP--LG-------KLPSLESLYIAG 804 (923)
Q Consensus 741 ~l~-------~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~-------~L~~L~~L~L~~ 804 (923)
.+. ..++|+.|++++|.... +|+.++..+++|+.|+|++|... .+|. +. ++++|+.|+|++
T Consensus 421 ~l~~~~~~~~~~~~L~~L~Ls~N~l~~--lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~ 497 (636)
T 4eco_A 421 NFDPLDPTPFKGINVSSINLSNNQISK--FPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRF 497 (636)
T ss_dssp SSCTTCSSCCCCCCEEEEECCSSCCCS--CCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCS
T ss_pred hhcccccccccCCCCCEEECcCCccCc--CCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcC
Confidence 222 33455555555555444 43333334555555555555433 3332 11 122555555555
Q ss_pred CcCceEeCccccCCCCCCCCcccccCcccceeeccccccccccccccccccccccCcccceeeec------ccccCCCCC
Q 039167 805 MKSVKRVGNEFLGVESDMDGSSVIAFAKLKKLTFYIMEELEEWDLGTAIKGEIIIMPRLSSLTIW------SCRKLKALP 878 (923)
Q Consensus 805 ~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~lp~L~~L~l~------~c~~l~~lp 878 (923)
|. +..++..+.. ..+++|+.|.+.++ .+.+ +|..+..+++|+.|+++ +|.....+|
T Consensus 498 N~-l~~lp~~~~~----------~~l~~L~~L~Ls~N------~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p 559 (636)
T 4eco_A 498 NK-LTKLSDDFRA----------TTLPYLVGIDLSYN------SFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559 (636)
T ss_dssp SC-CCBCCGGGST----------TTCTTCCEEECCSS------CCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred Cc-CCccChhhhh----------ccCCCcCEEECCCC------CCCC-cChhhhcCCCCCEEECCCCcccccCcccccCh
Confidence 54 3333322110 14667777766654 3333 56667788888888884 455566788
Q ss_pred cCCCCCCCccEEEeccCCch
Q 039167 879 DHLLQKSTLQKLEIWGGCHI 898 (923)
Q Consensus 879 ~~l~~l~sL~~L~l~~~c~~ 898 (923)
..+.++++|++|++ ++|..
T Consensus 560 ~~l~~l~~L~~L~L-s~N~l 578 (636)
T 4eco_A 560 EGITLCPSLTQLQI-GSNDI 578 (636)
T ss_dssp TTGGGCSSCCEEEC-CSSCC
T ss_pred HHHhcCCCCCEEEC-CCCcC
Confidence 88888888888888 66654
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=6.3e-24 Score=257.72 Aligned_cols=290 Identities=19% Similarity=0.122 Sum_probs=177.7
Q ss_pred cccccccCCCCCcEEeccCCCCccccchh-hhCCCCCcEEecCCCccccccCccccCCC-CCCEEeCCCCcccccCCcCC
Q 039167 577 EVPTNIEKLLHLKYLNLANQMEIERLPET-LCELYNLEHLNVNCCVKLRELPQGIGRLR-KLMYLDNECTVSLRYLPVGI 654 (923)
Q Consensus 577 ~lp~~i~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~L~-~L~~L~l~~~~~l~~~p~~i 654 (923)
.+|..++++++|++|+|++|.....+|.. ++++++|++|++++|.....+|..+..+. +|++|++++|.....+|..+
T Consensus 309 ~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~ 388 (768)
T 3rgz_A 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTT
T ss_pred ccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhh
Confidence 34444555555555555555411244443 55555555555555542224555555554 55555555554333444444
Q ss_pred CC--CCCCCcCCceEecccCCcccccccccCCCCCCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCcc
Q 039167 655 GK--LIRLRRVKEFVVGGGYGRACSLGSLKKLNLLRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEE 732 (923)
Q Consensus 655 ~~--L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 732 (923)
.. +++|++|++..+......+ ..+..+++|+.+.+....- ....+..+..+++|+.|+++.|.+..
T Consensus 389 ~~~~~~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~Ls~N~l----~~~~p~~l~~l~~L~~L~L~~n~l~~----- 456 (768)
T 3rgz_A 389 CQNPKNTLQELYLQNNGFTGKIP---PTLSNCSELVSLHLSFNYL----SGTIPSSLGSLSKLRDLKLWLNMLEG----- 456 (768)
T ss_dssp TCSTTCCCCEEECCSSEEEEECC---GGGGGCTTCCEEECCSSEE----ESCCCGGGGGCTTCCEEECCSSCCCS-----
T ss_pred hhcccCCccEEECCCCccccccC---HHHhcCCCCCEEECcCCcc----cCcccHHHhcCCCCCEEECCCCcccC-----
Confidence 44 4555555554433322112 2234444555555443211 01122456677888888888887542
Q ss_pred chHHHHhhcCCCCCCCCcEEEeeecCCCCCcCcccccccccccEEeEeCCCCCCCCCC-CCCCCCccceeccCCcCceEe
Q 039167 733 DEDERLLEALGPPPNLKELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRNCEHLPP-LGKLPSLESLYIAGMKSVKRV 811 (923)
Q Consensus 733 ~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~~l~~~ 811 (923)
.++..+..+++|+.|++++|.... ..|.++..+++|+.|+|++|.....+|. ++.+++|++|+|++|.....+
T Consensus 457 ----~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 530 (768)
T 3rgz_A 457 ----EIPQELMYVKTLETLILDFNDLTG--EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530 (768)
T ss_dssp ----CCCGGGGGCTTCCEEECCSSCCCS--CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEEC
T ss_pred ----cCCHHHcCCCCceEEEecCCcccC--cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcC
Confidence 234556678899999999998775 3388899999999999999987777776 889999999999999844455
Q ss_pred CccccCCCCCCCCcccccCcccceeecccc--------------------------------------------------
Q 039167 812 GNEFLGVESDMDGSSVIAFAKLKKLTFYIM-------------------------------------------------- 841 (923)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~-------------------------------------------------- 841 (923)
+..+. .+++|+.|.+.++
T Consensus 531 p~~l~------------~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (768)
T 3rgz_A 531 PAELG------------DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG 598 (768)
T ss_dssp CGGGG------------GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTT
T ss_pred CHHHc------------CCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccc
Confidence 54432 2223333322221
Q ss_pred --------------------------------------ccccccccccccccccccCcccceeeecccccCCCCCcCCCC
Q 039167 842 --------------------------------------EELEEWDLGTAIKGEIIIMPRLSSLTIWSCRKLKALPDHLLQ 883 (923)
Q Consensus 842 --------------------------------------~~L~~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~ 883 (923)
-+++.+.+.+.+|..++.+++|+.|++++|.....+|..+.+
T Consensus 599 ~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~ 678 (768)
T 3rgz_A 599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD 678 (768)
T ss_dssp CCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred ccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhC
Confidence 134445566677888888888888999888776788888888
Q ss_pred CCCccEEEeccCCc
Q 039167 884 KSTLQKLEIWGGCH 897 (923)
Q Consensus 884 l~sL~~L~l~~~c~ 897 (923)
+++|+.|++ ++|.
T Consensus 679 L~~L~~LdL-s~N~ 691 (768)
T 3rgz_A 679 LRGLNILDL-SSNK 691 (768)
T ss_dssp CTTCCEEEC-CSSC
T ss_pred CCCCCEEEC-CCCc
Confidence 889999998 5554
No 10
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=4.2e-23 Score=226.52 Aligned_cols=304 Identities=17% Similarity=0.211 Sum_probs=189.9
Q ss_pred cccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchhhh
Q 039167 528 EALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPETLC 607 (923)
Q Consensus 528 ~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~ 607 (923)
..+++|+.|.++++.+... +. +..+++|++|++++|. +..+|. +..+++|++|++++|. +..+|. +.
T Consensus 41 ~~l~~L~~L~l~~~~i~~~--~~-~~~~~~L~~L~l~~n~-------i~~~~~-~~~l~~L~~L~L~~n~-i~~~~~-~~ 107 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASI--QG-IEYLTNLEYLNLNGNQ-------ITDISP-LSNLVKLTNLYIGTNK-ITDISA-LQ 107 (347)
T ss_dssp HHHTTCSEEECCSSCCCCC--TT-GGGCTTCCEEECCSSC-------CCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GT
T ss_pred hhcccccEEEEeCCccccc--hh-hhhcCCccEEEccCCc-------cccchh-hhcCCcCCEEEccCCc-ccCchH-Hc
Confidence 4455566666665554432 22 5556666666666443 444444 5556666666666665 555543 56
Q ss_pred CCCCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEecccCCcccccccccCCCCC
Q 039167 608 ELYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLNLL 687 (923)
Q Consensus 608 ~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L 687 (923)
++++|++|++++|. +..+|. +..+++|++|++++|.....++ .++.+++|+.|++..+.... +..+..+++|
T Consensus 108 ~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~-----~~~~~~l~~L 179 (347)
T 4fmz_A 108 NLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD-----VTPIANLTDL 179 (347)
T ss_dssp TCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC-----CGGGGGCTTC
T ss_pred CCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC-----chhhccCCCC
Confidence 66666666666655 555544 5556666666666654433332 25555555555554433222 1113444445
Q ss_pred CCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCccc
Q 039167 688 RDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKNW 767 (923)
Q Consensus 688 ~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~ 767 (923)
+.+.+....-. .. ..+..+++|+.|.++++.+... ..+..+++|++|++++|.... +++
T Consensus 180 ~~L~l~~n~l~-~~-----~~~~~l~~L~~L~l~~n~l~~~-----------~~~~~~~~L~~L~l~~n~l~~--~~~-- 238 (347)
T 4fmz_A 180 YSLSLNYNQIE-DI-----SPLASLTSLHYFTAYVNQITDI-----------TPVANMTRLNSLKIGNNKITD--LSP-- 238 (347)
T ss_dssp SEEECTTSCCC-CC-----GGGGGCTTCCEEECCSSCCCCC-----------GGGGGCTTCCEEECCSSCCCC--CGG--
T ss_pred CEEEccCCccc-cc-----ccccCCCccceeecccCCCCCC-----------chhhcCCcCCEEEccCCccCC--Ccc--
Confidence 55544433211 11 1155677888888888775321 115667899999999998777 633
Q ss_pred ccccccccEEeEeCCCCCCCCCCCCCCCCccceeccCCcCceEeCccccCCCCCCCCcccccCcccceeecccccccccc
Q 039167 768 IMSLTNLRFLGLHEWRNCEHLPPLGKLPSLESLYIAGMKSVKRVGNEFLGVESDMDGSSVIAFAKLKKLTFYIMEELEEW 847 (923)
Q Consensus 768 ~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~ 847 (923)
+..+++|+.|++++|.. ..++.+..+++|++|++++|. +..++. ...+++|+.|.+.++ .
T Consensus 239 ~~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~l~~n~-l~~~~~-------------~~~l~~L~~L~L~~n-~---- 298 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQI-SDINAVKDLTKLKMLNVGSNQ-ISDISV-------------LNNLSQLNSLFLNNN-Q---- 298 (347)
T ss_dssp GTTCTTCCEEECCSSCC-CCCGGGTTCTTCCEEECCSSC-CCCCGG-------------GGGCTTCSEEECCSS-C----
T ss_pred hhcCCCCCEEECCCCcc-CCChhHhcCCCcCEEEccCCc-cCCChh-------------hcCCCCCCEEECcCC-c----
Confidence 77899999999999954 446778899999999999986 444321 236788999988766 2
Q ss_pred ccccccccccccCcccceeeecccccCCCCCcCCCCCCCccEEEeccCCc
Q 039167 848 DLGTAIKGEIIIMPRLSSLTIWSCRKLKALPDHLLQKSTLQKLEIWGGCH 897 (923)
Q Consensus 848 ~~~~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~~c~ 897 (923)
+.+..+..+..+++|+.|++++|+ +..++. +..+++|++|++ ++|+
T Consensus 299 -l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l-~~N~ 344 (347)
T 4fmz_A 299 -LGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADF-ANQV 344 (347)
T ss_dssp -CCGGGHHHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESS-SCC-
T ss_pred -CCCcChhHhhccccCCEEEccCCc-cccccC-hhhhhccceeeh-hhhc
Confidence 333444567789999999999997 555555 788999999999 7876
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=6.7e-23 Score=234.03 Aligned_cols=358 Identities=16% Similarity=0.125 Sum_probs=214.0
Q ss_pred ccceEEEEEEecCCCCCccccccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccc-cccccC
Q 039167 506 EKKILHLTLAIGCGPMPIYDNIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEV-PTNIEK 584 (923)
Q Consensus 506 ~~~~~~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~ 584 (923)
...++++.+..+......+..+..+++|++|++++|.+.....+..|.++++|++|+|++|. +..+ |..+++
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-------l~~~~~~~~~~ 101 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-------FLQLETGAFNG 101 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-------TCEECTTTTTT
T ss_pred CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-------cCccChhhccC
Confidence 35566676666655332345566777777777777765433334456677777777777654 3333 566777
Q ss_pred CCCCcEEeccCCCCccc-cchh--hhCCCCCcEEecCCCcccccc-Ccc-ccCCCCCCEEeCCCCcccccCCcCCCCC--
Q 039167 585 LLHLKYLNLANQMEIER-LPET--LCELYNLEHLNVNCCVKLREL-PQG-IGRLRKLMYLDNECTVSLRYLPVGIGKL-- 657 (923)
Q Consensus 585 l~~L~~L~L~~~~~l~~-lp~~--i~~L~~L~~L~L~~~~~l~~l-p~~-i~~L~~L~~L~l~~~~~l~~~p~~i~~L-- 657 (923)
+++|++|+|++|. +.. .|.. ++++++|++|++++|. +..+ |.. +..+++|++|++++|......|..++.+
T Consensus 102 l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 179 (455)
T 3v47_A 102 LANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG 179 (455)
T ss_dssp CTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTT
T ss_pred cccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhhhcccc
Confidence 7777777777776 443 4443 6677777777777776 4443 444 6677777777777774434444445444
Q ss_pred CCCCcCCceEecccCCccccc-----ccccCCCCCCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCcc
Q 039167 658 IRLRRVKEFVVGGGYGRACSL-----GSLKKLNLLRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEE 732 (923)
Q Consensus 658 ~~L~~L~~~~~~~~~~~~~~l-----~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 732 (923)
.+|+.|++..+.........+ ..+..++.|+.+.+.+..-........ .......+|+.|.++.+.........
T Consensus 180 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~ 258 (455)
T 3v47_A 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF-FDAIAGTKIQSLILSNSYNMGSSFGH 258 (455)
T ss_dssp CEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHH-HHHTTTCCEEEEECTTCTTTSCCTTC
T ss_pred ccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhh-hccccccceeeEeeccccccccccch
Confidence 344444433332221111000 111223344444444322111111111 11223356666666655321110000
Q ss_pred ----chHHHHhhcCCCCCCCCcEEEeeecCCCCCcCcccccccccccEEeEeCCCCCCCCC-CCCCCCCccceeccCCcC
Q 039167 733 ----DEDERLLEALGPPPNLKELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRNCEHLP-PLGKLPSLESLYIAGMKS 807 (923)
Q Consensus 733 ----~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~L~~L~~L~L~~~~~ 807 (923)
......... ...++|+.|++++|.... ++|.++..+++|+.|+|++|......| .++.+++|++|++++|.
T Consensus 259 ~~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~- 334 (455)
T 3v47_A 259 TNFKDPDNFTFKG-LEASGVKTCDLSKSKIFA--LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF- 334 (455)
T ss_dssp CSSCCCCTTTTGG-GTTSCCCEEECCSSCCCE--ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-
T ss_pred hhhccCccccccc-ccccCceEEEecCccccc--cchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc-
Confidence 000000000 124689999999998877 668889999999999999997665555 48899999999999987
Q ss_pred ceEeCccccCCCCCCCCcccccCcccceeeccccccccccccccccccccccCcccceeeecccccCCCCCc-CCCCCCC
Q 039167 808 VKRVGNEFLGVESDMDGSSVIAFAKLKKLTFYIMEELEEWDLGTAIKGEIIIMPRLSSLTIWSCRKLKALPD-HLLQKST 886 (923)
Q Consensus 808 l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~lp~-~l~~l~s 886 (923)
+..++...+ ..+++|+.|.+.++ .+.+..|..+..+++|+.|++++|. +..+|. .+..+++
T Consensus 335 l~~~~~~~~-----------~~l~~L~~L~Ls~N------~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~ 396 (455)
T 3v47_A 335 LGSIDSRMF-----------ENLDKLEVLDLSYN------HIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTS 396 (455)
T ss_dssp CCEECGGGG-----------TTCTTCCEEECCSS------CCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTT
T ss_pred cCCcChhHh-----------cCcccCCEEECCCC------cccccChhhccccccccEEECCCCc-cccCCHhHhccCCc
Confidence 555543322 25788888877765 3444445677889999999999995 566665 4578999
Q ss_pred ccEEEeccCC
Q 039167 887 LQKLEIWGGC 896 (923)
Q Consensus 887 L~~L~l~~~c 896 (923)
|+.|++ ++|
T Consensus 397 L~~L~l-~~N 405 (455)
T 3v47_A 397 LQKIWL-HTN 405 (455)
T ss_dssp CCEEEC-CSS
T ss_pred ccEEEc-cCC
Confidence 999999 554
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=2.7e-23 Score=249.88 Aligned_cols=329 Identities=14% Similarity=0.146 Sum_probs=246.6
Q ss_pred cccccccCCceEEEeCCCCCCCc----------------cchHHhh--cCCcccEEeccccCCcccccccccccccccCC
Q 039167 524 YDNIEALRGLRSLLLESTKHSSV----------------ILPQLFD--KLTCLRALKLEVHNERLPEDFIKEVPTNIEKL 585 (923)
Q Consensus 524 ~~~~~~~~~Lr~L~l~~~~~~~~----------------~l~~~~~--~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l 585 (923)
+..+.++++|++|++++|.+... .+|..+. ++++|++|+|++|. ....+|..+++|
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~------l~~~iP~~l~~L 514 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP------NMTQLPDFLYDL 514 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT------TCCSCCGGGGGC
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC------CCccChHHHhCC
Confidence 56688999999999999998761 1455555 99999999999876 467889999999
Q ss_pred CCCcEEeccCCCCcc--ccchhhhCCC-------CCcEEecCCCccccccCc--cccCCCCCCEEeCCCCcccccCCcCC
Q 039167 586 LHLKYLNLANQMEIE--RLPETLCELY-------NLEHLNVNCCVKLRELPQ--GIGRLRKLMYLDNECTVSLRYLPVGI 654 (923)
Q Consensus 586 ~~L~~L~L~~~~~l~--~lp~~i~~L~-------~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~~i 654 (923)
++|++|+|++|..+. .+|..++++. +|++|+|++|. +..+|. .++++++|++|++++|. +..+| .+
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~ 591 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AF 591 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC-cccch-hh
Confidence 999999999997354 5998888776 99999999998 779999 89999999999999994 55889 89
Q ss_pred CCCCCCCcCCceEecccCCcccccccccCCCC-CCCceEeCCCCCCChhhhHHhhcCCC--CCCCcEEEEEcCCCCCCCc
Q 039167 655 GKLIRLRRVKEFVVGGGYGRACSLGSLKKLNL-LRDCRIRGLGDVSDVDEARRAELEKK--KNLFELKLHFDQAGRRENE 731 (923)
Q Consensus 655 ~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~-L~~l~i~~~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~ 731 (923)
+.+++|+.|++..+.... .+.. +..+++ |+.|.+....-. . ++..+... ++|+.|++++|.+.....
T Consensus 592 ~~L~~L~~L~Ls~N~l~~-lp~~---l~~l~~~L~~L~Ls~N~L~-~----lp~~~~~~~~~~L~~L~Ls~N~l~g~ip- 661 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQIEE-IPED---FCAFTDQVEGLGFSHNKLK-Y----IPNIFNAKSVYVMGSVDFSYNKIGSEGR- 661 (876)
T ss_dssp CTTSEESEEECCSSCCSC-CCTT---SCEECTTCCEEECCSSCCC-S----CCSCCCTTCSSCEEEEECCSSCTTTTSS-
T ss_pred cCCCcceEEECcCCcccc-chHH---HhhccccCCEEECcCCCCC-c----CchhhhccccCCCCEEECcCCcCCCccc-
Confidence 999999999887766542 2223 444555 666666543211 1 11233333 459999999988643110
Q ss_pred cchHHHHhhcCC--CCCCCCcEEEeeecCCCCCcCcccccccccccEEeEeCCCCCCCCCC-C--------CCCCCccce
Q 039167 732 EDEDERLLEALG--PPPNLKELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRNCEHLPP-L--------GKLPSLESL 800 (923)
Q Consensus 732 ~~~~~~~l~~l~--~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l--------~~L~~L~~L 800 (923)
.+...+. ..++|+.|++++|.... +|+.++..+++|+.|+|++|... .+|. + .++++|+.|
T Consensus 662 -----~l~~~l~~~~~~~L~~L~Ls~N~L~~--lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L 733 (876)
T 4ecn_A 662 -----NISCSMDDYKGINASTVTLSYNEIQK--FPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTI 733 (876)
T ss_dssp -----SCSSCTTTCCCCCEEEEECCSSCCCS--CCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEE
T ss_pred -----cchhhhccccCCCcCEEEccCCcCCc--cCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEE
Confidence 0111122 34589999999999887 85555568999999999999655 5554 2 234599999
Q ss_pred eccCCcCceEeCccccCCCCCCCCcccccCcccceeeccccccccccccccccccccccCcccceeeecc------cccC
Q 039167 801 YIAGMKSVKRVGNEFLGVESDMDGSSVIAFAKLKKLTFYIMEELEEWDLGTAIKGEIIIMPRLSSLTIWS------CRKL 874 (923)
Q Consensus 801 ~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~lp~L~~L~l~~------c~~l 874 (923)
+|++|. +..++..+.. ..+++|+.|.+.++ .+ .+ +|..+..+++|+.|+|++ |...
T Consensus 734 ~Ls~N~-L~~lp~~l~~----------~~l~~L~~L~Ls~N-~L-----~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~ 795 (876)
T 4ecn_A 734 DLRFNK-LTSLSDDFRA----------TTLPYLSNMDVSYN-CF-----SS-FPTQPLNSSQLKAFGIRHQRDAEGNRIL 795 (876)
T ss_dssp ECCSSC-CCCCCGGGST----------TTCTTCCEEECCSS-CC-----SS-CCCGGGGCTTCCEEECCCCBCTTCCBCC
T ss_pred ECCCCC-CccchHHhhh----------ccCCCcCEEEeCCC-CC-----Cc-cchhhhcCCCCCEEECCCCCCccccccc
Confidence 999996 6666544321 15789999988765 33 33 566788999999999987 5556
Q ss_pred CCCCcCCCCCCCccEEEeccCCch
Q 039167 875 KALPDHLLQKSTLQKLEIWGGCHI 898 (923)
Q Consensus 875 ~~lp~~l~~l~sL~~L~l~~~c~~ 898 (923)
..+|..+.++++|+.|++ ++|..
T Consensus 796 ~~ip~~l~~L~~L~~L~L-s~N~L 818 (876)
T 4ecn_A 796 RQWPTGITTCPSLIQLQI-GSNDI 818 (876)
T ss_dssp CCCCTTGGGCSSCCEEEC-CSSCC
T ss_pred ccChHHHhcCCCCCEEEC-CCCCC
Confidence 678999999999999999 78764
No 13
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=1.7e-22 Score=234.86 Aligned_cols=355 Identities=15% Similarity=0.091 Sum_probs=200.5
Q ss_pred cceEEEEEEecCCCCCccccccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCC
Q 039167 507 KKILHLTLAIGCGPMPIYDNIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLL 586 (923)
Q Consensus 507 ~~~~~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~ 586 (923)
..++++.+..+......+..+..+++|++|++++|.+... .+..|.++++|++|+|++|. +..+|.. .++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~-------l~~lp~~--~l~ 90 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNK-------LVKISCH--PTV 90 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSC-------CCEEECC--CCC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCc-------eeecCcc--ccC
Confidence 5677888877776443445677888888888888887654 35568888888888888765 6677766 788
Q ss_pred CCcEEeccCCCCccc--cchhhhCCCCCcEEecCCCccccccCccccCCCCC--CEEeCCCCcc--cccCCcCCCC----
Q 039167 587 HLKYLNLANQMEIER--LPETLCELYNLEHLNVNCCVKLRELPQGIGRLRKL--MYLDNECTVS--LRYLPVGIGK---- 656 (923)
Q Consensus 587 ~L~~L~L~~~~~l~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L--~~L~l~~~~~--l~~~p~~i~~---- 656 (923)
+|++|+|++|. +.. +|..++++++|++|++++|. +.. ..+..+++| ++|++++|.. ....|..++.
T Consensus 91 ~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~ 166 (520)
T 2z7x_B 91 NLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTE 166 (520)
T ss_dssp CCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEE
T ss_pred CccEEeccCCc-cccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeecccccccccccccccccccc
Confidence 88888888887 554 57788888888888888876 443 346667777 8888877744 3334444433
Q ss_pred ----------------------CCCCCcCCceEecccCC---cccccccccCCC--------------------------
Q 039167 657 ----------------------LIRLRRVKEFVVGGGYG---RACSLGSLKKLN-------------------------- 685 (923)
Q Consensus 657 ----------------------L~~L~~L~~~~~~~~~~---~~~~l~~L~~L~-------------------------- 685 (923)
+++|+.|++..+..... ....+..+..++
T Consensus 167 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~ 246 (520)
T 2z7x_B 167 SLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWH 246 (520)
T ss_dssp EEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHT
T ss_pred eEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhh
Confidence 44555555544320000 000001111111
Q ss_pred -CCCCceEeCCC---CCCChhhhHHhhc-----CCCCCCCcEEEEEcCCCCCCCccchHHHH------------------
Q 039167 686 -LLRDCRIRGLG---DVSDVDEARRAEL-----EKKKNLFELKLHFDQAGRRENEEDEDERL------------------ 738 (923)
Q Consensus 686 -~L~~l~i~~~~---~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~------------------ 738 (923)
+|+.+.+.... .++ ..+ ..+++|+.++++.+.+ ..+. ......
T Consensus 247 ~~L~~L~l~~n~l~~~~p-------~~~~~~~~~~l~~L~~l~l~~n~~-~~p~--~~~~~~~~~~~L~~L~l~~n~l~~ 316 (520)
T 2z7x_B 247 TTVWYFSISNVKLQGQLD-------FRDFDYSGTSLKALSIHQVVSDVF-GFPQ--SYIYEIFSNMNIKNFTVSGTRMVH 316 (520)
T ss_dssp SSCSEEEEEEEEEESCCC-------CCCCCCCSCCCCEEEEEEEEECCC-CSCT--HHHHHHHHTCCCSEEEEESSCCCC
T ss_pred CcccEEEeecccccCccc-------cchhhcccccCceeEeccccccce-ecch--hhhhcccccCceeEEEcCCCcccc
Confidence 22222222110 111 111 2333333334433332 0000 000000
Q ss_pred hhcCCCCCCCCcEEEeeecCCCCCcCcccccccccccEEeEeCCCCCC--CCCC-CCCCCCccceeccCCcCceE-eCcc
Q 039167 739 LEALGPPPNLKELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRNCE--HLPP-LGKLPSLESLYIAGMKSVKR-VGNE 814 (923)
Q Consensus 739 l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~--~l~~-l~~L~~L~~L~L~~~~~l~~-~~~~ 814 (923)
......+++|+.|++++|.... ..|.++..+++|+.|+|++|.... .+|. ++.+++|++|++++|. +.. ++..
T Consensus 317 ~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~ 393 (520)
T 2z7x_B 317 MLCPSKISPFLHLDFSNNLLTD--TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKG 393 (520)
T ss_dssp CCCCSSCCCCCEEECCSSCCCT--TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGC
T ss_pred ccchhhCCcccEEEeECCccCh--hhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc-CCcccccc
Confidence 0001345666666666665544 225556666666666666664432 2222 5566666666666665 332 3322
Q ss_pred ccCC----------CCCCCCcccccC-cccceeeccccccccccccccccccccccCcccceeeecccccCCCCCcC-CC
Q 039167 815 FLGV----------ESDMDGSSVIAF-AKLKKLTFYIMEELEEWDLGTAIKGEIIIMPRLSSLTIWSCRKLKALPDH-LL 882 (923)
Q Consensus 815 ~~~~----------~~~~~~~~~~~f-~~L~~L~l~~~~~L~~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~-l~ 882 (923)
.+.. .+.+....+..+ ++|+.|.+.++ .++ .+|..+..+++|+.|++++|. +..+|.. +.
T Consensus 394 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~------~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~ 465 (520)
T 2z7x_B 394 DCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIK------SIPKQVVKLEALQELNVASNQ-LKSVPDGIFD 465 (520)
T ss_dssp SCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCC------CCCGGGGGCTTCCEEECCSSC-CCCCCTTTTT
T ss_pred hhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-ccc------ccchhhhcCCCCCEEECCCCc-CCccCHHHhc
Confidence 1110 011111112233 57777776655 333 345556689999999999995 6688886 88
Q ss_pred CCCCccEEEeccCCc
Q 039167 883 QKSTLQKLEIWGGCH 897 (923)
Q Consensus 883 ~l~sL~~L~l~~~c~ 897 (923)
.+++|++|++ +++|
T Consensus 466 ~l~~L~~L~l-~~N~ 479 (520)
T 2z7x_B 466 RLTSLQKIWL-HTNP 479 (520)
T ss_dssp TCTTCCEEEC-CSSC
T ss_pred cCCcccEEEC-cCCC
Confidence 8999999999 6654
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=2.3e-22 Score=238.54 Aligned_cols=146 Identities=17% Similarity=0.155 Sum_probs=111.8
Q ss_pred ccceEEEEEEecCCCCCccccccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccc-cccccC
Q 039167 506 EKKILHLTLAIGCGPMPIYDNIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEV-PTNIEK 584 (923)
Q Consensus 506 ~~~~~~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~ 584 (923)
...++.+.+..+.........+.++++|++|++++|.+..+. +..|.++++|++|+|++|. +..+ |..+++
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~-~~~~~~l~~L~~L~Ls~n~-------l~~~~p~~~~~ 102 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE-DKAWHGLHHLSNLILTGNP-------IQSFSPGSFSG 102 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCC-------CCCCCTTSSTT
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccC-HHHhhchhhcCEeECCCCc-------ccccChhhcCC
Confidence 467788888777664334456788899999999998876543 5568889999999999765 5555 778889
Q ss_pred CCCCcEEeccCCCCccccc-hhhhCCCCCcEEecCCCcccc--ccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCC
Q 039167 585 LLHLKYLNLANQMEIERLP-ETLCELYNLEHLNVNCCVKLR--ELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLR 661 (923)
Q Consensus 585 l~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~ 661 (923)
+++|++|+|++|. +..+| ..++++++|++|++++|. +. .+|..++++++|++|++++|......|..++.+++|+
T Consensus 103 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3vq2_A 103 LTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP 180 (606)
T ss_dssp CTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCT
T ss_pred cccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccc
Confidence 9999999999998 76666 678899999999999987 54 5788899999999999998854443455566665554
No 15
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=1.3e-22 Score=243.93 Aligned_cols=156 Identities=17% Similarity=0.099 Sum_probs=123.0
Q ss_pred ccceEEEEEEecCCCCCccccccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccc-cccC
Q 039167 506 EKKILHLTLAIGCGPMPIYDNIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPT-NIEK 584 (923)
Q Consensus 506 ~~~~~~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~ 584 (923)
+..++++.+..+.........+..+++|++|++++|.+.... +..|.++++|++|+|++|. +..+|. .+++
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~-------l~~l~~~~~~~ 95 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE-PELCQKLPMLKVLNLQHNE-------LSQLSDKTFAF 95 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCC-TTHHHHCTTCCEEECCSSC-------CCCCCTTTTTT
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccC-HHHHhcccCcCEEECCCCc-------cCccChhhhcc
Confidence 467889999888765444556889999999999999876643 6668999999999999775 777876 5899
Q ss_pred CCCCcEEeccCCCCccccc-hhhhCCCCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCc-CC--CCCCCC
Q 039167 585 LLHLKYLNLANQMEIERLP-ETLCELYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPV-GI--GKLIRL 660 (923)
Q Consensus 585 l~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~-~i--~~L~~L 660 (923)
+.+|++|+|++|. +..+| ..++++++|++|++++|......|..++++++|++|++++|. +..++. .+ ..+++|
T Consensus 96 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L 173 (680)
T 1ziw_A 96 CTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSL 173 (680)
T ss_dssp CTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEE
T ss_pred CCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccc
Confidence 9999999999998 77776 679999999999999998444456678899999999999984 444443 22 345788
Q ss_pred CcCCceEeccc
Q 039167 661 RRVKEFVVGGG 671 (923)
Q Consensus 661 ~~L~~~~~~~~ 671 (923)
+.|++..+...
T Consensus 174 ~~L~L~~n~l~ 184 (680)
T 1ziw_A 174 KKLELSSNQIK 184 (680)
T ss_dssp SEEECTTCCCC
T ss_pred cEEECCCCccc
Confidence 88877655443
No 16
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=2.7e-22 Score=223.77 Aligned_cols=306 Identities=17% Similarity=0.110 Sum_probs=231.8
Q ss_pred cccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCccccccccccc-ccccCCCCCcEEeccCCCCccccc-hh
Q 039167 528 EALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVP-TNIEKLLHLKYLNLANQMEIERLP-ET 605 (923)
Q Consensus 528 ~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~l~~lp-~~ 605 (923)
..+.+++.|.+.++.+..+ ++..|..+++|++|++++|. +..+| ..+..+++|++|+|++|. +..+| ..
T Consensus 42 ~~l~~l~~l~l~~~~l~~l-~~~~~~~l~~L~~L~L~~n~-------i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 112 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQ-------IEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHV 112 (390)
T ss_dssp GGGCCCSEEEEESCEESEE-CTHHHHHCCCCSEEECTTSC-------CCEECTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred cccCCceEEEecCCchhhC-ChhHhcccccCcEEECCCCc-------ccccChhhccCCCCcCEEECCCCC-CCcCCHHH
Confidence 4578999999999886654 35567899999999999765 66665 478999999999999998 77665 56
Q ss_pred hhCCCCCcEEecCCCccccccCccc-cCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEecccCCcccccccccCC
Q 039167 606 LCELYNLEHLNVNCCVKLRELPQGI-GRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKL 684 (923)
Q Consensus 606 i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L 684 (923)
++++++|++|++++|. +..+|..+ ..+++|++|++++|......|..++.+++|++|++..+..... .+..+
T Consensus 113 ~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~l 185 (390)
T 3o6n_A 113 FQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV------DLSLI 185 (390)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC------CGGGC
T ss_pred hcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc------ccccc
Confidence 8999999999999997 88888774 8899999999999854433455688999999998876654431 24445
Q ss_pred CCCCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcC
Q 039167 685 NLLRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVP 764 (923)
Q Consensus 685 ~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~ 764 (923)
+.|+.+.+....- ..+....+|+.|++++|.+.. + ....+++|+.|++++|....
T Consensus 186 ~~L~~L~l~~n~l---------~~~~~~~~L~~L~l~~n~l~~----------~--~~~~~~~L~~L~l~~n~l~~---- 240 (390)
T 3o6n_A 186 PSLFHANVSYNLL---------STLAIPIAVEELDASHNSINV----------V--RGPVNVELTILKLQHNNLTD---- 240 (390)
T ss_dssp TTCSEEECCSSCC---------SEEECCSSCSEEECCSSCCCE----------E--ECCCCSSCCEEECCSSCCCC----
T ss_pred cccceeecccccc---------cccCCCCcceEEECCCCeeee----------c--cccccccccEEECCCCCCcc----
Confidence 5566555544211 223445689999999887532 1 11235799999999998876
Q ss_pred cccccccccccEEeEeCCCCCCCCCC-CCCCCCccceeccCCcCceEeCccccCCCCCCCCcccccCcccceeecccccc
Q 039167 765 KNWIMSLTNLRFLGLHEWRNCEHLPP-LGKLPSLESLYIAGMKSVKRVGNEFLGVESDMDGSSVIAFAKLKKLTFYIMEE 843 (923)
Q Consensus 765 p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~ 843 (923)
+.++..+++|+.|+|++|......|. ++.+++|+.|++++|. +..++... ..+++|+.|.+.++ .
T Consensus 241 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~------------~~l~~L~~L~L~~n-~ 306 (390)
T 3o6n_A 241 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYG------------QPIPTLKVLDLSHN-H 306 (390)
T ss_dssp CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSS------------SCCTTCCEEECCSS-C
T ss_pred cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCccc------------CCCCCCCEEECCCC-c
Confidence 35788999999999999976655444 8899999999999987 55554321 26889999998876 4
Q ss_pred ccccccccccccccccCcccceeeecccccCCCCCcCCCCCCCccEEEeccCCch
Q 039167 844 LEEWDLGTAIKGEIIIMPRLSSLTIWSCRKLKALPDHLLQKSTLQKLEIWGGCHI 898 (923)
Q Consensus 844 L~~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~~c~~ 898 (923)
+.. +|..+..+++|+.|++++|+ +..+| +..+++|+.|++ +++|-
T Consensus 307 l~~------~~~~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l-~~N~~ 351 (390)
T 3o6n_A 307 LLH------VERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTL-SHNDW 351 (390)
T ss_dssp CCC------CGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEEC-CSSCE
T ss_pred cee------cCccccccCcCCEEECCCCc-cceeC--chhhccCCEEEc-CCCCc
Confidence 442 34456689999999999996 56665 677899999999 77653
No 17
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=2e-22 Score=239.06 Aligned_cols=275 Identities=15% Similarity=0.054 Sum_probs=166.7
Q ss_pred ccceEEEEEEecCCCCCccccccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccc-cccccC
Q 039167 506 EKKILHLTLAIGCGPMPIYDNIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEV-PTNIEK 584 (923)
Q Consensus 506 ~~~~~~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~ 584 (923)
+..++++.+..+......+..+..+++|++|++++|.+.... +..|.++++|++|+|++|. +..+ |..+++
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~-------l~~~~~~~~~~ 103 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH-EDTFQSQHRLDTLVLTANP-------LIFMAETALSG 103 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCC-------CSEECTTTTSS
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeC-hhhccCccccCeeeCCCCc-------ccccChhhhcc
Confidence 456788888877764434567888999999999998876543 5568899999999999776 4444 667888
Q ss_pred CCCCcEEeccCCCCcccc-chhhhCCCCCcEEecCCCccccccC-ccccCCCCCCEEeCCCCcccccCCcCCCCCCCCC-
Q 039167 585 LLHLKYLNLANQMEIERL-PETLCELYNLEHLNVNCCVKLRELP-QGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLR- 661 (923)
Q Consensus 585 l~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~- 661 (923)
+++|++|++++|. +..+ |..++++++|++|++++|. +..++ ..+..+++|++|++++|......|..++.+++|+
T Consensus 104 l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 181 (606)
T 3t6q_A 104 PKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATN 181 (606)
T ss_dssp CTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCS
T ss_pred cccccEeeccccC-cccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhhcccce
Confidence 9999999999988 7766 5678889999999999887 65542 3344588999999988844333355567777777
Q ss_pred -cCCceEecccCCccccccc--cc---------------CCC-------------------------------CCCCceE
Q 039167 662 -RVKEFVVGGGYGRACSLGS--LK---------------KLN-------------------------------LLRDCRI 692 (923)
Q Consensus 662 -~L~~~~~~~~~~~~~~l~~--L~---------------~L~-------------------------------~L~~l~i 692 (923)
+|++..+......+..+.. ++ .+. .|+.+.+
T Consensus 182 l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l 261 (606)
T 3t6q_A 182 LSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL 261 (606)
T ss_dssp EEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEEC
T ss_pred eEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEe
Confidence 4433322221100000000 00 000 0111111
Q ss_pred eCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCcccccccc
Q 039167 693 RGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKNWIMSLT 772 (923)
Q Consensus 693 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~ 772 (923)
.... + .......+..+++|+.|++++|.+.. ++..+..+++|++|++++|.... ++|..+..++
T Consensus 262 ~~n~-l---~~~~~~~~~~l~~L~~L~l~~n~l~~----------lp~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~l~ 325 (606)
T 3t6q_A 262 QKHY-F---FNISSNTFHCFSGLQELDLTATHLSE----------LPSGLVGLSTLKKLVLSANKFEN--LCQISASNFP 325 (606)
T ss_dssp TTCC-C---SSCCTTTTTTCTTCSEEECTTSCCSC----------CCSSCCSCTTCCEEECTTCCCSB--GGGGCGGGCT
T ss_pred ecCc-c---CccCHHHhccccCCCEEeccCCccCC----------CChhhcccccCCEEECccCCcCc--CchhhhhccC
Confidence 1100 0 00111225566777777777766432 33345556666666666666554 4455556666
Q ss_pred cccEEeEeCCCCCCCCCC--CCCCCCccceeccCCc
Q 039167 773 NLRFLGLHEWRNCEHLPP--LGKLPSLESLYIAGMK 806 (923)
Q Consensus 773 ~L~~L~L~~~~~~~~l~~--l~~L~~L~~L~L~~~~ 806 (923)
+|+.|++++|.....++. ++.+++|++|++++|.
T Consensus 326 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 361 (606)
T 3t6q_A 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361 (606)
T ss_dssp TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC
T ss_pred cCCEEECCCCCcccccchhhhhccCcCCEEECCCCc
Confidence 666666666654434433 5556666666666554
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=1.5e-22 Score=237.14 Aligned_cols=362 Identities=16% Similarity=0.178 Sum_probs=222.3
Q ss_pred cceEEEEEEecCCCCCccccccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCccccccccccccc-ccCC
Q 039167 507 KKILHLTLAIGCGPMPIYDNIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTN-IEKL 585 (923)
Q Consensus 507 ~~~~~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~-i~~l 585 (923)
..++.+.+..+......+..+..+++|++|++++|.+.... +..|.++++|++|++++|. +..+|.. ++++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~-------l~~~~~~~~~~l 97 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIE-GDAFYSLGSLEHLDLSDNH-------LSSLSSSWFGPL 97 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTSC-------CCSCCHHHHTTC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccC-hhhccccccCCEEECCCCc-------cCccCHHHhccC
Confidence 56788888777654333456788899999999998876543 4558888999999999765 5566554 8889
Q ss_pred CCCcEEeccCCCCcc--ccchhhhCCCCCcEEecCCCccccccC-ccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCc
Q 039167 586 LHLKYLNLANQMEIE--RLPETLCELYNLEHLNVNCCVKLRELP-QGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRR 662 (923)
Q Consensus 586 ~~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~ 662 (923)
++|++|++++|. +. ..|..++++++|++|++++|..+..+| ..+..+++|++|++++|......|..++.+++|++
T Consensus 98 ~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 176 (549)
T 2z81_A 98 SSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176 (549)
T ss_dssp TTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred CCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCce
Confidence 999999999988 66 346778889999999998887667776 46888888999998888655556777776666655
Q ss_pred CCceEecc------------------------cCCccccccc---c-------------------------cCCCCCCCc
Q 039167 663 VKEFVVGG------------------------GYGRACSLGS---L-------------------------KKLNLLRDC 690 (923)
Q Consensus 663 L~~~~~~~------------------------~~~~~~~l~~---L-------------------------~~L~~L~~l 690 (923)
|++..+.. .........- + ..+..|+.+
T Consensus 177 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l 256 (549)
T 2z81_A 177 LTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV 256 (549)
T ss_dssp EEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEE
T ss_pred EecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccc
Confidence 54433221 1100000000 0 001111111
Q ss_pred eEeCC-----CCC------------------------CCh------hh-------------------hHHhhc-CCCCCC
Q 039167 691 RIRGL-----GDV------------------------SDV------DE-------------------ARRAEL-EKKKNL 715 (923)
Q Consensus 691 ~i~~~-----~~~------------------------~~~------~~-------------------~~~~~l-~~~~~L 715 (923)
.+... ... +.. .. ..+..+ ..+++|
T Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L 336 (549)
T 2z81_A 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSL 336 (549)
T ss_dssp EEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTC
T ss_pred ccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccc
Confidence 11100 000 000 00 000000 124455
Q ss_pred CcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCc--ccccccccccEEeEeCCCCCCCCCC-CC
Q 039167 716 FELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPK--NWIMSLTNLRFLGLHEWRNCEHLPP-LG 792 (923)
Q Consensus 716 ~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p--~~~~~l~~L~~L~L~~~~~~~~l~~-l~ 792 (923)
+.|+++.|.+.. ........+..+++|+.|++++|.... +++ ..+..+++|+.|+|++|... .+|. ++
T Consensus 337 ~~L~Ls~N~l~~------~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~ 407 (549)
T 2z81_A 337 EFLDLSENLMVE------EYLKNSACKGAWPSLQTLVLSQNHLRS--MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQ 407 (549)
T ss_dssp CEEECCSSCCCH------HHHHHHTCTTSSTTCCEEECTTSCCCC--HHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCC
T ss_pred cEEEccCCcccc------ccccchhhhhccccCcEEEccCCcccc--cccchhhhhcCCCCCEEECCCCCCc-cCChhhc
Confidence 555555544221 000112335667888888888887765 522 34678889999999988554 5554 77
Q ss_pred CCCCccceeccCCcCceEeCccccC-------CCCCCCCcccccCcccceeeccccccccccccccccccccccCcccce
Q 039167 793 KLPSLESLYIAGMKSVKRVGNEFLG-------VESDMDGSSVIAFAKLKKLTFYIMEELEEWDLGTAIKGEIIIMPRLSS 865 (923)
Q Consensus 793 ~L~~L~~L~L~~~~~l~~~~~~~~~-------~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~lp~L~~ 865 (923)
.+++|++|++++|. +..++..+.. ..+.+.. ....+++|+.|.+.++ +++. +|. ...+++|+.
T Consensus 408 ~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~-~~~~l~~L~~L~Ls~N-~l~~------ip~-~~~l~~L~~ 477 (549)
T 2z81_A 408 WPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDS-FSLFLPRLQELYISRN-KLKT------LPD-ASLFPVLLV 477 (549)
T ss_dssp CCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSC-CCCCCTTCCEEECCSS-CCSS------CCC-GGGCTTCCE
T ss_pred ccccccEEECCCCC-cccccchhcCCceEEECCCCChhh-hcccCChhcEEECCCC-ccCc------CCC-cccCccCCE
Confidence 88889999998887 5444432211 0111111 1235677888777765 4442 232 346899999
Q ss_pred eeecccccCCCCCcCCCCCCCccEEEeccCCc
Q 039167 866 LTIWSCRKLKALPDHLLQKSTLQKLEIWGGCH 897 (923)
Q Consensus 866 L~l~~c~~l~~lp~~l~~l~sL~~L~l~~~c~ 897 (923)
|++++|......|..+..+++|+.|++ ++||
T Consensus 478 L~Ls~N~l~~~~~~~~~~l~~L~~L~l-~~N~ 508 (549)
T 2z81_A 478 MKISRNQLKSVPDGIFDRLTSLQKIWL-HTNP 508 (549)
T ss_dssp EECCSSCCCCCCTTGGGGCTTCCEEEC-CSSC
T ss_pred EecCCCccCCcCHHHHhcCcccCEEEe-cCCC
Confidence 999999644444455888999999999 6655
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=4e-22 Score=234.80 Aligned_cols=306 Identities=16% Similarity=0.107 Sum_probs=233.1
Q ss_pred cccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCccccccccccc-ccccCCCCCcEEeccCCCCccccch-h
Q 039167 528 EALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVP-TNIEKLLHLKYLNLANQMEIERLPE-T 605 (923)
Q Consensus 528 ~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~-~ 605 (923)
..+.+++.+.+.++.+..+ ++..|.++++|++|+|++|. +..+| ..++.+++|++|+|++|. +..+|. .
T Consensus 48 l~l~~l~~l~l~~~~l~~l-p~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 118 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQ-------IEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHV 118 (597)
T ss_dssp GGGCCCSEEEESSCEESEE-CTHHHHHCCCCSEEECTTSC-------CCEECTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred ccCCCceEEEeeCCCCCCc-CHHHHccCCCCcEEECCCCC-------CCCCChHHhcCCCCCCEEECCCCc-CCCCCHHH
Confidence 3568899999999886654 35668899999999999775 66665 478999999999999998 776664 5
Q ss_pred hhCCCCCcEEecCCCccccccCcc-ccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEecccCCcccccccccCC
Q 039167 606 LCELYNLEHLNVNCCVKLRELPQG-IGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKL 684 (923)
Q Consensus 606 i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L 684 (923)
++++++|++|+|++|. +..+|.. ++.+++|++|++++|......|..++.+++|++|++..+..... .+..+
T Consensus 119 ~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------~~~~l 191 (597)
T 3oja_B 119 FQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV------DLSLI 191 (597)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC------CGGGC
T ss_pred HcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc------Chhhh
Confidence 7999999999999997 8888877 48999999999999955444455789999999998876654431 23445
Q ss_pred CCCCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcC
Q 039167 685 NLLRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVP 764 (923)
Q Consensus 685 ~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~ 764 (923)
+.|+.+.+....- ..+....+|+.|++++|.+.. +.. ..+++|+.|++++|....
T Consensus 192 ~~L~~L~l~~n~l---------~~l~~~~~L~~L~ls~n~l~~----------~~~--~~~~~L~~L~L~~n~l~~---- 246 (597)
T 3oja_B 192 PSLFHANVSYNLL---------STLAIPIAVEELDASHNSINV----------VRG--PVNVELTILKLQHNNLTD---- 246 (597)
T ss_dssp TTCSEEECCSSCC---------SEEECCTTCSEEECCSSCCCE----------EEC--SCCSCCCEEECCSSCCCC----
T ss_pred hhhhhhhcccCcc---------ccccCCchhheeeccCCcccc----------ccc--ccCCCCCEEECCCCCCCC----
Confidence 5565555544211 223455689999999887532 111 124689999999998876
Q ss_pred cccccccccccEEeEeCCCCCCCCCC-CCCCCCccceeccCCcCceEeCccccCCCCCCCCcccccCcccceeecccccc
Q 039167 765 KNWIMSLTNLRFLGLHEWRNCEHLPP-LGKLPSLESLYIAGMKSVKRVGNEFLGVESDMDGSSVIAFAKLKKLTFYIMEE 843 (923)
Q Consensus 765 p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~ 843 (923)
+.++..+++|+.|+|++|......|. ++.+++|+.|+|++|. +..++..+ ..+|+|+.|.+.++ .
T Consensus 247 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~------------~~l~~L~~L~Ls~N-~ 312 (597)
T 3oja_B 247 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYG------------QPIPTLKVLDLSHN-H 312 (597)
T ss_dssp CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSS------------SCCTTCCEEECCSS-C
T ss_pred ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCccc------------ccCCCCcEEECCCC-C
Confidence 56788999999999999976665554 8999999999999987 55554321 25889999988876 3
Q ss_pred ccccccccccccccccCcccceeeecccccCCCCCcCCCCCCCccEEEeccCCch
Q 039167 844 LEEWDLGTAIKGEIIIMPRLSSLTIWSCRKLKALPDHLLQKSTLQKLEIWGGCHI 898 (923)
Q Consensus 844 L~~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~~c~~ 898 (923)
+. .+|..+..+++|+.|++++|. +..+| +..+++|+.|++ ++||-
T Consensus 313 l~------~i~~~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l-~~N~~ 357 (597)
T 3oja_B 313 LL------HVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTL-SHNDW 357 (597)
T ss_dssp CC------CCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEEC-CSSCE
T ss_pred CC------ccCcccccCCCCCEEECCCCC-CCCcC--hhhcCCCCEEEe-eCCCC
Confidence 33 344556789999999999996 55565 667899999999 77663
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=8.8e-22 Score=241.45 Aligned_cols=278 Identities=18% Similarity=0.110 Sum_probs=178.1
Q ss_pred cccceEEEEEEecCCCCCccccccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccc-ccccc
Q 039167 505 AEKKILHLTLAIGCGPMPIYDNIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEV-PTNIE 583 (923)
Q Consensus 505 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~ 583 (923)
....++.+.+..+......+..+..+++|++|++++|.......+..|.++++|++|+|++|. +..+ |..++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-------l~~~~p~~~~ 94 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-------IYFLHPDAFQ 94 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-------CCEECTTSSC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-------CcccCHhHcc
Confidence 356788898888876544466788999999999999865443336668999999999999776 5544 77889
Q ss_pred CCCCCcEEeccCCCCcc-ccchh--hhCCCCCcEEecCCCcccccc--CccccCCCCCCEEeCCCCcccccCCcCCCCC-
Q 039167 584 KLLHLKYLNLANQMEIE-RLPET--LCELYNLEHLNVNCCVKLREL--PQGIGRLRKLMYLDNECTVSLRYLPVGIGKL- 657 (923)
Q Consensus 584 ~l~~L~~L~L~~~~~l~-~lp~~--i~~L~~L~~L~L~~~~~l~~l--p~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L- 657 (923)
++.+|++|+|++|. +. .+|.. ++++++|++|+|++|. +..+ |..+++|++|++|++++|......|..++.+
T Consensus 95 ~l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~ 172 (844)
T 3j0a_A 95 GLFHLFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172 (844)
T ss_dssp SCSSCCCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH
T ss_pred CCcccCEeeCcCCC-CCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHccccc
Confidence 99999999999998 54 45655 8899999999999987 5443 3568899999999998885444445555544
Q ss_pred -CCCCcCCceEecccCCcccccccccC------C----------------------------------------------
Q 039167 658 -IRLRRVKEFVVGGGYGRACSLGSLKK------L---------------------------------------------- 684 (923)
Q Consensus 658 -~~L~~L~~~~~~~~~~~~~~l~~L~~------L---------------------------------------------- 684 (923)
++|+.|++..+......+..+..+.. |
T Consensus 173 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l 252 (844)
T 3j0a_A 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252 (844)
T ss_dssp HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSS
T ss_pred CCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccccc
Confidence 55555554433322211111111100 0
Q ss_pred -------------CCCCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcE
Q 039167 685 -------------NLLRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKEL 751 (923)
Q Consensus 685 -------------~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L 751 (923)
.+|+.+.+....- .......+..+++|+.|+++.|.+.. .....+..+++|+.|
T Consensus 253 ~~~~~~~f~~l~~~~L~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~L~~n~i~~---------~~~~~~~~l~~L~~L 319 (844)
T 3j0a_A 253 KDPDQNTFAGLARSSVRHLDLSHGFV----FSLNSRVFETLKDLKVLNLAYNKINK---------IADEAFYGLDNLQVL 319 (844)
T ss_dssp TTGGGTTTTTTTTSCCCEEECTTCCC----CEECSCCSSSCCCCCEEEEESCCCCE---------ECTTTTTTCSSCCEE
T ss_pred CCCChhhhhccccCCccEEECCCCcc----cccChhhhhcCCCCCEEECCCCcCCC---------CChHHhcCCCCCCEE
Confidence 1111111111100 00111234556777777777766432 112345667788888
Q ss_pred EEeeecCCCCCcCcccccccccccEEeEeCCCCCCCCCC-CCCCCCccceeccCCc
Q 039167 752 WINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRNCEHLPP-LGKLPSLESLYIAGMK 806 (923)
Q Consensus 752 ~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~ 806 (923)
++++|.... ++|.++..+++|+.|+|++|......+. ++.+++|+.|++++|.
T Consensus 320 ~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 320 NLSYNLLGE--LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp EEESCCCSC--CCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred ECCCCCCCc--cCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence 888877665 5466777788888888887754332222 6777778888777765
No 21
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=2.3e-22 Score=238.43 Aligned_cols=119 Identities=24% Similarity=0.295 Sum_probs=85.8
Q ss_pred ccceEEEEEEecCCCCCccccccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCccccccccccc-ccccC
Q 039167 506 EKKILHLTLAIGCGPMPIYDNIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVP-TNIEK 584 (923)
Q Consensus 506 ~~~~~~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~ 584 (923)
...++++.+..+......+..+..+++|++|++++|.+.... |..|.++++|++|++++|. +..+| ..+++
T Consensus 55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~ 126 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS-PGSFSGLTSLENLVAVETK-------LASLESFPIGQ 126 (606)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCC-TTSSTTCTTCCEEECTTSC-------CCCSSSSCCTT
T ss_pred CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccC-hhhcCCcccCCEEEccCCc-------cccccccccCC
Confidence 356777777766653333456788888999999888876643 5568888899999998765 55555 56888
Q ss_pred CCCCcEEeccCCCCcc--ccchhhhCCCCCcEEecCCCcccccc-CccccCCC
Q 039167 585 LLHLKYLNLANQMEIE--RLPETLCELYNLEHLNVNCCVKLREL-PQGIGRLR 634 (923)
Q Consensus 585 l~~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~ 634 (923)
+.+|++|++++|. +. .+|..++++++|++|++++|. +..+ |..++.+.
T Consensus 127 l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~ 177 (606)
T 3vq2_A 127 LITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLR 177 (606)
T ss_dssp CTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHH
T ss_pred CCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhh
Confidence 8888888888887 55 478888888888888888886 4443 33344433
No 22
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=1.6e-21 Score=222.85 Aligned_cols=320 Identities=20% Similarity=0.249 Sum_probs=173.3
Q ss_pred ceEEEEEEecCCCCCccccccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCC
Q 039167 508 KILHLTLAIGCGPMPIYDNIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLH 587 (923)
Q Consensus 508 ~~~~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~ 587 (923)
.++.+.+..+.... .+.+..+++|++|++++|.+... +. +.++++|++|++++|. +..++. ++++++
T Consensus 47 ~l~~L~l~~~~i~~--l~~~~~l~~L~~L~Ls~n~l~~~--~~-~~~l~~L~~L~l~~n~-------l~~~~~-~~~l~~ 113 (466)
T 1o6v_A 47 QVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDI--TP-LKNLTKLVDILMNNNQ-------IADITP-LANLTN 113 (466)
T ss_dssp TCCEEECCSSCCCC--CTTGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSC-------CCCCGG-GTTCTT
T ss_pred cccEEecCCCCCcc--CcchhhhcCCCEEECCCCccCCc--hh-hhccccCCEEECCCCc-------cccChh-hcCCCC
Confidence 34555554443321 23355666666666666665443 22 5666666666666544 444444 666666
Q ss_pred CcEEeccCCCCccccchhhhCCCCCcEEecCCCccccccCccccCCCCCCEEeC---------------------CCCcc
Q 039167 588 LKYLNLANQMEIERLPETLCELYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDN---------------------ECTVS 646 (923)
Q Consensus 588 L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l---------------------~~~~~ 646 (923)
|++|++++|. +..+|. ++++++|++|++++|. +..+| .++.+++|++|++ ++| .
T Consensus 114 L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n-~ 188 (466)
T 1o6v_A 114 LTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN-K 188 (466)
T ss_dssp CCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEE-ECCCG-GGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS-C
T ss_pred CCEEECCCCC-CCCChH-HcCCCCCCEEECCCCc-cCCCh-hhccCCcccEeecCCcccCchhhccCCCCCEEECcCC-c
Confidence 6666666665 666655 6666666666666665 44444 2455555555554 444 2
Q ss_pred cccCCcCCCCCCCCCcCCceEecccCCcccccccccCCCCCCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCC
Q 039167 647 LRYLPVGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLNLLRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAG 726 (923)
Q Consensus 647 l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 726 (923)
+..++ .+..+++|+.|++..+.... +..+..+++|+.+.+.+..- ... ..+..+++|+.|++++|.+.
T Consensus 189 l~~~~-~l~~l~~L~~L~l~~n~l~~-----~~~~~~l~~L~~L~l~~n~l-~~~-----~~l~~l~~L~~L~l~~n~l~ 256 (466)
T 1o6v_A 189 VSDIS-VLAKLTNLESLIATNNQISD-----ITPLGILTNLDELSLNGNQL-KDI-----GTLASLTNLTDLDLANNQIS 256 (466)
T ss_dssp CCCCG-GGGGCTTCSEEECCSSCCCC-----CGGGGGCTTCCEEECCSSCC-CCC-----GGGGGCTTCSEEECCSSCCC
T ss_pred CCCCh-hhccCCCCCEEEecCCcccc-----cccccccCCCCEEECCCCCc-ccc-----hhhhcCCCCCEEECCCCccc
Confidence 22222 23344444444433322221 11123333344444333211 110 12344555666666555432
Q ss_pred CCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCcccccccccccEEeEeCCCCCCCCCCCCCCCCccceeccCCc
Q 039167 727 RRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRNCEHLPPLGKLPSLESLYIAGMK 806 (923)
Q Consensus 727 ~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~ 806 (923)
. ...+..+++|+.|++++|.... +++ +..+++|+.|++++|.. ..++.++.+++|+.|++++|.
T Consensus 257 ~-----------~~~~~~l~~L~~L~l~~n~l~~--~~~--~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 257 N-----------LAPLSGLTKLTELKLGANQISN--ISP--LAGLTALTNLELNENQL-EDISPISNLKNLTYLTLYFNN 320 (466)
T ss_dssp C-----------CGGGTTCTTCSEEECCSSCCCC--CGG--GTTCTTCSEEECCSSCC-SCCGGGGGCTTCSEEECCSSC
T ss_pred c-----------chhhhcCCCCCEEECCCCccCc--ccc--ccCCCccCeEEcCCCcc-cCchhhcCCCCCCEEECcCCc
Confidence 2 0114455666666666665554 422 55666666666666643 334446666667777776664
Q ss_pred CceEeCccccCCCCCCCCcccccCcccceeeccccccccccccccccccccccCcccceeeecccccCCCCCcCCCCCCC
Q 039167 807 SVKRVGNEFLGVESDMDGSSVIAFAKLKKLTFYIMEELEEWDLGTAIKGEIIIMPRLSSLTIWSCRKLKALPDHLLQKST 886 (923)
Q Consensus 807 ~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~s 886 (923)
+..++. ...+++|+.|.+.++ .+... ..+..+++|+.|++++|... .++. +..+++
T Consensus 321 -l~~~~~-------------~~~l~~L~~L~l~~n-~l~~~-------~~l~~l~~L~~L~l~~n~l~-~~~~-~~~l~~ 376 (466)
T 1o6v_A 321 -ISDISP-------------VSSLTKLQRLFFYNN-KVSDV-------SSLANLTNINWLSAGHNQIS-DLTP-LANLTR 376 (466)
T ss_dssp -CSCCGG-------------GGGCTTCCEEECCSS-CCCCC-------GGGTTCTTCCEEECCSSCCC-BCGG-GTTCTT
T ss_pred -CCCchh-------------hccCccCCEeECCCC-ccCCc-------hhhccCCCCCEEeCCCCccC-ccch-hhcCCC
Confidence 322211 235778888877766 34332 24567899999999998654 4443 778899
Q ss_pred ccEEEeccCCch
Q 039167 887 LQKLEIWGGCHI 898 (923)
Q Consensus 887 L~~L~l~~~c~~ 898 (923)
|+.|++ .+|+-
T Consensus 377 L~~L~l-~~n~~ 387 (466)
T 1o6v_A 377 ITQLGL-NDQAW 387 (466)
T ss_dssp CCEEEC-CCEEE
T ss_pred CCEEec-cCCcc
Confidence 999999 77753
No 23
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=2.4e-22 Score=236.64 Aligned_cols=145 Identities=18% Similarity=0.160 Sum_probs=107.5
Q ss_pred ccceEEEEEEecCCCCCccccccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCccccccccccc-ccccC
Q 039167 506 EKKILHLTLAIGCGPMPIYDNIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVP-TNIEK 584 (923)
Q Consensus 506 ~~~~~~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~ 584 (923)
+..++++.+..+.........+..+++|++|++++|.+..+. +..|.++++|++|++++|. +..+| ..+++
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~ 98 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNP-------IQSLALGAFSG 98 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCC-------CCEECTTTTTT
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccC-cccccCchhCCEEeCcCCc-------CCccCHhhhcC
Confidence 456788888777654333456788999999999999876543 5568889999999999765 55554 67888
Q ss_pred CCCCcEEeccCCCCccccch-hhhCCCCCcEEecCCCcccc--ccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCC
Q 039167 585 LLHLKYLNLANQMEIERLPE-TLCELYNLEHLNVNCCVKLR--ELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRL 660 (923)
Q Consensus 585 l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L 660 (923)
+.+|++|++++|. +..+|. .++++++|++|++++|. +. .+|..++++++|++|++++|......|..++.+++|
T Consensus 99 l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 99 LSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp CTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred ccccccccccccc-cccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 8889999998887 777765 58888889999998887 54 368888888889999888884333233444444444
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=1.2e-21 Score=229.63 Aligned_cols=141 Identities=18% Similarity=0.134 Sum_probs=79.1
Q ss_pred CCCCCCcEEEeeecCCCCCcCcccccccccccEEeEeCCCCCCCCC----CCCCCCCccceeccCCcCceE-eCccccCC
Q 039167 744 PPPNLKELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRNCEHLP----PLGKLPSLESLYIAGMKSVKR-VGNEFLGV 818 (923)
Q Consensus 744 ~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~----~l~~L~~L~~L~L~~~~~l~~-~~~~~~~~ 818 (923)
.+++|+.|++++|.... ..|.++..+++|+.|+|++|... .++ .++.+++|++|++++|. +.. ++...+..
T Consensus 351 ~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~ 426 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTD--SVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRTCAW 426 (562)
T ss_dssp SCCCCCEEECCSSCCCT--TTTTTCCSCSSCCEEECCSSCCC-BTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCCCCC
T ss_pred CCCCceEEECCCCcccc--chhhhhcccCCCCEEECCCCCcC-CcccchhhhcCCCCCCEEECCCCc-CCCccChhhhcC
Confidence 34555555555555443 22444555555555555555322 221 14555555555555554 222 32221110
Q ss_pred ----------CCCCCCcccccC-cccceeeccccccccccccccccccccccCcccceeeecccccCCCCCcC-CCCCCC
Q 039167 819 ----------ESDMDGSSVIAF-AKLKKLTFYIMEELEEWDLGTAIKGEIIIMPRLSSLTIWSCRKLKALPDH-LLQKST 886 (923)
Q Consensus 819 ----------~~~~~~~~~~~f-~~L~~L~l~~~~~L~~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~-l~~l~s 886 (923)
.+.+....+..+ ++|+.|.+.++ .++ .+|..+..+++|+.|++++|. +..+|.. +..+++
T Consensus 427 l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~------~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~ 498 (562)
T 3a79_B 427 AESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIM------SIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTS 498 (562)
T ss_dssp CTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCC------CCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTCTT
T ss_pred cccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCc------ccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcCCC
Confidence 011111122234 57888877765 443 344455689999999999995 6688887 888999
Q ss_pred ccEEEeccCCc
Q 039167 887 LQKLEIWGGCH 897 (923)
Q Consensus 887 L~~L~l~~~c~ 897 (923)
|+.|++ +++|
T Consensus 499 L~~L~l-~~N~ 508 (562)
T 3a79_B 499 LQYIWL-HDNP 508 (562)
T ss_dssp CCCEEC-CSCC
T ss_pred CCEEEe-cCCC
Confidence 999999 6544
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=4.5e-22 Score=231.20 Aligned_cols=336 Identities=16% Similarity=0.151 Sum_probs=207.0
Q ss_pred CCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccc-cccccCCCCCcEEeccCCCCccccchhhhCC
Q 039167 531 RGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEV-PTNIEKLLHLKYLNLANQMEIERLPETLCEL 609 (923)
Q Consensus 531 ~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L 609 (923)
++++.|++++|.+.... +..|.++++|++|++++|. +..+ |..++++++|++|+|++|. +..+|.. .+
T Consensus 21 ~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l 89 (520)
T 2z7x_B 21 QKTTILNISQNYISELW-TSDILSLSKLRILIISHNR-------IQYLDISVFKFNQELEYLDLSHNK-LVKISCH--PT 89 (520)
T ss_dssp TTCSEEECCSSCCCCCC-HHHHTTCTTCCEEECCSSC-------CCEEEGGGGTTCTTCCEEECCSSC-CCEEECC--CC
T ss_pred ccccEEECCCCcccccC-hhhccccccccEEecCCCc-------cCCcChHHhhcccCCCEEecCCCc-eeecCcc--cc
Confidence 89999999999987643 5679999999999999876 5555 6789999999999999998 8899986 89
Q ss_pred CCCcEEecCCCccccc--cCccccCCCCCCEEeCCCCcccccCCcCCCCCCCC--CcCCceEecc--cCCccccccccc-
Q 039167 610 YNLEHLNVNCCVKLRE--LPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRL--RRVKEFVVGG--GYGRACSLGSLK- 682 (923)
Q Consensus 610 ~~L~~L~L~~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L--~~L~~~~~~~--~~~~~~~l~~L~- 682 (923)
++|++|++++|. +.. +|..++++++|++|++++|. +.. ..++.+++| +.|++..+.. ....+..+..+.
T Consensus 90 ~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~ 165 (520)
T 2z7x_B 90 VNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT 165 (520)
T ss_dssp CCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCE
T ss_pred CCccEEeccCCc-cccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeeccccccccccccccccccc
Confidence 999999999998 554 67899999999999999984 333 346677777 8888777654 222222233222
Q ss_pred ----------------------CCCCCCCceEeCCCC---CCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCcc-----
Q 039167 683 ----------------------KLNLLRDCRIRGLGD---VSDVDEARRAELEKKKNLFELKLHFDQAGRRENEE----- 732 (923)
Q Consensus 683 ----------------------~L~~L~~l~i~~~~~---~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~----- 732 (923)
.++.|+.+.+..... ........ ..+..+++|+.|+++.+.+.......
T Consensus 166 ~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~ 244 (520)
T 2z7x_B 166 ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL-AKLQTNPKLSNLTLNNIETTWNSFIRILQLV 244 (520)
T ss_dssp EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH-HGGGGCTTCCEEEEEEEEEEHHHHHHHHHHH
T ss_pred ceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecch-hhhccccchhhccccccccCHHHHHHHHHHh
Confidence 234444444433210 00011111 23444555555555443321000000
Q ss_pred -------------chHHHHhhcC-----CCCCC--------------------------CCcEEEeeecCCCCCcCcccc
Q 039167 733 -------------DEDERLLEAL-----GPPPN--------------------------LKELWINKYRGKRNVVPKNWI 768 (923)
Q Consensus 733 -------------~~~~~~l~~l-----~~~~~--------------------------L~~L~l~~~~~~~~~~~p~~~ 768 (923)
.....++..+ ..+++ |+.|+++++.... + + +.
T Consensus 245 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~--~-~-~~ 320 (520)
T 2z7x_B 245 WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH--M-L-CP 320 (520)
T ss_dssp HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCC--C-C-CC
T ss_pred hhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccc--c-c-ch
Confidence 0000011111 22223 4444444433222 1 0 12
Q ss_pred cccccccEEeEeCCCCCCCCCC-CCCCCCccceeccCCcCceEeCc---cccC---------CCCCCCC-c---ccccCc
Q 039167 769 MSLTNLRFLGLHEWRNCEHLPP-LGKLPSLESLYIAGMKSVKRVGN---EFLG---------VESDMDG-S---SVIAFA 831 (923)
Q Consensus 769 ~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~~l~~~~~---~~~~---------~~~~~~~-~---~~~~f~ 831 (923)
..+++|+.|++++|.....+|. ++.+++|+.|++++|. +..++. .+.. ..+.+.. . ....++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence 5788999999999987765554 8999999999999987 443221 1110 0111111 0 012234
Q ss_pred ccceeeccccccccccccccccccccccCcccceeeecccccCCCCCcCCCCCCCccEEEeccCCc
Q 039167 832 KLKKLTFYIMEELEEWDLGTAIKGEIIIMPRLSSLTIWSCRKLKALPDHLLQKSTLQKLEIWGGCH 897 (923)
Q Consensus 832 ~L~~L~l~~~~~L~~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~~c~ 897 (923)
+|+.|.+.++ .+.+..|..+. ++|+.|++++|. +..+|..+..+++|++|++ ++|.
T Consensus 400 ~L~~L~Ls~N------~l~~~~~~~l~--~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L-~~N~ 455 (520)
T 2z7x_B 400 SLLSLNMSSN------ILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVVKLEALQELNV-ASNQ 455 (520)
T ss_dssp TCCEEECCSS------CCCGGGGGSCC--TTCCEEECCSSC-CCCCCGGGGGCTTCCEEEC-CSSC
T ss_pred cCCEEECcCC------CCCcchhhhhc--ccCCEEECCCCc-ccccchhhhcCCCCCEEEC-CCCc
Confidence 5555544433 22222222221 789999999984 6689988888999999999 7764
No 26
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=5.8e-22 Score=235.04 Aligned_cols=276 Identities=18% Similarity=0.176 Sum_probs=130.3
Q ss_pred CcEEeccCCCCccccch-hhhCCCCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCce
Q 039167 588 LKYLNLANQMEIERLPE-TLCELYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEF 666 (923)
Q Consensus 588 L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~ 666 (923)
|++|++++|. +..+|. .++.+++|++|++++|. +..+|..+..+++|++|++++|......|..++.+++|++|++.
T Consensus 256 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 256 VESINLQKHY-FFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEECTTCC-CSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred eeEEEeecCc-cCccCHHHhccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 3444444443 333332 24455555555555554 44555555555555555555553222223344555555555444
Q ss_pred EecccCCcccccccccCCCCCCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCC
Q 039167 667 VVGGGYGRACSLGSLKKLNLLRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPP 746 (923)
Q Consensus 667 ~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~ 746 (923)
.+..... .....+..+++|+.+.+....-.. . ......+..+++|+.|++++|.+.. ..+..+..++
T Consensus 334 ~n~~~~~--~~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~~~~~l~~L~~L~l~~n~l~~---------~~~~~~~~l~ 400 (606)
T 3t6q_A 334 GNTKRLE--LGTGCLENLENLRELDLSHDDIET-S-DCCNLQLRNLSHLQSLNLSYNEPLS---------LKTEAFKECP 400 (606)
T ss_dssp SCSSCCB--CCSSTTTTCTTCCEEECCSSCCCE-E-EESTTTTTTCTTCCEEECCSCSCEE---------ECTTTTTTCT
T ss_pred CCCcccc--cchhhhhccCcCCEEECCCCcccc-c-cCcchhcccCCCCCEEECCCCcCCc---------CCHHHhcCCc
Confidence 3322210 001113333344444433321100 0 0001234445555666655554211 1123344556
Q ss_pred CCCcEEEeeecCCCCCcCcccccccccccEEeEeCCCCCCCCCC-CCCCCCccceeccCCcCce-EeCccccCCCCCCCC
Q 039167 747 NLKELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRNCEHLPP-LGKLPSLESLYIAGMKSVK-RVGNEFLGVESDMDG 824 (923)
Q Consensus 747 ~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~~l~-~~~~~~~~~~~~~~~ 824 (923)
+|+.|++++|..... .++.++..+++|+.|++++|......|. ++.+++|++|++++|.-.. .++. .
T Consensus 401 ~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----------~ 469 (606)
T 3t6q_A 401 QLELLDLAFTRLKVK-DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK----------T 469 (606)
T ss_dssp TCSEEECTTCCEECC-TTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECS----------S
T ss_pred cCCeEECCCCcCCCc-ccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccccc----------c
Confidence 666666665554431 1233455666666666666654433333 5566666666666654111 0000 0
Q ss_pred cccccCcccceeeccccccccccccccccccccccCcccceeeecccccCCCCCcCCCCCCCccEEEeccCCc
Q 039167 825 SSVIAFAKLKKLTFYIMEELEEWDLGTAIKGEIIIMPRLSSLTIWSCRKLKALPDHLLQKSTLQKLEIWGGCH 897 (923)
Q Consensus 825 ~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~~c~ 897 (923)
.....+++|+.|.+.++ .+.+..|..+..+++|+.|++++|......|..+.++++| .|++ ++|.
T Consensus 470 ~~~~~l~~L~~L~Ls~n------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L-~~N~ 534 (606)
T 3t6q_A 470 NSLQTLGRLEILVLSFC------DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNL-ASNH 534 (606)
T ss_dssp CGGGGCTTCCEEECTTS------CCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEEC-CSSC
T ss_pred hhhccCCCccEEECCCC------ccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEEC-cCCc
Confidence 01224566666665544 2333334556677777777777776555556667777777 7777 5553
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=2.5e-21 Score=222.30 Aligned_cols=295 Identities=16% Similarity=0.114 Sum_probs=178.2
Q ss_pred CCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccc-cccccCCCCCcEEeccCCCCccccchh-hhC
Q 039167 531 RGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEV-PTNIEKLLHLKYLNLANQMEIERLPET-LCE 608 (923)
Q Consensus 531 ~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~-i~~ 608 (923)
++++.|++++|.+.... +..|.++++|++|+|++|. +..+ |..++++++|++|+|++|. +..+|.. +++
T Consensus 32 ~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~-------i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 102 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLN-QDEFASFPHLEELELNENI-------VSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTG 102 (477)
T ss_dssp TTCSEEECCSSCCCEEC-TTTTTTCTTCCEEECTTSC-------CCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTT
T ss_pred CCCcEEECCCCccceEC-HhHccCCCCCCEEECCCCc-------cCEeChhhhhCCccCCEEECCCCc-CCccCcccccC
Confidence 57888888888876643 4557888889999998765 5555 6678888889999998888 7777754 688
Q ss_pred CCCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEecccCCcccccccccCCCCCC
Q 039167 609 LYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLNLLR 688 (923)
Q Consensus 609 L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~ 688 (923)
+++|++|+|++|......|..+..+++|++|++++|......|..++.+++|++|++..+......
T Consensus 103 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------------- 168 (477)
T 2id5_A 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP-------------- 168 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC--------------
T ss_pred CCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC--------------
Confidence 888999999888733445667888888999988888544444566777778877766544322100
Q ss_pred CceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCcccc
Q 039167 689 DCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKNWI 768 (923)
Q Consensus 689 ~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~ 768 (923)
...+..+++|+.|+++.|.+.. .....+..+++|+.|+++++..... + |...
T Consensus 169 -----------------~~~l~~l~~L~~L~l~~n~i~~---------~~~~~~~~l~~L~~L~l~~~~~~~~-~-~~~~ 220 (477)
T 2id5_A 169 -----------------TEALSHLHGLIVLRLRHLNINA---------IRDYSFKRLYRLKVLEISHWPYLDT-M-TPNC 220 (477)
T ss_dssp -----------------HHHHTTCTTCCEEEEESCCCCE---------ECTTCSCSCTTCCEEEEECCTTCCE-E-CTTT
T ss_pred -----------------hhHhcccCCCcEEeCCCCcCcE---------eChhhcccCcccceeeCCCCccccc-c-Cccc
Confidence 1223345556666666554321 1112344556666666666543321 2 2222
Q ss_pred cccccccEEeEeCCCCCCCCCC--CCCCCCccceeccCCcCceEeCccccCCCCCCCCcccccCcccceeeccccccccc
Q 039167 769 MSLTNLRFLGLHEWRNCEHLPP--LGKLPSLESLYIAGMKSVKRVGNEFLGVESDMDGSSVIAFAKLKKLTFYIMEELEE 846 (923)
Q Consensus 769 ~~l~~L~~L~L~~~~~~~~l~~--l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~ 846 (923)
....+|+.|+|++|... .+|. +..+++|+.|+|++|. +..++...+ ..+++|+.|.+.++
T Consensus 221 ~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-----------~~l~~L~~L~L~~n----- 282 (477)
T 2id5_A 221 LYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNP-ISTIEGSML-----------HELLRLQEIQLVGG----- 282 (477)
T ss_dssp TTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSC-CCEECTTSC-----------TTCTTCCEEECCSS-----
T ss_pred ccCccccEEECcCCccc-ccCHHHhcCccccCeeECCCCc-CCccChhhc-----------cccccCCEEECCCC-----
Confidence 23346666666666332 3442 5566666666666665 444433211 13455565555433
Q ss_pred cccccccccccccCcccceeeecccccCCCCCc-CCCCCCCccEEEeccCCc
Q 039167 847 WDLGTAIKGEIIIMPRLSSLTIWSCRKLKALPD-HLLQKSTLQKLEIWGGCH 897 (923)
Q Consensus 847 ~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~lp~-~l~~l~sL~~L~l~~~c~ 897 (923)
.+.+..+..+..+++|+.|+|++|. +..+|. .+..+++|+.|++ .++|
T Consensus 283 -~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l-~~N~ 331 (477)
T 2id5_A 283 -QLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLIL-DSNP 331 (477)
T ss_dssp -CCSEECTTTBTTCTTCCEEECCSSC-CSCCCGGGBSCGGGCCEEEC-CSSC
T ss_pred -ccceECHHHhcCcccCCEEECCCCc-CceeCHhHcCCCcccCEEEc-cCCC
Confidence 2222333445566677777777663 444443 3455666777776 4433
No 28
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=4.9e-21 Score=210.01 Aligned_cols=303 Identities=18% Similarity=0.200 Sum_probs=230.1
Q ss_pred ccceEEEEEEecCCCCCccccccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCC
Q 039167 506 EKKILHLTLAIGCGPMPIYDNIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKL 585 (923)
Q Consensus 506 ~~~~~~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l 585 (923)
...++++.+..+.... ...+..+++|++|++++|.+... +. +..+++|++|++++|. +..+| .+.++
T Consensus 43 l~~L~~L~l~~~~i~~--~~~~~~~~~L~~L~l~~n~i~~~--~~-~~~l~~L~~L~L~~n~-------i~~~~-~~~~l 109 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGNQITDI--SP-LSNLVKLTNLYIGTNK-------ITDIS-ALQNL 109 (347)
T ss_dssp HTTCSEEECCSSCCCC--CTTGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSC-------CCCCG-GGTTC
T ss_pred cccccEEEEeCCcccc--chhhhhcCCccEEEccCCccccc--hh-hhcCCcCCEEEccCCc-------ccCch-HHcCC
Confidence 4467788887766532 34578899999999999987764 33 8899999999999776 55665 58999
Q ss_pred CCCcEEeccCCCCccccchhhhCCCCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCc
Q 039167 586 LHLKYLNLANQMEIERLPETLCELYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKE 665 (923)
Q Consensus 586 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~ 665 (923)
++|++|++++|. +..+|. +..+++|++|++++|..+..+| .+..+++|++|++++| .+..++. ++.+++|++|++
T Consensus 110 ~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~-~~~~~~~-~~~l~~L~~L~l 184 (347)
T 4fmz_A 110 TNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTES-KVKDVTP-IANLTDLYSLSL 184 (347)
T ss_dssp TTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCSEEEC
T ss_pred CcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCC-CcCCchh-hccCCCCCEEEc
Confidence 999999999998 888887 9999999999999997566655 4999999999999998 4555554 788899999887
Q ss_pred eEecccCCcccccccccCCCCCCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCC
Q 039167 666 FVVGGGYGRACSLGSLKKLNLLRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPP 745 (923)
Q Consensus 666 ~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~ 745 (923)
..+.... +..+..+++|+.+.+....-.. . ..+..+++|+.|++++|.+.. ...+..+
T Consensus 185 ~~n~l~~-----~~~~~~l~~L~~L~l~~n~l~~-~-----~~~~~~~~L~~L~l~~n~l~~-----------~~~~~~l 242 (347)
T 4fmz_A 185 NYNQIED-----ISPLASLTSLHYFTAYVNQITD-I-----TPVANMTRLNSLKIGNNKITD-----------LSPLANL 242 (347)
T ss_dssp TTSCCCC-----CGGGGGCTTCCEEECCSSCCCC-C-----GGGGGCTTCCEEECCSSCCCC-----------CGGGTTC
T ss_pred cCCcccc-----cccccCCCccceeecccCCCCC-C-----chhhcCCcCCEEEccCCccCC-----------CcchhcC
Confidence 6655432 3336667777777766543221 1 116678999999999988643 1126788
Q ss_pred CCCCcEEEeeecCCCCCcCcccccccccccEEeEeCCCCCCCCCCCCCCCCccceeccCCcCceEeCccccCCCCCCCCc
Q 039167 746 PNLKELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRNCEHLPPLGKLPSLESLYIAGMKSVKRVGNEFLGVESDMDGS 825 (923)
Q Consensus 746 ~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~ 825 (923)
++|+.|++++|.... + + .+..+++|+.|++++|.. ..++.+..+++|+.|++++|. +...+...
T Consensus 243 ~~L~~L~l~~n~l~~--~-~-~~~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~---------- 306 (347)
T 4fmz_A 243 SQLTWLEIGTNQISD--I-N-AVKDLTKLKMLNVGSNQI-SDISVLNNLSQLNSLFLNNNQ-LGNEDMEV---------- 306 (347)
T ss_dssp TTCCEEECCSSCCCC--C-G-GGTTCTTCCEEECCSSCC-CCCGGGGGCTTCSEEECCSSC-CCGGGHHH----------
T ss_pred CCCCEEECCCCccCC--C-h-hHhcCCCcCEEEccCCcc-CCChhhcCCCCCCEEECcCCc-CCCcChhH----------
Confidence 999999999998776 4 3 577899999999999954 446778999999999999987 43332221
Q ss_pred ccccCcccceeeccccccccccccccccccccccCcccceeeeccccc
Q 039167 826 SVIAFAKLKKLTFYIMEELEEWDLGTAIKGEIIIMPRLSSLTIWSCRK 873 (923)
Q Consensus 826 ~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~lp~L~~L~l~~c~~ 873 (923)
...+++|+.|.+.+++ +... .| +..+++|+.|++++|+.
T Consensus 307 -l~~l~~L~~L~L~~n~-l~~~-----~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 307 -IGGLTNLTTLFLSQNH-ITDI-----RP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp -HHTCTTCSEEECCSSS-CCCC-----GG--GGGCTTCSEESSSCC--
T ss_pred -hhccccCCEEEccCCc-cccc-----cC--hhhhhccceeehhhhcc
Confidence 1257899999888763 4332 22 56899999999999963
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.86 E-value=5.4e-21 Score=224.04 Aligned_cols=337 Identities=16% Similarity=0.146 Sum_probs=191.7
Q ss_pred CCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccc-cccccCCCCCcEEeccCCCCccccchhhhCC
Q 039167 531 RGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEV-PTNIEKLLHLKYLNLANQMEIERLPETLCEL 609 (923)
Q Consensus 531 ~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L 609 (923)
++++.|++++|.+.... +..|.++++|++|++++|. +..+ |..++++++|++|+|++|. +..+|.. .+
T Consensus 52 ~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~-------l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l 120 (562)
T 3a79_B 52 PRTKALSLSQNSISELR-MPDISFLSELRVLRLSHNR-------IRSLDFHVFLFNQDLEYLDVSHNR-LQNISCC--PM 120 (562)
T ss_dssp TTCCEEECCSSCCCCCC-GGGTTTCTTCCEEECCSCC-------CCEECTTTTTTCTTCCEEECTTSC-CCEECSC--CC
T ss_pred CCcCEEECCCCCccccC-hhhhccCCCccEEECCCCC-------CCcCCHHHhCCCCCCCEEECCCCc-CCccCcc--cc
Confidence 67888888888766543 4457788888888888665 5555 5667788888888888887 7778775 78
Q ss_pred CCCcEEecCCCcccccc--CccccCCCCCCEEeCCCCcccccCCcCCCCCCCC--CcCCceEecc--cCCccccccccc-
Q 039167 610 YNLEHLNVNCCVKLREL--PQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRL--RRVKEFVVGG--GYGRACSLGSLK- 682 (923)
Q Consensus 610 ~~L~~L~L~~~~~l~~l--p~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L--~~L~~~~~~~--~~~~~~~l~~L~- 682 (923)
++|++|++++|. +..+ |..++++++|++|++++|. +.. ..++.+++| ++|++..+.. ....+..+..+.
T Consensus 121 ~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~ 196 (562)
T 3a79_B 121 ASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT 196 (562)
T ss_dssp TTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCE
T ss_pred ccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCc-ccc--CchhhhhhceeeEEEeecccccccccCcccccccCc
Confidence 888888888876 5554 4678888888888888773 322 234455555 6666655443 221122222211
Q ss_pred ----------------------CCCCCCCceEeCCCCCCChhhhHHhhcCC---------------------------CC
Q 039167 683 ----------------------KLNLLRDCRIRGLGDVSDVDEARRAELEK---------------------------KK 713 (923)
Q Consensus 683 ----------------------~L~~L~~l~i~~~~~~~~~~~~~~~~l~~---------------------------~~ 713 (923)
.+++|+.+.+................+.. ..
T Consensus 197 ~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~ 276 (562)
T 3a79_B 197 TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPR 276 (562)
T ss_dssp EEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTS
T ss_pred ceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcc
Confidence 22233333333211000000000011112 23
Q ss_pred CCCcEEEEEcCCCCCCCccc----------------------hHHHHhhcCCCCCCCCcEEEeeecCCCCCcCccccccc
Q 039167 714 NLFELKLHFDQAGRRENEED----------------------EDERLLEALGPPPNLKELWINKYRGKRNVVPKNWIMSL 771 (923)
Q Consensus 714 ~L~~L~l~~~~~~~~~~~~~----------------------~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l 771 (923)
+|+.|+++.|.+........ ........+.+..+|+.|+++++.... + .....+
T Consensus 277 ~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~--~--~~~~~l 352 (562)
T 3a79_B 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIH--M--VCPPSP 352 (562)
T ss_dssp SEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCC--C--CCCSSC
T ss_pred cccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccc--c--cCccCC
Confidence 56666666655331100000 000000011112456666766665433 1 112578
Q ss_pred ccccEEeEeCCCCCCCCCC-CCCCCCccceeccCCcCceEeCc---cccCC---------CCCCCC----cccccCcccc
Q 039167 772 TNLRFLGLHEWRNCEHLPP-LGKLPSLESLYIAGMKSVKRVGN---EFLGV---------ESDMDG----SSVIAFAKLK 834 (923)
Q Consensus 772 ~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~~l~~~~~---~~~~~---------~~~~~~----~~~~~f~~L~ 834 (923)
++|+.|++++|.....+|. ++.+++|+.|++++|. ++.++. .+... .+.+.. .....+++|+
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~ 431 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred CCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence 9999999999987765554 8999999999999986 554432 11100 011111 1112334555
Q ss_pred eeeccccccccccccccccccccccCcccceeeecccccCCCCCcCCCCCCCccEEEeccCCc
Q 039167 835 KLTFYIMEELEEWDLGTAIKGEIIIMPRLSSLTIWSCRKLKALPDHLLQKSTLQKLEIWGGCH 897 (923)
Q Consensus 835 ~L~l~~~~~L~~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~~c~ 897 (923)
.|.+.++ .+.+..+..+. ++|+.|++++| .+..+|..+.++++|++|++ ++|.
T Consensus 432 ~L~l~~n------~l~~~~~~~l~--~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L-~~N~ 484 (562)
T 3a79_B 432 VLNLSSN------MLTGSVFRCLP--PKVKVLDLHNN-RIMSIPKDVTHLQALQELNV-ASNQ 484 (562)
T ss_dssp EEECCSS------CCCGGGGSSCC--TTCSEEECCSS-CCCCCCTTTTSSCCCSEEEC-CSSC
T ss_pred EEECCCC------CCCcchhhhhc--CcCCEEECCCC-cCcccChhhcCCCCCCEEEC-CCCC
Confidence 5544433 22233222221 69999999999 57789988889999999999 6664
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=1.5e-20 Score=212.87 Aligned_cols=308 Identities=18% Similarity=0.164 Sum_probs=146.4
Q ss_pred cccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchh
Q 039167 526 NIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPET 605 (923)
Q Consensus 526 ~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~ 605 (923)
.+..+++|++|++++|.+... | .+..+++|++|++++|. +..+| ++.+++|++|++++|. +..+|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~--~-~l~~l~~L~~L~Ls~n~-------l~~~~--~~~l~~L~~L~Ls~N~-l~~~~-- 101 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM--T-GIEKLTGLTKLICTSNN-------ITTLD--LSQNTNLTYLACDSNK-LTNLD-- 101 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC--T-TGGGCTTCSEEECCSSC-------CSCCC--CTTCTTCSEEECCSSC-CSCCC--
T ss_pred ChhHcCCCCEEEccCCCcccC--h-hhcccCCCCEEEccCCc-------CCeEc--cccCCCCCEEECcCCC-Cceee--
Confidence 344556666666666555442 2 25556666666666544 44443 5556666666666665 55554
Q ss_pred hhCCCCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEecccCCcccccccccCCC
Q 039167 606 LCELYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLN 685 (923)
Q Consensus 606 i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~ 685 (923)
++++++|++|++++|. +..+| ++.+++|++|++++| .+..+| ++.+++|+.|++..+.... .+ .+..++
T Consensus 102 ~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N-~l~~l~--l~~l~~L~~L~l~~n~~~~----~~-~~~~l~ 170 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARN-TLTEID--VSHNTQLTELDCHLNKKIT----KL-DVTPQT 170 (457)
T ss_dssp CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTS-CCSCCC--CTTCTTCCEEECTTCSCCC----CC-CCTTCT
T ss_pred cCCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCC-ccceec--cccCCcCCEEECCCCCccc----cc-ccccCC
Confidence 5566666666666654 44454 556666666666655 333333 4555555555544332211 11 233344
Q ss_pred CCCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCc
Q 039167 686 LLRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPK 765 (923)
Q Consensus 686 ~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p 765 (923)
+|+.+.+....- ... .+..+++|+.|++++|.+... .+..+++|+.|++++|.... + |
T Consensus 171 ~L~~L~ls~n~l-~~l------~l~~l~~L~~L~l~~N~l~~~------------~l~~l~~L~~L~Ls~N~l~~--i-p 228 (457)
T 3bz5_A 171 QLTTLDCSFNKI-TEL------DVSQNKLLNRLNCDTNNITKL------------DLNQNIQLTFLDCSSNKLTE--I-D 228 (457)
T ss_dssp TCCEEECCSSCC-CCC------CCTTCTTCCEEECCSSCCSCC------------CCTTCTTCSEEECCSSCCSC--C-C
T ss_pred cCCEEECCCCcc-cee------ccccCCCCCEEECcCCcCCee------------ccccCCCCCEEECcCCcccc--c-C
Confidence 444444433211 110 144555666666666654320 24455666666666666555 4 3
Q ss_pred ccccccccccEEeEeCCCCCCCCCCCCCCCCccceeccCCcCceEeCccccCCCCCCCCcccccCcccceeecccccccc
Q 039167 766 NWIMSLTNLRFLGLHEWRNCEHLPPLGKLPSLESLYIAGMKSVKRVGNEFLGVESDMDGSSVIAFAKLKKLTFYIMEELE 845 (923)
Q Consensus 766 ~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~ 845 (923)
+..+++|+.|++++|.... +| .+.+++|+.|+++++. ++.+.-..-.. ........+++|+.|.+.+++.+.
T Consensus 229 --~~~l~~L~~L~l~~N~l~~-~~-~~~l~~L~~L~l~~n~-L~~L~l~~n~~---~~~~~~~~l~~L~~L~Ls~n~~l~ 300 (457)
T 3bz5_A 229 --VTPLTQLTYFDCSVNPLTE-LD-VSTLSKLTTLHCIQTD-LLEIDLTHNTQ---LIYFQAEGCRKIKELDVTHNTQLY 300 (457)
T ss_dssp --CTTCTTCSEEECCSSCCSC-CC-CTTCTTCCEEECTTCC-CSCCCCTTCTT---CCEEECTTCTTCCCCCCTTCTTCC
T ss_pred --ccccCCCCEEEeeCCcCCC-cC-HHHCCCCCEEeccCCC-CCEEECCCCcc---CCcccccccccCCEEECCCCcccc
Confidence 4456666666666664332 22 3334444433333222 11111000000 000001245566666666554433
Q ss_pred ccccccc--cccccccCcccceeeecccccCCCCCcCCCCCCCccEEEe
Q 039167 846 EWDLGTA--IKGEIIIMPRLSSLTIWSCRKLKALPDHLLQKSTLQKLEI 892 (923)
Q Consensus 846 ~~~~~~~--~~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l 892 (923)
....... -.-.+..+++|+.|++++|. ++.+| +.++++|+.|++
T Consensus 301 ~l~~~~~~L~~L~l~~~~~L~~L~L~~N~-l~~l~--l~~l~~L~~L~l 346 (457)
T 3bz5_A 301 LLDCQAAGITELDLSQNPKLVYLYLNNTE-LTELD--VSHNTKLKSLSC 346 (457)
T ss_dssp EEECTTCCCSCCCCTTCTTCCEEECTTCC-CSCCC--CTTCTTCSEEEC
T ss_pred eeccCCCcceEechhhcccCCEEECCCCc-ccccc--cccCCcCcEEEC
Confidence 3221000 00013345666666666663 44443 556666666666
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.86 E-value=5.7e-21 Score=218.19 Aligned_cols=312 Identities=21% Similarity=0.283 Sum_probs=200.4
Q ss_pred cccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchhhh
Q 039167 528 EALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPETLC 607 (923)
Q Consensus 528 ~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~ 607 (923)
..++++++|.+.++.+.. ++. +..+++|++|++++|. +..+|. ++++++|++|++++|. +..+|. ++
T Consensus 43 ~~l~~l~~L~l~~~~i~~--l~~-~~~l~~L~~L~Ls~n~-------l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~ 109 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKS--IDG-VEYLNNLTQINFSNNQ-------LTDITP-LKNLTKLVDILMNNNQ-IADITP-LA 109 (466)
T ss_dssp HHHHTCCEEECCSSCCCC--CTT-GGGCTTCCEEECCSSC-------CCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GT
T ss_pred hHhccccEEecCCCCCcc--Ccc-hhhhcCCCEEECCCCc-------cCCchh-hhccccCCEEECCCCc-cccChh-hc
Confidence 457899999999988765 344 7889999999999776 677776 9999999999999998 888887 99
Q ss_pred CCCCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEecccCCcccccccccCCCCC
Q 039167 608 ELYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLNLL 687 (923)
Q Consensus 608 ~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L 687 (923)
++++|++|++++|. +..+|. +.++++|++|++++| .+..+| .++.+++|+.|.+.. ... .+..+..+++|
T Consensus 110 ~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~l~~-~~~-----~~~~~~~l~~L 179 (466)
T 1o6v_A 110 NLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSN-TISDIS-ALSGLTSLQQLSFGN-QVT-----DLKPLANLTTL 179 (466)
T ss_dssp TCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEE-EECCCG-GGTTCTTCSEEEEEE-SCC-----CCGGGTTCTTC
T ss_pred CCCCCCEEECCCCC-CCCChH-HcCCCCCCEEECCCC-ccCCCh-hhccCCcccEeecCC-ccc-----CchhhccCCCC
Confidence 99999999999997 888876 899999999999998 455665 478888888887642 111 22335566666
Q ss_pred CCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCccc
Q 039167 688 RDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKNW 767 (923)
Q Consensus 688 ~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~ 767 (923)
+.+.+....- ... ..+..+++|+.|++++|.+.... .+..+++|+.|++++|.... + + .
T Consensus 180 ~~L~l~~n~l-~~~-----~~l~~l~~L~~L~l~~n~l~~~~-----------~~~~l~~L~~L~l~~n~l~~--~-~-~ 238 (466)
T 1o6v_A 180 ERLDISSNKV-SDI-----SVLAKLTNLESLIATNNQISDIT-----------PLGILTNLDELSLNGNQLKD--I-G-T 238 (466)
T ss_dssp CEEECCSSCC-CCC-----GGGGGCTTCSEEECCSSCCCCCG-----------GGGGCTTCCEEECCSSCCCC--C-G-G
T ss_pred CEEECcCCcC-CCC-----hhhccCCCCCEEEecCCcccccc-----------cccccCCCCEEECCCCCccc--c-h-h
Confidence 6666655331 111 22455667777777766543210 12334555555555555443 2 2 3
Q ss_pred ccccccccEEeEeCCCCCCCCCCCCCCCCccceeccCCcCceEeCccccCC---------CCCCCC-cccccCcccceee
Q 039167 768 IMSLTNLRFLGLHEWRNCEHLPPLGKLPSLESLYIAGMKSVKRVGNEFLGV---------ESDMDG-SSVIAFAKLKKLT 837 (923)
Q Consensus 768 ~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~~~~~~~---------~~~~~~-~~~~~f~~L~~L~ 837 (923)
+..+++|+.|++++|... .++.++.+++|+.|++++|. +..++. +... .+.+.. .....+++|+.|.
T Consensus 239 l~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 315 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQIS-NLAPLSGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLT 315 (466)
T ss_dssp GGGCTTCSEEECCSSCCC-CCGGGTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEE
T ss_pred hhcCCCCCEEECCCCccc-cchhhhcCCCCCEEECCCCc-cCcccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEE
Confidence 445555555555555332 22224455555555555543 222211 0000 000000 0123566777776
Q ss_pred ccccccccccccccccccccccCcccceeeecccccCCCCCcCCCCCCCccEEEeccCCc
Q 039167 838 FYIMEELEEWDLGTAIKGEIIIMPRLSSLTIWSCRKLKALPDHLLQKSTLQKLEIWGGCH 897 (923)
Q Consensus 838 l~~~~~L~~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~~c~ 897 (923)
+.++ .+.. ..| +..+++|+.|++++|. +..++ .+.++++|+.|++ ++|+
T Consensus 316 L~~n-~l~~-----~~~--~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l-~~n~ 364 (466)
T 1o6v_A 316 LYFN-NISD-----ISP--VSSLTKLQRLFFYNNK-VSDVS-SLANLTNINWLSA-GHNQ 364 (466)
T ss_dssp CCSS-CCSC-----CGG--GGGCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEEC-CSSC
T ss_pred CcCC-cCCC-----chh--hccCccCCEeECCCCc-cCCch-hhccCCCCCEEeC-CCCc
Confidence 6655 2322 212 4578899999998884 55554 5778899999999 6765
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=4.7e-21 Score=213.65 Aligned_cols=305 Identities=14% Similarity=0.071 Sum_probs=227.6
Q ss_pred ccceEEEEEEecCCCCCccccccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCccccccccccc-ccccC
Q 039167 506 EKKILHLTLAIGCGPMPIYDNIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVP-TNIEK 584 (923)
Q Consensus 506 ~~~~~~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~ 584 (923)
...++.+.+..+.........+..+++|++|++++|.+.... +..|..+++|++|++++|. +..+| ..+++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~ 115 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID-TYAFAYAHTIQKLYMGFNA-------IRYLPPHVFQN 115 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSC-------CCCCCTTTTTT
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccC-hhhccCCCCcCEEECCCCC-------CCcCCHHHhcC
Confidence 456778888776653222334678999999999999876643 4458999999999999776 66664 55899
Q ss_pred CCCCcEEeccCCCCccccchhh-hCCCCCcEEecCCCcccccc-CccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCc
Q 039167 585 LLHLKYLNLANQMEIERLPETL-CELYNLEHLNVNCCVKLREL-PQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRR 662 (923)
Q Consensus 585 l~~L~~L~L~~~~~l~~lp~~i-~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~ 662 (923)
+++|++|+|++|. +..+|..+ +++++|++|++++|. +..+ |..+..+++|++|++++| .+..++ ++.+++|+.
T Consensus 116 l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~--~~~l~~L~~ 190 (390)
T 3o6n_A 116 VPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSN-RLTHVD--LSLIPSLFH 190 (390)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSS-CCSBCC--GGGCTTCSE
T ss_pred CCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCC-cCCccc--cccccccce
Confidence 9999999999998 88999764 899999999999998 6665 456899999999999998 445543 567788888
Q ss_pred CCceEecccCCcccccccccCCCCCCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcC
Q 039167 663 VKEFVVGGGYGRACSLGSLKKLNLLRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEAL 742 (923)
Q Consensus 663 L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l 742 (923)
|++..+. +..+.....|+.+.+....-.. ......++|+.|++++|.+.. ...+
T Consensus 191 L~l~~n~--------l~~~~~~~~L~~L~l~~n~l~~-------~~~~~~~~L~~L~l~~n~l~~-----------~~~l 244 (390)
T 3o6n_A 191 ANVSYNL--------LSTLAIPIAVEELDASHNSINV-------VRGPVNVELTILKLQHNNLTD-----------TAWL 244 (390)
T ss_dssp EECCSSC--------CSEEECCSSCSEEECCSSCCCE-------EECCCCSSCCEEECCSSCCCC-----------CGGG
T ss_pred eeccccc--------ccccCCCCcceEEECCCCeeee-------ccccccccccEEECCCCCCcc-----------cHHH
Confidence 7665432 3333444556666555432110 011234789999999998643 1356
Q ss_pred CCCCCCCcEEEeeecCCCCCcCcccccccccccEEeEeCCCCCCCCCCCCCCCCccceeccCCcCceEeCccccCCCCCC
Q 039167 743 GPPPNLKELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRNCEHLPPLGKLPSLESLYIAGMKSVKRVGNEFLGVESDM 822 (923)
Q Consensus 743 ~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 822 (923)
..+++|+.|++++|.... ++|..+..+++|+.|+|++|.........+.+++|+.|++++|. +..++..+
T Consensus 245 ~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~------- 314 (390)
T 3o6n_A 245 LNYPGLVEVDLSYNELEK--IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQ------- 314 (390)
T ss_dssp GGCTTCSEEECCSSCCCE--EESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGH-------
T ss_pred cCCCCccEEECCCCcCCC--cChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCc-ceecCccc-------
Confidence 678999999999998776 65788889999999999999654433336789999999999996 55554332
Q ss_pred CCcccccCcccceeeccccccccccccccccccccccCcccceeeeccccc
Q 039167 823 DGSSVIAFAKLKKLTFYIMEELEEWDLGTAIKGEIIIMPRLSSLTIWSCRK 873 (923)
Q Consensus 823 ~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~lp~L~~L~l~~c~~ 873 (923)
..+++|+.|.+.++ .+.... +..+++|+.|++++|+.
T Consensus 315 -----~~l~~L~~L~L~~N-~i~~~~--------~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 315 -----PQFDRLENLYLDHN-SIVTLK--------LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp -----HHHTTCSEEECCSS-CCCCCC--------CCTTCCCSEEECCSSCE
T ss_pred -----cccCcCCEEECCCC-ccceeC--------chhhccCCEEEcCCCCc
Confidence 26789999998876 344442 45789999999999974
No 33
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=3.9e-21 Score=208.01 Aligned_cols=229 Identities=23% Similarity=0.281 Sum_probs=152.3
Q ss_pred cCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchhhhCCCCCcEEecCCCccccccCccccCC
Q 039167 554 KLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPETLCELYNLEHLNVNCCVKLRELPQGIGRL 633 (923)
Q Consensus 554 ~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 633 (923)
....++.|+|++|. +..+|..++++++|++|+|++|. +..+|..++++++|++|+|++|. +..+|..++.+
T Consensus 79 ~~~~l~~L~L~~n~-------l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l 149 (328)
T 4fcg_A 79 TQPGRVALELRSVP-------LPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP-LRALPASIASL 149 (328)
T ss_dssp TSTTCCEEEEESSC-------CSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGC
T ss_pred cccceeEEEccCCC-------chhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCc-cccCcHHHhcC
Confidence 45788999999665 77889889999999999999998 77999989999999999999987 77899999999
Q ss_pred CCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEecccCCcccccccccCCCCCCCceEeCCCCCCChhhhHHhhcCCCC
Q 039167 634 RKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLNLLRDCRIRGLGDVSDVDEARRAELEKKK 713 (923)
Q Consensus 634 ~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~ 713 (923)
++|++|++++|.....+|..++... . . ..+..++
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~-----------~-------~----------------------------~~~~~l~ 183 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTD-----------A-------S----------------------------GEHQGLV 183 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-------------------C----------------------------CCEEEST
T ss_pred cCCCEEECCCCCCccccChhHhhcc-----------c-------h----------------------------hhhccCC
Confidence 9999999998876676765443200 0 0 0012234
Q ss_pred CCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCcccccccccccEEeEeCCCCCCCCCC-CC
Q 039167 714 NLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRNCEHLPP-LG 792 (923)
Q Consensus 714 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~ 792 (923)
+|+.|++++|.+. .++..+..+++|+.|++++|.... + |..+..+++|+.|+|++|.....+|. ++
T Consensus 184 ~L~~L~L~~n~l~----------~lp~~l~~l~~L~~L~L~~N~l~~--l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~ 250 (328)
T 4fcg_A 184 NLQSLRLEWTGIR----------SLPASIANLQNLKSLKIRNSPLSA--L-GPAIHHLPKLEELDLRGCTALRNYPPIFG 250 (328)
T ss_dssp TCCEEEEEEECCC----------CCCGGGGGCTTCCEEEEESSCCCC--C-CGGGGGCTTCCEEECTTCTTCCBCCCCTT
T ss_pred CCCEEECcCCCcC----------cchHhhcCCCCCCEEEccCCCCCc--C-chhhccCCCCCEEECcCCcchhhhHHHhc
Confidence 4555555555432 112223334444444444444443 3 22344444555555554444444333 44
Q ss_pred CCCCccceeccCCcCceEeCccccCCCCCCCCcccccCcccceeeccccccccccccccccccccccCcccceeeecccc
Q 039167 793 KLPSLESLYIAGMKSVKRVGNEFLGVESDMDGSSVIAFAKLKKLTFYIMEELEEWDLGTAIKGEIIIMPRLSSLTIWSCR 872 (923)
Q Consensus 793 ~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~lp~L~~L~l~~c~ 872 (923)
.+++|++|+|++|. . .+.+|..+..+++|+.|+|++|+
T Consensus 251 ~l~~L~~L~L~~n~------------------------------------~------~~~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 251 GRAPLKRLILKDCS------------------------------------N------LLTLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp CCCCCCEEECTTCT------------------------------------T------CCBCCTTGGGCTTCCEEECTTCT
T ss_pred CCCCCCEEECCCCC------------------------------------c------hhhcchhhhcCCCCCEEeCCCCC
Confidence 44444444444433 2 22334456688999999999999
Q ss_pred cCCCCCcCCCCCCCccEEEe
Q 039167 873 KLKALPDHLLQKSTLQKLEI 892 (923)
Q Consensus 873 ~l~~lp~~l~~l~sL~~L~l 892 (923)
.+..+|..+.++++|+.+++
T Consensus 289 ~~~~iP~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 289 NLSRLPSLIAQLPANCIILV 308 (328)
T ss_dssp TCCCCCGGGGGSCTTCEEEC
T ss_pred chhhccHHHhhccCceEEeC
Confidence 99999999999999999999
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=7e-21 Score=233.45 Aligned_cols=326 Identities=15% Similarity=0.086 Sum_probs=201.3
Q ss_pred ccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccc-cccccCCCCCcEEeccCCCCcccc-chhh
Q 039167 529 ALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEV-PTNIEKLLHLKYLNLANQMEIERL-PETL 606 (923)
Q Consensus 529 ~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~L~~~~~l~~l-p~~i 606 (923)
-.+++++|++++|.+.... +..|.++++|++|+|++|. .+..+ |..++++++|++|+|++|. +..+ |..+
T Consensus 22 lp~~l~~LdLs~N~i~~i~-~~~~~~l~~L~~LdLs~n~------~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~ 93 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVT-ASSFPFLEQLQLLELGSQY------TPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAF 93 (844)
T ss_dssp SCTTCCEEEEESCCCCEEC-SSSCSSCCSCSEEEECTTC------CCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSS
T ss_pred CCCCcCEEECCCCcCCccC-hhHCcccccCeEEeCCCCC------CccccCHHHhcCCCCCCEEECCCCc-CcccCHhHc
Confidence 4578999999999987654 4558999999999999874 35556 6789999999999999999 6655 8899
Q ss_pred hCCCCCcEEecCCCccccccCcc--ccCCCCCCEEeCCCCcccccCC-cCCCCCCCCCcCCceEecccCCcccccccccC
Q 039167 607 CELYNLEHLNVNCCVKLRELPQG--IGRLRKLMYLDNECTVSLRYLP-VGIGKLIRLRRVKEFVVGGGYGRACSLGSLKK 683 (923)
Q Consensus 607 ~~L~~L~~L~L~~~~~l~~lp~~--i~~L~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~ 683 (923)
+++++|++|+|++|.....+|.. ++++++|++|++++|......| ..++++++|++|++..+......+..+..+..
T Consensus 94 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~ 173 (844)
T 3j0a_A 94 QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173 (844)
T ss_dssp CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH
T ss_pred cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC
Confidence 99999999999999844446665 8999999999999995433323 56899999999988776554433333333311
Q ss_pred CCCCCCceEeCCCCCCChhhhHHhhcCCCC------CCCcEEEEEcCCCCCCCccch-----------------------
Q 039167 684 LNLLRDCRIRGLGDVSDVDEARRAELEKKK------NLFELKLHFDQAGRRENEEDE----------------------- 734 (923)
Q Consensus 684 L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~------~L~~L~l~~~~~~~~~~~~~~----------------------- 734 (923)
++|+.+.+....-... ....+..+. .|+.|+++.|.+.........
T Consensus 174 -~~L~~L~L~~n~l~~~----~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~ 248 (844)
T 3j0a_A 174 -KTLSFFSLAANSLYSR----VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248 (844)
T ss_dssp -CSSCCCEECCSBSCCC----CCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSS
T ss_pred -CccceEECCCCccccc----cccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccc
Confidence 4566666554321110 001111222 377777776643221100000
Q ss_pred ----HHHHhhcCCC--CCCCCcEEEeeecCCCCCcCcccccccccccEEeEeCCCCCCCCCC-CCCCCCccceeccCCcC
Q 039167 735 ----DERLLEALGP--PPNLKELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRNCEHLPP-LGKLPSLESLYIAGMKS 807 (923)
Q Consensus 735 ----~~~~l~~l~~--~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~~ 807 (923)
.......+.. +++|+.|++++|.... ++|.++..+++|+.|+|++|......+. ++.+++|++|+|++|.
T Consensus 249 ~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~- 325 (844)
T 3j0a_A 249 FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS--LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL- 325 (844)
T ss_dssp CSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE--ECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC-
T ss_pred ccccCCCChhhhhccccCCccEEECCCCcccc--cChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC-
Confidence 0000011111 3577777777776665 5566677777788888877765544443 6777777777777775
Q ss_pred ceEeCccccCCCCCCCCcccccCcccceeeccccccccccccccccccccccCcccceeeecccccCCCCCcCCCCCCCc
Q 039167 808 VKRVGNEFLGVESDMDGSSVIAFAKLKKLTFYIMEELEEWDLGTAIKGEIIIMPRLSSLTIWSCRKLKALPDHLLQKSTL 887 (923)
Q Consensus 808 l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~sL 887 (923)
+..+.... ...+++|+.|.+.++ .+ ....+..+..+++|+.|++++|. +..++. +++|
T Consensus 326 l~~~~~~~-----------~~~l~~L~~L~L~~N-~i-----~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~----~~~L 383 (844)
T 3j0a_A 326 LGELYSSN-----------FYGLPKVAYIDLQKN-HI-----AIIQDQTFKFLEKLQTLDLRDNA-LTTIHF----IPSI 383 (844)
T ss_dssp CSCCCSCS-----------CSSCTTCCEEECCSC-CC-----CCCCSSCSCSCCCCCEEEEETCC-SCCCSS----CCSC
T ss_pred CCccCHHH-----------hcCCCCCCEEECCCC-CC-----CccChhhhcCCCCCCEEECCCCC-CCcccC----CCCc
Confidence 33222111 124555666655543 22 22222334456666666666653 333322 4445
Q ss_pred cEEEe
Q 039167 888 QKLEI 892 (923)
Q Consensus 888 ~~L~l 892 (923)
+.|++
T Consensus 384 ~~L~l 388 (844)
T 3j0a_A 384 PDIFL 388 (844)
T ss_dssp SEEEE
T ss_pred chhcc
Confidence 55554
No 35
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=9.8e-21 Score=216.03 Aligned_cols=333 Identities=14% Similarity=0.086 Sum_probs=230.3
Q ss_pred CCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccc-cccccCCCCCcEEeccCCCCcccc-chhhhC
Q 039167 531 RGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEV-PTNIEKLLHLKYLNLANQMEIERL-PETLCE 608 (923)
Q Consensus 531 ~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~L~~~~~l~~l-p~~i~~ 608 (923)
+++++|++++|.+.... +..|.++++|++|++++|. ....+ |..+.++++|++|+|++|. +..+ |..+++
T Consensus 30 ~~l~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~------~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~ 101 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELN-ETSFSRLQDLQFLKVEQQT------PGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAFNG 101 (455)
T ss_dssp TTCCEEECCSSCCCEEC-TTTTSSCTTCCEEECCCCS------TTCEECTTTTTTCTTCCEEECTTCT-TCEECTTTTTT
T ss_pred CccCEEEecCCccCcCC-hhHhccCccccEEECcCCc------ccceECcccccccccCCEEeCCCCc-cCccChhhccC
Confidence 78999999999887643 5568999999999999876 12244 4678999999999999999 6655 788999
Q ss_pred CCCCcEEecCCCccccccCcc--ccCCCCCCEEeCCCCcccccCCcC-CCCCCCCCcCCceEecccCCcccccccccCCC
Q 039167 609 LYNLEHLNVNCCVKLRELPQG--IGRLRKLMYLDNECTVSLRYLPVG-IGKLIRLRRVKEFVVGGGYGRACSLGSLKKLN 685 (923)
Q Consensus 609 L~~L~~L~L~~~~~l~~lp~~--i~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~ 685 (923)
+++|++|++++|.....+|.. +..+++|++|++++|......|.. ++++++|++|++..+......+..+..+.. .
T Consensus 102 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-~ 180 (455)
T 3v47_A 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG-K 180 (455)
T ss_dssp CTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTT-C
T ss_pred cccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccc-c
Confidence 999999999999833345555 899999999999999544444655 789999999988776654433333333311 1
Q ss_pred CCCCceEeCCCC--CCC--hhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCC
Q 039167 686 LLRDCRIRGLGD--VSD--VDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRN 761 (923)
Q Consensus 686 ~L~~l~i~~~~~--~~~--~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~ 761 (923)
+|+.+.+....- +.. ........+..+++|+.|++++|.+.. ............++|+.|+++++.....
T Consensus 181 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~------~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 254 (455)
T 3v47_A 181 HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE------SMAKRFFDAIAGTKIQSLILSNSYNMGS 254 (455)
T ss_dssp EEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH------HHHHHHHHHTTTCCEEEEECTTCTTTSC
T ss_pred cccccccccCcccccchhhccccccccccccceeeeEecCCCcccc------cchhhhhccccccceeeEeecccccccc
Confidence 233333332211 110 111122334456789999999887532 1112222223457899999987743321
Q ss_pred Cc--------Cccccc--ccccccEEeEeCCCCCCCCCC-CCCCCCccceeccCCcCceEeCccccCCCCCCCCcccccC
Q 039167 762 VV--------PKNWIM--SLTNLRFLGLHEWRNCEHLPP-LGKLPSLESLYIAGMKSVKRVGNEFLGVESDMDGSSVIAF 830 (923)
Q Consensus 762 ~~--------~p~~~~--~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f 830 (923)
.+ .+..+. ..++|+.|++++|......|. ++.+++|++|++++|. +..++...+ ..+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-----------~~l 322 (455)
T 3v47_A 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDNAF-----------WGL 322 (455)
T ss_dssp CTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTT-----------TTC
T ss_pred ccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccChhHh-----------cCc
Confidence 11 011111 246899999999977766665 8999999999999988 555543221 257
Q ss_pred cccceeeccccccccccccccccccccccCcccceeeecccccCCCCCcCCCCCCCccEEEeccCCc
Q 039167 831 AKLKKLTFYIMEELEEWDLGTAIKGEIIIMPRLSSLTIWSCRKLKALPDHLLQKSTLQKLEIWGGCH 897 (923)
Q Consensus 831 ~~L~~L~l~~~~~L~~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~~c~ 897 (923)
++|+.|.+.++ .+.+..+..+..+++|+.|++++|......|..+.++++|++|++ ++|.
T Consensus 323 ~~L~~L~Ls~N------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L-~~N~ 382 (455)
T 3v47_A 323 THLLKLNLSQN------FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL-DTNQ 382 (455)
T ss_dssp TTCCEEECCSS------CCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC-CSSC
T ss_pred ccCCEEECCCC------ccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEEC-CCCc
Confidence 88888887765 333444566778999999999999765556888999999999999 6664
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=7.1e-21 Score=224.16 Aligned_cols=304 Identities=14% Similarity=0.075 Sum_probs=225.3
Q ss_pred cceEEEEEEecCCCCCccccccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccc-cccCC
Q 039167 507 KKILHLTLAIGCGPMPIYDNIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPT-NIEKL 585 (923)
Q Consensus 507 ~~~~~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~l 585 (923)
..++.+.+..+.........+..+++|++|++++|.+.... +..|..+++|++|+|++|. +..+|. .++++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l 122 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID-TYAFAYAHTIQKLYMGFNA-------IRYLPPHVFQNV 122 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSC-------CCCCCTTTTTTC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCC-hHHhcCCCCCCEEECCCCc-------CCCCCHHHHcCC
Confidence 45566666655442222334678899999999999877643 4468999999999999776 666654 56999
Q ss_pred CCCcEEeccCCCCccccchh-hhCCCCCcEEecCCCcccccc-CccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcC
Q 039167 586 LHLKYLNLANQMEIERLPET-LCELYNLEHLNVNCCVKLREL-PQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRV 663 (923)
Q Consensus 586 ~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L 663 (923)
++|++|+|++|. +..+|.. ++++++|++|+|++|. +..+ |..++.+++|++|++++| .+..+| ++.+++|+.|
T Consensus 123 ~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~--~~~l~~L~~L 197 (597)
T 3oja_B 123 PLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSN-RLTHVD--LSLIPSLFHA 197 (597)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTS-CCSBCC--GGGCTTCSEE
T ss_pred CCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCC-CCCCcC--hhhhhhhhhh
Confidence 999999999998 8888876 4899999999999998 5555 556999999999999999 455554 5667888887
Q ss_pred CceEecccCCcccccccccCCCCCCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCC
Q 039167 664 KEFVVGGGYGRACSLGSLKKLNLLRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALG 743 (923)
Q Consensus 664 ~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~ 743 (923)
++..+. +..+.....|+.+.+....-. .. ......+|+.|++++|.+.. +..+.
T Consensus 198 ~l~~n~--------l~~l~~~~~L~~L~ls~n~l~-~~------~~~~~~~L~~L~L~~n~l~~-----------~~~l~ 251 (597)
T 3oja_B 198 NVSYNL--------LSTLAIPIAVEELDASHNSIN-VV------RGPVNVELTILKLQHNNLTD-----------TAWLL 251 (597)
T ss_dssp ECCSSC--------CSEEECCTTCSEEECCSSCCC-EE------ECSCCSCCCEEECCSSCCCC-----------CGGGG
T ss_pred hcccCc--------cccccCCchhheeeccCCccc-cc------ccccCCCCCEEECCCCCCCC-----------Chhhc
Confidence 665432 333444455666665543211 00 01123689999999998643 24567
Q ss_pred CCCCCCcEEEeeecCCCCCcCcccccccccccEEeEeCCCCCCCCCCCCCCCCccceeccCCcCceEeCccccCCCCCCC
Q 039167 744 PPPNLKELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRNCEHLPPLGKLPSLESLYIAGMKSVKRVGNEFLGVESDMD 823 (923)
Q Consensus 744 ~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 823 (923)
.+++|+.|++++|.... ++|.++..+++|+.|+|++|......+..+.+|+|+.|+|++|. +..++..+
T Consensus 252 ~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~-------- 320 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEK--IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQ-------- 320 (597)
T ss_dssp GCTTCSEEECCSSCCCE--EESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGH--------
T ss_pred cCCCCCEEECCCCccCC--CCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC-CCccCccc--------
Confidence 78999999999998877 66788999999999999999655433336779999999999987 55554332
Q ss_pred CcccccCcccceeeccccccccccccccccccccccCcccceeeeccccc
Q 039167 824 GSSVIAFAKLKKLTFYIMEELEEWDLGTAIKGEIIIMPRLSSLTIWSCRK 873 (923)
Q Consensus 824 ~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~lp~L~~L~l~~c~~ 873 (923)
..+++|+.|.+.++ .+.... +..+++|+.|+|++|+.
T Consensus 321 ----~~l~~L~~L~L~~N-~l~~~~--------~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 321 ----PQFDRLENLYLDHN-SIVTLK--------LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp ----HHHTTCSEEECCSS-CCCCCC--------CCTTCCCSEEECCSSCE
T ss_pred ----ccCCCCCEEECCCC-CCCCcC--------hhhcCCCCEEEeeCCCC
Confidence 26889999988876 344332 45789999999999975
No 37
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.84 E-value=1.9e-20 Score=220.31 Aligned_cols=144 Identities=21% Similarity=0.170 Sum_probs=114.6
Q ss_pred CCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCccccccccccc-ccccCCCCCcEEeccCCCCccccc-hhhhC
Q 039167 531 RGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVP-TNIEKLLHLKYLNLANQMEIERLP-ETLCE 608 (923)
Q Consensus 531 ~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~l~~lp-~~i~~ 608 (923)
++++.|++++|.+..+. +..|.++++|++|++++|. +..++ ..++++++|++|+|++|. +..+| ..+++
T Consensus 28 ~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~-------i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 98 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCE-------IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSG 98 (570)
T ss_dssp SSCCEEECCSCCCCEEC-TTTTTTCSSCCEEECTTCC-------CCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTT
T ss_pred ccccEEEccCCccCccC-hhHhhCCCCceEEECCCCc-------CCccCcccccCchhCCEEeCcCCc-CCccCHhhhcC
Confidence 57999999999877653 4458999999999999775 66664 568999999999999998 77665 68999
Q ss_pred CCCCcEEecCCCccccccCc-cccCCCCCCEEeCCCCcccc-cCCcCCCCCCCCCcCCceEecccCCcccccccccCC
Q 039167 609 LYNLEHLNVNCCVKLRELPQ-GIGRLRKLMYLDNECTVSLR-YLPVGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKL 684 (923)
Q Consensus 609 L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~-~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L 684 (923)
+++|++|++++|. +..+|. .++.+++|++|++++|.... .+|..++++++|++|++..+......+..+..+.+|
T Consensus 99 l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 99 LSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp CTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred ccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 9999999999997 777775 69999999999999994433 478999999999999887655433222334444444
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=215.69 Aligned_cols=272 Identities=21% Similarity=0.152 Sum_probs=172.9
Q ss_pred ccceEEEEEEecCCCCCccccccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCccccccccccccc-ccC
Q 039167 506 EKKILHLTLAIGCGPMPIYDNIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTN-IEK 584 (923)
Q Consensus 506 ~~~~~~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~-i~~ 584 (923)
...++.+.+..+.........+..+++|++|++++|.+.... +..|.++++|++|+|++|. +..+|.. +.+
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~ 102 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE-PGAFNNLFNLRTLGLRSNR-------LKLIPLGVFTG 102 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSC-------CCSCCTTSSTT
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeC-hhhhhCCccCCEEECCCCc-------CCccCcccccC
Confidence 457788888887764434567889999999999999877643 5668999999999999776 7777754 689
Q ss_pred CCCCcEEeccCCCCccc-cchhhhCCCCCcEEecCCCccccc-cCccccCCCCCCEEeCCCCcccccCCc-CCCCCCCCC
Q 039167 585 LLHLKYLNLANQMEIER-LPETLCELYNLEHLNVNCCVKLRE-LPQGIGRLRKLMYLDNECTVSLRYLPV-GIGKLIRLR 661 (923)
Q Consensus 585 l~~L~~L~L~~~~~l~~-lp~~i~~L~~L~~L~L~~~~~l~~-lp~~i~~L~~L~~L~l~~~~~l~~~p~-~i~~L~~L~ 661 (923)
+++|++|+|++|. +.. .|..+.++++|++|++++|. +.. .|..+..+++|++|++++| .+..+|. .++.+++|+
T Consensus 103 l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~ 179 (477)
T 2id5_A 103 LSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLI 179 (477)
T ss_dssp CTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCC
T ss_pred CCCCCEEECCCCc-cccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCc
Confidence 9999999999999 554 46789999999999999998 554 4667999999999999999 5566664 478888999
Q ss_pred cCCceEecccCCcccccccccCCCCCCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhc
Q 039167 662 RVKEFVVGGGYGRACSLGSLKKLNLLRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEA 741 (923)
Q Consensus 662 ~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 741 (923)
.|++..+....... ..+..+++|+.+.+......... ........+|+.|++++|.+... ....
T Consensus 180 ~L~l~~n~i~~~~~---~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~---------~~~~ 243 (477)
T 2id5_A 180 VLRLRHLNINAIRD---YSFKRLYRLKVLEISHWPYLDTM----TPNCLYGLNLTSLSITHCNLTAV---------PYLA 243 (477)
T ss_dssp EEEEESCCCCEECT---TCSCSCTTCCEEEEECCTTCCEE----CTTTTTTCCCSEEEEESSCCCSC---------CHHH
T ss_pred EEeCCCCcCcEeCh---hhcccCcccceeeCCCCcccccc----CcccccCccccEEECcCCccccc---------CHHH
Confidence 88776554332111 12333444444444432221110 01111223555555555543210 0012
Q ss_pred CCCCCCCCcEEEeeecCCCCCcCcccccccccccEEeEeCCCCCCCCCC-CCCCCCccceeccCCc
Q 039167 742 LGPPPNLKELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRNCEHLPP-LGKLPSLESLYIAGMK 806 (923)
Q Consensus 742 l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~ 806 (923)
+..+++|+.|++++|.... +++..+..+++|+.|+|++|......|. +..+++|+.|+|++|.
T Consensus 244 ~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 244 VRHLVYLRFLNLSYNPIST--IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp HTTCTTCCEEECCSSCCCE--ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred hcCccccCeeECCCCcCCc--cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 3344555555555554444 4344445555555555555543332222 4455555555555543
No 39
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.84 E-value=1.8e-20 Score=219.38 Aligned_cols=179 Identities=16% Similarity=0.101 Sum_probs=132.1
Q ss_pred CCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCccccccccccc-ccccCCCCCcEEeccCCCCccccchh-hhC
Q 039167 531 RGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVP-TNIEKLLHLKYLNLANQMEIERLPET-LCE 608 (923)
Q Consensus 531 ~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~-i~~ 608 (923)
++|++|++++|.+.... +..|.++++|++|++++|. +..++ ..++++++|++|+|++|. +..+|.. +++
T Consensus 26 ~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~-------i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~ 96 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSR-------INTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGP 96 (549)
T ss_dssp TTCCEEECCSSCCCEEC-SSTTSSCTTCCEEECTTSC-------CCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTT
T ss_pred CCccEEECcCCccCccC-hhhhhcCCcccEEECCCCC-------cCccChhhccccccCCEEECCCCc-cCccCHHHhcc
Confidence 78999999999876643 4558999999999999876 55554 678999999999999998 7777654 999
Q ss_pred CCCCcEEecCCCcccc--ccCccccCCCCCCEEeCCCCcccccCC-cCCCCCCCCCcCCceEecccCCcccccccccCCC
Q 039167 609 LYNLEHLNVNCCVKLR--ELPQGIGRLRKLMYLDNECTVSLRYLP-VGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLN 685 (923)
Q Consensus 609 L~~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~ 685 (923)
+++|++|++++|. +. ..|..++++++|++|++++|..+..+| ..++++++|++|++..+......+ ..+..++
T Consensus 97 l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~ 172 (549)
T 2z81_A 97 LSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS---QSLKSIR 172 (549)
T ss_dssp CTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT---TTTTTCS
T ss_pred CCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh---hhhhccc
Confidence 9999999999997 65 457789999999999999996567776 578999999999988766543222 2344445
Q ss_pred CCCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCC
Q 039167 686 LLRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAG 726 (923)
Q Consensus 686 ~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 726 (923)
+|+.+.+...... .... ..+..+++|+.|+++.|.+.
T Consensus 173 ~L~~L~l~~n~~~-~~~~---~~~~~l~~L~~L~L~~n~l~ 209 (549)
T 2z81_A 173 DIHHLTLHLSESA-FLLE---IFADILSSVRYLELRDTNLA 209 (549)
T ss_dssp EEEEEEEECSBST-THHH---HHHHSTTTBSEEEEESCBCT
T ss_pred cCceEecccCccc-ccch---hhHhhcccccEEEccCCccc
Confidence 5555555443221 1111 11234566667777666543
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.83 E-value=2e-19 Score=203.51 Aligned_cols=307 Identities=16% Similarity=0.137 Sum_probs=220.2
Q ss_pred ccceEEEEEEecCCCCCccccccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCC
Q 039167 506 EKKILHLTLAIGCGPMPIYDNIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKL 585 (923)
Q Consensus 506 ~~~~~~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l 585 (923)
...++.+.+..+.... .+.+..+++|++|++++|.+... + +..+++|++|++++|. +..+| ++++
T Consensus 41 l~~L~~L~Ls~n~l~~--~~~l~~l~~L~~L~Ls~n~l~~~--~--~~~l~~L~~L~Ls~N~-------l~~~~--~~~l 105 (457)
T 3bz5_A 41 LATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNITTL--D--LSQNTNLTYLACDSNK-------LTNLD--VTPL 105 (457)
T ss_dssp HTTCCEEECCSSCCCC--CTTGGGCTTCSEEECCSSCCSCC--C--CTTCTTCSEEECCSSC-------CSCCC--CTTC
T ss_pred cCCCCEEEccCCCccc--ChhhcccCCCCEEEccCCcCCeE--c--cccCCCCCEEECcCCC-------Cceee--cCCC
Confidence 3467788887776533 23688999999999999998774 3 7889999999999876 56665 8899
Q ss_pred CCCcEEeccCCCCccccchhhhCCCCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCc
Q 039167 586 LHLKYLNLANQMEIERLPETLCELYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKE 665 (923)
Q Consensus 586 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~ 665 (923)
++|++|++++|. +..+| ++.+++|++|++++|. +..+| ++.+++|++|++++|..+..+ .++.+++|++|++
T Consensus 106 ~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 177 (457)
T 3bz5_A 106 TKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDC 177 (457)
T ss_dssp TTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEEC
T ss_pred CcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEEC
Confidence 999999999998 88887 8999999999999997 77775 889999999999999766666 4788999999988
Q ss_pred eEecccCCcccccccccCCCCCCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCC
Q 039167 666 FVVGGGYGRACSLGSLKKLNLLRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPP 745 (923)
Q Consensus 666 ~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~ 745 (923)
..+.... +. +..++.|+.+.+....-. . ..+..+++|+.|++++|.+.. + . +..+
T Consensus 178 s~n~l~~-----l~-l~~l~~L~~L~l~~N~l~-~------~~l~~l~~L~~L~Ls~N~l~~----------i-p-~~~l 232 (457)
T 3bz5_A 178 SFNKITE-----LD-VSQNKLLNRLNCDTNNIT-K------LDLNQNIQLTFLDCSSNKLTE----------I-D-VTPL 232 (457)
T ss_dssp CSSCCCC-----CC-CTTCTTCCEEECCSSCCS-C------CCCTTCTTCSEEECCSSCCSC----------C-C-CTTC
T ss_pred CCCccce-----ec-cccCCCCCEEECcCCcCC-e------eccccCCCCCEEECcCCcccc----------c-C-cccc
Confidence 7665543 11 555666766666543221 1 136778999999999998643 1 1 6678
Q ss_pred CCCCcEEEeeecCCCCCcCcccccccc-------cccEEeEeCCCCCCCCCCCCCCCCccceeccCCcCceEeCccccCC
Q 039167 746 PNLKELWINKYRGKRNVVPKNWIMSLT-------NLRFLGLHEWRNCEHLPPLGKLPSLESLYIAGMKSVKRVGNEFLGV 818 (923)
Q Consensus 746 ~~L~~L~l~~~~~~~~~~~p~~~~~l~-------~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~~~~~~~ 818 (923)
++|+.|++++|.... +++..+..+. +|+.|++++|.....+| .+.+++|+.|++++|..+..++...
T Consensus 233 ~~L~~L~l~~N~l~~--~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~~--- 306 (457)
T 3bz5_A 233 TQLTYFDCSVNPLTE--LDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQA--- 306 (457)
T ss_dssp TTCSEEECCSSCCSC--CCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECTT---
T ss_pred CCCCEEEeeCCcCCC--cCHHHCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceeccCC---
Confidence 999999999998877 6444333333 45556666665555555 5778999999999998777766321
Q ss_pred CCCCCCcccccCcccceeeccccccccccccccccccccccCcccceeeecccccCCCC
Q 039167 819 ESDMDGSSVIAFAKLKKLTFYIMEELEEWDLGTAIKGEIIIMPRLSSLTIWSCRKLKAL 877 (923)
Q Consensus 819 ~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~l 877 (923)
..+........++|+.|.+.++ +++.. .+..+++|+.|++++|. +..+
T Consensus 307 -~~L~~L~l~~~~~L~~L~L~~N-~l~~l--------~l~~l~~L~~L~l~~N~-l~~l 354 (457)
T 3bz5_A 307 -AGITELDLSQNPKLVYLYLNNT-ELTEL--------DVSHNTKLKSLSCVNAH-IQDF 354 (457)
T ss_dssp -CCCSCCCCTTCTTCCEEECTTC-CCSCC--------CCTTCTTCSEEECCSSC-CCBC
T ss_pred -CcceEechhhcccCCEEECCCC-ccccc--------ccccCCcCcEEECCCCC-CCCc
Confidence 1111111234455666555543 23222 25678899999998885 4433
No 41
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.83 E-value=5.6e-20 Score=221.02 Aligned_cols=326 Identities=16% Similarity=0.113 Sum_probs=198.4
Q ss_pred CCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccc-cccccCCCCCcEEeccCCCCccccch-hhhC
Q 039167 531 RGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEV-PTNIEKLLHLKYLNLANQMEIERLPE-TLCE 608 (923)
Q Consensus 531 ~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~-~i~~ 608 (923)
+++++|++++|.+.... +..|.++++|++|++++|. +..+ |..++++++|++|+|++|. +..+|. .+++
T Consensus 25 ~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~ 95 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLP-AANFTRYSQLTSLDVGFNT-------ISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAF 95 (680)
T ss_dssp TTCSEEECCSSCCCCCC-GGGGGGGTTCSEEECCSSC-------CCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred CCCcEEECCCCCCCCcC-HHHHhCCCcCcEEECCCCc-------cCccCHHHHhcccCcCEEECCCCc-cCccChhhhcc
Confidence 68999999999877643 5568999999999999776 4444 6678999999999999998 888886 5999
Q ss_pred CCCCcEEecCCCccccccC-ccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEecccCCcccccccccCCCCC
Q 039167 609 LYNLEHLNVNCCVKLRELP-QGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLNLL 687 (923)
Q Consensus 609 L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L 687 (923)
+++|++|++++|. +..+| ..++++++|++|++++|......|..++++++|++|++..+......+..+. ...++.|
T Consensus 96 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L 173 (680)
T 1ziw_A 96 CTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELD-IFANSSL 173 (680)
T ss_dssp CTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHG-GGTTCEE
T ss_pred CCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhh-ccccccc
Confidence 9999999999997 66666 5799999999999999965555667788999999998876554331111111 1123445
Q ss_pred CCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCccc
Q 039167 688 RDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKNW 767 (923)
Q Consensus 688 ~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~ 767 (923)
+.+.+....- .. .....+..+.+|+.|.+..+.+.. .....+...+ ..++|+.|+++++.... .+|.+
T Consensus 174 ~~L~L~~n~l-~~---~~~~~~~~l~~L~~L~l~~~~l~~-----~~~~~~~~~l-~~~~L~~L~L~~n~l~~--~~~~~ 241 (680)
T 1ziw_A 174 KKLELSSNQI-KE---FSPGCFHAIGRLFGLFLNNVQLGP-----SLTEKLCLEL-ANTSIRNLSLSNSQLST--TSNTT 241 (680)
T ss_dssp SEEECTTCCC-CC---BCTTGGGGSSEECEEECTTCCCHH-----HHHHHHHHHH-TTSCCCEEECTTSCCCE--ECTTT
T ss_pred cEEECCCCcc-cc---cChhhhhhhhhhhhhhccccccCh-----hhHHHHHHHh-hhccccEEEccCCcccc--cChhH
Confidence 5555543211 11 111234455666666665544210 0111111111 23677777777766555 44666
Q ss_pred cccccc--ccEEeEeCCCCCCCCCC-CCCCCCccceeccCCcCceEeCccccCCCCCCCCcccccCcccceeeccccccc
Q 039167 768 IMSLTN--LRFLGLHEWRNCEHLPP-LGKLPSLESLYIAGMKSVKRVGNEFLGVESDMDGSSVIAFAKLKKLTFYIMEEL 844 (923)
Q Consensus 768 ~~~l~~--L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L 844 (923)
+..++. |+.|+|++|......+. ++.+++|++|++++|. +..++...+ ..+++|+.|.+.++..-
T Consensus 242 ~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-----------~~l~~L~~L~L~~~~~~ 309 (680)
T 1ziw_A 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN-IQHLFSHSL-----------HGLFNVRYLNLKRSFTK 309 (680)
T ss_dssp TGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC-BSEECTTTT-----------TTCTTCCEEECTTCBCC
T ss_pred hhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc-cCccChhhh-----------cCCCCccEEeccchhhh
Confidence 665544 77777777754443333 6677777777777765 333322111 13455555555432100
Q ss_pred cccccccccc----cccccCcccceeeecccccCCCCCcCCCCCCCccEEEe
Q 039167 845 EEWDLGTAIK----GEIIIMPRLSSLTIWSCRKLKALPDHLLQKSTLQKLEI 892 (923)
Q Consensus 845 ~~~~~~~~~~----~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l 892 (923)
..... ..+| ..+..+++|+.|++++|......|..+.++++|++|++
T Consensus 310 ~~~~~-~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 360 (680)
T 1ziw_A 310 QSISL-ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360 (680)
T ss_dssp C-------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEEC
T ss_pred ccccc-ccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEEC
Confidence 00000 0011 13344555666666555433333334555555555555
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=7.2e-21 Score=204.69 Aligned_cols=202 Identities=16% Similarity=0.157 Sum_probs=138.1
Q ss_pred CCceEEEeCCCCCCCc-cchHHhhcCCcccEEeccc-cCCcccccccccccccccCCCCCcEEeccCCCCcc-ccchhhh
Q 039167 531 RGLRSLLLESTKHSSV-ILPQLFDKLTCLRALKLEV-HNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIE-RLPETLC 607 (923)
Q Consensus 531 ~~Lr~L~l~~~~~~~~-~l~~~~~~~~~Lr~L~L~~-~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~-~lp~~i~ 607 (923)
.+++.|+++++.+... .+|..+.++++|++|++++ |. ....+|..++++++|++|+|++|. +. .+|..++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~------l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~ 122 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN------LVGPIPPAIAKLTQLHYLYITHTN-VSGAIPDFLS 122 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT------EESCCCGGGGGCTTCSEEEEEEEC-CEEECCGGGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc------ccccCChhHhcCCCCCEEECcCCe-eCCcCCHHHh
Confidence 5688888888887641 2455688899999999984 44 234678888999999999999998 54 8888899
Q ss_pred CCCCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCcCCCCCC-CCCcCCceEecccCCcccccccccCCCC
Q 039167 608 ELYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLI-RLRRVKEFVVGGGYGRACSLGSLKKLNL 686 (923)
Q Consensus 608 ~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~-~L~~L~~~~~~~~~~~~~~l~~L~~L~~ 686 (923)
++++|++|++++|.....+|..+..+++|++|++++|.....+|..++.++ +|+.|++..+....
T Consensus 123 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~-------------- 188 (313)
T 1ogq_A 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG-------------- 188 (313)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE--------------
T ss_pred CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec--------------
Confidence 999999999999873347888899999999999998854446777776665 66666543322110
Q ss_pred CCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCcc
Q 039167 687 LRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKN 766 (923)
Q Consensus 687 L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~ 766 (923)
..+..+..++ |+.|++++|.... .+|.
T Consensus 189 --------------------------------------------------~~~~~~~~l~-L~~L~Ls~N~l~~--~~~~ 215 (313)
T 1ogq_A 189 --------------------------------------------------KIPPTFANLN-LAFVDLSRNMLEG--DASV 215 (313)
T ss_dssp --------------------------------------------------ECCGGGGGCC-CSEEECCSSEEEE--CCGG
T ss_pred --------------------------------------------------cCChHHhCCc-ccEEECcCCcccC--cCCH
Confidence 0000111112 5555555554443 3355
Q ss_pred cccccccccEEeEeCCCCCCCCCCCCCCCCccceeccCCc
Q 039167 767 WIMSLTNLRFLGLHEWRNCEHLPPLGKLPSLESLYIAGMK 806 (923)
Q Consensus 767 ~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~ 806 (923)
.+..+++|+.|+|++|.....+|.+..+++|++|++++|.
T Consensus 216 ~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~ 255 (313)
T 1ogq_A 216 LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR 255 (313)
T ss_dssp GCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSC
T ss_pred HHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCc
Confidence 6667777777777777655555556667777777777665
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=2.9e-19 Score=194.28 Aligned_cols=239 Identities=20% Similarity=0.190 Sum_probs=113.9
Q ss_pred CceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccc-cccCCCCCcEEeccCCCCcccc-chhhhCC
Q 039167 532 GLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPT-NIEKLLHLKYLNLANQMEIERL-PETLCEL 609 (923)
Q Consensus 532 ~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~~l~~l-p~~i~~L 609 (923)
+++.+.++++.+..+ |..+ .+.|++|++++|. +..+|. .++++++|++|+|++|. +..+ |..++++
T Consensus 32 ~l~~l~~~~~~l~~l--p~~~--~~~l~~L~L~~n~-------i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l 99 (330)
T 1xku_A 32 HLRVVQCSDLGLEKV--PKDL--PPDTALLDLQNNK-------ITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPL 99 (330)
T ss_dssp ETTEEECTTSCCCSC--CCSC--CTTCCEEECCSSC-------CCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTC
T ss_pred CCeEEEecCCCcccc--CccC--CCCCeEEECCCCc-------CCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcCC
Confidence 456666665554332 2111 2456666666544 444443 45666666666666666 4444 5566666
Q ss_pred CCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCC-cCCCCCCCCCcCCceEecccCCcccccccccCCCCCC
Q 039167 610 YNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLP-VGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLNLLR 688 (923)
Q Consensus 610 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~ 688 (923)
++|++|++++|. +..+|..+. ++|++|++++|. +..++ ..++++++|++|++..+.... .+.....+..+++|+
T Consensus 100 ~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~l~~L~ 174 (330)
T 1xku_A 100 VKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKS-SGIENGAFQGMKKLS 174 (330)
T ss_dssp TTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCG-GGBCTTGGGGCTTCC
T ss_pred CCCCEEECCCCc-CCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCc-cCcChhhccCCCCcC
Confidence 666666666665 556665544 566666666663 33333 235556666665544332211 000111222223333
Q ss_pred CceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCcccc
Q 039167 689 DCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKNWI 768 (923)
Q Consensus 689 ~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~ 768 (923)
.+.+....-. .. +.. ..++|+.|++++|.+.. ..+..+..+++|+.|++++|.... +++.++
T Consensus 175 ~L~l~~n~l~-~l----~~~--~~~~L~~L~l~~n~l~~---------~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~ 236 (330)
T 1xku_A 175 YIRIADTNIT-TI----PQG--LPPSLTELHLDGNKITK---------VDAASLKGLNNLAKLGLSFNSISA--VDNGSL 236 (330)
T ss_dssp EEECCSSCCC-SC----CSS--CCTTCSEEECTTSCCCE---------ECTGGGTTCTTCCEEECCSSCCCE--ECTTTG
T ss_pred EEECCCCccc-cC----Ccc--ccccCCEEECCCCcCCc---------cCHHHhcCCCCCCEEECCCCcCce--eChhhc
Confidence 3222221100 00 000 11345555555544321 112234445555555555555444 434445
Q ss_pred cccccccEEeEeCCCCCCCCCC-CCCCCCccceeccCCc
Q 039167 769 MSLTNLRFLGLHEWRNCEHLPP-LGKLPSLESLYIAGMK 806 (923)
Q Consensus 769 ~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~ 806 (923)
..+++|+.|+|++|... .+|. +..+++|++|++++|.
T Consensus 237 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 237 ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp GGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSC
T ss_pred cCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCc
Confidence 55555555555555333 3332 5555555555555554
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=2.9e-19 Score=194.28 Aligned_cols=241 Identities=22% Similarity=0.243 Sum_probs=117.6
Q ss_pred CceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCccccccccccc-ccccCCCCCcEEeccCCCCcccc-chhhhCC
Q 039167 532 GLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVP-TNIEKLLHLKYLNLANQMEIERL-PETLCEL 609 (923)
Q Consensus 532 ~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~l~~l-p~~i~~L 609 (923)
+++.+.++++.+..+ |..+ .+.|++|++++|. +..++ ..+.++++|++|+|++|. +..+ |..++++
T Consensus 34 ~l~~l~~~~~~l~~i--p~~~--~~~l~~L~l~~n~-------i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l 101 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAV--PKEI--SPDTTLLDLQNND-------ISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPL 101 (332)
T ss_dssp ETTEEECCSSCCSSC--CSCC--CTTCCEEECCSSC-------CCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTC
T ss_pred cCCEEECCCCCcccc--CCCC--CCCCeEEECCCCc-------CCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCc
Confidence 455666665554332 2111 2456666666544 44442 355666666666666665 4444 5556666
Q ss_pred CCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCc-CCCCCCCCCcCCceEecccCCcccccccccCCCCCC
Q 039167 610 YNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPV-GIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLNLLR 688 (923)
Q Consensus 610 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~ 688 (923)
++|++|++++|. +..+|..+. ++|++|++++| .+..+|. .++.+++|++|++..+.... .+.....+..+ +|+
T Consensus 102 ~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~l-~L~ 175 (332)
T 2ft3_A 102 RKLQKLYISKNH-LVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLEN-SGFEPGAFDGL-KLN 175 (332)
T ss_dssp TTCCEEECCSSC-CCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBG-GGSCTTSSCSC-CCS
T ss_pred CCCCEEECCCCc-CCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCcccc-CCCCcccccCC-ccC
Confidence 666666666665 555665544 56666666665 3344443 25556666665554433211 00001111111 222
Q ss_pred CceEeCCC--CCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCcc
Q 039167 689 DCRIRGLG--DVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKN 766 (923)
Q Consensus 689 ~l~i~~~~--~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~ 766 (923)
.+.+.... .++ .. ..++|+.|++++|.+.. .....+..+++|+.|++++|.... +++.
T Consensus 176 ~L~l~~n~l~~l~-------~~--~~~~L~~L~l~~n~i~~---------~~~~~l~~l~~L~~L~L~~N~l~~--~~~~ 235 (332)
T 2ft3_A 176 YLRISEAKLTGIP-------KD--LPETLNELHLDHNKIQA---------IELEDLLRYSKLYRLGLGHNQIRM--IENG 235 (332)
T ss_dssp CCBCCSSBCSSCC-------SS--SCSSCSCCBCCSSCCCC---------CCTTSSTTCTTCSCCBCCSSCCCC--CCTT
T ss_pred EEECcCCCCCccC-------cc--ccCCCCEEECCCCcCCc---------cCHHHhcCCCCCCEEECCCCcCCc--CChh
Confidence 22222111 010 00 11355556665554322 112234455666666666665555 4444
Q ss_pred cccccccccEEeEeCCCCCCCCCC-CCCCCCccceeccCCcCceEeC
Q 039167 767 WIMSLTNLRFLGLHEWRNCEHLPP-LGKLPSLESLYIAGMKSVKRVG 812 (923)
Q Consensus 767 ~~~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~~l~~~~ 812 (923)
++..+++|+.|+|++|... .+|. ++.+++|++|++++|. ++.++
T Consensus 236 ~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~-l~~~~ 280 (332)
T 2ft3_A 236 SLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN-ITKVG 280 (332)
T ss_dssp GGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSC-CCBCC
T ss_pred HhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCC-CCccC
Confidence 5566666666666666433 3443 5566666666666654 43333
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=6.3e-20 Score=197.32 Aligned_cols=249 Identities=19% Similarity=0.174 Sum_probs=197.4
Q ss_pred cceEEEEEEecCCCC--CccccccccCCceEEEeCC-CCCCCccchHHhhcCCcccEEeccccCCcccccccc-cccccc
Q 039167 507 KKILHLTLAIGCGPM--PIYDNIEALRGLRSLLLES-TKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIK-EVPTNI 582 (923)
Q Consensus 507 ~~~~~l~l~~~~~~~--~~~~~~~~~~~Lr~L~l~~-~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~-~lp~~i 582 (923)
..++++.+..+.... ..+..+..+++|++|++++ |.+... +|..|.++++|++|++++|. +. .+|..+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~-------l~~~~p~~~ 121 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTN-------VSGAIPDFL 121 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEEC-------CEEECCGGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCe-------eCCcCCHHH
Confidence 578889998887654 4567889999999999995 765543 46668999999999999876 44 788899
Q ss_pred cCCCCCcEEeccCCCCcc-ccchhhhCCCCCcEEecCCCccccccCccccCCC-CCCEEeCCCCcccccCCcCCCCCCCC
Q 039167 583 EKLLHLKYLNLANQMEIE-RLPETLCELYNLEHLNVNCCVKLRELPQGIGRLR-KLMYLDNECTVSLRYLPVGIGKLIRL 660 (923)
Q Consensus 583 ~~l~~L~~L~L~~~~~l~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~-~L~~L~l~~~~~l~~~p~~i~~L~~L 660 (923)
+++++|++|+|++|. +. .+|..++++++|++|++++|.....+|..++.++ +|++|++++|.....+|..++.++ |
T Consensus 122 ~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L 199 (313)
T 1ogq_A 122 SQIKTLVTLDFSYNA-LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L 199 (313)
T ss_dssp GGCTTCCEEECCSSE-EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C
T ss_pred hCCCCCCEEeCCCCc-cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c
Confidence 999999999999999 55 8999999999999999999984448999999998 999999999966557888888776 7
Q ss_pred CcCCceEecccCCcccccccccCCCCCCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhh
Q 039167 661 RRVKEFVVGGGYGRACSLGSLKKLNLLRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLE 740 (923)
Q Consensus 661 ~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 740 (923)
+.|++..+..... ....+..+++|+.|++++|.+.. .+.
T Consensus 200 ~~L~Ls~N~l~~~-------------------------------~~~~~~~l~~L~~L~L~~N~l~~----------~~~ 238 (313)
T 1ogq_A 200 AFVDLSRNMLEGD-------------------------------ASVLFGSDKNTQKIHLAKNSLAF----------DLG 238 (313)
T ss_dssp SEEECCSSEEEEC-------------------------------CGGGCCTTSCCSEEECCSSEECC----------BGG
T ss_pred cEEECcCCcccCc-------------------------------CCHHHhcCCCCCEEECCCCceee----------ecC
Confidence 7776644332210 11334556778888888776432 123
Q ss_pred cCCCCCCCCcEEEeeecCCCCCcCcccccccccccEEeEeCCCCCCCCCCCCCCCCccceeccCCcCc
Q 039167 741 ALGPPPNLKELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRNCEHLPPLGKLPSLESLYIAGMKSV 808 (923)
Q Consensus 741 ~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l 808 (923)
.+..+++|++|++++|.... ..|.++..+++|+.|+|++|.....+|..+.+++|+.|++.+|+.+
T Consensus 239 ~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 239 KVGLSKNLNGLDLRNNRIYG--TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp GCCCCTTCCEEECCSSCCEE--CCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred cccccCCCCEEECcCCcccC--cCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCc
Confidence 35667899999999888764 2377888999999999999987778888888999999999988743
No 46
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=3.3e-20 Score=200.77 Aligned_cols=221 Identities=25% Similarity=0.329 Sum_probs=142.9
Q ss_pred cCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchhhhCC
Q 039167 530 LRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPETLCEL 609 (923)
Q Consensus 530 ~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L 609 (923)
..+++.|+++++.+.. +|..+.++++|++|+|++|. +..+|..++++++|++|+|++|. +..+|..++++
T Consensus 80 ~~~l~~L~L~~n~l~~--lp~~l~~l~~L~~L~L~~n~-------l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l 149 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ--FPDQAFRLSHLQHMTIDAAG-------LMELPDTMQQFAGLETLTLARNP-LRALPASIASL 149 (328)
T ss_dssp STTCCEEEEESSCCSS--CCSCGGGGTTCSEEEEESSC-------CCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGC
T ss_pred ccceeEEEccCCCchh--cChhhhhCCCCCEEECCCCC-------ccchhHHHhccCCCCEEECCCCc-cccCcHHHhcC
Confidence 3567778888777663 34446678888888888665 56788888888888888888887 77888888888
Q ss_pred CCCcEEecCCCccccccCccccC---------CCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEecccCCccccccc
Q 039167 610 YNLEHLNVNCCVKLRELPQGIGR---------LRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVGGGYGRACSLGS 680 (923)
Q Consensus 610 ~~L~~L~L~~~~~l~~lp~~i~~---------L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~ 680 (923)
++|++|++++|..+..+|..++. +++|++|++++| .+..+|..++++++|++|++..+....
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~-------- 220 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSA-------- 220 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCC--------
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCc--------
Confidence 88888888888777788877654 788888888777 455677666666666666554332211
Q ss_pred ccCCCCCCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCC
Q 039167 681 LKKLNLLRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKR 760 (923)
Q Consensus 681 L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~ 760 (923)
++ ..+..+++|+.|++++|.+.. .++..+..+++|+.|++++|....
T Consensus 221 -----------------l~-------~~l~~l~~L~~L~Ls~n~~~~---------~~p~~~~~l~~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 221 -----------------LG-------PAIHHLPKLEELDLRGCTALR---------NYPPIFGGRAPLKRLILKDCSNLL 267 (328)
T ss_dssp -----------------CC-------GGGGGCTTCCEEECTTCTTCC---------BCCCCTTCCCCCCEEECTTCTTCC
T ss_pred -----------------Cc-------hhhccCCCCCEEECcCCcchh---------hhHHHhcCCCCCCEEECCCCCchh
Confidence 00 112234445555555444221 122334555666666666654443
Q ss_pred CCcCcccccccccccEEeEeCCCCCCCCCC-CCCCCCccceeccC
Q 039167 761 NVVPKNWIMSLTNLRFLGLHEWRNCEHLPP-LGKLPSLESLYIAG 804 (923)
Q Consensus 761 ~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~ 804 (923)
..|.++..+++|+.|+|++|...+.+|. ++.+++|+.+.+..
T Consensus 268 --~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 268 --TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp --BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred --hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 2255566666666666666666666555 66666666666553
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.80 E-value=3.9e-19 Score=193.34 Aligned_cols=292 Identities=16% Similarity=0.141 Sum_probs=185.6
Q ss_pred CcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccc-hhhhCCCCCcEEecCCCcccccc-CccccCC
Q 039167 556 TCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLP-ETLCELYNLEHLNVNCCVKLREL-PQGIGRL 633 (923)
Q Consensus 556 ~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L 633 (923)
.++++++++++. +..+|..+. ++|++|++++|. +..+| ..++++++|++|++++|. +..+ |..++.+
T Consensus 33 c~l~~l~~~~~~-------l~~ip~~~~--~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l 101 (332)
T 2ft3_A 33 CHLRVVQCSDLG-------LKAVPKEIS--PDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPL 101 (332)
T ss_dssp EETTEEECCSSC-------CSSCCSCCC--TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTC
T ss_pred ccCCEEECCCCC-------ccccCCCCC--CCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCc
Confidence 368999999654 778887764 689999999998 77774 579999999999999998 6655 7789999
Q ss_pred CCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEecccCCcccccccccCCCCCCCceEeCCCCCCChhhhHHhhcCCCC
Q 039167 634 RKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLNLLRDCRIRGLGDVSDVDEARRAELEKKK 713 (923)
Q Consensus 634 ~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~ 713 (923)
++|++|++++| .+..+|..+. ++|++|++..+........ .+..+++|+.+.+....-.. .......+..+
T Consensus 102 ~~L~~L~L~~n-~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~---~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~l- 172 (332)
T 2ft3_A 102 RKLQKLYISKN-HLVEIPPNLP--SSLVELRIHDNRIRKVPKG---VFSGLRNMNCIEMGGNPLEN--SGFEPGAFDGL- 172 (332)
T ss_dssp TTCCEEECCSS-CCCSCCSSCC--TTCCEEECCSSCCCCCCSG---GGSSCSSCCEEECCSCCCBG--GGSCTTSSCSC-
T ss_pred CCCCEEECCCC-cCCccCcccc--ccCCEEECCCCccCccCHh---HhCCCccCCEEECCCCcccc--CCCCcccccCC-
Confidence 99999999998 5678888776 7888888766554431111 23445555555554422100 00111233334
Q ss_pred CCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCcccccccccccEEeEeCCCCCCCCC-CCC
Q 039167 714 NLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRNCEHLP-PLG 792 (923)
Q Consensus 714 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~ 792 (923)
+|+.|++++|.+.. ++..+ +++|++|++++|.... +++.++..+++|+.|+|++|......+ .++
T Consensus 173 ~L~~L~l~~n~l~~----------l~~~~--~~~L~~L~l~~n~i~~--~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 238 (332)
T 2ft3_A 173 KLNYLRISEAKLTG----------IPKDL--PETLNELHLDHNKIQA--IELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238 (332)
T ss_dssp CCSCCBCCSSBCSS----------CCSSS--CSSCSCCBCCSSCCCC--CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred ccCEEECcCCCCCc----------cCccc--cCCCCEEECCCCcCCc--cCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence 67777777776432 11111 2577777777777666 545667777778888887775544333 267
Q ss_pred CCCCccceeccCCcCceEeCccccCCCCCCCCcccccCcccceeeccccccccccccccccccc-cccCcccceeeeccc
Q 039167 793 KLPSLESLYIAGMKSVKRVGNEFLGVESDMDGSSVIAFAKLKKLTFYIMEELEEWDLGTAIKGE-IIIMPRLSSLTIWSC 871 (923)
Q Consensus 793 ~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~-~~~lp~L~~L~l~~c 871 (923)
.+++|+.|++++|. +..++..+ ..+++|+.|.+.++ .++........+.. ...++.|+.|++++|
T Consensus 239 ~l~~L~~L~L~~N~-l~~lp~~l------------~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N 304 (332)
T 2ft3_A 239 FLPTLRELHLDNNK-LSRVPAGL------------PDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNN 304 (332)
T ss_dssp GCTTCCEEECCSSC-CCBCCTTG------------GGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSS
T ss_pred CCCCCCEEECCCCc-CeecChhh------------hcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecC
Confidence 77778888877775 44444321 24667777766654 34433221100000 012567777777777
Q ss_pred ccC--CCCCcCCCCCCCccEEEeccCC
Q 039167 872 RKL--KALPDHLLQKSTLQKLEIWGGC 896 (923)
Q Consensus 872 ~~l--~~lp~~l~~l~sL~~L~l~~~c 896 (923)
+.. ...|..+..+++|+.+++ ++|
T Consensus 305 ~~~~~~~~~~~~~~l~~L~~l~l-~~n 330 (332)
T 2ft3_A 305 PVPYWEVQPATFRCVTDRLAIQF-GNY 330 (332)
T ss_dssp SSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccCcccccccchhhhhhc-ccc
Confidence 654 334455667777777777 555
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.80 E-value=4.2e-19 Score=211.92 Aligned_cols=146 Identities=18% Similarity=0.156 Sum_probs=103.8
Q ss_pred ccceEEEEEEecCCCCCccccccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccc-cccC
Q 039167 506 EKKILHLTLAIGCGPMPIYDNIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPT-NIEK 584 (923)
Q Consensus 506 ~~~~~~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~ 584 (923)
+..++++.+..+.........|..+++|++|++++|.+..+. +..|.++++|++|+|++|. +..+|. .|.+
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~-~~~f~~L~~L~~L~Ls~N~-------l~~l~~~~f~~ 122 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNP-------IQSLALGAFSG 122 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCC-------CCEECGGGGTT
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcC-hhHhcCCCCCCEEEccCCc-------CCCCCHHHhcC
Confidence 456777877777664333456788888888888888776543 4557888888888888765 667764 4688
Q ss_pred CCCCcEEeccCCCCccccch-hhhCCCCCcEEecCCCcccc--ccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCC
Q 039167 585 LLHLKYLNLANQMEIERLPE-TLCELYNLEHLNVNCCVKLR--ELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLR 661 (923)
Q Consensus 585 l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~ 661 (923)
|.+|++|+|++|. +..+|. .+++|++|++|++++|. +. .+|..++.+++|++|++++|......|..++.+.+++
T Consensus 123 L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~ 200 (635)
T 4g8a_A 123 LSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 200 (635)
T ss_dssp CTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred CCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccccccccccccchhhhh
Confidence 8888888888887 777765 47888888888888886 44 3567788888888888888743333344444444433
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=5.6e-19 Score=193.89 Aligned_cols=278 Identities=17% Similarity=0.167 Sum_probs=159.4
Q ss_pred ccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccc-cccCCCCCcEEeccCCCCcccc-chhh
Q 039167 529 ALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPT-NIEKLLHLKYLNLANQMEIERL-PETL 606 (923)
Q Consensus 529 ~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~~l~~l-p~~i 606 (923)
.++.....+++++.+..+ |..+ .+.|++|++++|. +..+|. .+.++++|++|++++|. +..+ |..+
T Consensus 29 ~C~~~~~c~~~~~~l~~i--P~~~--~~~L~~L~l~~n~-------i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 96 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSI--PSGL--TEAVKSLDLSNNR-------ITYISNSDLQRCVNLQALVLTSNG-INTIEEDSF 96 (353)
T ss_dssp EECTTSEEECCSTTCSSC--CTTC--CTTCCEEECTTSC-------CCEECTTTTTTCTTCCEEECTTSC-CCEECTTTT
T ss_pred CCCCCeEeeCCCCCcccc--cccc--cccCcEEECCCCc-------CcccCHHHhccCCCCCEEECCCCc-cCccCHhhc
Confidence 344444566666665543 3212 3578888888665 566655 67888888888888887 6655 4568
Q ss_pred hCCCCCcEEecCCCccccccCcc-ccCCCCCCEEeCCCCcccccCCc--CCCCCCCCCcCCceEecccCCcccccccccC
Q 039167 607 CELYNLEHLNVNCCVKLRELPQG-IGRLRKLMYLDNECTVSLRYLPV--GIGKLIRLRRVKEFVVGGGYGRACSLGSLKK 683 (923)
Q Consensus 607 ~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~--~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~ 683 (923)
+++++|++|++++|. +..+|.. ++.+++|++|++++| .+..+|. .++.+++|++|++..+.... .+
T Consensus 97 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~-------~~-- 165 (353)
T 2z80_A 97 SSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFT-------KI-- 165 (353)
T ss_dssp TTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCC-------EE--
T ss_pred CCCCCCCEEECCCCc-CCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCcccc-------cc--
Confidence 888888888888886 7777766 778888888888887 4555654 45666666666554332100 00
Q ss_pred CCCCCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCc
Q 039167 684 LNLLRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVV 763 (923)
Q Consensus 684 L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~ 763 (923)
....+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.... +
T Consensus 166 ---------------------~~~~~~~l~~L~~L~l~~n~l~~---------~~~~~l~~l~~L~~L~l~~n~l~~--~ 213 (353)
T 2z80_A 166 ---------------------QRKDFAGLTFLEELEIDASDLQS---------YEPKSLKSIQNVSHLILHMKQHIL--L 213 (353)
T ss_dssp ---------------------CTTTTTTCCEEEEEEEEETTCCE---------ECTTTTTTCSEEEEEEEECSCSTT--H
T ss_pred ---------------------CHHHccCCCCCCEEECCCCCcCc---------cCHHHHhccccCCeecCCCCcccc--c
Confidence 00122334455566666554321 112334445555555555555443 4
Q ss_pred CcccccccccccEEeEeCCCCCCCCCCCCCCCCccceeccCCcCceEeCccccCCCCCCCCcccccCcccceeecccccc
Q 039167 764 PKNWIMSLTNLRFLGLHEWRNCEHLPPLGKLPSLESLYIAGMKSVKRVGNEFLGVESDMDGSSVIAFAKLKKLTFYIMEE 843 (923)
Q Consensus 764 ~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~ 843 (923)
++.++..+++|+.|++++|..... +...... ....+.++.+.+.++ .
T Consensus 214 ~~~~~~~~~~L~~L~L~~n~l~~~------------------------~~~~l~~--------~~~~~~l~~l~L~~~-~ 260 (353)
T 2z80_A 214 LEIFVDVTSSVECLELRDTDLDTF------------------------HFSELST--------GETNSLIKKFTFRNV-K 260 (353)
T ss_dssp HHHHHHHTTTEEEEEEESCBCTTC------------------------CCC--------------CCCCCCEEEEESC-B
T ss_pred hhhhhhhcccccEEECCCCccccc------------------------ccccccc--------ccccchhhccccccc-c
Confidence 222233455555555555532221 1000000 012333444444433 2
Q ss_pred ccccccccccccccccCcccceeeecccccCCCCCcCC-CCCCCccEEEeccCCc
Q 039167 844 LEEWDLGTAIKGEIIIMPRLSSLTIWSCRKLKALPDHL-LQKSTLQKLEIWGGCH 897 (923)
Q Consensus 844 L~~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~l-~~l~sL~~L~l~~~c~ 897 (923)
+....+. .+|..+..+++|+.|++++|. +..+|..+ .++++|++|++ ++||
T Consensus 261 l~~~~l~-~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L-~~N~ 312 (353)
T 2z80_A 261 ITDESLF-QVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWL-HTNP 312 (353)
T ss_dssp CCHHHHH-HHHHHHHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC-CSSC
T ss_pred ccCcchh-hhHHHHhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEe-eCCC
Confidence 3322221 234556788999999999995 66888875 78999999999 6654
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.78 E-value=1.2e-18 Score=189.38 Aligned_cols=291 Identities=17% Similarity=0.157 Sum_probs=178.2
Q ss_pred CCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccch-hhhCCCCCcEEecCCCcccccc-CccccC
Q 039167 555 LTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPE-TLCELYNLEHLNVNCCVKLREL-PQGIGR 632 (923)
Q Consensus 555 ~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~ 632 (923)
..++++++++++. +..+|..+. ++|++|+|++|. +..+|. .++++++|++|++++|. +..+ |..+..
T Consensus 30 ~c~l~~l~~~~~~-------l~~lp~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 98 (330)
T 1xku_A 30 QCHLRVVQCSDLG-------LEKVPKDLP--PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAP 98 (330)
T ss_dssp EEETTEEECTTSC-------CCSCCCSCC--TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTT
T ss_pred cCCCeEEEecCCC-------ccccCccCC--CCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcC
Confidence 3478999998554 778887664 689999999998 887775 79999999999999998 6655 888999
Q ss_pred CCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEecccCCcccccccccCCCCCCCceEeCCCCCCChhhhHHhhcCCC
Q 039167 633 LRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLNLLRDCRIRGLGDVSDVDEARRAELEKK 712 (923)
Q Consensus 633 L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~ 712 (923)
+++|++|++++| .+..+|..+. ++|++|++..+...... ...+..+++|+.+.+....-.. .......+..+
T Consensus 99 l~~L~~L~Ls~n-~l~~l~~~~~--~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~l 170 (330)
T 1xku_A 99 LVKLERLYLSKN-QLKELPEKMP--KTLQELRVHENEITKVR---KSVFNGLNQMIVVELGTNPLKS--SGIENGAFQGM 170 (330)
T ss_dssp CTTCCEEECCSS-CCSBCCSSCC--TTCCEEECCSSCCCBBC---HHHHTTCTTCCEEECCSSCCCG--GGBCTTGGGGC
T ss_pred CCCCCEEECCCC-cCCccChhhc--ccccEEECCCCcccccC---HhHhcCCccccEEECCCCcCCc--cCcChhhccCC
Confidence 999999999998 5678887765 68888877655433211 1123445555555554422110 01112344556
Q ss_pred CCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCcccccccccccEEeEeCCCCCCCCC-CC
Q 039167 713 KNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRNCEHLP-PL 791 (923)
Q Consensus 713 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l 791 (923)
++|+.|+++.|.+... +..+ +++|+.|++++|.... ++|.++..+++|+.|+|++|......+ .+
T Consensus 171 ~~L~~L~l~~n~l~~l----------~~~~--~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 236 (330)
T 1xku_A 171 KKLSYIRIADTNITTI----------PQGL--PPSLTELHLDGNKITK--VDAASLKGLNNLAKLGLSFNSISAVDNGSL 236 (330)
T ss_dssp TTCCEEECCSSCCCSC----------CSSC--CTTCSEEECTTSCCCE--ECTGGGTTCTTCCEEECCSSCCCEECTTTG
T ss_pred CCcCEEECCCCccccC----------Cccc--cccCCEEECCCCcCCc--cCHHHhcCCCCCCEEECCCCcCceeChhhc
Confidence 6777777776654321 1111 2567777777666555 445566667777777777765443333 36
Q ss_pred CCCCCccceeccCCcCceEeCccccCCCCCCCCcccccCcccceeeccccccccccccccccc-cccccCcccceeeecc
Q 039167 792 GKLPSLESLYIAGMKSVKRVGNEFLGVESDMDGSSVIAFAKLKKLTFYIMEELEEWDLGTAIK-GEIIIMPRLSSLTIWS 870 (923)
Q Consensus 792 ~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~-~~~~~lp~L~~L~l~~ 870 (923)
+.+++|++|++++|. +..++..+ ..+++|+.|.+.++ .++........+ ......+.|+.|++++
T Consensus 237 ~~l~~L~~L~L~~N~-l~~lp~~l------------~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~ 302 (330)
T 1xku_A 237 ANTPHLRELHLNNNK-LVKVPGGL------------ADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFS 302 (330)
T ss_dssp GGSTTCCEEECCSSC-CSSCCTTT------------TTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred cCCCCCCEEECCCCc-CccCChhh------------ccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeec
Confidence 667777777777665 44333221 14566666666554 333332110000 0011246666777777
Q ss_pred cccCC--CCCcCCCCCCCccEEEe
Q 039167 871 CRKLK--ALPDHLLQKSTLQKLEI 892 (923)
Q Consensus 871 c~~l~--~lp~~l~~l~sL~~L~l 892 (923)
|+... ..|..+..+++|+.+++
T Consensus 303 N~~~~~~i~~~~f~~~~~l~~l~L 326 (330)
T 1xku_A 303 NPVQYWEIQPSTFRCVYVRAAVQL 326 (330)
T ss_dssp SSSCGGGSCGGGGTTCCCGGGEEC
T ss_pred CcccccccCccccccccceeEEEe
Confidence 76422 23445566666777766
No 51
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.75 E-value=2.6e-17 Score=196.36 Aligned_cols=131 Identities=21% Similarity=0.176 Sum_probs=110.0
Q ss_pred CCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccc-cccCCCCCcEEeccCCCCccccch-hhhC
Q 039167 531 RGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPT-NIEKLLHLKYLNLANQMEIERLPE-TLCE 608 (923)
Q Consensus 531 ~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~-~i~~ 608 (923)
++++.|++++|.+..+. +..|.++++|++|+|++|. +..+|+ .|.+|++|++|+|++|. +..+|. .+++
T Consensus 52 ~~~~~LdLs~N~i~~l~-~~~f~~l~~L~~L~Ls~N~-------i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~ 122 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCE-------IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSG 122 (635)
T ss_dssp TTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCC-------CCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTT
T ss_pred cCCCEEEeeCCCCCCCC-HHHHhCCCCCCEEECCCCc-------CCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcC
Confidence 47999999999987653 5569999999999999776 777765 68999999999999998 888885 5799
Q ss_pred CCCCcEEecCCCccccccCc-cccCCCCCCEEeCCCCcccc-cCCcCCCCCCCCCcCCceEeccc
Q 039167 609 LYNLEHLNVNCCVKLRELPQ-GIGRLRKLMYLDNECTVSLR-YLPVGIGKLIRLRRVKEFVVGGG 671 (923)
Q Consensus 609 L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~-~~p~~i~~L~~L~~L~~~~~~~~ 671 (923)
|++|++|+|++|. +..+|. .+++|++|++|++++|.... .+|..++.+++|++|++..+...
T Consensus 123 L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 123 LSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp CTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 9999999999997 777775 48999999999999994322 35777889999999987765443
No 52
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.74 E-value=3.9e-17 Score=184.55 Aligned_cols=156 Identities=19% Similarity=0.242 Sum_probs=84.8
Q ss_pred cceEEEEEEecCCCCCccccccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCC
Q 039167 507 KKILHLTLAIGCGPMPIYDNIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLL 586 (923)
Q Consensus 507 ~~~~~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~ 586 (923)
..++.+.+..+.... .+. .+++|+.|++++|.+..+ +. -.++|++|++++|. +..+| .+++++
T Consensus 91 ~~L~~L~l~~n~l~~-lp~---~~~~L~~L~l~~n~l~~l--~~---~~~~L~~L~L~~n~-------l~~lp-~~~~l~ 153 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPE---LPQSLKSLLVDNNNLKAL--SD---LPPLLEYLGVSNNQ-------LEKLP-ELQNSS 153 (454)
T ss_dssp TTCSEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCC--CS---CCTTCCEEECCSSC-------CSSCC-CCTTCT
T ss_pred CCCCEEEccCCcCCc-ccc---ccCCCcEEECCCCccCcc--cC---CCCCCCEEECcCCC-------CCCCc-ccCCCC
Confidence 455666665554422 111 235667777776665432 11 11467777777554 44566 466677
Q ss_pred CCcEEeccCCCCccccchhhhCCCCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCce
Q 039167 587 HLKYLNLANQMEIERLPETLCELYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEF 666 (923)
Q Consensus 587 ~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~ 666 (923)
+|++|++++|. +..+|..+ .+|++|++++|. +..+| .++.+++|++|++++| .+..+|... ++|++|++.
T Consensus 154 ~L~~L~l~~N~-l~~lp~~~---~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~~~---~~L~~L~l~ 223 (454)
T 1jl5_A 154 FLKIIDVDNNS-LKKLPDLP---PSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNN-SLKKLPDLP---LSLESIVAG 223 (454)
T ss_dssp TCCEEECCSSC-CSCCCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSS-CCSSCCCCC---TTCCEEECC
T ss_pred CCCEEECCCCc-CcccCCCc---ccccEEECcCCc-CCcCc-cccCCCCCCEEECCCC-cCCcCCCCc---CcccEEECc
Confidence 77777777776 66666532 367777777765 55566 4667777777777666 344454432 355555554
Q ss_pred EecccCCcccccccccCCCCCCCceEeC
Q 039167 667 VVGGGYGRACSLGSLKKLNLLRDCRIRG 694 (923)
Q Consensus 667 ~~~~~~~~~~~l~~L~~L~~L~~l~i~~ 694 (923)
.+... .+..+..+++|+.+.+..
T Consensus 224 ~n~l~-----~lp~~~~l~~L~~L~l~~ 246 (454)
T 1jl5_A 224 NNILE-----ELPELQNLPFLTTIYADN 246 (454)
T ss_dssp SSCCS-----SCCCCTTCTTCCEEECCS
T ss_pred CCcCC-----cccccCCCCCCCEEECCC
Confidence 43322 122234444555544443
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.74 E-value=3.1e-17 Score=190.92 Aligned_cols=97 Identities=22% Similarity=0.218 Sum_probs=54.2
Q ss_pred CCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchhhhCCC
Q 039167 531 RGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPETLCELY 610 (923)
Q Consensus 531 ~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~ 610 (923)
++|+.|++++|.+..+ |. .+++|++|+|++|. +..+|. .+++|++|+|++|. +..+|. .+.
T Consensus 61 ~~L~~L~L~~N~l~~l--p~---~l~~L~~L~Ls~N~-------l~~lp~---~l~~L~~L~Ls~N~-l~~l~~---~l~ 121 (622)
T 3g06_A 61 AHITTLVIPDNNLTSL--PA---LPPELRTLEVSGNQ-------LTSLPV---LPPGLLELSIFSNP-LTHLPA---LPS 121 (622)
T ss_dssp TTCSEEEECSCCCSCC--CC---CCTTCCEEEECSCC-------CSCCCC---CCTTCCEEEECSCC-CCCCCC---CCT
T ss_pred CCCcEEEecCCCCCCC--CC---cCCCCCEEEcCCCc-------CCcCCC---CCCCCCEEECcCCc-CCCCCC---CCC
Confidence 5566666666655432 22 35566666666544 445554 45566666666665 555555 455
Q ss_pred CCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCC
Q 039167 611 NLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLP 651 (923)
Q Consensus 611 ~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p 651 (923)
+|++|++++|. +..+|.. +++|++|++++| .+..+|
T Consensus 122 ~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N-~l~~l~ 157 (622)
T 3g06_A 122 GLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLP 157 (622)
T ss_dssp TCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCC
T ss_pred CcCEEECCCCC-CCcCCCC---CCCCCEEECcCC-cCCCcC
Confidence 66666666665 5555543 356666666665 334444
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.73 E-value=2.1e-17 Score=177.48 Aligned_cols=80 Identities=19% Similarity=0.250 Sum_probs=57.4
Q ss_pred CcccEEeccccCCccccccccccccc-ccCCCCCcEEeccCCCCcccc---chhhhCCCCCcEEecCCCccccccCcccc
Q 039167 556 TCLRALKLEVHNERLPEDFIKEVPTN-IEKLLHLKYLNLANQMEIERL---PETLCELYNLEHLNVNCCVKLRELPQGIG 631 (923)
Q Consensus 556 ~~Lr~L~L~~~~~~~~~~~~~~lp~~-i~~l~~L~~L~L~~~~~l~~l---p~~i~~L~~L~~L~L~~~~~l~~lp~~i~ 631 (923)
+.|++|++++|. +..+|.. +.++++|++|+|++|. +..+ |..+..+++|++|++++|. +..+|..+.
T Consensus 28 ~~l~~L~L~~n~-------l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~ 98 (306)
T 2z66_A 28 SSATRLELESNK-------LQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFL 98 (306)
T ss_dssp TTCCEEECCSSC-------CCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEE
T ss_pred CCCCEEECCCCc-------cCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCCc-cccChhhcC
Confidence 567777777654 5566654 5677778888887776 5544 5667777778888887776 667777777
Q ss_pred CCCCCCEEeCCCC
Q 039167 632 RLRKLMYLDNECT 644 (923)
Q Consensus 632 ~L~~L~~L~l~~~ 644 (923)
.+++|++|++++|
T Consensus 99 ~l~~L~~L~l~~n 111 (306)
T 2z66_A 99 GLEQLEHLDFQHS 111 (306)
T ss_dssp TCTTCCEEECTTS
T ss_pred CCCCCCEEECCCC
Confidence 7778888877776
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.72 E-value=8.4e-18 Score=180.56 Aligned_cols=228 Identities=23% Similarity=0.152 Sum_probs=162.4
Q ss_pred CCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchhhhCCC
Q 039167 531 RGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPETLCELY 610 (923)
Q Consensus 531 ~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~ 610 (923)
++++.|++++|.+..+ .+..|.++++|++|++++|. -..+...|..+..+++|++|+|++|. +..+|..+..++
T Consensus 28 ~~l~~L~L~~n~l~~i-~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~ 101 (306)
T 2z66_A 28 SSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSSNG----LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLE 101 (306)
T ss_dssp TTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSC----CCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCT
T ss_pred CCCCEEECCCCccCcc-CHhHhhccccCCEEECCCCc----cCcccCcccccccccccCEEECCCCc-cccChhhcCCCC
Confidence 6899999999987653 24457899999999999776 11222335667788999999999998 888998899999
Q ss_pred CCcEEecCCCccccccCc--cccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEecccCCcccccccccCCCCCC
Q 039167 611 NLEHLNVNCCVKLRELPQ--GIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLNLLR 688 (923)
Q Consensus 611 ~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~ 688 (923)
+|++|++++|. +..+|. .+..+++|++|++++|......|..++.+++|++|++..+....
T Consensus 102 ~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------------- 164 (306)
T 2z66_A 102 QLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE---------------- 164 (306)
T ss_dssp TCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG----------------
T ss_pred CCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc----------------
Confidence 99999999987 777664 68899999999999985544556667778888877654332211
Q ss_pred CceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCcccc
Q 039167 689 DCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKNWI 768 (923)
Q Consensus 689 ~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~ 768 (923)
......+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.... +++..+
T Consensus 165 --------------~~~~~~~~~l~~L~~L~Ls~n~l~~---------~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~ 219 (306)
T 2z66_A 165 --------------NFLPDIFTELRNLTFLDLSQCQLEQ---------LSPTAFNSLSSLQVLNMSHNNFFS--LDTFPY 219 (306)
T ss_dssp --------------GEECSCCTTCTTCCEEECTTSCCCE---------ECTTTTTTCTTCCEEECTTSCCSB--CCSGGG
T ss_pred --------------ccchhHHhhCcCCCEEECCCCCcCC---------cCHHHhcCCCCCCEEECCCCccCc--cChhhc
Confidence 0001223345567777777665432 113345667788888888877766 545567
Q ss_pred cccccccEEeEeCCCCCCCCCC-CCCCC-CccceeccCCc
Q 039167 769 MSLTNLRFLGLHEWRNCEHLPP-LGKLP-SLESLYIAGMK 806 (923)
Q Consensus 769 ~~l~~L~~L~L~~~~~~~~l~~-l~~L~-~L~~L~L~~~~ 806 (923)
..+++|+.|+|++|......+. +..+| +|++|++++|+
T Consensus 220 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 7788888888888866554443 66664 78888888776
No 56
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.71 E-value=4.1e-17 Score=184.35 Aligned_cols=314 Identities=16% Similarity=0.067 Sum_probs=166.2
Q ss_pred cceEEEEEEecCCCCCccccccccCCceEEEeCCCCCCCccchHHhhcCCc-------------ccEEeccccCCccccc
Q 039167 507 KKILHLTLAIGCGPMPIYDNIEALRGLRSLLLESTKHSSVILPQLFDKLTC-------------LRALKLEVHNERLPED 573 (923)
Q Consensus 507 ~~~~~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~-------------Lr~L~L~~~~~~~~~~ 573 (923)
..++.+.+..+.. ...+..+.++++|+.|++++|.+... +|..+.+++. +++|++++|.
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~------ 82 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERN-APPGNGEQREMAVSRLRDCLDRQAHELELNNLG------ 82 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHT-SCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC------
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCccccc-CCcccccchhcchhhhhhhhccCCCEEEecCCc------
Confidence 3445555555544 33455667777777777776654322 2333444443 3667776554
Q ss_pred ccccccccccCCCCCcEEeccCCCCccccchhhhCCCCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCcC
Q 039167 574 FIKEVPTNIEKLLHLKYLNLANQMEIERLPETLCELYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPVG 653 (923)
Q Consensus 574 ~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~ 653 (923)
+..+|.. .++|++|++++|. +..+|.. +.+|++|++++|. +..+|.. .++|++|++++| .+..+| .
T Consensus 83 -l~~lp~~---~~~L~~L~l~~n~-l~~lp~~---~~~L~~L~l~~n~-l~~l~~~---~~~L~~L~L~~n-~l~~lp-~ 148 (454)
T 1jl5_A 83 -LSSLPEL---PPHLESLVASCNS-LTELPEL---PQSLKSLLVDNNN-LKALSDL---PPLLEYLGVSNN-QLEKLP-E 148 (454)
T ss_dssp -CSCCCSC---CTTCSEEECCSSC-CSSCCCC---CTTCCEEECCSSC-CSCCCSC---CTTCCEEECCSS-CCSSCC-C
T ss_pred -cccCCCC---cCCCCEEEccCCc-CCccccc---cCCCcEEECCCCc-cCcccCC---CCCCCEEECcCC-CCCCCc-c
Confidence 5555542 3567777777776 6667653 3677777777775 5555532 157788888777 455577 4
Q ss_pred CCCCCCCCcCCceEecccCCcccccccccCCCCCCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccc
Q 039167 654 IGKLIRLRRVKEFVVGGGYGRACSLGSLKKLNLLRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEED 733 (923)
Q Consensus 654 i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 733 (923)
++++++|++|++..+.... .+.. ..+|+.+.+....- ... ..+..+++|+.|++++|.+...+
T Consensus 149 ~~~l~~L~~L~l~~N~l~~-lp~~------~~~L~~L~L~~n~l-~~l-----~~~~~l~~L~~L~l~~N~l~~l~---- 211 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKK-LPDL------PPSLEFIAAGNNQL-EEL-----PELQNLPFLTAIYADNNSLKKLP---- 211 (454)
T ss_dssp CTTCTTCCEEECCSSCCSC-CCCC------CTTCCEEECCSSCC-SSC-----CCCTTCTTCCEEECCSSCCSSCC----
T ss_pred cCCCCCCCEEECCCCcCcc-cCCC------cccccEEECcCCcC-CcC-----ccccCCCCCCEEECCCCcCCcCC----
Confidence 7777777777766554332 1111 12444444443211 111 13566777777877777643210
Q ss_pred hHHHHhhcCCCCCCCCcEEEeeecCCCCCcCcccccccccccEEeEeCCCCCCCCCCCCCCCCccceeccCCcCceEeCc
Q 039167 734 EDERLLEALGPPPNLKELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRNCEHLPPLGKLPSLESLYIAGMKSVKRVGN 813 (923)
Q Consensus 734 ~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~~ 813 (923)
..+++|+.|++++|.... + |. +..+++|+.|++++|... .+|. .+++|+.|++++|. +..++.
T Consensus 212 ---------~~~~~L~~L~l~~n~l~~--l-p~-~~~l~~L~~L~l~~N~l~-~l~~--~~~~L~~L~l~~N~-l~~l~~ 274 (454)
T 1jl5_A 212 ---------DLPLSLESIVAGNNILEE--L-PE-LQNLPFLTTIYADNNLLK-TLPD--LPPSLEALNVRDNY-LTDLPE 274 (454)
T ss_dssp ---------CCCTTCCEEECCSSCCSS--C-CC-CTTCTTCCEEECCSSCCS-SCCS--CCTTCCEEECCSSC-CSCCCC
T ss_pred ---------CCcCcccEEECcCCcCCc--c-cc-cCCCCCCCEEECCCCcCC-cccc--cccccCEEECCCCc-ccccCc
Confidence 113477888887777665 6 43 667788888888877443 3443 24677888887765 333332
Q ss_pred cccCCCCCCCCcccccCcccceeecccccccccc----------ccccccccccccC-cccceeeecccccCCCCCcCCC
Q 039167 814 EFLGVESDMDGSSVIAFAKLKKLTFYIMEELEEW----------DLGTAIKGEIIIM-PRLSSLTIWSCRKLKALPDHLL 882 (923)
Q Consensus 814 ~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~----------~~~~~~~~~~~~l-p~L~~L~l~~c~~l~~lp~~l~ 882 (923)
.+++|+.|.+.++ .++.. .+....-..+..+ ++|+.|++++|. +..+|..
T Consensus 275 ---------------~~~~L~~L~ls~N-~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~-l~~lp~~-- 335 (454)
T 1jl5_A 275 ---------------LPQSLTFLDVSEN-IFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK-LIELPAL-- 335 (454)
T ss_dssp ---------------CCTTCCEEECCSS-CCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSC-CSCCCCC--
T ss_pred ---------------ccCcCCEEECcCC-ccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCc-ccccccc--
Confidence 2345555555443 12211 0000000012233 589999999885 5667765
Q ss_pred CCCCccEEEeccCCc
Q 039167 883 QKSTLQKLEIWGGCH 897 (923)
Q Consensus 883 ~l~sL~~L~l~~~c~ 897 (923)
+++|+.|++ ++|.
T Consensus 336 -~~~L~~L~L-~~N~ 348 (454)
T 1jl5_A 336 -PPRLERLIA-SFNH 348 (454)
T ss_dssp -CTTCCEEEC-CSSC
T ss_pred -CCcCCEEEC-CCCc
Confidence 578999999 6653
No 57
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.71 E-value=2.7e-20 Score=212.76 Aligned_cols=364 Identities=18% Similarity=0.122 Sum_probs=201.9
Q ss_pred ceEEEEEEecCCCCCccc-cccccCCceEEEeCCCCCCCc---cchHHhhcCCcccEEeccccCCccccccccc-ccccc
Q 039167 508 KILHLTLAIGCGPMPIYD-NIEALRGLRSLLLESTKHSSV---ILPQLFDKLTCLRALKLEVHNERLPEDFIKE-VPTNI 582 (923)
Q Consensus 508 ~~~~l~l~~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~---~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~-lp~~i 582 (923)
.++++.+..+........ .+..+++|++|++++|.+... .++..+..+++|++|++++|. +.. .+..+
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-------l~~~~~~~l 76 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-------LGDVGVHCV 76 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-------CHHHHHHHH
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-------CChHHHHHH
Confidence 456666665554221112 256778888888888876543 345567778888888888765 222 11122
Q ss_pred -cCCC----CCcEEeccCCCCcc-----ccchhhhCCCCCcEEecCCCccccc-cCcccc-----CCCCCCEEeCCCCcc
Q 039167 583 -EKLL----HLKYLNLANQMEIE-----RLPETLCELYNLEHLNVNCCVKLRE-LPQGIG-----RLRKLMYLDNECTVS 646 (923)
Q Consensus 583 -~~l~----~L~~L~L~~~~~l~-----~lp~~i~~L~~L~~L~L~~~~~l~~-lp~~i~-----~L~~L~~L~l~~~~~ 646 (923)
..+. +|++|+|++|. +. .+|..+.++++|++|++++|. +.. .+..+. .+++|++|++++|..
T Consensus 77 ~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 154 (461)
T 1z7x_W 77 LQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSL 154 (461)
T ss_dssp HHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCC
Confidence 2233 68888888887 55 567778888888888888887 432 122222 256788888888843
Q ss_pred cc----cCCcCCCCCCCCCcCCceEecccCCcccccc-ccc-CCCCCCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEE
Q 039167 647 LR----YLPVGIGKLIRLRRVKEFVVGGGYGRACSLG-SLK-KLNLLRDCRIRGLGDVSDVDEARRAELEKKKNLFELKL 720 (923)
Q Consensus 647 l~----~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~-~L~-~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l 720 (923)
.. .++..+..+++|++|++..+.........+. .+. .+++|+.+.+....-...........+..+++|+.|++
T Consensus 155 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 234 (461)
T 1z7x_W 155 SAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 234 (461)
T ss_dssp BGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEEC
T ss_pred CHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEec
Confidence 22 2344556677888877765543221011111 111 23456666665543322222334555667788888888
Q ss_pred EEcCCCCCCCccchHHHHhhc-CCCCCCCCcEEEeeecCCCCC---cCcccccccccccEEeEeCCCCCCC----CCC--
Q 039167 721 HFDQAGRRENEEDEDERLLEA-LGPPPNLKELWINKYRGKRNV---VPKNWIMSLTNLRFLGLHEWRNCEH----LPP-- 790 (923)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~l~~-l~~~~~L~~L~l~~~~~~~~~---~~p~~~~~l~~L~~L~L~~~~~~~~----l~~-- 790 (923)
++|.+.. .....+... ...+++|++|++++|...... + +..+..+++|+.|+|++|..... +..
T Consensus 235 s~n~l~~-----~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 308 (461)
T 1z7x_W 235 GSNKLGD-----VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL-CRVLRAKESLKELSLAGNELGDEGARLLCETL 308 (461)
T ss_dssp CSSBCHH-----HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH-HHHHHHCTTCCEEECTTCCCHHHHHHHHHHHH
T ss_pred cCCcCCh-----HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHH-HHHHhhCCCcceEECCCCCCchHHHHHHHHHh
Confidence 8776421 111112222 335778888888877654311 2 33455678888888888753221 111
Q ss_pred CCCCCCccceeccCCcCceEeCccccCCCCCCCCcccccCcccceeeccccccccccccccccccccc-cCcccceeeec
Q 039167 791 LGKLPSLESLYIAGMKSVKRVGNEFLGVESDMDGSSVIAFAKLKKLTFYIMEELEEWDLGTAIKGEII-IMPRLSSLTIW 869 (923)
Q Consensus 791 l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~-~lp~L~~L~l~ 869 (923)
....++|++|++++|. +...+...... ....+++|+.|.+.++ .+....... +...+. .+++|++|+++
T Consensus 309 ~~~~~~L~~L~L~~n~-l~~~~~~~l~~-------~l~~~~~L~~L~Ls~n-~i~~~~~~~-l~~~l~~~~~~L~~L~L~ 378 (461)
T 1z7x_W 309 LEPGCQLESLWVKSCS-FTAACCSHFSS-------VLAQNRFLLELQISNN-RLEDAGVRE-LCQGLGQPGSVLRVLWLA 378 (461)
T ss_dssp TSTTCCCCEEECTTSC-CBGGGHHHHHH-------HHHHCSSCCEEECCSS-BCHHHHHHH-HHHHHTSTTCCCCEEECT
T ss_pred ccCCccceeeEcCCCC-CchHHHHHHHH-------HHhhCCCccEEEccCC-ccccccHHH-HHHHHcCCCCceEEEECC
Confidence 1223678888888776 32211100000 0113467777776655 333221100 000111 15677778887
Q ss_pred ccccCC----CCCcCCCCCCCccEEEeccCCc
Q 039167 870 SCRKLK----ALPDHLLQKSTLQKLEIWGGCH 897 (923)
Q Consensus 870 ~c~~l~----~lp~~l~~l~sL~~L~l~~~c~ 897 (923)
+|..-. .+|..+..+++|++|++ ++|+
T Consensus 379 ~n~i~~~~~~~l~~~l~~~~~L~~L~l-~~N~ 409 (461)
T 1z7x_W 379 DCDVSDSSCSSLAATLLANHSLRELDL-SNNC 409 (461)
T ss_dssp TSCCCHHHHHHHHHHHHHCCCCCEEEC-CSSS
T ss_pred CCCCChhhHHHHHHHHHhCCCccEEEC-CCCC
Confidence 775322 45666666777777777 6664
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.71 E-value=4.1e-17 Score=185.41 Aligned_cols=222 Identities=19% Similarity=0.199 Sum_probs=164.4
Q ss_pred CCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCccccccccccc-ccccCCCCCcEEeccCCCCccccchh-hhC
Q 039167 531 RGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVP-TNIEKLLHLKYLNLANQMEIERLPET-LCE 608 (923)
Q Consensus 531 ~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~-i~~ 608 (923)
++++.|++++|.+..+. +..|.++++|++|+|++|. +..++ ..+.++.+|++|+|++|. +..+|.. +..
T Consensus 75 ~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~n~-------i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 145 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQ-ADTFRHLHHLEVLQLGRNS-------IRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEY 145 (452)
T ss_dssp TTCSEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-------CCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSS
T ss_pred CCccEEECcCCcCceEC-HHHcCCCCCCCEEECCCCc-------cCCcChhhccCcccCCEEECCCCc-CCccChhhhcc
Confidence 57889999998876643 4558889999999999775 55554 668889999999999998 7777754 788
Q ss_pred CCCCcEEecCCCccccccCc-cccCCCCCCEEeCCCCcccccCCc-CCCCCCCCCcCCceEecccCCcccccccccCCCC
Q 039167 609 LYNLEHLNVNCCVKLRELPQ-GIGRLRKLMYLDNECTVSLRYLPV-GIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLNL 686 (923)
Q Consensus 609 L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~ 686 (923)
+++|++|+|++|. +..+|. .+.++++|++|++++|..+..+|. .+..+++|+.|++..+.... ++
T Consensus 146 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--------~~---- 212 (452)
T 3zyi_A 146 LSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--------MP---- 212 (452)
T ss_dssp CTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS--------CC----
T ss_pred cCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc--------cc----
Confidence 9999999999987 767665 578899999999988777777765 36777777777654332211 10
Q ss_pred CCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCcc
Q 039167 687 LRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKN 766 (923)
Q Consensus 687 L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~ 766 (923)
.+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.... +++.
T Consensus 213 ---------------------~~~~l~~L~~L~Ls~N~l~~---------~~~~~~~~l~~L~~L~L~~n~l~~--~~~~ 260 (452)
T 3zyi_A 213 ---------------------NLTPLVGLEELEMSGNHFPE---------IRPGSFHGLSSLKKLWVMNSQVSL--IERN 260 (452)
T ss_dssp ---------------------CCTTCTTCCEEECTTSCCSE---------ECGGGGTTCTTCCEEECTTSCCCE--ECTT
T ss_pred ---------------------cccccccccEEECcCCcCcc---------cCcccccCccCCCEEEeCCCcCce--ECHH
Confidence 13345677788887776432 123456777889999998888776 6677
Q ss_pred cccccccccEEeEeCCCCCCCCCC-CCCCCCccceeccCCc
Q 039167 767 WIMSLTNLRFLGLHEWRNCEHLPP-LGKLPSLESLYIAGMK 806 (923)
Q Consensus 767 ~~~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~ 806 (923)
.+..+++|+.|+|++|......+. +..+++|+.|+|++|+
T Consensus 261 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 261 AFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred HhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 788889999999998855433333 6788999999998886
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.70 E-value=5.4e-17 Score=183.68 Aligned_cols=222 Identities=19% Similarity=0.207 Sum_probs=161.2
Q ss_pred CCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCccccccccccc-ccccCCCCCcEEeccCCCCccccch-hhhC
Q 039167 531 RGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVP-TNIEKLLHLKYLNLANQMEIERLPE-TLCE 608 (923)
Q Consensus 531 ~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~-~i~~ 608 (923)
++++.|++++|.+..+. +..|.++++|++|+|++|. +..++ ..+.++++|++|+|++|. +..+|. .+..
T Consensus 64 ~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~n~-------i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 134 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIK-VNSFKHLRHLEILQLSRNH-------IRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVY 134 (440)
T ss_dssp TTCSEEECCSCCCCEEC-TTTTSSCSSCCEEECCSSC-------CCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCS
T ss_pred CCCcEEEccCCcCCeeC-HHHhhCCCCCCEEECCCCc-------CCccChhhccCCccCCEEECCCCc-CCeeCHhHhhc
Confidence 57888888888876543 4457888888888888765 55554 567888888888888887 777765 5788
Q ss_pred CCCCcEEecCCCccccccCc-cccCCCCCCEEeCCCCcccccCCc-CCCCCCCCCcCCceEecccCCcccccccccCCCC
Q 039167 609 LYNLEHLNVNCCVKLRELPQ-GIGRLRKLMYLDNECTVSLRYLPV-GIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLNL 686 (923)
Q Consensus 609 L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~ 686 (923)
+++|++|+|++|. +..+|. .+..+++|++|++++|..+..+|. .+.++++|++|++..+... .++
T Consensus 135 l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~--------~~~---- 201 (440)
T 3zyj_A 135 LSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR--------EIP---- 201 (440)
T ss_dssp CSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS--------SCC----
T ss_pred cccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc--------ccc----
Confidence 8888888888887 666654 577888888888888766666665 4677777777765433221 111
Q ss_pred CCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCcc
Q 039167 687 LRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKN 766 (923)
Q Consensus 687 L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~ 766 (923)
.+..+++|+.|++++|.+.. .....+..+++|+.|++++|.... +++.
T Consensus 202 ---------------------~~~~l~~L~~L~Ls~N~l~~---------~~~~~~~~l~~L~~L~L~~n~l~~--~~~~ 249 (440)
T 3zyj_A 202 ---------------------NLTPLIKLDELDLSGNHLSA---------IRPGSFQGLMHLQKLWMIQSQIQV--IERN 249 (440)
T ss_dssp ---------------------CCTTCSSCCEEECTTSCCCE---------ECTTTTTTCTTCCEEECTTCCCCE--ECTT
T ss_pred ---------------------ccCCCcccCEEECCCCccCc---------cChhhhccCccCCEEECCCCceeE--EChh
Confidence 13345677788887776432 123456778899999998888777 6677
Q ss_pred cccccccccEEeEeCCCCCCCCCC-CCCCCCccceeccCCc
Q 039167 767 WIMSLTNLRFLGLHEWRNCEHLPP-LGKLPSLESLYIAGMK 806 (923)
Q Consensus 767 ~~~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~ 806 (923)
++..+++|+.|+|++|......+. +..+++|+.|+|++|+
T Consensus 250 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 250 AFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp SSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred hhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 888899999999999865443333 7788999999999887
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.69 E-value=1.2e-16 Score=186.13 Aligned_cols=256 Identities=20% Similarity=0.189 Sum_probs=153.9
Q ss_pred CCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchhhhCCC
Q 039167 531 RGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPETLCELY 610 (923)
Q Consensus 531 ~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~ 610 (923)
.++++|+++++.+..+ |..+. ++|++|++++|. +..+|. .+++|++|+|++|. ++.+|. .++
T Consensus 40 ~~l~~L~ls~n~L~~l--p~~l~--~~L~~L~L~~N~-------l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~ 101 (622)
T 3g06_A 40 NGNAVLNVGESGLTTL--PDCLP--AHITTLVIPDNN-------LTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPP 101 (622)
T ss_dssp HCCCEEECCSSCCSCC--CSCCC--TTCSEEEECSCC-------CSCCCC---CCTTCCEEEECSCC-CSCCCC---CCT
T ss_pred CCCcEEEecCCCcCcc--ChhhC--CCCcEEEecCCC-------CCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCC
Confidence 4578888888887643 33232 789999999775 677776 57899999999998 888987 789
Q ss_pred CCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEecccCCcccccccccCCCCCCCc
Q 039167 611 NLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLNLLRDC 690 (923)
Q Consensus 611 ~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l 690 (923)
+|++|++++|. +..+|. .+++|++|++++| .+..+|.. +++|++|++..+.... ++.
T Consensus 102 ~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N-~l~~lp~~---l~~L~~L~Ls~N~l~~--------l~~------- 158 (622)
T 3g06_A 102 GLLELSIFSNP-LTHLPA---LPSGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDNQLAS--------LPA------- 158 (622)
T ss_dssp TCCEEEECSCC-CCCCCC---CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSCCSC--------CCC-------
T ss_pred CCCEEECcCCc-CCCCCC---CCCCcCEEECCCC-CCCcCCCC---CCCCCEEECcCCcCCC--------cCC-------
Confidence 99999999987 888887 6788999999988 56777764 3677777665443221 100
Q ss_pred eEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCcccccc
Q 039167 691 RIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKNWIMS 770 (923)
Q Consensus 691 ~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~ 770 (923)
...+|+.|.++.|.+.. ++ ..+++|+.|++++|.... + |. .
T Consensus 159 --------------------~~~~L~~L~L~~N~l~~----------l~---~~~~~L~~L~Ls~N~l~~--l-~~---~ 199 (622)
T 3g06_A 159 --------------------LPSELCKLWAYNNQLTS----------LP---MLPSGLQELSVSDNQLAS--L-PT---L 199 (622)
T ss_dssp --------------------CCTTCCEEECCSSCCSC----------CC---CCCTTCCEEECCSSCCSC--C-CC---C
T ss_pred --------------------ccCCCCEEECCCCCCCC----------Cc---ccCCCCcEEECCCCCCCC--C-CC---c
Confidence 11234455555444321 00 224555566665555444 4 22 2
Q ss_pred cccccEEeEeCCCCCCCCCCCCCCCCccceeccCCcCceEeCccccCCCCCCCCcccccCcccceeeccccccccccccc
Q 039167 771 LTNLRFLGLHEWRNCEHLPPLGKLPSLESLYIAGMKSVKRVGNEFLGVESDMDGSSVIAFAKLKKLTFYIMEELEEWDLG 850 (923)
Q Consensus 771 l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~ 850 (923)
+++|+.|++++|.. ..+|. .+++|+.|++++|. ++.++ ..+++|+.|.+.++ .++.+.
T Consensus 200 ~~~L~~L~L~~N~l-~~l~~--~~~~L~~L~Ls~N~-L~~lp---------------~~l~~L~~L~Ls~N-~L~~lp-- 257 (622)
T 3g06_A 200 PSELYKLWAYNNRL-TSLPA--LPSGLKELIVSGNR-LTSLP---------------VLPSELKELMVSGN-RLTSLP-- 257 (622)
T ss_dssp CTTCCEEECCSSCC-SSCCC--CCTTCCEEECCSSC-CSCCC---------------CCCTTCCEEECCSS-CCSCCC--
T ss_pred cchhhEEECcCCcc-cccCC--CCCCCCEEEccCCc-cCcCC---------------CCCCcCcEEECCCC-CCCcCC--
Confidence 34556666655532 23332 23556666665553 33222 13455555555543 232211
Q ss_pred cccccccccCcccceeeecccccCCCCCcCCCCCCCccEEEeccCCc
Q 039167 851 TAIKGEIIIMPRLSSLTIWSCRKLKALPDHLLQKSTLQKLEIWGGCH 897 (923)
Q Consensus 851 ~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~~c~ 897 (923)
. .+++|+.|++++| .+..+|..+.++++|+.|++ ++|+
T Consensus 258 ----~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L-~~N~ 295 (622)
T 3g06_A 258 ----M---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNL-EGNP 295 (622)
T ss_dssp ----C---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEEC-CSCC
T ss_pred ----c---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEe-cCCC
Confidence 1 3456666666666 34456655666666666666 5554
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.69 E-value=3.1e-16 Score=177.46 Aligned_cols=111 Identities=18% Similarity=0.256 Sum_probs=58.0
Q ss_pred ccccccccccEEeEeCCCCCCCCCCCCCCCCccceeccCCcCceEeCccccCCCCCCCCcccccCcccceeecccccccc
Q 039167 766 NWIMSLTNLRFLGLHEWRNCEHLPPLGKLPSLESLYIAGMKSVKRVGNEFLGVESDMDGSSVIAFAKLKKLTFYIMEELE 845 (923)
Q Consensus 766 ~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~ 845 (923)
..+..+++|+.|+|++|. ...+|.+..+++|+.|+|++|. +..++...+ ..+++|+.|.+.++
T Consensus 179 ~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-----------~~l~~L~~L~L~~n---- 241 (440)
T 3zyj_A 179 GAFEGLSNLRYLNLAMCN-LREIPNLTPLIKLDELDLSGNH-LSAIRPGSF-----------QGLMHLQKLWMIQS---- 241 (440)
T ss_dssp TTTTTCSSCCEEECTTSC-CSSCCCCTTCSSCCEEECTTSC-CCEECTTTT-----------TTCTTCCEEECTTC----
T ss_pred chhhcccccCeecCCCCc-CccccccCCCcccCEEECCCCc-cCccChhhh-----------ccCccCCEEECCCC----
Confidence 344455556666665552 3345555566666666666554 333322111 13445555544433
Q ss_pred ccccccccccccccCcccceeeecccccCCCCCc-CCCCCCCccEEEeccCCc
Q 039167 846 EWDLGTAIKGEIIIMPRLSSLTIWSCRKLKALPD-HLLQKSTLQKLEIWGGCH 897 (923)
Q Consensus 846 ~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~lp~-~l~~l~sL~~L~l~~~c~ 897 (923)
.+.+..+..+..+++|+.|+|++|. +..+|. .+..+++|+.|++ .++|
T Consensus 242 --~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L-~~Np 290 (440)
T 3zyj_A 242 --QIQVIERNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHL-HHNP 290 (440)
T ss_dssp --CCCEECTTSSTTCTTCCEEECTTSC-CCCCCTTTTSSCTTCCEEEC-CSSC
T ss_pred --ceeEEChhhhcCCCCCCEEECCCCC-CCccChhHhccccCCCEEEc-CCCC
Confidence 2222223345566777777777774 444443 3566777777777 4443
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.69 E-value=5.5e-17 Score=172.18 Aligned_cols=219 Identities=19% Similarity=0.130 Sum_probs=123.8
Q ss_pred eEEEeCCCCCCCccchHHhhcCCcccEEeccccCCccccccccccc-ccccCCCCCcEEeccCCCCcccc-chhhhCCCC
Q 039167 534 RSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVP-TNIEKLLHLKYLNLANQMEIERL-PETLCELYN 611 (923)
Q Consensus 534 r~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~l~~l-p~~i~~L~~ 611 (923)
++++++++.+..+ |. .-.+.|++|++++|. +..+| ..+..+++|++|+|++|. +..+ |..++.+++
T Consensus 14 ~~~~c~~~~l~~i--p~--~~~~~l~~L~l~~n~-------i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~ 81 (285)
T 1ozn_A 14 VTTSCPQQGLQAV--PV--GIPAASQRIFLHGNR-------ISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLAL 81 (285)
T ss_dssp CEEECCSSCCSSC--CT--TCCTTCSEEECTTSC-------CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTT
T ss_pred eEEEcCcCCcccC--Cc--CCCCCceEEEeeCCc-------CCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccC
Confidence 4455555444332 21 223566777776554 44444 346666777777777766 5544 556667777
Q ss_pred CcEEecCCCcccccc-CccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEecccCCcccccccccCCCCCCCc
Q 039167 612 LEHLNVNCCVKLREL-PQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLNLLRDC 690 (923)
Q Consensus 612 L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l 690 (923)
|++|++++|..+..+ |..+..+++|++|++++|......|..++.+++|++|++..+.... +
T Consensus 82 L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------~--------- 144 (285)
T 1ozn_A 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA--------L--------- 144 (285)
T ss_dssp CCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC--------C---------
T ss_pred CCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc--------c---------
Confidence 777777776545554 4556667777777777663322234445555666555443221110 0
Q ss_pred eEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCcccccc
Q 039167 691 RIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKNWIMS 770 (923)
Q Consensus 691 ~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~ 770 (923)
+ ...+..+++|+.|++++|.+.. .....+..+++|+.|++++|.... ++|.++..
T Consensus 145 --------~------~~~~~~l~~L~~L~l~~n~l~~---------~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~ 199 (285)
T 1ozn_A 145 --------P------DDTFRDLGNLTHLFLHGNRISS---------VPERAFRGLHSLDRLLLHQNRVAH--VHPHAFRD 199 (285)
T ss_dssp --------C------TTTTTTCTTCCEEECCSSCCCE---------ECTTTTTTCTTCCEEECCSSCCCE--ECTTTTTT
T ss_pred --------C------HhHhccCCCccEEECCCCcccc---------cCHHHhcCccccCEEECCCCcccc--cCHhHccC
Confidence 0 0112334556666666554321 011234556777778877777665 54666777
Q ss_pred cccccEEeEeCCCCCCCCCC-CCCCCCccceeccCCc
Q 039167 771 LTNLRFLGLHEWRNCEHLPP-LGKLPSLESLYIAGMK 806 (923)
Q Consensus 771 l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~ 806 (923)
+++|+.|+|++|......+. +..+++|+.|++++|+
T Consensus 200 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred cccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 77788888877754432222 6677777777777766
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.69 E-value=9.8e-18 Score=180.73 Aligned_cols=121 Identities=17% Similarity=0.121 Sum_probs=72.4
Q ss_pred cccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchhhh
Q 039167 528 EALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPETLC 607 (923)
Q Consensus 528 ~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~ 607 (923)
..+++|+.|++++|.+... .+..|..+++|++|++++|. +..++. +..+++|++|++++|. +..+|.
T Consensus 31 ~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~-------l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~~--- 97 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNV-------LYETLD-LESLSTLRTLDLNNNY-VQELLV--- 97 (317)
T ss_dssp TTGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSC-------CEEEEE-ETTCTTCCEEECCSSE-EEEEEE---
T ss_pred ccCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCc-------CCcchh-hhhcCCCCEEECcCCc-cccccC---
Confidence 3445677777777766553 24456777777777777654 444433 6667777777777776 665553
Q ss_pred CCCCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCc
Q 039167 608 ELYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKE 665 (923)
Q Consensus 608 ~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~ 665 (923)
+++|++|++++|. +..+|.. .+++|++|++++|......|..++.+++|++|++
T Consensus 98 -~~~L~~L~l~~n~-l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L 151 (317)
T 3o53_A 98 -GPSIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151 (317)
T ss_dssp -CTTCCEEECCSSC-CSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEEC
T ss_pred -CCCcCEEECCCCc-cCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEEC
Confidence 3677777777765 5555432 3566777777776332222334555555555544
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.69 E-value=3.8e-16 Score=177.35 Aligned_cols=112 Identities=21% Similarity=0.235 Sum_probs=65.3
Q ss_pred cccccccccccEEeEeCCCCCCCCCCCCCCCCccceeccCCcCceEeCccccCCCCCCCCcccccCcccceeeccccccc
Q 039167 765 KNWIMSLTNLRFLGLHEWRNCEHLPPLGKLPSLESLYIAGMKSVKRVGNEFLGVESDMDGSSVIAFAKLKKLTFYIMEEL 844 (923)
Q Consensus 765 p~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L 844 (923)
+..+..+++|+.|+|++|. ...+|.+..+++|+.|+|++|. +..++...+ ..+++|+.|.+.++
T Consensus 189 ~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-----------~~l~~L~~L~L~~n--- 252 (452)
T 3zyi_A 189 EGAFEGLFNLKYLNLGMCN-IKDMPNLTPLVGLEELEMSGNH-FPEIRPGSF-----------HGLSSLKKLWVMNS--- 252 (452)
T ss_dssp TTTTTTCTTCCEEECTTSC-CSSCCCCTTCTTCCEEECTTSC-CSEECGGGG-----------TTCTTCCEEECTTS---
T ss_pred hhhccCCCCCCEEECCCCc-ccccccccccccccEEECcCCc-CcccCcccc-----------cCccCCCEEEeCCC---
Confidence 3345566666666666663 3345666666777777777665 443332211 14556666655543
Q ss_pred cccccccccccccccCcccceeeecccccCCCCCc-CCCCCCCccEEEeccCCc
Q 039167 845 EEWDLGTAIKGEIIIMPRLSSLTIWSCRKLKALPD-HLLQKSTLQKLEIWGGCH 897 (923)
Q Consensus 845 ~~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~lp~-~l~~l~sL~~L~l~~~c~ 897 (923)
.+.+..+..+..+++|+.|+|++|. +..+|. .+..+++|+.|++ .++|
T Consensus 253 ---~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L-~~Np 301 (452)
T 3zyi_A 253 ---QVSLIERNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHL-HHNP 301 (452)
T ss_dssp ---CCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEEC-CSSC
T ss_pred ---cCceECHHHhcCCCCCCEEECCCCc-CCccChHHhccccCCCEEEc-cCCC
Confidence 2333333455677888888888874 455554 4566788888888 5544
No 65
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.68 E-value=2.5e-17 Score=180.67 Aligned_cols=251 Identities=16% Similarity=0.117 Sum_probs=181.4
Q ss_pred CCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccc-cccccCCCCCcEEeccCCCCccccchh-hhC
Q 039167 531 RGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEV-PTNIEKLLHLKYLNLANQMEIERLPET-LCE 608 (923)
Q Consensus 531 ~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~-i~~ 608 (923)
++|++|++++|.+..+. +..|.++++|++|++++|. +..+ |..++++++|++|+|++|. +..+|.. +++
T Consensus 52 ~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~ 122 (353)
T 2z80_A 52 EAVKSLDLSNNRITYIS-NSDLQRCVNLQALVLTSNG-------INTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKP 122 (353)
T ss_dssp TTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTSC-------CCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTT
T ss_pred ccCcEEECCCCcCcccC-HHHhccCCCCCEEECCCCc-------cCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCC
Confidence 58999999999877643 4458899999999999776 5555 4568999999999999998 8888876 899
Q ss_pred CCCCcEEecCCCccccccCc--cccCCCCCCEEeCCCCcccccC-CcCCCCCCCCCcCCceEecccCCcccccccccCCC
Q 039167 609 LYNLEHLNVNCCVKLRELPQ--GIGRLRKLMYLDNECTVSLRYL-PVGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLN 685 (923)
Q Consensus 609 L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~-p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~ 685 (923)
+++|++|++++|. +..+|. .+..+++|++|++++|..+..+ |..++.+++|++|++..+..... ....+..++
T Consensus 123 l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~l~ 198 (353)
T 2z80_A 123 LSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY---EPKSLKSIQ 198 (353)
T ss_dssp CTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE---CTTTTTTCS
T ss_pred CccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc---CHHHHhccc
Confidence 9999999999997 888887 6889999999999998555555 46788999999998877655432 123345556
Q ss_pred CCCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCC---C
Q 039167 686 LLRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRN---V 762 (923)
Q Consensus 686 ~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~---~ 762 (923)
+|+.+.+....- ..... ..+..+++|+.|++++|.+...... .+......+.++.+++.++..... .
T Consensus 199 ~L~~L~l~~n~l-~~~~~---~~~~~~~~L~~L~L~~n~l~~~~~~------~l~~~~~~~~l~~l~L~~~~l~~~~l~~ 268 (353)
T 2z80_A 199 NVSHLILHMKQH-ILLLE---IFVDVTSSVECLELRDTDLDTFHFS------ELSTGETNSLIKKFTFRNVKITDESLFQ 268 (353)
T ss_dssp EEEEEEEECSCS-TTHHH---HHHHHTTTEEEEEEESCBCTTCCCC------------CCCCCCEEEEESCBCCHHHHHH
T ss_pred cCCeecCCCCcc-ccchh---hhhhhcccccEEECCCCcccccccc------ccccccccchhhccccccccccCcchhh
Confidence 666666665432 22221 2233467899999998876542211 111223456777788876654321 1
Q ss_pred cCcccccccccccEEeEeCCCCCCCCCC--CCCCCCccceeccCCc
Q 039167 763 VPKNWIMSLTNLRFLGLHEWRNCEHLPP--LGKLPSLESLYIAGMK 806 (923)
Q Consensus 763 ~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~L~~L~~L~L~~~~ 806 (923)
+ |.++..+++|+.|+|++|... .+|. ++.+++|++|++++|+
T Consensus 269 l-~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 269 V-MKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp H-HHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred h-HHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCC
Confidence 3 566778899999999998655 5555 5889999999999887
No 66
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.68 E-value=5.7e-18 Score=200.13 Aligned_cols=332 Identities=15% Similarity=0.068 Sum_probs=181.7
Q ss_pred ccCCceEEEeCCCCCCCcc---chHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchh
Q 039167 529 ALRGLRSLLLESTKHSSVI---LPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPET 605 (923)
Q Consensus 529 ~~~~Lr~L~l~~~~~~~~~---l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~ 605 (923)
.+++|++|++++|.+.... ++..+..++.|++|++++|... ......++..+.++++|++|++++|. +..+|..
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~--~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~ 238 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFA--KISPKDLETIARNCRSLVSVKVGDFE-ILELVGF 238 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCS--SCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCC--ccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHH
Confidence 5677777877777643322 3445567777788877766510 01123445555667778888887776 6677777
Q ss_pred hhCCCCCcEEecCCCccc---cccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEecccCCccccc-ccc
Q 039167 606 LCELYNLEHLNVNCCVKL---RELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVGGGYGRACSL-GSL 681 (923)
Q Consensus 606 i~~L~~L~~L~L~~~~~l---~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l-~~L 681 (923)
+.++++|+.|+++++... ...+..+..+++|++|+++++ ....+|..+..+++|++|++..+.... ..+ .-+
T Consensus 239 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~---~~~~~~~ 314 (592)
T 3ogk_B 239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLET---EDHCTLI 314 (592)
T ss_dssp HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCH---HHHHHHH
T ss_pred HhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCH---HHHHHHH
Confidence 777778888877654322 233445666777777777664 344566666667777777665444211 111 223
Q ss_pred cCCCCCCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEE----------cCCCCCCCccchHHHHhhcCCCCCCCCcE
Q 039167 682 KKLNLLRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHF----------DQAGRRENEEDEDERLLEALGPPPNLKEL 751 (923)
Q Consensus 682 ~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~----------~~~~~~~~~~~~~~~~l~~l~~~~~L~~L 751 (923)
..+++|+.|.+.. .+ ...........+++|+.|+++. +.. .....+......+++|++|
T Consensus 315 ~~~~~L~~L~L~~--~~--~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~-------~~~~~~~~l~~~~~~L~~L 383 (592)
T 3ogk_B 315 QKCPNLEVLETRN--VI--GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGL-------VSQRGLIALAQGCQELEYM 383 (592)
T ss_dssp TTCTTCCEEEEEG--GG--HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCC-------CCHHHHHHHHHHCTTCSEE
T ss_pred HhCcCCCEEeccC--cc--CHHHHHHHHHhCCCCCEEEeecCccccccccccCc-------cCHHHHHHHHhhCccCeEE
Confidence 5556666666652 11 1122233334567777777773 210 1112222223345777777
Q ss_pred EEeeecCCCCCcCccccc-ccccccEEeEeCCC---CCCCCCC-------CCCCCCccceeccCCcC-ceEeCccccCCC
Q 039167 752 WINKYRGKRNVVPKNWIM-SLTNLRFLGLHEWR---NCEHLPP-------LGKLPSLESLYIAGMKS-VKRVGNEFLGVE 819 (923)
Q Consensus 752 ~l~~~~~~~~~~~p~~~~-~l~~L~~L~L~~~~---~~~~l~~-------l~~L~~L~~L~L~~~~~-l~~~~~~~~~~~ 819 (923)
++..+.... ..+..+. .+++|+.|++++|. .....|. +..+++|+.|+++.|.+ +...+....
T Consensus 384 ~l~~~~l~~--~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~--- 458 (592)
T 3ogk_B 384 AVYVSDITN--ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI--- 458 (592)
T ss_dssp EEEESCCCH--HHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH---
T ss_pred EeecCCccH--HHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH---
Confidence 775544333 1122333 37778888876432 2332211 34477777777765542 111000000
Q ss_pred CCCCCcccccCcccceeeccccccccccccccccccccccCcccceeeecccccCCC--CCcCCCCCCCccEEEeccCCc
Q 039167 820 SDMDGSSVIAFAKLKKLTFYIMEELEEWDLGTAIKGEIIIMPRLSSLTIWSCRKLKA--LPDHLLQKSTLQKLEIWGGCH 897 (923)
Q Consensus 820 ~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~--lp~~l~~l~sL~~L~l~~~c~ 897 (923)
...+++|+.|.+.++ .++.. .++..+..+++|+.|+|++|+ +.. ++..+..+++|++|++ ++|.
T Consensus 459 -------~~~~~~L~~L~L~~n-~l~~~----~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l-s~n~ 524 (592)
T 3ogk_B 459 -------GQYSPNVRWMLLGYV-GESDE----GLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWV-QGYR 524 (592)
T ss_dssp -------HHSCTTCCEEEECSC-CSSHH----HHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEE-ESCB
T ss_pred -------HHhCccceEeeccCC-CCCHH----HHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeEC-cCCc
Confidence 113667777777655 23221 122233466778888888886 321 3333445777888888 6776
No 67
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.68 E-value=1.3e-19 Score=207.06 Aligned_cols=348 Identities=18% Similarity=0.105 Sum_probs=223.4
Q ss_pred CCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccc-cchhh-hC
Q 039167 531 RGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIER-LPETL-CE 608 (923)
Q Consensus 531 ~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~-lp~~i-~~ 608 (923)
++++.|+++++.+........+..+++|++|++++|. +.......+|..+..+++|++|+|++|. +.. .+..+ ..
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~--l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~ 79 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG--LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQG 79 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC--CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHT
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCC--CCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHH
Confidence 5689999999987765555668899999999999876 2222233677888899999999999998 653 33333 34
Q ss_pred CC----CCcEEecCCCcccc-----ccCccccCCCCCCEEeCCCCcccccCCc----C-CCCCCCCCcCCceEecccCCc
Q 039167 609 LY----NLEHLNVNCCVKLR-----ELPQGIGRLRKLMYLDNECTVSLRYLPV----G-IGKLIRLRRVKEFVVGGGYGR 674 (923)
Q Consensus 609 L~----~L~~L~L~~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~l~~~p~----~-i~~L~~L~~L~~~~~~~~~~~ 674 (923)
+. +|++|++++|. +. .+|..+..+++|++|++++|......+. . ....++|++|++..+......
T Consensus 80 l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp TCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 55 79999999997 55 5688899999999999999853221121 1 223567888887665443211
Q ss_pred ccc-cccccCCCCCCCceEeCCCCCCChhhhHHhhcC-CCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEE
Q 039167 675 ACS-LGSLKKLNLLRDCRIRGLGDVSDVDEARRAELE-KKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELW 752 (923)
Q Consensus 675 ~~~-l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~ 752 (923)
... ...+..+++|+.+.+.+..-...........+. ..++|+.|++++|.+.. .....+...+..+++|++|+
T Consensus 159 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~-----~~~~~l~~~l~~~~~L~~L~ 233 (461)
T 1z7x_W 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS-----DNCRDLCGIVASKASLRELA 233 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT-----THHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH-----HHHHHHHHHHHhCCCccEEe
Confidence 111 223455677777777664311111111222222 35689999999887542 22234556667789999999
Q ss_pred EeeecCCCCC---cCcccccccccccEEeEeCCCCCCC----CCC-CCCCCCccceeccCCcCceEeCccccCCCCCCCC
Q 039167 753 INKYRGKRNV---VPKNWIMSLTNLRFLGLHEWRNCEH----LPP-LGKLPSLESLYIAGMKSVKRVGNEFLGVESDMDG 824 (923)
Q Consensus 753 l~~~~~~~~~---~~p~~~~~l~~L~~L~L~~~~~~~~----l~~-l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~ 824 (923)
+++|...... +.+.++..+++|+.|++++|..... ++. +..+++|++|++++|. +...+.......
T Consensus 234 Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~----- 307 (461)
T 1z7x_W 234 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCET----- 307 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHH-----
T ss_pred ccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHHHHH-----
Confidence 9988754310 1122333588999999999954432 333 6668999999999986 432221111100
Q ss_pred cccccCcccceeeccccccccccccccccccccccCcccceeeecccccCCCCC----cCCCC-CCCccEEEeccCCc
Q 039167 825 SSVIAFAKLKKLTFYIMEELEEWDLGTAIKGEIIIMPRLSSLTIWSCRKLKALP----DHLLQ-KSTLQKLEIWGGCH 897 (923)
Q Consensus 825 ~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~lp----~~l~~-l~sL~~L~l~~~c~ 897 (923)
.....++|+.|.+.+| .++.... ..++..+..+++|+.|++++|..-...+ ..+.. .++|++|++ ++|.
T Consensus 308 -l~~~~~~L~~L~L~~n-~l~~~~~-~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L-~~n~ 381 (461)
T 1z7x_W 308 -LLEPGCQLESLWVKSC-SFTAACC-SHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL-ADCD 381 (461)
T ss_dssp -HTSTTCCCCEEECTTS-CCBGGGH-HHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC-TTSC
T ss_pred -hccCCccceeeEcCCC-CCchHHH-HHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEEC-CCCC
Confidence 0113468999999877 3433221 1134456678999999999995322212 22222 679999999 7875
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.67 E-value=6.1e-18 Score=182.36 Aligned_cols=289 Identities=13% Similarity=0.112 Sum_probs=170.8
Q ss_pred ceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCccccccccccc-ccccCCCCCcEEeccCCCCccccchhhhCCCC
Q 039167 533 LRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVP-TNIEKLLHLKYLNLANQMEIERLPETLCELYN 611 (923)
Q Consensus 533 Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~ 611 (923)
+....++.+.+.. .+...+..+++|++|++++|. +..++ ..+.++++|++|+|++|. +...+. ++.+++
T Consensus 12 l~i~~ls~~~l~~-~~~~~~~~~~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~ 81 (317)
T 3o53_A 12 YKIEKVTDSSLKQ-ALASLRQSAWNVKELDLSGNP-------LSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLST 81 (317)
T ss_dssp EEEESCCTTTHHH-HHHHHHTTGGGCSEEECTTSC-------CCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCTT
T ss_pred eeEeeccccchhh-hHHHHhccCCCCCEEECcCCc-------cCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcCC
Confidence 3344444443322 123445667789999998765 55554 578888999999999988 766665 888999
Q ss_pred CcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEecccCCcccccccccCCCCCCCce
Q 039167 612 LEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLNLLRDCR 691 (923)
Q Consensus 612 L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~ 691 (923)
|++|++++|. +..+| .+++|++|++++| .+..++.. .+++|++|++..+....
T Consensus 82 L~~L~Ls~n~-l~~l~----~~~~L~~L~l~~n-~l~~~~~~--~~~~L~~L~l~~N~l~~------------------- 134 (317)
T 3o53_A 82 LRTLDLNNNY-VQELL----VGPSIETLHAANN-NISRVSCS--RGQGKKNIYLANNKITM------------------- 134 (317)
T ss_dssp CCEEECCSSE-EEEEE----ECTTCCEEECCSS-CCSEEEEC--CCSSCEEEECCSSCCCS-------------------
T ss_pred CCEEECcCCc-ccccc----CCCCcCEEECCCC-ccCCcCcc--ccCCCCEEECCCCCCCC-------------------
Confidence 9999999887 66655 3488899999888 34444432 24555555443322211
Q ss_pred EeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcC-CCCCCCCcEEEeeecCCCCCcCcccccc
Q 039167 692 IRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEAL-GPPPNLKELWINKYRGKRNVVPKNWIMS 770 (923)
Q Consensus 692 i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~~~~~L~~L~l~~~~~~~~~~~p~~~~~ 770 (923)
.....+..+++|+.|++++|.+.. ..+..+ ..+++|+.|++++|.... + +.. ..
T Consensus 135 ------------~~~~~~~~l~~L~~L~Ls~N~l~~---------~~~~~~~~~l~~L~~L~L~~N~l~~--~-~~~-~~ 189 (317)
T 3o53_A 135 ------------LRDLDEGCRSRVQYLDLKLNEIDT---------VNFAELAASSDTLEHLNLQYNFIYD--V-KGQ-VV 189 (317)
T ss_dssp ------------GGGBCTGGGSSEEEEECTTSCCCE---------EEGGGGGGGTTTCCEEECTTSCCCE--E-ECC-CC
T ss_pred ------------ccchhhhccCCCCEEECCCCCCCc---------ccHHHHhhccCcCCEEECCCCcCcc--c-ccc-cc
Confidence 001123345667777777766432 011122 245677888887777665 4 322 24
Q ss_pred cccccEEeEeCCCCCCCCCCCCCCCCccceeccCCcCceEeCccccCCCCCCCCcccccCcccceeeccccccccccccc
Q 039167 771 LTNLRFLGLHEWRNCEHLPPLGKLPSLESLYIAGMKSVKRVGNEFLGVESDMDGSSVIAFAKLKKLTFYIMEELEEWDLG 850 (923)
Q Consensus 771 l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~ 850 (923)
+++|+.|+|++|......+.+..+++|+.|++++|. ++.++..+ ..+++|+.|.+.+++ +.
T Consensus 190 l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~------------~~l~~L~~L~l~~N~------~~ 250 (317)
T 3o53_A 190 FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKAL------------RFSQNLEHFDLRGNG------FH 250 (317)
T ss_dssp CTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTC------------CCCTTCCEEECTTCC------CB
T ss_pred cccCCEEECCCCcCCcchhhhcccCcccEEECcCCc-ccchhhHh------------hcCCCCCEEEccCCC------cc
Confidence 777888888877554433446777788888887775 55555332 145667777666542 22
Q ss_pred -cccccccccCcccceeeecccccCCCCCcCCCCCCCccEEEeccCCchhhhhh
Q 039167 851 -TAIKGEIIIMPRLSSLTIWSCRKLKALPDHLLQKSTLQKLEIWGGCHILQERY 903 (923)
Q Consensus 851 -~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~sL~~L~l~~~c~~l~~~~ 903 (923)
+..+..+..+++|+.|++.+|+.++..+..-...+.+....- ..|..+...+
T Consensus 251 ~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~-~cc~~l~~~~ 303 (317)
T 3o53_A 251 CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA-YCCEDLPAPF 303 (317)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCCSSTTCEEETT-EEEBCCTTTH
T ss_pred CcCHHHHHhccccceEEECCCchhccCCchhccCCCceecccc-eeeccCChhH
Confidence 233445566777777777777666543322222222322222 3455555444
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=9.2e-17 Score=183.37 Aligned_cols=128 Identities=16% Similarity=0.089 Sum_probs=80.8
Q ss_pred CCCCCCCCcEEEeeecCCCCCcCccccc-ccccccEEeEeCCCCCCCCCCCCCCCCccceeccCCcCceEeCccccCCCC
Q 039167 742 LGPPPNLKELWINKYRGKRNVVPKNWIM-SLTNLRFLGLHEWRNCEHLPPLGKLPSLESLYIAGMKSVKRVGNEFLGVES 820 (923)
Q Consensus 742 l~~~~~L~~L~l~~~~~~~~~~~p~~~~-~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~ 820 (923)
+..+++|+.|++++|.... ++|.++. .+++|+.|+|++|.. ..++....+++|+.|+|++|. +..++..+
T Consensus 140 ~~~l~~L~~L~Ls~N~l~~--~~~~~l~~~l~~L~~L~Ls~N~l-~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~----- 210 (487)
T 3oja_A 140 EGCRSRVQYLDLKLNEIDT--VNFAELAASSDTLEHLNLQYNFI-YDVKGQVVFAKLKTLDLSSNK-LAFMGPEF----- 210 (487)
T ss_dssp GGGGSSEEEEECTTSCCCE--EEGGGGGGGTTTCCEEECTTSCC-CEEECCCCCTTCCEEECCSSC-CCEECGGG-----
T ss_pred hcCCCCCCEEECCCCCCCC--cChHHHhhhCCcccEEecCCCcc-ccccccccCCCCCEEECCCCC-CCCCCHhH-----
Confidence 3445667777777666555 3354554 678888888888753 344556667888888888776 55555432
Q ss_pred CCCCcccccCcccceeeccccccccccccccccccccccCcccceeeecccccC-CCCCcCCCCCCCccEEEe
Q 039167 821 DMDGSSVIAFAKLKKLTFYIMEELEEWDLGTAIKGEIIIMPRLSSLTIWSCRKL-KALPDHLLQKSTLQKLEI 892 (923)
Q Consensus 821 ~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~lp~L~~L~l~~c~~l-~~lp~~l~~l~sL~~L~l 892 (923)
..+++|+.|.+.++ .+. .+|..+..+++|+.|++++|+.. ..+|..+..++.|+.+++
T Consensus 211 -------~~l~~L~~L~Ls~N-~l~------~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 211 -------QSAAGVTWISLRNN-KLV------LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp -------GGGTTCSEEECTTS-CCC------EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred -------cCCCCccEEEecCC-cCc------ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 14566777766654 222 23445667788888888887654 345556666777776666
No 70
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.66 E-value=1.8e-18 Score=204.42 Aligned_cols=359 Identities=16% Similarity=0.072 Sum_probs=211.4
Q ss_pred cceEEEEEEecCCCCCccccccc-cCC-ceEEEeCCCCC-CCccchHHhhcCCcccEEeccccCCccccccccccccccc
Q 039167 507 KKILHLTLAIGCGPMPIYDNIEA-LRG-LRSLLLESTKH-SSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIE 583 (923)
Q Consensus 507 ~~~~~l~l~~~~~~~~~~~~~~~-~~~-Lr~L~l~~~~~-~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~ 583 (923)
..++.+.+..+.........+.. ++. |++|.+++|.. ....++....++++|++|+|++|. +.+.....++..+.
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~--~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS--FSEKDGKWLHELAQ 189 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCE--EECCCSHHHHHHHH
T ss_pred CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccc--ccCcchhHHHHHHh
Confidence 45677777665432212222333 333 88888887752 111234445678888888888764 11111111334455
Q ss_pred CCCCCcEEeccCCCCcc-----ccchhhhCCCCCcEEecCCCccccccCccccCCCCCCEEeCCCCccc---ccCCcCCC
Q 039167 584 KLLHLKYLNLANQMEIE-----RLPETLCELYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSL---RYLPVGIG 655 (923)
Q Consensus 584 ~l~~L~~L~L~~~~~l~-----~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l---~~~p~~i~ 655 (923)
.+++|++|++++|. +. .++..+.++++|++|++++|. +..+|..+..+++|++|+++.+... ...+..++
T Consensus 190 ~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 190 HNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred cCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 67888888888887 43 556667788888888888876 6678878888888888888753222 22334566
Q ss_pred CCCCCCcCCceEecccCCcccccccccCCCCCCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchH
Q 039167 656 KLIRLRRVKEFVVGGGYGRACSLGSLKKLNLLRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDED 735 (923)
Q Consensus 656 ~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 735 (923)
.+++|+.|.+..+... .....+..+++|+.|.+.... +. .......+..+++|+.|.++ +. ..+
T Consensus 268 ~~~~L~~L~l~~~~~~----~l~~~~~~~~~L~~L~Ls~~~-l~--~~~~~~~~~~~~~L~~L~L~-~~--------~~~ 331 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPN----EMPILFPFAAQIRKLDLLYAL-LE--TEDHCTLIQKCPNLEVLETR-NV--------IGD 331 (592)
T ss_dssp CCTTCCEEEETTCCTT----TGGGGGGGGGGCCEEEETTCC-CC--HHHHHHHHTTCTTCCEEEEE-GG--------GHH
T ss_pred ccccccccCccccchh----HHHHHHhhcCCCcEEecCCCc-CC--HHHHHHHHHhCcCCCEEecc-Cc--------cCH
Confidence 6777777654432211 111223455667777776654 22 12233446788899999998 32 122
Q ss_pred HHHhhcCCCCCCCCcEEEee----------ecCCC-CCcCcccccccccccEEeEeCCCCCCC-CCCCCC-CCCccceec
Q 039167 736 ERLLEALGPPPNLKELWINK----------YRGKR-NVVPKNWIMSLTNLRFLGLHEWRNCEH-LPPLGK-LPSLESLYI 802 (923)
Q Consensus 736 ~~~l~~l~~~~~L~~L~l~~----------~~~~~-~~~~p~~~~~l~~L~~L~L~~~~~~~~-l~~l~~-L~~L~~L~L 802 (923)
..+......+++|++|++.+ +.... ..+ +.....+++|+.|++..+..... +..++. +++|+.|++
T Consensus 332 ~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~-~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l 410 (592)
T 3ogk_B 332 RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL-IALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRL 410 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHH-HHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEE
T ss_pred HHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHH-HHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEE
Confidence 33333345578899999983 32221 001 22234688999999965543322 222443 889999999
Q ss_pred cCC---cCceEeCccccCCCCCCCCcccccCcccceeecccccc-ccccccccccccccccCcccceeeecccccCC-CC
Q 039167 803 AGM---KSVKRVGNEFLGVESDMDGSSVIAFAKLKKLTFYIMEE-LEEWDLGTAIKGEIIIMPRLSSLTIWSCRKLK-AL 877 (923)
Q Consensus 803 ~~~---~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~-L~~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~-~l 877 (923)
++| ..++..+..-. . ......+++|+.|.+.+|.+ +....+. .....+|+|+.|+|++|.... .+
T Consensus 411 ~~~~~~n~l~~~p~~~~-~-----~~~~~~~~~L~~L~L~~~~~~l~~~~~~----~~~~~~~~L~~L~L~~n~l~~~~~ 480 (592)
T 3ogk_B 411 VLLDREERITDLPLDNG-V-----RSLLIGCKKLRRFAFYLRQGGLTDLGLS----YIGQYSPNVRWMLLGYVGESDEGL 480 (592)
T ss_dssp EECSCCSCCSSCCCHHH-H-----HHHHHHCTTCCEEEEECCGGGCCHHHHH----HHHHSCTTCCEEEECSCCSSHHHH
T ss_pred eecCCCccccCchHHHH-H-----HHHHHhCCCCCEEEEecCCCCccHHHHH----HHHHhCccceEeeccCCCCCHHHH
Confidence 743 33332211100 0 00123588999999976643 2222111 112248999999999996322 24
Q ss_pred CcCCCCCCCccEEEeccCCc
Q 039167 878 PDHLLQKSTLQKLEIWGGCH 897 (923)
Q Consensus 878 p~~l~~l~sL~~L~l~~~c~ 897 (923)
+..+.++++|++|+| ++|+
T Consensus 481 ~~~~~~~~~L~~L~l-~~n~ 499 (592)
T 3ogk_B 481 MEFSRGCPNLQKLEM-RGCC 499 (592)
T ss_dssp HHHHTCCTTCCEEEE-ESCC
T ss_pred HHHHhcCcccCeeec-cCCC
Confidence 555677899999999 8997
No 71
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.65 E-value=1.7e-16 Score=139.66 Aligned_cols=81 Identities=28% Similarity=0.513 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc--ccCCHHHHHHHHHHHHhHhhhhhhHH
Q 039167 4 AIISPLLQQLTTMAAEETKEQVRLVTGVGKEVKKLSRNLQAIQAVLHDVEKR--QVKEESVRLWLDQLRDVSYNMEDVLE 81 (923)
Q Consensus 4 ~~v~~v~~~l~~~~~~~~~~e~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~--~~~~~~~~~wl~~lr~~~~d~ed~ld 81 (923)
|+|+++++||++ ++.+|+.++.||++++++|+++|++|++||.||+.+ +..+++++.|+++||++|||+|||||
T Consensus 1 a~v~~ll~KL~~----ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD 76 (115)
T 3qfl_A 1 AAISNLIPKLGE----LLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVD 76 (115)
T ss_dssp CTTCSHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH----HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 577889999999 889999999999999999999999999999999988 56789999999999999999999999
Q ss_pred HHHHHHH
Q 039167 82 EWSTARL 88 (923)
Q Consensus 82 ~~~~~~~ 88 (923)
+|.++..
T Consensus 77 ~f~~~~~ 83 (115)
T 3qfl_A 77 KFLVQVD 83 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999763
No 72
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.65 E-value=1.6e-16 Score=168.47 Aligned_cols=204 Identities=21% Similarity=0.233 Sum_probs=157.1
Q ss_pred cCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccc-cccccCCCCCcEEeccCCCCcccc-chhhh
Q 039167 530 LRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEV-PTNIEKLLHLKYLNLANQMEIERL-PETLC 607 (923)
Q Consensus 530 ~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~L~~~~~l~~l-p~~i~ 607 (923)
.++++.|++++|.+.... +..|..+++|++|++++|. +..+ |..+..+++|++|++++|..+..+ |..+.
T Consensus 31 ~~~l~~L~l~~n~i~~~~-~~~~~~~~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~ 102 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVP-AASFRACRNLTILWLHSNV-------LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH 102 (285)
T ss_dssp CTTCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSC-------CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTT
T ss_pred CCCceEEEeeCCcCCccC-HHHcccCCCCCEEECCCCc-------cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhc
Confidence 468999999999877643 4558899999999999775 5555 678899999999999999656766 67899
Q ss_pred CCCCCcEEecCCCcccccc-CccccCCCCCCEEeCCCCcccccCCc-CCCCCCCCCcCCceEecccCCcccccccccCCC
Q 039167 608 ELYNLEHLNVNCCVKLREL-PQGIGRLRKLMYLDNECTVSLRYLPV-GIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLN 685 (923)
Q Consensus 608 ~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~ 685 (923)
.+++|++|++++|. +..+ |..+..+++|++|++++| .+..+|. .++.+++|++|++..+.... +.
T Consensus 103 ~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------~~--- 169 (285)
T 1ozn_A 103 GLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISS--------VP--- 169 (285)
T ss_dssp TCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCE--------EC---
T ss_pred CCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCcccc--------cC---
Confidence 99999999999998 5555 667889999999999998 4555654 47888888888765432211 00
Q ss_pred CCCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCc
Q 039167 686 LLRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPK 765 (923)
Q Consensus 686 ~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p 765 (923)
...+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.... +++
T Consensus 170 --------------------~~~~~~l~~L~~L~l~~n~l~~---------~~~~~~~~l~~L~~L~l~~n~l~~--~~~ 218 (285)
T 1ozn_A 170 --------------------ERAFRGLHSLDRLLLHQNRVAH---------VHPHAFRDLGRLMTLYLFANNLSA--LPT 218 (285)
T ss_dssp --------------------TTTTTTCTTCCEEECCSSCCCE---------ECTTTTTTCTTCCEEECCSSCCSC--CCH
T ss_pred --------------------HHHhcCccccCEEECCCCcccc---------cCHhHccCcccccEeeCCCCcCCc--CCH
Confidence 0123456778888888876532 124556778999999999998887 766
Q ss_pred ccccccccccEEeEeCCCCC
Q 039167 766 NWIMSLTNLRFLGLHEWRNC 785 (923)
Q Consensus 766 ~~~~~l~~L~~L~L~~~~~~ 785 (923)
.++..+++|+.|+|++|...
T Consensus 219 ~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 219 EALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp HHHTTCTTCCEEECCSSCEE
T ss_pred HHcccCcccCEEeccCCCcc
Confidence 77889999999999999643
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.64 E-value=6.7e-17 Score=173.73 Aligned_cols=205 Identities=18% Similarity=0.098 Sum_probs=116.3
Q ss_pred cccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCccccccccccccccc-------CCCCCcEEeccCCCCcc
Q 039167 528 EALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIE-------KLLHLKYLNLANQMEIE 600 (923)
Q Consensus 528 ~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~-------~l~~L~~L~L~~~~~l~ 600 (923)
...++|+.|.+++|.+ . +|..+... |++|++++|.. . -..+|..+. ++.+|++|+|++|....
T Consensus 40 ~~~~~L~~l~l~~n~l-~--~p~~~~~~--L~~L~L~~n~l----~-~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 109 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE-A--DLGQFTDI--IKSLSLKRLTV----R-AARIPSRILFGALRVLGISGLQELTLENLEVTG 109 (312)
T ss_dssp EEEEECTTHHHHCCTT-C--CCHHHHHH--HHHCCCCEEEE----E-EEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBS
T ss_pred ccCCCceeEeeccccc-c--cHHHHHHH--Hhhcccccccc----c-CCCcCHHHHHHHHHhcCcCCccEEEccCCcccc
Confidence 3455666666666665 2 23323322 67777776540 0 113444444 57777777777777223
Q ss_pred ccchhh--hCCCCCcEEecCCCccccccCccccCC-----CCCCEEeCCCCcccccCC-cCCCCCCCCCcCCceEecccC
Q 039167 601 RLPETL--CELYNLEHLNVNCCVKLRELPQGIGRL-----RKLMYLDNECTVSLRYLP-VGIGKLIRLRRVKEFVVGGGY 672 (923)
Q Consensus 601 ~lp~~i--~~L~~L~~L~L~~~~~l~~lp~~i~~L-----~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~ 672 (923)
.+|..+ +.+++|++|++++|. +..+|..++.+ ++|++|++++|. +..+| ..++.+++|++|++
T Consensus 110 ~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L------- 180 (312)
T 1wwl_A 110 TAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDL------- 180 (312)
T ss_dssp CCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEEC-------
T ss_pred hhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEEC-------
Confidence 566655 777777777777776 55556666665 777777777773 33333 44444444444433
Q ss_pred CcccccccccCCCCCCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcC--CCCCCCCc
Q 039167 673 GRACSLGSLKKLNLLRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEAL--GPPPNLKE 750 (923)
Q Consensus 673 ~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l--~~~~~L~~ 750 (923)
++|.+. .....+..+ ..+++|++
T Consensus 181 ------------------------------------------------s~N~l~-------~~~~~~~~~~~~~l~~L~~ 205 (312)
T 1wwl_A 181 ------------------------------------------------SDNPEL-------GERGLISALCPLKFPTLQV 205 (312)
T ss_dssp ------------------------------------------------CSCTTC-------HHHHHHHHSCTTSCTTCCE
T ss_pred ------------------------------------------------CCCCcC-------cchHHHHHHHhccCCCCCE
Confidence 333211 001122222 45566777
Q ss_pred EEEeeecCCCC-CcCcccccccccccEEeEeCCCCCCCC--CCCCCCCCccceeccCCc
Q 039167 751 LWINKYRGKRN-VVPKNWIMSLTNLRFLGLHEWRNCEHL--PPLGKLPSLESLYIAGMK 806 (923)
Q Consensus 751 L~l~~~~~~~~-~~~p~~~~~l~~L~~L~L~~~~~~~~l--~~l~~L~~L~~L~L~~~~ 806 (923)
|++++|..... .++...+..+++|+.|+|++|...... +.+..+++|++|++++|.
T Consensus 206 L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 206 LALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp EECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred EECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence 77776665530 021223346788888888888655544 335667888888888765
No 74
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.62 E-value=1.5e-17 Score=196.76 Aligned_cols=135 Identities=19% Similarity=0.152 Sum_probs=80.4
Q ss_pred ceEEEEEEecCCCCCcccccc-ccCCceEEEeCCCC-CCCccchHHhhcCCcccEEeccccCCcccccccccccccccCC
Q 039167 508 KILHLTLAIGCGPMPIYDNIE-ALRGLRSLLLESTK-HSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKL 585 (923)
Q Consensus 508 ~~~~l~l~~~~~~~~~~~~~~-~~~~Lr~L~l~~~~-~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l 585 (923)
.++++.+..+.........+. .+++|++|.+.+|. +....++..+.++++|++|++++|. +.+.....++.....+
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~--i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD--VDDVSGHWLSHFPDTY 183 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE--EECCCGGGGGGSCTTC
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc--cCCcchHHHHHHhhcC
Confidence 456666665543221222232 56788888887773 2222244555678888888888665 1122222344444566
Q ss_pred CCCcEEeccCCC-Cc--cccchhhhCCCCCcEEecCCCccccccCccccCCCCCCEEeCCCC
Q 039167 586 LHLKYLNLANQM-EI--ERLPETLCELYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECT 644 (923)
Q Consensus 586 ~~L~~L~L~~~~-~l--~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~ 644 (923)
++|++|++++|. .+ ..++..+.++++|++|++++|..+..+|..+..+++|++|++..+
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 778888887774 11 123343456788888888877556667777777777887776544
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.62 E-value=1.5e-16 Score=171.03 Aligned_cols=223 Identities=20% Similarity=0.153 Sum_probs=160.3
Q ss_pred ceEEEeCCCCCCCccchHHhh-------cCCcccEEeccccCCcccccccc-cccccc--cCCCCCcEEeccCCCCcccc
Q 039167 533 LRSLLLESTKHSSVILPQLFD-------KLTCLRALKLEVHNERLPEDFIK-EVPTNI--EKLLHLKYLNLANQMEIERL 602 (923)
Q Consensus 533 Lr~L~l~~~~~~~~~l~~~~~-------~~~~Lr~L~L~~~~~~~~~~~~~-~lp~~i--~~l~~L~~L~L~~~~~l~~l 602 (923)
++.|++++|.+....++..+. ++++|++|++++|. +. .+|..+ +.+++|++|+|++|. +..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~ 136 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE-------VTGTAPPPLLEATGPDLNILNLRNVS-WATR 136 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB-------CBSCCCCCSSSCCSCCCSEEEEESCB-CSSS
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCc-------ccchhHHHHHHhcCCCccEEEccCCC-Ccch
Confidence 888888888765544454444 79999999999876 44 577776 899999999999998 8877
Q ss_pred chhhhCC-----CCCcEEecCCCccccccC-ccccCCCCCCEEeCCCCccccc--CCcCC--CCCCCCCcCCceEecccC
Q 039167 603 PETLCEL-----YNLEHLNVNCCVKLRELP-QGIGRLRKLMYLDNECTVSLRY--LPVGI--GKLIRLRRVKEFVVGGGY 672 (923)
Q Consensus 603 p~~i~~L-----~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~--~p~~i--~~L~~L~~L~~~~~~~~~ 672 (923)
|..++.+ ++|++|++++|. +..+| ..++.+++|++|++++|..... +|..+ +.+++|++|++..+...
T Consensus 137 ~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~- 214 (312)
T 1wwl_A 137 DAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME- 214 (312)
T ss_dssp SSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC-
T ss_pred hHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc-
Confidence 9888887 999999999998 66655 7899999999999999954332 23333 66677776655432211
Q ss_pred CcccccccccCCCCCCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEE
Q 039167 673 GRACSLGSLKKLNLLRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELW 752 (923)
Q Consensus 673 ~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~ 752 (923)
.........+..+++|+.|++++|.+.... ....+..+++|+.|+
T Consensus 215 ---------------------------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--------~~~~~~~l~~L~~L~ 259 (312)
T 1wwl_A 215 ---------------------------TPSGVCSALAAARVQLQGLDLSHNSLRDAA--------GAPSCDWPSQLNSLN 259 (312)
T ss_dssp ---------------------------CHHHHHHHHHHTTCCCSEEECTTSCCCSSC--------CCSCCCCCTTCCEEE
T ss_pred ---------------------------chHHHHHHHHhcCCCCCEEECCCCcCCccc--------chhhhhhcCCCCEEE
Confidence 111111223345678888888888754311 012334467899999
Q ss_pred EeeecCCCCCcCcccccccccccEEeEeCCCCCCCCCCCCCCCCccceeccCCc
Q 039167 753 INKYRGKRNVVPKNWIMSLTNLRFLGLHEWRNCEHLPPLGKLPSLESLYIAGMK 806 (923)
Q Consensus 753 l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~ 806 (923)
+++|.... + |.++. ++|+.|+|++|... .+|.+..+++|++|++++|+
T Consensus 260 Ls~N~l~~--i-p~~~~--~~L~~L~Ls~N~l~-~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 260 LSFTGLKQ--V-PKGLP--AKLSVLDLSYNRLD-RNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp CTTSCCSS--C-CSSCC--SEEEEEECCSSCCC-SCCCTTTSCEEEEEECTTCT
T ss_pred CCCCccCh--h-hhhcc--CCceEEECCCCCCC-CChhHhhCCCCCEEeccCCC
Confidence 98888776 7 55554 78999999988544 44668888999999988876
No 76
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.61 E-value=5e-14 Score=154.29 Aligned_cols=278 Identities=12% Similarity=0.084 Sum_probs=170.8
Q ss_pred CCCceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcc------cH
Q 039167 175 DESEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPF------DE 248 (923)
Q Consensus 175 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~------~~ 248 (923)
.+..|+||+++++++.+++.. + +++.|+|++|+|||||++++++. . . .+|+++.... +.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~-------~-~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN-------Y-PLTLLLGIRRVGKSSLLRAFLNE--R----P-GILIDCRELYAERGHITR 74 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH-------C-SEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEEHHHHHHTTTCBCH
T ss_pred ChHhcCChHHHHHHHHHHHhc-------C-CeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEEeecccccccCCCH
Confidence 456799999999999998853 2 68999999999999999999874 2 1 6777765432 45
Q ss_pred HHHHHHHHHHHhC-----------------CCC-CCcCHHHHHHHHHHHhcC-CceEEEecCCCCCC-------hhhHHH
Q 039167 249 FRIARAIIEALTG-----------------CLP-NFVEFQSLMQHIQKHVAG-KKLLLVLDDVWNEN-------FHKWEQ 302 (923)
Q Consensus 249 ~~~~~~i~~~l~~-----------------~~~-~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~-------~~~~~~ 302 (923)
..++..+.+.+.. ..+ ...+..++...+.+.... ++++|||||+++-+ ...+..
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 5666666655432 000 113455566666665543 38999999997632 122344
Q ss_pred hHHhhhcCCCCcEEEEEecchHHHHHh-----------cc-cceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHH
Q 039167 303 FNNCLKNCLYGSKILITTRKEAVARIM-----------GS-TNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGR 370 (923)
Q Consensus 303 l~~~l~~~~~gs~iivTtR~~~v~~~~-----------~~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~ 370 (923)
+....... .+.++|+|++...+...+ +. ...+++.+|+.+++.+++....-..+.... .+.+.
T Consensus 155 L~~~~~~~-~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~----~~~~~ 229 (350)
T 2qen_A 155 FAYAYDSL-PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP----ENEIE 229 (350)
T ss_dssp HHHHHHHC-TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHHH
T ss_pred HHHHHHhc-CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHH
Confidence 44443332 477899998876532211 11 247999999999999999875321111111 23578
Q ss_pred HHHHhcCCChHHHHHHHHHHccCCCHHHHHH-HHhhhhhhhhhhhhhhhhHHHhhcccCChhhHHHHhhhccCCCCcccC
Q 039167 371 EITRKCKGLPLATKTIASLLRSKNTEKEWQN-ILKSEIWEIEQVEKNLLAPLLLSYNELPSKVKQCFTYCAVFPKDVILK 449 (923)
Q Consensus 371 ~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~-~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~~s~fp~~~~i~ 449 (923)
.|++.|+|+|+++..++..+....+...+.. +.+... . .....+. .+.+ + ++..+..+..+|. + .++
T Consensus 230 ~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~l~---~l~~-~-~~~~~~~l~~la~---g-~~~ 297 (350)
T 2qen_A 230 EAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAK-G--LIMGELE---ELRR-R-SPRYVDILRAIAL---G-YNR 297 (350)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-H--HHHHHHH---HHHH-H-CHHHHHHHHHHHT---T-CCS
T ss_pred HHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHH-H--HHHHHHH---HHHh-C-ChhHHHHHHHHHh---C-CCC
Confidence 8999999999999999876533222222211 111000 0 0011111 1122 2 7889999999998 2 134
Q ss_pred hHHHHHHHHhcc-CCCHHHHHHHHHHHHHhccccccc
Q 039167 450 KDKLIELWMAQE-TKEMEEIGEEYFNVLASRSFFQEF 485 (923)
Q Consensus 450 ~~~Li~~W~ae~-~~~~e~~~~~~~~~Lv~r~l~q~~ 485 (923)
...+.....+.. ..+ ......+++.|++.+++...
T Consensus 298 ~~~l~~~~~~~~~~~~-~~~~~~~l~~L~~~gli~~~ 333 (350)
T 2qen_A 298 WSLIRDYLAVKGTKIP-EPRLYALLENLKKMNWIVEE 333 (350)
T ss_dssp HHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhCCCC-HHHHHHHHHHHHhCCCEEec
Confidence 455554432221 222 34467899999999999764
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.61 E-value=2.7e-15 Score=160.62 Aligned_cols=197 Identities=17% Similarity=0.246 Sum_probs=121.5
Q ss_pred ccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchhh
Q 039167 527 IEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPETL 606 (923)
Q Consensus 527 ~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i 606 (923)
...+++|+.|.++++.+... + .+..+++|++|++++|. +..++. +..+++|++|++++|. +..+| .+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l--~-~~~~l~~L~~L~L~~n~-------i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~ 103 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI--E-GVQYLNNLIGLELKDNQ-------ITDLAP-LKNLTKITELELSGNP-LKNVS-AI 103 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC--T-TGGGCTTCCEEECCSSC-------CCCCGG-GTTCCSCCEEECCSCC-CSCCG-GG
T ss_pred HHHcCCcCEEEeeCCCccCc--h-hhhccCCCCEEEccCCc-------CCCChh-HccCCCCCEEEccCCc-CCCch-hh
Confidence 34566777777777665542 3 25667777777777554 555555 6677777777777776 66665 36
Q ss_pred hCCCCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEecccCCcccccccccCCCC
Q 039167 607 CELYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLNL 686 (923)
Q Consensus 607 ~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~ 686 (923)
+.+++|++|++++|. +..+|. +..+++|++|++++| .+..+|. ++.++
T Consensus 104 ~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~---------------------------- 151 (308)
T 1h6u_A 104 AGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLN-QITNISP-LAGLT---------------------------- 151 (308)
T ss_dssp TTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCT----------------------------
T ss_pred cCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCC-ccCcCcc-ccCCC----------------------------
Confidence 777777777777766 555654 667777777777666 3333332 33333
Q ss_pred CCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCcc
Q 039167 687 LRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKN 766 (923)
Q Consensus 687 L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~ 766 (923)
+|+.|+++.|.+.. +..+..+++|+.|++++|.... +++
T Consensus 152 ---------------------------~L~~L~l~~n~l~~-----------~~~l~~l~~L~~L~l~~n~l~~--~~~- 190 (308)
T 1h6u_A 152 ---------------------------NLQYLSIGNAQVSD-----------LTPLANLSKLTTLKADDNKISD--ISP- 190 (308)
T ss_dssp ---------------------------TCCEEECCSSCCCC-----------CGGGTTCTTCCEEECCSSCCCC--CGG-
T ss_pred ---------------------------CccEEEccCCcCCC-----------ChhhcCCCCCCEEECCCCccCc--Chh-
Confidence 33444444443221 0114456677777777776665 522
Q ss_pred cccccccccEEeEeCCCCCCCCCCCCCCCCccceeccCCcCceEeC
Q 039167 767 WIMSLTNLRFLGLHEWRNCEHLPPLGKLPSLESLYIAGMKSVKRVG 812 (923)
Q Consensus 767 ~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~ 812 (923)
+..+++|+.|+|++|.. ..++++..+++|+.|++++|+ +...+
T Consensus 191 -l~~l~~L~~L~L~~N~l-~~~~~l~~l~~L~~L~l~~N~-i~~~~ 233 (308)
T 1h6u_A 191 -LASLPNLIEVHLKNNQI-SDVSPLANTSNLFIVTLTNQT-ITNQP 233 (308)
T ss_dssp -GGGCTTCCEEECTTSCC-CBCGGGTTCTTCCEEEEEEEE-EECCC
T ss_pred -hcCCCCCCEEEccCCcc-CccccccCCCCCCEEEccCCe-eecCC
Confidence 66788888888888854 344557888888888888876 44333
No 78
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.61 E-value=1.9e-14 Score=161.41 Aligned_cols=296 Identities=13% Similarity=0.055 Sum_probs=182.0
Q ss_pred CCceecchhhHHHHHHHH-hcCCCCCCCCCEEEEE--EecCCChHHHHHHHHhcCcccc---cccc-eEEEEEeCCcccH
Q 039167 176 ESEIFGRKDEKNELVDRL-ICENSIEQKGPHIISL--VGMGGIGKTTLAQFAYNNGDVE---KNFE-KRIWVCVSDPFDE 248 (923)
Q Consensus 176 ~~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~---~~F~-~~~wv~~s~~~~~ 248 (923)
+..++||+++++++.+++ .............+.| +|++|+||||||+++++..... ..|. ..+|+.+....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 467999999999999988 4321100013456666 9999999999999999842211 0122 3567877677788
Q ss_pred HHHHHHHHHHHhCCCCC-CcCHHHHHHHHHHHhc--CCceEEEecCCCCCC------hhhHHHhHHhhhcC---C--CCc
Q 039167 249 FRIARAIIEALTGCLPN-FVEFQSLMQHIQKHVA--GKKLLLVLDDVWNEN------FHKWEQFNNCLKNC---L--YGS 314 (923)
Q Consensus 249 ~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~------~~~~~~l~~~l~~~---~--~gs 314 (923)
..++..++.+++...+. ..+.......+.+.+. +++++|||||+|.-. .+.+..+...+... + .+.
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 89999999998764332 2345556666666664 779999999996521 23333333333322 2 344
Q ss_pred EEEEEecchHHHHHhc--------c-cceEeCCCCChHHHHHHHHHhh---cCCCCccchhhHHHHHHHHHHhcC-----
Q 039167 315 KILITTRKEAVARIMG--------S-TNIISVNVLSGMECWLVFESLA---FVGKSMEERENLEKIGREITRKCK----- 377 (923)
Q Consensus 315 ~iivTtR~~~v~~~~~--------~-~~~~~l~~L~~~~~~~lf~~~a---~~~~~~~~~~~~~~~~~~i~~~c~----- 377 (923)
.||+||+...+...+. . ...+++.+++.++++++|...+ +... ... .+....|++.|+
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~--~~~---~~~~~~i~~~~~~~~~~ 255 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT--VWE---PRHLELISDVYGEDKGG 255 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT--SCC---HHHHHHHHHHHCGGGTS
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC--CCC---hHHHHHHHHHHHHhccC
Confidence 5888888665432211 1 2239999999999999997653 3211 111 345778888899
Q ss_pred -CChHHHHHHHHHHc------cC--CCHHHHHHHHhhhhhhhhhhhhhh-hhHHHhhcccCChhhHHHHhhhccCC--CC
Q 039167 378 -GLPLATKTIASLLR------SK--NTEKEWQNILKSEIWEIEQVEKNL-LAPLLLSYNELPSKVKQCFTYCAVFP--KD 445 (923)
Q Consensus 378 -GlPLai~~~~~~l~------~~--~~~~~w~~~l~~~~~~~~~~~~~~-~~~l~~sy~~L~~~~k~~fl~~s~fp--~~ 445 (923)
|.|..+..+..... .. -+.+.+..++.. .. ...+.-++..||++.+.++..++.+. .+
T Consensus 256 ~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~----------~~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~ 325 (412)
T 1w5s_A 256 DGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSE----------NEAASIQTHELEALSIHELIILRLIAEATLGGM 325 (412)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH----------C------CCSSSSSCHHHHHHHHHHHHHHHTTC
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH----------HhccchHHHHHHcCCHHHHHHHHHHHHHHhcCC
Confidence 99976655543211 11 123333322221 01 23455677899999999999898754 33
Q ss_pred cccChHHHHHHH--Hh-c--cCC-CHHHHHHHHHHHHHhcccccccC
Q 039167 446 VILKKDKLIELW--MA-Q--ETK-EMEEIGEEYFNVLASRSFFQEFG 486 (923)
Q Consensus 446 ~~i~~~~Li~~W--~a-e--~~~-~~e~~~~~~~~~Lv~r~l~q~~~ 486 (923)
..++...+...+ ++ + +.. ........+++.|++.+++....
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 326 EWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp SSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEeec
Confidence 356666665554 33 2 111 12344567899999999987543
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.61 E-value=8.9e-16 Score=175.23 Aligned_cols=216 Identities=16% Similarity=0.083 Sum_probs=148.0
Q ss_pred ccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchhhhC
Q 039167 529 ALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPETLCE 608 (923)
Q Consensus 529 ~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~ 608 (923)
.+++|+.|++++|.+.... +..|..+++|++|+|++|. +..+++ ++.+++|++|+|++|. +..+|.
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~-------l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~---- 97 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNV-------LYETLD-LESLSTLRTLDLNNNY-VQELLV---- 97 (487)
T ss_dssp TGGGCCEEECCSSCCCCCC-GGGGTTCTTCCEEECTTSC-------CEEEEE-CTTCTTCCEEECCSSE-EEEEEE----
T ss_pred cCCCccEEEeeCCcCCCCC-HHHHhCCCCCCEEEeeCCC-------CCCCcc-cccCCCCCEEEecCCc-CCCCCC----
Confidence 4457888888888876643 5567888888888888765 444444 7888888888888887 777764
Q ss_pred CCCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEecccCCcccccccccCCCCCC
Q 039167 609 LYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLNLLR 688 (923)
Q Consensus 609 L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~ 688 (923)
.++|++|++++|. +..+|. ..+++|++|++++|......|..++.+++|++|++..+......
T Consensus 98 ~~~L~~L~L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------------- 160 (487)
T 3oja_A 98 GPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN-------------- 160 (487)
T ss_dssp CTTCCEEECCSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE--------------
T ss_pred CCCcCEEECcCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC--------------
Confidence 3788888888887 666654 34678888888888544444566777777777766443322100
Q ss_pred CceEeCCCCCCChhhhHHhhc-CCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCccc
Q 039167 689 DCRIRGLGDVSDVDEARRAEL-EKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKNW 767 (923)
Q Consensus 689 ~l~i~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~ 767 (923)
+..+ ..+++|+.|++++|.+.. ......+++|+.|++++|.... +|| .
T Consensus 161 -----------------~~~l~~~l~~L~~L~Ls~N~l~~-----------~~~~~~l~~L~~L~Ls~N~l~~--~~~-~ 209 (487)
T 3oja_A 161 -----------------FAELAASSDTLEHLNLQYNFIYD-----------VKGQVVFAKLKTLDLSSNKLAF--MGP-E 209 (487)
T ss_dssp -----------------GGGGGGGTTTCCEEECTTSCCCE-----------EECCCCCTTCCEEECCSSCCCE--ECG-G
T ss_pred -----------------hHHHhhhCCcccEEecCCCcccc-----------ccccccCCCCCEEECCCCCCCC--CCH-h
Confidence 0111 134567777777776432 1223357788888888887776 634 4
Q ss_pred ccccccccEEeEeCCCCCCCCCCCCCCCCccceeccCCc
Q 039167 768 IMSLTNLRFLGLHEWRNCEHLPPLGKLPSLESLYIAGMK 806 (923)
Q Consensus 768 ~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~ 806 (923)
+..+++|+.|+|++|......+.++.+++|+.|++++|+
T Consensus 210 ~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 210 FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCC
Confidence 777888888888888655433337778888888888876
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.57 E-value=3.9e-16 Score=170.07 Aligned_cols=101 Identities=15% Similarity=0.182 Sum_probs=73.6
Q ss_pred ceEEEeCCCCCCCccchHHhhcC--CcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCcc-c-cchhhhC
Q 039167 533 LRSLLLESTKHSSVILPQLFDKL--TCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIE-R-LPETLCE 608 (923)
Q Consensus 533 Lr~L~l~~~~~~~~~l~~~~~~~--~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~-~-lp~~i~~ 608 (923)
++.++++++.+. +..+..+ +.+++|++++|. +...+..+..+++|++|++++|. +. . +|..+..
T Consensus 49 ~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~-------l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~ 116 (336)
T 2ast_B 49 WQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSF-------MDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQ 116 (336)
T ss_dssp SSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCE-------ECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTT
T ss_pred heeeccccccCC----HHHHHhhhhccceEEEcCCcc-------ccccchhhccCCCCCEEEccCCC-cCHHHHHHHHhh
Confidence 456666666543 3445555 788888888654 55555557778888888888887 54 2 7777888
Q ss_pred CCCCcEEecCCCccccccCccccCCCCCCEEeCCCCc
Q 039167 609 LYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTV 645 (923)
Q Consensus 609 L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~ 645 (923)
+++|++|++++|......|..++.+++|++|++++|.
T Consensus 117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~ 153 (336)
T 2ast_B 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS 153 (336)
T ss_dssp BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCB
T ss_pred CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCC
Confidence 8888888888887334567778888888888888873
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.57 E-value=4.3e-14 Score=149.62 Aligned_cols=80 Identities=21% Similarity=0.301 Sum_probs=43.1
Q ss_pred hcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCcccc-chhhhCCCCCcEEecCCCccccccCcccc
Q 039167 553 DKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERL-PETLCELYNLEHLNVNCCVKLRELPQGIG 631 (923)
Q Consensus 553 ~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~ 631 (923)
.++++++.++++++. +..+|..+. .+|++|+|++|. +..+ |..+..+++|++|++++|. +..+|.. +
T Consensus 7 ~~l~~l~~l~~~~~~-------l~~ip~~~~--~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~ 74 (290)
T 1p9a_G 7 SKVASHLEVNCDKRN-------LTALPPDLP--KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-G 74 (290)
T ss_dssp ECSTTCCEEECTTSC-------CSSCCSCCC--TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-S
T ss_pred cccCCccEEECCCCC-------CCcCCCCCC--CCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCc-cCcccCC-C
Confidence 445555555555433 455554443 455666666665 4433 3445566666666666654 5555443 5
Q ss_pred CCCCCCEEeCCCC
Q 039167 632 RLRKLMYLDNECT 644 (923)
Q Consensus 632 ~L~~L~~L~l~~~ 644 (923)
.+++|++|++++|
T Consensus 75 ~l~~L~~L~Ls~N 87 (290)
T 1p9a_G 75 TLPVLGTLDLSHN 87 (290)
T ss_dssp CCTTCCEEECCSS
T ss_pred CCCcCCEEECCCC
Confidence 5566666666555
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.56 E-value=2.5e-14 Score=151.48 Aligned_cols=199 Identities=20% Similarity=0.162 Sum_probs=144.1
Q ss_pred cccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccc-cccccCCCCCcEEeccCCCCccccch
Q 039167 526 NIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEV-PTNIEKLLHLKYLNLANQMEIERLPE 604 (923)
Q Consensus 526 ~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~ 604 (923)
.+..+++++.+++.++.+..+ |..+ .+.+++|+|++|. +..+ |..+..+++|++|+|++|. +..+|.
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~i--p~~~--~~~l~~L~L~~N~-------l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~ 72 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTAL--PPDL--PKDTTILHLSENL-------LYTFSLATLMPYTRLTQLNLDRAE-LTKLQV 72 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSC--CSCC--CTTCCEEECTTSC-------CSEEEGGGGTTCTTCCEEECTTSC-CCEEEC
T ss_pred cccccCCccEEECCCCCCCcC--CCCC--CCCCCEEEcCCCc-------CCccCHHHhhcCCCCCEEECCCCc-cCcccC
Confidence 356778899999999887654 2212 3689999999776 5554 4678899999999999998 888887
Q ss_pred hhhCCCCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCC-cCCCCCCCCCcCCceEecccCCcccccccccC
Q 039167 605 TLCELYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLP-VGIGKLIRLRRVKEFVVGGGYGRACSLGSLKK 683 (923)
Q Consensus 605 ~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~ 683 (923)
. +.+++|++|++++|. +..+|..+..+++|++|++++| .+..+| ..++.+++|++|++..+....
T Consensus 73 ~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~----------- 138 (290)
T 1p9a_G 73 D-GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKT----------- 138 (290)
T ss_dssp C-SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCC-----------
T ss_pred C-CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCc-----------
Confidence 4 899999999999987 8899998999999999999998 455555 345666666665443221110
Q ss_pred CCCCCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCc
Q 039167 684 LNLLRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVV 763 (923)
Q Consensus 684 L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~ 763 (923)
+ ....+..+++|+.|++++|.... +
T Consensus 139 ~-----------------------------------------------------~~~~~~~l~~L~~L~L~~N~l~~--l 163 (290)
T 1p9a_G 139 L-----------------------------------------------------PPGLLTPTPKLEKLSLANNNLTE--L 163 (290)
T ss_dssp C-----------------------------------------------------CTTTTTTCTTCCEEECTTSCCSC--C
T ss_pred c-----------------------------------------------------ChhhcccccCCCEEECCCCcCCc--c
Confidence 0 00123345667777777776666 6
Q ss_pred CcccccccccccEEeEeCCCCCCCCCC-CCCCCCccceeccCCc
Q 039167 764 PKNWIMSLTNLRFLGLHEWRNCEHLPP-LGKLPSLESLYIAGMK 806 (923)
Q Consensus 764 ~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~ 806 (923)
++..+..+++|+.|+|++|... .+|. +..+++|+.|+|.+|+
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred CHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCC
Confidence 5666677888888888888654 4444 6777888888888876
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.56 E-value=2.7e-14 Score=150.55 Aligned_cols=56 Identities=18% Similarity=0.255 Sum_probs=27.2
Q ss_pred CCcEEeccCCCCccccch-hhhCCCCCcEEecCCCccccccCc-cccCCCCCCEEeCCCC
Q 039167 587 HLKYLNLANQMEIERLPE-TLCELYNLEHLNVNCCVKLRELPQ-GIGRLRKLMYLDNECT 644 (923)
Q Consensus 587 ~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~ 644 (923)
+|++|++++|. +..+|. .+.++++|++|++++|. +..+|. .+..+++|++|++++|
T Consensus 29 ~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 29 STKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp TCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTC
T ss_pred CccEEECCCCc-ccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCC
Confidence 45555555554 444433 44555555555555554 333332 3445555555555554
No 84
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.56 E-value=9e-15 Score=154.21 Aligned_cols=127 Identities=22% Similarity=0.225 Sum_probs=92.1
Q ss_pred CCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccc-cccCCCCCcEEeccCCCCccccc-hhhhC
Q 039167 531 RGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPT-NIEKLLHLKYLNLANQMEIERLP-ETLCE 608 (923)
Q Consensus 531 ~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~~l~~lp-~~i~~ 608 (923)
++++.|++++|.+.... +..|.++++|++|++++|. +..++. .+.++++|++|+|++|. +..+| ..+.+
T Consensus 28 ~~l~~L~ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 98 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCE-------IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSG 98 (276)
T ss_dssp TTCCEEECTTCCCCEEC-TTTTTTCTTCSEEECTTCC-------CCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTT
T ss_pred CCccEEECCCCcccccC-HhHhccccCCcEEECCCCc-------CCccCHHHccCCcCCCEEECCCCc-cCccChhhhcC
Confidence 46888888888766543 3357788888888888665 555543 57788888888888887 66555 56888
Q ss_pred CCCCcEEecCCCccccccCc-cccCCCCCCEEeCCCCccccc--CCcCCCCCCCCCcCCceEe
Q 039167 609 LYNLEHLNVNCCVKLRELPQ-GIGRLRKLMYLDNECTVSLRY--LPVGIGKLIRLRRVKEFVV 668 (923)
Q Consensus 609 L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~--~p~~i~~L~~L~~L~~~~~ 668 (923)
+++|++|++++|. +..++. .++.+++|++|++++|. +.. +|..++.+++|++|++..+
T Consensus 99 l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 99 LSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN 159 (276)
T ss_dssp CTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CccccEEECCCCC-ccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCC
Confidence 8888888888887 555554 57888888888888874 333 5666777777777765544
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.56 E-value=1.5e-14 Score=151.92 Aligned_cols=81 Identities=27% Similarity=0.380 Sum_probs=42.0
Q ss_pred hcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchhhhCCCCCcEEecCCCccccccCcc-cc
Q 039167 553 DKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPETLCELYNLEHLNVNCCVKLRELPQG-IG 631 (923)
Q Consensus 553 ~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~ 631 (923)
..++.|+.|++++|. +..++ .+..+++|++|++++|. +..+| .++.+++|++|++++|. +..+|.. +.
T Consensus 38 ~~l~~L~~L~l~~~~-------i~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~ 106 (272)
T 3rfs_A 38 NELNSIDQIIANNSD-------IKSVQ-GIQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFD 106 (272)
T ss_dssp HHHTTCCEEECTTSC-------CCCCT-TGGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTT
T ss_pred ccccceeeeeeCCCC-------ccccc-ccccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCc-cCccChhHhc
Confidence 345555555555433 33332 24555555566655555 44443 35555556666665554 4444333 45
Q ss_pred CCCCCCEEeCCCC
Q 039167 632 RLRKLMYLDNECT 644 (923)
Q Consensus 632 ~L~~L~~L~l~~~ 644 (923)
.+++|++|++++|
T Consensus 107 ~l~~L~~L~L~~n 119 (272)
T 3rfs_A 107 KLTNLKELVLVEN 119 (272)
T ss_dssp TCTTCCEEECTTS
T ss_pred CCcCCCEEECCCC
Confidence 5555666655555
No 86
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.55 E-value=3e-13 Score=148.45 Aligned_cols=277 Identities=12% Similarity=0.126 Sum_probs=165.4
Q ss_pred CCCceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCc-----ccHH
Q 039167 175 DESEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDP-----FDEF 249 (923)
Q Consensus 175 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-----~~~~ 249 (923)
.+..|+||+++++.|.+ +. . +++.|+|++|+|||||++++.+. ... ..+|+.+... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~------~---~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LR------A---PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TC------S---SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hc------C---CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHH
Confidence 45679999999999999 72 1 59999999999999999999884 222 2578887642 2344
Q ss_pred HHHHHHHHHHhC-------------CC-----C-----------CCcCHHHHHHHHHHHhcCCceEEEecCCCCCC----
Q 039167 250 RIARAIIEALTG-------------CL-----P-----------NFVEFQSLMQHIQKHVAGKKLLLVLDDVWNEN---- 296 (923)
Q Consensus 250 ~~~~~i~~~l~~-------------~~-----~-----------~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---- 296 (923)
..+..+.+.+.. .. + .......+...+.+... ++++|||||+++-+
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 455554443311 00 0 11234444444443322 49999999996632
Q ss_pred hhhHHHhHHhhhcCCCCcEEEEEecchHHHHHh-----------cc-cceEeCCCCChHHHHHHHHHhhcCCCCccchhh
Q 039167 297 FHKWEQFNNCLKNCLYGSKILITTRKEAVARIM-----------GS-TNIISVNVLSGMECWLVFESLAFVGKSMEEREN 364 (923)
Q Consensus 297 ~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~-----------~~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~ 364 (923)
.+.+..+...... ..+.++|+|++.......+ +. ...+++.+|+.+++.+++......... ..+.
T Consensus 155 ~~~~~~l~~~~~~-~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~ 231 (357)
T 2fna_A 155 VNLLPALAYAYDN-LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI--DFKD 231 (357)
T ss_dssp CCCHHHHHHHHHH-CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC--CCCC
T ss_pred hhHHHHHHHHHHc-CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC--CCCc
Confidence 1223334333332 2467899999976542211 11 257899999999999999875321111 0111
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHccCCCHHHHHHHHhhhhhhhhhhhhhhhhHHH-hhc--ccCChhhHHHHhhhcc
Q 039167 365 LEKIGREITRKCKGLPLATKTIASLLRSKNTEKEWQNILKSEIWEIEQVEKNLLAPLL-LSY--NELPSKVKQCFTYCAV 441 (923)
Q Consensus 365 ~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~-~sy--~~L~~~~k~~fl~~s~ 441 (923)
...|++.|+|+|+++..++..+....+...|..-. . ......+...+. +.+ ..|++..+..+..+|+
T Consensus 232 ----~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~ 301 (357)
T 2fna_A 232 ----YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQT---L---EYAKKLILKEFENFLHGREIARKRYLNIMRTLSK 301 (357)
T ss_dssp ----HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHH---H---HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred ----HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHH---H---HHHHHHHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence 27899999999999999988765433333332111 0 000011111111 222 1688899999999998
Q ss_pred CCCCcccChHHHHHHHHhc-cC-CCHHHHHHHHHHHHHhcccccccC
Q 039167 442 FPKDVILKKDKLIELWMAQ-ET-KEMEEIGEEYFNVLASRSFFQEFG 486 (923)
Q Consensus 442 fp~~~~i~~~~Li~~W~ae-~~-~~~e~~~~~~~~~Lv~r~l~q~~~ 486 (923)
+. +...+....-+. +. .+ ......+++.|++.+++...+
T Consensus 302 ---g~--~~~~l~~~~~~~~g~~~~-~~~~~~~L~~L~~~gli~~~~ 342 (357)
T 2fna_A 302 ---CG--KWSDVKRALELEEGIEIS-DSEIYNYLTQLTKHSWIIKEG 342 (357)
T ss_dssp ---CB--CHHHHHHHHHHHHCSCCC-HHHHHHHHHHHHHTTSEEESS
T ss_pred ---CC--CHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhCCCEEecC
Confidence 22 444443322111 11 22 234667999999999987654
No 87
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.55 E-value=3.1e-14 Score=149.44 Aligned_cols=195 Identities=26% Similarity=0.308 Sum_probs=118.2
Q ss_pred CceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccc-cccCCCCCcEEeccCCCCccccchhh-hCC
Q 039167 532 GLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPT-NIEKLLHLKYLNLANQMEIERLPETL-CEL 609 (923)
Q Consensus 532 ~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~i-~~L 609 (923)
+.++++++++.+..+ |..+ .+.|+.|++++|. +..+|. .+.++++|++|+|++|. +..+|..+ ..+
T Consensus 17 ~~~~l~~~~~~l~~i--p~~~--~~~l~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l 84 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAI--PSNI--PADTKKLDLQSNK-------LSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKEL 84 (270)
T ss_dssp TTTEEECTTSCCSSC--CSCC--CTTCSEEECCSSC-------CSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSC
T ss_pred CCCEEEccCCCCCcc--CCCC--CCCCCEEECcCCC-------CCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCC
Confidence 456677776665542 2211 2457777777554 445543 56677777777777776 66666543 567
Q ss_pred CCCcEEecCCCccccccCcc-ccCCCCCCEEeCCCCcccccCC-cCCCCCCCCCcCCceEecccCCcccccccccCCCCC
Q 039167 610 YNLEHLNVNCCVKLRELPQG-IGRLRKLMYLDNECTVSLRYLP-VGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLNLL 687 (923)
Q Consensus 610 ~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L 687 (923)
++|++|++++|. +..+|.. +..+++|++|++++|. +..+| ..++.+++|
T Consensus 85 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L--------------------------- 135 (270)
T 2o6q_A 85 KNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKL--------------------------- 135 (270)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTC---------------------------
T ss_pred CCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCC---------------------------
Confidence 777777777766 5555543 4667777777777662 33332 223334444
Q ss_pred CCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCccc
Q 039167 688 RDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKNW 767 (923)
Q Consensus 688 ~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~ 767 (923)
+.|++++|.+... ....+..+++|+.|++++|.... +++..
T Consensus 136 ----------------------------~~L~Ls~n~l~~~---------~~~~~~~l~~L~~L~L~~n~l~~--~~~~~ 176 (270)
T 2o6q_A 136 ----------------------------TYLSLGYNELQSL---------PKGVFDKLTSLKELRLYNNQLKR--VPEGA 176 (270)
T ss_dssp ----------------------------CEEECCSSCCCCC---------CTTTTTTCTTCCEEECCSSCCSC--CCTTT
T ss_pred ----------------------------CEEECCCCcCCcc---------CHhHccCCcccceeEecCCcCcE--eChhH
Confidence 4444444332210 01124456777777777777666 65666
Q ss_pred ccccccccEEeEeCCCCCCCCCC-CCCCCCccceeccCCc
Q 039167 768 IMSLTNLRFLGLHEWRNCEHLPP-LGKLPSLESLYIAGMK 806 (923)
Q Consensus 768 ~~~l~~L~~L~L~~~~~~~~l~~-l~~L~~L~~L~L~~~~ 806 (923)
+..+++|+.|+|++|......+. +..+++|+.|++++|+
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 177 FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 77888888888888855433332 7778888888888876
No 88
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.54 E-value=2.6e-14 Score=150.18 Aligned_cols=196 Identities=24% Similarity=0.337 Sum_probs=140.0
Q ss_pred ccccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccch
Q 039167 525 DNIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPE 604 (923)
Q Consensus 525 ~~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~ 604 (923)
.....+++|+.|.+.++.+... +. +..+++|++|++++|. +..++ .++.+++|++|++++|. +..+|.
T Consensus 35 ~~~~~l~~L~~L~l~~~~i~~~--~~-l~~l~~L~~L~l~~n~-------l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~ 102 (272)
T 3rfs_A 35 VTQNELNSIDQIIANNSDIKSV--QG-IQYLPNVRYLALGGNK-------LHDIS-ALKELTNLTYLILTGNQ-LQSLPN 102 (272)
T ss_dssp ECHHHHTTCCEEECTTSCCCCC--TT-GGGCTTCCEEECTTSC-------CCCCG-GGTTCTTCCEEECTTSC-CCCCCT
T ss_pred cccccccceeeeeeCCCCcccc--cc-cccCCCCcEEECCCCC-------CCCch-hhcCCCCCCEEECCCCc-cCccCh
Confidence 3456788999999999886653 33 7889999999999776 55554 68899999999999998 777765
Q ss_pred h-hhCCCCCcEEecCCCccccccCcc-ccCCCCCCEEeCCCCcccccCCcC-CCCCCCCCcCCceEecccCCcccccccc
Q 039167 605 T-LCELYNLEHLNVNCCVKLRELPQG-IGRLRKLMYLDNECTVSLRYLPVG-IGKLIRLRRVKEFVVGGGYGRACSLGSL 681 (923)
Q Consensus 605 ~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~l~~L 681 (923)
. ++++++|++|++++|. +..+|.. ++.+++|++|++++| .+..+|.. ++.+++|++|++.
T Consensus 103 ~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~--------------- 165 (272)
T 3rfs_A 103 GVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLS--------------- 165 (272)
T ss_dssp TTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC---------------
T ss_pred hHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECC---------------
Confidence 4 6899999999999998 7676654 789999999999998 44555443 3555555555433
Q ss_pred cCCCCCCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCC
Q 039167 682 KKLNLLRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRN 761 (923)
Q Consensus 682 ~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~ 761 (923)
+|.+.. .....+..+++|+.|++++|....
T Consensus 166 ----------------------------------------~n~l~~---------~~~~~~~~l~~L~~L~L~~N~l~~- 195 (272)
T 3rfs_A 166 ----------------------------------------YNQLQS---------LPEGVFDKLTQLKDLRLYQNQLKS- 195 (272)
T ss_dssp ----------------------------------------SSCCCC---------CCTTTTTTCTTCCEEECCSSCCSC-
T ss_pred ----------------------------------------CCCcCc---------cCHHHhcCCccCCEEECCCCcCCc-
Confidence 222111 001123445667777777776665
Q ss_pred CcCcccccccccccEEeEeCCCCCCCCCCCCCCCCccceeccCCc
Q 039167 762 VVPKNWIMSLTNLRFLGLHEWRNCEHLPPLGKLPSLESLYIAGMK 806 (923)
Q Consensus 762 ~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~ 806 (923)
+++.++..+++|+.|+|++|.. .+.+|+|+.|.++.|.
T Consensus 196 -~~~~~~~~l~~L~~L~l~~N~~------~~~~~~l~~l~~~~n~ 233 (272)
T 3rfs_A 196 -VPDGVFDRLTSLQYIWLHDNPW------DCTCPGIRYLSEWINK 233 (272)
T ss_dssp -CCTTTTTTCTTCCEEECCSSCB------CCCTTTTHHHHHHHHH
T ss_pred -cCHHHHhCCcCCCEEEccCCCc------cccCcHHHHHHHHHHh
Confidence 6566677888888888888843 3456778888877665
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.53 E-value=2e-14 Score=153.74 Aligned_cols=191 Identities=20% Similarity=0.257 Sum_probs=131.6
Q ss_pred hhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchhhhCCCCCcEEecCCCccccccCcccc
Q 039167 552 FDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPETLCELYNLEHLNVNCCVKLRELPQGIG 631 (923)
Q Consensus 552 ~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~ 631 (923)
+..+++|++|++++|. +..+| .+..+++|++|+|++|. +..+|. +..+++|++|++++|. +..+| .+.
T Consensus 37 ~~~l~~L~~L~l~~~~-------i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~ 104 (308)
T 1h6u_A 37 QADLDGITTLSAFGTG-------VTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNP-LKNVS-AIA 104 (308)
T ss_dssp HHHHHTCCEEECTTSC-------CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGT
T ss_pred HHHcCCcCEEEeeCCC-------ccCch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCc-CCCch-hhc
Confidence 3456778888888654 55565 57778888888888887 777777 7888888888888876 66665 577
Q ss_pred CCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEecccCCcccccccccCCCCCCCceEeCCCCCCChhhhHHhhcCC
Q 039167 632 RLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLNLLRDCRIRGLGDVSDVDEARRAELEK 711 (923)
Q Consensus 632 ~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~ 711 (923)
.+++|++|++++| .+..+|. ++.+
T Consensus 105 ~l~~L~~L~l~~n-~l~~~~~-l~~l------------------------------------------------------ 128 (308)
T 1h6u_A 105 GLQSIKTLDLTST-QITDVTP-LAGL------------------------------------------------------ 128 (308)
T ss_dssp TCTTCCEEECTTS-CCCCCGG-GTTC------------------------------------------------------
T ss_pred CCCCCCEEECCCC-CCCCchh-hcCC------------------------------------------------------
Confidence 7888888888777 2333322 2233
Q ss_pred CCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCcccccccccccEEeEeCCCCCCCCCCC
Q 039167 712 KKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRNCEHLPPL 791 (923)
Q Consensus 712 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l 791 (923)
++|+.|++++|.+.. ...+..+++|+.|++++|.... +++ +..+++|+.|++++|.. ..++.+
T Consensus 129 -~~L~~L~l~~n~l~~-----------~~~l~~l~~L~~L~l~~n~l~~--~~~--l~~l~~L~~L~l~~n~l-~~~~~l 191 (308)
T 1h6u_A 129 -SNLQVLYLDLNQITN-----------ISPLAGLTNLQYLSIGNAQVSD--LTP--LANLSKLTTLKADDNKI-SDISPL 191 (308)
T ss_dssp -TTCCEEECCSSCCCC-----------CGGGGGCTTCCEEECCSSCCCC--CGG--GTTCTTCCEEECCSSCC-CCCGGG
T ss_pred -CCCCEEECCCCccCc-----------CccccCCCCccEEEccCCcCCC--Chh--hcCCCCCCEEECCCCcc-CcChhh
Confidence 344444454444321 0115567899999999998776 633 78899999999999954 456668
Q ss_pred CCCCCccceeccCCcCceEeCccccCCCCCCCCcccccCcccceeecccc
Q 039167 792 GKLPSLESLYIAGMKSVKRVGNEFLGVESDMDGSSVIAFAKLKKLTFYIM 841 (923)
Q Consensus 792 ~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~ 841 (923)
..+++|++|++++|. +..++. ...+++|+.|.+.++
T Consensus 192 ~~l~~L~~L~L~~N~-l~~~~~-------------l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 192 ASLPNLIEVHLKNNQ-ISDVSP-------------LANTSNLFIVTLTNQ 227 (308)
T ss_dssp GGCTTCCEEECTTSC-CCBCGG-------------GTTCTTCCEEEEEEE
T ss_pred cCCCCCCEEEccCCc-cCcccc-------------ccCCCCCCEEEccCC
Confidence 889999999999987 443331 125677777777655
No 90
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.53 E-value=2.6e-17 Score=194.57 Aligned_cols=338 Identities=15% Similarity=0.085 Sum_probs=183.5
Q ss_pred cccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccc-----c
Q 039167 528 EALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIER-----L 602 (923)
Q Consensus 528 ~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~-----l 602 (923)
..+++|+.|+++++.+....+......+++|++|+|++|. ...-..++..+.++++|++|+|++|. +.. +
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~----~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l 176 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE----GFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWL 176 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE----EEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGG
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC----CCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHH
Confidence 4678999999999986654444433479999999999774 11112255555689999999999997 443 4
Q ss_pred chhhhCCCCCcEEecCCCc-cc--cccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEeccc--------
Q 039167 603 PETLCELYNLEHLNVNCCV-KL--RELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVGGG-------- 671 (923)
Q Consensus 603 p~~i~~L~~L~~L~L~~~~-~l--~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~-------- 671 (923)
+.....+++|++|++++|. .+ ..++.-+..+++|++|++++|..+..+|..+..+++|+.|.+..+...
T Consensus 177 ~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 256 (594)
T 2p1m_B 177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG 256 (594)
T ss_dssp GGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH
T ss_pred HHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH
Confidence 4444477899999999986 12 123333456799999999998666666766777777777754322110
Q ss_pred ------------------CCccccccc-ccCCCCCCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCcc
Q 039167 672 ------------------YGRACSLGS-LKKLNLLRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEE 732 (923)
Q Consensus 672 ------------------~~~~~~l~~-L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 732 (923)
......+.. +..+++|+.|.+.... +. .......+..+++|+.|.++.+-
T Consensus 257 l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~--~~~l~~~~~~~~~L~~L~l~~~~-------- 325 (594)
T 2p1m_B 257 LSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQ--SYDLVKLLCQCPKLQRLWVLDYI-------- 325 (594)
T ss_dssp HHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CC--HHHHHHHHTTCTTCCEEEEEGGG--------
T ss_pred HHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CC--HHHHHHHHhcCCCcCEEeCcCcc--------
Confidence 000000100 1123444444444333 21 11222334455666666666541
Q ss_pred chHHHHhhcCCCCCCCCcEEEeeec------CCCCCcC----cccccccccccEEeEeCCCCCCC-CCCCC-CCCCccce
Q 039167 733 DEDERLLEALGPPPNLKELWINKYR------GKRNVVP----KNWIMSLTNLRFLGLHEWRNCEH-LPPLG-KLPSLESL 800 (923)
Q Consensus 733 ~~~~~~l~~l~~~~~L~~L~l~~~~------~~~~~~~----p~~~~~l~~L~~L~L~~~~~~~~-l~~l~-~L~~L~~L 800 (923)
.+..+......+++|++|++.++. ... +. ......+++|+.|.+..+..... +..+. .+|+|+.|
T Consensus 326 -~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~--l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L 402 (594)
T 2p1m_B 326 -EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVA--LTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRF 402 (594)
T ss_dssp -HHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSC--CCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEE
T ss_pred -CHHHHHHHHHhCCCCCEEEEecCcccccccCCC--CCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCccee
Confidence 111111122235566666664321 000 10 11111356666665544432211 11122 46677777
Q ss_pred ecc-----CCcCceEeCccccCCCCCCCCcccccCcccceeeccccccccccccccccccccc-cCcccceeeecccccC
Q 039167 801 YIA-----GMKSVKRVGNEFLGVESDMDGSSVIAFAKLKKLTFYIMEELEEWDLGTAIKGEII-IMPRLSSLTIWSCRKL 874 (923)
Q Consensus 801 ~L~-----~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~-~lp~L~~L~l~~c~~l 874 (923)
+++ +|..+...+....- ......+++|+.|.+.+ ++.. .....+. .+++|+.|++++|...
T Consensus 403 ~L~~~~~~~~~~l~~~~~~~~~------~~l~~~~~~L~~L~L~~--~l~~-----~~~~~l~~~~~~L~~L~L~~~~i~ 469 (594)
T 2p1m_B 403 RLCIIEPKAPDYLTLEPLDIGF------GAIVEHCKDLRRLSLSG--LLTD-----KVFEYIGTYAKKMEMLSVAFAGDS 469 (594)
T ss_dssp EEEESSTTCCCTTTCCCTHHHH------HHHHHHCTTCCEEECCS--SCCH-----HHHHHHHHHCTTCCEEEEESCCSS
T ss_pred EeecccCCCcccccCCchhhHH------HHHHhhCCCccEEeecC--cccH-----HHHHHHHHhchhccEeeccCCCCc
Confidence 776 33333322110000 00012467777777753 2222 1112222 3889999999999742
Q ss_pred CCCCcCC-CCCCCccEEEeccCCch
Q 039167 875 KALPDHL-LQKSTLQKLEIWGGCHI 898 (923)
Q Consensus 875 ~~lp~~l-~~l~sL~~L~l~~~c~~ 898 (923)
...+..+ ..+++|++|++ ++|+.
T Consensus 470 ~~~~~~l~~~~~~L~~L~L-~~n~~ 493 (594)
T 2p1m_B 470 DLGMHHVLSGCDSLRKLEI-RDCPF 493 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEE-ESCSC
T ss_pred HHHHHHHHhcCCCcCEEEC-cCCCC
Confidence 2222222 55899999999 89985
No 91
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.52 E-value=1.4e-13 Score=144.29 Aligned_cols=77 Identities=26% Similarity=0.355 Sum_probs=49.8
Q ss_pred cccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccch-hhhCCCCCcEEecCCCccccccCccc-cCCC
Q 039167 557 CLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPE-TLCELYNLEHLNVNCCVKLRELPQGI-GRLR 634 (923)
Q Consensus 557 ~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~ 634 (923)
.++.++++++. +..+|..+. .+|++|+|++|. +..+|. .+.++++|++|++++|. +..+|..+ ..++
T Consensus 17 ~~~~l~~~~~~-------l~~ip~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~ 85 (270)
T 2o6q_A 17 NKNSVDCSSKK-------LTAIPSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELK 85 (270)
T ss_dssp TTTEEECTTSC-------CSSCCSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCT
T ss_pred CCCEEEccCCC-------CCccCCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCC
Confidence 45667776443 556665543 467777777776 666653 56777777777777765 66666543 5677
Q ss_pred CCCEEeCCCC
Q 039167 635 KLMYLDNECT 644 (923)
Q Consensus 635 ~L~~L~l~~~ 644 (923)
+|++|++++|
T Consensus 86 ~L~~L~l~~n 95 (270)
T 2o6q_A 86 NLETLWVTDN 95 (270)
T ss_dssp TCCEEECCSS
T ss_pred CCCEEECCCC
Confidence 7777777666
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.52 E-value=8.7e-14 Score=143.11 Aligned_cols=72 Identities=22% Similarity=0.399 Sum_probs=46.2
Q ss_pred cccccccccCCCCCcEEeccCCCCccccch-hhhCCCCCcEEecCCCccccccCc-cccCCCCCCEEeCCCCcccccC
Q 039167 575 IKEVPTNIEKLLHLKYLNLANQMEIERLPE-TLCELYNLEHLNVNCCVKLRELPQ-GIGRLRKLMYLDNECTVSLRYL 650 (923)
Q Consensus 575 ~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~ 650 (923)
+..+|. +. .+|++|++++|. +..+|. .++.+++|++|++++|..+..+|. .+..+++|++|++++|..+..+
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i 96 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI 96 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred ccccCC-CC--CcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence 455555 33 367777777777 666665 567777777777777754666654 5667777777777762233333
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.51 E-value=2e-14 Score=147.96 Aligned_cols=96 Identities=17% Similarity=0.326 Sum_probs=61.9
Q ss_pred cccEEeccccCCcccccccccccc-cccCCCCCcEEeccCCCCccccch-hhhCCCCCcEEecCCCccccccCc-cccCC
Q 039167 557 CLRALKLEVHNERLPEDFIKEVPT-NIEKLLHLKYLNLANQMEIERLPE-TLCELYNLEHLNVNCCVKLRELPQ-GIGRL 633 (923)
Q Consensus 557 ~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L 633 (923)
.|++|++++|. +..+|. .+..+++|++|++++|..++.+|. .+.++++|++|++++|..+..+|. .+..+
T Consensus 32 ~l~~L~l~~n~-------l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l 104 (239)
T 2xwt_C 32 STQTLKLIETH-------LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL 104 (239)
T ss_dssp TCCEEEEESCC-------CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECC
T ss_pred cccEEEEeCCc-------ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCC
Confidence 67777777554 556654 567777788888877754666664 567777888888877333666653 46777
Q ss_pred CCCCEEeCCCCcccccCCcCCCCCCCCC
Q 039167 634 RKLMYLDNECTVSLRYLPVGIGKLIRLR 661 (923)
Q Consensus 634 ~~L~~L~l~~~~~l~~~p~~i~~L~~L~ 661 (923)
++|++|++++| .+..+|. ++.+++|+
T Consensus 105 ~~L~~L~l~~n-~l~~lp~-~~~l~~L~ 130 (239)
T 2xwt_C 105 PLLKFLGIFNT-GLKMFPD-LTKVYSTD 130 (239)
T ss_dssp TTCCEEEEEEE-CCCSCCC-CTTCCBCC
T ss_pred CCCCEEeCCCC-CCccccc-cccccccc
Confidence 77888877776 3444543 43333333
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.49 E-value=1.1e-13 Score=148.35 Aligned_cols=229 Identities=17% Similarity=0.080 Sum_probs=150.1
Q ss_pred cCCceEEEeCCCCCCCccchHH--hhcCCcccEEeccccCCcccccccccccccc--cCCCCCcEEeccCCCCccc-cc-
Q 039167 530 LRGLRSLLLESTKHSSVILPQL--FDKLTCLRALKLEVHNERLPEDFIKEVPTNI--EKLLHLKYLNLANQMEIER-LP- 603 (923)
Q Consensus 530 ~~~Lr~L~l~~~~~~~~~l~~~--~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i--~~l~~L~~L~L~~~~~l~~-lp- 603 (923)
...++.+.+.++......+... +..++.|++|++++|. .....|..+ ..+.+|++|+|++|. +.. .|
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~------l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~ 135 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLK------ITGTMPPLPLEATGLALSSLRLRNVS-WATGRSW 135 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCC------CBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSS
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCE------eccchhhhhhhccCCCCCEEEeeccc-ccchhhh
Confidence 3456777887776543322221 2345679999999776 233556666 889999999999998 553 33
Q ss_pred ---hhhhCCCCCcEEecCCCcccccc-CccccCCCCCCEEeCCCCccccc--CC--cCCCCCCCCCcCCceEecccCCcc
Q 039167 604 ---ETLCELYNLEHLNVNCCVKLREL-PQGIGRLRKLMYLDNECTVSLRY--LP--VGIGKLIRLRRVKEFVVGGGYGRA 675 (923)
Q Consensus 604 ---~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~--~p--~~i~~L~~L~~L~~~~~~~~~~~~ 675 (923)
..+..+++|++|++++|. +..+ |..++.+++|++|++++|..... ++ ..++.+++|++|++..+...
T Consensus 136 ~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~---- 210 (310)
T 4glp_A 136 LAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME---- 210 (310)
T ss_dssp HHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC----
T ss_pred hHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC----
Confidence 345678999999999998 5554 46788999999999999853321 22 22356777777765433221
Q ss_pred cccccccCCCCCCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEee
Q 039167 676 CSLGSLKKLNLLRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINK 755 (923)
Q Consensus 676 ~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~ 755 (923)
.........+..+++|+.|++++|.+..... .....+..+++|++|++++
T Consensus 211 ------------------------~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p------~~~~~~~~~~~L~~L~Ls~ 260 (310)
T 4glp_A 211 ------------------------TPTGVCAALAAAGVQPHSLDLSHNSLRATVN------PSAPRCMWSSALNSLNLSF 260 (310)
T ss_dssp ------------------------CHHHHHHHHHHHTCCCSSEECTTSCCCCCCC------SCCSSCCCCTTCCCEECCS
T ss_pred ------------------------chHHHHHHHHhcCCCCCEEECCCCCCCccch------hhHHhccCcCcCCEEECCC
Confidence 1111111123456788888888887643100 0011223347899999998
Q ss_pred ecCCCCCcCcccccccccccEEeEeCCCCCCCCCCCCCCCCccceeccCCc
Q 039167 756 YRGKRNVVPKNWIMSLTNLRFLGLHEWRNCEHLPPLGKLPSLESLYIAGMK 806 (923)
Q Consensus 756 ~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~ 806 (923)
|.... + |.++. ++|+.|+|++|... .+|.+..+++|+.|++++|+
T Consensus 261 N~l~~--l-p~~~~--~~L~~L~Ls~N~l~-~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 261 AGLEQ--V-PKGLP--AKLRVLDLSSNRLN-RAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp SCCCS--C-CSCCC--SCCSCEECCSCCCC-SCCCTTSCCCCSCEECSSTT
T ss_pred CCCCc--h-hhhhc--CCCCEEECCCCcCC-CCchhhhCCCccEEECcCCC
Confidence 88876 7 54443 78999999988544 45667888999999998886
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.48 E-value=1.2e-15 Score=166.22 Aligned_cols=257 Identities=15% Similarity=0.142 Sum_probs=168.5
Q ss_pred CcccEEeccccCCcccccccccccccccCC--CCCcEEeccCCCCccccchhhhCCCCCcEEecCCCcccc-c-cCcccc
Q 039167 556 TCLRALKLEVHNERLPEDFIKEVPTNIEKL--LHLKYLNLANQMEIERLPETLCELYNLEHLNVNCCVKLR-E-LPQGIG 631 (923)
Q Consensus 556 ~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l--~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~-~-lp~~i~ 631 (923)
..++.|+++++. +. |..+..+ .++++|++++|. +...+..+.++++|++|++++|. +. . +|..+.
T Consensus 47 ~~~~~l~l~~~~-------~~--~~~~~~~~~~~l~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~ 115 (336)
T 2ast_B 47 SLWQTLDLTGKN-------LH--PDVTGRLLSQGVIAFRCPRSF-MDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILS 115 (336)
T ss_dssp TTSSEEECTTCB-------CC--HHHHHHHHHTTCSEEECTTCE-ECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHT
T ss_pred hhheeecccccc-------CC--HHHHHhhhhccceEEEcCCcc-ccccchhhccCCCCCEEEccCCC-cCHHHHHHHHh
Confidence 357889998654 22 4556666 889999999998 77666668889999999999987 44 3 777888
Q ss_pred CCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEecccCCcccccccccCCCCCCCceEeCCCCCCChhhhHHhhcCC
Q 039167 632 RLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLNLLRDCRIRGLGDVSDVDEARRAELEK 711 (923)
Q Consensus 632 ~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~ 711 (923)
.+++|++|++++|......|..++.+++|++|++..+. .+. .......+..
T Consensus 116 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~---------------------------~l~--~~~l~~~~~~ 166 (336)
T 2ast_B 116 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS---------------------------GFS--EFALQTLLSS 166 (336)
T ss_dssp TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCB---------------------------SCC--HHHHHHHHHH
T ss_pred hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCC---------------------------CCC--HHHHHHHHhc
Confidence 99999999999985433455556666666666543221 111 0122334556
Q ss_pred CCCCCcEEEEEc-CCCCCCCccchHHHHhhcCCCCC-CCCcEEEeeec--CCCCCcCcccccccccccEEeEeCCCCCC-
Q 039167 712 KKNLFELKLHFD-QAGRRENEEDEDERLLEALGPPP-NLKELWINKYR--GKRNVVPKNWIMSLTNLRFLGLHEWRNCE- 786 (923)
Q Consensus 712 ~~~L~~L~l~~~-~~~~~~~~~~~~~~~l~~l~~~~-~L~~L~l~~~~--~~~~~~~p~~~~~l~~L~~L~L~~~~~~~- 786 (923)
+++|+.|++++| .+. ...+...+..++ +|++|++++|. .....+ |..+..+++|+.|++++|....
T Consensus 167 ~~~L~~L~l~~~~~l~--------~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~ 237 (336)
T 2ast_B 167 CSRLDELNLSWCFDFT--------EKHVQVAVAHVSETITQLNLSGYRKNLQKSDL-STLVRRCPNLVHLDLSDSVMLKN 237 (336)
T ss_dssp CTTCCEEECCCCTTCC--------HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHH-HHHHHHCTTCSEEECTTCTTCCG
T ss_pred CCCCCEEcCCCCCCcC--------hHHHHHHHHhcccCCCEEEeCCCcccCCHHHH-HHHHhhCCCCCEEeCCCCCcCCH
Confidence 788999999888 532 223445556677 99999999884 221114 5566789999999999997432
Q ss_pred -CCCCCCCCCCccceeccCCcCceEeCccccCCCCCCCCcccccCcccceeeccccccccccccccccccccccC-cccc
Q 039167 787 -HLPPLGKLPSLESLYIAGMKSVKRVGNEFLGVESDMDGSSVIAFAKLKKLTFYIMEELEEWDLGTAIKGEIIIM-PRLS 864 (923)
Q Consensus 787 -~l~~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l-p~L~ 864 (923)
.++.++.+++|++|++++|..+...+.. ....+++|+.|.+.+| +.... +..+ .+|.
T Consensus 238 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-----------~l~~~~~L~~L~l~~~--i~~~~--------~~~l~~~l~ 296 (336)
T 2ast_B 238 DCFQEFFQLNYLQHLSLSRCYDIIPETLL-----------ELGEIPTLKTLQVFGI--VPDGT--------LQLLKEALP 296 (336)
T ss_dssp GGGGGGGGCTTCCEEECTTCTTCCGGGGG-----------GGGGCTTCCEEECTTS--SCTTC--------HHHHHHHST
T ss_pred HHHHHHhCCCCCCEeeCCCCCCCCHHHHH-----------HHhcCCCCCEEeccCc--cCHHH--------HHHHHhhCc
Confidence 2445888899999999998633211110 1125778888888766 22211 1122 3466
Q ss_pred eeeecccccCCCCCcCCC
Q 039167 865 SLTIWSCRKLKALPDHLL 882 (923)
Q Consensus 865 ~L~l~~c~~l~~lp~~l~ 882 (923)
.|++++|......|..+.
T Consensus 297 ~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 297 HLQINCSHFTTIARPTIG 314 (336)
T ss_dssp TSEESCCCSCCTTCSSCS
T ss_pred ceEEecccCccccCCccc
Confidence 667777755445555443
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.48 E-value=1e-15 Score=170.01 Aligned_cols=249 Identities=17% Similarity=0.085 Sum_probs=129.6
Q ss_pred cccccccCCceEEEeCCCCCCCcc---chHHhhcCCcccEEeccccCCc-ccc---cccccccccccCCCCCcEEeccCC
Q 039167 524 YDNIEALRGLRSLLLESTKHSSVI---LPQLFDKLTCLRALKLEVHNER-LPE---DFIKEVPTNIEKLLHLKYLNLANQ 596 (923)
Q Consensus 524 ~~~~~~~~~Lr~L~l~~~~~~~~~---l~~~~~~~~~Lr~L~L~~~~~~-~~~---~~~~~lp~~i~~l~~L~~L~L~~~ 596 (923)
...+..+++|++|++++|.+.... +...+.++++|++|+|++|... +.+ ..+..+...+..+++|++|+|++|
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 345566778888888887755432 2233567788888888865410 000 011222233467788888888888
Q ss_pred CCccc-----cchhhhCCCCCcEEecCCCcccc-----ccCccccCC---------CCCCEEeCCCCccc-ccCC---cC
Q 039167 597 MEIER-----LPETLCELYNLEHLNVNCCVKLR-----ELPQGIGRL---------RKLMYLDNECTVSL-RYLP---VG 653 (923)
Q Consensus 597 ~~l~~-----lp~~i~~L~~L~~L~L~~~~~l~-----~lp~~i~~L---------~~L~~L~l~~~~~l-~~~p---~~ 653 (923)
. +.. +|..+.++++|++|+|++|. +. .++..+..+ ++|++|++++|... ..+| ..
T Consensus 105 ~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 105 A-FGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp C-CCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred c-CCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 7 554 67777888888888888876 43 233334444 77888888777322 1222 22
Q ss_pred CCCCCCCCcCCceEecccCCcccccccccCCCCCCCceEeCCCCCCChhhhHHh-hcCCCCCCCcEEEEEcCCCCCCCcc
Q 039167 654 IGKLIRLRRVKEFVVGGGYGRACSLGSLKKLNLLRDCRIRGLGDVSDVDEARRA-ELEKKKNLFELKLHFDQAGRRENEE 732 (923)
Q Consensus 654 i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~ 732 (923)
+..+++|++|++..+.... ........ .+..+++|+.|++++|.++.
T Consensus 183 l~~~~~L~~L~L~~n~l~~---------------------------~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~----- 230 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRP---------------------------EGIEHLLLEGLAYCQELKVLDLQDNTFTH----- 230 (386)
T ss_dssp HHHCTTCCEEECCSSCCCH---------------------------HHHHHHHHTTGGGCTTCCEEECCSSCCHH-----
T ss_pred HHhCCCcCEEECcCCCCCH---------------------------hHHHHHHHHHhhcCCCccEEECcCCCCCc-----
Confidence 3333444444332221110 00001111 44455666666666655311
Q ss_pred chHHHHhhcCCCCCCCCcEEEeeecCCCCCc--Cccccc--ccccccEEeEeCCCCCC----CCCC-C-CCCCCccceec
Q 039167 733 DEDERLLEALGPPPNLKELWINKYRGKRNVV--PKNWIM--SLTNLRFLGLHEWRNCE----HLPP-L-GKLPSLESLYI 802 (923)
Q Consensus 733 ~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~--~p~~~~--~l~~L~~L~L~~~~~~~----~l~~-l-~~L~~L~~L~L 802 (923)
.....++..+..+++|+.|+|++|....... .+.++. .+++|+.|+|++|.... .+|. + .++++|++|++
T Consensus 231 ~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 231 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence 1112344455556666666666665433000 022332 25666666666664433 1333 2 34566666666
Q ss_pred cCCc
Q 039167 803 AGMK 806 (923)
Q Consensus 803 ~~~~ 806 (923)
++|+
T Consensus 311 ~~N~ 314 (386)
T 2ca6_A 311 NGNR 314 (386)
T ss_dssp TTSB
T ss_pred cCCc
Confidence 6655
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.45 E-value=1.6e-13 Score=149.92 Aligned_cols=99 Identities=20% Similarity=0.209 Sum_probs=58.0
Q ss_pred CCCcEEEeeecCCCCCcCcccccccccccEEeEeCCCCCCCCCC--CCCCCCccceeccCCcCceEeCccccCCCCCCCC
Q 039167 747 NLKELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRNCEHLPP--LGKLPSLESLYIAGMKSVKRVGNEFLGVESDMDG 824 (923)
Q Consensus 747 ~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~ 824 (923)
.++.|++++|.... +++. .....+|+.|.+.++...+.+|. ++.+++|+.|++++|. ++.++..
T Consensus 155 ~l~~L~L~~N~i~~--i~~~-~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~---------- 220 (350)
T 4ay9_X 155 ESVILWLNKNGIQE--IHNS-AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSY---------- 220 (350)
T ss_dssp SCEEEECCSSCCCE--ECTT-SSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSS----------
T ss_pred hhhhhccccccccC--CChh-hccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChh----------
Confidence 45566666666555 5333 22445677777766556666654 5677777777777765 5544421
Q ss_pred cccccCcccceeeccccccccccccccccccccccCcccceeeecc
Q 039167 825 SSVIAFAKLKKLTFYIMEELEEWDLGTAIKGEIIIMPRLSSLTIWS 870 (923)
Q Consensus 825 ~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~lp~L~~L~l~~ 870 (923)
.|.+|+.|...++.+++... .+..+++|+.+++.+
T Consensus 221 ----~~~~L~~L~~l~~~~l~~lP-------~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 221 ----GLENLKKLRARSTYNLKKLP-------TLEKLVALMEASLTY 255 (350)
T ss_dssp ----SCTTCCEEECTTCTTCCCCC-------CTTTCCSCCEEECSC
T ss_pred ----hhccchHhhhccCCCcCcCC-------CchhCcChhhCcCCC
Confidence 46666666666555554443 133566666666644
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.44 E-value=5.4e-15 Score=164.21 Aligned_cols=261 Identities=16% Similarity=0.080 Sum_probs=170.0
Q ss_pred ccceEEEEEEecCCCCC----ccccccccCCceEEEeCCCCCCCc--cchH-------HhhcCCcccEEeccccCCcccc
Q 039167 506 EKKILHLTLAIGCGPMP----IYDNIEALRGLRSLLLESTKHSSV--ILPQ-------LFDKLTCLRALKLEVHNERLPE 572 (923)
Q Consensus 506 ~~~~~~l~l~~~~~~~~----~~~~~~~~~~Lr~L~l~~~~~~~~--~l~~-------~~~~~~~Lr~L~L~~~~~~~~~ 572 (923)
...++++.+..+..... ....+..+++|++|++++|..... .+|. .+..+++|++|+|++|.. ..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l--~~ 108 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF--GP 108 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC--CT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC--CH
Confidence 34577887776654221 112366789999999999754322 1222 347899999999998761 12
Q ss_pred cccccccccccCCCCCcEEeccCCCCcc-----ccchhhhCC---------CCCcEEecCCCcccc--ccC---ccccCC
Q 039167 573 DFIKEVPTNIEKLLHLKYLNLANQMEIE-----RLPETLCEL---------YNLEHLNVNCCVKLR--ELP---QGIGRL 633 (923)
Q Consensus 573 ~~~~~lp~~i~~l~~L~~L~L~~~~~l~-----~lp~~i~~L---------~~L~~L~L~~~~~l~--~lp---~~i~~L 633 (923)
.....+|..+..+++|++|+|++|. +. .++..+..+ ++|++|++++|. +. .+| ..+..+
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTFQSH 186 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHHHHHhC
Confidence 2233478889999999999999998 54 344445555 899999999997 53 455 567789
Q ss_pred CCCCEEeCCCCcccc------cCCcCCCCCCCCCcCCceEecccCCcccccccccCCCCCCCceEeCCCCCCChhhhHHh
Q 039167 634 RKLMYLDNECTVSLR------YLPVGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLNLLRDCRIRGLGDVSDVDEARRA 707 (923)
Q Consensus 634 ~~L~~L~l~~~~~l~------~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~ 707 (923)
++|++|++++|. +. ..|..+..+++|+.|++..+.... .....+..
T Consensus 187 ~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~---------------------------~g~~~l~~ 238 (386)
T 2ca6_A 187 RLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH---------------------------LGSSALAI 238 (386)
T ss_dssp TTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH---------------------------HHHHHHHH
T ss_pred CCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCc---------------------------HHHHHHHH
Confidence 999999999994 33 233366677777777654332210 00123334
Q ss_pred hcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcC--CCCCCCCcEEEeeecCCCC---CcCcccc-cccccccEEeEeC
Q 039167 708 ELEKKKNLFELKLHFDQAGRRENEEDEDERLLEAL--GPPPNLKELWINKYRGKRN---VVPKNWI-MSLTNLRFLGLHE 781 (923)
Q Consensus 708 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l--~~~~~L~~L~l~~~~~~~~---~~~p~~~-~~l~~L~~L~L~~ 781 (923)
.+..+++|+.|++++|.+.. .....+...+ ..+++|+.|+|++|..... .+ |.++ .++++|+.|+|++
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~-----~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l-~~~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSA-----RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL-KTVIDEKMPDLLFLELNG 312 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCH-----HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH-HHHHHHHCTTCCEEECTT
T ss_pred HHccCCCcCEEECCCCCCch-----hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHH-HHHHHhcCCCceEEEccC
Confidence 56667788888888877532 1222345555 4488999999988875531 13 4445 5689999999999
Q ss_pred CCCCCCCCC----CCCCCCccceeccC
Q 039167 782 WRNCEHLPP----LGKLPSLESLYIAG 804 (923)
Q Consensus 782 ~~~~~~l~~----l~~L~~L~~L~L~~ 804 (923)
|......+. ...++.++.+.+..
T Consensus 313 N~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 313 NRFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp SBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred CcCCcchhHHHHHHHHhhhcCcchhhh
Confidence 976544321 12345555555544
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.42 E-value=3.2e-13 Score=143.02 Aligned_cols=38 Identities=26% Similarity=0.290 Sum_probs=20.0
Q ss_pred ccccccccEEeEeCCCCCCCCCCCCCCCCccceeccCCc
Q 039167 768 IMSLTNLRFLGLHEWRNCEHLPPLGKLPSLESLYIAGMK 806 (923)
Q Consensus 768 ~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~ 806 (923)
+..+++|+.|+|++|. ...++.+..+++|+.|++++|+
T Consensus 174 l~~l~~L~~L~L~~N~-i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 174 LAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp GTTCTTCCEEECCSSC-CCBCGGGTTCTTCSEEEEEEEE
T ss_pred hcCCCccCEEECCCCc-CCCChhhccCCCCCEEECcCCc
Confidence 4455555555555552 2334445555556666555554
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.41 E-value=4.2e-13 Score=156.06 Aligned_cols=170 Identities=21% Similarity=0.246 Sum_probs=90.5
Q ss_pred hcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchhhhCCCCCcEEecCCCccccccCccccC
Q 039167 553 DKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPETLCELYNLEHLNVNCCVKLRELPQGIGR 632 (923)
Q Consensus 553 ~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 632 (923)
..+++|+.|++++|. +..+| .+..|++|++|+|++|. +..+|. ++.+++|+.|+|++|. +..+| .+..
T Consensus 40 ~~L~~L~~L~l~~n~-------i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~ 107 (605)
T 1m9s_A 40 NELNSIDQIIANNSD-------IKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKD 107 (605)
T ss_dssp HHHTTCCCCBCTTCC-------CCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTT
T ss_pred hcCCCCCEEECcCCC-------CCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCC-CCCCh-hhcc
Confidence 455556666666443 44444 35566666666666665 555555 6666666666666664 55544 4566
Q ss_pred CCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEecccCCcccccccccCCCCCCCceEeCCCCCCChhhhHHhhcCCC
Q 039167 633 LRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLNLLRDCRIRGLGDVSDVDEARRAELEKK 712 (923)
Q Consensus 633 L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~ 712 (923)
|++|++|++++| .+..+| .++.+++|+.|++..+.... + ..+..+
T Consensus 108 l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~l~~--------l-------------------------~~l~~l 152 (605)
T 1m9s_A 108 LKKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGNNKITD--------I-------------------------TVLSRL 152 (605)
T ss_dssp CTTCCEEECTTS-CCCCCG-GGGGCTTCSEEECCSSCCCC--------C-------------------------GGGGSC
T ss_pred CCCCCEEEecCC-CCCCCc-cccCCCccCEEECCCCccCC--------c-------------------------hhhccc
Confidence 666666666665 233322 24444444444332211110 0 112334
Q ss_pred CCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCcccccccccccEEeEeCCCC
Q 039167 713 KNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRN 784 (923)
Q Consensus 713 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~ 784 (923)
++|+.|+|+.|.+.. ... +..+++|+.|+|++|.... + | .+..+++|+.|+|++|..
T Consensus 153 ~~L~~L~Ls~N~l~~----------~~~-l~~l~~L~~L~Ls~N~i~~--l-~-~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 153 TKLDTLSLEDNQISD----------IVP-LAGLTKLQNLYLSKNHISD--L-R-ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp TTCSEEECCSSCCCC----------CGG-GTTCTTCCEEECCSSCCCB--C-G-GGTTCTTCSEEECCSEEE
T ss_pred CCCCEEECcCCcCCC----------chh-hccCCCCCEEECcCCCCCC--C-h-HHccCCCCCEEEccCCcC
Confidence 556666666555322 011 4556677777777766655 4 3 356677777777777654
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.40 E-value=1.6e-12 Score=141.81 Aligned_cols=229 Identities=16% Similarity=0.101 Sum_probs=144.1
Q ss_pred ccccccccccCCCCCcEEeccCCCCccccch-hhhCCCCCcEEecCCCccccccCcc-ccCCCCCCEEeCCCCcccccCC
Q 039167 574 FIKEVPTNIEKLLHLKYLNLANQMEIERLPE-TLCELYNLEHLNVNCCVKLRELPQG-IGRLRKLMYLDNECTVSLRYLP 651 (923)
Q Consensus 574 ~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p 651 (923)
.+.++|..+ ..++++|+|++|. ++.+|. .+.+|++|++|+|++|..++.+|.+ +..+++|.++...+++.+..+|
T Consensus 20 ~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~ 96 (350)
T 4ay9_X 20 KVTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN 96 (350)
T ss_dssp TCCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC
T ss_pred CCCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC
Confidence 366777655 3567788888877 777775 4677788888888777644556543 5667776654433333444443
Q ss_pred -cCCCCCCCCCcCCceEecccCCcccccccccCCCCCCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCC
Q 039167 652 -VGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLNLLRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRREN 730 (923)
Q Consensus 652 -~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 730 (923)
..++.+++|+.|++..+.... +..
T Consensus 97 ~~~f~~l~~L~~L~l~~n~l~~--------~~~----------------------------------------------- 121 (350)
T 4ay9_X 97 PEAFQNLPNLQYLLISNTGIKH--------LPD----------------------------------------------- 121 (350)
T ss_dssp TTSBCCCTTCCEEEEEEECCSS--------CCC-----------------------------------------------
T ss_pred chhhhhcccccccccccccccc--------CCc-----------------------------------------------
Confidence 334555555555554433211 000
Q ss_pred ccchHHHHhhcCCCCCCCCcEEEeeec-CCCCCcCccccccc-ccccEEeEeCCCCCCCCCCCCCCCCccceeccCCcCc
Q 039167 731 EEDEDERLLEALGPPPNLKELWINKYR-GKRNVVPKNWIMSL-TNLRFLGLHEWRNCEHLPPLGKLPSLESLYIAGMKSV 808 (923)
Q Consensus 731 ~~~~~~~~l~~l~~~~~L~~L~l~~~~-~~~~~~~p~~~~~l-~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l 808 (923)
..+....++..|++.++. ... +++..+..+ ..++.|+|++|......+.....++|+.|.+.++..+
T Consensus 122 ---------~~~~~~~~l~~l~l~~~~~i~~--l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l 190 (350)
T 4ay9_X 122 ---------VHKIHSLQKVLLDIQDNINIHT--IERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNL 190 (350)
T ss_dssp ---------CTTCCBSSCEEEEEESCTTCCE--ECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTC
T ss_pred ---------hhhcccchhhhhhhcccccccc--ccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcc
Confidence 001112233444444322 222 434445544 4689999999965443334566788999999987778
Q ss_pred eEeCccccCCCCCCCCcccccCcccceeeccccccccccccccccccccccCcccceeeecccccCCCCCcCCCCCCCcc
Q 039167 809 KRVGNEFLGVESDMDGSSVIAFAKLKKLTFYIMEELEEWDLGTAIKGEIIIMPRLSSLTIWSCRKLKALPDHLLQKSTLQ 888 (923)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~sL~ 888 (923)
+.++...+. .+++|+.|.++++ .++.+.. ..+.+|++|.+.+|..++.+|. +..+++|+
T Consensus 191 ~~i~~~~f~-----------~l~~L~~LdLs~N-~l~~lp~--------~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~ 249 (350)
T 4ay9_X 191 EELPNDVFH-----------GASGPVILDISRT-RIHSLPS--------YGLENLKKLRARSTYNLKKLPT-LEKLVALM 249 (350)
T ss_dssp CCCCTTTTT-----------TEECCSEEECTTS-CCCCCCS--------SSCTTCCEEECTTCTTCCCCCC-TTTCCSCC
T ss_pred cCCCHHHhc-----------cCcccchhhcCCC-CcCccCh--------hhhccchHhhhccCCCcCcCCC-chhCcChh
Confidence 877754332 5678888888765 4544432 2478899999999999999995 78899999
Q ss_pred EEEe
Q 039167 889 KLEI 892 (923)
Q Consensus 889 ~L~l 892 (923)
.+++
T Consensus 250 ~l~l 253 (350)
T 4ay9_X 250 EASL 253 (350)
T ss_dssp EEEC
T ss_pred hCcC
Confidence 9999
No 102
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.40 E-value=3.7e-11 Score=133.38 Aligned_cols=291 Identities=13% Similarity=0.036 Sum_probs=180.1
Q ss_pred CCceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccc------cceEEEEEeCCcccHH
Q 039167 176 ESEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKN------FEKRIWVCVSDPFDEF 249 (923)
Q Consensus 176 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~wv~~s~~~~~~ 249 (923)
+..++||+.+++++..++...- .......+.|+|++|+||||+|+.+++. .... -...+|+++....+..
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~ 93 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPAL--RGEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRETPY 93 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGT--SSCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCSHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCCHH
Confidence 3679999999999999885431 1235568999999999999999999884 2221 1245688888878888
Q ss_pred HHHHHHHHHHhCCCCC-CcCHHHHHHHHHHHh--cCCceEEEecCCCCCChh--hHHHhHHhhhcC-----CCCcEEEEE
Q 039167 250 RIARAIIEALTGCLPN-FVEFQSLMQHIQKHV--AGKKLLLVLDDVWNENFH--KWEQFNNCLKNC-----LYGSKILIT 319 (923)
Q Consensus 250 ~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~--~~~~l~~~l~~~-----~~gs~iivT 319 (923)
.++..++.+++...+. ..........+.+.+ .+++.+|||||++.-... ..+.+...+... ..+..+|.|
T Consensus 94 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~ 173 (387)
T 2v1u_A 94 RVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGI 173 (387)
T ss_dssp HHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEE
Confidence 9999999999764332 233555566666666 456889999999643211 223344433322 345678888
Q ss_pred ecchHHH----HHh-ccc--ceEeCCCCChHHHHHHHHHhhc---CCCCccchhhHHHHHHHHHHhcC---CChH-HHHH
Q 039167 320 TRKEAVA----RIM-GST--NIISVNVLSGMECWLVFESLAF---VGKSMEERENLEKIGREITRKCK---GLPL-ATKT 385 (923)
Q Consensus 320 tR~~~v~----~~~-~~~--~~~~l~~L~~~~~~~lf~~~a~---~~~~~~~~~~~~~~~~~i~~~c~---GlPL-ai~~ 385 (923)
|+..... ... ... ..+.+++++.++..+++...+. ... ...+ +..+.+++.++ |.|- ++..
T Consensus 174 t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~~G~~r~~~~~ 248 (387)
T 2v1u_A 174 TNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPG--VLDP---DVVPLCAALAAREHGDARRALDL 248 (387)
T ss_dssp CSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTT--TBCS---SHHHHHHHHHHSSSCCHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCC--CCCH---HHHHHHHHHHHHhccCHHHHHHH
Confidence 8765211 111 111 4789999999999999987742 211 1122 23556777776 9994 3333
Q ss_pred HHHHHc-----cC--CCHHHHHHHHhhhhhhhhhhhhhhhhHHHhhcccCChhhHHHHhhhc-cCCCCcccChHHHHHHH
Q 039167 386 IASLLR-----SK--NTEKEWQNILKSEIWEIEQVEKNLLAPLLLSYNELPSKVKQCFTYCA-VFPKDVILKKDKLIELW 457 (923)
Q Consensus 386 ~~~~l~-----~~--~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~~s-~fp~~~~i~~~~Li~~W 457 (923)
+..+.. +. -+.+.+..++.... ...+.-++..|+++.+..+..++ ++.....+....+.+..
T Consensus 249 l~~a~~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~ 318 (387)
T 2v1u_A 249 LRVAGEIAERRREERVRREHVYSARAEIE----------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERY 318 (387)
T ss_dssp HHHHHHHHHHTTCSCBCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 322221 11 14566655554321 12345567889998888777666 44322345555555443
Q ss_pred Hhc----cC-CCHHHHHHHHHHHHHhccccccc
Q 039167 458 MAQ----ET-KEMEEIGEEYFNVLASRSFFQEF 485 (923)
Q Consensus 458 ~ae----~~-~~~e~~~~~~~~~Lv~r~l~q~~ 485 (923)
..- +. .-.......+++.|...+++...
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 319 KELTSTLGLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 222 11 22245677899999999998754
No 103
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.38 E-value=3e-12 Score=132.54 Aligned_cols=172 Identities=22% Similarity=0.223 Sum_probs=97.1
Q ss_pred cccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccc-hhhhCCCCCcEEecCCCccccccC-ccccCCC
Q 039167 557 CLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLP-ETLCELYNLEHLNVNCCVKLRELP-QGIGRLR 634 (923)
Q Consensus 557 ~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~ 634 (923)
..++++++++. +..+|..+. .+|++|+|++|. +..++ ..++++++|++|+|++|. +..++ ..+..++
T Consensus 15 ~~~~l~~~~~~-------l~~~p~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~ 83 (251)
T 3m19_A 15 GKKEVDCQGKS-------LDSVPSGIP--ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLT 83 (251)
T ss_dssp GGTEEECTTCC-------CSSCCSCCC--TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCT
T ss_pred CCeEEecCCCC-------ccccCCCCC--CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCC
Confidence 34556666433 556665544 466677777666 44443 356666777777777665 44443 3356667
Q ss_pred CCCEEeCCCCcccccCC-cCCCCCCCCCcCCceEecccCCcccccccccCCCCCCCceEeCCCCCCChhhhHHhhcCCCC
Q 039167 635 KLMYLDNECTVSLRYLP-VGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLNLLRDCRIRGLGDVSDVDEARRAELEKKK 713 (923)
Q Consensus 635 ~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~ 713 (923)
+|++|++++| .+..+| ..++.+++|++|++
T Consensus 84 ~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L------------------------------------------------ 114 (251)
T 3m19_A 84 ELGTLGLANN-QLASLPLGVFDHLTQLDKLYL------------------------------------------------ 114 (251)
T ss_dssp TCCEEECTTS-CCCCCCTTTTTTCTTCCEEEC------------------------------------------------
T ss_pred cCCEEECCCC-cccccChhHhcccCCCCEEEc------------------------------------------------
Confidence 7777777666 233333 22333334433332
Q ss_pred CCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCcccccccccccEEeEeCCCCCCCCC-CCC
Q 039167 714 NLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRNCEHLP-PLG 792 (923)
Q Consensus 714 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~ 792 (923)
++|.+... ....+..+++|+.|++++|.... +++..+..+++|+.|+|++|......+ .+.
T Consensus 115 -------~~N~l~~~---------~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 176 (251)
T 3m19_A 115 -------GGNQLKSL---------PSGVFDRLTKLKELRLNTNQLQS--IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176 (251)
T ss_dssp -------CSSCCCCC---------CTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred -------CCCcCCCc---------ChhHhccCCcccEEECcCCcCCc--cCHHHcCcCcCCCEEECCCCcCCccCHHHHh
Confidence 22221100 00112345566666666666555 655567778888888888885544333 377
Q ss_pred CCCCccceeccCCc
Q 039167 793 KLPSLESLYIAGMK 806 (923)
Q Consensus 793 ~L~~L~~L~L~~~~ 806 (923)
.+++|+.|++++|+
T Consensus 177 ~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 177 RLGKLQTITLFGNQ 190 (251)
T ss_dssp TCTTCCEEECCSCC
T ss_pred CCCCCCEEEeeCCc
Confidence 78888888888776
No 104
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.35 E-value=8.3e-13 Score=141.60 Aligned_cols=81 Identities=14% Similarity=-0.026 Sum_probs=49.0
Q ss_pred CCCCcEEeccCCCCccccchhh--hCCCCCcEEecCCCccccccC----ccccCCCCCCEEeCCCCcccccCCcCCCCCC
Q 039167 585 LLHLKYLNLANQMEIERLPETL--CELYNLEHLNVNCCVKLRELP----QGIGRLRKLMYLDNECTVSLRYLPVGIGKLI 658 (923)
Q Consensus 585 l~~L~~L~L~~~~~l~~lp~~i--~~L~~L~~L~L~~~~~l~~lp----~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~ 658 (923)
+.+|++|++++|......|..+ +.+++|++|++++|......| ..+..+++|++|++++|......|..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4568888888887444566666 778888888888876332233 2345677788888877743222234444555
Q ss_pred CCCcCCc
Q 039167 659 RLRRVKE 665 (923)
Q Consensus 659 ~L~~L~~ 665 (923)
+|++|++
T Consensus 170 ~L~~L~L 176 (310)
T 4glp_A 170 ALTSLDL 176 (310)
T ss_dssp TCCEEEC
T ss_pred CCCEEEC
Confidence 5544443
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.35 E-value=3.6e-12 Score=134.96 Aligned_cols=122 Identities=17% Similarity=0.278 Sum_probs=80.7
Q ss_pred ccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchhh
Q 039167 527 IEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPETL 606 (923)
Q Consensus 527 ~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i 606 (923)
...+++|+.|.+++|.+... +. +..+++|++|++++|. +..++. +.++++|++|++++|. +..+|. +
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~--~~-~~~l~~L~~L~L~~n~-------l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l 108 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV--QG-IQYLPNVTKLFLNGNK-------LTDIKP-LANLKNLGWLFLDENK-VKDLSS-L 108 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC--TT-GGGCTTCCEEECCSSC-------CCCCGG-GTTCTTCCEEECCSSC-CCCGGG-G
T ss_pred hhhcCcccEEEccCCCcccC--hh-HhcCCCCCEEEccCCc-------cCCCcc-cccCCCCCEEECCCCc-CCCChh-h
Confidence 45667777777777766543 32 6677778888887665 555555 7777778888887777 666665 7
Q ss_pred hCCCCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCc
Q 039167 607 CELYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKE 665 (923)
Q Consensus 607 ~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~ 665 (923)
+.+++|++|++++|. +..+| .+..+++|++|++++| .+..+ ..++.+++|+.|++
T Consensus 109 ~~l~~L~~L~L~~n~-i~~~~-~l~~l~~L~~L~l~~n-~l~~~-~~l~~l~~L~~L~L 163 (291)
T 1h6t_A 109 KDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSL 163 (291)
T ss_dssp TTCTTCCEEECTTSC-CCCCG-GGGGCTTCCEEECCSS-CCCCC-GGGGGCTTCSEEEC
T ss_pred ccCCCCCEEECCCCc-CCCCh-hhcCCCCCCEEEccCC-cCCcc-hhhccCCCCCEEEc
Confidence 777778888887776 66653 5777777777777777 33333 23444444444433
No 106
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.33 E-value=5.2e-11 Score=131.95 Aligned_cols=289 Identities=12% Similarity=0.043 Sum_probs=177.0
Q ss_pred CCceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccc----cc--cceEEEEEeCCcc-cH
Q 039167 176 ESEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVE----KN--FEKRIWVCVSDPF-DE 248 (923)
Q Consensus 176 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~--F~~~~wv~~s~~~-~~ 248 (923)
+..++||+++++++.+++..... ....+.+.|+|++|+||||||+.+++...-. .. ....+|+++.... +.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 96 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTP 96 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCH
Confidence 36799999999999988754211 2345689999999999999999999842111 11 2356788777666 78
Q ss_pred HHHHHHHHHHHhCCCCC--CcCHHHHHHHHHHHhcCCceEEEecCCCCCChhh-HHH-hHHhhhcCCCCcEEEEEecchH
Q 039167 249 FRIARAIIEALTGCLPN--FVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHK-WEQ-FNNCLKNCLYGSKILITTRKEA 324 (923)
Q Consensus 249 ~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~-~~~-l~~~l~~~~~gs~iivTtR~~~ 324 (923)
..++..++.++.+.... ..........+.+.+..++.+|||||++.-.... .+. +...+... .+..||+||+...
T Consensus 97 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~ 175 (384)
T 2qby_B 97 QAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDIN 175 (384)
T ss_dssp HHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTT
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCc
Confidence 88889998888543221 2334566677778887777799999995432111 222 33333332 5778999998652
Q ss_pred H----HHHh-cc-cceEeCCCCChHHHHHHHHHhhcC-CCCccchhhHHHHHHHHHHhcC---CChH-HHHHHHHH--Hc
Q 039167 325 V----ARIM-GS-TNIISVNVLSGMECWLVFESLAFV-GKSMEERENLEKIGREITRKCK---GLPL-ATKTIASL--LR 391 (923)
Q Consensus 325 v----~~~~-~~-~~~~~l~~L~~~~~~~lf~~~a~~-~~~~~~~~~~~~~~~~i~~~c~---GlPL-ai~~~~~~--l~ 391 (923)
. .... .. ...+.+++++.++..++|...+.. .......+ +..+.+++.++ |.|. |+..+-.+ +.
T Consensus 176 ~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 176 VRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp TTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred hHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 1 1111 11 238999999999999999987431 01111122 23556666776 8876 44433332 22
Q ss_pred c---CCCHHHHHHHHhhhhhhhhhhhhhhhhHHHhhcccCChhhHHHHhhhccCCCCcccChHHHHH--HHHhc--c-CC
Q 039167 392 S---KNTEKEWQNILKSEIWEIEQVEKNLLAPLLLSYNELPSKVKQCFTYCAVFPKDVILKKDKLIE--LWMAQ--E-TK 463 (923)
Q Consensus 392 ~---~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~~s~fp~~~~i~~~~Li~--~W~ae--~-~~ 463 (923)
. .-+.+.+..++.... ...+.-++..|+++.+..+..++. ... ...+.+ .-+++ + ..
T Consensus 253 ~~~~~i~~~~v~~~~~~~~----------~~~~~~~~~~l~~~~~~~l~al~~-~~~----~~~~~~~~~~~~~~~g~~~ 317 (384)
T 2qby_B 253 SGGGIIRKEHVDKAIVDYE----------QERLIEAVKALPFHYKLALRSLIE-SED----VMSAHKMYTDLCNKFKQKP 317 (384)
T ss_dssp TSSSCCCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHT-CCB----HHHHHHHHHHHHHHTTCCC
T ss_pred cCCCccCHHHHHHHHHHHh----------cchHHHHHHcCCHHHHHHHHHHHH-hcc----cChHHHHHHHHHHHcCCCC
Confidence 1 225666666654321 133556778899888888877776 111 012211 11222 1 11
Q ss_pred CHHHHHHHHHHHHHhccccccc
Q 039167 464 EMEEIGEEYFNVLASRSFFQEF 485 (923)
Q Consensus 464 ~~e~~~~~~~~~Lv~r~l~q~~ 485 (923)
........+++.|...+++...
T Consensus 318 ~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 318 LSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHhCCCEEEE
Confidence 2234567889999999998753
No 107
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.33 E-value=1.7e-13 Score=150.43 Aligned_cols=233 Identities=12% Similarity=0.049 Sum_probs=117.9
Q ss_pred CCceEEEeCCCCCCCccc---hHHhhcCC-cccEEeccccCCcccccccccc-cccccCC-----CCCcEEeccCCCCcc
Q 039167 531 RGLRSLLLESTKHSSVIL---PQLFDKLT-CLRALKLEVHNERLPEDFIKEV-PTNIEKL-----LHLKYLNLANQMEIE 600 (923)
Q Consensus 531 ~~Lr~L~l~~~~~~~~~l---~~~~~~~~-~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l-----~~L~~L~L~~~~~l~ 600 (923)
++|+.|++++|.+..... ...+.+++ .|++|+|++|. +... +..+..+ .+|++|+|++|. +.
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-------l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~ 93 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-------LGFKNSDELVQILAAIPANVTSLNLSGNF-LS 93 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-------GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GG
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-------CCHHHHHHHHHHHhccCCCccEEECcCCc-CC
Confidence 447777777776554321 14455666 67777777654 2222 2233332 667777777776 44
Q ss_pred cc-chh----hhCC-CCCcEEecCCCccccccCc-c----ccC-CCCCCEEeCCCCcccc----cCCcCCCCCC-CCCcC
Q 039167 601 RL-PET----LCEL-YNLEHLNVNCCVKLRELPQ-G----IGR-LRKLMYLDNECTVSLR----YLPVGIGKLI-RLRRV 663 (923)
Q Consensus 601 ~l-p~~----i~~L-~~L~~L~L~~~~~l~~lp~-~----i~~-L~~L~~L~l~~~~~l~----~~p~~i~~L~-~L~~L 663 (923)
.. +.. +..+ ++|++|++++|. +...+. . +.. .++|++|++++|.... .++..+..++ +|++|
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 172 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL 172 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEe
Confidence 33 232 3333 667777777766 444332 2 222 2467777777663221 1122222222 44444
Q ss_pred CceEecccCCcccccccccCCCCCCCceEeCCCCCCChhhhHHhhcCCC-CCCCcEEEEEcCCCCCCCccchHHHHhhcC
Q 039167 664 KEFVVGGGYGRACSLGSLKKLNLLRDCRIRGLGDVSDVDEARRAELEKK-KNLFELKLHFDQAGRRENEEDEDERLLEAL 742 (923)
Q Consensus 664 ~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l 742 (923)
++..+.... .....+...+... ++|+.|++++|.++. .....+...+
T Consensus 173 ~Ls~n~l~~---------------------------~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~-----~~~~~l~~~l 220 (362)
T 3goz_A 173 NLRGNNLAS---------------------------KNCAELAKFLASIPASVTSLDLSANLLGL-----KSYAELAYIF 220 (362)
T ss_dssp ECTTSCGGG---------------------------SCHHHHHHHHHTSCTTCCEEECTTSCGGG-----SCHHHHHHHH
T ss_pred eecCCCCch---------------------------hhHHHHHHHHHhCCCCCCEEECCCCCCCh-----hHHHHHHHHH
Confidence 332221111 1112222333444 477777777776432 1112233334
Q ss_pred CC-CCCCCcEEEeeecCCCCCcCc----ccccccccccEEeEeCCCCCC-------CC-CCCCCCCCccceeccCCc
Q 039167 743 GP-PPNLKELWINKYRGKRNVVPK----NWIMSLTNLRFLGLHEWRNCE-------HL-PPLGKLPSLESLYIAGMK 806 (923)
Q Consensus 743 ~~-~~~L~~L~l~~~~~~~~~~~p----~~~~~l~~L~~L~L~~~~~~~-------~l-~~l~~L~~L~~L~L~~~~ 806 (923)
.. +++|+.|++++|.... .++ .++..+++|+.|+|++|.... .+ ..+..+++|+.|++++|.
T Consensus 221 ~~~~~~L~~L~Ls~N~l~~--~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 221 SSIPNHVVSLNLCLNCLHG--PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHSCTTCCEEECCSSCCCC--CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred hcCCCCceEEECcCCCCCc--HHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 33 3577777777776554 212 233466777788877775111 11 125667777777777765
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.33 E-value=1.3e-12 Score=135.93 Aligned_cols=166 Identities=21% Similarity=0.190 Sum_probs=97.3
Q ss_pred CCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchhhhCCCCCcEEecCCCccccccCccccCCC
Q 039167 555 LTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPETLCELYNLEHLNVNCCVKLRELPQGIGRLR 634 (923)
Q Consensus 555 ~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~ 634 (923)
+..+..++++.+. +..++ .+..+.+|++|++++|. +..+| .++.+++|++|++++|. +..+|. +..++
T Consensus 18 l~~l~~l~l~~~~-------i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~ 85 (263)
T 1xeu_A 18 LANAVKQNLGKQS-------VTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLT 85 (263)
T ss_dssp HHHHHHHHHTCSC-------TTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCS
T ss_pred HHHHHHHHhcCCC-------ccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCc-cCCChh-hccCC
Confidence 3344555555333 44444 45566666667666665 66666 46666667777776665 555655 66666
Q ss_pred CCCEEeCCCCcccccCCcCCCCCCCCCcCCceEecccCCcccccccccCCCCCCCceEeCCCCCCChhhhHHhhcCCCCC
Q 039167 635 KLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLNLLRDCRIRGLGDVSDVDEARRAELEKKKN 714 (923)
Q Consensus 635 ~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~ 714 (923)
+|++|++++| .+..+|.... + +
T Consensus 86 ~L~~L~L~~N-~l~~l~~~~~--~-------------------------------------------------------~ 107 (263)
T 1xeu_A 86 KLEELSVNRN-RLKNLNGIPS--A-------------------------------------------------------C 107 (263)
T ss_dssp SCCEEECCSS-CCSCCTTCCC--S-------------------------------------------------------S
T ss_pred CCCEEECCCC-ccCCcCcccc--C-------------------------------------------------------c
Confidence 6777766666 2333322111 2 2
Q ss_pred CCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCcccccccccccEEeEeCCCCCCCCCCCCCC
Q 039167 715 LFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRNCEHLPPLGKL 794 (923)
Q Consensus 715 L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~L 794 (923)
|+.|++++|.+.. +..+..+++|+.|++++|.... + + .+..+++|+.|+|++|.... ++.+..+
T Consensus 108 L~~L~L~~N~l~~-----------~~~l~~l~~L~~L~Ls~N~i~~--~-~-~l~~l~~L~~L~L~~N~i~~-~~~l~~l 171 (263)
T 1xeu_A 108 LSRLFLDNNELRD-----------TDSLIHLKNLEILSIRNNKLKS--I-V-MLGFLSKLEVLDLHGNEITN-TGGLTRL 171 (263)
T ss_dssp CCEEECCSSCCSB-----------SGGGTTCTTCCEEECTTSCCCB--C-G-GGGGCTTCCEEECTTSCCCB-CTTSTTC
T ss_pred ccEEEccCCccCC-----------ChhhcCcccccEEECCCCcCCC--C-h-HHccCCCCCEEECCCCcCcc-hHHhccC
Confidence 3333333333211 1124445666666666666655 4 3 46678888888888885443 3668888
Q ss_pred CCccceeccCCc
Q 039167 795 PSLESLYIAGMK 806 (923)
Q Consensus 795 ~~L~~L~L~~~~ 806 (923)
++|+.|++++|+
T Consensus 172 ~~L~~L~l~~N~ 183 (263)
T 1xeu_A 172 KKVNWIDLTGQK 183 (263)
T ss_dssp CCCCEEEEEEEE
T ss_pred CCCCEEeCCCCc
Confidence 888888888876
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.31 E-value=4e-12 Score=147.85 Aligned_cols=174 Identities=18% Similarity=0.205 Sum_probs=130.6
Q ss_pred cccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchh
Q 039167 526 NIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPET 605 (923)
Q Consensus 526 ~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~ 605 (923)
....+++|+.|.+++|.+... +. +..+++|+.|+|++|. +..+|. +..|++|++|+|++|. +..+| .
T Consensus 38 ~~~~L~~L~~L~l~~n~i~~l--~~-l~~l~~L~~L~Ls~N~-------l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~ 104 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDIKSV--QG-IQYLPNVTKLFLNGNK-------LTDIKP-LTNLKNLGWLFLDENK-IKDLS-S 104 (605)
T ss_dssp CHHHHTTCCCCBCTTCCCCCC--TT-GGGCTTCCEEECTTSC-------CCCCGG-GGGCTTCCEEECCSSC-CCCCT-T
T ss_pred chhcCCCCCEEECcCCCCCCC--hH-HccCCCCCEEEeeCCC-------CCCChh-hccCCCCCEEECcCCC-CCCCh-h
Confidence 356778888889988887653 33 7889999999999765 666665 8889999999999998 88777 5
Q ss_pred hhCCCCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEecccCCcccccccccCCC
Q 039167 606 LCELYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLN 685 (923)
Q Consensus 606 i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~ 685 (923)
++.+++|++|+|++|. +..+| .+..|++|+.|++++| .+..+ ..++.+++|+.|++..+.... +
T Consensus 105 l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N-~l~~l-~~l~~l~~L~~L~Ls~N~l~~--------~---- 168 (605)
T 1m9s_A 105 LKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDNQISD--------I---- 168 (605)
T ss_dssp STTCTTCCEEECTTSC-CCCCG-GGGGCTTCSEEECCSS-CCCCC-GGGGSCTTCSEEECCSSCCCC--------C----
T ss_pred hccCCCCCEEEecCCC-CCCCc-cccCCCccCEEECCCC-ccCCc-hhhcccCCCCEEECcCCcCCC--------c----
Confidence 8899999999999987 77664 5888999999999988 45555 457777777777664332211 0
Q ss_pred CCCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCC
Q 039167 686 LLRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKR 760 (923)
Q Consensus 686 ~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~ 760 (923)
..+..+++|+.|+|+.|.+.. +..+..+++|+.|+|++|....
T Consensus 169 ---------------------~~l~~l~~L~~L~Ls~N~i~~-----------l~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 169 ---------------------VPLAGLTKLQNLYLSKNHISD-----------LRALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp ---------------------GGGTTCTTCCEEECCSSCCCB-----------CGGGTTCTTCSEEECCSEEEEC
T ss_pred ---------------------hhhccCCCCCEEECcCCCCCC-----------ChHHccCCCCCEEEccCCcCcC
Confidence 014456778888888887542 1346778999999999998766
No 110
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.31 E-value=1.1e-10 Score=129.73 Aligned_cols=294 Identities=14% Similarity=0.056 Sum_probs=182.6
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCccccccc-ceEEEEEeCCcccHHHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNF-EKRIWVCVSDPFDEFRIARAI 255 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i 255 (923)
..++||+.+++++..++...........+.+.|+|++|+||||||+.+++. ..... ...+|++.+...+...+...+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 679999999999999886521101112348999999999999999999874 32221 246678877777888899999
Q ss_pred HHHHhCCCCC-CcCHHHHHHHHHHHhc--CCceEEEecCCCCCChhhHHHhHHhhhcCC----CCcEEEEEecchHHHHH
Q 039167 256 IEALTGCLPN-FVEFQSLMQHIQKHVA--GKKLLLVLDDVWNENFHKWEQFNNCLKNCL----YGSKILITTRKEAVARI 328 (923)
Q Consensus 256 ~~~l~~~~~~-~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~----~gs~iivTtR~~~v~~~ 328 (923)
+..++...+. ..........+.+.+. +++.+||||+++..+......+...+.... .+..||+||+.......
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 9888654332 2345556666666554 668899999997765555666665553221 36678888876543322
Q ss_pred hc-------ccceEeCCCCChHHHHHHHHHhhcCC-CCccchhhHHHHHHHHHHhc---------CCChHHHHHHHHHHc
Q 039167 329 MG-------STNIISVNVLSGMECWLVFESLAFVG-KSMEERENLEKIGREITRKC---------KGLPLATKTIASLLR 391 (923)
Q Consensus 329 ~~-------~~~~~~l~~L~~~~~~~lf~~~a~~~-~~~~~~~~~~~~~~~i~~~c---------~GlPLai~~~~~~l~ 391 (923)
+. ....+.+.+++.++..+++...+... ..... -.+....+++.+ +|.|-.+..+.....
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSY---SEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSS---CHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCC---CHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 21 12379999999999999998765320 01111 124567788888 788755444332211
Q ss_pred ------cC--CCHHHHHHHHhhhhhhhhhhhhhhhhHHHhhcccCChhhHHHHhhhccCC---CCcccChHHHHHHHHhc
Q 039167 392 ------SK--NTEKEWQNILKSEIWEIEQVEKNLLAPLLLSYNELPSKVKQCFTYCAVFP---KDVILKKDKLIELWMAQ 460 (923)
Q Consensus 392 ------~~--~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~~s~fp---~~~~i~~~~Li~~W~ae 460 (923)
+. -+.+....+.... ....+.-.+..|+.+.+.++..++.+. .+..+....+...+-.-
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~----------~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~ 321 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEV----------LFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIV 321 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHH----------SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHH----------hhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHH
Confidence 11 1223322222211 011223345678888888888777654 22245666666655432
Q ss_pred ----cC-CCHHHHHHHHHHHHHhccccccc
Q 039167 461 ----ET-KEMEEIGEEYFNVLASRSFFQEF 485 (923)
Q Consensus 461 ----~~-~~~e~~~~~~~~~Lv~r~l~q~~ 485 (923)
+. .-.......++++|...+++...
T Consensus 322 ~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 322 CEEYGERPRVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHHTTCCCCCHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHcCCCCCCHHHHHHHHHHHHhCCCeEEe
Confidence 11 11134466789999999998754
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.29 E-value=5.7e-12 Score=144.79 Aligned_cols=88 Identities=24% Similarity=0.310 Sum_probs=45.1
Q ss_pred cccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchhhhCCCCCcEEecCCCccccccCccccCCCCC
Q 039167 557 CLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPETLCELYNLEHLNVNCCVKLRELPQGIGRLRKL 636 (923)
Q Consensus 557 ~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 636 (923)
+|++|++++|. +..+|..+. ++|++|+|++|. +..+| +.+++|++|++++|. +..+|. +.. +|
T Consensus 60 ~L~~L~Ls~n~-------L~~lp~~l~--~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L 122 (571)
T 3cvr_A 60 QFSELQLNRLN-------LSSLPDNLP--PQITVLEITQNA-LISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SL 122 (571)
T ss_dssp TCSEEECCSSC-------CSCCCSCCC--TTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TC
T ss_pred CccEEEeCCCC-------CCccCHhHc--CCCCEEECcCCC-Ccccc---cccCCCCEEEccCCC-CCCcch-hhc--CC
Confidence 55555555443 444554442 455666665555 55555 345556666665554 444555 433 55
Q ss_pred CEEeCCCCcccccCCcCCCCCCCCCcCCc
Q 039167 637 MYLDNECTVSLRYLPVGIGKLIRLRRVKE 665 (923)
Q Consensus 637 ~~L~l~~~~~l~~~p~~i~~L~~L~~L~~ 665 (923)
++|++++| .+..+|. .+++|+.|++
T Consensus 123 ~~L~Ls~N-~l~~lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 123 KHLDVDNN-QLTMLPE---LPALLEYINA 147 (571)
T ss_dssp CEEECCSS-CCSCCCC---CCTTCCEEEC
T ss_pred CEEECCCC-cCCCCCC---cCccccEEeC
Confidence 56666555 3333444 3444444443
No 112
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.29 E-value=2.1e-11 Score=126.23 Aligned_cols=129 Identities=27% Similarity=0.344 Sum_probs=68.1
Q ss_pred CCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCccccccccccc-ccccCCCCCcEEeccCCCCccccc-hhhhC
Q 039167 531 RGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVP-TNIEKLLHLKYLNLANQMEIERLP-ETLCE 608 (923)
Q Consensus 531 ~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~l~~lp-~~i~~ 608 (923)
++++.|++++|.+.... +..|.++++|++|+|++|. +..++ ..+..+++|++|+|++|. +..+| ..+..
T Consensus 35 ~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 105 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLS-DATFRGLTKLTWLNLDYNQ-------LQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDH 105 (251)
T ss_dssp TTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSC-------CCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTT
T ss_pred CCCCEEEccCCCcCccC-HhHhcCcccCCEEECCCCc-------CCccCHhHhccCCcCCEEECCCCc-ccccChhHhcc
Confidence 35556666665554432 3335556666666666544 33332 234556666666666665 44444 23455
Q ss_pred CCCCcEEecCCCccccccCcc-ccCCCCCCEEeCCCCcccccCCc-CCCCCCCCCcCCceEecc
Q 039167 609 LYNLEHLNVNCCVKLRELPQG-IGRLRKLMYLDNECTVSLRYLPV-GIGKLIRLRRVKEFVVGG 670 (923)
Q Consensus 609 L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~-~i~~L~~L~~L~~~~~~~ 670 (923)
+++|++|+|++|. +..+|.. +..+++|++|++++| .+..+|. .++.+++|++|++..+..
T Consensus 106 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 167 (251)
T 3m19_A 106 LTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQL 167 (251)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcC
Confidence 6666666666654 5455443 355666666666655 3344443 355555666555554443
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.29 E-value=1.5e-11 Score=121.90 Aligned_cols=147 Identities=14% Similarity=0.220 Sum_probs=98.4
Q ss_pred cceEEEEEEecCCCCCccccccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccc-cccccccCC
Q 039167 507 KKILHLTLAIGCGPMPIYDNIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIK-EVPTNIEKL 585 (923)
Q Consensus 507 ~~~~~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~-~lp~~i~~l 585 (923)
..++.+.+..+.... .+.+..+++|++|++++|.+.. ++ .+..+++|++|++++|. +. ..|..++.+
T Consensus 44 ~~L~~L~l~~n~i~~--l~~l~~l~~L~~L~l~~n~~~~--~~-~l~~l~~L~~L~l~~n~-------l~~~~~~~l~~l 111 (197)
T 4ezg_A 44 NSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHATN--YN-PISGLSNLERLRIMGKD-------VTSDKIPNLSGL 111 (197)
T ss_dssp HTCCEEEEESSCCSC--CTTGGGCTTCSEEEEESCCCSC--CG-GGTTCTTCCEEEEECTT-------CBGGGSCCCTTC
T ss_pred CCccEEeccCCCccC--hHHHhcCCCCCEEEccCCCCCc--ch-hhhcCCCCCEEEeECCc-------cCcccChhhcCC
Confidence 345667676665432 2256777788888888775433 22 36777888888887665 33 255667777
Q ss_pred CCCcEEeccCCCCccccchhhhCCCCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCc
Q 039167 586 LHLKYLNLANQMEIERLPETLCELYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKE 665 (923)
Q Consensus 586 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~ 665 (923)
++|++|++++|......|..++.+++|++|++++|..+..+| .+..+++|++|++++| .+..++ .+..+++|+.|++
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~-~l~~l~~L~~L~l 188 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYR-GIEDFPKLNQLYA 188 (197)
T ss_dssp TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCT-TGGGCSSCCEEEE
T ss_pred CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChH-HhccCCCCCEEEe
Confidence 888888888877333466777788888888888876566666 5777888888888777 445555 5666777777665
Q ss_pred eEe
Q 039167 666 FVV 668 (923)
Q Consensus 666 ~~~ 668 (923)
..+
T Consensus 189 ~~N 191 (197)
T 4ezg_A 189 FSQ 191 (197)
T ss_dssp CBC
T ss_pred eCc
Confidence 544
No 114
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.29 E-value=9.3e-13 Score=144.54 Aligned_cols=241 Identities=10% Similarity=0.020 Sum_probs=153.9
Q ss_pred ccceEEEEEEecCCCCCcc----ccccccC-CceEEEeCCCCCCCccchHHhhcC-----CcccEEeccccCCccccccc
Q 039167 506 EKKILHLTLAIGCGPMPIY----DNIEALR-GLRSLLLESTKHSSVILPQLFDKL-----TCLRALKLEVHNERLPEDFI 575 (923)
Q Consensus 506 ~~~~~~l~l~~~~~~~~~~----~~~~~~~-~Lr~L~l~~~~~~~~~l~~~~~~~-----~~Lr~L~L~~~~~~~~~~~~ 575 (923)
...++++.+..+....... ..+..++ +|++|++++|.+.... +..+..+ +.|++|+|++|.. .....
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~n~l--~~~~~ 97 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKN-SDELVQILAAIPANVTSLNLSGNFL--SYKSS 97 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSC-HHHHHHHHHTSCTTCCEEECCSSCG--GGSCH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHH-HHHHHHHHhccCCCccEEECcCCcC--ChHHH
Confidence 4458888888776533223 4566777 8999999999876643 2234443 9999999998861 11111
Q ss_pred ccccccccCC-CCCcEEeccCCCCccccch-h----hhC-CCCCcEEecCCCcccc-----ccCccccCCC-CCCEEeCC
Q 039167 576 KEVPTNIEKL-LHLKYLNLANQMEIERLPE-T----LCE-LYNLEHLNVNCCVKLR-----ELPQGIGRLR-KLMYLDNE 642 (923)
Q Consensus 576 ~~lp~~i~~l-~~L~~L~L~~~~~l~~lp~-~----i~~-L~~L~~L~L~~~~~l~-----~lp~~i~~L~-~L~~L~l~ 642 (923)
..+...+..+ .+|++|+|++|. +...+. . +.. ..+|++|+|++|. +. .++..+..++ +|++|+++
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls 175 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLR 175 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred HHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeec
Confidence 1122235555 899999999999 765553 3 334 3699999999997 55 4556666776 99999999
Q ss_pred CCcccccCCcC----CCCC-CCCCcCCceEecccCCcccccccccCCCCCCCceEeCCCCCCChhhhHHhhcCC-CCCCC
Q 039167 643 CTVSLRYLPVG----IGKL-IRLRRVKEFVVGGGYGRACSLGSLKKLNLLRDCRIRGLGDVSDVDEARRAELEK-KKNLF 716 (923)
Q Consensus 643 ~~~~l~~~p~~----i~~L-~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~-~~~L~ 716 (923)
+|......+.. +..+ ++|++|++..+.... .........+.. .++|+
T Consensus 176 ~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~---------------------------~~~~~l~~~l~~~~~~L~ 228 (362)
T 3goz_A 176 GNNLASKNCAELAKFLASIPASVTSLDLSANLLGL---------------------------KSYAELAYIFSSIPNHVV 228 (362)
T ss_dssp TSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG---------------------------SCHHHHHHHHHHSCTTCC
T ss_pred CCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh---------------------------hHHHHHHHHHhcCCCCce
Confidence 99433322222 2233 466666554332211 001122233333 45899
Q ss_pred cEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcC-------cccccccccccEEeEeCCCCC
Q 039167 717 ELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVP-------KNWIMSLTNLRFLGLHEWRNC 785 (923)
Q Consensus 717 ~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~-------p~~~~~l~~L~~L~L~~~~~~ 785 (923)
.|++++|.++. .....+...+..+++|+.|++++|.... +. +..+..+++|+.|++++|...
T Consensus 229 ~L~Ls~N~l~~-----~~~~~l~~~~~~l~~L~~L~L~~n~l~~--i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 229 SLNLCLNCLHG-----PSLENLKLLKDSLKHLQTVYLDYDIVKN--MSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp EEECCSSCCCC-----CCHHHHHHTTTTTTTCSEEEEEHHHHTT--CCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred EEECcCCCCCc-----HHHHHHHHHHhcCCCccEEEeccCCccc--cCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 99999887653 2223445667788899999999987332 21 234557888999999988643
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.28 E-value=6.8e-12 Score=120.99 Aligned_cols=130 Identities=25% Similarity=0.238 Sum_probs=105.3
Q ss_pred cCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccc-cchhhhC
Q 039167 530 LRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIER-LPETLCE 608 (923)
Q Consensus 530 ~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~-lp~~i~~ 608 (923)
.++|+.|++++|.+....++..+..+++|++|++++|. +..+ ..++.+++|++|++++|. +.. +|..+.+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-------l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~ 93 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-------LISV-SNLPKLPKLKKLELSENR-IFGGLDMLAEK 93 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-------CCCC-SSCCCCSSCCEEEEESCC-CCSCCCHHHHH
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-------CCCh-hhhccCCCCCEEECcCCc-CchHHHHHHhh
Confidence 47789999999887633345557888999999999776 5555 678889999999999998 666 8887888
Q ss_pred CCCCcEEecCCCccccccC--ccccCCCCCCEEeCCCCcccccCCc----CCCCCCCCCcCCceEecc
Q 039167 609 LYNLEHLNVNCCVKLRELP--QGIGRLRKLMYLDNECTVSLRYLPV----GIGKLIRLRRVKEFVVGG 670 (923)
Q Consensus 609 L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p~----~i~~L~~L~~L~~~~~~~ 670 (923)
+++|++|++++|. +..+| ..+..+++|++|++++| .+..+|. .+..+++|+.|++..+..
T Consensus 94 l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 94 LPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred CCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 9999999999987 77776 67889999999999998 5566665 678889999998876654
No 116
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.26 E-value=6.4e-12 Score=118.46 Aligned_cols=127 Identities=22% Similarity=0.265 Sum_probs=102.6
Q ss_pred ccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccc-cchhhh
Q 039167 529 ALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIER-LPETLC 607 (923)
Q Consensus 529 ~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~-lp~~i~ 607 (923)
..++++.|++++|.+....++..+..+++|++|++++|. +..+ ..++.+++|++|++++|. +.. +|..++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-------l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~ 85 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-------LTSI-ANLPKLNKLKKLELSDNR-VSGGLEVLAE 85 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-------CCCC-TTCCCCTTCCEEECCSSC-CCSCTHHHHH
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-------CCCc-hhhhcCCCCCEEECCCCc-ccchHHHHhh
Confidence 347789999999987633345567889999999999776 5555 678889999999999998 666 888888
Q ss_pred CCCCCcEEecCCCccccccC--ccccCCCCCCEEeCCCCcccccCCc----CCCCCCCCCcCCce
Q 039167 608 ELYNLEHLNVNCCVKLRELP--QGIGRLRKLMYLDNECTVSLRYLPV----GIGKLIRLRRVKEF 666 (923)
Q Consensus 608 ~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p~----~i~~L~~L~~L~~~ 666 (923)
.+++|++|++++|. +..+| ..++.+++|++|++++| .+..+|. .++.+++|+.|++.
T Consensus 86 ~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 86 KCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 89999999999997 77765 78899999999999998 5566665 57778888887653
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.26 E-value=9.6e-12 Score=123.41 Aligned_cols=129 Identities=14% Similarity=0.142 Sum_probs=104.2
Q ss_pred ccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCcc-ccchh
Q 039167 527 IEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIE-RLPET 605 (923)
Q Consensus 527 ~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~-~lp~~ 605 (923)
...+++|+.|.+++|.+.. ++ .+..+++|++|++++|. +..++ .+..+++|++|++++|. +. ..|..
T Consensus 40 ~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~n~-------~~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~~ 107 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTD--LT-GIEYAHNIKDLTINNIH-------ATNYN-PISGLSNLERLRIMGKD-VTSDKIPN 107 (197)
T ss_dssp HHHHHTCCEEEEESSCCSC--CT-TGGGCTTCSEEEEESCC-------CSCCG-GGTTCTTCCEEEEECTT-CBGGGSCC
T ss_pred hhhcCCccEEeccCCCccC--hH-HHhcCCCCCEEEccCCC-------CCcch-hhhcCCCCCEEEeECCc-cCcccChh
Confidence 4678899999999998775 34 38899999999999775 44443 68889999999999998 55 47788
Q ss_pred hhCCCCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEe
Q 039167 606 LCELYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVV 668 (923)
Q Consensus 606 i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~ 668 (923)
++.+++|++|++++|......|..++.+++|++|++++|..+..+| .++.+++|+.|++..+
T Consensus 108 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 108 LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD 169 (197)
T ss_dssp CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB
T ss_pred hcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC
Confidence 9999999999999998444577889999999999999996467776 5778888888766544
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.25 E-value=7.4e-12 Score=143.80 Aligned_cols=109 Identities=26% Similarity=0.373 Sum_probs=72.1
Q ss_pred CceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchhhhCCCC
Q 039167 532 GLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPETLCELYN 611 (923)
Q Consensus 532 ~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~ 611 (923)
+++.|++++|.+..+ |..+ +++|++|+|++|. +..+| ..+++|++|+|++|. +..+|. +++ +
T Consensus 60 ~L~~L~Ls~n~L~~l--p~~l--~~~L~~L~Ls~N~-------l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~ 121 (571)
T 3cvr_A 60 QFSELQLNRLNLSSL--PDNL--PPQITVLEITQNA-------LISLP---ELPASLEYLDACDNR-LSTLPE-LPA--S 121 (571)
T ss_dssp TCSEEECCSSCCSCC--CSCC--CTTCSEEECCSSC-------CSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--T
T ss_pred CccEEEeCCCCCCcc--CHhH--cCCCCEEECcCCC-------Ccccc---cccCCCCEEEccCCC-CCCcch-hhc--C
Confidence 677777777776552 3212 3677888887665 55666 446778888888877 777777 555 7
Q ss_pred CcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCce
Q 039167 612 LEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEF 666 (923)
Q Consensus 612 L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~ 666 (923)
|++|++++|. +..+|. .+++|++|++++| .+..+|. .+++|++|++.
T Consensus 122 L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls 168 (571)
T 3cvr_A 122 LKHLDVDNNQ-LTMLPE---LPALLEYINADNN-QLTMLPE---LPTSLEVLSVR 168 (571)
T ss_dssp CCEEECCSSC-CSCCCC---CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECC
T ss_pred CCEEECCCCc-CCCCCC---cCccccEEeCCCC-ccCcCCC---cCCCcCEEECC
Confidence 8888888776 666776 5777888888777 4455554 34555555443
No 119
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.25 E-value=1.1e-10 Score=120.44 Aligned_cols=197 Identities=14% Similarity=0.136 Sum_probs=120.3
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAII 256 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 256 (923)
.+++||+..++.+..++.... ..+.+.|+|++|+||||+|+.+++.......+.. ..... ... ...+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~---~~~~~---~~~-~~~~~ 90 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGV---CDN-CREIE 90 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS---SCCSC---SHH-HHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC---CCCcc---cHH-HHHHh
Confidence 359999999999999986532 3358899999999999999999874221111100 00000 000 00000
Q ss_pred HHHh-----CCCCCCcCHHHHHHHHHHH-----hcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecchH-H
Q 039167 257 EALT-----GCLPNFVEFQSLMQHIQKH-----VAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRKEA-V 325 (923)
Q Consensus 257 ~~l~-----~~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v 325 (923)
.... .........+... .+.+. ..+++.+||+||++..+...++.+...+.....+..+|+||+... +
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHHH-HHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred ccCCcceEEecCcccccHHHHH-HHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 0000 0000001111111 11121 235689999999977666777888887776666788999887643 2
Q ss_pred HH-HhcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHHHHH
Q 039167 326 AR-IMGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTIASLL 390 (923)
Q Consensus 326 ~~-~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l 390 (923)
.. .......+++++++.++..+++...+........ .+....|++.|+|.|..+..+...+
T Consensus 170 ~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 170 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBC----HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11 1233468999999999999999887643222111 2446789999999999988776544
No 120
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.24 E-value=1.3e-10 Score=128.94 Aligned_cols=293 Identities=14% Similarity=0.125 Sum_probs=172.3
Q ss_pred CCceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCccccccc---ceEEEEEeCCcccHHHHH
Q 039167 176 ESEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNF---EKRIWVCVSDPFDEFRIA 252 (923)
Q Consensus 176 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~~~~~~~~~ 252 (923)
+..|+||+++++.+.+++..... ......+.|+|++|+||||||+.+++. ....+ ...+|+.+....+...++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHH
Confidence 46799999999999998864211 234568999999999999999999983 33332 246677766666777777
Q ss_pred HHHHHHHhCCCCC-CcCHHHHHHHHHHHhc--CCceEEEecCCCCCC----hhhHHHhHHhhhc-CCCCcEEEEEecchH
Q 039167 253 RAIIEALTGCLPN-FVEFQSLMQHIQKHVA--GKKLLLVLDDVWNEN----FHKWEQFNNCLKN-CLYGSKILITTRKEA 324 (923)
Q Consensus 253 ~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~----~~~~~~l~~~l~~-~~~gs~iivTtR~~~ 324 (923)
..++..++...+. ..+.......+.+.+. +++.+||||+++... ...+..+...+.. ...+..+|+||+...
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 7877777543222 2234555566666664 458999999995421 2233334333322 233556788887653
Q ss_pred HHHHh-----cc--cceEeCCCCChHHHHHHHHHhhcCC-CCccchhhHHHHHHHHHHhcC---CChHHHHHHHH-HH--
Q 039167 325 VARIM-----GS--TNIISVNVLSGMECWLVFESLAFVG-KSMEERENLEKIGREITRKCK---GLPLATKTIAS-LL-- 390 (923)
Q Consensus 325 v~~~~-----~~--~~~~~l~~L~~~~~~~lf~~~a~~~-~~~~~~~~~~~~~~~i~~~c~---GlPLai~~~~~-~l-- 390 (923)
....+ .. ...+.+++++.++..+++...+... ...... .+..+.+++.++ |.|..+..+.. ..
T Consensus 175 ~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~ 251 (386)
T 2qby_A 175 FVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGEI 251 (386)
T ss_dssp GGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 22211 11 1489999999999999998764210 111111 234556666666 99884433322 21
Q ss_pred c---c--CCCHHHHHHHHhhhhhhhhhhhhhhhhHHHhhcccCChhhHHHHhhhccCCC-C-cccChHHHHHHHH--hc-
Q 039167 391 R---S--KNTEKEWQNILKSEIWEIEQVEKNLLAPLLLSYNELPSKVKQCFTYCAVFPK-D-VILKKDKLIELWM--AQ- 460 (923)
Q Consensus 391 ~---~--~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~~s~fp~-~-~~i~~~~Li~~W~--ae- 460 (923)
. + .-+.+.+..++... ....+.-++..+|...+..+..++.+.+ + ..+....+.+... ++
T Consensus 252 a~~~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~ 321 (386)
T 2qby_A 252 AERMKDTKVKEEYVYMAKEEI----------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKK 321 (386)
T ss_dssp HHHTTCSSCCHHHHHHHHHHH----------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHH
T ss_pred HHhcCCCccCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHh
Confidence 1 1 11445555444321 1234555677889888888777774322 2 1233444433322 12
Q ss_pred -cC-CCHHHHHHHHHHHHHhccccccc
Q 039167 461 -ET-KEMEEIGEEYFNVLASRSFFQEF 485 (923)
Q Consensus 461 -~~-~~~e~~~~~~~~~Lv~r~l~q~~ 485 (923)
+. .-.......+++.|...+++...
T Consensus 322 ~g~~~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 322 LGVEAVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HTCCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred cCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 11 11123456788999999998643
No 121
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.22 E-value=2.5e-11 Score=117.95 Aligned_cols=133 Identities=23% Similarity=0.164 Sum_probs=108.6
Q ss_pred ccccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccch
Q 039167 525 DNIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPE 604 (923)
Q Consensus 525 ~~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~ 604 (923)
..+..+.+|+.|++++|.+..+ +......++|++|++++|. +..+ ..++.+++|++|+|++|. +..+|.
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i--~~~~~~~~~L~~L~Ls~N~-------l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~ 81 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNE-------IRKL-DGFPLLRRLKTLLVNNNR-ICRIGE 81 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSC--CCGGGGTTCCSEEECCSSC-------CCEE-CCCCCCSSCCEEECCSSC-CCEECS
T ss_pred HhcCCcCCceEEEeeCCCCchh--HHhhhcCCCCCEEECCCCC-------CCcc-cccccCCCCCEEECCCCc-ccccCc
Confidence 3456788999999999987753 4433344599999999876 5555 578899999999999998 888886
Q ss_pred hh-hCCCCCcEEecCCCccccccCc--cccCCCCCCEEeCCCCcccccCCcC----CCCCCCCCcCCceEecc
Q 039167 605 TL-CELYNLEHLNVNCCVKLRELPQ--GIGRLRKLMYLDNECTVSLRYLPVG----IGKLIRLRRVKEFVVGG 670 (923)
Q Consensus 605 ~i-~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~~----i~~L~~L~~L~~~~~~~ 670 (923)
.+ +.+++|++|++++|. +..+|. .+..+++|++|++++| .+..+|.. ++.+++|+.|++..+..
T Consensus 82 ~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 82 GLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred chhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 55 899999999999997 788887 7899999999999999 55677775 78888999988876543
No 122
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.21 E-value=4.5e-11 Score=121.55 Aligned_cols=128 Identities=27% Similarity=0.438 Sum_probs=104.9
Q ss_pred CCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCccccccccccccc-ccCCCCCcEEeccCCCCccccchh-hhC
Q 039167 531 RGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTN-IEKLLHLKYLNLANQMEIERLPET-LCE 608 (923)
Q Consensus 531 ~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~-i~~ 608 (923)
++|+.|++++|.+.... +..|..+++|++|+|++|. +..+|.. +..+++|++|+|++|. +..+|.. +..
T Consensus 40 ~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~N~-------l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~ 110 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLE-PGVFDSLINLKELYLGSNQ-------LGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDR 110 (229)
T ss_dssp TTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred CCCCEEEcCCCccCccC-HHHhhCccCCcEEECCCCC-------CCCcChhhcccCCCcCEEECCCCc-CCccChhHhCc
Confidence 78999999999887653 5568889999999999776 6777644 5889999999999998 8877754 688
Q ss_pred CCCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCc-CCCCCCCCCcCCceEec
Q 039167 609 LYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPV-GIGKLIRLRRVKEFVVG 669 (923)
Q Consensus 609 L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~-~i~~L~~L~~L~~~~~~ 669 (923)
+++|++|+|++|. +..+|..+..+++|++|++++| .+..+|. .+..+++|+.|++..+.
T Consensus 111 l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 111 LVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred chhhCeEeccCCc-ccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence 9999999999987 8899999999999999999998 5566664 47778888877765544
No 123
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.20 E-value=1.3e-10 Score=117.34 Aligned_cols=66 Identities=23% Similarity=0.371 Sum_probs=42.8
Q ss_pred cccccccccCCCCCcEEeccCCCCccccch-hhhCCCCCcEEecCCCcccccc-CccccCCCCCCEEeCCCC
Q 039167 575 IKEVPTNIEKLLHLKYLNLANQMEIERLPE-TLCELYNLEHLNVNCCVKLREL-PQGIGRLRKLMYLDNECT 644 (923)
Q Consensus 575 ~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~ 644 (923)
+..+|..+. .+|++|+|++|. +..+|. .+..+++|++|+|++|. +..+ |..+..+++|++|++++|
T Consensus 23 l~~iP~~l~--~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 23 LTEIPTNLP--ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp CSSCCSSCC--TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSS
T ss_pred cCcCCCccC--cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCC
Confidence 556665543 567777777776 665554 56667777777777766 4443 556677777777777766
No 124
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.20 E-value=9e-11 Score=117.56 Aligned_cols=127 Identities=29% Similarity=0.417 Sum_probs=71.8
Q ss_pred CCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCccccccccccccc-ccCCCCCcEEeccCCCCccccchh-hhC
Q 039167 531 RGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTN-IEKLLHLKYLNLANQMEIERLPET-LCE 608 (923)
Q Consensus 531 ~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~-i~~ 608 (923)
++++.|++++|.+... .+..|..+++|++|++++|. +..+|.. +..+++|++|+|++|. +..+|.. ++.
T Consensus 28 ~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~ 98 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNK-------LQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDK 98 (208)
T ss_dssp TTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred CCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCc-------cCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcC
Confidence 4566666666665442 23335566666666666544 4444433 4566666666666665 5555543 456
Q ss_pred CCCCcEEecCCCccccccCcc-ccCCCCCCEEeCCCCcccccCCcC-CCCCCCCCcCCceEe
Q 039167 609 LYNLEHLNVNCCVKLRELPQG-IGRLRKLMYLDNECTVSLRYLPVG-IGKLIRLRRVKEFVV 668 (923)
Q Consensus 609 L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~ 668 (923)
+++|++|++++|. +..+|.. +..+++|++|++++| .+..+|.. +..+++|+.|++..+
T Consensus 99 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 99 LTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSC
T ss_pred ccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCC
Confidence 6666666666665 5555443 456666666666666 33444433 455666666655443
No 125
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.19 E-value=9.5e-11 Score=121.87 Aligned_cols=146 Identities=19% Similarity=0.178 Sum_probs=113.0
Q ss_pred cceEEEEEEecCCCCCccccccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCC
Q 039167 507 KKILHLTLAIGCGPMPIYDNIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLL 586 (923)
Q Consensus 507 ~~~~~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~ 586 (923)
..++.+.+..+.... ...+..+++|+.|++++|.+... +. +..+++|++|++++|. +..+|.... .
T Consensus 41 ~~L~~L~l~~n~i~~--l~~l~~l~~L~~L~L~~N~i~~~--~~-l~~l~~L~~L~L~~N~-------l~~l~~~~~--~ 106 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQS--LAGMQFFTNLKELHLSHNQISDL--SP-LKDLTKLEELSVNRNR-------LKNLNGIPS--A 106 (263)
T ss_dssp TTCSEEECTTSCCCC--CTTGGGCTTCCEEECCSSCCCCC--GG-GTTCSSCCEEECCSSC-------CSCCTTCCC--S
T ss_pred CcCcEEECcCCCccc--chHHhhCCCCCEEECCCCccCCC--hh-hccCCCCCEEECCCCc-------cCCcCcccc--C
Confidence 456677776665432 23677889999999999987764 33 8889999999999776 666664333 8
Q ss_pred CCcEEeccCCCCccccchhhhCCCCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCce
Q 039167 587 HLKYLNLANQMEIERLPETLCELYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEF 666 (923)
Q Consensus 587 ~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~ 666 (923)
+|++|++++|. +..+|. ++.+++|++|++++|. +..+| .+..+++|++|++++| .+..+ ..+..+++|+.|++.
T Consensus 107 ~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N-~i~~~-~~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 107 CLSRLFLDNNE-LRDTDS-LIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGN-EITNT-GGLTRLKKVNWIDLT 180 (263)
T ss_dssp SCCEEECCSSC-CSBSGG-GTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTS-CCCBC-TTSTTCCCCCEEEEE
T ss_pred cccEEEccCCc-cCCChh-hcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCC-cCcch-HHhccCCCCCEEeCC
Confidence 89999999998 888774 8899999999999987 77776 6888999999999988 45555 567888888888887
Q ss_pred EecccC
Q 039167 667 VVGGGY 672 (923)
Q Consensus 667 ~~~~~~ 672 (923)
.+....
T Consensus 181 ~N~~~~ 186 (263)
T 1xeu_A 181 GQKCVN 186 (263)
T ss_dssp EEEEEC
T ss_pred CCcccC
Confidence 776544
No 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.19 E-value=6e-11 Score=119.74 Aligned_cols=131 Identities=15% Similarity=0.134 Sum_probs=101.5
Q ss_pred CCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccc-cccCCCCCcEEeccCCCCccccch-hhhC
Q 039167 531 RGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPT-NIEKLLHLKYLNLANQMEIERLPE-TLCE 608 (923)
Q Consensus 531 ~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~-~i~~ 608 (923)
..++.|++++|.+.....+..|..+++|++|+|++|. +..++. .+..+.+|++|+|++|. +..+|. .++.
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-------i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~ 103 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-------ITDIEEGAFEGASGVNEILLTSNR-LENVQHKMFKG 103 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-------CCEECTTTTTTCTTCCEEECCSSC-CCCCCGGGGTT
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-------CCEECHHHhCCCCCCCEEECCCCc-cCccCHhHhcC
Confidence 4568899999887765444557889999999999776 666654 68889999999999998 676654 5888
Q ss_pred CCCCcEEecCCCcccccc-CccccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEecc
Q 039167 609 LYNLEHLNVNCCVKLREL-PQGIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVGG 670 (923)
Q Consensus 609 L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~ 670 (923)
+++|++|+|++|. +..+ |..+..+++|++|++++|......|..+..+++|++|++..+..
T Consensus 104 l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 104 LESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 9999999999987 5555 67788999999999998844333477788888888887665543
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.16 E-value=5.2e-11 Score=114.77 Aligned_cols=135 Identities=25% Similarity=0.219 Sum_probs=111.6
Q ss_pred ccceEEEEEEecCCC-CCccccccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCccccccccc-cccccc
Q 039167 506 EKKILHLTLAIGCGP-MPIYDNIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKE-VPTNIE 583 (923)
Q Consensus 506 ~~~~~~l~l~~~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~-lp~~i~ 583 (923)
...++.+.+..+... ...+..+..+++|+.|++++|.+... ..+..+++|++|++++|. +.. +|..+.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~-------l~~~~~~~~~ 92 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENR-------IFGGLDMLAE 92 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCC-------CCSCCCHHHH
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCc-------CchHHHHHHh
Confidence 456788888877653 23445568899999999999997764 448899999999999876 555 777777
Q ss_pred CCCCCcEEeccCCCCccccc--hhhhCCCCCcEEecCCCccccccCc----cccCCCCCCEEeCCCCcccccCCcC
Q 039167 584 KLLHLKYLNLANQMEIERLP--ETLCELYNLEHLNVNCCVKLRELPQ----GIGRLRKLMYLDNECTVSLRYLPVG 653 (923)
Q Consensus 584 ~l~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~----~i~~L~~L~~L~l~~~~~l~~~p~~ 653 (923)
.+++|++|++++|. +..+| ..++.+++|++|++++|. +..+|. .+..+++|++|++++| ....+|..
T Consensus 93 ~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~ 165 (168)
T 2ell_A 93 KLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPDS 165 (168)
T ss_dssp HCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCSS
T ss_pred hCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC-Chhhcccc
Confidence 89999999999998 88877 789999999999999997 888876 7899999999999998 45666653
No 128
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.16 E-value=1.1e-09 Score=110.99 Aligned_cols=186 Identities=11% Similarity=0.012 Sum_probs=118.4
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccc-eEEEEEeCCcccHHHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFE-KRIWVCVSDPFDEFRIARAI 255 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i 255 (923)
..++|+++.++.+.+++... ....+.|+|++|+|||++|+.+++... ...+. ..+.+..+.......+...+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKI 89 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHHH
Confidence 46899999999999998643 233489999999999999999987321 11222 23344444333322222111
Q ss_pred HHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecchHH-HH-Hhcccc
Q 039167 256 IEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRKEAV-AR-IMGSTN 333 (923)
Q Consensus 256 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v-~~-~~~~~~ 333 (923)
........ ...+++.+||+||++.......+.+...+.....+.++|+||+.... .. ......
T Consensus 90 -~~~~~~~~--------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 90 -KEFARTAP--------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (226)
T ss_dssp -HHHHTSCC--------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred -HHHhcccC--------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc
Confidence 11111000 01257889999999776666677777777766667889998886431 11 112345
Q ss_pred eEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHHH
Q 039167 334 IISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTIAS 388 (923)
Q Consensus 334 ~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 388 (923)
.+++.+++.++..+++...+...+.... .+....+++.++|.|..+..+..
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGVKIT----EDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 8999999999999999877632121111 23467788999999986655443
No 129
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.16 E-value=9.3e-11 Score=118.36 Aligned_cols=128 Identities=21% Similarity=0.268 Sum_probs=99.5
Q ss_pred CCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccc-cccccCCCCCcEEeccCCCCccccchh-hhC
Q 039167 531 RGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEV-PTNIEKLLHLKYLNLANQMEIERLPET-LCE 608 (923)
Q Consensus 531 ~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~-i~~ 608 (923)
++++.|++++|.+..+. +..|..+++|++|+|++|. +..+ |..+.++++|++|+|++|. +..+|.. +..
T Consensus 32 ~~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~-------i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~ 102 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQ-------ISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEG 102 (220)
T ss_dssp TTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSSC-------CCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTT
T ss_pred cCCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCCc-------CCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHccC
Confidence 57889999998876543 4457888999999999776 5555 6778889999999999998 8888865 578
Q ss_pred CCCCcEEecCCCcccccc-CccccCCCCCCEEeCCCCcccccCCc-CCCCCCCCCcCCceEec
Q 039167 609 LYNLEHLNVNCCVKLREL-PQGIGRLRKLMYLDNECTVSLRYLPV-GIGKLIRLRRVKEFVVG 669 (923)
Q Consensus 609 L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~-~i~~L~~L~~L~~~~~~ 669 (923)
+++|++|+|++|. +..+ |..+..+++|++|++++| .+..+|. .+..+++|++|++..+.
T Consensus 103 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 103 LFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCC
Confidence 9999999999987 6555 566888999999999988 4555554 47778888877665443
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.13 E-value=4.7e-11 Score=142.58 Aligned_cols=111 Identities=24% Similarity=0.206 Sum_probs=58.6
Q ss_pred hHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchhhhCCCCCcEEecCCCccccccCc
Q 039167 549 PQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPETLCELYNLEHLNVNCCVKLRELPQ 628 (923)
Q Consensus 549 ~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~ 628 (923)
+..+..++.|++|+|++|. +..+|..+.++.+|++|+|++|. +..+|..+++|++|++|+|++|. +..+|.
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~-------l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~ 287 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQ-------IFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLPA 287 (727)
T ss_dssp -----CCCCCCEEECTTSC-------CSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCCS
T ss_pred hhhhccCCCCcEEECCCCC-------CCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CCccCh
Confidence 3345555555555555443 44555555555555555555555 55555555555555555555554 445555
Q ss_pred cccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEec
Q 039167 629 GIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVG 669 (923)
Q Consensus 629 ~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~ 669 (923)
.++.|++|++|+|++| .+..+|..+++|++|++|++..+.
T Consensus 288 ~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 288 ELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSC
T ss_pred hhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCc
Confidence 5555555555555555 344555555555555555554443
No 131
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.13 E-value=3.3e-10 Score=115.18 Aligned_cols=130 Identities=24% Similarity=0.291 Sum_probs=111.0
Q ss_pred ccceEEEEEEecCCCCCccccccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCccccccccccccc-ccC
Q 039167 506 EKKILHLTLAIGCGPMPIYDNIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTN-IEK 584 (923)
Q Consensus 506 ~~~~~~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~-i~~ 584 (923)
...++.+.+..+......+..+..+++|+.|++++|.+..+. +..|..+++|++|+|++|. +..+|.. +..
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~-------l~~l~~~~~~~ 110 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTNQ-------LTVLPSAVFDR 110 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-------CCCCCTTTTTT
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCCc-------CCccChhHhCc
Confidence 467888988888775545667889999999999999986643 4557899999999999876 6677654 688
Q ss_pred CCCCcEEeccCCCCccccchhhhCCCCCcEEecCCCccccccCc-cccCCCCCCEEeCCCCc
Q 039167 585 LLHLKYLNLANQMEIERLPETLCELYNLEHLNVNCCVKLRELPQ-GIGRLRKLMYLDNECTV 645 (923)
Q Consensus 585 l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 645 (923)
+.+|++|+|++|. +..+|..+..+++|++|+|++|. +..+|. .+..+++|++|++++|.
T Consensus 111 l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 111 LVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred chhhCeEeccCCc-ccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCC
Confidence 9999999999999 99999999999999999999997 778775 48889999999999984
No 132
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.09 E-value=3.9e-10 Score=112.86 Aligned_cols=127 Identities=27% Similarity=0.380 Sum_probs=64.4
Q ss_pred ceEEEEEEecCCCCCccccccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCccccccccccccc-ccCCC
Q 039167 508 KILHLTLAIGCGPMPIYDNIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTN-IEKLL 586 (923)
Q Consensus 508 ~~~~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~-i~~l~ 586 (923)
.++.+.+..+.........+..+++|++|++++|.+..+ .+..|..+++|++|++++|. +..+|.. +..++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~-------l~~~~~~~~~~l~ 100 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQ-------LQSLPNGVFDKLT 100 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-------CCCCCTTTTTTCT
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCc-------CCccCHhHhcCcc
Confidence 445555555444222222344555566666655554432 23334555566666665443 3344332 35555
Q ss_pred CCcEEeccCCCCccccchh-hhCCCCCcEEecCCCccccccCcc-ccCCCCCCEEeCCCC
Q 039167 587 HLKYLNLANQMEIERLPET-LCELYNLEHLNVNCCVKLRELPQG-IGRLRKLMYLDNECT 644 (923)
Q Consensus 587 ~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~ 644 (923)
+|++|++++|. +..+|.. +.++++|++|++++|. +..+|.. +..+++|++|++++|
T Consensus 101 ~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 101 QLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCC
Confidence 66666665555 4444433 4555566666665554 4444433 455556666666555
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.08 E-value=2.3e-10 Score=132.20 Aligned_cols=118 Identities=19% Similarity=0.226 Sum_probs=96.8
Q ss_pred CceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchhhhCCCC
Q 039167 532 GLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPETLCELYN 611 (923)
Q Consensus 532 ~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~ 611 (923)
.|+.|++++|.+.. +|. +..+++|++|+|++|. +..+|..+++|++|++|+|++|. ++.+| .++.+++
T Consensus 442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~-------l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~ 509 (567)
T 1dce_A 442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNR-------LRALPPALAALRCLEVLQASDNA-LENVD-GVANLPR 509 (567)
T ss_dssp TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSC-------CCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSS
T ss_pred CceEEEecCCCCCC--CcC-ccccccCcEeecCccc-------ccccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCC
Confidence 47889999988776 355 8889999999999776 77889999999999999999998 88888 7999999
Q ss_pred CcEEecCCCcccccc--CccccCCCCCCEEeCCCCcccccCCcCCCC----CCCCCcC
Q 039167 612 LEHLNVNCCVKLREL--PQGIGRLRKLMYLDNECTVSLRYLPVGIGK----LIRLRRV 663 (923)
Q Consensus 612 L~~L~L~~~~~l~~l--p~~i~~L~~L~~L~l~~~~~l~~~p~~i~~----L~~L~~L 663 (923)
|++|+|++|. +..+ |..++.|++|++|++++| .+..+|+.+.. +++|+.|
T Consensus 510 L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 510 LQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp CCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEE
T ss_pred CcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCcc
Confidence 9999999987 7766 888999999999999998 55666655433 4555554
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.08 E-value=1.2e-10 Score=109.65 Aligned_cols=125 Identities=25% Similarity=0.274 Sum_probs=103.7
Q ss_pred ccceEEEEEEecCCC-CCccccccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCccccccccc-cccccc
Q 039167 506 EKKILHLTLAIGCGP-MPIYDNIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKE-VPTNIE 583 (923)
Q Consensus 506 ~~~~~~l~l~~~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~-lp~~i~ 583 (923)
...++++.+..+... ...+..+..+++|+.|++++|.+... ..+..+++|++|++++|. +.. +|..++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~-------i~~~~~~~~~ 85 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNR-------VSGGLEVLAE 85 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSC-------CCSCTHHHHH
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCc-------ccchHHHHhh
Confidence 356777777777653 23455668899999999999987764 458899999999999876 555 777778
Q ss_pred CCCCCcEEeccCCCCccccc--hhhhCCCCCcEEecCCCccccccCc----cccCCCCCCEEeCC
Q 039167 584 KLLHLKYLNLANQMEIERLP--ETLCELYNLEHLNVNCCVKLRELPQ----GIGRLRKLMYLDNE 642 (923)
Q Consensus 584 ~l~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~----~i~~L~~L~~L~l~ 642 (923)
.+++|++|++++|. +..+| ..++.+++|++|++++|. +..+|. .+..+++|++|+++
T Consensus 86 ~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 86 KCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 89999999999998 88765 789999999999999997 777776 68899999999985
No 135
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.08 E-value=1.9e-10 Score=125.85 Aligned_cols=59 Identities=22% Similarity=0.230 Sum_probs=29.7
Q ss_pred CCCCCcEEeccCCCCccccc-hhhhCCCCCcEEecCCCccccccCc-cccCCCCCCEEeCCCC
Q 039167 584 KLLHLKYLNLANQMEIERLP-ETLCELYNLEHLNVNCCVKLRELPQ-GIGRLRKLMYLDNECT 644 (923)
Q Consensus 584 ~l~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~ 644 (923)
.+.+|++|+|++|. +..+| ..+.++++|++|+|++|. +..+|. .+..+++|++|++++|
T Consensus 62 ~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N 122 (361)
T 2xot_A 62 RLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNN 122 (361)
T ss_dssp CCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred cccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCC
Confidence 45555555555555 44443 235555555555555554 444433 2445555555555554
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.05 E-value=4.2e-11 Score=142.96 Aligned_cols=120 Identities=21% Similarity=0.239 Sum_probs=100.9
Q ss_pred cccccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccc
Q 039167 524 YDNIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLP 603 (923)
Q Consensus 524 ~~~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp 603 (923)
...+..+..|+.|++++|.+.. ++..+.++++|++|+|++|. +..+|..|++|.+|++|+|++|. +..+|
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~-------l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp 286 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNS-------LTELPAEIKNLSNLRVLDLSHNR-LTSLP 286 (727)
T ss_dssp -----CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSC-------CSCCCGGGGGGTTCCEEECTTSC-CSSCC
T ss_pred hhhhccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCc-------CcccChhhhCCCCCCEEeCcCCc-CCccC
Confidence 4557788999999999998764 34446689999999999876 67899999999999999999999 88999
Q ss_pred hhhhCCCCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCCcCC
Q 039167 604 ETLCELYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLPVGI 654 (923)
Q Consensus 604 ~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i 654 (923)
..+++|++|++|+|++|. +..+|.+|+.|++|++|+|++|.....+|..+
T Consensus 287 ~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp SSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred hhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 999999999999999997 88999999999999999999996544555444
No 137
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.04 E-value=6.8e-10 Score=111.99 Aligned_cols=123 Identities=14% Similarity=0.111 Sum_probs=95.9
Q ss_pred eEEEeCCCCCCCccchHHhhcCCcccEEeccccCCccccccccccc--ccccCCCCCcEEeccCCCCccccch-hhhCCC
Q 039167 534 RSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVP--TNIEKLLHLKYLNLANQMEIERLPE-TLCELY 610 (923)
Q Consensus 534 r~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp--~~i~~l~~L~~L~L~~~~~l~~lp~-~i~~L~ 610 (923)
++++++++.+..+ |..+ ...+++|+|++|. +..++ ..+..+++|++|+|++|. +..+|. .++.++
T Consensus 14 ~~l~~s~n~l~~i--P~~~--~~~~~~L~L~~N~-------l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~ 81 (220)
T 2v70_A 14 TTVDCSNQKLNKI--PEHI--PQYTAELRLNNNE-------FTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGAS 81 (220)
T ss_dssp TEEECCSSCCSSC--CSCC--CTTCSEEECCSSC-------CCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCT
T ss_pred CEeEeCCCCcccC--ccCC--CCCCCEEEcCCCc-------CCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCC
Confidence 5788888876653 3222 3467899999776 66663 347899999999999998 877765 799999
Q ss_pred CCcEEecCCCccccccCc-cccCCCCCCEEeCCCCcccccCCcCCCCCCCCCcCCceEec
Q 039167 611 NLEHLNVNCCVKLRELPQ-GIGRLRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEFVVG 669 (923)
Q Consensus 611 ~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~ 669 (923)
+|++|+|++|. +..+|. .+..+++|++|++++|......|..++.+++|++|++..+.
T Consensus 82 ~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 140 (220)
T 2v70_A 82 GVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ 140 (220)
T ss_dssp TCCEEECCSSC-CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC
T ss_pred CCCEEECCCCc-cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc
Confidence 99999999998 676665 48899999999999995444446778888888888765443
No 138
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.99 E-value=5e-09 Score=112.82 Aligned_cols=186 Identities=15% Similarity=0.127 Sum_probs=117.7
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccc-eEEEEEeCCcccHHHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFE-KRIWVCVSDPFDEFRIARAI 255 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i 255 (923)
.+++|++..++.+..++... ....+.|+|++|+||||+|+.+++... ...+. ..++++.++..... ..+.+
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~-~i~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG------NMPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGID-VVRNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC------CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHH-HHHTH
T ss_pred HHHHCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChH-HHHHH
Confidence 46899999999999998643 223389999999999999999987411 11121 23344433322221 12222
Q ss_pred HHHHhCCCCCCcCHHHHHHHHHHHh-cCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecchH-HHHH-hccc
Q 039167 256 IEALTGCLPNFVEFQSLMQHIQKHV-AGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRKEA-VARI-MGST 332 (923)
Q Consensus 256 ~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~-~~~~ 332 (923)
++.+.... ..+ .+++.+||+||++......++.+...+.....++++|+||+... +... ....
T Consensus 93 ~~~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~ 158 (323)
T 1sxj_B 93 IKHFAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158 (323)
T ss_dssp HHHHHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc
Confidence 22221000 001 45689999999977666667778777776666788888887642 1111 2334
Q ss_pred ceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHH-HHHHHH
Q 039167 333 NIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLA-TKTIAS 388 (923)
Q Consensus 333 ~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLa-i~~~~~ 388 (923)
..+++.+++.++..+++...+...+.... .+....|++.++|.|.. +..+..
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDVKYT----NDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 58999999999999999876532111111 23467889999999954 444433
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.99 E-value=4e-10 Score=130.20 Aligned_cols=103 Identities=22% Similarity=0.197 Sum_probs=90.3
Q ss_pred cccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchhhhCCCCCcEEecCCCccccccCccccCCCCC
Q 039167 557 CLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPETLCELYNLEHLNVNCCVKLRELPQGIGRLRKL 636 (923)
Q Consensus 557 ~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 636 (923)
.|++|+|++|. +..+|. ++.+++|++|+|++|. +..+|..++++++|++|+|++|. ++.+| .++.|++|
T Consensus 442 ~L~~L~Ls~n~-------l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L 510 (567)
T 1dce_A 442 DVRVLHLAHKD-------LTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRL 510 (567)
T ss_dssp TCSEEECTTSC-------CSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSC
T ss_pred CceEEEecCCC-------CCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCC
Confidence 58999999776 777887 9999999999999998 88999999999999999999997 87888 89999999
Q ss_pred CEEeCCCCcccccC--CcCCCCCCCCCcCCceEeccc
Q 039167 637 MYLDNECTVSLRYL--PVGIGKLIRLRRVKEFVVGGG 671 (923)
Q Consensus 637 ~~L~l~~~~~l~~~--p~~i~~L~~L~~L~~~~~~~~ 671 (923)
++|++++| .+..+ |..++.+++|++|++..+...
T Consensus 511 ~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 511 QELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp CEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred cEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 99999998 55666 888999999999988766544
No 140
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.98 E-value=3.8e-10 Score=123.49 Aligned_cols=130 Identities=19% Similarity=0.187 Sum_probs=87.4
Q ss_pred CCceEEEeCCCCCCCccchHHhh-cCCcccEEeccccCCccccccccccc-ccccCCCCCcEEeccCCCCccccch-hhh
Q 039167 531 RGLRSLLLESTKHSSVILPQLFD-KLTCLRALKLEVHNERLPEDFIKEVP-TNIEKLLHLKYLNLANQMEIERLPE-TLC 607 (923)
Q Consensus 531 ~~Lr~L~l~~~~~~~~~l~~~~~-~~~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~-~i~ 607 (923)
..++.|++++|.+.... +..|. .+++|++|+|++|. +..++ ..+.++++|++|+|++|. +..+|. .+.
T Consensus 39 ~~l~~L~Ls~N~l~~l~-~~~~~~~l~~L~~L~L~~N~-------i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~ 109 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLR-AEWTPTRLTNLHSLLLSHNH-------LNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFS 109 (361)
T ss_dssp TTCSEEECCSSCCCEEC-TTSSSSCCTTCCEEECCSSC-------CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTT
T ss_pred CCCCEEECCCCCCCccC-hhhhhhcccccCEEECCCCc-------CCccChhhccCCCCCCEEECCCCc-CCcCCHHHhC
Confidence 34677888877765543 33354 77788888887665 55555 357777888888888877 666654 467
Q ss_pred CCCCCcEEecCCCcccccc-CccccCCCCCCEEeCCCCcccccCCcCC----CCCCCCCcCCceEeccc
Q 039167 608 ELYNLEHLNVNCCVKLREL-PQGIGRLRKLMYLDNECTVSLRYLPVGI----GKLIRLRRVKEFVVGGG 671 (923)
Q Consensus 608 ~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~i----~~L~~L~~L~~~~~~~~ 671 (923)
.+++|++|+|++|. +..+ |..+..+++|++|++++| .+..+|..+ +.+++|+.|++..+...
T Consensus 110 ~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 110 DLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp TCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 78888888888876 5444 556777888888888777 556666554 45777777766655443
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.97 E-value=1.2e-09 Score=107.62 Aligned_cols=101 Identities=16% Similarity=0.195 Sum_probs=54.0
Q ss_pred cccEEeccccCCccccccccccccc--ccCCCCCcEEeccCCCCcccc-chhhhCCCCCcEEecCCCccccccCc-cccC
Q 039167 557 CLRALKLEVHNERLPEDFIKEVPTN--IEKLLHLKYLNLANQMEIERL-PETLCELYNLEHLNVNCCVKLRELPQ-GIGR 632 (923)
Q Consensus 557 ~Lr~L~L~~~~~~~~~~~~~~lp~~--i~~l~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~ 632 (923)
.|++|++++|. +..++.. ++.+++|++|+|++|. +..+ |..++.+++|++|+|++|. +..+|. .+..
T Consensus 30 ~l~~L~l~~n~-------i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~ 100 (192)
T 1w8a_A 30 HTTELLLNDNE-------LGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLG 100 (192)
T ss_dssp TCSEEECCSCC-------CCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTT
T ss_pred CCCEEECCCCc-------CCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCCCc-CCccCHHHhcC
Confidence 55666666443 4444432 5556666666666665 4443 4555666666666666655 444333 3555
Q ss_pred CCCCCEEeCCCCcccccCCcCCCCCCCCCcCCce
Q 039167 633 LRKLMYLDNECTVSLRYLPVGIGKLIRLRRVKEF 666 (923)
Q Consensus 633 L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~ 666 (923)
+++|++|++++|......|..++.+++|++|++.
T Consensus 101 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 101 LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred CCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence 6666666666653333334555555555555443
No 142
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.96 E-value=8.4e-10 Score=107.05 Aligned_cols=126 Identities=18% Similarity=0.153 Sum_probs=104.9
Q ss_pred ccceEEEEEEecCCCCCccccccccC-CceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccc-c
Q 039167 506 EKKILHLTLAIGCGPMPIYDNIEALR-GLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNI-E 583 (923)
Q Consensus 506 ~~~~~~l~l~~~~~~~~~~~~~~~~~-~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i-~ 583 (923)
...++.+.+..+.... .+.+..+. +|+.|++++|.+... ..+..+++|++|++++|. +..+|..+ +
T Consensus 18 ~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~-------l~~~~~~~~~ 85 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNR-------ICRIGEGLDQ 85 (176)
T ss_dssp TTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSC-------CCEECSCHHH
T ss_pred cCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCc-------ccccCcchhh
Confidence 4567788887776532 23455555 999999999998764 348899999999999876 77777665 8
Q ss_pred CCCCCcEEeccCCCCccccch--hhhCCCCCcEEecCCCccccccCcc----ccCCCCCCEEeCCCCc
Q 039167 584 KLLHLKYLNLANQMEIERLPE--TLCELYNLEHLNVNCCVKLRELPQG----IGRLRKLMYLDNECTV 645 (923)
Q Consensus 584 ~l~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~----i~~L~~L~~L~l~~~~ 645 (923)
.+++|++|++++|. +..+|. .++.+++|++|++++|. +..+|.. ++.+++|++|++++|.
T Consensus 86 ~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 86 ALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred cCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 99999999999998 899997 89999999999999998 7888875 8999999999998874
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.95 E-value=2.1e-09 Score=105.73 Aligned_cols=106 Identities=22% Similarity=0.300 Sum_probs=89.8
Q ss_pred CceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccc-cccccCCCCCcEEeccCCCCccccch-hhhCC
Q 039167 532 GLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEV-PTNIEKLLHLKYLNLANQMEIERLPE-TLCEL 609 (923)
Q Consensus 532 ~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~-~i~~L 609 (923)
+++.|.+++|.+........|..+++|++|+|++|. +..+ |..+..+.+|++|+|++|. +..+|. .+..+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-------l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l 101 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-------LTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGL 101 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-------CCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-------CCCcCHhHcCCcccCCEEECCCCc-CCccCHHHhcCC
Confidence 899999999998765433358899999999999876 5555 6789999999999999999 776664 58999
Q ss_pred CCCcEEecCCCccccccCccccCCCCCCEEeCCCCc
Q 039167 610 YNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTV 645 (923)
Q Consensus 610 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~ 645 (923)
++|++|+|++|......|..+..+++|++|++++|.
T Consensus 102 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 102 HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 999999999998444457889999999999999984
No 144
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.91 E-value=4.9e-09 Score=103.13 Aligned_cols=120 Identities=19% Similarity=0.275 Sum_probs=67.6
Q ss_pred eEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccc-hhhhCCCCC
Q 039167 534 RSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLP-ETLCELYNL 612 (923)
Q Consensus 534 r~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~i~~L~~L 612 (923)
++++++++.+..+ |..+ .+.|++|++++|. +..+|..+..+.+|++|+|++|. +..+| ..+..+++|
T Consensus 13 ~~l~~~~~~l~~i--p~~~--~~~l~~L~L~~n~-------i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L 80 (193)
T 2wfh_A 13 TVVRCSNKGLKVL--PKGI--PRDVTELYLDGNQ-------FTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQL 80 (193)
T ss_dssp TEEECTTSCCSSC--CSCC--CTTCCEEECCSSC-------CCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred CEEEcCCCCCCcC--CCCC--CCCCCEEECCCCc-------CchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCC
Confidence 3455555554432 2111 2456666666554 55566666666666666666666 55554 346666666
Q ss_pred cEEecCCCccccccCc-cccCCCCCCEEeCCCCcccccCCcC-CCCCCCCCcCCceE
Q 039167 613 EHLNVNCCVKLRELPQ-GIGRLRKLMYLDNECTVSLRYLPVG-IGKLIRLRRVKEFV 667 (923)
Q Consensus 613 ~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~ 667 (923)
++|+|++|. +..+|. .+..+++|++|++++| .+..+|.. +..+++|+.|++..
T Consensus 81 ~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 81 LTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp CEEECCSSC-CCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCc-cCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCC
Confidence 666666665 544443 4666666666666666 34445543 55555665555443
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.86 E-value=4.4e-11 Score=118.72 Aligned_cols=106 Identities=20% Similarity=0.193 Sum_probs=60.5
Q ss_pred cccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchh
Q 039167 526 NIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPET 605 (923)
Q Consensus 526 ~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~ 605 (923)
.+..+++|+.|++++|.+.. ++ .+..+++|++|++++|. +..+|..+..+++|++|++++|. +..+| .
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~-------l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~ 110 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNL-------IKKIENLDAVADTLEELWISYNQ-IASLS-G 110 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEE-------ECSCSSHHHHHHHCSEEEEEEEE-CCCHH-H
T ss_pred HHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCC-------cccccchhhcCCcCCEEECcCCc-CCcCC-c
Confidence 45556666666666665544 23 35556666666666443 44555555555666666666665 55555 3
Q ss_pred hhCCCCCcEEecCCCccccccCc--cccCCCCCCEEeCCCC
Q 039167 606 LCELYNLEHLNVNCCVKLRELPQ--GIGRLRKLMYLDNECT 644 (923)
Q Consensus 606 i~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~ 644 (923)
++.+++|++|++++|. +..+|. .+..+++|++|++++|
T Consensus 111 ~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 111 IEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp HHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSC
T ss_pred cccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCC
Confidence 5666666666666654 544443 4556666666666655
No 146
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.84 E-value=5.7e-09 Score=112.37 Aligned_cols=182 Identities=15% Similarity=0.106 Sum_probs=110.8
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAII 256 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 256 (923)
.+++|++..++.+..++..... .......+.|+|++|+|||++|+.+++. .... .++++.+......++.
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~~---~~~~~~~~~~~~~~l~---- 81 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGVN---LRVTSGPAIEKPGDLA---- 81 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHH--HTCC---EEEECTTTCCSHHHHH----
T ss_pred HHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHH--hCCC---EEEEeccccCChHHHH----
Confidence 4699999999988887753110 0123457889999999999999999873 2222 2344333222211111
Q ss_pred HHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCC------------------CCcEEEE
Q 039167 257 EALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCL------------------YGSKILI 318 (923)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~iiv 318 (923)
..+... ..+..+|+|||+........+.+...+.... .+.++|.
T Consensus 82 -----------------~~l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~ 143 (324)
T 1hqc_A 82 -----------------AILANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIG 143 (324)
T ss_dssp -----------------HHHTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEE
T ss_pred -----------------HHHHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEE
Confidence 111110 1356799999997665555555665554321 2346777
Q ss_pred EecchH-HHHH-hcc-cceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHHHHH
Q 039167 319 TTRKEA-VARI-MGS-TNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTIASLL 390 (923)
Q Consensus 319 TtR~~~-v~~~-~~~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l 390 (923)
||.... +... ... ..++.+.+++.++..+++...+........ .+....+++.++|.|-.+..+...+
T Consensus 144 ~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 144 ATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRIT----EEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred eCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHccCCHHHHHHHHHHH
Confidence 766432 1111 112 258999999999999998877643222111 2456788899999998887666554
No 147
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.84 E-value=6e-11 Score=117.74 Aligned_cols=111 Identities=18% Similarity=0.223 Sum_probs=94.8
Q ss_pred chHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchhhhCCCCCcEEecCCCccccccC
Q 039167 548 LPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPETLCELYNLEHLNVNCCVKLRELP 627 (923)
Q Consensus 548 l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp 627 (923)
++..+..+++|++|++++|. +..+| .+..+++|++|++++|. +..+|..++.+++|++|++++|. +..+|
T Consensus 40 l~~~~~~l~~L~~L~ls~n~-------l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~-l~~l~ 109 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNN-------IEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASLS 109 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEE-------ESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEE-CCCHH
T ss_pred hhHHHhcCCCCCEEECCCCC-------Ccccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCc-CCcCC
Confidence 45578999999999999765 67788 88999999999999998 88999988899999999999997 88887
Q ss_pred ccccCCCCCCEEeCCCCcccccCCc--CCCCCCCCCcCCceEecc
Q 039167 628 QGIGRLRKLMYLDNECTVSLRYLPV--GIGKLIRLRRVKEFVVGG 670 (923)
Q Consensus 628 ~~i~~L~~L~~L~l~~~~~l~~~p~--~i~~L~~L~~L~~~~~~~ 670 (923)
.+..+++|++|++++| .+..+|. .+..+++|++|++..+..
T Consensus 110 -~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 110 -GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp -HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred -ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 6899999999999998 4555553 678889999988776654
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.83 E-value=6.4e-09 Score=100.31 Aligned_cols=105 Identities=20% Similarity=0.266 Sum_probs=77.1
Q ss_pred eEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccc-cccccCCCCCcEEeccCCCCccccchh-hhCCCC
Q 039167 534 RSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEV-PTNIEKLLHLKYLNLANQMEIERLPET-LCELYN 611 (923)
Q Consensus 534 r~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~-i~~L~~ 611 (923)
+.++++++.+..+ |..+ .+.|++|+|++|. +..+ |..++++++|++|+|++|. +..+|.. +.++++
T Consensus 15 ~~l~~~~n~l~~i--P~~~--~~~L~~L~Ls~N~-------l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~ 82 (174)
T 2r9u_A 15 TLVNCQNIRLASV--PAGI--PTDKQRLWLNNNQ-------ITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQ 82 (174)
T ss_dssp SEEECCSSCCSSC--CSCC--CTTCSEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred cEEEeCCCCCCcc--CCCc--CCCCcEEEeCCCC-------ccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcch
Confidence 5677777776543 3222 3778888888765 5555 5567888888888888887 8888765 478888
Q ss_pred CcEEecCCCccccccCcc-ccCCCCCCEEeCCCCcccccCCc
Q 039167 612 LEHLNVNCCVKLRELPQG-IGRLRKLMYLDNECTVSLRYLPV 652 (923)
Q Consensus 612 L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~ 652 (923)
|++|+|++|. +..+|.. +..+++|++|++++| .+...+.
T Consensus 83 L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N-~~~c~~~ 122 (174)
T 2r9u_A 83 LTQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNN-PWDCECR 122 (174)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CBCTTBG
T ss_pred hhEEECCCCc-cceeCHHHhccccCCCEEEeCCC-Ccccccc
Confidence 8888888886 7777765 788888888888887 4444443
No 149
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.83 E-value=1.6e-08 Score=98.00 Aligned_cols=104 Identities=31% Similarity=0.439 Sum_probs=46.0
Q ss_pred CCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCccccccccccccc-ccCCCCCcEEeccCCCCccccchh-hhC
Q 039167 531 RGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTN-IEKLLHLKYLNLANQMEIERLPET-LCE 608 (923)
Q Consensus 531 ~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~-i~~ 608 (923)
++|+.|.+++|.+... .+..|..+++|++|++++|. +..+|.. +..+.+|++|++++|. +..+|.. +..
T Consensus 28 ~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~ 98 (177)
T 2o6r_A 28 SSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQ-------IQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDK 98 (177)
T ss_dssp TTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred CCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCc-------ceEeChhHccCCCccCEEECCCCC-ccccCHHHhhC
Confidence 3445555555444332 12223444555555555433 3333322 3444555555555544 4444332 344
Q ss_pred CCCCcEEecCCCccccccCcc-ccCCCCCCEEeCCCC
Q 039167 609 LYNLEHLNVNCCVKLRELPQG-IGRLRKLMYLDNECT 644 (923)
Q Consensus 609 L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~ 644 (923)
+++|++|++++|. +..+|.. +..+++|++|++++|
T Consensus 99 l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 99 LTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred CcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCC
Confidence 4555555555443 4444433 234445555555444
No 150
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.82 E-value=6e-08 Score=104.50 Aligned_cols=188 Identities=13% Similarity=0.045 Sum_probs=117.5
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCccccccc-ceEEEEEeCCcccHHHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNF-EKRIWVCVSDPFDEFRIARAI 255 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i 255 (923)
.+++|+++.++.+..++... ....+.|+|++|+||||+|+.+++... ...+ ...+.+..+....... .+..
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~-~~~~ 96 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERGINV-IREK 96 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHHHHT-THHH
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCchHH-HHHH
Confidence 35899999999999988643 333489999999999999999987411 1111 1233343332211111 1111
Q ss_pred HHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecchH-HHHH-hcccc
Q 039167 256 IEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRKEA-VARI-MGSTN 333 (923)
Q Consensus 256 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~-~~~~~ 333 (923)
+.......+ ...+++.++|+||++......++.+...+.....++++|+||.... +... .....
T Consensus 97 ~~~~~~~~~--------------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 162 (327)
T 1iqp_A 97 VKEFARTKP--------------IGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 162 (327)
T ss_dssp HHHHHHSCC--------------GGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEE
T ss_pred HHHHHhhCC--------------cCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCc
Confidence 111100000 0125788999999977666677778887776666788998887642 1111 12345
Q ss_pred eEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHHHHH
Q 039167 334 IISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTIASLL 390 (923)
Q Consensus 334 ~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l 390 (923)
.+++.+++.++..+++...+...+.... .+....|++.++|.|-.+..+....
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 163 IFRFRPLRDEDIAKRLRYIAENEGLELT----EEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCEEC----HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 8999999999999999877643222111 2346778889999998765554433
No 151
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.79 E-value=1.7e-08 Score=97.86 Aligned_cols=125 Identities=25% Similarity=0.361 Sum_probs=98.5
Q ss_pred ceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccc-cccCCCCCcEEeccCCCCccccchh-hhCCC
Q 039167 533 LRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPT-NIEKLLHLKYLNLANQMEIERLPET-LCELY 610 (923)
Q Consensus 533 Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~-i~~L~ 610 (923)
.+.+.++++.+..+ |. .-.+.|++|++++|. +..+|. .++.+++|++|++++|. +..+|.. ++.++
T Consensus 9 ~~~l~~~~~~l~~~--p~--~~~~~l~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~ 76 (177)
T 2o6r_A 9 GTEIRCNSKGLTSV--PT--GIPSSATRLELESNK-------LQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLT 76 (177)
T ss_dssp TTEEECCSSCCSSC--CT--TCCTTCSEEECCSSC-------CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCT
T ss_pred CCEEEecCCCCccC--CC--CCCCCCcEEEeCCCc-------ccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCC
Confidence 45677777776553 22 234789999999776 666665 46889999999999998 8888764 68999
Q ss_pred CCcEEecCCCccccccCcc-ccCCCCCCEEeCCCCcccccCCcC-CCCCCCCCcCCceEeccc
Q 039167 611 NLEHLNVNCCVKLRELPQG-IGRLRKLMYLDNECTVSLRYLPVG-IGKLIRLRRVKEFVVGGG 671 (923)
Q Consensus 611 ~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~ 671 (923)
+|++|++++|. +..+|.. +..+++|++|++++| .+..+|.. +..+++|+.|++..+...
T Consensus 77 ~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 77 KLTILYLHENK-LQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEEECCCCC-ccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence 99999999997 7777765 689999999999999 56677765 477899999887766543
No 152
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.78 E-value=1.7e-08 Score=99.24 Aligned_cols=99 Identities=18% Similarity=0.251 Sum_probs=82.3
Q ss_pred cEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchhhhCCCCCcEEecCCCccccccC-ccccCCCCCC
Q 039167 559 RALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPETLCELYNLEHLNVNCCVKLRELP-QGIGRLRKLM 637 (923)
Q Consensus 559 r~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~ 637 (923)
++++++++. +..+|..+. .+|++|+|++|. +..+|..+..+++|++|+|++|. +..+| ..+..+++|+
T Consensus 13 ~~l~~~~~~-------l~~ip~~~~--~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~ 81 (193)
T 2wfh_A 13 TVVRCSNKG-------LKVLPKGIP--RDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLL 81 (193)
T ss_dssp TEEECTTSC-------CSSCCSCCC--TTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred CEEEcCCCC-------CCcCCCCCC--CCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCC
Confidence 678888654 788887664 689999999998 89999999999999999999998 77766 4589999999
Q ss_pred EEeCCCCcccccCC-cCCCCCCCCCcCCceEec
Q 039167 638 YLDNECTVSLRYLP-VGIGKLIRLRRVKEFVVG 669 (923)
Q Consensus 638 ~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~ 669 (923)
+|++++|. +..+| ..++.+++|+.|++..+.
T Consensus 82 ~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N~ 113 (193)
T 2wfh_A 82 TLILSYNR-LRCIPPRTFDGLKSLRLLSLHGND 113 (193)
T ss_dssp EEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCc-cCEeCHHHhCCCCCCCEEECCCCC
Confidence 99999994 55555 468888999988776544
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.76 E-value=1.6e-08 Score=97.48 Aligned_cols=102 Identities=25% Similarity=0.354 Sum_probs=85.6
Q ss_pred ccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCcccc-chhhhCCCCCcEEecCCCccccccCcc-ccCCCC
Q 039167 558 LRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERL-PETLCELYNLEHLNVNCCVKLRELPQG-IGRLRK 635 (923)
Q Consensus 558 Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~ 635 (923)
-+.++++++. +..+|..+. .+|++|+|++|. +..+ |..++++++|++|+|++|. +..+|.. +..+++
T Consensus 14 ~~~l~~~~n~-------l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~ 82 (174)
T 2r9u_A 14 QTLVNCQNIR-------LASVPAGIP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQ 82 (174)
T ss_dssp SSEEECCSSC-------CSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred CcEEEeCCCC-------CCccCCCcC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcch
Confidence 3788998665 788888775 899999999999 7777 6689999999999999997 8888876 589999
Q ss_pred CCEEeCCCCcccccCCcC-CCCCCCCCcCCceEeccc
Q 039167 636 LMYLDNECTVSLRYLPVG-IGKLIRLRRVKEFVVGGG 671 (923)
Q Consensus 636 L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~ 671 (923)
|++|++++| .+..+|.. ++.+++|+.|++..+...
T Consensus 83 L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 83 LTQLDLNDN-HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred hhEEECCCC-ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 999999999 66777765 888999999887665443
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.73 E-value=2.3e-08 Score=96.06 Aligned_cols=99 Identities=24% Similarity=0.308 Sum_probs=62.1
Q ss_pred ceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccc-cccccCCCCCcEEeccCCCCccccchh-hhCCC
Q 039167 533 LRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEV-PTNIEKLLHLKYLNLANQMEIERLPET-LCELY 610 (923)
Q Consensus 533 Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~-i~~L~ 610 (923)
.+.++++++.+..+ |..+ .+.|++|+|++|. +..+ |..+..+.+|++|+|++|. +..+|.. +..++
T Consensus 11 ~~~l~~s~n~l~~i--p~~~--~~~l~~L~L~~N~-------i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~ 78 (170)
T 3g39_A 11 GTTVDCSGKSLASV--PTGI--PTTTQVLYLYDNQ-------ITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLT 78 (170)
T ss_dssp TTEEECTTSCCSSC--CSCC--CTTCSEEECCSSC-------CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCT
T ss_pred CCEEEeCCCCcCcc--CccC--CCCCcEEEcCCCc-------CCccChhhhcCcccCCEEECCCCC-cCccChhhccCCC
Confidence 35666776665542 2212 3567777777554 5555 4456677777777777776 6666654 46777
Q ss_pred CCcEEecCCCccccccCcc-ccCCCCCCEEeCCCC
Q 039167 611 NLEHLNVNCCVKLRELPQG-IGRLRKLMYLDNECT 644 (923)
Q Consensus 611 ~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~ 644 (923)
+|++|+|++|. +..+|.. +..+++|++|++++|
T Consensus 79 ~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 79 QLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCC
Confidence 77777777765 6666553 666777777777766
No 155
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.72 E-value=8.4e-08 Score=103.35 Aligned_cols=289 Identities=11% Similarity=0.085 Sum_probs=136.7
Q ss_pred ccCCceEEEeCCCCCCCccchHHhhc-CCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccc-hhh
Q 039167 529 ALRGLRSLLLESTKHSSVILPQLFDK-LTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLP-ETL 606 (923)
Q Consensus 529 ~~~~Lr~L~l~~~~~~~~~l~~~~~~-~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~i 606 (923)
.+.+++.|.+.++- ....+. .+.. +++|++|||++|. +......-+.++.++++.+..+. +| ..+
T Consensus 23 ~~~~l~~L~l~g~i-~~~~~~-~l~~~l~~L~~LdLs~n~-------i~~~~~~~~~~~~~~~~~~~~~~----I~~~aF 89 (329)
T 3sb4_A 23 EANSITHLTLTGKL-NAEDFR-HLRDEFPSLKVLDISNAE-------IKMYSGKAGTYPNGKFYIYMANF----VPAYAF 89 (329)
T ss_dssp HHHHCSEEEEEEEE-CHHHHH-HHHHSCTTCCEEEEEEEE-------ECCEEESSSSSGGGCCEEECTTE----ECTTTT
T ss_pred hhCceeEEEEeccc-cHHHHH-HHHHhhccCeEEecCcce-------eEEecCccccccccccccccccc----cCHHHh
Confidence 35567777777642 111122 2334 7889999998776 33111111122234555554442 33 234
Q ss_pred hC--------CCCCcEEecCCCccccccCcc-ccCCCCCCEEeCCCCcccccCC-cCCCCCCCCCcCCceEecccCCccc
Q 039167 607 CE--------LYNLEHLNVNCCVKLRELPQG-IGRLRKLMYLDNECTVSLRYLP-VGIGKLIRLRRVKEFVVGGGYGRAC 676 (923)
Q Consensus 607 ~~--------L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~ 676 (923)
.. +.+|+.|+|.. . +..++.. +..+++|+.|++.++. +..++ ..+..+.++..+.......
T Consensus 90 ~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~------ 160 (329)
T 3sb4_A 90 SNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGSSDA------ 160 (329)
T ss_dssp EEEETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHH------
T ss_pred cccccccccccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCC-ccccchhhhcCCCceEEecCcchhh------
Confidence 55 88888888877 3 7777654 7778888888888773 33333 3344443333332211000
Q ss_pred ccccccCCCCCCCceEeCCCCCCChhhhHHhhcCCCCCCC-cEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEee
Q 039167 677 SLGSLKKLNLLRDCRIRGLGDVSDVDEARRAELEKKKNLF-ELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINK 755 (923)
Q Consensus 677 ~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~ 755 (923)
...+..+.. ..+..+..|+ .+.+.... .....+...-..+.++..+.+.+
T Consensus 161 ----~~~~~~i~~-----------------~~f~~~~~L~~~i~~~~~~--------~l~~~~~~~~~~~~~~~~l~~~~ 211 (329)
T 3sb4_A 161 ----YRFKNRWEH-----------------FAFIEGEPLETTIQVGAMG--------KLEDEIMKAGLQPRDINFLTIEG 211 (329)
T ss_dssp ----HHTSTTTTT-----------------SCEEESCCCEEEEEECTTC--------CHHHHHHHTTCCGGGCSEEEEEE
T ss_pred ----hhccccccc-----------------cccccccccceeEEecCCC--------cHHHHHhhcccCccccceEEEee
Confidence 000000000 0011112222 11111100 01111122222344555555554
Q ss_pred ecCCCCCcCcccccccccccEEeEeCCCCCCCCCC--CCCCCCccceeccCCcCceEeCccccCCCCCCCCcccccCccc
Q 039167 756 YRGKRNVVPKNWIMSLTNLRFLGLHEWRNCEHLPP--LGKLPSLESLYIAGMKSVKRVGNEFLGVESDMDGSSVIAFAKL 833 (923)
Q Consensus 756 ~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L 833 (923)
...... + ......+++|+.|+|.+|. ...+|. +..+++|+.|.+.++ ++.++...+. ++++|
T Consensus 212 ~l~~~~-~-~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~-----------~~~~L 275 (329)
T 3sb4_A 212 KLDNAD-F-KLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFS-----------NCGRL 275 (329)
T ss_dssp CCCHHH-H-HHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT-----------TCTTC
T ss_pred eecHHH-H-HHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc--cceehHHHhh-----------CChhc
Confidence 322110 0 1011135666666666653 333433 566666666666654 5555543221 33445
Q ss_pred c-eeeccccccccccccccccccccccCcccceeeecccccCCCCCc-CCCCCCCccEEEe
Q 039167 834 K-KLTFYIMEELEEWDLGTAIKGEIIIMPRLSSLTIWSCRKLKALPD-HLLQKSTLQKLEI 892 (923)
Q Consensus 834 ~-~L~l~~~~~L~~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~lp~-~l~~l~sL~~L~l 892 (923)
+ .|.+.+ +++.+ -+..+..+++|+.|++..+. +..++. .+.++++|+.++.
T Consensus 276 ~~~l~l~~--~l~~I-----~~~aF~~c~~L~~l~l~~n~-i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 276 AGTLELPA--SVTAI-----EFGAFMGCDNLRYVLATGDK-ITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CEEEEECT--TCCEE-----CTTTTTTCTTEEEEEECSSC-CCEECTTTTCTTCCCCEEEC
T ss_pred cEEEEEcc--cceEE-----chhhhhCCccCCEEEeCCCc-cCccchhhhcCCcchhhhcc
Confidence 4 554442 22211 12346678889999887764 555554 5777888888764
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.68 E-value=6e-08 Score=93.13 Aligned_cols=103 Identities=23% Similarity=0.310 Sum_probs=81.8
Q ss_pred cccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCcccc-chhhhCCCCCcEEecCCCccccccCcc-ccCCC
Q 039167 557 CLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERL-PETLCELYNLEHLNVNCCVKLRELPQG-IGRLR 634 (923)
Q Consensus 557 ~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~ 634 (923)
..++++++++. +..+|..+. .+|++|+|++|. +..+ |..++.+++|++|+|++|. +..+|.. +..++
T Consensus 10 ~~~~l~~s~n~-------l~~ip~~~~--~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~ 78 (170)
T 3g39_A 10 SGTTVDCSGKS-------LASVPTGIP--TTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLT 78 (170)
T ss_dssp ETTEEECTTSC-------CSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCT
T ss_pred CCCEEEeCCCC-------cCccCccCC--CCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCC-cCccChhhccCCC
Confidence 35788888665 778887664 789999999998 7776 6678899999999999987 7777766 57899
Q ss_pred CCCEEeCCCCcccccCCcC-CCCCCCCCcCCceEeccc
Q 039167 635 KLMYLDNECTVSLRYLPVG-IGKLIRLRRVKEFVVGGG 671 (923)
Q Consensus 635 ~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~ 671 (923)
+|++|++++| .+..+|.. ++.+++|+.|++..+...
T Consensus 79 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 79 QLTQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp TCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCEEECCCC-ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 9999999988 56667654 788889988887766543
No 157
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.66 E-value=3.2e-07 Score=96.10 Aligned_cols=170 Identities=10% Similarity=-0.032 Sum_probs=105.6
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCccccc------ccceEEEEEeCCcccHHHH
Q 039167 178 EIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEK------NFEKRIWVCVSDPFDEFRI 251 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------~F~~~~wv~~s~~~~~~~~ 251 (923)
.+.||+++.++|...|...- .......+.|+|++|+|||++|++|++...... .| ..+.++.....+...+
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i--~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~ 97 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSL--MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDAL 97 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHH
T ss_pred ccCCHHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHH
Confidence 47899999999988776432 134667889999999999999999998532111 12 3556776677788899
Q ss_pred HHHHHHHHhCCCCCC-cCHHHHHHHHHHH--hcCCceEEEecCCCCCChhhHHHhHHhhhcC-CCCc--EEEEEecchH-
Q 039167 252 ARAIIEALTGCLPNF-VEFQSLMQHIQKH--VAGKKLLLVLDDVWNENFHKWEQFNNCLKNC-LYGS--KILITTRKEA- 324 (923)
Q Consensus 252 ~~~i~~~l~~~~~~~-~~~~~~~~~l~~~--l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs--~iivTtR~~~- 324 (923)
+..|++++.+..... ...+.+...+.+. -.+++++++||++..-. .-+.+...+.+. ...+ -||.++...+
T Consensus 98 ~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 98 YEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCC
T ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCccc
Confidence 999999997643222 2233333333322 24678999999995432 233444444321 1122 3333443321
Q ss_pred ----H----HHHhcccceEeCCCCChHHHHHHHHHhh
Q 039167 325 ----V----ARIMGSTNIISVNVLSGMECWLVFESLA 353 (923)
Q Consensus 325 ----v----~~~~~~~~~~~l~~L~~~~~~~lf~~~a 353 (923)
+ ...++ ...+.+.+.+.++-.+++.+++
T Consensus 176 ~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 176 IREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp CHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHH
T ss_pred chhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHH
Confidence 1 11111 2478999999999999998775
No 158
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.64 E-value=2.9e-07 Score=101.12 Aligned_cols=196 Identities=15% Similarity=0.207 Sum_probs=114.5
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAII 256 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 256 (923)
.+++|++..++.+...+.... ....+.|+|++|+||||+|+.+.+.......+. ..+.........+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-------SSCCSSSHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCcccHHHHHHh
Confidence 359999999999999886432 345788999999999999999977421111110 00000000000000
Q ss_pred HHH-------hCC-CCCCcCHHHHHHHHHHH-hcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecchH-HH
Q 039167 257 EAL-------TGC-LPNFVEFQSLMQHIQKH-VAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRKEA-VA 326 (923)
Q Consensus 257 ~~l-------~~~-~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~ 326 (923)
... ... .....+...+...+... ..+++.+||+||+...+....+.+...+.....+..+|++|.... +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 000 000 00111222221111110 135678999999977666677778777766555677777776432 21
Q ss_pred -HHhcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHHH
Q 039167 327 -RIMGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTIAS 388 (923)
Q Consensus 327 -~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 388 (923)
........+++.+++.++..+++...+-..+.... .+....|++.++|.|..+..+..
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~----~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHCCCCHHHHHHHHH
Confidence 11233568999999999999999876522111111 23467889999999988766543
No 159
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.62 E-value=2.9e-08 Score=107.00 Aligned_cols=102 Identities=15% Similarity=0.152 Sum_probs=70.3
Q ss_pred ccccccEEeEeCCCCCCCCCCC-CCCCCccceeccCCcCceEeCccccCCCCCCCCcccccCcccceeeccccccccccc
Q 039167 770 SLTNLRFLGLHEWRNCEHLPPL-GKLPSLESLYIAGMKSVKRVGNEFLGVESDMDGSSVIAFAKLKKLTFYIMEELEEWD 848 (923)
Q Consensus 770 ~l~~L~~L~L~~~~~~~~l~~l-~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~ 848 (923)
...++..+.+.+.........+ ..+++|+.|+|.+|. ++.++...+. .+++|+.|.+.+ +++.+
T Consensus 200 ~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~-----------~~~~L~~l~l~~--ni~~I- 264 (329)
T 3sb4_A 200 QPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFA-----------QKKYLLKIKLPH--NLKTI- 264 (329)
T ss_dssp CGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTT-----------TCTTCCEEECCT--TCCEE-
T ss_pred CccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhh-----------CCCCCCEEECCc--cccee-
Confidence 4677888888775221111111 237899999999876 7788765432 466788887764 23322
Q ss_pred cccccccccccCcccc-eeeecccccCCCCC-cCCCCCCCccEEEe
Q 039167 849 LGTAIKGEIIIMPRLS-SLTIWSCRKLKALP-DHLLQKSTLQKLEI 892 (923)
Q Consensus 849 ~~~~~~~~~~~lp~L~-~L~l~~c~~l~~lp-~~l~~l~sL~~L~l 892 (923)
.+..+..+++|+ .|++.+ .+..++ ..+.++++|+.|++
T Consensus 265 ----~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 265 ----GQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLA 304 (329)
T ss_dssp ----CTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEE
T ss_pred ----hHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEe
Confidence 234577899999 999988 466665 56889999999999
No 160
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.58 E-value=3.8e-07 Score=97.76 Aligned_cols=183 Identities=9% Similarity=0.009 Sum_probs=112.7
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccc-eEEEEEeCCcccHHHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFE-KRIWVCVSDPFDEFRIARAI 255 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i 255 (923)
.+++|++..++.+.+++... ....+.++|++|+|||++|+.+++... ...+. ..+.++.+......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~------ 83 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGID------ 83 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCTT------
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccChH------
Confidence 35899999999998887542 333489999999999999999987311 11111 12333333211110
Q ss_pred HHHHhCCCCCCcCHHHHHHHHHHH--h-cCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecchH-HHHH-hc
Q 039167 256 IEALTGCLPNFVEFQSLMQHIQKH--V-AGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRKEA-VARI-MG 330 (923)
Q Consensus 256 ~~~l~~~~~~~~~~~~~~~~l~~~--l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~-~~ 330 (923)
............ + .+++.++|+|++........+.+...+.....+.++|+||.... +... ..
T Consensus 84 ------------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 84 ------------VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp ------------TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred ------------HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence 111111111111 1 25688999999976655556667777765556778888876543 2111 23
Q ss_pred ccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHHH
Q 039167 331 STNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTIAS 388 (923)
Q Consensus 331 ~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 388 (923)
....+++.+++.++..+++...+...+.... .+....+++.++|.+-.+.....
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGVKIT----EDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp TCEEEECCCCCHHHHHHHHHHHHHTTCCCBC----HHHHHHHHHTTTTCHHHHHHHHH
T ss_pred hCeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 3458999999999999998876643222112 23467788999999886654433
No 161
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.50 E-value=6.2e-07 Score=88.02 Aligned_cols=150 Identities=13% Similarity=0.124 Sum_probs=81.9
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCccc---cc--ccceEEEEEeCCcccHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDV---EK--NFEKRIWVCVSDPFDEFRI 251 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~--~F~~~~wv~~s~~~~~~~~ 251 (923)
..++||+++++++.+.+... ..+.+.|+|++|+|||++|+.+++...- .. .....+++..+. +
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 89 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------L 89 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------H
T ss_pred cccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------H
Confidence 45899999999999998542 3456789999999999999999874211 00 112233433211 1
Q ss_pred HHHHHHHHhCCCCCCcCHHHHHHHHHHHh--cCCceEEEecCCCCCC--------hhhHHHhHHhhhcCCCCcEEEEEec
Q 039167 252 ARAIIEALTGCLPNFVEFQSLMQHIQKHV--AGKKLLLVLDDVWNEN--------FHKWEQFNNCLKNCLYGSKILITTR 321 (923)
Q Consensus 252 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivTtR 321 (923)
. .. .............+.+.+ .+++.+|||||+.... ......+...+.. . +..+|.||.
T Consensus 90 ~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~-~-~~~~i~~~~ 159 (195)
T 1jbk_A 90 V-------AG-AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR-G-ELHCVGATT 159 (195)
T ss_dssp H-------TT-TCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT-T-SCCEEEEEC
T ss_pred h-------cc-CCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc-C-CeEEEEeCC
Confidence 0 00 000001111111121211 3567899999995431 1113334444432 2 345777776
Q ss_pred chHHHH-------HhcccceEeCCCCChHHHHHH
Q 039167 322 KEAVAR-------IMGSTNIISVNVLSGMECWLV 348 (923)
Q Consensus 322 ~~~v~~-------~~~~~~~~~l~~L~~~~~~~l 348 (923)
...... .......+.+.+++.++..++
T Consensus 160 ~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~i 193 (195)
T 1jbk_A 160 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAI 193 (195)
T ss_dssp HHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHH
Confidence 554321 112233688888888877654
No 162
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.47 E-value=4.7e-07 Score=92.55 Aligned_cols=173 Identities=12% Similarity=0.046 Sum_probs=99.7
Q ss_pred ceecch---hhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHH
Q 039167 178 EIFGRK---DEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARA 254 (923)
Q Consensus 178 ~~vGr~---~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 254 (923)
+|+|.+ ..++.+..+.... ..+.+.|+|++|+||||+|+.+++. .......+.|+..+...+.
T Consensus 29 ~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~------ 94 (242)
T 3bos_A 29 SYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI------ 94 (242)
T ss_dssp TSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS------
T ss_pred hccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH------
Confidence 466632 4455555555321 4567899999999999999999883 3333334567665432110
Q ss_pred HHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCChhh--HHHhHHhhhcC-CCC-cEEEEEecch-------
Q 039167 255 IIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHK--WEQFNNCLKNC-LYG-SKILITTRKE------- 323 (923)
Q Consensus 255 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~g-s~iivTtR~~------- 323 (923)
+.+ .+ +.+ .++.+||+||++...... .+.+...+... ..+ .++|+||+..
T Consensus 95 ~~~-----------------~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~ 155 (242)
T 3bos_A 95 STA-----------------LL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFV 155 (242)
T ss_dssp CGG-----------------GG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCC
T ss_pred HHH-----------------HH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHh
Confidence 000 00 011 356799999996543222 33344443221 112 2577777632
Q ss_pred --HHHHHhcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHH
Q 039167 324 --AVARIMGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTIA 387 (923)
Q Consensus 324 --~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 387 (923)
.+...+.....+++.+++.++..+++...+...+.. .. .+....+++.++|.+-.+..+.
T Consensus 156 ~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~-~~---~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 156 LPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQ-LP---EDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp CHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCC-CC---HHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCC-CC---HHHHHHHHHHccCCHHHHHHHH
Confidence 222222223689999999999999998866322211 11 2446778888999887665443
No 163
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.43 E-value=8e-06 Score=89.82 Aligned_cols=139 Identities=12% Similarity=0.165 Sum_probs=81.0
Q ss_pred CCCCcEEEeeecCCCCCcCcccccccccccEEeEeCCCCC----CCCCC--CCCCCCccceeccCCcCceEeCccccCCC
Q 039167 746 PNLKELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRNC----EHLPP--LGKLPSLESLYIAGMKSVKRVGNEFLGVE 819 (923)
Q Consensus 746 ~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~----~~l~~--l~~L~~L~~L~L~~~~~l~~~~~~~~~~~ 819 (923)
.+|+.+.+.. .... +++..|..+++|+.+.+.++... ..++. +.++++|+.+.|.+ +++.++...+.
T Consensus 248 ~~L~~i~lp~-~i~~--I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~-- 320 (401)
T 4fdw_A 248 SGITTVKLPN-GVTN--IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLG-- 320 (401)
T ss_dssp CCCSEEEEET-TCCE--ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTT--
T ss_pred CCccEEEeCC-CccE--EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhc--
Confidence 4566666632 2233 44556777888888888776432 12333 77788888888873 36666654332
Q ss_pred CCCCCcccccCcccceeeccccccccccccccccccccccCcccceeeecccccCCCCC-cCCCCC-CCccEEEeccCCc
Q 039167 820 SDMDGSSVIAFAKLKKLTFYIMEELEEWDLGTAIKGEIIIMPRLSSLTIWSCRKLKALP-DHLLQK-STLQKLEIWGGCH 897 (923)
Q Consensus 820 ~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~lp-~~l~~l-~sL~~L~l~~~c~ 897 (923)
++.+|+.+.+.. +++.+. ...+..+ +|+.|.+.+|.. ..++ ..+.++ .+++.|.+ -.
T Consensus 321 ---------~c~~L~~l~lp~--~l~~I~-----~~aF~~~-~L~~l~l~~n~~-~~l~~~~F~~~~~~l~~l~v-p~-- 379 (401)
T 4fdw_A 321 ---------GNRKVTQLTIPA--NVTQIN-----FSAFNNT-GIKEVKVEGTTP-PQVFEKVWYGFPDDITVIRV-PA-- 379 (401)
T ss_dssp ---------TCCSCCEEEECT--TCCEEC-----TTSSSSS-CCCEEEECCSSC-CBCCCSSCCCSCTTCCEEEE-CG--
T ss_pred ---------CCCCccEEEECc--cccEEc-----HHhCCCC-CCCEEEEcCCCC-cccccccccCCCCCccEEEe-CH--
Confidence 345677766642 232221 2345677 999999999853 3343 345556 47889999 22
Q ss_pred hhhhhhccCCCCCCCcc
Q 039167 898 ILQERYREETGEDWPNI 914 (923)
Q Consensus 898 ~l~~~~~~~~~~~~~~i 914 (923)
...+.++.. ..|...
T Consensus 380 ~~~~~y~~a--~~W~~f 394 (401)
T 4fdw_A 380 ESVEKYKNA--NGWRDF 394 (401)
T ss_dssp GGHHHHHHS--TTGGGG
T ss_pred HHHHHhhhc--cchhhh
Confidence 334455433 346543
No 164
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.39 E-value=1.3e-05 Score=86.30 Aligned_cols=178 Identities=15% Similarity=0.134 Sum_probs=107.0
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAII 256 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 256 (923)
.+++|++..++.+..++..... .......|.|+|++|+|||++|+.+.+. ....| +.++.+....
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~~---~~~~~~~~~~--------- 93 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYE--MSANI---KTTAAPMIEK--------- 93 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCCE---EEEEGGGCCS---------
T ss_pred HHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEecchhccc---------
Confidence 4699999999999888864310 0124456899999999999999999873 33222 2232221111
Q ss_pred HHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCC------------------CCcEEEE
Q 039167 257 EALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCL------------------YGSKILI 318 (923)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~iiv 318 (923)
.......+.. ..+..+|+||++..........+...+.... ++..+|.
T Consensus 94 ------------~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (338)
T 3pfi_A 94 ------------SGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIG 159 (338)
T ss_dssp ------------HHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEE
T ss_pred ------------hhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEE
Confidence 1111111111 2467899999997665555556666655432 1245666
Q ss_pred EecchHH-HHH-hcc-cceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHH
Q 039167 319 TTRKEAV-ARI-MGS-TNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTIA 387 (923)
Q Consensus 319 TtR~~~v-~~~-~~~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 387 (923)
||..... ... ... ...+.+.+++.++...++...+...... .. .+....+++.+.|.|-.+..+.
T Consensus 160 atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~-~~---~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 160 ATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKT-CE---EKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCE-EC---HHHHHHHHHTTTTCHHHHHHHH
T ss_pred eCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCC-CC---HHHHHHHHHHHCcCHHHHHHHH
Confidence 6654321 111 122 3689999999999999988766332211 11 2446778889999985554443
No 165
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.39 E-value=3e-06 Score=92.20 Aligned_cols=194 Identities=9% Similarity=0.015 Sum_probs=113.5
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccc-eEEEEEeCCcccHHHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFE-KRIWVCVSDPFDEFRIARAI 255 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i 255 (923)
.+++|+++.++.+..++... ....+.|+|++|+||||+|+.+.+.......+. ..+.+..+....... ....
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSA------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISI-VREK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCT------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHH-HTTH
T ss_pred HHhhCCHHHHHHHHHHHhcC------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHH-HHHH
Confidence 46899999999999988543 222389999999999999999987421111121 223333333222222 2222
Q ss_pred HHHHhCC-CCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecchH-HHHH-hccc
Q 039167 256 IEALTGC-LPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRKEA-VARI-MGST 332 (923)
Q Consensus 256 ~~~l~~~-~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~-~~~~ 332 (923)
+...... ....... .....-.+++-+|++|++..........+...+.......++|++|.... +... ....
T Consensus 110 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 110 VKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp HHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred HHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence 2222111 0000000 00001123556999999966655566667777766555677777775432 2111 1224
Q ss_pred ceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHH
Q 039167 333 NIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTI 386 (923)
Q Consensus 333 ~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 386 (923)
..+++.+++.++....+...+...+.... .+....|++.++|.|-.+..+
T Consensus 185 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 185 SKFRFKALDASNAIDRLRFISEQENVKCD----DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHHHHHHHHTSSCHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 58899999999999998876533221111 245778999999998865443
No 166
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.31 E-value=9.5e-07 Score=95.88 Aligned_cols=98 Identities=16% Similarity=0.134 Sum_probs=66.3
Q ss_pred EEEeCCC-CCCCccchHHhhcCCcccEEeccc-cCCccccccccccc-ccccCCCCCcEEeccCCCCccccc-hhhhCCC
Q 039167 535 SLLLEST-KHSSVILPQLFDKLTCLRALKLEV-HNERLPEDFIKEVP-TNIEKLLHLKYLNLANQMEIERLP-ETLCELY 610 (923)
Q Consensus 535 ~L~l~~~-~~~~~~l~~~~~~~~~Lr~L~L~~-~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~l~~lp-~~i~~L~ 610 (923)
.++++++ .+.. +|. +..+.+|++|+|++ |. +..+| ..|+.|.+|++|+|++|. +..+| ..+++|+
T Consensus 12 ~v~~~~~n~l~~--ip~-l~~~~~L~~L~l~~~n~-------l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~ 80 (347)
T 2ifg_A 12 GLRCTRDGALDS--LHH-LPGAENLTELYIENQQH-------LQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTP 80 (347)
T ss_dssp CEECCSSCCCTT--TTT-SCSCSCCSEEECCSCSS-------CCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCS
T ss_pred EEEcCCCCCCCc--cCC-CCCCCCeeEEEccCCCC-------CCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCc
Confidence 3456655 4443 455 77777788888874 54 56665 457778888888888877 66554 4567788
Q ss_pred CCcEEecCCCccccccCccccCCCCCCEEeCCCC
Q 039167 611 NLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECT 644 (923)
Q Consensus 611 ~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~ 644 (923)
+|++|+|++|. +..+|..+....+|++|++.+|
T Consensus 81 ~L~~L~l~~N~-l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 81 RLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp CCCEEECCSSC-CSCCCSTTTCSCCCCEEECCSS
T ss_pred CCCEEeCCCCc-cceeCHHHcccCCceEEEeeCC
Confidence 88888888776 6777766544444788887776
No 167
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.29 E-value=1.5e-06 Score=94.32 Aligned_cols=91 Identities=18% Similarity=0.122 Sum_probs=58.7
Q ss_pred cccccccccCCCCCcEEeccC-CCCccccc-hhhhCCCCCcEEecCCCccccccC-ccccCCCCCCEEeCCCCcccccCC
Q 039167 575 IKEVPTNIEKLLHLKYLNLAN-QMEIERLP-ETLCELYNLEHLNVNCCVKLRELP-QGIGRLRKLMYLDNECTVSLRYLP 651 (923)
Q Consensus 575 ~~~lp~~i~~l~~L~~L~L~~-~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p 651 (923)
+..+|. +..+.+|++|+|++ |. +..+| ..++.|++|++|+|++|. +..+| ..+..|++|++|+|++| .+..+|
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~ 96 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFN-ALESLS 96 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSS-CCSCCC
T ss_pred CCccCC-CCCCCCeeEEEccCCCC-CCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCC-ccceeC
Confidence 666777 77777777777775 65 66665 457777777777777776 55544 34677777777777776 455666
Q ss_pred cCCCCCCCCCcCCceEec
Q 039167 652 VGIGKLIRLRRVKEFVVG 669 (923)
Q Consensus 652 ~~i~~L~~L~~L~~~~~~ 669 (923)
..+.....|+.|.+..+.
T Consensus 97 ~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 97 WKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp STTTCSCCCCEEECCSSC
T ss_pred HHHcccCCceEEEeeCCC
Confidence 554333336666555443
No 168
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.29 E-value=1.1e-05 Score=89.73 Aligned_cols=160 Identities=13% Similarity=0.112 Sum_probs=96.5
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCcccccccc--eEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhc
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDVEKNFE--KRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVA 281 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (923)
...+.|+|++|+||||||+.+++. ....+. .+++++. ..+...+...+... . ...+.+.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~------~~~~~~~~~~~~~~-----~----~~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----K----LNEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEH------HHHHHHHHHHHHTT-----C----HHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHcc-----c----HHHHHHHhc
Confidence 667999999999999999999983 433332 2344433 23344444444321 1 112333444
Q ss_pred CCceEEEecCCCCCCh--hhHHHhHHhhhc-CCCCcEEEEEecch---------HHHHHhcccceEeCCCCChHHHHHHH
Q 039167 282 GKKLLLVLDDVWNENF--HKWEQFNNCLKN-CLYGSKILITTRKE---------AVARIMGSTNIISVNVLSGMECWLVF 349 (923)
Q Consensus 282 ~kr~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 349 (923)
.+.-+|+|||++.... ...+.+...+.. ...|..||+||.+. .+...+....++.+++++.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 4678999999965332 223334444432 23467899988862 23333443468899999999999999
Q ss_pred HHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHH
Q 039167 350 ESLAFVGKSMEERENLEKIGREITRKCKGLPLATK 384 (923)
Q Consensus 350 ~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 384 (923)
.+.+...+- ..++ +....|++.++|.+-.+.
T Consensus 273 ~~~~~~~~~-~i~~---e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 273 RKMLEIEHG-ELPE---EVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HHHHHHHTC-CCCT---THHHHHHHHCCSCHHHHH
T ss_pred HHHHHHcCC-CCCH---HHHHHHHHhcCCCHHHHH
Confidence 877632111 1111 235678888899876554
No 169
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.24 E-value=4.3e-05 Score=84.01 Aligned_cols=260 Identities=13% Similarity=0.130 Sum_probs=138.4
Q ss_pred cCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccc-cccCCCCCcEEeccCCCCccccc-hhhh
Q 039167 530 LRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPT-NIEKLLHLKYLNLANQMEIERLP-ETLC 607 (923)
Q Consensus 530 ~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~~l~~lp-~~i~ 607 (923)
+..++.+.+... +..+ ....|.++ .|+.+.+..+ +..++. .+.+ .+|+.+.+..+ +..++ ..+.
T Consensus 112 ~~~l~~i~ip~~-i~~I-~~~aF~~~-~L~~i~l~~~--------i~~I~~~aF~~-~~L~~i~lp~~--l~~I~~~aF~ 177 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSI-PKDAFRNS-QIAKVVLNEG--------LKSIGDMAFFN-STVQEIVFPST--LEQLKEDIFY 177 (401)
T ss_dssp CSSCSEEECCTT-CCEE-CTTTTTTC-CCSEEECCTT--------CCEECTTTTTT-CCCCEEECCTT--CCEECSSTTT
T ss_pred cCCccEEEECCc-cCEe-hHhhcccC-CccEEEeCCC--------ccEECHHhcCC-CCceEEEeCCC--ccEehHHHhh
Confidence 355555555443 2222 13346554 6888887632 444443 2344 36888888752 66665 4577
Q ss_pred CCCCCcEEecCCCccccccCccccCCCCCCEEeCCCCcccccCC-cCCCCCCCCCcCCceEecccCCcccccccccCCCC
Q 039167 608 ELYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECTVSLRYLP-VGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLNL 686 (923)
Q Consensus 608 ~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~ 686 (923)
.+.+|+.+++.++. +..+|...-...+|+.+.+..+ +..++ ..+.++++|+.+.+-. .+..++
T Consensus 178 ~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~---------~l~~I~---- 241 (401)
T 4fdw_A 178 YCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPE---------NVSTIG---- 241 (401)
T ss_dssp TCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCT---------TCCEEC----
T ss_pred CcccCCeeecCCCc-ceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCC---------CccCcc----
Confidence 78888888888765 7777776555678888887643 44444 2345566666554311 000000
Q ss_pred CCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCC---CCc
Q 039167 687 LRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKR---NVV 763 (923)
Q Consensus 687 L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~---~~~ 763 (923)
. ..+.. .+|+.+.+..+ +.. --...+..+++|+.+.+.++.... ..+
T Consensus 242 ----------~---------~aF~~-~~L~~i~lp~~-i~~---------I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I 291 (401)
T 4fdw_A 242 ----------Q---------EAFRE-SGITTVKLPNG-VTN---------IASRAFYYCPELAEVTTYGSTFNDDPEAMI 291 (401)
T ss_dssp ----------T---------TTTTT-CCCSEEEEETT-CCE---------ECTTTTTTCTTCCEEEEESSCCCCCTTCEE
T ss_pred ----------c---------ccccc-CCccEEEeCCC-ccE---------EChhHhhCCCCCCEEEeCCccccCCcccEE
Confidence 0 11112 35666666322 100 001245566777777776654330 004
Q ss_pred CcccccccccccEEeEeCCCCCCCCCC--CCCCCCccceeccCCcCceEeCccccCCCCCCCCcccccCcccceeecccc
Q 039167 764 PKNWIMSLTNLRFLGLHEWRNCEHLPP--LGKLPSLESLYIAGMKSVKRVGNEFLGVESDMDGSSVIAFAKLKKLTFYIM 841 (923)
Q Consensus 764 ~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~ 841 (923)
++..|..+++|+.+.|.++ ...++. +.++++|+.+.|..+ ++.++...+. .. +|+.|.+.+.
T Consensus 292 ~~~aF~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~-----------~~-~L~~l~l~~n 355 (401)
T 4fdw_A 292 HPYCLEGCPKLARFEIPES--IRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFN-----------NT-GIKEVKVEGT 355 (401)
T ss_dssp CTTTTTTCTTCCEECCCTT--CCEECTTTTTTCCSCCEEEECTT--CCEECTTSSS-----------SS-CCCEEEECCS
T ss_pred CHHHhhCCccCCeEEeCCc--eEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCC-----------CC-CCCEEEEcCC
Confidence 4556777888888888743 334433 677788888887543 5566543322 33 5666666543
Q ss_pred ccccccccccccccccccCc-ccceeeeccc
Q 039167 842 EELEEWDLGTAIKGEIIIMP-RLSSLTIWSC 871 (923)
Q Consensus 842 ~~L~~~~~~~~~~~~~~~lp-~L~~L~l~~c 871 (923)
.+... .+..+..+| +++.|++-.+
T Consensus 356 -~~~~l-----~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 356 -TPPQV-----FEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp -SCCBC-----CCSSCCCSCTTCCEEEECGG
T ss_pred -CCccc-----ccccccCCCCCccEEEeCHH
Confidence 11111 112233443 5667766554
No 170
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.24 E-value=2.5e-05 Score=86.66 Aligned_cols=178 Identities=18% Similarity=0.166 Sum_probs=101.8
Q ss_pred CceecchhhH---HHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCc-ccHHHHH
Q 039167 177 SEIFGRKDEK---NELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDP-FDEFRIA 252 (923)
Q Consensus 177 ~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~ 252 (923)
.+++|.+..+ ..+...+... ....+.|+|++|+||||+|+.+.+. ....| +.++.. ..... .
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~--~~~~f-----~~l~a~~~~~~~-i 91 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARY--ANADV-----ERISAVTSGVKE-I 91 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHH--TTCEE-----EEEETTTCCHHH-H
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHH--hCCCe-----EEEEeccCCHHH-H
Confidence 4588988877 6677777543 4578999999999999999999983 33332 222211 11211 1
Q ss_pred HHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEE-EecchH--H-HHH
Q 039167 253 RAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILI-TTRKEA--V-ARI 328 (923)
Q Consensus 253 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-TtR~~~--v-~~~ 328 (923)
+.++... ......+++.+|+||++........+.+...+..+ ...+|. ||.+.. + ...
T Consensus 92 r~~~~~a----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 92 REAIERA----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSAL 153 (447)
T ss_dssp HHHHHHH----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHH
T ss_pred HHHHHHH----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHH
Confidence 1221110 11112567899999999776555566666666552 233443 544432 1 112
Q ss_pred hcccceEeCCCCChHHHHHHHHHhhcCCCCc---cchhhHHHHHHHHHHhcCCChHHHHHH
Q 039167 329 MGSTNIISVNVLSGMECWLVFESLAFVGKSM---EERENLEKIGREITRKCKGLPLATKTI 386 (923)
Q Consensus 329 ~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~---~~~~~~~~~~~~i~~~c~GlPLai~~~ 386 (923)
.....++.+.+++.++...++.+.+-..... ....--.+....+++.++|.+-.+..+
T Consensus 154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 2345689999999999999988765321100 001112345677888889987655433
No 171
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.23 E-value=1.6e-05 Score=86.39 Aligned_cols=197 Identities=11% Similarity=0.078 Sum_probs=108.2
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCc---ccc-cccce----------------
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNG---DVE-KNFEK---------------- 236 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~~~-~~F~~---------------- 236 (923)
.+++|.+...+.+..++... ..... +.|+|+.|+||||+|+.+.+.. ... -.++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~----~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 88 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQP----RDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVV 88 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCT----TCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCE
T ss_pred HHhcCCHHHHHHHHHHHhhC----CCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeee
Confidence 45899999888888877222 11233 8999999999999999887621 000 00000
Q ss_pred ----EEEEEeCCcc-cHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCC
Q 039167 237 ----RIWVCVSDPF-DEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCL 311 (923)
Q Consensus 237 ----~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~ 311 (923)
.+.+..+... ......+.+++.+.....- .... .+ ..+.+++-++|+|++..-+......+...+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 89 SSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV----DFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKYS 162 (354)
T ss_dssp ECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHST
T ss_pred cccceEEecHhhcCCcchHHHHHHHHHHHHhccc----cccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhhc
Confidence 1111111100 0000122222222111000 0000 00 0023467799999997766666777777776655
Q ss_pred CCcEEEEEecch-HHHH-HhcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHH
Q 039167 312 YGSKILITTRKE-AVAR-IMGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTIA 387 (923)
Q Consensus 312 ~gs~iivTtR~~-~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 387 (923)
.+..+|++|... .+.. .......+++.+++.++..+.+...+...+..... .+....|++.++|.+-.+..+.
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET---KDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC---SHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHHcCCCHHHHHHHH
Confidence 677888888753 2221 22345789999999999999988765321111110 1346778899999886665443
No 172
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.22 E-value=2.9e-05 Score=84.78 Aligned_cols=197 Identities=13% Similarity=0.097 Sum_probs=105.6
Q ss_pred CceecchhhHHH---HHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEe----CCcccHH
Q 039167 177 SEIFGRKDEKNE---LVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCV----SDPFDEF 249 (923)
Q Consensus 177 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~----s~~~~~~ 249 (923)
.+++|++..++. +.+.+.... ...+.+.|+|++|+|||++|+.+.+. ...... .+.+.. +......
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~--l~~~~~-~~~~~~~~~~~~~~~~~ 116 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQA--LGPDTP-FTAIAGSEIFSLEMSKT 116 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHH--HCSSCC-EEEEEGGGGSCSSSCHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHH--hcccCC-cccccchhhhhcccchh
Confidence 469999988766 444454321 13468999999999999999999884 322111 112221 1222333
Q ss_pred HHHHHHHHHHhC---------------------CC-------CC--CcCHHHHHHHHHHHh-----cCC----ceEEEec
Q 039167 250 RIARAIIEALTG---------------------CL-------PN--FVEFQSLMQHIQKHV-----AGK----KLLLVLD 290 (923)
Q Consensus 250 ~~~~~i~~~l~~---------------------~~-------~~--~~~~~~~~~~l~~~l-----~~k----r~LlVlD 290 (923)
..+...+..... .. .. ..........+.+.. .++ +.+|+||
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~ID 196 (368)
T 3uk6_A 117 EALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFID 196 (368)
T ss_dssp HHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEE
T ss_pred HHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEh
Confidence 333333332110 00 00 000122222222221 233 3599999
Q ss_pred CCCCCChhhHHHhHHhhhcCCCCcEEEEEecc-------------hHH-HHHhcccceEeCCCCChHHHHHHHHHhhcCC
Q 039167 291 DVWNENFHKWEQFNNCLKNCLYGSKILITTRK-------------EAV-ARIMGSTNIISVNVLSGMECWLVFESLAFVG 356 (923)
Q Consensus 291 dv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-------------~~v-~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~ 356 (923)
++..........+...+...... .++++|.. ..+ .........+.+.+++.++..+++...+-..
T Consensus 197 Ei~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~ 275 (368)
T 3uk6_A 197 EVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEE 275 (368)
T ss_dssp SGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred hccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHc
Confidence 99766656666666666554433 34444431 111 1112234568999999999999998766432
Q ss_pred CCccchhhHHHHHHHHHHhcC-CChHHHHH
Q 039167 357 KSMEERENLEKIGREITRKCK-GLPLATKT 385 (923)
Q Consensus 357 ~~~~~~~~~~~~~~~i~~~c~-GlPLai~~ 385 (923)
..... .+....|++.+. |.|-.+..
T Consensus 276 ~~~~~----~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 276 DVEMS----EDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp TCCBC----HHHHHHHHHHHHHSCHHHHHH
T ss_pred CCCCC----HHHHHHHHHHhcCCCHHHHHH
Confidence 22111 234667788887 77755543
No 173
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.21 E-value=7.8e-08 Score=104.86 Aligned_cols=110 Identities=21% Similarity=0.229 Sum_probs=51.8
Q ss_pred CCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccccc-cCCCCCcEEeccCCCCccc-----cch
Q 039167 531 RGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNI-EKLLHLKYLNLANQMEIER-----LPE 604 (923)
Q Consensus 531 ~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i-~~l~~L~~L~L~~~~~l~~-----lp~ 604 (923)
++|+.|++++|.+....+......+++|+.|+|++|.. .......+...+ ....+|++|+|++|. ++. ++.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l--~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~ 177 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSL--GPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLME 177 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCC--CHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCC--CHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHH
Confidence 45666666666543322222223344556666665541 111111222222 124456666666665 432 344
Q ss_pred hhhCCCCCcEEecCCCccccc-----cCccccCCCCCCEEeCCCC
Q 039167 605 TLCELYNLEHLNVNCCVKLRE-----LPQGIGRLRKLMYLDNECT 644 (923)
Q Consensus 605 ~i~~L~~L~~L~L~~~~~l~~-----lp~~i~~L~~L~~L~l~~~ 644 (923)
.+..+++|++|+|++|. +.. ++..+...++|++|++++|
T Consensus 178 ~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 178 GLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp HHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred HHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence 44555666666666654 332 2334445556666666655
No 174
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.19 E-value=1.2e-05 Score=84.44 Aligned_cols=184 Identities=17% Similarity=0.102 Sum_probs=100.2
Q ss_pred CceecchhhHHHHHHHHhcCCCC-------CCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSI-------EQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEF 249 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 249 (923)
.+++|.++.++++.+.+...-.. .-...+.+.|+|++|+|||+||+.+++. ....| +.+..+.-..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~~---~~v~~~~~~~-- 89 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNATF---IRVVGSELVK-- 89 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCEE---EEEEGGGGCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehHHHHH--
Confidence 46899999999998877432000 0123456899999999999999999883 32222 2222221110
Q ss_pred HHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCC-----------ChhhHHHhHHhhh-----cCCCC
Q 039167 250 RIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE-----------NFHKWEQFNNCLK-----NCLYG 313 (923)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~~~l~~~l~-----~~~~g 313 (923)
.. ...........+......++.+|+|||+..- +......+...+. ....+
T Consensus 90 ------------~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 156 (285)
T 3h4m_A 90 ------------KF-IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGD 156 (285)
T ss_dssp ------------CS-TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSS
T ss_pred ------------hc-cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCC
Confidence 00 0001111222233333456689999999321 1111222333332 12235
Q ss_pred cEEEEEecchHHHH-Hh----cccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCC-ChHHHHH
Q 039167 314 SKILITTRKEAVAR-IM----GSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKG-LPLATKT 385 (923)
Q Consensus 314 s~iivTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~ 385 (923)
..||.||...+... .. .-...+.+++.+.++..+++...+..... ..... ...+++.+.| .|-.+..
T Consensus 157 ~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 157 VKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVN----LEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp EEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHHCTTCCHHHHHH
T ss_pred EEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCC----HHHHHHHcCCCCHHHHHH
Confidence 67777887542211 11 11347899999999999999887643221 11112 4566777777 4534443
No 175
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.17 E-value=1.6e-05 Score=85.04 Aligned_cols=178 Identities=16% Similarity=0.134 Sum_probs=103.7
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAII 256 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 256 (923)
.+++|.+..++.+.+++... ....++.+.|++|+|||++|+.+.+. .. ...+.++.+. ... ...+.++
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~-----~~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~-~~~-~~i~~~~ 93 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKG-----KIPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSD-CKI-DFVRGPL 93 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTT-----CCCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTT-CCH-HHHHTHH
T ss_pred HHHhCcHHHHHHHHHHHHcC-----CCCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEcccc-cCH-HHHHHHH
Confidence 46899999999999998643 23467888899999999999999873 22 1234444433 222 2222222
Q ss_pred HHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCC-hhhHHHhHHhhhcCCCCcEEEEEecchH-HHHH-hcccc
Q 039167 257 EALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNEN-FHKWEQFNNCLKNCLYGSKILITTRKEA-VARI-MGSTN 333 (923)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~-~~~~~ 333 (923)
.......+ ..+++-+|++||+.... .+..+.+...+.....+.++|+||.... +... .....
T Consensus 94 ~~~~~~~~---------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~ 158 (324)
T 3u61_B 94 TNFASAAS---------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCR 158 (324)
T ss_dssp HHHHHBCC---------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSE
T ss_pred HHHHhhcc---------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCc
Confidence 21110000 12477899999996654 4455666666654444668888887543 1111 11235
Q ss_pred eEeCCCCChHHHHHHH-------HHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHH
Q 039167 334 IISVNVLSGMECWLVF-------ESLAFVGKSMEERENLEKIGREITRKCKGLPLATK 384 (923)
Q Consensus 334 ~~~l~~L~~~~~~~lf-------~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 384 (923)
++++++++.++-.+++ ...+...+..... .+....|++.++|.+-.+.
T Consensus 159 ~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~---~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 159 VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD---MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC---HHHHHHHHHHTCSCTTHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHhCCCCHHHHH
Confidence 7999999988743332 2222111111111 1456778888988765443
No 176
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.14 E-value=4.7e-05 Score=81.59 Aligned_cols=170 Identities=10% Similarity=0.055 Sum_probs=104.5
Q ss_pred hhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccc--------------------cccceEEEEEe
Q 039167 183 KDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVE--------------------KNFEKRIWVCV 242 (923)
Q Consensus 183 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv~~ 242 (923)
++..+.+...+... .-...+.++|+.|+|||++|+.+.+...-. .++| ..++..
T Consensus 8 ~~~~~~l~~~i~~~-----~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~ 81 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-----RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAP 81 (334)
T ss_dssp HHHHHHHHHHHHTT-----CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECC
T ss_pred HHHHHHHHHHHHcC-----CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEec
Confidence 45566677766432 235679999999999999999887631100 0122 122222
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHh-----cCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEE
Q 039167 243 SDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHV-----AGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKIL 317 (923)
Q Consensus 243 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 317 (923)
.. .......++... +.+.+ .+++-++|+|++...+....+.+...+.....++.+|
T Consensus 82 ~~------------------~~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~I 142 (334)
T 1a5t_A 82 EK------------------GKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFF 142 (334)
T ss_dssp CT------------------TCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEE
T ss_pred cc------------------cCCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEE
Confidence 10 001112222222 22222 3567899999997766666777777776666677777
Q ss_pred EEecchH-HHH-HhcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHH
Q 039167 318 ITTRKEA-VAR-IMGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTI 386 (923)
Q Consensus 318 vTtR~~~-v~~-~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 386 (923)
++|.+.+ +.. .......+++.+++.++..+.+.... . .. .+.+..+++.++|.|..+..+
T Consensus 143 l~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~---~--~~----~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 143 LATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV---T--MS----QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp EEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC---C--CC----HHHHHHHHHHTTTCHHHHHHT
T ss_pred EEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc---C--CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 7776542 222 22345689999999999999988765 1 11 123567889999999766543
No 177
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.14 E-value=2.8e-05 Score=80.30 Aligned_cols=187 Identities=13% Similarity=0.095 Sum_probs=97.5
Q ss_pred CceecchhhHHHHHHHHh---cCCCC---CCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHH
Q 039167 177 SEIFGRKDEKNELVDRLI---CENSI---EQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFR 250 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~---~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 250 (923)
.+++|.+..++.+.+++. ..... .....+.+.|+|++|+|||++|+.+++. .... .+.+..+.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~~~~~~~~~~-- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVP---FLAMAGAEFVEV-- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCC---EEEEETTTTSSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEechHHHHhh--
Confidence 458899888777765542 21110 0123456889999999999999999883 3222 233443321110
Q ss_pred HHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCC------------Chh---hHHHhHHhhhcC--CCC
Q 039167 251 IARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE------------NFH---KWEQFNNCLKNC--LYG 313 (923)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~------------~~~---~~~~l~~~l~~~--~~g 313 (923)
............+.......+.+|+|||+..- +.. ....+...+... ..+
T Consensus 79 -------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 145 (262)
T 2qz4_A 79 -------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH 145 (262)
T ss_dssp -------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCC
T ss_pred -------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCC
Confidence 00011112222333333456789999999542 111 112222222221 234
Q ss_pred cEEEEEecchHHH-HHh-c--c-cceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChH-HHHHH
Q 039167 314 SKILITTRKEAVA-RIM-G--S-TNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPL-ATKTI 386 (923)
Q Consensus 314 s~iivTtR~~~v~-~~~-~--~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 386 (923)
..||.||...... ... . . ...+.+...+.++..+++...+...... ... ......+++.+.|.+- .+..+
T Consensus 146 ~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~--~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 146 VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLT-QSS--TFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCC-BTH--HHHHHHHHHTCTTCCHHHHHHH
T ss_pred EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCC-cch--hhHHHHHHHHCCCCCHHHHHHH
Confidence 5666677554321 111 1 2 3578899999999999988765322211 111 1224678888888654 44433
No 178
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.13 E-value=2.2e-05 Score=83.39 Aligned_cols=161 Identities=15% Similarity=0.088 Sum_probs=89.9
Q ss_pred ceecchhhHHHHHHHHhcCC---------CCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccH
Q 039167 178 EIFGRKDEKNELVDRLICEN---------SIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDE 248 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~---------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 248 (923)
.++|.+..++.+.+.+.... -........+.|+|++|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 36788887777776553110 001234557899999999999999988773211111111123333210
Q ss_pred HHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCC---------ChhhHHHhHHhhhcCCCCcEEEEE
Q 039167 249 FRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE---------NFHKWEQFNNCLKNCLYGSKILIT 319 (923)
Q Consensus 249 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivT 319 (923)
.+..... ..........+... +.-+|+||++..- .......+...+.....+..||.|
T Consensus 109 ---------~l~~~~~-g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 ---------DLVGQYI-GHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp ---------GTCCSST-TCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred ---------Hhhhhcc-cccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 0000000 01111122222222 3569999999632 334456666767666667788888
Q ss_pred ecchHHHHHh-------cc-cceEeCCCCChHHHHHHHHHhhc
Q 039167 320 TRKEAVARIM-------GS-TNIISVNVLSGMECWLVFESLAF 354 (923)
Q Consensus 320 tR~~~v~~~~-------~~-~~~~~l~~L~~~~~~~lf~~~a~ 354 (923)
|......... .. ...+.+++++.++..+++...+.
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 8654321110 11 36889999999999999877653
No 179
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.09 E-value=2.1e-07 Score=100.56 Aligned_cols=143 Identities=21% Similarity=0.114 Sum_probs=80.4
Q ss_pred cCCCCCCCCcEEEeeecCCCCCcCcccccccccccEEeEeCCCCCCC-CCCC--CCCCCccceeccCCcCceEeCcc-cc
Q 039167 741 ALGPPPNLKELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRNCEH-LPPL--GKLPSLESLYIAGMKSVKRVGNE-FL 816 (923)
Q Consensus 741 ~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~-l~~l--~~L~~L~~L~L~~~~~l~~~~~~-~~ 816 (923)
.+.++|+|++|.|.++.+.. +++ + .+++|+.|+|..|..... +..+ ..+|+|++|+|+.+.... .+.. +.
T Consensus 167 ll~~~P~L~~L~L~g~~~l~--l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~-~~~~~~~ 240 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLS--IGK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDY-GFDGDMN 240 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCB--CCS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGG-TCCSCGG
T ss_pred HHhcCCCCcEEEEeCCCCce--ecc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEecccccc-ccchhHH
Confidence 34567889999988875444 423 3 378899999887753221 1122 368888888885321100 0000 00
Q ss_pred CCCCCCCCcccccCcccceeeccccccccccccccccccccccCcccceeeecccccCCC-----CCcCCCCCCCccEEE
Q 039167 817 GVESDMDGSSVIAFAKLKKLTFYIMEELEEWDLGTAIKGEIIIMPRLSSLTIWSCRKLKA-----LPDHLLQKSTLQKLE 891 (923)
Q Consensus 817 ~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~-----lp~~l~~l~sL~~L~ 891 (923)
.... ......||+|+.|.+.+|. +..-.. ..+ .....+|+|+.|+|+.|. +.. ++.++.++++|+.|+
T Consensus 241 ~l~~---~l~~~~~p~Lr~L~L~~~~-i~~~~~-~~l-a~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~ 313 (362)
T 2ra8_A 241 VFRP---LFSKDRFPNLKWLGIVDAE-EQNVVV-EMF-LESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFIN 313 (362)
T ss_dssp GTGG---GSCTTTCTTCCEEEEESCT-THHHHH-HHH-HHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEE
T ss_pred HHHH---HHhcCCCCCcCEEeCCCCC-CchHHH-HHH-HhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEE
Confidence 0000 0011358899999887652 221000 000 011358899999998875 443 455566788899999
Q ss_pred eccCCc
Q 039167 892 IWGGCH 897 (923)
Q Consensus 892 l~~~c~ 897 (923)
+ ++|.
T Consensus 314 L-~~n~ 318 (362)
T 2ra8_A 314 M-KYNY 318 (362)
T ss_dssp C-CSBB
T ss_pred C-CCCc
Confidence 9 6664
No 180
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.04 E-value=1.8e-05 Score=90.34 Aligned_cols=195 Identities=13% Similarity=0.138 Sum_probs=108.0
Q ss_pred CceecchhhHHHHHHHHhcCCC-----------CCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCc
Q 039167 177 SEIFGRKDEKNELVDRLICENS-----------IEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDP 245 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~-----------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 245 (923)
.+++|++..++++.+++..... ......+.+.|+|++|+||||+|+.+++. . .+ ..+.++.+..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~--l--~~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE--L--GY-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH--T--TC-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH--c--CC-CEEEEeCCCc
Confidence 4699999999999999864110 00113468999999999999999999884 2 12 2334444443
Q ss_pred ccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHH--HhcCCceEEEecCCCCCCh---hhHHHhHHhhhcCCCCcEEEEEe
Q 039167 246 FDEFRIARAIIEALTGCLPNFVEFQSLMQHIQK--HVAGKKLLLVLDDVWNENF---HKWEQFNNCLKNCLYGSKILITT 320 (923)
Q Consensus 246 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~--~l~~kr~LlVlDdv~~~~~---~~~~~l~~~l~~~~~gs~iivTt 320 (923)
.... +....+....... ..........+ ...+++.+|++|++..... ..+..+...+... +..||+++
T Consensus 114 ~~~~-~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~ 186 (516)
T 1sxj_A 114 RSKT-LLNAGVKNALDNM----SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILIC 186 (516)
T ss_dssp CCHH-HHHHTGGGGTTBC----CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEE
T ss_pred chHH-HHHHHHHHHhccc----cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEE
Confidence 3322 2222222111100 00000000000 1235778999999954322 2235555555443 23455555
Q ss_pred cchH---HHHHhcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCC-ChHHHHHHH
Q 039167 321 RKEA---VARIMGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKG-LPLATKTIA 387 (923)
Q Consensus 321 R~~~---v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~~~ 387 (923)
.... +.........+++.+++.++..+.+...+...+....+ +....|++.++| ++-++..+.
T Consensus 187 ~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~----~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 187 NERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP----NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp SCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT----THHHHHHHHTTTCHHHHHHHHT
T ss_pred cCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHcCCcHHHHHHHHH
Confidence 4322 22212234579999999999998887765322211111 236678888999 455555553
No 181
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.04 E-value=1.1e-05 Score=74.74 Aligned_cols=114 Identities=17% Similarity=0.078 Sum_probs=69.3
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHH
Q 039167 178 EIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIE 257 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 257 (923)
+++|+...+.++.+.+..-.. ...-|.|+|.+|+|||++|+.+++.... .... .+ ++.+...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~~~-~~~~-~v-~~~~~~~~~--------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFGRN-AQGE-FV-YRELTPDNA--------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSSTT-TTSC-CE-EEECCTTTS---------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhCCc-cCCC-EE-EECCCCCcc---------
Confidence 578999999999887754321 2334789999999999999999884211 1111 22 555432221
Q ss_pred HHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecc
Q 039167 258 ALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRK 322 (923)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~ 322 (923)
... ...+.. .+.-.|+||++..-.......+...+.......+||.||..
T Consensus 66 ---------~~~---~~~~~~---a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ---------PQL---NDFIAL---AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ---------SCH---HHHHHH---HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ---------hhh---hcHHHH---cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 011 111111 13457899999776655566666666555556678887764
No 182
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.02 E-value=8.2e-05 Score=80.06 Aligned_cols=174 Identities=10% Similarity=0.061 Sum_probs=104.3
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccc-eEEEEEeCCcccHHHHHHHHH
Q 039167 178 EIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFE-KRIWVCVSDPFDEFRIARAII 256 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~ 256 (923)
.++|.+..++.+...+... ....+.++|+.|+||||+|+.+.+... ...+. ...-++.+.....
T Consensus 26 ~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~-------- 90 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGI-------- 90 (340)
T ss_dssp GCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSH--------
T ss_pred HhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccH--------
Confidence 4789888888888887543 222389999999999999999987311 11111 1122222221121
Q ss_pred HHHhCCCCCCcCHHHHHHHHHHHh------cCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecchH-HHH-H
Q 039167 257 EALTGCLPNFVEFQSLMQHIQKHV------AGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRKEA-VAR-I 328 (923)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~l~~~l------~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~-~ 328 (923)
+.....+.... .+.+-++|+|++........+.+...+.......++|++|.... +.. .
T Consensus 91 -------------~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i 157 (340)
T 1sxj_C 91 -------------DVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPAL 157 (340)
T ss_dssp -------------HHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred -------------HHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhH
Confidence 12222222211 23467899999966555666777777766555677777775432 111 1
Q ss_pred hcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHH
Q 039167 329 MGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLAT 383 (923)
Q Consensus 329 ~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 383 (923)
......+++.+++.++..+.+...+-...-... .+..+.|++.++|.+--+
T Consensus 158 ~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~----~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 158 LSQCTRFRFQPLPQEAIERRIANVLVHEKLKLS----PNAEKALIELSNGDMRRV 208 (340)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBC----HHHHHHHHHHHTTCHHHH
T ss_pred HhhceeEeccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 123457899999999988888765522111111 234677888889987644
No 183
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.01 E-value=0.00016 Score=77.15 Aligned_cols=156 Identities=17% Similarity=0.128 Sum_probs=87.7
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAG 282 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 282 (923)
....+.|+|++|+||||||+.+++. ....-...++++. ..+...+...+... ... .+.+.+ .
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~------~~~~~~~~~~~~~~-----~~~----~~~~~~-~ 97 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSA------DDFAQAMVEHLKKG-----TIN----EFRNMY-K 97 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEH------HHHHHHHHHHHHHT-----CHH----HHHHHH-H
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEH------HHHHHHHHHHHHcC-----cHH----HHHHHh-c
Confidence 3457899999999999999999884 2211112344433 23333443333211 111 122222 2
Q ss_pred CceEEEecCCCCCCh--hhHHHhHHhhhc-CCCCcEEEEEecch---------HHHHHhcccceEeCCCCChHHHHHHHH
Q 039167 283 KKLLLVLDDVWNENF--HKWEQFNNCLKN-CLYGSKILITTRKE---------AVARIMGSTNIISVNVLSGMECWLVFE 350 (923)
Q Consensus 283 kr~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 350 (923)
+.-+|++||+..... ...+.+...+.. ...|..||+||... .+...+....++++++ +.++..+++.
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~ 176 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIK 176 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHH
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHH
Confidence 367999999955322 122334444322 12356788887632 2233333346799999 9999999998
Q ss_pred HhhcCCCCccchhhHHHHHHHHHHhcCCChHH
Q 039167 351 SLAFVGKSMEERENLEKIGREITRKCKGLPLA 382 (923)
Q Consensus 351 ~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 382 (923)
..+...... .+ .+....|++.+ |..-.
T Consensus 177 ~~~~~~~~~-l~---~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 177 EKLKEFNLE-LR---KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHHTTCC-CC---HHHHHHHHHHC-SSHHH
T ss_pred HHHHhcCCC-CC---HHHHHHHHHhC-CCHHH
Confidence 876422211 11 23466778888 76543
No 184
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.01 E-value=1.4e-05 Score=77.61 Aligned_cols=45 Identities=22% Similarity=0.265 Sum_probs=37.9
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcC
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
..++||+.+++.+.+.+... ....+.|+|++|+|||++|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999998542 3456789999999999999999873
No 185
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.00 E-value=5.3e-05 Score=78.70 Aligned_cols=171 Identities=19% Similarity=0.184 Sum_probs=90.3
Q ss_pred CceecchhhHHHHHH-------HHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHH
Q 039167 177 SEIFGRKDEKNELVD-------RLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEF 249 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~-------~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 249 (923)
..++|....+++++. .+... .....+.+.|+|++|+|||++|+.+++. ....| +.+..+...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~---~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~~---~~i~~~~~~--- 101 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNS---DRTPLVSVLLEGPPHSGKTALAAKIAEE--SNFPF---IKICSPDKM--- 101 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHC---SSCSEEEEEEECSTTSSHHHHHHHHHHH--HTCSE---EEEECGGGC---
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhcc---CCCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEeCHHHh---
Confidence 357787777666655 33211 1235678999999999999999999883 22221 222222110
Q ss_pred HHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCC----------ChhhHHHhHHhhhc---CCCCcEE
Q 039167 250 RIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE----------NFHKWEQFNNCLKN---CLYGSKI 316 (923)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~----------~~~~~~~l~~~l~~---~~~gs~i 316 (923)
.+. ............+......+..+|+|||+... .......+...+.. .+....|
T Consensus 102 ----------~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 102 ----------IGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp ----------TTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred ----------cCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 000 00000112222333344567899999998321 11112333333332 1223446
Q ss_pred EEEecchHHHHH---hcc-cceEeCCCCCh-HHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCC
Q 039167 317 LITTRKEAVARI---MGS-TNIISVNVLSG-MECWLVFESLAFVGKSMEERENLEKIGREITRKCKG 378 (923)
Q Consensus 317 ivTtR~~~v~~~---~~~-~~~~~l~~L~~-~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G 378 (923)
|.||........ .+. ...+.+++++. ++...++.+.. . .. .+....|++.+.|
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~--~~----~~~~~~l~~~~~g 228 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---N--FK----DKERTTIAQQVKG 228 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---C--SC----HHHHHHHHHHHTT
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC---C--CC----HHHHHHHHHHhcC
Confidence 777776654433 122 45788999988 66666665531 1 11 2235667777777
No 186
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.98 E-value=6.8e-05 Score=82.67 Aligned_cols=305 Identities=13% Similarity=0.039 Sum_probs=143.4
Q ss_pred ccccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCccccccccccc-ccccCCCCCcEEeccCCCCccccc
Q 039167 525 DNIEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVP-TNIEKLLHLKYLNLANQMEIERLP 603 (923)
Q Consensus 525 ~~~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~l~~lp 603 (923)
..|..+.+|+++.+..+ +..+. ...|.+|..|+.+++..+ +..++ ..+..+..|+.+.+..+ +..++
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~~I~-~~aF~~c~~L~~i~lp~~--------l~~I~~~aF~~c~~L~~i~~p~~--l~~i~ 132 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VREIG-EFAFENCSKLEIINIPDS--------VKMIGRCTFSGCYALKSILLPLM--LKSIG 132 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CCEEC-TTTTTTCTTCCEECCCTT--------CCEECTTTTTTCTTCCCCCCCTT--CCEEC
T ss_pred HHhhCCCCceEEEeCCC-ccCcc-hhHhhCCCCCcEEEeCCC--------ceEccchhhcccccchhhcccCc--eeeec
Confidence 45777888888888643 33322 445788888888888632 33343 23556666766665443 33332
Q ss_pred -hhhhCCCCCcEEecCCCccccccC-ccccCCCCCCEEeCCCCcccccCC-cCCCCCCCCCcCCceEecccCCccccccc
Q 039167 604 -ETLCELYNLEHLNVNCCVKLRELP-QGIGRLRKLMYLDNECTVSLRYLP-VGIGKLIRLRRVKEFVVGGGYGRACSLGS 680 (923)
Q Consensus 604 -~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~l~~ 680 (923)
..+..+..+........ ..+. ..+..+.+|+.+.+..+ +..++ ..+..+++|+.+.+-.. ........+..
T Consensus 133 ~~aF~~~~~~~~~~~~~~---~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~ 206 (394)
T 4fs7_A 133 VEAFKGCDFKEITIPEGV---TVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAE 206 (394)
T ss_dssp TTTTTTCCCSEEECCTTC---CEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTT
T ss_pred ceeeecccccccccCccc---cccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-ceEeCchhhcc
Confidence 22333333333222221 1221 23556667777776543 22333 23445566665543211 00000112222
Q ss_pred ccCCCCCCCceEeCCCCCCChhhhHHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCC
Q 039167 681 LKKLNLLRDCRIRGLGDVSDVDEARRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKR 760 (923)
Q Consensus 681 L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~ 760 (923)
+..|..+.. .. .... .......+..|+.+.+..... . --...+..+.+|+.+.+..+...
T Consensus 207 ~~~L~~i~~---~~--~~~~----i~~~~~~~~~l~~i~ip~~~~-~---------i~~~~f~~~~~l~~~~~~~~~~~- 266 (394)
T 4fs7_A 207 CILLENMEF---PN--SLYY----LGDFALSKTGVKNIIIPDSFT-E---------LGKSVFYGCTDLESISIQNNKLR- 266 (394)
T ss_dssp CTTCCBCCC---CT--TCCE----ECTTTTTTCCCCEEEECTTCC-E---------ECSSTTTTCSSCCEEEECCTTCE-
T ss_pred ccccceeec---CC--CceE----eehhhcccCCCceEEECCCce-e---------cccccccccccceeEEcCCCcce-
Confidence 222222211 10 0000 001112345566666642210 0 00112345566777776544322
Q ss_pred CCcCcccccccccccEEeEeCCCCCCCCCCCCCCCCccceeccCCcCceEeCccccCCCCCCCCcccccCcccceeeccc
Q 039167 761 NVVPKNWIMSLTNLRFLGLHEWRNCEHLPPLGKLPSLESLYIAGMKSVKRVGNEFLGVESDMDGSSVIAFAKLKKLTFYI 840 (923)
Q Consensus 761 ~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~ 840 (923)
+....+..+..++.+.+...... -..+..+.+|+.+.+.+ +++.++...+. .+.+|+.+.+-.
T Consensus 267 --i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~--~i~~I~~~aF~-----------~c~~L~~i~lp~ 329 (394)
T 4fs7_A 267 --IGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLD--SVKFIGEEAFE-----------SCTSLVSIDLPY 329 (394)
T ss_dssp --ECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECT--TCCEECTTTTT-----------TCTTCCEECCCT
T ss_pred --eeccccccccccceeccCceeec--ccccccccccccccccc--ccceechhhhc-----------CCCCCCEEEeCC
Confidence 32444556667777666543211 11255667777777653 25555543221 334555555431
Q ss_pred cccccccccccccccccccCcccceeeecccccCCCCCc-CCCCCCCccEEEec
Q 039167 841 MEELEEWDLGTAIKGEIIIMPRLSSLTIWSCRKLKALPD-HLLQKSTLQKLEIW 893 (923)
Q Consensus 841 ~~~L~~~~~~~~~~~~~~~lp~L~~L~l~~c~~l~~lp~-~l~~l~sL~~L~l~ 893 (923)
+++.+. ...+..+.+|+.+.|..+ ++.++. .+.++++|+.+++.
T Consensus 330 --~v~~I~-----~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 330 --LVEEIG-----KRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp --TCCEEC-----TTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEE
T ss_pred --cccEEh-----HHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEEC
Confidence 122111 123556677777777554 444443 46677777777773
No 187
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.94 E-value=0.00018 Score=76.56 Aligned_cols=186 Identities=16% Similarity=0.074 Sum_probs=101.4
Q ss_pred CceecchhhHHHHHHHHhcC---C---CCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHH
Q 039167 177 SEIFGRKDEKNELVDRLICE---N---SIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFR 250 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~---~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 250 (923)
.+++|.++.++.|.+.+... + .......+-+.++|++|+|||+||+++++. ....| +.++.+ .
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~---~~v~~~------~ 86 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS------D 86 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCEE---EEEEHH------H
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCCE---EEEchH------H
Confidence 46899999999998877210 0 001223467899999999999999999883 33222 222221 1
Q ss_pred HHHHHHHHHhCCCCCCcCHHHHHHH-HHHHhcCCceEEEecCCCCCCh-----------hhHHHhHHhhhc---CCCCcE
Q 039167 251 IARAIIEALTGCLPNFVEFQSLMQH-IQKHVAGKKLLLVLDDVWNENF-----------HKWEQFNNCLKN---CLYGSK 315 (923)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~-l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~~---~~~gs~ 315 (923)
+. .. .....+..... +...-..++.+|+||++..-.. .....+...+.. ...+..
T Consensus 87 l~--------~~--~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 156 (322)
T 3eie_A 87 LV--------SK--WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 156 (322)
T ss_dssp HH--------TT--TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEE
T ss_pred Hh--------hc--ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceE
Confidence 10 00 00111222222 2223345678999999943210 112333333332 234556
Q ss_pred EEEEecchHH-HHHh--cccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCC-ChHHHHHHH
Q 039167 316 ILITTRKEAV-ARIM--GSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKG-LPLATKTIA 387 (923)
Q Consensus 316 iivTtR~~~v-~~~~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~~~ 387 (923)
||.||..... ...+ .-...+.+...+.++-.+++...+......... .....|++.+.| .+-.|..+.
T Consensus 157 vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~----~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 157 VLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTK----EDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCH----HHHHHHHHTTTTCCHHHHHHHH
T ss_pred EEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCH----HHHHHHHHHcCCCCHHHHHHHH
Confidence 6667765321 1111 123577888899999999998876432221122 235678888887 444444443
No 188
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.90 E-value=0.00013 Score=78.99 Aligned_cols=187 Identities=11% Similarity=0.068 Sum_probs=100.4
Q ss_pred CceecchhhHHHHHHHHhcC---CCC---CCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHH
Q 039167 177 SEIFGRKDEKNELVDRLICE---NSI---EQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFR 250 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~---~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 250 (923)
.+++|.+..++.+.+.+... +.. .....+.|.|+|++|+|||+||+.+++. .... .+.++.+.-...
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~i~~~~l~~~-- 156 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGAT---FFSISASSLTSK-- 156 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTCE---EEEEEGGGGCCS--
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCCe---EEEEehHHhhcc--
Confidence 46899999999988876421 000 0124567899999999999999999873 3222 234443321110
Q ss_pred HHHHHHHHHhCCCCCCcCHHHHH-HHHHHHhcCCceEEEecCCCCC-----------ChhhHHHhHHhhhcC----CCCc
Q 039167 251 IARAIIEALTGCLPNFVEFQSLM-QHIQKHVAGKKLLLVLDDVWNE-----------NFHKWEQFNNCLKNC----LYGS 314 (923)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~-~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~~~l~~~l~~~----~~gs 314 (923)
. ........ ..+...-..++.+|+||++... .......+...+... ..+.
T Consensus 157 ------------~--~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v 222 (357)
T 3d8b_A 157 ------------W--VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRI 222 (357)
T ss_dssp ------------S--TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCE
T ss_pred ------------c--cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCE
Confidence 0 00111111 1222222456789999998321 001122333333321 2244
Q ss_pred EEEEEecchH-HHHHh-cc-cceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCC-ChHHHHHHHH
Q 039167 315 KILITTRKEA-VARIM-GS-TNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKG-LPLATKTIAS 388 (923)
Q Consensus 315 ~iivTtR~~~-v~~~~-~~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~~~~ 388 (923)
.||.||.... +...+ .. ...+.+...+.++..+++...+-....... .+....|++.+.| .+-.+..+..
T Consensus 223 ~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 223 LVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS----EEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5665665432 21111 12 346788888999888888776532211111 2346778888888 5555655543
No 189
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.90 E-value=0.00022 Score=76.89 Aligned_cols=186 Identities=16% Similarity=0.044 Sum_probs=98.6
Q ss_pred CceecchhhHHHHHHHHhcC---CC---CCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHH
Q 039167 177 SEIFGRKDEKNELVDRLICE---NS---IEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFR 250 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~---~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 250 (923)
.+++|.+..++.|.+.+... +. ......+-|.|+|++|+|||+||+.+++. ....| +.+..+ +
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~~---~~v~~~------~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS------D 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCEE---EEEEHH------H
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEeeHH------H
Confidence 35899999999888876311 00 01123346889999999999999999983 32222 222211 1
Q ss_pred HHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCChh-----------hHHHhHHhhhc---CCCCcEE
Q 039167 251 IARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFH-----------KWEQFNNCLKN---CLYGSKI 316 (923)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~-----------~~~~l~~~l~~---~~~gs~i 316 (923)
+. .... ..........+...-..++.+|+||++...... ....+...+.. ...+..|
T Consensus 120 l~--------~~~~-g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 190 (355)
T 2qp9_X 120 LV--------SKWM-GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 190 (355)
T ss_dssp HH--------SCC----CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEE
T ss_pred Hh--------hhhc-chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEE
Confidence 11 1100 011122222222333457889999999532110 12223333322 1235556
Q ss_pred EEEecchH-HHHHh--cccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCC-ChHHHHHH
Q 039167 317 LITTRKEA-VARIM--GSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKG-LPLATKTI 386 (923)
Q Consensus 317 ivTtR~~~-v~~~~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~~ 386 (923)
|.||.... +...+ .-...+.+...+.++-.+++............ ......|++.+.| .+-.|..+
T Consensus 191 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~----~~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 191 LGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT----KEDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp EEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC----HHHHHHHHHHTTTCCHHHHHHH
T ss_pred EeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 66676442 11111 22357788999999999998877643221111 1235678888888 44445444
No 190
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.89 E-value=3.3e-05 Score=74.61 Aligned_cols=121 Identities=19% Similarity=0.196 Sum_probs=65.3
Q ss_pred chhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhC
Q 039167 182 RKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTG 261 (923)
Q Consensus 182 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 261 (923)
....++.+.+++..-. ......+.|+|++|+||||||+.+++.......+ .++++ +..++...+......
T Consensus 19 ~~~~~~~~~~~~~~~~---~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~------~~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFN---PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFF------DTKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSCC---GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEE------EHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc---ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEE------EHHHHHHHHHHHhcC
Confidence 3444555555553321 1234689999999999999999998842212222 22333 344445444444332
Q ss_pred CCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHH--HhHHhhhcC-CCCcEEEEEecc
Q 039167 262 CLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWE--QFNNCLKNC-LYGSKILITTRK 322 (923)
Q Consensus 262 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTtR~ 322 (923)
.... ... +.+. +.-+|||||++....+.|. .+...+... ..|..+|+||..
T Consensus 89 ~~~~-----~~~----~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 89 GKDT-----KFL----KTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp TCCS-----HHH----HHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred chHH-----HHH----HHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 2111 111 1122 5679999999743333343 344444322 246788998874
No 191
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.87 E-value=2.3e-06 Score=92.36 Aligned_cols=65 Identities=12% Similarity=0.029 Sum_probs=33.4
Q ss_pred CCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCC---cCcccccccccccEEeEeCCC
Q 039167 712 KKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNV---VPKNWIMSLTNLRFLGLHEWR 783 (923)
Q Consensus 712 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~---~~p~~~~~l~~L~~L~L~~~~ 783 (923)
+++|+.|.+.+|.+++ .....+.....+++|+.|+|+.|...... + +..+..+++|+.|+|++|.
T Consensus 251 ~p~Lr~L~L~~~~i~~------~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L-~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQN------VVVEMFLESDILPQLETMDISAGVLTDEGARLL-LDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CTTCCEEEEESCTTHH------HHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHH-HTTHHHHTTCSEEECCSBB
T ss_pred CCCcCEEeCCCCCCch------HHHHHHHhCccCCCCCEEECCCCCCChHHHHHH-HhhcccCCcceEEECCCCc
Confidence 4567777776655321 00111111223567777777665533210 1 2223456778888887774
No 192
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.86 E-value=0.00061 Score=71.64 Aligned_cols=183 Identities=15% Similarity=0.069 Sum_probs=97.8
Q ss_pred CceecchhhHHHHHHHHhcCCC------CCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENS------IEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFR 250 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 250 (923)
.+++|.+..++.+.+.+..... ......+.+.|+|++|+||||+|+.+++. .... .+.++.+.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~~---~~~i~~~~l~~--- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSAT---FLNISAASLTS--- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTCE---EEEEESTTTSS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEeeHHHHhh---
Confidence 4689999999998887632100 00113467899999999999999999883 3222 22333332111
Q ss_pred HHHHHHHHHhCCCCCCcCHHHHHH-HHHHHhcCCceEEEecCCCCCC-----------hhhHHHhHHhhhcC-----CCC
Q 039167 251 IARAIIEALTGCLPNFVEFQSLMQ-HIQKHVAGKKLLLVLDDVWNEN-----------FHKWEQFNNCLKNC-----LYG 313 (923)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~-~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~~-----~~g 313 (923)
. .......... .+......++.+|++|++.... ......+...+... +.+
T Consensus 93 -----------~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 159 (297)
T 3b9p_A 93 -----------K--YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDR 159 (297)
T ss_dssp -----------S--SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------C
T ss_pred -----------c--ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCc
Confidence 0 0011122222 2222334567899999994321 00111222222211 124
Q ss_pred cEEEEEecchH-----HHHHhcccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChH-HHHHH
Q 039167 314 SKILITTRKEA-----VARIMGSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPL-ATKTI 386 (923)
Q Consensus 314 s~iivTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 386 (923)
..||.||.... +... -...+.+...+.++...++...+-....... .+....+++.+.|.+- ++..+
T Consensus 160 v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 160 IVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGSPLD----TEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp EEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSCCSC----HHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 45666776532 2222 2346777888888888887765532211111 2345678888888775 44444
No 193
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.86 E-value=0.00064 Score=72.16 Aligned_cols=188 Identities=16% Similarity=0.070 Sum_probs=99.1
Q ss_pred CceecchhhHHHHHHHHhc---CCCC---CCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHH
Q 039167 177 SEIFGRKDEKNELVDRLIC---ENSI---EQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFR 250 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~---~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 250 (923)
.+++|.++.++.|.+.+.. .+.. .....+.|.++|++|+|||+||+++++... ... .+.+..+.-.+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~~---~~~i~~~~l~~--- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NST---FFSISSSDLVS--- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SCE---EEEEECCSSCC---
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CCc---EEEEEhHHHHh---
Confidence 4688999888888776531 1100 112346789999999999999999998320 111 22233332110
Q ss_pred HHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCC-------ChhhH----HHhHHhhhc---CCCCcEE
Q 039167 251 IARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE-------NFHKW----EQFNNCLKN---CLYGSKI 316 (923)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-------~~~~~----~~l~~~l~~---~~~gs~i 316 (923)
. ............+...-..++.+|+||++... ..... ..+...+.. ...+..|
T Consensus 85 -----------~-~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~v 152 (322)
T 1xwi_A 85 -----------K-WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 152 (322)
T ss_dssp -----------S-SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEE
T ss_pred -----------h-hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEE
Confidence 0 00111122222222233467789999999532 00111 122222222 1234556
Q ss_pred EEEecchH-HHHHh--cccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCC-hHHHHHHH
Q 039167 317 LITTRKEA-VARIM--GSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGL-PLATKTIA 387 (923)
Q Consensus 317 ivTtR~~~-v~~~~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~~ 387 (923)
|.||.... +...+ .-...+.+...+.++..+++............ ......|++.+.|. +-.|..+.
T Consensus 153 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 153 LGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT----EADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp EEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC----HHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 65665432 11111 22357888888999888888876532221111 12356788888886 44454443
No 194
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.83 E-value=1.1e-05 Score=78.17 Aligned_cols=114 Identities=14% Similarity=0.113 Sum_probs=74.0
Q ss_pred ccccCCceEEEeCCC-CCCCc---cchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccc-
Q 039167 527 IEALRGLRSLLLEST-KHSSV---ILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIER- 601 (923)
Q Consensus 527 ~~~~~~Lr~L~l~~~-~~~~~---~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~- 601 (923)
+...+.|++|++++| .+... .+...+...+.|++|+|++|. +.......+...+...+.|++|+|++|. +..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~--i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~ 108 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR--SNDPVAFALAEMLKVNNTLKSLNVESNF-ISGS 108 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC--CCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC--CChHHHHHHHHHHHhCCCcCEEECcCCc-CCHH
Confidence 445677888888887 65432 234446667788888888776 1122233344555566778888888887 553
Q ss_pred ----cchhhhCCCCCcEEec--CCCccccc-----cCccccCCCCCCEEeCCCC
Q 039167 602 ----LPETLCELYNLEHLNV--NCCVKLRE-----LPQGIGRLRKLMYLDNECT 644 (923)
Q Consensus 602 ----lp~~i~~L~~L~~L~L--~~~~~l~~-----lp~~i~~L~~L~~L~l~~~ 644 (923)
+...+...++|++|+| ++|. +.. +...+...++|++|++++|
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 4566777778888888 6665 432 3344556677888888777
No 195
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.82 E-value=6e-06 Score=89.91 Aligned_cols=135 Identities=16% Similarity=0.059 Sum_probs=96.3
Q ss_pred cceEEEEEEecCCCCCccc-cccccCCceEEEeCCCCCCCcc---chHHh-hcCCcccEEeccccCCccccccccccccc
Q 039167 507 KKILHLTLAIGCGPMPIYD-NIEALRGLRSLLLESTKHSSVI---LPQLF-DKLTCLRALKLEVHNERLPEDFIKEVPTN 581 (923)
Q Consensus 507 ~~~~~l~l~~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~---l~~~~-~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~ 581 (923)
..++.+.+..+........ -...+++|+.|++++|.+.... +...+ ...+.|++|+|++|. +.......++..
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~--l~~~~~~~l~~~ 178 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP--LTAAGVAVLMEG 178 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC--CHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCC--CChHHHHHHHHH
Confidence 4677777776654211111 2234678999999999876532 22223 357899999999886 222234456677
Q ss_pred ccCCCCCcEEeccCCCCcc-----ccchhhhCCCCCcEEecCCCcccc-----ccCccccCCCCCCEEeCCCCc
Q 039167 582 IEKLLHLKYLNLANQMEIE-----RLPETLCELYNLEHLNVNCCVKLR-----ELPQGIGRLRKLMYLDNECTV 645 (923)
Q Consensus 582 i~~l~~L~~L~L~~~~~l~-----~lp~~i~~L~~L~~L~L~~~~~l~-----~lp~~i~~L~~L~~L~l~~~~ 645 (923)
+..+++|++|+|++|. +. .++..+...++|++|+|++|. +. .++..+...++|++|++++|.
T Consensus 179 L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 7888999999999998 65 346677888999999999997 54 345556678999999999984
No 196
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.80 E-value=2.2e-05 Score=77.49 Aligned_cols=118 Identities=19% Similarity=0.160 Sum_probs=61.2
Q ss_pred hHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCC
Q 039167 185 EKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLP 264 (923)
Q Consensus 185 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 264 (923)
.++.+.+++..... ......+.|+|++|+|||+||+.+++. .......++|++++ .+...+......
T Consensus 37 ~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~--- 103 (202)
T 2w58_A 37 AIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVP------ELFRELKHSLQD--- 103 (202)
T ss_dssp HHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHH------HHHHHHHHC------
T ss_pred HHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhH------HHHHHHHHHhcc---
Confidence 44555556544321 112268899999999999999999984 33333445666543 333333322211
Q ss_pred CCcCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHH--hH-HhhhcC-CCCcEEEEEecc
Q 039167 265 NFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQ--FN-NCLKNC-LYGSKILITTRK 322 (923)
Q Consensus 265 ~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~--l~-~~l~~~-~~gs~iivTtR~ 322 (923)
......... +.. .-+|||||++......|.+ +. ..+... ..+.++|+||..
T Consensus 104 --~~~~~~~~~----~~~-~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 104 --QTMNEKLDY----IKK-VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp --CCCHHHHHH----HHH-SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred --chHHHHHHH----hcC-CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 111222222 222 2499999997644334332 22 223221 235578888874
No 197
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.79 E-value=2.7e-05 Score=71.90 Aligned_cols=111 Identities=12% Similarity=0.132 Sum_probs=64.2
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAII 256 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 256 (923)
-.++|++..++++.+.+..... ...-|.|+|.+|+|||++|+.+++... -|+.+.-..-.....
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~~~--------~~~~~~~~~~~~~~~---- 67 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKNGT--------PWVSPARVEYLIDMP---- 67 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCTTS--------CEECCSSTTHHHHCH----
T ss_pred cCceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC--------CeEEechhhCChHhh----
Confidence 3578999998888887754211 223478999999999999999988421 222222111011110
Q ss_pred HHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcC-CCCcEEEEEecc
Q 039167 257 EALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNC-LYGSKILITTRK 322 (923)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTtR~ 322 (923)
..+.+. .+.-.|+||++.....+....+...+... ..+.+||.||..
T Consensus 68 -----------------~~~~~~--a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 68 -----------------MELLQK--AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp -----------------HHHHHH--TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred -----------------hhHHHh--CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 111111 23457899999776655555566665543 345688888764
No 198
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.79 E-value=0.0002 Score=75.13 Aligned_cols=149 Identities=13% Similarity=-0.015 Sum_probs=94.1
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcc-cccccceEEEEEeCC-cccHHHHHHHHHHH
Q 039167 181 GRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGD-VEKNFEKRIWVCVSD-PFDEFRIARAIIEA 258 (923)
Q Consensus 181 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~ 258 (923)
|-++.++.+...+... ......++|+.|+||||+|+.+.+... ....+....++..+. ...... .+.+++.
T Consensus 1 g~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHH
Confidence 3455667777777432 367899999999999999999976310 111122234444332 222222 2233333
Q ss_pred HhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecch-HHHHHhcccceEeC
Q 039167 259 LTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRKE-AVARIMGSTNIISV 337 (923)
Q Consensus 259 l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~~~l 337 (923)
+.... ..+++-++|+|++...+....+.+...+......+.+|++|.+. .+...+... .+++
T Consensus 74 ~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f 136 (305)
T 2gno_A 74 LNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRV 136 (305)
T ss_dssp HTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEE
T ss_pred Hhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeC
Confidence 32111 12456789999998777777888888887766677777776543 343333334 9999
Q ss_pred CCCChHHHHHHHHHhh
Q 039167 338 NVLSGMECWLVFESLA 353 (923)
Q Consensus 338 ~~L~~~~~~~lf~~~a 353 (923)
.++++++..+.+.+..
T Consensus 137 ~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 137 VVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ECCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999988765
No 199
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.78 E-value=4.4e-06 Score=78.84 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=25.0
Q ss_pred cccceeeecccccCCCC-CcCCCCCCCccEEEeccCCchhhh
Q 039167 861 PRLSSLTIWSCRKLKAL-PDHLLQKSTLQKLEIWGGCHILQE 901 (923)
Q Consensus 861 p~L~~L~l~~c~~l~~l-p~~l~~l~sL~~L~l~~~c~~l~~ 901 (923)
++|++|+|++|++++.- -..+.++++|+.|+| ++||.+++
T Consensus 114 ~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L-~~c~~Itd 154 (176)
T 3e4g_A 114 KSMLEMEIISCGNVTDKGIIALHHFRNLKYLFL-SDLPGVKE 154 (176)
T ss_dssp HHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEE-ESCTTCCC
T ss_pred CCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEEC-CCCCCCCc
Confidence 46777777777765431 012345677777777 77777665
No 200
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.67 E-value=0.0018 Score=69.23 Aligned_cols=177 Identities=16% Similarity=0.173 Sum_probs=94.3
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAII 256 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 256 (923)
..++|.+..++.+...+..... .......+.|+|++|+||||||+.+.+. ....|. .....-....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~~---~~sg~~~~~~-------- 90 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNIH---VTSGPVLVKQ-------- 90 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCEE---EEETTTCCSH--------
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCEE---EEechHhcCH--------
Confidence 3578888777777665532100 0123467899999999999999999883 322221 1111100111
Q ss_pred HHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCC--------C----------CcEEE-
Q 039167 257 EALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCL--------Y----------GSKIL- 317 (923)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~--------~----------gs~ii- 317 (923)
...... ...+ .++-++++|++..-.....+.+...+.... . ...++
T Consensus 91 -------------~~l~~~-~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 91 -------------GDMAAI-LTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp -------------HHHHHH-HHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred -------------HHHHHH-HHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 111111 1112 234577888885443333444433332211 0 11222
Q ss_pred EEecchHHHHHhc-c-cceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHH
Q 039167 318 ITTRKEAVARIMG-S-TNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTI 386 (923)
Q Consensus 318 vTtR~~~v~~~~~-~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 386 (923)
.|++...+...+. . .-.+.+++.+.++-.+++.+.+-...... -.+.+..|++.+.|.|-.+..+
T Consensus 156 at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~----~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEI----EDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCB----CHHHHHHHHHTSTTCHHHHHHH
T ss_pred ecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCc----CHHHHHHHHHhcCCChHHHHHH
Confidence 3444433322221 1 23588999999999999987653211111 1345788999999999755443
No 201
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.67 E-value=0.00075 Score=73.94 Aligned_cols=186 Identities=13% Similarity=0.040 Sum_probs=96.9
Q ss_pred CceecchhhHHHHHHHHhcCCC------CCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENS------IEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFR 250 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 250 (923)
.+++|.+..++.+.+++..... ......+.|.|+|++|+|||+||+.+++. .... .+.++.+.-...
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~~---~~~v~~~~l~~~-- 187 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNAT---FFNISAASLTSK-- 187 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTCE---EEEECSCCC-----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcCc---EEEeeHHHhhcc--
Confidence 4689999999999887732100 00113467899999999999999999873 2222 223332221110
Q ss_pred HHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCC-----------ChhhHHHhHHhhhcC----CCCcE
Q 039167 251 IARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE-----------NFHKWEQFNNCLKNC----LYGSK 315 (923)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~~~l~~~l~~~----~~gs~ 315 (923)
. . ..........+...-.....+|+||++... .......+...+... .....
T Consensus 188 ~------------~-g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~ 254 (389)
T 3vfd_A 188 Y------------V-GEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVL 254 (389)
T ss_dssp -----------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEE
T ss_pred c------------c-chHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEE
Confidence 0 0 001111122222222345679999999421 001111222222211 12345
Q ss_pred EEEEecchH-HHHHh-cc-cceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChH-HHHHH
Q 039167 316 ILITTRKEA-VARIM-GS-TNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPL-ATKTI 386 (923)
Q Consensus 316 iivTtR~~~-v~~~~-~~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 386 (923)
||.||.... +...+ .. ...+.+...+.++..+++...+-....... .+....|++.+.|..- ++..+
T Consensus 255 vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 255 VMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT----QKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp EEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC----HHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 565665432 21111 22 246889999999999998876643222111 2345678888888543 55444
No 202
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.67 E-value=6.2e-06 Score=77.81 Aligned_cols=93 Identities=8% Similarity=-0.005 Sum_probs=69.8
Q ss_pred ccccEEeEeCCCCCC-CCCCCCCCCCccceeccCCcCceEeCccccCCCCCCCCcccccCcccceeeccccccccccccc
Q 039167 772 TNLRFLGLHEWRNCE-HLPPLGKLPSLESLYIAGMKSVKRVGNEFLGVESDMDGSSVIAFAKLKKLTFYIMEELEEWDLG 850 (923)
Q Consensus 772 ~~L~~L~L~~~~~~~-~l~~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~ 850 (923)
.+|+.|+|++|.... .+..+..+++|+.|+|++|..+++.+-...... ....++|+.|.+++|+++++-.+.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~-------~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQL-------ENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTC-------HHHHHHCCEEEEESCTTCCHHHHH
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhc-------ccccCCCCEEEcCCCCcCCHHHHH
Confidence 479999999997433 255578999999999999997766554333210 002358999999999988876553
Q ss_pred cccccccccCcccceeeecccccCCC
Q 039167 851 TAIKGEIIIMPRLSSLTIWSCRKLKA 876 (923)
Q Consensus 851 ~~~~~~~~~lp~L~~L~l~~c~~l~~ 876 (923)
.+..+|+|++|+|++|+.++.
T Consensus 134 -----~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 134 -----ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp -----HGGGCTTCCEEEEESCTTCCC
T ss_pred -----HHhcCCCCCEEECCCCCCCCc
Confidence 245789999999999998764
No 203
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.66 E-value=0.00034 Score=74.15 Aligned_cols=137 Identities=15% Similarity=0.235 Sum_probs=74.0
Q ss_pred ceecchhhHHHHHHHHhcCC---CCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHH
Q 039167 178 EIFGRKDEKNELVDRLICEN---SIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARA 254 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 254 (923)
.++|.+..++.+...+.... .........+.++|++|+|||++|+.+++. ....-...+.+..+....... .
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~~-~-- 92 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKHA-V-- 92 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTTH-H--
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeeccccccccc-H--
Confidence 47788888888877775421 001123468999999999999999999873 222212244555443222111 1
Q ss_pred HHHHHhCCCCCCcCHHHHHHHHHHHh-cCCceEEEecCCCCCChhhHHHhHHhhhcCC-----------CCcEEEEEecc
Q 039167 255 IIEALTGCLPNFVEFQSLMQHIQKHV-AGKKLLLVLDDVWNENFHKWEQFNNCLKNCL-----------YGSKILITTRK 322 (923)
Q Consensus 255 i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~ 322 (923)
..+.+..+....... ...+...+ ....-+++||++..........+...+..+. ....||.||..
T Consensus 93 --~~l~g~~~~~~~~~~-~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~ 169 (311)
T 4fcw_A 93 --SRLIGAPPGYVGYEE-GGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNL 169 (311)
T ss_dssp --HHHHCCCTTSTTTTT-CCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEEST
T ss_pred --HHhcCCCCccccccc-cchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEeccc
Confidence 111111111111000 01122222 2344699999997666666666776665432 13347777765
No 204
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.64 E-value=0.0013 Score=73.28 Aligned_cols=187 Identities=16% Similarity=0.085 Sum_probs=97.3
Q ss_pred CceecchhhHHHHHHHHhcC---CC---CCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHH
Q 039167 177 SEIFGRKDEKNELVDRLICE---NS---IEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFR 250 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~---~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 250 (923)
.+++|.++.++.|.+.+... +. ......+.|.|+|++|+|||+||+.+++. .. ..-++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~--~~----~~~~~~v~~~~---- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--AN----NSTFFSISSSD---- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH--CC----SSEEEEECCC-----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--cC----CCCEEEEeHHH----
Confidence 46899999998888776311 00 00123467899999999999999999983 21 11233333211
Q ss_pred HHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCC-------hhhHHHhHH-hh---hc---CCCCcEE
Q 039167 251 IARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNEN-------FHKWEQFNN-CL---KN---CLYGSKI 316 (923)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------~~~~~~l~~-~l---~~---~~~gs~i 316 (923)
+. ....+. ..... ...+...-..++.+|+||++.... ......+.. .+ .. ...+..|
T Consensus 204 l~----~~~~g~--~~~~~---~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~v 274 (444)
T 2zan_A 204 LV----SKWLGE--SEKLV---KNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 274 (444)
T ss_dssp --------------CCCTH---HHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEE
T ss_pred HH----hhhcch--HHHHH---HHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEE
Confidence 11 000010 01111 112222224567899999995321 011122222 22 21 1235667
Q ss_pred EEEecchHH-HHH-hcc-cceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCC-hHHHHHH
Q 039167 317 LITTRKEAV-ARI-MGS-TNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGL-PLATKTI 386 (923)
Q Consensus 317 ivTtR~~~v-~~~-~~~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~ 386 (923)
|.||..... ... ... ...+.+...+.++...+|............. .....|++.+.|. +-.|..+
T Consensus 275 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~----~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 275 LGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTE----ADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp EEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCH----HHHHHHHHHTTTCCHHHHHHH
T ss_pred EecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCH----HHHHHHHHHcCCCCHHHHHHH
Confidence 767765421 111 112 3477888888888888888765322211111 2356778888884 4444443
No 205
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.64 E-value=0.00089 Score=70.38 Aligned_cols=181 Identities=14% Similarity=0.102 Sum_probs=97.9
Q ss_pred CceecchhhHHHHHHHHhcCC-------CCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHH
Q 039167 177 SEIFGRKDEKNELVDRLICEN-------SIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEF 249 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~-------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 249 (923)
.+++|.++.++++.+++...- ...-...+.+.|+|++|+|||+||+.+++. .... ++.++ ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~-----~i~v~----~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIK----GP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCE-----EEEEC----HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCC-----EEEEE----hH
Confidence 358999988888887764210 000124467899999999999999999983 3222 22222 22
Q ss_pred HHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCC--------------hhhHHHhHHhhhcC--CCC
Q 039167 250 RIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNEN--------------FHKWEQFNNCLKNC--LYG 313 (923)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------------~~~~~~l~~~l~~~--~~g 313 (923)
.+.. ...+.. .......+.......+.+|++|++..-. ......+...+... ..+
T Consensus 84 ~l~~----~~~g~~-----~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 154 (301)
T 3cf0_A 84 ELLT----MWFGES-----EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 154 (301)
T ss_dssp HHHH----HHHTTC-----TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSS
T ss_pred HHHh----hhcCch-----HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 2222 222211 1122233333444567899999994210 01123344444321 235
Q ss_pred cEEEEEecchHHH-HHh-c--c-cceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHH
Q 039167 314 SKILITTRKEAVA-RIM-G--S-TNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLA 382 (923)
Q Consensus 314 s~iivTtR~~~v~-~~~-~--~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 382 (923)
..||.||...+.. ..+ . . ...+.+...+.++-.+++....-.... ..... ...+++.+.|.|=+
T Consensus 155 v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 155 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSSCC----HHHHHHTCSSCCHH
T ss_pred EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-Cccch----HHHHHHHcCCCCHH
Confidence 5677777654322 111 1 2 347889999999888888776532211 11112 23455667666543
No 206
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.63 E-value=0.00025 Score=74.64 Aligned_cols=131 Identities=11% Similarity=0.098 Sum_probs=72.0
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCc-ccccccceEEEEEeCCcccHHHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNG-DVEKNFEKRIWVCVSDPFDEFRIARAI 255 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~F~~~~wv~~s~~~~~~~~~~~i 255 (923)
..++|+...+.++.+.+..-.. ....|.|+|.+|+|||++|+.+++.. +....| +.++.+.-. ..++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~---v~v~~~~~~--~~l~~-- 70 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHACSARSDRPL---VTLNCAALN--ESLLE-- 70 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCC---CEEECSSCC--HHHHH--
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHHhCcccCCCe---EEEeCCCCC--hHHHH--
Confidence 4588999999998887755321 33457899999999999999998731 111222 334444322 22222
Q ss_pred HHHHhCCCCCCcCHH--HHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCC-----------CCcEEEEEecc
Q 039167 256 IEALTGCLPNFVEFQ--SLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCL-----------YGSKILITTRK 322 (923)
Q Consensus 256 ~~~l~~~~~~~~~~~--~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~ 322 (923)
..+.+......... .....+.. ...-.|+||++..........+...+.... ...+||.||..
T Consensus 71 -~~lfg~~~g~~tg~~~~~~g~~~~---a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~ 146 (304)
T 1ojl_A 71 -SELFGHEKGAFTGADKRREGRFVE---ADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHR 146 (304)
T ss_dssp -HHHTCCCSSCCC---CCCCCHHHH---HTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESS
T ss_pred -HHhcCccccccCchhhhhcCHHHh---cCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCc
Confidence 22322211110000 00011111 123579999997766555555666655431 24678888775
No 207
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.62 E-value=0.00023 Score=73.46 Aligned_cols=131 Identities=12% Similarity=0.075 Sum_probs=68.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHH
Q 039167 178 EIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIE 257 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 257 (923)
.++|.+..+.++.+.+..... ....|.|+|.+|+|||++|+.+++.. ...-...+.++.+.-. ..... .
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~~--~~~~~~~~~v~~~~~~--~~~~~---~ 75 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYLS--SRWQGPFISLNCAALN--ENLLD---S 75 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHTS--TTTTSCEEEEEGGGSC--HHHHH---H
T ss_pred cceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhc--CccCCCeEEEecCCCC--hhHHH---H
Confidence 478999998888876654221 22467899999999999999998742 1111123445544321 12211 1
Q ss_pred HHhCCCCCC-cCHHH-HHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcC-----------CCCcEEEEEecc
Q 039167 258 ALTGCLPNF-VEFQS-LMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNC-----------LYGSKILITTRK 322 (923)
Q Consensus 258 ~l~~~~~~~-~~~~~-~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTtR~ 322 (923)
.+.+..... ..... ....+. ....-+|+||++..........+...+..+ ..+.+||.||..
T Consensus 76 ~l~g~~~~~~~g~~~~~~~~l~---~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 76 ELFGHEAGAFTGAQKRHPGRFE---RADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp HHHCCC---------CCCCHHH---HTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred HhcCCcccccccccccccchhh---hcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 222211100 00000 000011 123469999999766555555566655432 124578888875
No 208
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.59 E-value=0.00023 Score=86.41 Aligned_cols=154 Identities=14% Similarity=0.190 Sum_probs=80.6
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCccc---cccc-c-eEEEEEeCCcccHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDV---EKNF-E-KRIWVCVSDPFDEFRI 251 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~F-~-~~~wv~~s~~~~~~~~ 251 (923)
..++||++++.++++.+... ...-+.++|++|+||||+|+.+++...- .... . ..++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~------~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRR------TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCS------SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cccCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----
Confidence 35899999999999998653 2334689999999999999999874210 0001 1 223333321100
Q ss_pred HHHHHHHHhCCCCCCcCHHHHHHHHHHHh-c-CCceEEEecCCCCCC--------hhhHHHhHHhhhcCCCCcEEEEEec
Q 039167 252 ARAIIEALTGCLPNFVEFQSLMQHIQKHV-A-GKKLLLVLDDVWNEN--------FHKWEQFNNCLKNCLYGSKILITTR 321 (923)
Q Consensus 252 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~-~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivTtR 321 (923)
+ .....+.......+.+.+ . +++.+|++|++..-. .+....+...+..+ +..+|.||.
T Consensus 240 ---------g-~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~--~i~~I~at~ 307 (854)
T 1qvr_A 240 ---------G-AKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG--ELRLIGATT 307 (854)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTT--CCCEEEEEC
T ss_pred ---------c-CccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC--CeEEEEecC
Confidence 0 000112222222222222 2 367899999995421 11122344444332 334565555
Q ss_pred chHHHH-----Hh-cccceEeCCCCChHHHHHHHHHh
Q 039167 322 KEAVAR-----IM-GSTNIISVNVLSGMECWLVFESL 352 (923)
Q Consensus 322 ~~~v~~-----~~-~~~~~~~l~~L~~~~~~~lf~~~ 352 (923)
...... .+ .....+.+++++.++..+++...
T Consensus 308 ~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 308 LDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred chHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 433211 11 22346899999999999888643
No 209
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.56 E-value=8.5e-05 Score=68.83 Aligned_cols=87 Identities=15% Similarity=0.058 Sum_probs=51.5
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGK 283 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 283 (923)
-..++|+|+.|+|||||++.+++..... .+ ..+++...+-... .+..+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~~~~~------------------------------~~~~~ 83 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAASMPLT------------------------------DAAFE 83 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTTSCCC------------------------------GGGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHHhhHH------------------------------HHHhC
Confidence 3579999999999999999998843221 11 2556654432211 11234
Q ss_pred ceEEEecCCCCCChhhHHHhHHhhhcC-CCCc-EEEEEecc
Q 039167 284 KLLLVLDDVWNENFHKWEQFNNCLKNC-LYGS-KILITTRK 322 (923)
Q Consensus 284 r~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~iivTtR~ 322 (923)
.-+|||||+.......-+.+...+... ..|. +||+||+.
T Consensus 84 ~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 84 AEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp CSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 678999999654333333344443321 1233 58888874
No 210
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.53 E-value=0.0011 Score=74.20 Aligned_cols=184 Identities=13% Similarity=0.098 Sum_probs=100.1
Q ss_pred CceecchhhHHHHHHHHhcCCC-------CCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHH
Q 039167 177 SEIFGRKDEKNELVDRLICENS-------IEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEF 249 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 249 (923)
.+++|.+..++++.+++...-. ......+-|.|+|++|+|||++|+.+++. ....| +.++.+
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~f---v~vn~~------ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP------ 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSEE---EEEEHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCCE---EEEEch------
Confidence 3589999999998887753200 00123456899999999999999999873 32222 223221
Q ss_pred HHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCC--------C---hhhHHHhHHhhhcC--CCCcEE
Q 039167 250 RIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE--------N---FHKWEQFNNCLKNC--LYGSKI 316 (923)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--------~---~~~~~~l~~~l~~~--~~gs~i 316 (923)
.+. .... ..........+.....+++.+|+||++... . ......+...+... ..+..|
T Consensus 273 ~l~--------~~~~-g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 273 EIM--------SKLA-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp HHH--------TSCT-THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred Hhh--------hhhc-chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 111 1000 111122333344445567789999998210 0 01123344444422 234566
Q ss_pred EEEecchH-HHHHh----cccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCC-hHHHHH
Q 039167 317 LITTRKEA-VARIM----GSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGL-PLATKT 385 (923)
Q Consensus 317 ivTtR~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~ 385 (923)
|.||.... +...+ .-...+.+...+.++-.+++..++-.... ..... ..++++.+.|. +-.+..
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~~----l~~la~~t~g~s~~dL~~ 413 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVD----LEQVANETHGHVGADLAA 413 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTCC----HHHHHHTCTTCCHHHHHH
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchhh----HHHHHHHccCCcHHHHHH
Confidence 66766542 22111 11346889999999999999877532211 11112 34566677774 444443
No 211
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.53 E-value=8.8e-05 Score=75.61 Aligned_cols=82 Identities=23% Similarity=0.264 Sum_probs=48.3
Q ss_pred hcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCccccchhhhCCC--CCcEEecCCCccccccCc--
Q 039167 553 DKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIERLPETLCELY--NLEHLNVNCCVKLRELPQ-- 628 (923)
Q Consensus 553 ~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~L~--~L~~L~L~~~~~l~~lp~-- 628 (923)
.+++.|+.|+|++|. -..+..+|..+..+++|++|+|++|. +..+.. +..+. +|++|+|++|.....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~----l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~-l~~l~~l~L~~L~L~~Npl~~~~~~~~ 240 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR----LYRLDDMSSIVQKAPNLKILNLSGNE-LKSERE-LDKIKGLKLEELWLDGNSLCDTFRDQS 240 (267)
T ss_dssp HHCTTCCEEECTTSC----CCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGG-GGGGTTSCCSEEECTTSTTGGGCSSHH
T ss_pred hhCCCCCEEECCCCC----CCCCccchhHHhhCCCCCEEECCCCc-cCCchh-hhhcccCCcceEEccCCcCccccCcch
Confidence 456677777777665 22333444555667777777777776 655532 44444 677777777662233431
Q ss_pred -----cccCCCCCCEEe
Q 039167 629 -----GIGRLRKLMYLD 640 (923)
Q Consensus 629 -----~i~~L~~L~~L~ 640 (923)
.+..+++|+.||
T Consensus 241 ~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 241 TYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHCTTCCEES
T ss_pred hHHHHHHHHCcccCeEC
Confidence 245667777665
No 212
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.52 E-value=0.00044 Score=77.53 Aligned_cols=145 Identities=17% Similarity=0.217 Sum_probs=79.0
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCccccccc------ce-EEEEEeCCcccHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNF------EK-RIWVCVSDPFDEF 249 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~-~~wv~~s~~~~~~ 249 (923)
..++||+.+++++...+... ...-+.|+|++|+|||++|+.+++. +...+ +. .+.++.+.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~------~~~~~LL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~~----- 246 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRR------TKNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDMGT----- 246 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCS------SSCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC---------
T ss_pred CCccCcHHHHHHHHHHHhcc------CCCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEEeeCCc-----
Confidence 35999999999999999653 2334679999999999999999873 21111 11 11222220
Q ss_pred HHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecchHHHH--
Q 039167 250 RIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRKEAVAR-- 327 (923)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~-- 327 (923)
...+ .. .......+...-..++.+|++|. ..+....+...+..+ ..++|.+|.......
T Consensus 247 --------~~~g---~~--e~~~~~~~~~~~~~~~~iLfiD~----~~~a~~~L~~~L~~g--~v~vI~at~~~e~~~~~ 307 (468)
T 3pxg_A 247 --------KYRG---EF--EDRLKKVMDEIRQAGNIILFIDA----AIDASNILKPSLARG--ELQCIGATTLDEYRKYI 307 (468)
T ss_dssp -------------------CTTHHHHHHHHHTCCCCEEEECC------------CCCTTSS--SCEEEEECCTTTTHHHH
T ss_pred --------cccc---hH--HHHHHHHHHHHHhcCCeEEEEeC----chhHHHHHHHhhcCC--CEEEEecCCHHHHHHHh
Confidence 0000 00 01112223333345678999991 112223333333322 346666665443111
Q ss_pred -----HhcccceEeCCCCChHHHHHHHHHhh
Q 039167 328 -----IMGSTNIISVNVLSGMECWLVFESLA 353 (923)
Q Consensus 328 -----~~~~~~~~~l~~L~~~~~~~lf~~~a 353 (923)
......++.+++.+.++..+++...+
T Consensus 308 ~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 308 EKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp TTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 11234579999999999999998654
No 213
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.51 E-value=0.001 Score=73.06 Aligned_cols=283 Identities=10% Similarity=0.051 Sum_probs=142.7
Q ss_pred hHHhhcCCcccEEeccccCCccccccccccc-ccccCCCCCcEEeccCCCCccccch-hhhCCCCCcEEecCCCcccccc
Q 039167 549 PQLFDKLTCLRALKLEVHNERLPEDFIKEVP-TNIEKLLHLKYLNLANQMEIERLPE-TLCELYNLEHLNVNCCVKLREL 626 (923)
Q Consensus 549 ~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~l 626 (923)
...|.+|.+|+.+.|.. .+..++ ..+.++.+|+.++|..+ +..++. .+..+.+|+.+.+..+ +..+
T Consensus 64 ~~AF~~c~~L~~i~lp~--------~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~--l~~i 131 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPS--------TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM--LKSI 131 (394)
T ss_dssp TTTTTTCTTEEEEECCT--------TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT--CCEE
T ss_pred HHHhhCCCCceEEEeCC--------CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc--eeee
Confidence 34588889999998863 255554 34678889999998755 566653 4667778887776543 4333
Q ss_pred Cc-cccCCCCCCEEeCCCCcccccC-CcCCCCCCCCCcCCceEecccCCcccccccccCCCCCCCceEeCCCCCCChhhh
Q 039167 627 PQ-GIGRLRKLMYLDNECTVSLRYL-PVGIGKLIRLRRVKEFVVGGGYGRACSLGSLKKLNLLRDCRIRGLGDVSDVDEA 704 (923)
Q Consensus 627 p~-~i~~L~~L~~L~l~~~~~l~~~-p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~ 704 (923)
+. .+..+..+........ ..+ ...+..+++|+.+.+-..- .......+..+.+|+.+ .+.. ++...
T Consensus 132 ~~~aF~~~~~~~~~~~~~~---~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i---~l~~--~~~~I--- 199 (394)
T 4fs7_A 132 GVEAFKGCDFKEITIPEGV---TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSI---KLPR--NLKII--- 199 (394)
T ss_dssp CTTTTTTCCCSEEECCTTC---CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBC---CCCT--TCCEE---
T ss_pred cceeeecccccccccCccc---cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEE---EcCC--CceEe---
Confidence 32 2333332222222221 111 1335566666665432100 00001122333333322 2211 11100
Q ss_pred HHhhcCCCCCCCcEEEEEcCCCCCCCccchHHHHhhcCCCCCCCCcEEEeeecCCCCCcCcccccccccccEEeEeCCCC
Q 039167 705 RRAELEKKKNLFELKLHFDQAGRRENEEDEDERLLEALGPPPNLKELWINKYRGKRNVVPKNWIMSLTNLRFLGLHEWRN 784 (923)
Q Consensus 705 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~ 784 (923)
....+..+..|+.+.+..+.. .+........+|+.+.+.... .. +....+..+.+|+.+.+..+..
T Consensus 200 ~~~~F~~~~~L~~i~~~~~~~-----------~i~~~~~~~~~l~~i~ip~~~-~~--i~~~~f~~~~~l~~~~~~~~~~ 265 (394)
T 4fs7_A 200 RDYCFAECILLENMEFPNSLY-----------YLGDFALSKTGVKNIIIPDSF-TE--LGKSVFYGCTDLESISIQNNKL 265 (394)
T ss_dssp CTTTTTTCTTCCBCCCCTTCC-----------EECTTTTTTCCCCEEEECTTC-CE--ECSSTTTTCSSCCEEEECCTTC
T ss_pred CchhhccccccceeecCCCce-----------EeehhhcccCCCceEEECCCc-ee--cccccccccccceeEEcCCCcc
Confidence 012344555566555433220 011122334567777764322 11 3234455677888888766532
Q ss_pred CCCCCCCCCCCCccceeccCCcCceEeCccccCCCCCCCCcccccCcccceeeccccccccccccccccccccccCcccc
Q 039167 785 CEHLPPLGKLPSLESLYIAGMKSVKRVGNEFLGVESDMDGSSVIAFAKLKKLTFYIMEELEEWDLGTAIKGEIIIMPRLS 864 (923)
Q Consensus 785 ~~~l~~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~lp~L~ 864 (923)
.-.-..+..+++|+.+..... .++... .....+|+.+.+.. +++.+. ...+..+.+|+
T Consensus 266 ~i~~~~F~~~~~l~~~~~~~~----~i~~~~-----------F~~~~~L~~i~l~~--~i~~I~-----~~aF~~c~~L~ 323 (394)
T 4fs7_A 266 RIGGSLFYNCSGLKKVIYGSV----IVPEKT-----------FYGCSSLTEVKLLD--SVKFIG-----EEAFESCTSLV 323 (394)
T ss_dssp EECSCTTTTCTTCCEEEECSS----EECTTT-----------TTTCTTCCEEEECT--TCCEEC-----TTTTTTCTTCC
T ss_pred eeeccccccccccceeccCce----eecccc-----------cccccccccccccc--ccceec-----hhhhcCCCCCC
Confidence 211222556666666655432 122211 12455666666542 222221 23466789999
Q ss_pred eeeecccccCCCCC-cCCCCCCCccEEEec
Q 039167 865 SLTIWSCRKLKALP-DHLLQKSTLQKLEIW 893 (923)
Q Consensus 865 ~L~l~~c~~l~~lp-~~l~~l~sL~~L~l~ 893 (923)
.++|..+ +..++ ..+.++++|+.+++.
T Consensus 324 ~i~lp~~--v~~I~~~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 324 SIDLPYL--VEEIGKRSFRGCTSLSNINFP 351 (394)
T ss_dssp EECCCTT--CCEECTTTTTTCTTCCEECCC
T ss_pred EEEeCCc--ccEEhHHhccCCCCCCEEEEC
Confidence 9999654 55664 357788999999883
No 214
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.42 E-value=3.9e-05 Score=74.37 Aligned_cols=116 Identities=16% Similarity=0.137 Sum_probs=80.1
Q ss_pred chHHhhcCCcccEEecccc-CCcccccccccccccccCCCCCcEEeccCCCCcc-----ccchhhhCCCCCcEEecCCCc
Q 039167 548 LPQLFDKLTCLRALKLEVH-NERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIE-----RLPETLCELYNLEHLNVNCCV 621 (923)
Q Consensus 548 l~~~~~~~~~Lr~L~L~~~-~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~-----~lp~~i~~L~~L~~L~L~~~~ 621 (923)
+...+...+.|++|+|++| . +.......+...+...++|++|+|++|. +. .+...+...++|++|+|++|.
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~--i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMN--IPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTT--CCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHhcCCCCCEEEecCCCC--CCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 3455778999999999987 5 2222344566677778999999999998 65 355667777899999999997
Q ss_pred cccc-----cCccccCCCCCCEEeC--CCCccccc----CCcCCCCCCCCCcCCceE
Q 039167 622 KLRE-----LPQGIGRLRKLMYLDN--ECTVSLRY----LPVGIGKLIRLRRVKEFV 667 (923)
Q Consensus 622 ~l~~-----lp~~i~~L~~L~~L~l--~~~~~l~~----~p~~i~~L~~L~~L~~~~ 667 (923)
+.. +...+...++|++|++ ++|..... +...+...++|++|++..
T Consensus 105 -i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 105 -ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 160 (185)
T ss_dssp -CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred -CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccC
Confidence 543 5666778889999999 66632111 222233345566555443
No 215
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.39 E-value=3.7e-05 Score=78.42 Aligned_cols=82 Identities=22% Similarity=0.195 Sum_probs=61.6
Q ss_pred cCCCCCcEEeccCCCCcccc---chhhhCCCCCcEEecCCCccccccCccccCCC--CCCEEeCCCCcccccCCc-----
Q 039167 583 EKLLHLKYLNLANQMEIERL---PETLCELYNLEHLNVNCCVKLRELPQGIGRLR--KLMYLDNECTVSLRYLPV----- 652 (923)
Q Consensus 583 ~~l~~L~~L~L~~~~~l~~l---p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~--~L~~L~l~~~~~l~~~p~----- 652 (923)
.++++|+.|+|++|. +..+ |..++.+++|++|+|++|. +..+ ..+..+. +|++|++++|.....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 468899999999998 6654 4677899999999999997 7665 3455555 999999999965444542
Q ss_pred --CCCCCCCCCcCCceE
Q 039167 653 --GIGKLIRLRRVKEFV 667 (923)
Q Consensus 653 --~i~~L~~L~~L~~~~ 667 (923)
.+..+++|+.|+...
T Consensus 244 ~~il~~~P~L~~LDg~~ 260 (267)
T 3rw6_A 244 SAIRERFPKLLRLDGHE 260 (267)
T ss_dssp HHHHHHCTTCCEESSCB
T ss_pred HHHHHHCcccCeECCcC
Confidence 245677777776543
No 216
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.36 E-value=0.00099 Score=80.05 Aligned_cols=154 Identities=18% Similarity=0.174 Sum_probs=85.2
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcc---cc-cccceEEEE-EeCCcccHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGD---VE-KNFEKRIWV-CVSDPFDEFRI 251 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~-~~F~~~~wv-~~s~~~~~~~~ 251 (923)
..++||+.+++++.+.|... ...-+.|+|++|+||||+|+.+.+... +. ......+|. ..+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------
T ss_pred CCccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------
Confidence 35899999999999998643 334568999999999999999987321 00 112233332 11110
Q ss_pred HHHHHHHHhCCCCCCcCHHHHHHHHHHHh-cCCceEEEecCCCCC--------Chhh-HHHhHHhhhcCCCCcEEEEEec
Q 039167 252 ARAIIEALTGCLPNFVEFQSLMQHIQKHV-AGKKLLLVLDDVWNE--------NFHK-WEQFNNCLKNCLYGSKILITTR 321 (923)
Q Consensus 252 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~--------~~~~-~~~l~~~l~~~~~gs~iivTtR 321 (923)
+.+. ......+.....+.+.+ ..++.+|++|++..- ...+ ...+...+. ..+.++|.+|.
T Consensus 254 -------~~~~-~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~ 323 (758)
T 1r6b_X 254 -------LAGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTT 323 (758)
T ss_dssp --------CCC-CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEEC
T ss_pred -------hccc-cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeC
Confidence 0000 11122333333333333 346789999999543 1111 111222222 22456777766
Q ss_pred chHHHHHh-------cccceEeCCCCChHHHHHHHHHh
Q 039167 322 KEAVARIM-------GSTNIISVNVLSGMECWLVFESL 352 (923)
Q Consensus 322 ~~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~ 352 (923)
........ .....+.+.+.+.++..+++...
T Consensus 324 ~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l 361 (758)
T 1r6b_X 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_dssp HHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHH
T ss_pred chHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHH
Confidence 54432111 12346889999999988888754
No 217
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.33 E-value=0.0048 Score=63.07 Aligned_cols=183 Identities=14% Similarity=0.101 Sum_probs=91.2
Q ss_pred CceecchhhHHHHHHHH---hcCCCC---CCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHH
Q 039167 177 SEIFGRKDEKNELVDRL---ICENSI---EQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFR 250 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L---~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 250 (923)
.+++|.+..++++.+.+ ...... .....+-+.|+|++|+||||+|+.+++. ....| +.+..+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~i~~~~~~~--- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSDFVE--- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCCE---EEECSCSSTT---
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCCE---EEEeHHHHHH---
Confidence 46889888777665543 221100 0112345889999999999999999873 22222 3332221110
Q ss_pred HHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCC----------h----hhHHHhHHhhhc--CCCCc
Q 039167 251 IARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNEN----------F----HKWEQFNNCLKN--CLYGS 314 (923)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~----~~~~~l~~~l~~--~~~gs 314 (923)
. ............+.........++++|++.... . .....+...+.. ...+.
T Consensus 84 -----------~-~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 151 (257)
T 1lv7_A 84 -----------M-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 151 (257)
T ss_dssp -----------S-CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCE
T ss_pred -----------H-hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCE
Confidence 0 001112223333333444566799999982110 0 111222222221 12345
Q ss_pred EEEEEecchH-HHHHh-c---ccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCC-ChHHHH
Q 039167 315 KILITTRKEA-VARIM-G---STNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKG-LPLATK 384 (923)
Q Consensus 315 ~iivTtR~~~-v~~~~-~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~ 384 (923)
.||.||...+ +.... . -...+.+...+.++-.+++....-... ...... ...+++.+.| .+--+.
T Consensus 152 ~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~-l~~~~~----~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 152 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP-LAPDID----AAIIARGTPGFSGADLA 222 (257)
T ss_dssp EEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCCHHHHH
T ss_pred EEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC-CCcccc----HHHHHHHcCCCCHHHHH
Confidence 6777776543 21111 1 134677888888887777766542211 111111 2346677777 554443
No 218
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.33 E-value=0.0019 Score=68.31 Aligned_cols=51 Identities=25% Similarity=0.363 Sum_probs=36.8
Q ss_pred CceecchhhHHHHHHHHhcC---CCC-----CCCCCEEEEEEecCCChHHHHHHHHhcC
Q 039167 177 SEIFGRKDEKNELVDRLICE---NSI-----EQKGPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~---~~~-----~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
..++|.+..++.+...+... ... .......+.|+|++|+|||++|+.+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999888777531 000 0013456889999999999999999873
No 219
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.30 E-value=0.00037 Score=83.56 Aligned_cols=155 Identities=14% Similarity=0.181 Sum_probs=88.3
Q ss_pred CceecchhhHHHHHHHHhcCCC---CCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENS---IEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIAR 253 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 253 (923)
..++|.+..++.+...+..... ........+.++|++|+|||++|+.+++. ....-...+.++++.-.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~~---- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEKH---- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSSC----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhccccc----
Confidence 4689999999888887764321 01123347999999999999999999873 22222234455544322100
Q ss_pred HHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCC-----------CCcEEEEEecc
Q 039167 254 AIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCL-----------YGSKILITTRK 322 (923)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~ 322 (923)
......+...++ ....-+|+||++.....+....+...+..+. ...+||+||..
T Consensus 565 ------------~~~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 565 ------------STSGGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ------------CCC---CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ------------ccccchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 000011111111 1234599999997766666677777665431 24588888873
Q ss_pred -----hH----HHHHh-----cc-cceEeCCCCChHHHHHHHHHh
Q 039167 323 -----EA----VARIM-----GS-TNIISVNVLSGMECWLVFESL 352 (923)
Q Consensus 323 -----~~----v~~~~-----~~-~~~~~l~~L~~~~~~~lf~~~ 352 (923)
.. +...+ .. ..++.+.+++.++..+++...
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 11 11111 11 247788888887777666543
No 220
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.27 E-value=0.0094 Score=65.30 Aligned_cols=109 Identities=9% Similarity=0.109 Sum_probs=67.2
Q ss_pred cccccC-CceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCccccccccccc-ccccCCCCCcEEeccCCCCccccc
Q 039167 526 NIEALR-GLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVP-TNIEKLLHLKYLNLANQMEIERLP 603 (923)
Q Consensus 526 ~~~~~~-~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~l~~lp 603 (923)
.|..++ .|+++.+... +..+ -...|.+|.+|+.+.+..+. ...+..++ ..+..+..|+.+.+..+ +..++
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~I-g~~AF~~C~~L~~i~~~~n~----p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~ 129 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEI-GSNAFYNCTSLKRVTIQDNK----PSCVKKIGRQAFMFCSELTDIPILDS--VTEID 129 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEE-CTTTTTTCTTCCEEEEGGGC----CCCCCEECTTTTTTCTTCCBCGGGTT--CSEEC
T ss_pred hccCCCCcCEEEEECCC-eeEE-hHHHhhCCccCceEeecCCC----CCeeeEechhhchhcccceeeccCCc--cceeh
Confidence 455554 4788887653 2332 24558888999998887543 22345554 34566777877776554 55555
Q ss_pred h-hhhCCCCCcEEecCCCccccccCc-cccCCCCCCEEeCCCC
Q 039167 604 E-TLCELYNLEHLNVNCCVKLRELPQ-GIGRLRKLMYLDNECT 644 (923)
Q Consensus 604 ~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~ 644 (923)
. .+..+.+|+.+.+... +..++. .+..+.+|+.+.+..+
T Consensus 130 ~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 130 SEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp TTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT
T ss_pred hhhhhhhcccccccccce--eeeecccceecccccccccccce
Confidence 3 4567788888888643 444443 3556777777777543
No 221
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.27 E-value=0.0048 Score=68.94 Aligned_cols=97 Identities=10% Similarity=0.085 Sum_probs=59.3
Q ss_pred eEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEe----------c----chHH-HHHhcccceEeCCCCChHHHHHHH
Q 039167 285 LLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITT----------R----KEAV-ARIMGSTNIISVNVLSGMECWLVF 349 (923)
Q Consensus 285 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt----------R----~~~v-~~~~~~~~~~~l~~L~~~~~~~lf 349 (923)
-++++|++...+.+..+.+...+...... -+|+.| . ...+ .........+.+.+++.++..+.+
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 38999999777767777787777655444 344344 2 1111 112233456899999999999999
Q ss_pred HHhhcCCCCccchhhHHHHHHHHHHhc-CCChHHHHHH
Q 039167 350 ESLAFVGKSMEERENLEKIGREITRKC-KGLPLATKTI 386 (923)
Q Consensus 350 ~~~a~~~~~~~~~~~~~~~~~~i~~~c-~GlPLai~~~ 386 (923)
...+-....... .+....|++.+ +|.|-.+..+
T Consensus 376 ~~~~~~~~~~~~----~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 376 KIRAQTEGINIS----EEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHTCCBC----HHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHhCCCCC----HHHHHHHHHHccCCCHHHHHHH
Confidence 876521111111 23456677777 7877655443
No 222
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.0058 Score=65.55 Aligned_cols=178 Identities=15% Similarity=0.087 Sum_probs=95.0
Q ss_pred CceecchhhHHHHHHHHhc----CCC---CCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHH
Q 039167 177 SEIFGRKDEKNELVDRLIC----ENS---IEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEF 249 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 249 (923)
.++.|.++.+++|.+.+.- ++- .+-...+-|.++|++|.|||.||+++++. ....| +.+..+.-.+.
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~sk- 221 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCKF---IRVSGAELVQK- 221 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCEE---EEEEGGGGSCS-
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCCc---eEEEhHHhhcc-
Confidence 3578888888877665432 100 01224567899999999999999999983 33333 23333321110
Q ss_pred HHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCC--------Chh------hHHHhHHhhhc--CCCC
Q 039167 250 RIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE--------NFH------KWEQFNNCLKN--CLYG 313 (923)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--------~~~------~~~~l~~~l~~--~~~g 313 (923)
.-......+...+...-...+++|++|++..- ... ....+...+.. ...+
T Consensus 222 --------------~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 287 (405)
T 4b4t_J 222 --------------YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKN 287 (405)
T ss_dssp --------------STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCC
T ss_pred --------------ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCC
Confidence 00001111122222223456899999998531 000 11222222322 2234
Q ss_pred cEEEEEecchHHH-HHh---c-ccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCC
Q 039167 314 SKILITTRKEAVA-RIM---G-STNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGL 379 (923)
Q Consensus 314 s~iivTtR~~~v~-~~~---~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~Gl 379 (923)
-.||.||...+.. ..+ | -+..+.++..+.++-.++|..+.-.... ...-+ ...+++.+.|.
T Consensus 288 V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l-~~dvd----l~~lA~~t~G~ 353 (405)
T 4b4t_J 288 IKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL-TRGIN----LRKVAEKMNGC 353 (405)
T ss_dssp EEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC-CSSCC----HHHHHHHCCSC
T ss_pred eEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC-CccCC----HHHHHHHCCCC
Confidence 4566677654321 111 2 2568899988988888888766532211 11122 35677778775
No 223
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.004 Score=67.82 Aligned_cols=51 Identities=25% Similarity=0.292 Sum_probs=37.0
Q ss_pred CceecchhhHHHHHHHHhcC---C-C---CCCCCCEEEEEEecCCChHHHHHHHHhcC
Q 039167 177 SEIFGRKDEKNELVDRLICE---N-S---IEQKGPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~---~-~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.++.|.++.+++|.+.+... + . .+-...+-|.++|++|.|||+||+++++.
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46889988888887755321 0 0 01234567899999999999999999983
No 224
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.0065 Score=66.28 Aligned_cols=178 Identities=17% Similarity=0.161 Sum_probs=95.7
Q ss_pred CceecchhhHHHHHHHHhcC---CC----CCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHH
Q 039167 177 SEIFGRKDEKNELVDRLICE---NS----IEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEF 249 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~---~~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 249 (923)
.++.|.++.+++|.+.+.-+ +. .+-...+-|.++|++|.|||+||+++++. ....| +.+..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~~---~~v~~s~l~s-- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGANF---IFSPASGIVD-- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGTCC--
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehhhhcc--
Confidence 35788888887776655321 00 01234578999999999999999999983 33332 2333332111
Q ss_pred HHHHHHHHHHhCCCCCCcCHHH-HHHHHHHHhcCCceEEEecCCCCC-------C---hh----hHHHhHHhhhcC--CC
Q 039167 250 RIARAIIEALTGCLPNFVEFQS-LMQHIQKHVAGKKLLLVLDDVWNE-------N---FH----KWEQFNNCLKNC--LY 312 (923)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~kr~LlVlDdv~~~-------~---~~----~~~~l~~~l~~~--~~ 312 (923)
........ +.......-...+++|++|++... . .. ....+...+... ..
T Consensus 254 --------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 319 (437)
T 4b4t_L 254 --------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG 319 (437)
T ss_dssp --------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT
T ss_pred --------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC
Confidence 00011111 122222223457899999998531 0 00 122233333322 23
Q ss_pred CcEEEEEecchHHHHH-h---c-ccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCCh
Q 039167 313 GSKILITTRKEAVARI-M---G-STNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLP 380 (923)
Q Consensus 313 gs~iivTtR~~~v~~~-~---~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlP 380 (923)
+..||.||...+.... + | -+..+.++..+.++-.++|..+.-.... ...-+ ...+++.+.|.-
T Consensus 320 ~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCC----HHHHHHTCCSCC
T ss_pred CeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHhCCCCC
Confidence 5577778876543221 1 1 1457888888888888888766532211 11112 356777887753
No 225
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.03 E-value=0.0052 Score=68.17 Aligned_cols=179 Identities=17% Similarity=0.149 Sum_probs=94.5
Q ss_pred CceecchhhHHHHHHHHhc---CC---CCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHH
Q 039167 177 SEIFGRKDEKNELVDRLIC---EN---SIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFR 250 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~---~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 250 (923)
.+++|.++.++++.+.+.. .. .....-.+-|.|+|++|+|||+||+.+++. ....| +.++.+.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~f---~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVPF---FHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCCE---EEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCCe---eeCCHHHHHHH--
Confidence 3588988877766654321 10 000112344889999999999999999983 32222 23333221110
Q ss_pred HHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCCh--------------hhHHHhHHhhhc--CCCCc
Q 039167 251 IARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENF--------------HKWEQFNNCLKN--CLYGS 314 (923)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~~~gs 314 (923)
............+.+.....+.+|+||++..-.. .....+...+.. ...+.
T Consensus 89 -------------~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~v 155 (476)
T 2ce7_A 89 -------------FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGI 155 (476)
T ss_dssp -------------CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTE
T ss_pred -------------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCE
Confidence 0000112223334444556789999999943110 112233333321 12355
Q ss_pred EEEEEecchHHHH-Hh-c--c-cceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCCh
Q 039167 315 KILITTRKEAVAR-IM-G--S-TNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLP 380 (923)
Q Consensus 315 ~iivTtR~~~v~~-~~-~--~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlP 380 (923)
.||.||...+... .. . . ...+.+...+.++-.+++..++-... .....+ ...+++.+.|..
T Consensus 156 iVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~-l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 156 IVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP-LAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCC
T ss_pred EEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC-Ccchhh----HHHHHHhcCCCc
Confidence 6777777654322 11 1 1 33788888888777778776553211 111111 344778888876
No 226
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.01 E-value=0.0023 Score=76.62 Aligned_cols=148 Identities=16% Similarity=0.130 Sum_probs=79.8
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcc---cccc-cceEEEEEeCCcccHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGD---VEKN-FEKRIWVCVSDPFDEFRIA 252 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~-F~~~~wv~~s~~~~~~~~~ 252 (923)
..++||+.+++++...+... ...-+.++|++|+|||++|+.+.+... +-.. .... ++.+.-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~------~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~-~~~~~~-------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRR------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKR-VMTLDM-------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCS------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCC-EECC----------
T ss_pred CCccCchHHHHHHHHHHhCC------CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCe-EEEecc--------
Confidence 35999999999999999653 223478999999999999999987310 0000 0111 111111
Q ss_pred HHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecchHHHHH----
Q 039167 253 RAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRKEAVARI---- 328 (923)
Q Consensus 253 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~---- 328 (923)
+....+ .-...+...+......++.+|++|.- .+....+...+.. ...++|.||........
T Consensus 245 -------g~~~~G-~~e~~l~~~~~~~~~~~~~iLfiD~~----~~~~~~L~~~l~~--~~v~~I~at~~~~~~~~~~~d 310 (758)
T 3pxi_A 245 -------GTKYRG-EFEDRLKKVMDEIRQAGNIILFIDAA----IDASNILKPSLAR--GELQCIGATTLDEYRKYIEKD 310 (758)
T ss_dssp ----------------CTTHHHHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTTC
T ss_pred -------cccccc-hHHHHHHHHHHHHHhcCCEEEEEcCc----hhHHHHHHHHHhc--CCEEEEeCCChHHHHHHhhcc
Confidence 000000 00011222333334467889999921 1222223333332 24566666665431111
Q ss_pred ---hcccceEeCCCCChHHHHHHHHHhh
Q 039167 329 ---MGSTNIISVNVLSGMECWLVFESLA 353 (923)
Q Consensus 329 ---~~~~~~~~l~~L~~~~~~~lf~~~a 353 (923)
......+.+++.+.++..+++....
T Consensus 311 ~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 311 AALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1223579999999999999998654
No 227
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.96 E-value=0.0085 Score=65.67 Aligned_cols=109 Identities=12% Similarity=0.131 Sum_probs=73.4
Q ss_pred cccccccCCceEEEeCCCCCCCc--cchHHhhcCCcccEEeccccCCccccccccccc-ccccCCCCCcEEeccCCCCcc
Q 039167 524 YDNIEALRGLRSLLLESTKHSSV--ILPQLFDKLTCLRALKLEVHNERLPEDFIKEVP-TNIEKLLHLKYLNLANQMEIE 600 (923)
Q Consensus 524 ~~~~~~~~~Lr~L~l~~~~~~~~--~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~l~ 600 (923)
...|.++.+|+.+.+..+....+ .-...|..|..|+.+.+..+ +..++ ..+..+.+|+.+.+..+ +.
T Consensus 80 ~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--------~~~I~~~aF~~c~~L~~i~lp~~--~~ 149 (394)
T 4gt6_A 80 SNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--------VTEIDSEAFHHCEELDTVTIPEG--VT 149 (394)
T ss_dssp TTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--------CSEECTTTTTTCTTCCEEECCTT--CC
T ss_pred HHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--------cceehhhhhhhhcccccccccce--ee
Confidence 45788999999999876532221 12445888889988877632 44444 34677899999999755 45
Q ss_pred ccc-hhhhCCCCCcEEecCCCccccccCccccCCCCCCEEeCCCC
Q 039167 601 RLP-ETLCELYNLEHLNVNCCVKLRELPQGIGRLRKLMYLDNECT 644 (923)
Q Consensus 601 ~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~ 644 (923)
.++ ..+..+.+|+.+.+..+ +..+....-...+|+.+.+...
T Consensus 150 ~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~ 192 (394)
T 4gt6_A 150 SVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAK 192 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTT
T ss_pred eecccceecccccccccccce--eeEeccccccccceeEEEECCc
Confidence 554 35678889999998763 5566554444566777776543
No 228
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.014 Score=63.47 Aligned_cols=177 Identities=16% Similarity=0.102 Sum_probs=93.4
Q ss_pred ceecchhhHHHHHHHHhc----CCC---CCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHH
Q 039167 178 EIFGRKDEKNELVDRLIC----ENS---IEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFR 250 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 250 (923)
++.|.++.+++|.+.+.- ++. .+-...+-|.++|++|.|||+||+++++. ....| +.+..+.-.+
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~f---i~vs~s~L~s--- 281 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDATF---IRVIGSELVQ--- 281 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGCC---
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCCe---EEEEhHHhhc---
Confidence 578888888888765421 100 01235677899999999999999999983 43333 2333322111
Q ss_pred HHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCC--------Chh------hHHHhHHhhhcC--CCCc
Q 039167 251 IARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE--------NFH------KWEQFNNCLKNC--LYGS 314 (923)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--------~~~------~~~~l~~~l~~~--~~gs 314 (923)
. .-......+...+...-...+++|++|++... ... ....+...+... ..+.
T Consensus 282 -----------k-~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V 349 (467)
T 4b4t_H 282 -----------K-YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNI 349 (467)
T ss_dssp -----------C-SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTE
T ss_pred -----------c-cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcE
Confidence 0 00001111222222233456899999998431 000 111122222222 2344
Q ss_pred EEEEEecchHHH-HHh---c-ccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCC
Q 039167 315 KILITTRKEAVA-RIM---G-STNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGL 379 (923)
Q Consensus 315 ~iivTtR~~~v~-~~~---~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~Gl 379 (923)
.||.||...+.. ..+ | -+..+.+...+.++-.++|+.+.-.... ...-+ ...|++.|.|.
T Consensus 350 iVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l-~~dvd----l~~LA~~T~Gf 414 (467)
T 4b4t_H 350 KVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV-ERGIR----WELISRLCPNS 414 (467)
T ss_dssp EEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB-CSSCC----HHHHHHHCCSC
T ss_pred EEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC-CCCCC----HHHHHHHCCCC
Confidence 566677553321 111 2 2568889888888888888766532211 11112 35577788775
No 229
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.92 E-value=0.00076 Score=70.91 Aligned_cols=55 Identities=18% Similarity=0.102 Sum_probs=34.4
Q ss_pred hhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccc-cccceEEEEEe
Q 039167 183 KDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVE-KNFEKRIWVCV 242 (923)
Q Consensus 183 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~ 242 (923)
...++.+.+++...+. .....+.|+|+.|+|||+||+.+++. .. ..-..++++++
T Consensus 134 ~~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~--~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHE--LSEKKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHH--HHHHSCCCEEEEEH
T ss_pred HHHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEH
Confidence 3344455566654321 12467899999999999999999984 32 22233455544
No 230
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.84 E-value=0.0021 Score=77.18 Aligned_cols=135 Identities=17% Similarity=0.261 Sum_probs=73.8
Q ss_pred CceecchhhHHHHHHHHhcCCC---CCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENS---IEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIAR 253 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 253 (923)
..++|.+..++.+...+..... ........+.++|++|+|||++|+.+.+. .. ...+.++++.-.....
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~--l~---~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH--HT---CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH--hc---CCEEEEechhhcchhh---
Confidence 3588999888888776653211 01123457999999999999999999873 22 2233444443221100
Q ss_pred HHHHHHhCCCCCCcCHHHHHHHHHHHh-cCCceEEEecCCCCCChhhHHHhHHhhhcCC-----------CCcEEEEEec
Q 039167 254 AIIEALTGCLPNFVEFQSLMQHIQKHV-AGKKLLLVLDDVWNENFHKWEQFNNCLKNCL-----------YGSKILITTR 321 (923)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR 321 (923)
...+.+..+.....++ ...+...+ +...-+|+||++.....+....+...+..+. ....||.||.
T Consensus 530 --~~~l~g~~~g~~g~~~-~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN 606 (758)
T 1r6b_X 530 --VSRLIGAPPGYVGFDQ-GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTN 606 (758)
T ss_dssp --CSSSCCCCSCSHHHHH-TTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEEC
T ss_pred --HhhhcCCCCCCcCccc-cchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecC
Confidence 0001111111111111 11222223 2345799999997766666667777665431 2345777775
Q ss_pred c
Q 039167 322 K 322 (923)
Q Consensus 322 ~ 322 (923)
.
T Consensus 607 ~ 607 (758)
T 1r6b_X 607 A 607 (758)
T ss_dssp S
T ss_pred c
Confidence 4
No 231
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.83 E-value=0.0024 Score=68.25 Aligned_cols=150 Identities=15% Similarity=0.109 Sum_probs=85.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHH
Q 039167 178 EIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIE 257 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 257 (923)
.++|+++.++.+...+... .-+.++|++|+|||+||+.+.+. ....| ..+..+......++.....
T Consensus 28 ~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~--~~~~~---~~i~~~~~~~~~~l~g~~~- 93 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKT--MDLDF---HRIQFTPDLLPSDLIGTMI- 93 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHH--TTCCE---EEEECCTTCCHHHHHEEEE-
T ss_pred ceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHH--hCCCe---EEEecCCCCChhhcCCcee-
Confidence 5789999998888887642 25889999999999999999873 33222 2233333333222211100
Q ss_pred HHhCCCCCCcCHHHHHHHHHHHhc-C--CceEEEecCCCCCChhhHHHhHHhhhcC-----------CCCcEEEEEecch
Q 039167 258 ALTGCLPNFVEFQSLMQHIQKHVA-G--KKLLLVLDDVWNENFHKWEQFNNCLKNC-----------LYGSKILITTRKE 323 (923)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~l~~~l~-~--kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTtR~~ 323 (923)
........ .+. + ...++++|++...+......+...+... .....||.|+...
T Consensus 94 --~~~~~~~~-----------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~ 160 (331)
T 2r44_A 94 --YNQHKGNF-----------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPV 160 (331)
T ss_dssp --EETTTTEE-----------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTT
T ss_pred --ecCCCCce-----------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCC
Confidence 00000000 000 0 1259999999766655555565555432 2244555565522
Q ss_pred H------HHH-Hhcccc-eEeCCCCChHHHHHHHHHhhc
Q 039167 324 A------VAR-IMGSTN-IISVNVLSGMECWLVFESLAF 354 (923)
Q Consensus 324 ~------v~~-~~~~~~-~~~l~~L~~~~~~~lf~~~a~ 354 (923)
. +.. ...... .+.+.+.+.++-.+++...+.
T Consensus 161 ~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 161 EQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp CCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred cccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 1 111 112223 588999999998888887653
No 232
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.80 E-value=0.0049 Score=64.31 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=22.3
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.++.+.++|++|+|||+||+.+++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568889999999999999999983
No 233
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.78 E-value=0.0043 Score=67.66 Aligned_cols=177 Identities=16% Similarity=0.180 Sum_probs=92.1
Q ss_pred CceecchhhHHHHHHHHhc----CCC---CCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHH
Q 039167 177 SEIFGRKDEKNELVDRLIC----ENS---IEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEF 249 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 249 (923)
.++.|-++.+++|.+.+.. ++. .+-...+-|.++|++|.|||.||+++++. ....| +.+..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~~-- 253 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNATF---LKLAAPQLVQ-- 253 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGCS--
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCCE---EEEehhhhhh--
Confidence 3588988888888765421 110 01234678899999999999999999983 33332 2333322110
Q ss_pred HHHHHHHHHHhCCCCCCcCHHHHHHHH-HHHhcCCceEEEecCCCC------C-Ch---hhH----HHhHHhhhcC--CC
Q 039167 250 RIARAIIEALTGCLPNFVEFQSLMQHI-QKHVAGKKLLLVLDDVWN------E-NF---HKW----EQFNNCLKNC--LY 312 (923)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~l~~kr~LlVlDdv~~------~-~~---~~~----~~l~~~l~~~--~~ 312 (923)
. .....+...+.+ ...-...+++|++|++.. . .. ... ..+...+... ..
T Consensus 254 ------------~--~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~ 319 (434)
T 4b4t_M 254 ------------M--YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD 319 (434)
T ss_dssp ------------S--CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC
T ss_pred ------------c--ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC
Confidence 0 000111111122 222234679999999831 0 00 011 1222233222 23
Q ss_pred CcEEEEEecchHHHH-Hh---c-ccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCC
Q 039167 313 GSKILITTRKEAVAR-IM---G-STNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGL 379 (923)
Q Consensus 313 gs~iivTtR~~~v~~-~~---~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~Gl 379 (923)
+-.||.||...+... .+ | -+..+.++..+.++-.++|..+.-.... ...-+ ...|++.+.|.
T Consensus 320 ~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 320 RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-DDDIN----WQELARSTDEF 386 (434)
T ss_dssp SSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-CSCCC----HHHHHHHCSSC
T ss_pred CEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-CCcCC----HHHHHHhCCCC
Confidence 445666776643321 11 1 2457888888888888888755422111 11112 35567777774
No 234
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.73 E-value=0.0057 Score=60.73 Aligned_cols=86 Identities=22% Similarity=0.194 Sum_probs=51.4
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHh-----------CCC-CCCcCHH
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALT-----------GCL-PNFVEFQ 270 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~-----------~~~-~~~~~~~ 270 (923)
.-.++.|+|.+|+||||||..+.. ..-..++|+.....++...+.. +.+..+ ... ....+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 345899999999999999999876 1223577887766555554433 222221 111 1112223
Q ss_pred HHHHHHHHHhcCCceEEEecCCCC
Q 039167 271 SLMQHIQKHVAGKKLLLVLDDVWN 294 (923)
Q Consensus 271 ~~~~~l~~~l~~kr~LlVlDdv~~ 294 (923)
.....+...+..+.-+||+|.+-.
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcHH
Confidence 344444445544577999998743
No 235
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.70 E-value=0.0045 Score=75.11 Aligned_cols=137 Identities=15% Similarity=0.252 Sum_probs=72.0
Q ss_pred ceecchhhHHHHHHHHhcCCC---CCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHH
Q 039167 178 EIFGRKDEKNELVDRLICENS---IEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARA 254 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 254 (923)
.++|.+..++.+...+..... ........+.|+|+.|+|||++|+.+.+. ....-...+.++.+.-.....
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~~~~~---- 632 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKHA---- 632 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCCSSGG----
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhccchhH----
Confidence 579999988888877754211 01123468999999999999999999873 211111234444443221100
Q ss_pred HHHHHhCCCCCCcCHHHHHHHHHHHhc-CCceEEEecCCCCCChhhHHHhHHhhhcCC-----------CCcEEEEEecc
Q 039167 255 IIEALTGCLPNFVEFQSLMQHIQKHVA-GKKLLLVLDDVWNENFHKWEQFNNCLKNCL-----------YGSKILITTRK 322 (923)
Q Consensus 255 i~~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~ 322 (923)
...+.+..+.....+. ...+...++ ...-+|+||++...+.+....+...+..+. .+..||+||..
T Consensus 633 -~s~l~g~~~~~~G~~~-~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~ 710 (854)
T 1qvr_A 633 -VSRLIGAPPGYVGYEE-GGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNL 710 (854)
T ss_dssp -GGGC---------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCT
T ss_pred -HHHHcCCCCCCcCccc-cchHHHHHHhCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCc
Confidence 0001010011000000 011222222 234589999997666666667777765431 23447777764
No 236
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.67 E-value=0.013 Score=63.06 Aligned_cols=176 Identities=16% Similarity=0.131 Sum_probs=92.1
Q ss_pred ceecchhhHHHHHHHHhc----CCC---CCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHH
Q 039167 178 EIFGRKDEKNELVDRLIC----ENS---IEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFR 250 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 250 (923)
++.|.++.+++|.+.+.- ++. .+-...+-|.++|++|.|||.||+++++. ....| +.+..+.-.+
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~l~s--- 254 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSELIQ--- 254 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE---EEEESGGGCC---
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCE---EEEEHHHhhh---
Confidence 577888888777665432 110 01234577999999999999999999983 33333 2233222110
Q ss_pred HHHHHHHHHhCCCCCCcCHHHHHHHH-HHHhcCCceEEEecCCCCC--------C--hh----hHHHhHHhhhcC--CCC
Q 039167 251 IARAIIEALTGCLPNFVEFQSLMQHI-QKHVAGKKLLLVLDDVWNE--------N--FH----KWEQFNNCLKNC--LYG 313 (923)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~l~~kr~LlVlDdv~~~--------~--~~----~~~~l~~~l~~~--~~g 313 (923)
....+.+...+.+ ...-...+++|++|++... . .. ....+...+... ..+
T Consensus 255 -------------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ 321 (437)
T 4b4t_I 255 -------------KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGD 321 (437)
T ss_dssp -------------SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSS
T ss_pred -------------ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCC
Confidence 0001111122222 2222456899999988421 0 00 112222222222 234
Q ss_pred cEEEEEecchHHHHH-h---cc-cceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCC
Q 039167 314 SKILITTRKEAVARI-M---GS-TNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGL 379 (923)
Q Consensus 314 s~iivTtR~~~v~~~-~---~~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~Gl 379 (923)
..||.||...+.... + |. +..+.+..-+.++-.++|..+.-... ....-+ ...+++.+.|.
T Consensus 322 ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~-l~~dvd----l~~LA~~T~Gf 387 (437)
T 4b4t_I 322 VKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN-LSEDVN----LETLVTTKDDL 387 (437)
T ss_dssp EEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC-BCSCCC----HHHHHHHCCSC
T ss_pred EEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC-CCCcCC----HHHHHHhCCCC
Confidence 566667765543221 1 12 34678888888888888876653221 111122 34566777764
No 237
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.62 E-value=0.00069 Score=69.99 Aligned_cols=51 Identities=29% Similarity=0.402 Sum_probs=34.6
Q ss_pred CceecchhhHHHHHHHHhc---CCC---CCCCCCEEEEEEecCCChHHHHHHHHhcC
Q 039167 177 SEIFGRKDEKNELVDRLIC---ENS---IEQKGPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~---~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.+++|.+..++.+.+.+.. ... ......+-+.|+|++|+|||++|+.+++.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 4689998888777765531 000 00012234779999999999999999883
No 238
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.60 E-value=0.0011 Score=68.53 Aligned_cols=68 Identities=19% Similarity=0.343 Sum_probs=44.9
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEe--CCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhc
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCV--SDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVA 281 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (923)
-+++.|+|++|+||||||.++... .-..++|+++ .+..+. ...+.+.....+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~----------------~~~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG----------------YNTDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT----------------CBCCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh----------------hhcCHHHHHHHHHHHHh
Confidence 457789999999999999999873 1123456666 332111 00345555556666666
Q ss_pred CCceEEEecCCC
Q 039167 282 GKKLLLVLDDVW 293 (923)
Q Consensus 282 ~kr~LlVlDdv~ 293 (923)
..+ +||+|++.
T Consensus 182 ~~~-LLVIDsI~ 192 (331)
T 2vhj_A 182 QHR-VIVIDSLK 192 (331)
T ss_dssp HCS-EEEEECCT
T ss_pred hCC-EEEEeccc
Confidence 666 99999994
No 239
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.56 E-value=0.0053 Score=70.02 Aligned_cols=165 Identities=16% Similarity=0.182 Sum_probs=77.2
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHH
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAII 256 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 256 (923)
.+++|.++..+.+.+.+.-..-........+.++|++|+||||||+.++.. ....| .-+.++...+...+.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~--l~~~~---~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS--LGRKF---VRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH--HTCEE---EEECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh--cCCCe---EEEEecccchhhhhhhHHH
Confidence 357888877777655432111001124568999999999999999999873 22222 1222222122111111110
Q ss_pred HHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCChh----hHHHhHHhhhcCC---------------CCcEEE
Q 039167 257 EALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNENFH----KWEQFNNCLKNCL---------------YGSKIL 317 (923)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~----~~~~l~~~l~~~~---------------~gs~ii 317 (923)
..++. ........+. ......-+++||++...... ....+...+.... ....||
T Consensus 156 ~~ig~------~~~~~~~~~~-~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI 228 (543)
T 3m6a_A 156 TYVGA------MPGRIIQGMK-KAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI 228 (543)
T ss_dssp --------------CHHHHHH-TTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred HHhcc------CchHHHHHHH-HhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence 00100 0001111111 12223448899998654322 1233333332111 234666
Q ss_pred EEecchHH-H-HHhcccceEeCCCCChHHHHHHHHHhh
Q 039167 318 ITTRKEAV-A-RIMGSTNIISVNVLSGMECWLVFESLA 353 (923)
Q Consensus 318 vTtR~~~v-~-~~~~~~~~~~l~~L~~~~~~~lf~~~a 353 (923)
.||..... . .......++.+.+++.++-.+++..+.
T Consensus 229 ~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 229 ATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred eccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 66665321 1 111223578899999988888776643
No 240
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.51 E-value=0.013 Score=69.06 Aligned_cols=178 Identities=13% Similarity=0.125 Sum_probs=94.8
Q ss_pred ceecchhhHHHHHHHHh----cCCC---CCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHH
Q 039167 178 EIFGRKDEKNELVDRLI----CENS---IEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFR 250 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~----~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 250 (923)
++.|.++.+++|.+.+. .++- ..-..++-|.++|++|.|||+||+++++. ...+| +.|+.++
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~~------ 273 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE------ 273 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHHH------
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhHH------
Confidence 57788888877776542 2211 01234577999999999999999999984 33332 2333211
Q ss_pred HHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCC-------Chhh----HHHhHHhhhcC--CCCcEEE
Q 039167 251 IARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNE-------NFHK----WEQFNNCLKNC--LYGSKIL 317 (923)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-------~~~~----~~~l~~~l~~~--~~gs~ii 317 (923)
+ ... ........+...+.......+.+|+||++..- ..+. ..++...+... ..+-.||
T Consensus 274 l--------~sk-~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VI 344 (806)
T 3cf2_A 274 I--------MSK-LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVM 344 (806)
T ss_dssp H--------HSS-CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEE
T ss_pred h--------hcc-cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEE
Confidence 1 010 00111222333333444567899999998421 0011 12222222221 1234455
Q ss_pred EEecchH-HHHHh---cc-cceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCCh
Q 039167 318 ITTRKEA-VARIM---GS-TNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLP 380 (923)
Q Consensus 318 vTtR~~~-v~~~~---~~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlP 380 (923)
.||...+ +-..+ +. ...+++...+.++-.++|..+.-... .....+ ...|++++.|.-
T Consensus 345 aaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~-~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 345 AATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK-LADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSE-ECTTCC----HHHHHHHCCSCC
T ss_pred EecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCC-CCcccC----HHHHHHhcCCCC
Confidence 5665533 22212 11 45788888888888888876542211 111122 456777887764
No 241
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.40 E-value=0.059 Score=57.54 Aligned_cols=158 Identities=12% Similarity=-0.050 Sum_probs=99.5
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHH-Hhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQK-HVA 281 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~ 281 (923)
-.++..++|..|.||++.|+.+.+... ...|+....+.+....+..++ ...+.. -+-
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l---------------------~~~~~~~plf 74 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDWNAI---------------------FSLCQAMSLF 74 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCHHHH---------------------HHHHHHHHHC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCHHHH---------------------HHHhcCcCCc
Confidence 456899999999999999988876311 223432222223223333332 222221 234
Q ss_pred CCceEEEecCCCC-CChhhHHHhHHhhhcCCCCcEEEEEecc-------hHHHHHh-cccceEeCCCCChHHHHHHHHHh
Q 039167 282 GKKLLLVLDDVWN-ENFHKWEQFNNCLKNCLYGSKILITTRK-------EAVARIM-GSTNIISVNVLSGMECWLVFESL 352 (923)
Q Consensus 282 ~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtR~-------~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 352 (923)
+++-++|+|++.. .+...++.+...+.....++.+|++|.. ..+...+ ....+++..+++.++....+...
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 6677888999866 4456788888888766667777776643 2344443 34578999999999988887776
Q ss_pred hcCCCCccchhhHHHHHHHHHHhcCCChHHHHHH
Q 039167 353 AFVGKSMEERENLEKIGREITRKCKGLPLATKTI 386 (923)
Q Consensus 353 a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 386 (923)
+-..+-... .+.+..+++.++|...++...
T Consensus 155 ~~~~g~~i~----~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 155 AKQLNLELD----DAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHTTCEEC----HHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHcCCCCC----HHHHHHHHHHhchHHHHHHHH
Confidence 532221111 234778899999988777653
No 242
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.27 E-value=0.004 Score=61.47 Aligned_cols=112 Identities=16% Similarity=0.014 Sum_probs=61.2
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCC--CcCHHHHHHHHHHHh
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPN--FVEFQSLMQHIQKHV 280 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l 280 (923)
.-.++.|+|..|+||||++..+... ...+-..++.+....... ....+++.++..... .....++...+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 4578999999999999999877763 333322344443332211 112233333322111 122334444444444
Q ss_pred cCCce-EEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecc
Q 039167 281 AGKKL-LLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRK 322 (923)
Q Consensus 281 ~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~ 322 (923)
.+.++ +||+|.+..-+.+..+.+..... . |-.||+|-+.
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~~L~~-~--gi~Vil~Gl~ 125 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVANILAE-N--GFVVIISGLD 125 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHHHHHH-T--TCEEEEECCS
T ss_pred hCCCCCEEEEecCccCcHHHHHHHHHHHh-C--CCeEEEEecc
Confidence 44444 99999996544344444444332 2 6789999884
No 243
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.24 E-value=0.075 Score=57.57 Aligned_cols=23 Identities=39% Similarity=0.398 Sum_probs=20.7
Q ss_pred CEEEEEEecCCChHHHHHHHHhc
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
...+.++|++|+|||++|+.+++
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999999987
No 244
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.22 E-value=0.04 Score=56.62 Aligned_cols=126 Identities=14% Similarity=0.119 Sum_probs=67.0
Q ss_pred EEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHH-hcCCce
Q 039167 207 ISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKH-VAGKKL 285 (923)
Q Consensus 207 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~ 285 (923)
+.++|++|+||||||+.++.. ... ..+++....-.+. ...........+.+. -...+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~--~~~---~~i~i~g~~l~~~----------------~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE--SGL---NFISVKGPELLNM----------------YVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH--TTC---EEEEEETTTTCSS----------------TTHHHHHHHHHHHHHHHHTCSE
T ss_pred EEEECCCCCcHHHHHHHHHHH--cCC---CEEEEEcHHHHhh----------------hhhHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999883 221 2344443221110 000011111122222 234578
Q ss_pred EEEecCCCCCC-----------hhhHHHhHHhhhcCC--CCcEEEEEecchHHHHH-h----cccceEeCCCCChHHHHH
Q 039167 286 LLVLDDVWNEN-----------FHKWEQFNNCLKNCL--YGSKILITTRKEAVARI-M----GSTNIISVNVLSGMECWL 347 (923)
Q Consensus 286 LlVlDdv~~~~-----------~~~~~~l~~~l~~~~--~gs~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~ 347 (923)
++++|++.... ......+...+..+. ...-++.+|...++... . .-...+.++..+.++-.+
T Consensus 106 i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~ 185 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLA 185 (274)
T ss_dssp EEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHH
T ss_pred eEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHH
Confidence 99999984310 011122233333222 23445566666544321 1 124577888888888888
Q ss_pred HHHHhh
Q 039167 348 VFESLA 353 (923)
Q Consensus 348 lf~~~a 353 (923)
+|....
T Consensus 186 il~~~~ 191 (274)
T 2x8a_A 186 ILKTIT 191 (274)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 887754
No 245
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.14 E-value=0.034 Score=52.84 Aligned_cols=66 Identities=5% Similarity=0.078 Sum_probs=37.2
Q ss_pred hcCCceEEEecCCCCC---ChhhHHHhHHhhhcCCCCcEEEEEec---chHHHHHhcc---cceEeCCCCChHHHHH
Q 039167 280 VAGKKLLLVLDDVWNE---NFHKWEQFNNCLKNCLYGSKILITTR---KEAVARIMGS---TNIISVNVLSGMECWL 347 (923)
Q Consensus 280 l~~kr~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~iivTtR---~~~v~~~~~~---~~~~~l~~L~~~~~~~ 347 (923)
+..++-+++||.+.-. +....+.+...+.. .+..+|++|. +......+.. ..++++...+.++...
T Consensus 96 l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~ 170 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILE 170 (178)
T ss_dssp HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHH
T ss_pred cccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHH
Confidence 6677889999994212 22334445555544 3444667763 4444443322 3578877766555443
No 246
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.07 E-value=0.056 Score=54.88 Aligned_cols=51 Identities=27% Similarity=0.406 Sum_probs=32.0
Q ss_pred CceecchhhHHHHHHHHhcCCC------CCCCCCEEEEEEecCCChHHHHHHHHhcC
Q 039167 177 SEIFGRKDEKNELVDRLICENS------IEQKGPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.+++|.++.+.++.+....-.. ..-.-.+-+.|+|++|+||||||+.++..
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3588887666655443321000 00001122899999999999999999884
No 247
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.00 E-value=0.012 Score=70.54 Aligned_cols=157 Identities=13% Similarity=0.143 Sum_probs=84.1
Q ss_pred CceecchhhHHHHHHHHhc----CC---CCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHH
Q 039167 177 SEIFGRKDEKNELVDRLIC----EN---SIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEF 249 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~----~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 249 (923)
.+++|.+..++++.+++.. .+ ...-.....|.|+|++|+||||||+.+.+. ....| +.++.+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~~----- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE----- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHHH-----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEchH-----
Confidence 4589999988888887643 10 001123457999999999999999999883 33222 2332211
Q ss_pred HHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCceEEEecCCCCCC-------hh----hHHHhHHhhhcC--CCCcEE
Q 039167 250 RIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKKLLLVLDDVWNEN-------FH----KWEQFNNCLKNC--LYGSKI 316 (923)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------~~----~~~~l~~~l~~~--~~gs~i 316 (923)
+..... ......+...+.........++++|++...- .. ....+...+... ..+..+
T Consensus 274 ---------l~~~~~-g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~v 343 (806)
T 1ypw_A 274 ---------IMSKLA-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp ---------HSSSST-THHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEE
T ss_pred ---------hhhhhh-hhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEE
Confidence 111000 0111122233333344567899999983210 00 112233333322 224456
Q ss_pred EEEecchH-HHHHh---cc-cceEeCCCCChHHHHHHHHHhh
Q 039167 317 LITTRKEA-VARIM---GS-TNIISVNVLSGMECWLVFESLA 353 (923)
Q Consensus 317 ivTtR~~~-v~~~~---~~-~~~~~l~~L~~~~~~~lf~~~a 353 (923)
|.||...+ +...+ +. ...+.+...+.++-.+++...+
T Consensus 344 I~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred ecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 66666532 21111 11 2457788888888888887654
No 248
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.87 E-value=0.027 Score=56.30 Aligned_cols=115 Identities=18% Similarity=0.141 Sum_probs=60.5
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCC-------------------
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLP------------------- 264 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------------------- 264 (923)
-.+++|+|++|+|||||++.+..... ..=..++|+.... ....+...+. .++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCc
Confidence 35899999999999999999885321 1112455655433 3333333322 3321100
Q ss_pred ----CCcCHHHHHHHHHHHhc-CCce--EEEecCCCCC---ChhhHHHhHHhhhcC--CCCcEEEEEecch
Q 039167 265 ----NFVEFQSLMQHIQKHVA-GKKL--LLVLDDVWNE---NFHKWEQFNNCLKNC--LYGSKILITTRKE 323 (923)
Q Consensus 265 ----~~~~~~~~~~~l~~~l~-~kr~--LlVlDdv~~~---~~~~~~~l~~~l~~~--~~gs~iivTtR~~ 323 (923)
...+.++....+.+.+. .+.- +||+|..-.. +......+...+... ..|.-||++|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 11144555555554442 2333 9999988421 222333333333321 2477889988865
No 249
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.81 E-value=0.018 Score=61.92 Aligned_cols=45 Identities=27% Similarity=0.247 Sum_probs=32.1
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcC
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.+++|.+..+..+....... ...-+.|+|++|+|||++|+.+.+.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~------~~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDP------GIGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCG------GGCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCC------CCceEEEECCCCccHHHHHHHHHHh
Confidence 35899988666554444322 1123889999999999999999873
No 250
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.80 E-value=0.024 Score=60.21 Aligned_cols=84 Identities=23% Similarity=0.211 Sum_probs=54.4
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCC-----CCCcCHHHHHHHHH
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCL-----PNFVEFQSLMQHIQ 277 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 277 (923)
.-.++.|+|++|+||||||.++... ....=..++|++....++.. .++.++... ....+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 4579999999999999999988863 22222346788877766654 344454321 12234555555555
Q ss_pred HHhc-CCceEEEecCCC
Q 039167 278 KHVA-GKKLLLVLDDVW 293 (923)
Q Consensus 278 ~~l~-~kr~LlVlDdv~ 293 (923)
..++ .+.-++|+|.+.
T Consensus 133 ~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHTSCCSEEEEECTT
T ss_pred HHhhhcCCCeEEehHhh
Confidence 5554 556689999874
No 251
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.80 E-value=0.12 Score=48.79 Aligned_cols=20 Identities=35% Similarity=0.674 Sum_probs=18.7
Q ss_pred EEEEEEecCCChHHHHHHHH
Q 039167 205 HIISLVGMGGIGKTTLAQFA 224 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v 224 (923)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 252
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.77 E-value=0.13 Score=55.58 Aligned_cols=80 Identities=6% Similarity=0.123 Sum_probs=41.4
Q ss_pred ccccCCceEEEeCCCCCCCccchHHhhcCCcccEEeccccCCcccccccccccc-cccCCCCCcEEeccCCCCccccchh
Q 039167 527 IEALRGLRSLLLESTKHSSVILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPT-NIEKLLHLKYLNLANQMEIERLPET 605 (923)
Q Consensus 527 ~~~~~~Lr~L~l~~~~~~~~~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~ 605 (923)
+....+|+++.+... +..+ -...|.+|.+|+.+.|..+ +..++. .+.++ .|+.+.+..+ +..++..
T Consensus 42 ~~~~~~i~~v~ip~~-vt~I-g~~aF~~C~~L~~I~lp~~--------v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~ 108 (379)
T 4h09_A 42 YKDRDRISEVRVNSG-ITSI-GEANFNSCYNMTKVTVAST--------VTSIGDGAFADT-KLQSYTGMER--VKKFGDY 108 (379)
T ss_dssp GGGGGGCSEEEECTT-EEEE-CTTTTTTCTTCCEEEECTT--------CCEECTTTTTTC-CCCEEEECTT--CCEECTT
T ss_pred cccccCCEEEEeCCC-ccCh-HHHHhhCCCCCCEEEeCCc--------ceEechhhhcCC-CCceEECCce--eeEeccc
Confidence 344556777766542 1221 2344777777777777532 334432 23333 4555555433 4555543
Q ss_pred hhCCCCCcEEecCC
Q 039167 606 LCELYNLEHLNVNC 619 (923)
Q Consensus 606 i~~L~~L~~L~L~~ 619 (923)
.-...+|+.+.+..
T Consensus 109 aF~~~~L~~i~lp~ 122 (379)
T 4h09_A 109 VFQGTDLDDFEFPG 122 (379)
T ss_dssp TTTTCCCSEEECCT
T ss_pred eeccCCcccccCCC
Confidence 33334677777654
No 253
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.77 E-value=0.11 Score=51.49 Aligned_cols=55 Identities=11% Similarity=0.091 Sum_probs=33.9
Q ss_pred HHHHHHhcCCceEEEecCCCCC-ChhhHHHhHHh-hhcCCCCcEEEEEecchHHHHH
Q 039167 274 QHIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNC-LKNCLYGSKILITTRKEAVARI 328 (923)
Q Consensus 274 ~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~-l~~~~~gs~iivTtR~~~v~~~ 328 (923)
-.+.+.+-.++-+++||+.-.. +...-..+... +.....|..||++|.+.+.+..
T Consensus 139 v~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~ 195 (229)
T 2pze_A 139 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK 195 (229)
T ss_dssp HHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHH
T ss_pred HHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHh
Confidence 3466677788889999987332 23334445443 2332346678899988766543
No 254
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.73 E-value=0.048 Score=60.79 Aligned_cols=175 Identities=15% Similarity=0.138 Sum_probs=89.2
Q ss_pred CceecchhhHHHHHHH---HhcCCCC---CCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHH
Q 039167 177 SEIFGRKDEKNELVDR---LICENSI---EQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFR 250 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~---L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 250 (923)
.+++|.++.+.++.+. +...... .-.-.+-+.|+|++|+||||||+.++.. ... ..+.++.+.-.+.
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~--~~~---~~i~i~g~~~~~~-- 103 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--ARV---PFITASGSDFVEM-- 103 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH--TTC---CEEEEEGGGGTSS--
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEehhHHHHh--
Confidence 4688988776666554 3221100 0011234899999999999999999983 222 2233433221100
Q ss_pred HHHHHHHHHhCCCCCCcCHHHHHHHHHHHhc----CCceEEEecCCCCCC----------hhhH----HHhHHhhhcCC-
Q 039167 251 IARAIIEALTGCLPNFVEFQSLMQHIQKHVA----GKKLLLVLDDVWNEN----------FHKW----EQFNNCLKNCL- 311 (923)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~kr~LlVlDdv~~~~----------~~~~----~~l~~~l~~~~- 311 (923)
. .......+...++ ....++++|++.... .+.+ .++...+..+.
T Consensus 104 ---------------~--~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~ 166 (499)
T 2dhr_A 104 ---------------F--VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 166 (499)
T ss_dssp ---------------C--TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS
T ss_pred ---------------h--hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc
Confidence 0 0111122333332 234799999984210 1122 22333333222
Q ss_pred -CCcEEEEEecchHHHHH-h----cccceEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCCh
Q 039167 312 -YGSKILITTRKEAVARI-M----GSTNIISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLP 380 (923)
Q Consensus 312 -~gs~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlP 380 (923)
.+..|+.||...++... + .-...+.+...+.++-.+++..++-... ...... ...|++.+.|..
T Consensus 167 ~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~-l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 167 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP-LAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp SCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSC-CCCSST----THHHHTTSCSCC
T ss_pred CccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCC-CChHHH----HHHHHHhcCCCC
Confidence 24456666666554221 1 1134788888888888888876542211 111111 345677777754
No 255
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.63 E-value=0.064 Score=53.66 Aligned_cols=53 Identities=11% Similarity=0.130 Sum_probs=32.6
Q ss_pred HHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhh---cCCCCcEEEEEecchHHHH
Q 039167 275 HIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLK---NCLYGSKILITTRKEAVAR 327 (923)
Q Consensus 275 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~---~~~~gs~iivTtR~~~v~~ 327 (923)
.+.+.+-.++-+++||+.-.. +...-..+...+. ....|..||++|.+.+.+.
T Consensus 137 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~ 193 (237)
T 2cbz_A 137 SLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP 193 (237)
T ss_dssp HHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG
T ss_pred HHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH
Confidence 456666777889999987332 2333444555552 2234677888888765543
No 256
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.50 E-value=0.017 Score=55.10 Aligned_cols=115 Identities=19% Similarity=0.079 Sum_probs=60.5
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCC---cccHHHHHHHHHHHHh----CC--CCCCcC-------
Q 039167 205 HIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSD---PFDEFRIARAIIEALT----GC--LPNFVE------- 268 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~---~~~~~~~~~~i~~~l~----~~--~~~~~~------- 268 (923)
..|-|++..|.||||.|-...- +...+=-.+.++.+-+ ......++..+. +. +. ..+..+
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~--v~~~~~g~gf~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHG--VEFQVMATGFTWETQNREADTAA 104 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGT--CEEEECCTTCCCCGGGHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCC--cEEEEcccccccCCCCcHHHHHH
Confidence 4567777777999999966654 2222222344444333 223333333321 00 00 001111
Q ss_pred HHHHHHHHHHHhcCCc-eEEEecCCCC---CChhhHHHhHHhhhcCCCCcEEEEEecch
Q 039167 269 FQSLMQHIQKHVAGKK-LLLVLDDVWN---ENFHKWEQFNNCLKNCLYGSKILITTRKE 323 (923)
Q Consensus 269 ~~~~~~~l~~~l~~kr-~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 323 (923)
.........+.+.+.+ =|||||++-. -..-..+.+...+.......-||+|+|..
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 1122233444554444 4999999821 11234566777777666677899999984
No 257
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.49 E-value=0.028 Score=56.64 Aligned_cols=49 Identities=16% Similarity=0.165 Sum_probs=33.5
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCccccc----ccceEEEEEeCCcccHHHH
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEK----NFEKRIWVCVSDPFDEFRI 251 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~ 251 (923)
.-.++.|+|++|+|||||+..+........ .-..++|+.....++...+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~ 75 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL 75 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH
Confidence 345899999999999999998876311111 1246788887765554443
No 258
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.37 E-value=0.061 Score=55.48 Aligned_cols=51 Identities=27% Similarity=0.406 Sum_probs=32.3
Q ss_pred CceecchhhHHHHHHHHhcCCC------CCCCCCEEEEEEecCCChHHHHHHHHhcC
Q 039167 177 SEIFGRKDEKNELVDRLICENS------IEQKGPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.+++|.++.++++.+....-.. ..-.-.+-+.|+|+.|+||||||+.+...
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH
Confidence 4688887766665543321100 00001122899999999999999999884
No 259
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.31 E-value=0.041 Score=58.80 Aligned_cols=84 Identities=20% Similarity=0.132 Sum_probs=53.9
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCC-----CCCcCHHHHHHHHH
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCL-----PNFVEFQSLMQHIQ 277 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 277 (923)
.-.++.|.|.+|+||||||.++... ....-..++|++....++.. .++.++... ....+.++....+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 3458899999999999999888763 22222368899988776654 234443321 11234566666666
Q ss_pred HHhc-CCceEEEecCCC
Q 039167 278 KHVA-GKKLLLVLDDVW 293 (923)
Q Consensus 278 ~~l~-~kr~LlVlDdv~ 293 (923)
+..+ .+--+||+|.+.
T Consensus 146 ~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHTTTCCSEEEEECTT
T ss_pred HHHhcCCCCEEEEeChH
Confidence 6554 345699999883
No 260
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.28 E-value=0.051 Score=57.45 Aligned_cols=57 Identities=23% Similarity=0.244 Sum_probs=38.6
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccc----cceEEEEEeCCcccHHHHHHHHHHHHh
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKN----FEKRIWVCVSDPFDEFRIARAIIEALT 260 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~~~~~~i~~~l~ 260 (923)
.-.++.|+|.+|+||||||.++......... -..++|++....++...+.. +++.++
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g 166 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALG 166 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhC
Confidence 3458999999999999999888753211110 24678998888777666553 344443
No 261
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.28 E-value=0.019 Score=55.96 Aligned_cols=42 Identities=24% Similarity=0.349 Sum_probs=33.1
Q ss_pred chhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhc
Q 039167 182 RKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 182 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
|++.++.+.+.+.... .....+|+|+|+.|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5566777888776532 23568999999999999999999876
No 262
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.21 E-value=0.12 Score=51.83 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=21.3
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.-.+++|+|+.|+|||||.+.+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999965
No 263
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.18 E-value=0.062 Score=57.22 Aligned_cols=56 Identities=20% Similarity=0.190 Sum_probs=38.7
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCccccc----ccceEEEEEeCCcccHHHHHHHHHHHH
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEK----NFEKRIWVCVSDPFDEFRIARAIIEAL 259 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l 259 (923)
.-.++.|+|.+|+||||||.++........ .-..++|++....++...+.. ++..+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~ 180 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRF 180 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHc
Confidence 457999999999999999988876321111 224678998888777665543 33444
No 264
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.15 E-value=0.04 Score=57.21 Aligned_cols=24 Identities=33% Similarity=0.293 Sum_probs=21.4
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
...+++++|.+|+||||++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456999999999999999988876
No 265
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.14 E-value=0.042 Score=58.09 Aligned_cols=57 Identities=19% Similarity=0.240 Sum_probs=39.2
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCccccc---------cc-----ceEEEEEeCCcccHHHHHHHHHHHHh
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEK---------NF-----EKRIWVCVSDPFDEFRIARAIIEALT 260 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~~s~~~~~~~~~~~i~~~l~ 260 (923)
.-.++.|+|.+|+||||||.++........ .. ..++|++....++...+.+. ++.++
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~g 167 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHAG 167 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHcC
Confidence 457999999999999999988875321111 11 46789988887777666543 44443
No 266
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.11 E-value=0.14 Score=51.43 Aligned_cols=53 Identities=9% Similarity=0.267 Sum_probs=32.1
Q ss_pred HHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcCCCCcEEEEEecchHHHH
Q 039167 275 HIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNCLYGSKILITTRKEAVAR 327 (923)
Q Consensus 275 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 327 (923)
.+.+.+-.++-+++||..-.. +...-..+...+.....|..||++|.+...+.
T Consensus 155 ~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~ 208 (247)
T 2ff7_A 155 AIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK 208 (247)
T ss_dssp HHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence 456666777889999987432 22333344444432223667888888866554
No 267
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.99 E-value=0.061 Score=55.33 Aligned_cols=82 Identities=10% Similarity=0.122 Sum_probs=52.6
Q ss_pred EEEEEecCCChHHHHHHHHhcCcccccc--cceEEEEEeCCcccHHHHHHHHHHHHhCCCC-----CCcCHHHH-HHHHH
Q 039167 206 IISLVGMGGIGKTTLAQFAYNNGDVEKN--FEKRIWVCVSDPFDEFRIARAIIEALTGCLP-----NFVEFQSL-MQHIQ 277 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~-~~~l~ 277 (923)
++-|.|++|+||||||.++... .... =..++|++....++.. .++.++.... ...+.++. ...+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 7899999999999999877653 2222 2367899888877754 2566654321 12344554 33333
Q ss_pred HH--h-cCCceEEEecCCCC
Q 039167 278 KH--V-AGKKLLLVLDDVWN 294 (923)
Q Consensus 278 ~~--l-~~kr~LlVlDdv~~ 294 (923)
.. + .++.-+||+|-|..
T Consensus 103 ~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTT
T ss_pred HHHHhhccCceEEEEecccc
Confidence 32 2 45678999998843
No 268
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.94 E-value=0.41 Score=51.68 Aligned_cols=80 Identities=6% Similarity=0.140 Sum_probs=53.2
Q ss_pred hhcCCcccEEeccccCCcccccccccccc-cccCCCCCcEEeccCCCCccccch-hhhCCCCCcEEecCCCccccccCcc
Q 039167 552 FDKLTCLRALKLEVHNERLPEDFIKEVPT-NIEKLLHLKYLNLANQMEIERLPE-TLCELYNLEHLNVNCCVKLRELPQG 629 (923)
Q Consensus 552 ~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~ 629 (923)
+....+|+.+.+.. .+..+++ .+.++.+|+.+.|..+ ++.++. .+.++ +|+.+.+.. .+..++..
T Consensus 42 ~~~~~~i~~v~ip~--------~vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~ 108 (379)
T 4h09_A 42 YKDRDRISEVRVNS--------GITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGME--RVKKFGDY 108 (379)
T ss_dssp GGGGGGCSEEEECT--------TEEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECT--TCCEECTT
T ss_pred cccccCCEEEEeCC--------CccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCc--eeeEeccc
Confidence 55667788888863 3666654 5788999999999754 677764 34454 677777654 25666655
Q ss_pred ccCCCCCCEEeCCCC
Q 039167 630 IGRLRKLMYLDNECT 644 (923)
Q Consensus 630 i~~L~~L~~L~l~~~ 644 (923)
.-...+|+.+.+..+
T Consensus 109 aF~~~~L~~i~lp~~ 123 (379)
T 4h09_A 109 VFQGTDLDDFEFPGA 123 (379)
T ss_dssp TTTTCCCSEEECCTT
T ss_pred eeccCCcccccCCCc
Confidence 444557888887643
No 269
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.93 E-value=0.056 Score=56.48 Aligned_cols=45 Identities=20% Similarity=0.297 Sum_probs=32.4
Q ss_pred ecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhc
Q 039167 180 FGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 180 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
+|....+..+...+.... ......+|+|.|+.|+||||+++.+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 344455555555555442 245678999999999999999998865
No 270
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.92 E-value=0.08 Score=56.41 Aligned_cols=90 Identities=23% Similarity=0.201 Sum_probs=50.9
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCccccccc----ceEEEEEeCCcccHHHHHHHHHHHHhCC------------CCCC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNF----EKRIWVCVSDPFDEFRIARAIIEALTGC------------LPNF 266 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~~s~~~~~~~~~~~i~~~l~~~------------~~~~ 266 (923)
.-.++.|+|+.|+|||||+..+.......... ..++|++....+....+ ..+++..+.. ....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 45799999999999999999987632111111 23488887665543333 2233332211 0000
Q ss_pred cCHHHHHHHHHHHhc------CCceEEEecCCC
Q 039167 267 VEFQSLMQHIQKHVA------GKKLLLVLDDVW 293 (923)
Q Consensus 267 ~~~~~~~~~l~~~l~------~kr~LlVlDdv~ 293 (923)
....+....+...+. .+.-+||+|.+-
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~t 241 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 241 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCch
Confidence 112223334444443 467899999884
No 271
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.92 E-value=0.11 Score=54.13 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=21.6
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.-.+++|+|.+|+|||||++.+...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3458999999999999999988764
No 272
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.80 E-value=0.16 Score=51.17 Aligned_cols=123 Identities=15% Similarity=0.182 Sum_probs=63.6
Q ss_pred EEEEEEecCCChHHHHHHHHhcCccc-ccc---cceEEEEEeCC----cccH----------------------HHHHHH
Q 039167 205 HIISLVGMGGIGKTTLAQFAYNNGDV-EKN---FEKRIWVCVSD----PFDE----------------------FRIARA 254 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~---F~~~~wv~~s~----~~~~----------------------~~~~~~ 254 (923)
.+++|+|+.|+|||||.+.+..-... .+. ...+.++.-.. ..+. .+....
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~ 111 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQ 111 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHH
Confidence 58999999999999999999764211 010 01122322100 0011 112233
Q ss_pred HHHHHhCCC-----CCCcCH-HHHHHHHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcC--CCCcEEEEEecchHH
Q 039167 255 IIEALTGCL-----PNFVEF-QSLMQHIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNC--LYGSKILITTRKEAV 325 (923)
Q Consensus 255 i~~~l~~~~-----~~~~~~-~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtR~~~v 325 (923)
+++.++... +..-+. +...-.+.+.+..++-+++||..-.. |...-..+...+... ..|.-||++|.+.+.
T Consensus 112 ~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~ 191 (253)
T 2nq2_C 112 ALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ 191 (253)
T ss_dssp HHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHH
T ss_pred HHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 444443211 111112 22233456667778889999987332 233334444444332 226678999988665
Q ss_pred HH
Q 039167 326 AR 327 (923)
Q Consensus 326 ~~ 327 (923)
+.
T Consensus 192 ~~ 193 (253)
T 2nq2_C 192 VV 193 (253)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 273
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.79 E-value=0.051 Score=57.91 Aligned_cols=83 Identities=16% Similarity=0.146 Sum_probs=51.1
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCC-----CCcCHHHHHHHHH
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLP-----NFVEFQSLMQHIQ 277 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 277 (923)
.-.++.|.|.+|+||||||.++... ....=..++|++....++... +..++.... ...+.++....+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 3468999999999999999888763 222223688998877776432 344433211 1123444444444
Q ss_pred HHh-cCCceEEEecCC
Q 039167 278 KHV-AGKKLLLVLDDV 292 (923)
Q Consensus 278 ~~l-~~kr~LlVlDdv 292 (923)
+.. ..+.-+||+|.+
T Consensus 135 ~l~~~~~~~lVVIDsl 150 (356)
T 1u94_A 135 ALARSGAVDVIVVDSV 150 (356)
T ss_dssp HHHHHTCCSEEEEECG
T ss_pred HHHhccCCCEEEEcCH
Confidence 433 244568899987
No 274
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.74 E-value=0.19 Score=50.91 Aligned_cols=51 Identities=10% Similarity=0.129 Sum_probs=32.3
Q ss_pred HHHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcCCCCcEEEEEecchHHH
Q 039167 274 QHIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNCLYGSKILITTRKEAVA 326 (923)
Q Consensus 274 ~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 326 (923)
-.+.+.+..++-+++||.--.. +...-..+...+..... .||++|.+.+.+
T Consensus 137 v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~ 188 (263)
T 2pjz_A 137 VRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDML 188 (263)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGG
T ss_pred HHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHH
Confidence 3466677788889999987332 33444455555554433 688888875544
No 275
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.74 E-value=0.071 Score=56.73 Aligned_cols=84 Identities=19% Similarity=0.127 Sum_probs=52.6
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCC-----CCcCHHHHHHHHH
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLP-----NFVEFQSLMQHIQ 277 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 277 (923)
.-.++.|+|.+|+||||||.++... ....=..++|++....++.. .++.++.... ...+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 3468999999999999999888753 22222357889887766643 2344442211 1224455555555
Q ss_pred HHhc-CCceEEEecCCC
Q 039167 278 KHVA-GKKLLLVLDDVW 293 (923)
Q Consensus 278 ~~l~-~kr~LlVlDdv~ 293 (923)
...+ .+.-+||+|.+-
T Consensus 133 ~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHTTTCCSEEEEECGG
T ss_pred HHHhcCCCCEEEEcChH
Confidence 4443 346689999873
No 276
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.64 E-value=0.023 Score=55.75 Aligned_cols=39 Identities=28% Similarity=0.366 Sum_probs=28.8
Q ss_pred hHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcC
Q 039167 185 EKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 185 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
-.++|.+.+... .....+|+|+|+.|.|||||++.+..-
T Consensus 7 ~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 7 LCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345555555432 235679999999999999999998763
No 277
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.60 E-value=0.3 Score=50.26 Aligned_cols=54 Identities=11% Similarity=0.084 Sum_probs=33.3
Q ss_pred HHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhh-hcCCCCcEEEEEecchHHHHH
Q 039167 275 HIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCL-KNCLYGSKILITTRKEAVARI 328 (923)
Q Consensus 275 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l-~~~~~gs~iivTtR~~~v~~~ 328 (923)
.+.+.+-.++-+++||..-.. +...-..+...+ .....|..||++|.+.+....
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~ 224 (290)
T 2bbs_A 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK 224 (290)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHH
T ss_pred HHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHc
Confidence 456677778889999987332 233334454432 222346678999988766543
No 278
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.59 E-value=0.072 Score=54.12 Aligned_cols=114 Identities=11% Similarity=0.099 Sum_probs=58.1
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAG 282 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 282 (923)
.-.+++|+|+.|+|||||.+.+..- ....+...+++.-. +... +.+....-+....... +.......+.+.+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~-~i~~--~~~~~~~~v~q~~~gl-~~~~l~~~la~aL~~ 97 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIED-PIEY--VFKHKKSIVNQREVGE-DTKSFADALRAALRE 97 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEES-SCCS--CCCCSSSEEEEEEBTT-TBSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCC-ccee--ecCCcceeeeHHHhCC-CHHHHHHHHHHHHhh
Confidence 4469999999999999999988762 22222333433211 1000 0000000000000000 001234566677766
Q ss_pred CceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecchHHHH
Q 039167 283 KKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRKEAVAR 327 (923)
Q Consensus 283 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 327 (923)
++=+|++|..- +.+....+.... ..|.-|++||...++..
T Consensus 98 ~p~illlDEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~~~~ 137 (261)
T 2eyu_A 98 DPDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTAID 137 (261)
T ss_dssp CCSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEECCSSHHH
T ss_pred CCCEEEeCCCC--CHHHHHHHHHHH---ccCCEEEEEeCcchHHH
Confidence 78899999984 333333322222 24667899998766443
No 279
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.52 E-value=0.47 Score=51.66 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=21.4
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
...+|.++|.+|+||||++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999987765
No 280
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.35 E-value=0.026 Score=54.44 Aligned_cols=25 Identities=40% Similarity=0.510 Sum_probs=22.2
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.-.+++|+|+.|+|||||++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999873
No 281
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.33 E-value=0.0071 Score=58.03 Aligned_cols=22 Identities=23% Similarity=0.054 Sum_probs=18.6
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039167 205 HIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
+++.|+|+.|+||||++..+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999965554
No 282
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.22 E-value=0.16 Score=51.12 Aligned_cols=37 Identities=19% Similarity=0.140 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhc
Q 039167 186 KNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 186 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
..-+..|+.... +....|.++|++|.|||.+|..+.+
T Consensus 90 ~~~l~~~l~~~~----~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 90 ASVFLGWATKKF----GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHHTTCS----TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhCCC----CCCcEEEEECCCCCCHHHHHHHHHh
Confidence 344666664321 2345799999999999999999987
No 283
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.19 E-value=0.051 Score=57.40 Aligned_cols=54 Identities=13% Similarity=-0.035 Sum_probs=34.5
Q ss_pred HHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCccc-ccccceEEEEEeCCcc
Q 039167 187 NELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDV-EKNFEKRIWVCVSDPF 246 (923)
Q Consensus 187 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~s~~~ 246 (923)
-++++.+..-. .-..++|+|..|+|||||++.+.+.... ...++ ++++-+++..
T Consensus 162 iraID~~~pi~-----rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~ 216 (422)
T 3ice_A 162 ARVLDLASPIG-----RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERP 216 (422)
T ss_dssp HHHHHHHSCCB-----TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCH
T ss_pred ceeeeeeeeec-----CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCCh
Confidence 45566665432 3458999999999999999988763111 11233 3456666554
No 284
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.18 E-value=0.021 Score=54.41 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039167 205 HIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.+|.|+|++|+||||+|+.+.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 285
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.05 E-value=0.038 Score=57.12 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=22.9
Q ss_pred CCCEEEEEEecCCChHHHHHHHHhcC
Q 039167 202 KGPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
....+|+|+|..|+||||||+.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999988763
No 286
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.02 E-value=0.21 Score=52.93 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcC--CCCcEEEEEecchHHHHH
Q 039167 273 MQHIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNC--LYGSKILITTRKEAVARI 328 (923)
Q Consensus 273 ~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtR~~~v~~~ 328 (923)
.-.|.+.|..++-+|++|.--.. +...-..+...+..- ..|.-||++|.+-+++..
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~ 229 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKR 229 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence 34467778888999999976321 223333444444432 236779999998776654
No 287
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.98 E-value=0.026 Score=53.38 Aligned_cols=22 Identities=27% Similarity=0.129 Sum_probs=20.2
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039167 205 HIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999976
No 288
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.92 E-value=0.03 Score=53.40 Aligned_cols=22 Identities=36% Similarity=0.410 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039167 205 HIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999986
No 289
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.87 E-value=0.052 Score=56.17 Aligned_cols=40 Identities=28% Similarity=0.395 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhc
Q 039167 186 KNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 186 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.++++..+..... ......+|.|.|++|+||||+|+.+..
T Consensus 16 ~~~~~~~~l~~~~-~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 16 LNDNLEELIQGKK-AVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHTTCC-CCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHhcccc-CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4444444443321 234568999999999999999999976
No 290
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.86 E-value=0.18 Score=52.33 Aligned_cols=24 Identities=29% Similarity=0.587 Sum_probs=21.2
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.-.+++|+|+.|.|||||++.+..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 345899999999999999999965
No 291
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.85 E-value=0.028 Score=54.71 Aligned_cols=23 Identities=39% Similarity=0.311 Sum_probs=21.1
Q ss_pred CEEEEEEecCCChHHHHHHHHhc
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
..+|.|+|+.|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 292
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.85 E-value=0.42 Score=50.06 Aligned_cols=53 Identities=11% Similarity=0.083 Sum_probs=36.7
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHH
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEAL 259 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 259 (923)
.-.++.|.|.+|+||||+|..+......++ ..++|++.. .+..++...+....
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 346899999999999999988875422222 467777655 45666666666543
No 293
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.81 E-value=0.027 Score=53.78 Aligned_cols=23 Identities=17% Similarity=0.424 Sum_probs=21.0
Q ss_pred CEEEEEEecCCChHHHHHHHHhc
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
-++++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999976
No 294
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.78 E-value=0.039 Score=61.62 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=35.2
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcC
Q 039167 178 EIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.++|+++.++.+...+... .-|.|+|++|+|||+||+.+.+.
T Consensus 23 ~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 4789999888888777543 36889999999999999999984
No 295
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.70 E-value=0.038 Score=53.76 Aligned_cols=25 Identities=32% Similarity=0.369 Sum_probs=22.5
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
...+|+|+|+.|+||||+++.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999873
No 296
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.67 E-value=0.1 Score=57.10 Aligned_cols=87 Identities=20% Similarity=0.188 Sum_probs=48.8
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCccc-HHHHHHHHHHHHh--------CCCCCCcCHHH----
Q 039167 205 HIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFD-EFRIARAIIEALT--------GCLPNFVEFQS---- 271 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~--------~~~~~~~~~~~---- 271 (923)
+.++|+|..|+|||||++.+....... .-+..+++-+++..+ ..+++..+...-. ....+......
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 368999999999999999888742221 224556676766553 3344444432100 00011111111
Q ss_pred HHHHHHHHh---cCCceEEEecCC
Q 039167 272 LMQHIQKHV---AGKKLLLVLDDV 292 (923)
Q Consensus 272 ~~~~l~~~l---~~kr~LlVlDdv 292 (923)
..-.+.+++ +++++|+++||+
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~i 254 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNI 254 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECT
T ss_pred HHHHHHHHHHHhcCCcEEEEeccH
Confidence 011233333 588999999999
No 297
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.63 E-value=0.18 Score=54.44 Aligned_cols=57 Identities=18% Similarity=0.217 Sum_probs=36.2
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccc----cccceEEEEEeCCcccHHHHHHHHHHHHh
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVE----KNFEKRIWVCVSDPFDEFRIARAIIEALT 260 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 260 (923)
.-.++.|+|++|+|||||+..++-..... ..-..++|+.....++...+. .+++.++
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~g 237 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFG 237 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcC
Confidence 34689999999999999999764211111 122457888877666555433 3445444
No 298
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.61 E-value=0.047 Score=58.88 Aligned_cols=50 Identities=26% Similarity=0.275 Sum_probs=35.1
Q ss_pred ceecchhhHHHHHHHHhcC-------C--CCCCCCCEEEEEEecCCChHHHHHHHHhcC
Q 039167 178 EIFGRKDEKNELVDRLICE-------N--SIEQKGPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 178 ~~vGr~~~~~~l~~~L~~~-------~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.++|.+..++.+...+... . .........+.++|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3688888888887766200 0 001123457899999999999999999883
No 299
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.60 E-value=0.27 Score=51.03 Aligned_cols=88 Identities=17% Similarity=0.198 Sum_probs=47.2
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHH--HHHHHHHHHHhCC---CCCCcCHHHH-HHHH
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEF--RIARAIIEALTGC---LPNFVEFQSL-MQHI 276 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~--~~~~~i~~~l~~~---~~~~~~~~~~-~~~l 276 (923)
...++.|+|++|+||||++..++.. ....-..+.++.. +.+... +-+...++..+.. .....+.... ...+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~--l~~~g~kV~lv~~-D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM--FVDEGKSVVLAAA-DTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEE-CTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH--HHhcCCEEEEEcc-ccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 5689999999999999999988763 2222112334433 333322 1123334443321 1111222222 3345
Q ss_pred HHHhcCCceEEEecCCC
Q 039167 277 QKHVAGKKLLLVLDDVW 293 (923)
Q Consensus 277 ~~~l~~kr~LlVlDdv~ 293 (923)
...+..+.-++|+|-.-
T Consensus 180 ~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 180 AHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHTTCSEEEEEECC
T ss_pred HHHHhcCCCEEEEECCC
Confidence 55555566688889663
No 300
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.60 E-value=0.027 Score=53.27 Aligned_cols=22 Identities=36% Similarity=0.398 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039167 205 HIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.+|+|+|+.|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 301
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.55 E-value=0.045 Score=51.87 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.7
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.-.+|+|+|+.|+||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 302
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.54 E-value=0.26 Score=53.62 Aligned_cols=24 Identities=38% Similarity=0.351 Sum_probs=21.2
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
...++.|+|.+|+||||++..+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988876
No 303
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.48 E-value=0.044 Score=52.83 Aligned_cols=24 Identities=38% Similarity=0.466 Sum_probs=21.7
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
...+|.|.|+.|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999976
No 304
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.47 E-value=0.42 Score=50.53 Aligned_cols=56 Identities=11% Similarity=0.221 Sum_probs=33.9
Q ss_pred HHHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcC--CCCcEEEEEecchHHHHHh
Q 039167 274 QHIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNC--LYGSKILITTRKEAVARIM 329 (923)
Q Consensus 274 ~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtR~~~v~~~~ 329 (923)
-.|.+.|-.++-+++||.--.. |...-..+...+..- ..|.-||++|.+...+..+
T Consensus 154 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~ 212 (355)
T 1z47_A 154 VALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEV 212 (355)
T ss_dssp HHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHh
Confidence 3467778888899999976332 223333344444322 1256789999987665543
No 305
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.47 E-value=0.033 Score=53.36 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.8
Q ss_pred CEEEEEEecCCChHHHHHHHHhc
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.+.|.|+|+.|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999986
No 306
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.47 E-value=0.49 Score=51.76 Aligned_cols=41 Identities=32% Similarity=0.441 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCC---CCCCCCEEEEEEecCCChHHHHHHHHhc
Q 039167 186 KNELVDRLICENS---IEQKGPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 186 ~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.+++.+.|..... ......++|.++|.+|+||||++..+..
T Consensus 79 ~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 79 RNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp HHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4455555543211 0123578999999999999999988875
No 307
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.45 E-value=0.056 Score=54.82 Aligned_cols=41 Identities=27% Similarity=0.304 Sum_probs=29.4
Q ss_pred hHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhc
Q 039167 185 EKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 185 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
..+++++.+..... ......+|.|+|++|+||||+|+.+..
T Consensus 14 ~~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 14 ALARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34445555544322 334568999999999999999999976
No 308
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.42 E-value=0.072 Score=55.97 Aligned_cols=45 Identities=22% Similarity=0.234 Sum_probs=31.6
Q ss_pred ecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhc
Q 039167 180 FGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 180 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
|+.+.-.+++++.+...- ..+....|.|+|+.|+||||+++.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i--~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRI--EDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTT--TTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHh--ccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 344555666666664322 123566799999999999999998877
No 309
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.42 E-value=0.48 Score=50.05 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=33.9
Q ss_pred HHHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcC--CCCcEEEEEecchHHHHHh
Q 039167 274 QHIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNC--LYGSKILITTRKEAVARIM 329 (923)
Q Consensus 274 ~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtR~~~v~~~~ 329 (923)
-.|.+.|-.++-+++||.--.. |...-..+...+..- ..|..||++|.+.+.+..+
T Consensus 136 valAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~ 194 (348)
T 3d31_A 136 VALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIM 194 (348)
T ss_dssp HHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 3467778888899999976332 223333344444322 2366788889887655443
No 310
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.39 E-value=0.04 Score=52.06 Aligned_cols=24 Identities=29% Similarity=0.565 Sum_probs=20.6
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.-.+++|+|+.|+|||||++.++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 346899999999999999997654
No 311
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.36 E-value=0.04 Score=58.71 Aligned_cols=113 Identities=11% Similarity=0.169 Sum_probs=61.2
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGK 283 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 283 (923)
-.+++|+|+.|.||||+.+.+... ........+ +.+.++.... .... ...-.......+.......+...|...
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i-~t~ed~~e~~--~~~~-~~~v~q~~~~~~~~~~~~~La~aL~~~ 196 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHI-LTIEDPIEFV--HESK-KCLVNQREVHRDTLGFSEALRSALRED 196 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEE-EEEESSCCSC--CCCS-SSEEEEEEBTTTBSCHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEE-EEccCcHHhh--hhcc-ccceeeeeeccccCCHHHHHHHHhhhC
Confidence 359999999999999999988762 211111222 1222211100 0000 000000000001122344788888999
Q ss_pred ceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecchHHHH
Q 039167 284 KLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRKEAVAR 327 (923)
Q Consensus 284 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 327 (923)
+=+|++|.+- +.+.++.+..... .|.-||+||...+.+.
T Consensus 197 PdvillDEp~--d~e~~~~~~~~~~---~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 197 PDIILVGEMR--DLETIRLALTAAE---TGHLVFGTLHTTSAAK 235 (356)
T ss_dssp CSEEEESCCC--SHHHHHHHHHHHH---TTCEEEEEESCSSHHH
T ss_pred cCEEecCCCC--CHHHHHHHHHHHh---cCCEEEEEEccChHHH
Confidence 9999999994 3445555444432 3667999998766553
No 312
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.35 E-value=0.042 Score=52.97 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039167 205 HIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.+|.|.|+.|+||||+|+.+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 313
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.32 E-value=0.46 Score=51.76 Aligned_cols=65 Identities=25% Similarity=0.230 Sum_probs=43.7
Q ss_pred HHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCccc-HHHHHHHHHHH
Q 039167 188 ELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFD-EFRIARAIIEA 258 (923)
Q Consensus 188 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~ 258 (923)
+.++.|..-. .-+-++|+|.+|+|||+|+..+.+.. .+.+-+.++++-+++... ..++.+.+.+.
T Consensus 142 r~ID~l~pig-----kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYA-----KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEE-----TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccc-----cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 5566665321 34578999999999999999887731 123345677888887654 45566666544
No 314
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.31 E-value=0.024 Score=55.46 Aligned_cols=105 Identities=15% Similarity=0.190 Sum_probs=54.8
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCC----------CCcCHHHHHH
Q 039167 205 HIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLP----------NFVEFQSLMQ 274 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----------~~~~~~~~~~ 274 (923)
-.|.+.|.||+||||+|..+.... ....++ +.++.+...-+... . ..+..+..... ...+.+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l-~~~G~~-V~v~d~D~q~~~~~-~-al~~gl~~~~~~~~~~~~~~~~e~~l~---- 78 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQ-LRQGVR-VMAGVVETHGRAET-E-ALLNGLPQQPLLRTEYRGMTLEEMDLD---- 78 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH-HHTTCC-EEEEECCCTTCHHH-H-HHHTTSCBCCCEEEEETTEEEEECCHH----
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH-HHCCCC-EEEEEeCCCCChhH-H-HHhcCccccCcceeecCCcccccccHH----
Confidence 458889999999999987776632 223333 33444433222221 1 11121211100 011222
Q ss_pred HHHHHhcCCceEEEecCCCCCC------hhhHHHhHHhhhcCCCCcEEEEEecch
Q 039167 275 HIQKHVAGKKLLLVLDDVWNEN------FHKWEQFNNCLKNCLYGSKILITTRKE 323 (923)
Q Consensus 275 ~l~~~l~~kr~LlVlDdv~~~~------~~~~~~l~~~l~~~~~gs~iivTtR~~ 323 (923)
+.+..+.=++|+|++-..+ ..-|..+...++. |-.|+.|+..+
T Consensus 79 ---~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~s---gidVitT~Nlq 127 (228)
T 2r8r_A 79 ---ALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAA---GIDVYTTVNVQ 127 (228)
T ss_dssp ---HHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHT---TCEEEEEEEGG
T ss_pred ---HHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcC---CCCEEEEcccc
Confidence 2222356799999875321 2357777665543 55688888744
No 315
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.31 E-value=0.039 Score=53.69 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.7
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
...+|+|+|+.|+||||+++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999986
No 316
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.31 E-value=0.029 Score=53.53 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.7
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039167 205 HIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
+.|.|+|+.|+|||||++++..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999876
No 317
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.27 E-value=0.05 Score=53.37 Aligned_cols=24 Identities=42% Similarity=0.501 Sum_probs=21.8
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
...+|+|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999977
No 318
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.26 E-value=0.045 Score=52.63 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=20.1
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039167 205 HIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 319
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.26 E-value=0.055 Score=52.95 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=22.3
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
...+|+|+|+.|+||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999999873
No 320
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.26 E-value=0.05 Score=52.93 Aligned_cols=25 Identities=40% Similarity=0.545 Sum_probs=22.8
Q ss_pred CCCEEEEEEecCCChHHHHHHHHhc
Q 039167 202 KGPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
....+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999987
No 321
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.23 E-value=0.043 Score=53.79 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=22.1
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
...+|+|+|+.|+|||||++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3468999999999999999999874
No 322
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.19 E-value=0.046 Score=53.36 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=20.9
Q ss_pred CEEEEEEecCCChHHHHHHHHhc
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
-.+++|+|+.|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 35899999999999999999976
No 323
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.15 E-value=0.15 Score=53.80 Aligned_cols=106 Identities=12% Similarity=0.026 Sum_probs=57.0
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhcCCc
Q 039167 205 HIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLPNFVEFQSLMQHIQKHVAGKK 284 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 284 (923)
.+++|+|+.|.|||||++.+..-. ..-...+.+.-......... + +.+..- .+ ........+...|..++
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~---~~~~g~i~i~~~~e~~~~~~-~---~~i~~~-~g--gg~~~r~~la~aL~~~p 241 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI---PKEERIISIEDTEEIVFKHH-K---NYTQLF-FG--GNITSADCLKSCLRMRP 241 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS---CTTSCEEEEESSCCCCCSSC-S---SEEEEE-CB--TTBCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---cCCCcEEEECCeeccccccc-h---hEEEEE-eC--CChhHHHHHHHHhhhCC
Confidence 479999999999999999998732 12234455442221110000 0 000000 00 11233445677788888
Q ss_pred eEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecchHH
Q 039167 285 LLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRKEAV 325 (923)
Q Consensus 285 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v 325 (923)
-+|++|.+-. .+.++.+.. +..+ +.-+|+||.....
T Consensus 242 ~ilildE~~~--~e~~~~l~~-~~~g--~~tvi~t~H~~~~ 277 (330)
T 2pt7_A 242 DRIILGELRS--SEAYDFYNV-LCSG--HKGTLTTLHAGSS 277 (330)
T ss_dssp SEEEECCCCS--THHHHHHHH-HHTT--CCCEEEEEECSSH
T ss_pred CEEEEcCCCh--HHHHHHHHH-HhcC--CCEEEEEEcccHH
Confidence 9999999844 244444433 3322 2226777776543
No 324
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.12 E-value=0.035 Score=53.29 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.3
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039167 205 HIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 325
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.11 E-value=0.24 Score=54.25 Aligned_cols=99 Identities=18% Similarity=0.114 Sum_probs=59.6
Q ss_pred HHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCccc-HHHHHHHHHHHHhCC----
Q 039167 188 ELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFD-EFRIARAIIEALTGC---- 262 (923)
Q Consensus 188 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~---- 262 (923)
+.++.|..- ..-+-++|+|.+|+|||+|+..+.+.. .+.+-+.++++-+++... ..++.+.+.+.=...
T Consensus 154 rvID~l~pi-----gkGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l 227 (498)
T 1fx0_B 154 KVVNLLAPY-----RRGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNI 227 (498)
T ss_dssp TTHHHHSCC-----CTTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTT
T ss_pred eEeeeeccc-----ccCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccc
Confidence 445666432 134568999999999999998887731 223456788888887664 445565555431111
Q ss_pred ----------CCCCcC-----HHHHHHHHHHHhc---CCceEEEecCC
Q 039167 263 ----------LPNFVE-----FQSLMQHIQKHVA---GKKLLLVLDDV 292 (923)
Q Consensus 263 ----------~~~~~~-----~~~~~~~l~~~l~---~kr~LlVlDdv 292 (923)
..+..- .-...-.+.++++ ++.+|+++||+
T Consensus 228 ~~~rtvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 228 AESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp CCCCEEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 000000 1112233455554 58999999999
No 326
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.04 E-value=0.042 Score=51.65 Aligned_cols=24 Identities=33% Similarity=0.326 Sum_probs=20.9
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
...+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999977
No 327
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.03 E-value=0.037 Score=53.93 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=21.0
Q ss_pred CEEEEEEecCCChHHHHHHHHhc
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
..+|+|.|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999977
No 328
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.98 E-value=0.06 Score=52.45 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=22.4
Q ss_pred CCCEEEEEEecCCChHHHHHHHHhc
Q 039167 202 KGPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
....+|+|.|+.|+||||+|+.+.+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999986
No 329
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.97 E-value=0.31 Score=51.40 Aligned_cols=39 Identities=21% Similarity=0.054 Sum_probs=29.2
Q ss_pred hhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcC
Q 039167 184 DEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 184 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.---++++.|..-. .-+-++|+|.+|+|||+|+.++.+.
T Consensus 160 ~tGiraID~l~Pig-----rGQR~lIfg~~g~GKT~Ll~~Ia~~ 198 (427)
T 3l0o_A 160 IYSTRLIDLFAPIG-----KGQRGMIVAPPKAGKTTILKEIANG 198 (427)
T ss_dssp CHHHHHHHHHSCCB-----TTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred hccchhhhhccccc-----CCceEEEecCCCCChhHHHHHHHHH
Confidence 33456778775432 3457899999999999999988873
No 330
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.97 E-value=0.049 Score=53.15 Aligned_cols=22 Identities=41% Similarity=0.472 Sum_probs=20.1
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039167 205 HIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999976
No 331
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.94 E-value=0.047 Score=52.55 Aligned_cols=22 Identities=32% Similarity=0.662 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039167 205 HIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.+|.|.|+.|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 332
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.93 E-value=0.051 Score=52.02 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.5
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
....|+|+|+.|+||||+|+.+.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 333
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.92 E-value=0.05 Score=55.15 Aligned_cols=22 Identities=23% Similarity=0.128 Sum_probs=20.3
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039167 205 HIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.+|.|+|+.|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999976
No 334
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.91 E-value=0.055 Score=52.90 Aligned_cols=22 Identities=41% Similarity=0.507 Sum_probs=20.3
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039167 205 HIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 335
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.89 E-value=0.17 Score=56.33 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=20.1
Q ss_pred EEEEEecCCChHHHHHHHHhcC
Q 039167 206 IISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.+.|.|.+|+||||++.++...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 8999999999999999888773
No 336
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.87 E-value=0.69 Score=50.31 Aligned_cols=24 Identities=50% Similarity=0.499 Sum_probs=21.7
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
...+|.++|.+|+||||++..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999988876
No 337
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.87 E-value=0.043 Score=53.57 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=22.0
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
...+|.|+|+.|+||||+++.+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999763
No 338
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.85 E-value=0.098 Score=50.07 Aligned_cols=112 Identities=13% Similarity=0.113 Sum_probs=54.3
Q ss_pred cCCceEEEeCCC-CCCCc---cchHHhhcCCcccEEeccccCCcccccccccccccccCCCCCcEEeccCCCCcc-----
Q 039167 530 LRGLRSLLLEST-KHSSV---ILPQLFDKLTCLRALKLEVHNERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIE----- 600 (923)
Q Consensus 530 ~~~Lr~L~l~~~-~~~~~---~l~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~----- 600 (923)
-+.|+.|+++++ .+... .+...+..-..|+.|+|++|.. .......+-+.+..=..|++|+|++|. +.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~i--gd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~Ga~ 116 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAI--SDSEARGLIELIETSPSLRVLNVESNF-LTPELLA 116 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCC--BHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCC--ChHHHHHHHHHHhcCCccCeEecCCCc-CCHHHHH
Confidence 455667777664 43321 1233455556677777766551 111222333334444567777777666 43
Q ss_pred ccchhhhCCCCCcEEecCCCcc--cc-----ccCccccCCCCCCEEeCCCC
Q 039167 601 RLPETLCELYNLEHLNVNCCVK--LR-----ELPQGIGRLRKLMYLDNECT 644 (923)
Q Consensus 601 ~lp~~i~~L~~L~~L~L~~~~~--l~-----~lp~~i~~L~~L~~L~l~~~ 644 (923)
.+-+.+..=..|++|+|++|.. +. .+-..+..-+.|+.|+++.+
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 2223333444566666665421 11 12222334455666666544
No 339
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.84 E-value=0.28 Score=50.72 Aligned_cols=87 Identities=20% Similarity=0.121 Sum_probs=45.2
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHH--HHHHHHHHHhCCC---CCCcCHHHHHH-HH
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFR--IARAIIEALTGCL---PNFVEFQSLMQ-HI 276 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~--~~~~i~~~l~~~~---~~~~~~~~~~~-~l 276 (923)
...+++|+|.+|+||||++..++.. .... ...+.+...+...... .+....+..+... ....+..++.. .+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~--~~~~-~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l 173 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY--YKGK-GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH--HHHT-TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHc-CCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHH
Confidence 3478999999999999999988763 2221 2333333333222221 1223334333221 11233444433 34
Q ss_pred HHHhcCCceEEEecCC
Q 039167 277 QKHVAGKKLLLVLDDV 292 (923)
Q Consensus 277 ~~~l~~kr~LlVlDdv 292 (923)
......+.=++|+|--
T Consensus 174 ~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 174 EKARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHHTCCEEEEECC
T ss_pred HHHHhCCCCEEEEeCC
Confidence 4333345567888965
No 340
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.84 E-value=0.045 Score=52.16 Aligned_cols=24 Identities=38% Similarity=0.332 Sum_probs=21.2
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
..++|.|+|+.|+||||+|+.+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 345789999999999999999986
No 341
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.82 E-value=0.053 Score=52.98 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=21.4
Q ss_pred CEEEEEEecCCChHHHHHHHHhcC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
..+++|+|+.|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999773
No 342
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.80 E-value=0.26 Score=54.20 Aligned_cols=42 Identities=31% Similarity=0.508 Sum_probs=29.6
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCccc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFD 247 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 247 (923)
...+++|+|..|+|||||++.+... .. .....+++...+.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgl--l~-~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQ--FE-QQGKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHH--HH-HTTCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHH--hh-hcCCeEEEecCcccc
Confidence 4679999999999999999998763 22 123455555444444
No 343
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.79 E-value=0.084 Score=53.08 Aligned_cols=24 Identities=21% Similarity=0.111 Sum_probs=22.0
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
....|+|.|+.|+||||+|+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999976
No 344
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.79 E-value=0.057 Score=52.20 Aligned_cols=24 Identities=33% Similarity=0.337 Sum_probs=21.5
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
...+|+|.|+.|+||||+|+.+.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999976
No 345
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.77 E-value=0.058 Score=54.68 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=22.1
Q ss_pred CCCEEEEEEecCCChHHHHHHHHhc
Q 039167 202 KGPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
....+|+|.|+.|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999876
No 346
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.75 E-value=0.058 Score=52.08 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.9
Q ss_pred CEEEEEEecCCChHHHHHHHHhc
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
..+|+|.|+.|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 347
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.72 E-value=0.21 Score=53.67 Aligned_cols=110 Identities=13% Similarity=0.142 Sum_probs=57.2
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEE-EEEeCCcccHHHHHHHHHHHHhCCCC--CCcCHHHHHHHHHHH
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRI-WVCVSDPFDEFRIARAIIEALTGCLP--NFVEFQSLMQHIQKH 279 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~~s~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~ 279 (923)
.-.+++|+|+.|+||||+++.+... +.......+ ++. ++... ... ...+.... -..+.......+...
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~--~~~~~~g~I~~~e--~~~e~--~~~---~~~~~v~Q~~~g~~~~~~~~~l~~~ 205 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIE--DPIEY--VFK---HKKSIVNQREVGEDTKSFADALRAA 205 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHH--HHHHSCCEEEEEE--SSCCS--CCC---CSSSEEEEEEBTTTBSCSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh--cCcCCCcEEEEec--ccHhh--hhc---cCceEEEeeecCCCHHHHHHHHHHH
Confidence 4468999999999999999988763 221112333 222 11110 000 00000000 000111224567777
Q ss_pred hcCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecchHHH
Q 039167 280 VAGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRKEAVA 326 (923)
Q Consensus 280 l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 326 (923)
+...+-+|++|.+- +.+....+ +.....|..|+.|+...++.
T Consensus 206 L~~~pd~illdE~~--d~e~~~~~---l~~~~~g~~vi~t~H~~~~~ 247 (372)
T 2ewv_A 206 LREDPDVIFVGEMR--DLETVETA---LRAAETGHLVFGTLHTNTAI 247 (372)
T ss_dssp TTSCCSEEEESCCC--SHHHHHHH---HHHHTTTCEEEECCCCCSHH
T ss_pred hhhCcCEEEECCCC--CHHHHHHH---HHHHhcCCEEEEEECcchHH
Confidence 77788899999994 22333322 22223466788888865543
No 348
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.67 E-value=0.053 Score=52.81 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 039167 206 IISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999987
No 349
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.64 E-value=0.057 Score=50.44 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=21.4
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
..++++|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999887
No 350
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.63 E-value=0.83 Score=52.43 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=21.4
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.-.+++|+|+.|.|||||++.+..-
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999653
No 351
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.62 E-value=0.074 Score=50.95 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=22.3
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
...+|.|+|++|+||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999873
No 352
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.60 E-value=0.046 Score=53.03 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=20.2
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039167 205 HIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999876
No 353
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.59 E-value=0.055 Score=53.80 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039167 205 HIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999976
No 354
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.57 E-value=0.066 Score=55.97 Aligned_cols=25 Identities=32% Similarity=0.577 Sum_probs=20.9
Q ss_pred CCCEEEEEEecCCChHHHHHHHHhc
Q 039167 202 KGPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
++.+||+|.|-|||||||.|..+.-
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHH
Confidence 3679999999999999999866544
No 355
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.52 E-value=0.071 Score=49.40 Aligned_cols=24 Identities=33% Similarity=0.324 Sum_probs=21.5
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.-.+++|+|+.|.|||||++.+..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 446999999999999999999976
No 356
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.52 E-value=0.07 Score=55.75 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=22.1
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
...+|+|+|+.|+|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 567999999999999999999876
No 357
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.52 E-value=0.07 Score=52.29 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=23.0
Q ss_pred CCCEEEEEEecCCChHHHHHHHHhc
Q 039167 202 KGPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
...++|.|.|++|+||||.|+.+.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999987
No 358
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.51 E-value=0.055 Score=51.28 Aligned_cols=21 Identities=38% Similarity=0.502 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 039167 206 IISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.|.|+|++|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 359
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.47 E-value=0.084 Score=50.79 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.6
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
...+|+|.|+.|+||||+|+.+..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999976
No 360
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.45 E-value=0.065 Score=51.30 Aligned_cols=22 Identities=27% Similarity=0.307 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039167 205 HIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
..|+|.|+.|+||||+|+.+.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 361
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.42 E-value=0.068 Score=54.41 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=21.2
Q ss_pred CEEEEEEecCCChHHHHHHHHhc
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 362
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.40 E-value=0.077 Score=53.48 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.6
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
...+|+|.|+.|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998876
No 363
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.38 E-value=0.045 Score=52.33 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 039167 206 IISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~ 226 (923)
+|.|+|++|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999977
No 364
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.36 E-value=0.065 Score=51.50 Aligned_cols=24 Identities=21% Similarity=0.578 Sum_probs=21.6
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
..++|+|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 457899999999999999999876
No 365
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.36 E-value=0.065 Score=54.07 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=21.1
Q ss_pred CEEEEEEecCCChHHHHHHHHhc
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
..+|+|+|+.|+|||||++.+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 366
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.35 E-value=0.065 Score=51.94 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=21.0
Q ss_pred CEEEEEEecCCChHHHHHHHHhc
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
..+|+|.|+.|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 367
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.34 E-value=0.072 Score=51.77 Aligned_cols=24 Identities=29% Similarity=0.217 Sum_probs=21.4
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
...+|.|+|+.|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999999976
No 368
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.27 E-value=0.49 Score=49.60 Aligned_cols=25 Identities=40% Similarity=0.465 Sum_probs=22.4
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
...+++|+|+.|+||||+++.+...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999988763
No 369
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.24 E-value=0.12 Score=51.08 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=22.3
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
....|.|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5688999999999999999888764
No 370
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.20 E-value=0.075 Score=51.11 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=22.0
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
...+|+|+|+.|+||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999977
No 371
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.18 E-value=0.071 Score=52.12 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.3
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.-.+++|+|+.|+|||||++.+..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345899999999999999999976
No 372
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.17 E-value=0.053 Score=51.18 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=20.1
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039167 205 HIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999987
No 373
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.13 E-value=0.08 Score=51.89 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.4
Q ss_pred CEEEEEEecCCChHHHHHHHHhcC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
..+|.|.|+.|+||||+|+.+...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999873
No 374
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.09 E-value=0.071 Score=50.02 Aligned_cols=21 Identities=29% Similarity=0.369 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 039167 206 IISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 375
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.06 E-value=0.12 Score=51.09 Aligned_cols=39 Identities=23% Similarity=0.257 Sum_probs=29.0
Q ss_pred hhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcC
Q 039167 183 KDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 183 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
++..+++.+.+.. ....+|+|+|.+|+|||||+..+...
T Consensus 15 ~~~~~~~~~~~~~------~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 15 KRLAEKNREALRE------SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHH------HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcc------cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4445555555532 26789999999999999999888763
No 376
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.04 E-value=0.26 Score=51.76 Aligned_cols=54 Identities=13% Similarity=0.051 Sum_probs=36.6
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHh
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALT 260 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 260 (923)
.-.++.|.|.+|+||||+|..+...... .=..++|++. ..+...+...++....
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDLT 98 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHhh
Confidence 3458999999999999999888764222 2234556554 4566677777765543
No 377
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=91.98 E-value=0.86 Score=60.99 Aligned_cols=222 Identities=15% Similarity=0.085 Sum_probs=0.0
Q ss_pred EEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCC--------CCCCcCHHHHHHHHHH
Q 039167 207 ISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGC--------LPNFVEFQSLMQHIQK 278 (923)
Q Consensus 207 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~--------~~~~~~~~~~~~~l~~ 278 (923)
|-++|++|.|||++|+.+.. .... ...+.++.+...+...+++.+-..+... .+..
T Consensus 1270 vLL~GPpGtGKT~la~~~l~--~~~~--~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~------------ 1333 (2695)
T 4akg_A 1270 IILCGPPGSGKTMIMNNALR--NSSL--YDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKS------------ 1333 (2695)
T ss_dssp EEEECSTTSSHHHHHHHHHH--SCSS--CEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBS------------
T ss_pred EEEECCCCCCHHHHHHHHHh--cCCC--CceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCC------------
Q ss_pred HhcCCceEEEecCCCCCChh------hHHHhHHhhhcCC------------CCcEEEEEecchH-------HHHHhcccc
Q 039167 279 HVAGKKLLLVLDDVWNENFH------KWEQFNNCLKNCL------------YGSKILITTRKEA-------VARIMGSTN 333 (923)
Q Consensus 279 ~l~~kr~LlVlDdv~~~~~~------~~~~l~~~l~~~~------------~gs~iivTtR~~~-------v~~~~~~~~ 333 (923)
.+|+.++.+||+.-...+ ..+.++..+..++ .+..+|.++.... -.+......
T Consensus 1334 --~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~ 1411 (2695)
T 4akg_A 1334 --DIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAA 1411 (2695)
T ss_dssp --SSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEE
T ss_pred --CCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheee
Q ss_pred eEeCCCCChHHHHHHHHHhhcCCCCccchhhHHHHHHHHHHhcCCChHHHHHHHHHHccCCCHHHHHHHHhhhhhhhhhh
Q 039167 334 IISVNVLSGMECWLVFESLAFVGKSMEERENLEKIGREITRKCKGLPLATKTIASLLRSKNTEKEWQNILKSEIWEIEQV 413 (923)
Q Consensus 334 ~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~ 413 (923)
++.+...+.++-..+|.....+.- ...++...++..|+.. +.+-|..+...
T Consensus 1412 vi~i~~P~~~~l~~I~~~il~~~l--~~~~~v~~~~~~lv~a-------------------ti~~y~~v~~~-------- 1462 (2695)
T 4akg_A 1412 ILYLGYPSGKSLSQIYEIYYKAIF--KLVPEFRSYTEPFARA-------------------SVHLYNECKAR-------- 1462 (2695)
T ss_dssp EEECCCCTTTHHHHHHHHHHHHHT--TSSGGGGGGHHHHHHH-------------------HHHHHHHHHHH--------
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHH-------------------HHHHHHHHHHH--------
Q ss_pred hhhhhhHHHhhcccCChhhHHHHhhhccC-CCCcccChHHHHHHHHhc-----cCCCHHHHHHHHHHHHHh
Q 039167 414 EKNLLAPLLLSYNELPSKVKQCFTYCAVF-PKDVILKKDKLIELWMAQ-----ETKEMEEIGEEYFNVLAS 478 (923)
Q Consensus 414 ~~~~~~~l~~sy~~L~~~~k~~fl~~s~f-p~~~~i~~~~Li~~W~ae-----~~~~~e~~~~~~~~~Lv~ 478 (923)
....-+.-|--=+.++-+.|.-+-.. ++...-+.+.++++|+.| .+.-..+.-...|.+++.
T Consensus 1463 ---~~~~~k~HY~FnlRDLsrv~qGll~~~~~~~~~~~~~l~rLw~HE~~Rvf~DRLv~~~D~~~f~~~l~ 1530 (2695)
T 4akg_A 1463 ---YSTGLQSHYLFSPRELTRLVRGVYTAINTGPRQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLY 1530 (2695)
T ss_dssp ---SCTTTCTTCCCCHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTTTCCSSHHHHHHHHHHH
T ss_pred ---cCCccCCCcccCHHHHHHHHHHHHhcCchhhhccHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
No 378
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.94 E-value=0.12 Score=51.02 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039167 205 HIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.+++|+|+.|+|||||.+.+..
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999976
No 379
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.93 E-value=0.12 Score=51.60 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.9
Q ss_pred CEEEEEEecCCChHHHHHHHHhc
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
-.+++|+|+.|+|||||.+.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999999976
No 380
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.90 E-value=0.1 Score=53.79 Aligned_cols=24 Identities=38% Similarity=0.607 Sum_probs=21.8
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999873
No 381
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.87 E-value=0.12 Score=51.63 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHhcC
Q 039167 205 HIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.+++|+|+.|+|||||.+.+..-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 78999999999999999999753
No 382
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.86 E-value=0.22 Score=49.39 Aligned_cols=45 Identities=27% Similarity=0.282 Sum_probs=30.3
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCccc---cc-ccceEEEEEeCCccc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDV---EK-NFEKRIWVCVSDPFD 247 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~-~F~~~~wv~~s~~~~ 247 (923)
.-.+++|+|+.|+|||||++.+...... .. .-...+|+.....+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~ 72 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 72 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC
Confidence 4479999999999999999999752111 11 123577776554433
No 383
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.84 E-value=0.094 Score=49.84 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.5
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.-.+|+|+|+.|+||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999977
No 384
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.84 E-value=0.078 Score=51.10 Aligned_cols=21 Identities=43% Similarity=0.687 Sum_probs=19.8
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 039167 206 IISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~ 226 (923)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 385
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.84 E-value=0.08 Score=53.58 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=21.1
Q ss_pred CEEEEEEecCCChHHHHHHHHhc
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
..+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999985
No 386
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.80 E-value=0.054 Score=51.71 Aligned_cols=23 Identities=35% Similarity=0.333 Sum_probs=17.0
Q ss_pred CEEEEEEecCCChHHHHHHHHhc
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
..+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999976
No 387
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.79 E-value=0.089 Score=54.72 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.6
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
...+++|+|++|+||||+++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456999999999999999999876
No 388
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.79 E-value=0.089 Score=51.68 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=21.2
Q ss_pred CEEEEEEecCCChHHHHHHHHhc
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
..+|+|.|+.|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 389
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.73 E-value=0.073 Score=52.52 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.8
Q ss_pred CEEEEEEecCCChHHHHHHHHhc
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
-.+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999876
No 390
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.72 E-value=0.19 Score=52.51 Aligned_cols=24 Identities=38% Similarity=0.457 Sum_probs=22.0
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
...+|+|+|+.|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 557999999999999999999876
No 391
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.71 E-value=0.54 Score=48.59 Aligned_cols=89 Identities=19% Similarity=0.092 Sum_probs=46.3
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCc-ccHHHHHHHHHHHHhCC---CCCCcCHHHHHHHHHHH
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDP-FDEFRIARAIIEALTGC---LPNFVEFQSLMQHIQKH 279 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~---~~~~~~~~~~~~~l~~~ 279 (923)
..+++++|.+|+||||++..+... ....=..+.++..... ......++...+..+.. .+...+...+.....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF--YKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH--HHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 679999999999999999888763 2222123444443221 12222233334444322 11223444443333344
Q ss_pred hc-CCceEEEecCCCC
Q 039167 280 VA-GKKLLLVLDDVWN 294 (923)
Q Consensus 280 l~-~kr~LlVlDdv~~ 294 (923)
++ ..-=++++|-.-.
T Consensus 176 ~~~~~~D~ViIDTpg~ 191 (297)
T 1j8m_F 176 FLSEKMEIIIVDTAGR 191 (297)
T ss_dssp HHHTTCSEEEEECCCS
T ss_pred HHhCCCCEEEEeCCCC
Confidence 43 3334788886543
No 392
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.70 E-value=1 Score=50.16 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=20.8
Q ss_pred CCCEEEEEEecCCChHHHHHHHHhc
Q 039167 202 KGPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
...++|.|+|.+|+||||++..+..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999988875
No 393
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.70 E-value=0.13 Score=52.62 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039167 205 HIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.+++|+|+.|+|||||.+.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999965
No 394
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.68 E-value=0.084 Score=52.18 Aligned_cols=23 Identities=30% Similarity=0.284 Sum_probs=20.9
Q ss_pred CEEEEEEecCCChHHHHHHHHhc
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
...|.|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999977
No 395
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.66 E-value=0.12 Score=49.57 Aligned_cols=38 Identities=13% Similarity=0.030 Sum_probs=27.4
Q ss_pred hHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcC
Q 039167 185 EKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 185 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
-+..+..++..- +....+.|+|++|+||||+|..+++.
T Consensus 44 f~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 44 FLGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 355566666432 13346999999999999999888873
No 396
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.65 E-value=0.09 Score=51.50 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=22.0
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
...+|+|.|+.|+||||+|+.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999873
No 397
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.64 E-value=0.091 Score=51.74 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=21.9
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.-.+++|+|+.|+|||||.+.+...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4468999999999999999998763
No 398
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.63 E-value=0.21 Score=48.08 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 039167 206 IISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 399
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.61 E-value=0.4 Score=52.44 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=22.9
Q ss_pred CCCEEEEEEecCCChHHHHHHHHhcC
Q 039167 202 KGPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
....+|.|+|++|+||||+|+.+...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 35679999999999999999999873
No 400
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.52 E-value=0.089 Score=52.27 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=21.0
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
....|.|.|+.|+||||+|+.+..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
No 401
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.49 E-value=0.14 Score=52.07 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=21.6
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.-.+++|+|+.|+|||||.+.+..-
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999763
No 402
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.28 E-value=0.12 Score=51.02 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=20.9
Q ss_pred CEEEEEEecCCChHHHHHHHHhc
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999865
No 403
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.26 E-value=0.087 Score=50.48 Aligned_cols=22 Identities=41% Similarity=0.448 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHhcC
Q 039167 206 IISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
+++|+|+.|+|||||++.+...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999988763
No 404
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.21 E-value=0.06 Score=52.89 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHhcC
Q 039167 206 IISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
+|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999998763
No 405
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.14 E-value=0.1 Score=51.37 Aligned_cols=21 Identities=38% Similarity=0.476 Sum_probs=19.1
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 039167 206 IISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 406
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.13 E-value=0.14 Score=50.15 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.7
Q ss_pred EEEEEEecCCChHHHHHHHHhcC
Q 039167 205 HIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.+++|+|+.|+|||||.+.+..-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999763
No 407
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.12 E-value=0.16 Score=51.72 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=20.9
Q ss_pred CEEEEEEecCCChHHHHHHHHhc
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
-.+++|+|+.|+|||||++.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999999976
No 408
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.12 E-value=1.1 Score=52.84 Aligned_cols=51 Identities=27% Similarity=0.260 Sum_probs=35.5
Q ss_pred CceecchhhHHHHHHHHhcCCC-------CCCCCCEEEEEEecCCChHHHHHHHHhcC
Q 039167 177 SEIFGRKDEKNELVDRLICENS-------IEQKGPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.++.|.++..++|.+.+.-.-. ..-...+-|.++|++|.|||.+|+++++.
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 4577888888777665532210 01123455789999999999999999984
No 409
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.12 E-value=0.096 Score=51.82 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=21.2
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
....|.|.|+.|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999987
No 410
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.11 E-value=0.16 Score=51.52 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=21.6
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.-.+++|+|+.|+|||||.+.+..-
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 3458999999999999999999753
No 411
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=91.11 E-value=0.28 Score=56.01 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHhcC
Q 039167 205 HIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
+++.|.|.+|.||||++..+...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~ 227 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADL 227 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 58899999999999999888763
No 412
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.08 E-value=0.078 Score=49.82 Aligned_cols=23 Identities=39% Similarity=0.410 Sum_probs=20.7
Q ss_pred EEEEEEecCCChHHHHHHHHhcC
Q 039167 205 HIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
++++|+|..|+|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998763
No 413
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.07 E-value=0.12 Score=50.55 Aligned_cols=25 Identities=32% Similarity=0.280 Sum_probs=22.0
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
...+|.|.|+.|+||||+|+.+...
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999773
No 414
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.06 E-value=0.11 Score=50.46 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.4
Q ss_pred CEEEEEEecCCChHHHHHHHHhcC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
...|+|.|+.|+||||+++.+.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999873
No 415
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.05 E-value=0.16 Score=50.75 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHhcC
Q 039167 205 HIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.+++|+|+.|+|||||.+.+..-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999763
No 416
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.00 E-value=0.22 Score=52.83 Aligned_cols=25 Identities=36% Similarity=0.449 Sum_probs=22.3
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
...+++|+|+.|+||||+++.+...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4679999999999999999988763
No 417
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.99 E-value=0.13 Score=53.49 Aligned_cols=25 Identities=36% Similarity=0.449 Sum_probs=22.1
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
...+++|+|+.|+||||+++.+...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4579999999999999999988763
No 418
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.98 E-value=0.17 Score=51.15 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=21.3
Q ss_pred CEEEEEEecCCChHHHHHHHHhcC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
-.+++|+|+.|+|||||.+.+..-
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999763
No 419
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.96 E-value=0.11 Score=51.18 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=19.1
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 039167 206 IISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 420
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.95 E-value=0.11 Score=52.40 Aligned_cols=24 Identities=33% Similarity=0.303 Sum_probs=21.0
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.-.+++|+|+.|+|||||++.+..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 346899999999999999998874
No 421
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.95 E-value=0.22 Score=53.21 Aligned_cols=37 Identities=24% Similarity=0.404 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhc
Q 039167 186 KNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 186 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
..++.+.+... .....+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~----~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPD----SGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGG----CCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhh----cCCceEEEEECCCCCCHHHHHHHHHH
Confidence 44555555432 23678999999999999999988865
No 422
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.94 E-value=0.17 Score=51.27 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.3
Q ss_pred CEEEEEEecCCChHHHHHHHHhcC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
-.+++|+|+.|+|||||.+.+..-
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999763
No 423
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=90.89 E-value=0.36 Score=52.27 Aligned_cols=86 Identities=13% Similarity=0.147 Sum_probs=50.7
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccc----eEEEEEeCCcc-cHHHHHHHHHHHHhCC-------CCCCcCHH--
Q 039167 205 HIISLVGMGGIGKTTLAQFAYNNGDVEKNFE----KRIWVCVSDPF-DEFRIARAIIEALTGC-------LPNFVEFQ-- 270 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~-- 270 (923)
+-++|.|..|+|||+|+.++.+.... +-+ .++++-+++.. ...++.+.+.+.=... ..+..-..
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHH
Confidence 34789999999999999999885332 223 56666676554 3455555554431010 01111111
Q ss_pred ---HHHHHHHHHhc---CCceEEEecCC
Q 039167 271 ---SLMQHIQKHVA---GKKLLLVLDDV 292 (923)
Q Consensus 271 ---~~~~~l~~~l~---~kr~LlVlDdv 292 (923)
...-.+.++++ ++.+|+++||+
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 11223455553 78999999999
No 424
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.87 E-value=0.32 Score=46.88 Aligned_cols=35 Identities=31% Similarity=0.346 Sum_probs=24.6
Q ss_pred EEEEEecCCChHHHHHHHHhcCcccccccceEEEEEe
Q 039167 206 IISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCV 242 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 242 (923)
.|+|-|.-|+||||.++.+.+. .+..-..+++..-
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~--L~~~g~~v~~tre 36 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY--LEKRGKKVILKRE 36 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEEC
Confidence 4788999999999999999873 3333333444443
No 425
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.76 E-value=0.18 Score=51.50 Aligned_cols=53 Identities=17% Similarity=0.221 Sum_probs=33.5
Q ss_pred HHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcCC--CCcEEEEEecchHHHH
Q 039167 275 HIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNCL--YGSKILITTRKEAVAR 327 (923)
Q Consensus 275 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~--~gs~iivTtR~~~v~~ 327 (923)
.|.+.|-.++-+|+||..-.. +...-..+...+.... .|.-||++|.+...+.
T Consensus 166 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~ 221 (271)
T 2ixe_A 166 ALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAE 221 (271)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHT
T ss_pred HHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHH
Confidence 356667778889999976332 2334444555554432 3677888888876654
No 426
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.74 E-value=0.078 Score=52.88 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=16.4
Q ss_pred CEEEEEEecCCChHHHHHHHHh-c
Q 039167 204 PHIISLVGMGGIGKTTLAQFAY-N 226 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~-~ 226 (923)
-.+++|+|+.|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 3589999999999999999998 5
No 427
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.74 E-value=0.091 Score=52.85 Aligned_cols=22 Identities=41% Similarity=0.546 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039167 205 HIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.+|+|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 428
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.68 E-value=0.64 Score=53.33 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=20.7
Q ss_pred CEEEEEEecCCChHHHHHHHHhc
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
-.+++|+|+.|.|||||++.+..
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999998865
No 429
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.68 E-value=0.12 Score=54.01 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=20.7
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039167 205 HIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.+|+|.|+.|+||||||+.+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999987
No 430
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=90.66 E-value=0.34 Score=43.03 Aligned_cols=34 Identities=21% Similarity=0.181 Sum_probs=17.6
Q ss_pred CCcEEeccCCCCccccch-hhhCCCCCcEEecCCCc
Q 039167 587 HLKYLNLANQMEIERLPE-TLCELYNLEHLNVNCCV 621 (923)
Q Consensus 587 ~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~ 621 (923)
+|++|+|++|. +..+|. .+..+++|++|+|++|.
T Consensus 32 ~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 45555555555 555543 23445555555555543
No 431
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=90.62 E-value=0.6 Score=56.16 Aligned_cols=22 Identities=18% Similarity=0.098 Sum_probs=20.0
Q ss_pred CCEEEEEEecCCChHHHHHHHH
Q 039167 203 GPHIISLVGMGGIGKTTLAQFA 224 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v 224 (923)
.-.+++|+|+.|.||||+.+.+
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3468999999999999999988
No 432
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.61 E-value=0.12 Score=50.34 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 039167 206 IISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~ 226 (923)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999976
No 433
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.58 E-value=0.2 Score=48.04 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=21.8
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
....|+|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4557899999999999999998774
No 434
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=90.55 E-value=0.32 Score=43.23 Aligned_cols=53 Identities=17% Similarity=0.221 Sum_probs=41.4
Q ss_pred cEEeccCCCCcc--ccchhhhCCCCCcEEecCCCccccccCcc-ccCCCCCCEEeCCCCc
Q 039167 589 KYLNLANQMEIE--RLPETLCELYNLEHLNVNCCVKLRELPQG-IGRLRKLMYLDNECTV 645 (923)
Q Consensus 589 ~~L~L~~~~~l~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 645 (923)
..++-+++. ++ .+|..+. .+|++|+|++|. +..+|.+ +..+++|++|+|.+|.
T Consensus 11 ~~v~Cs~~~-L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRG-LTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSC-CCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCC-CccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 367777776 76 7886432 479999999997 8888876 5779999999999873
No 435
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.53 E-value=0.19 Score=51.13 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.2
Q ss_pred CEEEEEEecCCChHHHHHHHHhcC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
-.+++|+|+.|+|||||.+.+..-
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 358999999999999999999763
No 436
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=90.53 E-value=1.8 Score=49.59 Aligned_cols=125 Identities=12% Similarity=0.118 Sum_probs=66.1
Q ss_pred EEEEEEecCCChHHHHHHHHhcCccc-ccc--cc-eEEEEEeC----CcccHHHHH--------------HHHHHHHhCC
Q 039167 205 HIISLVGMGGIGKTTLAQFAYNNGDV-EKN--FE-KRIWVCVS----DPFDEFRIA--------------RAIIEALTGC 262 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~--F~-~~~wv~~s----~~~~~~~~~--------------~~i~~~l~~~ 262 (923)
.+++|+|+.|+|||||.+.+...... .+. +. .+.++.-. ...++.+.+ ..+++.++..
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~ 462 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGII 462 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCT
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCc
Confidence 58999999999999999999874221 111 11 22333211 111222222 2233333332
Q ss_pred CC-----CCcCH-HHHHHHHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcC--CCCcEEEEEecchHHHHHh
Q 039167 263 LP-----NFVEF-QSLMQHIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNC--LYGSKILITTRKEAVARIM 329 (923)
Q Consensus 263 ~~-----~~~~~-~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtR~~~v~~~~ 329 (923)
.. ..-+. +...-.|.+.|..++-+++||.--.. |...-..+...+... ..|.-||++|.+...+..+
T Consensus 463 ~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~ 538 (607)
T 3bk7_A 463 DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV 538 (607)
T ss_dssp TTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 11 11122 23333567778888899999976321 223333344444322 2355688888887665543
No 437
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=90.46 E-value=0.8 Score=50.09 Aligned_cols=53 Identities=13% Similarity=0.006 Sum_probs=33.7
Q ss_pred HHHHhcCCc--eEEEecCCCCC-ChhhHHHhHHhhhcCCCCcEEEEEecchHHHHH
Q 039167 276 IQKHVAGKK--LLLVLDDVWNE-NFHKWEQFNNCLKNCLYGSKILITTRKEAVARI 328 (923)
Q Consensus 276 l~~~l~~kr--~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 328 (923)
|...+-.+. -+|+||++-.. +......+...+.....|.-||++|.+..++..
T Consensus 306 lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~ 361 (415)
T 4aby_A 306 LAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAAR 361 (415)
T ss_dssp HHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTT
T ss_pred HHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhh
Confidence 334454455 79999998443 334445555555543347789999998887754
No 438
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.45 E-value=1.4 Score=48.49 Aligned_cols=52 Identities=12% Similarity=0.060 Sum_probs=33.9
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHH
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEA 258 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 258 (923)
.-.++.|.|.+|+||||+|.+++.+...+ =..++|++.. .+..++...++..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlE--ms~~ql~~R~~~~ 247 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLE--MGKKENIKRLIVT 247 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSS--SCTTHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECC--CCHHHHHHHHHHH
Confidence 34689999999999999998887642222 1245665544 3445555555544
No 439
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=90.41 E-value=0.2 Score=54.55 Aligned_cols=50 Identities=26% Similarity=0.412 Sum_probs=34.4
Q ss_pred CceecchhhHHHHHHHHhcC-------CCC-CCCCCEEEEEEecCCChHHHHHHHHhc
Q 039167 177 SEIFGRKDEKNELVDRLICE-------NSI-EQKGPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~-------~~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
..++|.++.++.+...+... ... .....+-|.++|++|+||||+|+.+..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 35788888777776655221 000 011345688999999999999999987
No 440
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.40 E-value=1.3 Score=50.57 Aligned_cols=125 Identities=11% Similarity=0.052 Sum_probs=65.4
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccc-cc-c-c-eEEEEEeC--C--cccH--------------HHHHHHHHHHHhCC
Q 039167 205 HIISLVGMGGIGKTTLAQFAYNNGDVE-KN-F-E-KRIWVCVS--D--PFDE--------------FRIARAIIEALTGC 262 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~-F-~-~~~wv~~s--~--~~~~--------------~~~~~~i~~~l~~~ 262 (923)
.+++|+|+.|+|||||++.+..-.... +. . . .+.++.-. . ..+. ......+++.++..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~ 458 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence 579999999999999999997642211 10 0 0 11222100 0 0011 12233344444432
Q ss_pred C-----CCCcCHHH-HHHHHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcC--CCCcEEEEEecchHHHHHh
Q 039167 263 L-----PNFVEFQS-LMQHIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNC--LYGSKILITTRKEAVARIM 329 (923)
Q Consensus 263 ~-----~~~~~~~~-~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtR~~~v~~~~ 329 (923)
. +..-+..+ ..-.|.+.|..++=+|+||.--.. |...-..+...+... ..|.-||++|.+.+.+..+
T Consensus 459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~ 534 (608)
T 3j16_B 459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYL 534 (608)
T ss_dssp TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHH
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 1 12222333 334567788889999999976221 222223333333321 1255688888887666543
No 441
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.38 E-value=0.13 Score=48.35 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=22.0
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3578999999999999999998863
No 442
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.37 E-value=0.1 Score=50.90 Aligned_cols=23 Identities=35% Similarity=0.296 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHhcC
Q 039167 205 HIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.+++|+|+.|+|||||++.+..-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999998753
No 443
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.31 E-value=0.14 Score=50.77 Aligned_cols=23 Identities=17% Similarity=0.353 Sum_probs=21.0
Q ss_pred CEEEEEEecCCChHHHHHHHHhc
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
..+|+|.|+.|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999976
No 444
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.21 E-value=0.12 Score=50.83 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=20.1
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039167 205 HIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
..|.|.|+.|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999977
No 445
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.21 E-value=0.21 Score=51.13 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=21.4
Q ss_pred CEEEEEEecCCChHHHHHHHHhcC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
-.+++|+|+.|+|||||.+.+..-
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 358999999999999999999873
No 446
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=90.18 E-value=0.26 Score=53.32 Aligned_cols=88 Identities=10% Similarity=0.141 Sum_probs=50.2
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccc--------cccc-eEEEEEeCCcc-cHHHHHHHHHHH--HhC-----CCCCCc
Q 039167 205 HIISLVGMGGIGKTTLAQFAYNNGDVE--------KNFE-KRIWVCVSDPF-DEFRIARAIIEA--LTG-----CLPNFV 267 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~~s~~~-~~~~~~~~i~~~--l~~-----~~~~~~ 267 (923)
+-++|.|.+|+|||+|+.++.+..... ++=+ .++++-+++.. ...++.+.+.+. +.. ...+..
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p 227 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDP 227 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCC
Confidence 457899999999999999998854331 1111 55666676554 344555554332 100 001111
Q ss_pred CHHH-----HHHHHHHHhc---CCceEEEecCC
Q 039167 268 EFQS-----LMQHIQKHVA---GKKLLLVLDDV 292 (923)
Q Consensus 268 ~~~~-----~~~~l~~~l~---~kr~LlVlDdv 292 (923)
.... ..-.+.++++ ++.+|+++||+
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 1111 1223455553 78999999999
No 447
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.15 E-value=0.18 Score=52.61 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=22.3
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
..++|.|+|+.|+||||||..++..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4469999999999999999999873
No 448
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.13 E-value=0.19 Score=51.01 Aligned_cols=25 Identities=36% Similarity=0.394 Sum_probs=22.2
Q ss_pred CCCEEEEEEecCCChHHHHHHHHhc
Q 039167 202 KGPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
....++.+.|.||+||||++..+..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHH
Confidence 4678999999999999999998875
No 449
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.06 E-value=0.15 Score=50.01 Aligned_cols=21 Identities=43% Similarity=0.436 Sum_probs=19.3
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 039167 206 IISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999977
No 450
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=89.99 E-value=2 Score=49.09 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=21.2
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.-.+++|+|+.|+|||||.+.+..
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHhc
Confidence 345899999999999999999875
No 451
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.96 E-value=0.16 Score=51.29 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=20.7
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039167 205 HIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 452
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=89.89 E-value=0.99 Score=51.78 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.1
Q ss_pred CEEEEEEecCCChHHHHHHHHhcC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
-.+++|+|+.|.|||||++.+..-
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhhc
Confidence 358999999999999999999653
No 453
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=89.83 E-value=0.37 Score=46.58 Aligned_cols=110 Identities=11% Similarity=0.001 Sum_probs=52.8
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCC--CCcCHHHHHHHHHHHh
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLP--NFVEFQSLMQHIQKHV 280 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l 280 (923)
.-++..++|..|.||||.+.....+... .... ++.+....+ ...-...+...++.... ...+.. .+.+.+
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~-~g~k-Vli~k~~~d--~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~ 98 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQF-AKQH-AIVFKPCID--NRYSEEDVVSHNGLKVKAVPVSASK----DIFKHI 98 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHH-TTCC-EEEEECC-------------------CCEEECSSGG----GGGGGC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH-CCCE-EEEEEeccC--CcchHHHHHhhcCCeeEEeecCCHH----HHHHHH
Confidence 3478899999999999999766653222 2222 333332211 11111233343332211 011111 222223
Q ss_pred cCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecch
Q 039167 281 AGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRKE 323 (923)
Q Consensus 281 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 323 (923)
.++--+|++|.+.--+.+..+.+....+. |-.||+|-++.
T Consensus 99 ~~~~dvViIDEaQF~~~~~V~~l~~l~~~---~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIVEVVQVLANR---GYRVIVAGLDQ 138 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHHHHHHHHHHT---TCEEEEEECSB
T ss_pred hcCCCEEEEECcccCCHHHHHHHHHHhhC---CCEEEEEeccc
Confidence 33334999999976544455555443332 66899999853
No 454
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.81 E-value=0.16 Score=52.77 Aligned_cols=23 Identities=39% Similarity=0.429 Sum_probs=21.1
Q ss_pred CEEEEEEecCCChHHHHHHHHhc
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.++|.|+|+.|+||||||+.+..
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 455
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.81 E-value=0.17 Score=48.65 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.3
Q ss_pred CEEEEEEecCCChHHHHHHHHhcC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
...|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998764
No 456
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.80 E-value=0.16 Score=51.71 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.5
Q ss_pred CEEEEEEecCCChHHHHHHHHhcC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
-.+++|+|+.|+|||||.+.+..-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 457
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.79 E-value=0.16 Score=50.34 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.4
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 039167 206 IISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999976
No 458
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.79 E-value=0.18 Score=51.87 Aligned_cols=23 Identities=22% Similarity=0.431 Sum_probs=21.1
Q ss_pred CEEEEEEecCCChHHHHHHHHhc
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.++|.|+|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999999987
No 459
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.74 E-value=0.16 Score=49.31 Aligned_cols=88 Identities=16% Similarity=0.151 Sum_probs=47.6
Q ss_pred EEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHH---hC------CCCCCcCHHHHHHHH
Q 039167 206 IISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEAL---TG------CLPNFVEFQSLMQHI 276 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l---~~------~~~~~~~~~~~~~~l 276 (923)
+|.|.|++|+||+|.|+.+.+. |. ...++ .-+++++.+..- +. ........+-....+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~------~g-~~~is------tGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv 68 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE------KG-FVHIS------TGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALI 68 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH------HC-CEEEE------HHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH------HC-CeEEc------HHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHH
Confidence 5789999999999999999873 21 12232 223333322110 00 011222334455667
Q ss_pred HHHhcCCceEEEecCCCCCChhhHHHhHHhhh
Q 039167 277 QKHVAGKKLLLVLDDVWNENFHKWEQFNNCLK 308 (923)
Q Consensus 277 ~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 308 (923)
.+.+..... +|||..-.. ..+.+.+...+.
T Consensus 69 ~~~l~~~~~-~ilDGfPRt-~~Qa~~l~~~l~ 98 (206)
T 3sr0_A 69 EEVFPKHGN-VIFDGFPRT-VKQAEALDEMLE 98 (206)
T ss_dssp HHHCCSSSC-EEEESCCCS-HHHHHHHHHHHH
T ss_pred HHhhccCCc-eEecCCchh-HHHHHHHHhhHH
Confidence 777765543 688988433 244444544443
No 460
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.73 E-value=0.33 Score=46.39 Aligned_cols=92 Identities=18% Similarity=0.189 Sum_probs=59.1
Q ss_pred hHHhhcCCcccEEecccc-CCcccccccccccccccCCCCCcEEeccCCCCcc-----ccchhhhCCCCCcEEecCCCcc
Q 039167 549 PQLFDKLTCLRALKLEVH-NERLPEDFIKEVPTNIEKLLHLKYLNLANQMEIE-----RLPETLCELYNLEHLNVNCCVK 622 (923)
Q Consensus 549 ~~~~~~~~~Lr~L~L~~~-~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~l~-----~lp~~i~~L~~L~~L~L~~~~~ 622 (923)
...+.+-+.|+.|+|+++ . +.......+-+.+..-..|+.|+|++|. +. .+-+.+..=+.|++|+|++|.
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~--igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~- 109 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKR--VSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNF- 109 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCS--SCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSB-
T ss_pred HHHHhcCCCccEEECCCCCC--CCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCc-
Confidence 344566788999999864 3 1122233445556666789999999887 54 344455566788888888886
Q ss_pred ccc-----cCccccCCCCCCEEeCCCC
Q 039167 623 LRE-----LPQGIGRLRKLMYLDNECT 644 (923)
Q Consensus 623 l~~-----lp~~i~~L~~L~~L~l~~~ 644 (923)
+.. +-..+..-+.|++|+|+++
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 432 3333445566888887754
No 461
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=89.72 E-value=0.38 Score=52.42 Aligned_cols=100 Identities=10% Similarity=0.081 Sum_probs=56.6
Q ss_pred HHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcCcccccc--cceEEEEEeCCcc-cHHHHHHHHHHHHhCC--
Q 039167 188 ELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNNGDVEKN--FEKRIWVCVSDPF-DEFRIARAIIEALTGC-- 262 (923)
Q Consensus 188 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-- 262 (923)
+.++.|..-. .-+-++|.|.+|+|||+|+.++.++...... =+.++++-+++.. ...++.+.+...=...
T Consensus 141 r~ID~l~pig-----rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rt 215 (469)
T 2c61_A 141 STIDGTNTLV-----RGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERA 215 (469)
T ss_dssp HHHHTTSCCB-----TTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGE
T ss_pred Eeeeeeeccc-----cCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccce
Confidence 4456564321 3345788999999999999999885433211 1356676666554 3455665655431110
Q ss_pred -----CCCCcCHH-----HHHHHHHHHhc---CCceEEEecCC
Q 039167 263 -----LPNFVEFQ-----SLMQHIQKHVA---GKKLLLVLDDV 292 (923)
Q Consensus 263 -----~~~~~~~~-----~~~~~l~~~l~---~kr~LlVlDdv 292 (923)
..+..-.. ...-.+.++++ ++.+|+++||+
T Consensus 216 vvV~~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 216 VVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 01111111 11223445544 79999999997
No 462
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.66 E-value=0.16 Score=50.96 Aligned_cols=23 Identities=39% Similarity=0.483 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHhcC
Q 039167 205 HIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.+++|+|+.|+|||||.+.+..-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999999763
No 463
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.65 E-value=0.19 Score=50.03 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=22.5
Q ss_pred CCCEEEEEEecCCChHHHHHHHHhc
Q 039167 202 KGPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
..-.+|+|.|+.|+||||+++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3557999999999999999999987
No 464
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.64 E-value=0.58 Score=60.34 Aligned_cols=83 Identities=16% Similarity=0.146 Sum_probs=54.0
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCC-----CCcCHHHHHHHHH
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLP-----NFVEFQSLMQHIQ 277 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 277 (923)
..+.|-|+|++|+|||+||.++... ....=..++|+++...++... ++.++.+.. .....++....+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 4578999999999999999988773 322223577888887776554 344442110 1123344555555
Q ss_pred HHh-cCCceEEEecCC
Q 039167 278 KHV-AGKKLLLVLDDV 292 (923)
Q Consensus 278 ~~l-~~kr~LlVlDdv 292 (923)
+.. ..+.-+||+|.+
T Consensus 1499 ~lvr~~~~~lVVIDsi 1514 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSV 1514 (2050)
T ss_dssp HHHHHTCCSEEEESCG
T ss_pred HHHhcCCCCEEEEcCh
Confidence 544 356779999998
No 465
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=89.60 E-value=0.99 Score=44.81 Aligned_cols=89 Identities=15% Similarity=0.141 Sum_probs=45.2
Q ss_pred EEEEEEecCCChHHHHHHHHhcC-ccccccc-ceEEEEEeCCcccHHHHHHHHHHHHhCCCC---------------CC-
Q 039167 205 HIISLVGMGGIGKTTLAQFAYNN-GDVEKNF-EKRIWVCVSDPFDEFRIARAIIEALTGCLP---------------NF- 266 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~-~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---------------~~- 266 (923)
+.+.|.|..|.||||+...+.-+ ....... ...+.+..........+.+.+...++.... ..
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 47899999999999876544322 1111111 224444444433334444444443332110 00
Q ss_pred ----cCHHHHHHHHHHHhcCCceEEEecCCCC
Q 039167 267 ----VEFQSLMQHIQKHVAGKKLLLVLDDVWN 294 (923)
Q Consensus 267 ----~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 294 (923)
...+.+.+.+.+.+.+ --+||+|.+..
T Consensus 157 ~Ivv~Tpg~l~~~l~~~l~~-~~~lVlDEah~ 187 (235)
T 3llm_A 157 SIMFCTVGVLLRKLEAGIRG-ISHVIVDEIHE 187 (235)
T ss_dssp EEEEEEHHHHHHHHHHCCTT-CCEEEECCTTS
T ss_pred eEEEECHHHHHHHHHhhhcC-CcEEEEECCcc
Confidence 1234444555443333 34789999965
No 466
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.51 E-value=0.17 Score=51.31 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=21.3
Q ss_pred CEEEEEEecCCChHHHHHHHHhcC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
-.+++|+|+.|+|||||.+.+..-
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999999763
No 467
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.47 E-value=0.22 Score=51.20 Aligned_cols=24 Identities=38% Similarity=0.319 Sum_probs=21.9
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
..++|.|+|+.|+||||||..+..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 457899999999999999999987
No 468
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=89.47 E-value=0.79 Score=49.70 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=23.4
Q ss_pred CCCCEEEEEEecCCChHHHHHHHHhc
Q 039167 201 QKGPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 201 ~~~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
....++..|.|.+|.||||+.++.++
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhc
Confidence 45789999999999999999999876
No 469
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.44 E-value=0.18 Score=50.22 Aligned_cols=24 Identities=29% Similarity=0.158 Sum_probs=21.2
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
....|.|.|+.|+||||+|+.+.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999987
No 470
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=89.43 E-value=0.66 Score=50.83 Aligned_cols=96 Identities=18% Similarity=0.123 Sum_probs=54.5
Q ss_pred HHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHH-HHHhcCcccccccc-eEEEEEeCCccc-HHHHHHHHHHHHhCC--
Q 039167 188 ELVDRLICENSIEQKGPHIISLVGMGGIGKTTLA-QFAYNNGDVEKNFE-KRIWVCVSDPFD-EFRIARAIIEALTGC-- 262 (923)
Q Consensus 188 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~s~~~~-~~~~~~~i~~~l~~~-- 262 (923)
+.++.|..-. .-+-++|+|.+|+|||+|| ..+.+.. +-+ .++++-+++..+ ..++.+.+...=...
T Consensus 151 raID~l~Pig-----rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~t 221 (502)
T 2qe7_A 151 KAIDSMIPIG-----RGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYT 221 (502)
T ss_dssp HHHHHSSCCB-----TTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTE
T ss_pred eecccccccc-----cCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCccee
Confidence 4556664321 3356899999999999996 5777742 244 346777776654 444555554321111
Q ss_pred -----CCCCcCHHH-----HHHHHHHHh--cCCceEEEecCC
Q 039167 263 -----LPNFVEFQS-----LMQHIQKHV--AGKKLLLVLDDV 292 (923)
Q Consensus 263 -----~~~~~~~~~-----~~~~l~~~l--~~kr~LlVlDdv 292 (923)
..+...... ..-.+.+++ +++.+||++||+
T Consensus 222 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 222 IVVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 011111111 112234444 589999999998
No 471
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=89.42 E-value=0.83 Score=50.11 Aligned_cols=96 Identities=18% Similarity=0.125 Sum_probs=54.8
Q ss_pred HHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHH-HHHhcCcccccccce-EEEEEeCCccc-HHHHHHHHHHHHhCC--
Q 039167 188 ELVDRLICENSIEQKGPHIISLVGMGGIGKTTLA-QFAYNNGDVEKNFEK-RIWVCVSDPFD-EFRIARAIIEALTGC-- 262 (923)
Q Consensus 188 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~s~~~~-~~~~~~~i~~~l~~~-- 262 (923)
+.++.|..-. .-+-++|+|.+|+|||+|| ..+.+.. .-+. ++++-+++..+ ..++.+.+...=...
T Consensus 164 raID~l~Pig-----rGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rt 234 (515)
T 2r9v_A 164 KAIDSMIPIG-----RGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYT 234 (515)
T ss_dssp HHHHHHSCEE-----TTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGE
T ss_pred cccccccccc-----cCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCccee
Confidence 4556664321 3356899999999999996 5777742 2443 46777776654 445555554321110
Q ss_pred -----CCCCcCHHH-----HHHHHHHHh--cCCceEEEecCC
Q 039167 263 -----LPNFVEFQS-----LMQHIQKHV--AGKKLLLVLDDV 292 (923)
Q Consensus 263 -----~~~~~~~~~-----~~~~l~~~l--~~kr~LlVlDdv 292 (923)
..+...... ..-.+.+++ +++.+||++||+
T Consensus 235 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 235 TVVVASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 111111111 112234444 589999999998
No 472
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=89.38 E-value=0.21 Score=57.78 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=35.4
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcC
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
..++|.+..++.+...+... ..+.|+|+.|+||||||+.+...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 35899988888877777432 47899999999999999999874
No 473
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=89.36 E-value=0.21 Score=52.32 Aligned_cols=24 Identities=42% Similarity=0.451 Sum_probs=21.8
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
...+|+|+|.+|+||||++..+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999988876
No 474
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.35 E-value=0.21 Score=46.46 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHhcC
Q 039167 205 HIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999764
No 475
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.34 E-value=0.094 Score=54.23 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=18.6
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
...+|+|.|+.|+||||+|+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999876
No 476
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=89.32 E-value=0.41 Score=58.36 Aligned_cols=21 Identities=29% Similarity=0.237 Sum_probs=19.6
Q ss_pred CEEEEEEecCCChHHHHHHHH
Q 039167 204 PHIISLVGMGGIGKTTLAQFA 224 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v 224 (923)
-.+++|+|+.|.||||+.+.+
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHH
Confidence 479999999999999999988
No 477
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.31 E-value=0.79 Score=52.72 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=21.7
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.-.+++|+|+.|.|||||++.+..-
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3468999999999999999999763
No 478
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.29 E-value=0.17 Score=48.13 Aligned_cols=22 Identities=41% Similarity=0.474 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHhcC
Q 039167 206 IISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999873
No 479
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=89.24 E-value=1.1 Score=49.38 Aligned_cols=55 Identities=9% Similarity=0.021 Sum_probs=36.4
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHh
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALT 260 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 260 (923)
.-.++.|.|.+|+||||+|..+....... .=..++|++.. .+...+...++....
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~~~~ 253 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMCSEA 253 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHHHHT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHHHHc
Confidence 34589999999999999998887642211 11256676654 455667666655443
No 480
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=89.21 E-value=1.3 Score=50.83 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.2
Q ss_pred CEEEEEEecCCChHHHHHHHHhcC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
-.+++|+|+.|.|||||++.+..-
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999653
No 481
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.17 E-value=0.37 Score=47.72 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=22.3
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
....|.|.|+.|+||||+++.+.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999884
No 482
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=89.10 E-value=3 Score=50.07 Aligned_cols=119 Identities=17% Similarity=0.149 Sum_probs=65.5
Q ss_pred EEEEEEecCCChHHHHHHHHhcCcccccccc----eEEEEEeCCc-------ccHH-----------HHHHHHHHHHhCC
Q 039167 205 HIISLVGMGGIGKTTLAQFAYNNGDVEKNFE----KRIWVCVSDP-------FDEF-----------RIARAIIEALTGC 262 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~~s~~-------~~~~-----------~~~~~i~~~l~~~ 262 (923)
.+++|+|+.|.|||||.+.+..- .+. .++ .. .+.+.+. .+.. .-...+++.++..
T Consensus 462 e~v~LiGpNGsGKSTLLk~LagG-~i~-g~~~~~~~~-~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~ 538 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIANG-QVD-GFPTQEECR-TVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFT 538 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHT-CST-TCCCTTTSC-EEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-CcC-CCcccccee-EEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCC
Confidence 57999999999999999999841 111 011 01 1122211 1111 2223344444431
Q ss_pred ------CCCCcC-HHHHHHHHHHHhcCCceEEEecCCCCC-ChhhHHHhHHhhhcCCCCcEEEEEecchHHHHH
Q 039167 263 ------LPNFVE-FQSLMQHIQKHVAGKKLLLVLDDVWNE-NFHKWEQFNNCLKNCLYGSKILITTRKEAVARI 328 (923)
Q Consensus 263 ------~~~~~~-~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 328 (923)
....-+ .+...-.|.+.+-.++-+|+||.--+. +...-..+...+.. .|.-||++|.+......
T Consensus 539 ~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~ 610 (986)
T 2iw3_A 539 DEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDN 610 (986)
T ss_dssp HHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHH
T ss_pred hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHH
Confidence 011112 222333466677778889999976322 33444556666655 46678888988766544
No 483
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=89.07 E-value=0.18 Score=48.34 Aligned_cols=110 Identities=10% Similarity=0.016 Sum_probs=54.9
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCCcccHHHHHHHHHHHHhCCCC--CCcCHHHHHHHHHHHh
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSDPFDEFRIARAIIEALTGCLP--NFVEFQSLMQHIQKHV 280 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l 280 (923)
.-++..++|..|.||||.+..+.++.. .......++ ....+ ...-...+...++...+ ...+.. .+.+.+
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~-~~g~kV~v~-k~~~d--~r~~~~~i~s~~g~~~~a~~~~~~~----~i~~~~ 78 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAK-IAKQKIQVF-KPEID--NRYSKEDVVSHMGEKEQAVAIKNSR----EILKYF 78 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEE-EEC---------CEEECTTSCEEECEEESSST----HHHHHC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEE-EeccC--ccchHHHHHhhcCCceeeEeeCCHH----HHHHHH
Confidence 347999999999999999977766422 222333332 21111 00000112222211100 001111 233344
Q ss_pred cCCceEEEecCCCCCChhhHHHhHHhhhcCCCCcEEEEEecch
Q 039167 281 AGKKLLLVLDDVWNENFHKWEQFNNCLKNCLYGSKILITTRKE 323 (923)
Q Consensus 281 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 323 (923)
.++--+|++|.+..-+.+..+.+....+. |..||+|.++.
T Consensus 79 ~~~~dvViIDEaqfl~~~~v~~l~~l~~~---~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 79 EEDTEVIAIDEVQFFDDEIVEIVNKIAES---GRRVICAGLDM 118 (191)
T ss_dssp CTTCSEEEECSGGGSCTHHHHHHHHHHHT---TCEEEEEECSB
T ss_pred hccCCEEEEECCCCCCHHHHHHHHHHHhC---CCEEEEEeccc
Confidence 44334999999865544445555544332 67899998853
No 484
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.99 E-value=0.2 Score=52.22 Aligned_cols=22 Identities=36% Similarity=0.410 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 039167 205 HIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 485
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.82 E-value=0.19 Score=48.63 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.1
Q ss_pred CEEEEEEecCCChHHHHHHHHhcC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999775
No 486
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.81 E-value=0.21 Score=49.83 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.2
Q ss_pred CCCEEEEEEecCCChHHHHHHHHhc
Q 039167 202 KGPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
....+|+|+|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3556899999999999999999876
No 487
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.72 E-value=0.21 Score=51.57 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=21.4
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.-.+++|+|+.|.|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 446899999999999999999876
No 488
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=88.67 E-value=0.29 Score=55.42 Aligned_cols=25 Identities=36% Similarity=0.360 Sum_probs=21.7
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.-.+++|+|..|+|||||++.++..
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998763
No 489
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=88.61 E-value=0.23 Score=50.60 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHhcC
Q 039167 206 IISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.++|+|+.|+|||||.+.++.-
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999763
No 490
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=88.61 E-value=0.67 Score=53.10 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.0
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
.-.+++|+|+.|.|||||++.+..
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTT
T ss_pred CCCEEEEECCCCChHHHHHHHHhc
Confidence 345899999999999999998865
No 491
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.59 E-value=0.26 Score=45.40 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.3
Q ss_pred EEEEEEecCCChHHHHHHHHhcC
Q 039167 205 HIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.-|.++|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999988764
No 492
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=88.48 E-value=0.33 Score=48.66 Aligned_cols=39 Identities=31% Similarity=0.310 Sum_probs=27.3
Q ss_pred CEEEEEEecCCChHHHHHHHHhcCcccccccceEEEEEeCC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNNGDVEKNFEKRIWVCVSD 244 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 244 (923)
-.++.|.|.+|+||||||.++... ....=..++|+....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccC
Confidence 358999999999999999877653 212223567776544
No 493
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=88.41 E-value=0.36 Score=51.05 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.2
Q ss_pred CEEEEEEecCCChHHHHHHHHhcC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
-.+++|+|+.|.|||||.+.+..-
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 358999999999999999999763
No 494
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=88.38 E-value=0.42 Score=51.24 Aligned_cols=47 Identities=17% Similarity=0.190 Sum_probs=32.5
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCChHHHHHHHHhcC
Q 039167 177 SEIFGRKDEKNELVDRLICENSIEQKGPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 177 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
..++|....+.++...+..-.. ....|.|.|..|.||+++|+.++..
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~----~~~~vli~GesGtGKe~lAr~ih~~ 175 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK----SKAPVLITGESGTGKEIVARLIHRY 175 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT----SCSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhc----cchhheEEeCCCchHHHHHHHHHHh
Confidence 3577877777666655532211 2224679999999999999999873
No 495
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.35 E-value=0.24 Score=50.89 Aligned_cols=23 Identities=35% Similarity=0.361 Sum_probs=20.6
Q ss_pred CEEEEEEecCCChHHHHHHHHhc
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
-.++.|+|++|+|||||+..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999988875
No 496
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=88.33 E-value=0.26 Score=51.43 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=21.3
Q ss_pred CCCCEEEEEEecCCChHHHHHHHHhc
Q 039167 201 QKGPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 201 ~~~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
....++|+|+|-||+||||+|..+..
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~ 63 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSA 63 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCceEEEEECCCCccHHHHHHHHHH
Confidence 34678999999999999999987765
No 497
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=88.33 E-value=0.26 Score=53.89 Aligned_cols=25 Identities=40% Similarity=0.442 Sum_probs=21.7
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
...+|.|+|.+|+||||++..+...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999888763
No 498
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.32 E-value=0.25 Score=47.06 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=21.2
Q ss_pred CEEEEEEecCCChHHHHHHHHhcC
Q 039167 204 PHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
-+.|.|.|+.|+||||||..+...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 367899999999999999999774
No 499
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.25 E-value=0.38 Score=51.45 Aligned_cols=24 Identities=29% Similarity=0.155 Sum_probs=21.8
Q ss_pred CCEEEEEEecCCChHHHHHHHHhc
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYN 226 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~ 226 (923)
...+++|+|+.|+|||||++.+..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456999999999999999999986
No 500
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.24 E-value=0.68 Score=45.15 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.0
Q ss_pred CCEEEEEEecCCChHHHHHHHHhcC
Q 039167 203 GPHIISLVGMGGIGKTTLAQFAYNN 227 (923)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (923)
.-..|.|.|+.|+||||+++.+.+.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999873
Done!