BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039172
(477 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IVN|A Chain A, Structure Of Up1 Protein
pdb|2IVO|A Chain A, Structure Of Up1 Protein
pdb|2IVO|B Chain B, Structure Of Up1 Protein
pdb|2IVO|C Chain C, Structure Of Up1 Protein
pdb|2IVO|D Chain D, Structure Of Up1 Protein
pdb|2IVP|A Chain A, Structure Of Up1 Protein
Length = 330
Score = 142 bits (357), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 109/346 (31%), Positives = 168/346 (48%), Gaps = 46/346 (13%)
Query: 73 LIILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQ 132
++ LGIE + +V + ++L+ V + L + GG+ PK A E H+ + P+++
Sbjct: 1 MLALGIEGTAHTLGIGIVSED-KVLANVFDT---LTTEKGGIHPKEAAEHHARLMKPLLR 56
Query: 133 EALHKANLTERDLSAVAVTIGPGLSLCLRVGVQKARKIAGQFNLPIVGVHHMEAHALVAR 192
+AL +A ++ D+ +A + GPGL LRV AR +A ++ PIVGV+H AH + +
Sbjct: 57 KALSEAGVSLDDIDVIAFSQGPGLGPALRVVATAARALAVKYRKPIVGVNHCIAHVEITK 116
Query: 193 QWLTMTRMQNDFLDLFNNIHIGQKDTSGHNLLVLAHNLGQYTQLGTTIDDAIGEAFDKTA 252
+ D + L+ SG N VLA G+Y G T+D IG A D A
Sbjct: 117 MFGV-----KDPVGLY---------VSGGNTQVLALEGGRYRVFGETLDIGIGNAIDVFA 162
Query: 253 KWLGLDMRRSGGPAVEKLALEGDAESVKFSTPMKQHKDCNFSYAGLKTQVRLAIESKNID 312
+ LGL GGP VEKLA +G+ K+ K + S++GL T+
Sbjct: 163 RELGLGF--PGGPKVEKLAEKGE----KYIELPYAVKGMDLSFSGLLTE----------- 205
Query: 313 SRIPISSTSCQDRKSRA-NIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVSGGVA 371
+ + K R ++A SFQ A L E ERA+ K E +V+ GGVA
Sbjct: 206 -----AIRKYRSGKYRVEDLAYSFQETAFAALVEVTERAVAHTEKDE-----VVLVGGVA 255
Query: 372 SNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGVMVAWTGIEHFCVG 417
+N +R L ++ ++ PP LC DNG M+A+TG+ + G
Sbjct: 256 ANNRLREMLRIMTEDRGIKFFVPPYDLCRDNGAMIAYTGLRMYKAG 301
>pdb|3ENH|A Chain A, Crystal Structure Of Cgi121BUD32KAE1 COMPLEX
pdb|3ENH|B Chain B, Crystal Structure Of Cgi121BUD32KAE1 COMPLEX
pdb|3EN9|A Chain A, Structure Of The Methanococcus Jannaschii Kae1-Bud32
Fusion Protein
pdb|3EN9|B Chain B, Structure Of The Methanococcus Jannaschii Kae1-Bud32
Fusion Protein
Length = 540
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 99/352 (28%), Positives = 158/352 (44%), Gaps = 45/352 (12%)
Query: 68 SAKDDLIILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAI 127
A D +I LG+E + + T +V +GE+L + G+ P+ A + H+
Sbjct: 1 GAMDPMICLGLEGTAEKTGVGIVTSDGEVL---FNKTIMYKPPKQGINPREAADHHAETF 57
Query: 128 DPVVQEALHKANLTERDLSAVAVTIGPGLSLCLRVGVQKARKIAGQFNLPIVGVHHMEAH 187
+++EA + E DL +A + GPGL LRV AR ++ PI+GV+H AH
Sbjct: 58 PKLIKEAFEVVDKNEIDL--IAFSQGPGLGPSLRVTATVARTLSLTLKKPIIGVNHCIAH 115
Query: 188 ALVARQWLTMTRMQNDFLDLFNNIHIGQKDTSGHNLLVLAHNLGQYTQLGTTIDDAIGEA 247
+ + +T D L L+ SG N V+A+ +Y G T+D A+G
Sbjct: 116 IEIGK----LTTEAEDPLTLY---------VSGGNTQVIAYVSKKYRVFGETLDIAVGNC 162
Query: 248 FDKTAKWLGLDMRRSGGPAVEKLALEGDAESVKFSTPMKQHKDCNFSYAGLKTQVRLAIE 307
D+ A+++ L GGP +E+LA +G K K + +++GL T A+
Sbjct: 163 LDQFARYVNLP--HPGGPYIEELARKGK----KLVDLPYTVKGMDIAFSGLLTA---AMR 213
Query: 308 SKNIDSRIPISSTSCQDRKSRANIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVS 367
+ + R+ +I S Q A L E ERA+ K E +++
Sbjct: 214 AYDAGERL-------------EDICYSLQEYAFSMLTEITERALAHTNKGE-----VMLV 255
Query: 368 GGVASNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGVMVAWTGIEHFCVGRF 419
GGVA+N +R L + ++ PP C DNG M+AW G+ GR+
Sbjct: 256 GGVAANNRLREMLKAMCEGQNVDFYVPPKEFCGDNGAMIAWLGLLMHKNGRW 307
>pdb|2VWB|A Chain A, Structure Of The Archaeal Kae1-Bud32 Fusion Protein
Mj1130: A Model For The Eukaryotic Ekc-Keops Subcomplex
Involved In Transcription And Telomere Homeostasis.
pdb|2VWB|B Chain B, Structure Of The Archaeal Kae1-Bud32 Fusion Protein
Mj1130: A Model For The Eukaryotic Ekc-Keops Subcomplex
Involved In Transcription And Telomere Homeostasis
Length = 535
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/347 (27%), Positives = 156/347 (44%), Gaps = 45/347 (12%)
Query: 73 LIILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQ 132
+I LG+E + + T +V +GE+L + G+ P+ A + H+ +++
Sbjct: 1 MICLGLEGTAEKTGVGIVTSDGEVL---FNKTIMYKPPKQGINPREAADHHAETFPKLIK 57
Query: 133 EALHKANLTERDLSAVAVTIGPGLSLCLRVGVQKARKIAGQFNLPIVGVHHMEAHALVAR 192
EA + E DL +A + GPGL LRV AR ++ PI+GV+H AH + +
Sbjct: 58 EAFEVVDKNEIDL--IAFSQGPGLGPSLRVTATVARTLSLTLKKPIIGVNHCIAHIEIGK 115
Query: 193 QWLTMTRMQNDFLDLFNNIHIGQKDTSGHNLLVLAHNLGQYTQLGTTIDDAIGEAFDKTA 252
+T D L L+ SG N V+A+ +Y G T+D A+G D+ A
Sbjct: 116 ----LTTEAEDPLTLY---------VSGGNTQVIAYVSKKYRVFGETLDIAVGNCLDQFA 162
Query: 253 KWLGLDMRRSGGPAVEKLALEGDAESVKFSTPMKQHKDCNFSYAGLKTQVRLAIESKNID 312
+++ L GGP +E+LA +G K K + +++GL T A+ + +
Sbjct: 163 RYVNLP--HPGGPYIEELARKGK----KLVDLPYTVKGMDIAFSGLLTA---AMRAYDAG 213
Query: 313 SRIPISSTSCQDRKSRANIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVSGGVAS 372
R+ +I S Q A L E ERA+ K E +++ GGVA+
Sbjct: 214 ERL-------------EDICYSLQEYAFSMLTEITERALAHTNKGE-----VMLVGGVAA 255
Query: 373 NKYVRARLDRAVKNNSLQLVCPPPSLCTDNGVMVAWTGIEHFCVGRF 419
N +R L + ++ PP C DNG M+AW G+ GR+
Sbjct: 256 NNRLREMLKAMCEGQNVDFYVPPKEFCGDNGAMIAWLGLLMHKNGRW 302
>pdb|3ENO|A Chain A, Crystal Structure Of Pyrococcus Furiosus Pcc1 In Complex
With Thermoplasma Acidophilum Kae1
pdb|3ENO|B Chain B, Crystal Structure Of Pyrococcus Furiosus Pcc1 In Complex
With Thermoplasma Acidophilum Kae1
Length = 334
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 98/354 (27%), Positives = 160/354 (45%), Gaps = 52/354 (14%)
Query: 68 SAKDDLIILGIETSCDDTAAAVVRGNGEILSQVVSSQADLL-AKYGGVAPKMAEEAHSLA 126
A D +I+LG+E + + ++ S++++ ++ + K GG+ P A HS
Sbjct: 1 GAMDPMIVLGLEGTAHTISCGIIDE-----SRILAMESSMYRPKTGGIRPLDAAVHHSEV 55
Query: 127 IDPVVQEALHKANLTERDLSAVAVTIGPGLSLCLRVGVQKARKIAGQFNLPIVGVHHMEA 186
ID V+ AL KA ++ D+ + ++GPGL+ LRV AR I+ PI+GV+H
Sbjct: 56 IDTVISRALEKAKISIHDIDLIGFSMGPGLAPSLRVTATAARTISVLTGKPIIGVNHPLG 115
Query: 187 HALVARQWLTMTRMQNDFLDLFNNIHIGQKDTSGHNLLVLAHNLGQYTQLGTTIDDAIGE 246
H + R+ D + L+ SG N V+AH G+Y LG T+D IG
Sbjct: 116 HIEIGRRVTGAI----DPVMLY---------VSGGNTQVIAHVNGRYRVLGETLDIGIGN 162
Query: 247 AFDKTAKWLGLDMRRSGGPAVEKLALEGDAESVKFSTPMKQHKDCNFSYAGLKTQVRLAI 306
DK A+ G+ GGP +EKLA++G + D +S G+ T
Sbjct: 163 MIDKFAREAGIPF--PGGPEIEKLAMKG-----------TKLLDLPYSVKGMDTAFS--- 206
Query: 307 ESKNIDSRIPISSTSCQDRKSR---ANIAASFQRVAVLHLEERCERAIEWALKIEPSIKH 363
I + + Q K+ +I+ S Q A L E ERA+ + K E
Sbjct: 207 ---------GILTAALQYLKTGQAIEDISYSIQETAFAMLVEVLERALYVSGKDE----- 252
Query: 364 LVVSGGVASNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGVMVAWTGIEHFCVG 417
++++GGVA N+ +R + + ++ C DNG+M+A + + G
Sbjct: 253 ILMAGGVALNRRLRDMVTNMAREAGIRSYLTDREYCMDNGIMIAQAALLMYKSG 306
>pdb|3R6M|A Chain A, Crystal Structure Of Vibrio Parahaemolyticus Yeaz
pdb|3R6M|B Chain B, Crystal Structure Of Vibrio Parahaemolyticus Yeaz
pdb|3R6M|C Chain C, Crystal Structure Of Vibrio Parahaemolyticus Yeaz
pdb|3R6M|D Chain D, Crystal Structure Of Vibrio Parahaemolyticus Yeaz
Length = 213
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 17/114 (14%)
Query: 75 ILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEA 134
IL I+T+ ++ + A++ + QV+S VAP+ H+ + P+V E
Sbjct: 4 ILAIDTATENCSVALL-----VNDQVISRSE--------VAPR----DHTKKVLPMVDEV 46
Query: 135 LHKANLTERDLSAVAVTIGPGLSLCLRVGVQKARKIAGQFNLPIVGVHHMEAHA 188
L +A LT +DL A+A GPG +R+G+ A+ +A LP++GV + A A
Sbjct: 47 LKEAGLTLQDLDALAFGRGPGSFTGVRIGIGIAQGLAFGAELPMIGVSTLAAMA 100
>pdb|2GEL|A Chain A, 2.05a Crystal Structure Of Salmonella Typhimurium Yeaz,
Form B
pdb|2GEL|G Chain G, 2.05a Crystal Structure Of Salmonella Typhimurium Yeaz,
Form B
pdb|2GEM|A Chain A, 2.1a Crystal Structure Of Salmonella Tyhpimurium Yeaz, A
Putative Gram-Negative Rpf, Form-A
pdb|2GEM|B Chain B, 2.1a Crystal Structure Of Salmonella Tyhpimurium Yeaz, A
Putative Gram-Negative Rpf, Form-A
Length = 231
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%)
Query: 123 HSLAIDPVVQEALHKANLTERDLSAVAVTIGPGLSLCLRVGVQKARKIAGQFNLPIVGVH 182
H+ I P+VQE L + + ++ A+A GPG +R+G+ A+ +A NLP++GV
Sbjct: 34 HTQRILPMVQEILAASGASLNEIDALAFGRGPGSFTGVRIGIGIAQGLALGANLPMIGVS 93
Query: 183 HMEAHA 188
+ A
Sbjct: 94 TLATMA 99
>pdb|1OKJ|A Chain A, Crystal Structure Of The Essential E. Coli Yeaz Protein By
Mad Method Using The Gadolinium Complex "dotma"
pdb|1OKJ|B Chain B, Crystal Structure Of The Essential E. Coli Yeaz Protein By
Mad Method Using The Gadolinium Complex "dotma"
pdb|1OKJ|C Chain C, Crystal Structure Of The Essential E. Coli Yeaz Protein By
Mad Method Using The Gadolinium Complex "dotma"
pdb|1OKJ|D Chain D, Crystal Structure Of The Essential E. Coli Yeaz Protein By
Mad Method Using The Gadolinium Complex "dotma"
Length = 251
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 123 HSLAIDPVVQEALHKANLTERDLSAVAVTIGPGLSLCLRVGVQKARKIAGQFNLPIVGV 181
H+ I P+VQ+ L + + D++A+A GPG +R+G+ A+ +A LP++GV
Sbjct: 54 HTQRILPMVQDILTTSGTSLTDINALAYGRGPGSFTGVRIGIGIAQGLALGAELPMIGV 112
>pdb|4G9I|A Chain A, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|B Chain B, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|C Chain C, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|D Chain D, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|E Chain E, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|F Chain F, Crystal Structure Of T.Kodakarensis Hypf
Length = 772
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 71/176 (40%), Gaps = 30/176 (17%)
Query: 236 LGTTIDDAIGEAFDKTAKWLGLDMRR--SGGPA--VEKLALEGDAESVKFSTPMKQHKDC 291
+ T + G D A L + RR G PA +E A +G + +KF P++
Sbjct: 603 INTAYASSTGRVLDAIAVLLNVAYRRHYEGEPAXKLESFAFKGKND-LKFEVPVEGE--- 658
Query: 292 NFSYAGLKTQVRLAIESKNIDSRIPISSTSCQDRKSRANIAASFQRVAVLHLEERCERAI 351
+R+ ++I I +S + + +A +F AV ERA
Sbjct: 659 ---------LIRVEELFQSILEAIEGASPADIAYSAHLALARAFAHTAV-------ERAR 702
Query: 352 EWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGVMVA 407
E+ +K++ +SGGVA N+ + + + V+ N L DNGV V
Sbjct: 703 EFG------VKNVALSGGVAYNELITKXIRKVVEANGLNFHVTTEVPRGDNGVNVG 752
>pdb|3ABO|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And Ethanolamine
pdb|3ABO|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And Ethanolamine
pdb|3ABQ|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And
2-Amino-1-Propanol
pdb|3ABQ|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And
2-Amino-1-Propanol
pdb|3ABR|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl (Substrate-Free
Form)
pdb|3ABR|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl (Substrate-Free
Form)
pdb|3ABS|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escheri Complexed With Adeninylpentylcobalamin And
Ethanolamine
pdb|3ABS|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escheri Complexed With Adeninylpentylcobalamin And
Ethanolamine
pdb|3ANY|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And
(R)-2-Amino-1-Propanol
pdb|3ANY|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And
(R)-2-Amino-1-Propanol
pdb|3AO0|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And
(S)-2-Amino-1-Propanol
pdb|3AO0|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And
(S)-2-Amino-1-Propanol
Length = 453
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 62 FGQIKMSAKDDL--IILGIETSCDDTAAAVVRGNGEILSQV--VSSQADLLAKYGGVAPK 117
+ QIK + +L +L ETS DD A E+++ V + S ADL+ YG
Sbjct: 85 YNQIKNWSISELREYVLSDETSVDDIAFTRKGLTSEVVAAVAKICSNADLI--YGAKKMP 142
Query: 118 MAEEAHSLAIDPVVQEALHKANLTERDLSAVAVTIGPGLSL 158
+ ++A++ P A + N T D+ ++A I GLS
Sbjct: 143 VIKKANTTIGIPGTFSARLQPNDTRDDVQSIAAQIYEGLSF 183
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,659,387
Number of Sequences: 62578
Number of extensions: 479158
Number of successful extensions: 1317
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1295
Number of HSP's gapped (non-prelim): 11
length of query: 477
length of database: 14,973,337
effective HSP length: 102
effective length of query: 375
effective length of database: 8,590,381
effective search space: 3221392875
effective search space used: 3221392875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)