Query 039172
Match_columns 477
No_of_seqs 325 out of 2402
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 07:01:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039172.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039172hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0533 QRI7 Metal-dependent p 100.0 2.8E-93 6E-98 715.8 35.9 338 73-445 1-338 (342)
2 PTZ00340 O-sialoglycoprotein e 100.0 2.8E-84 6.1E-89 660.7 35.7 335 73-444 1-339 (345)
3 KOG2707 Predicted metalloprote 100.0 5.4E-84 1.2E-88 641.5 31.9 367 74-463 33-404 (405)
4 PRK09604 UGMP family protein; 100.0 1.3E-72 2.9E-77 577.0 38.2 329 73-444 1-329 (332)
5 TIGR00329 gcp_kae1 metallohydr 100.0 1.6E-69 3.4E-74 548.5 33.2 305 76-407 1-305 (305)
6 TIGR03723 bact_gcp putative gl 100.0 8.5E-69 1.8E-73 545.1 35.5 314 75-415 1-314 (314)
7 PRK14878 UGMP family protein; 100.0 1.5E-68 3.2E-73 545.3 34.8 315 76-443 1-316 (323)
8 TIGR03722 arch_KAE1 universal 100.0 2.2E-67 4.8E-72 536.6 34.7 317 76-444 1-318 (322)
9 PRK09605 bifunctional UGMP fam 100.0 7.6E-67 1.6E-71 565.1 36.4 303 73-418 1-303 (535)
10 PF00814 Peptidase_M22: Glycop 100.0 5.6E-61 1.2E-65 477.9 25.4 268 95-408 1-268 (268)
11 KOG2708 Predicted metalloprote 100.0 3.5E-53 7.6E-58 401.2 28.2 330 72-445 1-331 (336)
12 TIGR00143 hypF [NiFe] hydrogen 100.0 1.6E-29 3.5E-34 280.5 30.3 243 127-411 401-709 (711)
13 COG2192 Predicted carbamoyl tr 100.0 3.1E-28 6.7E-33 256.5 21.8 307 73-418 1-339 (555)
14 COG0068 HypF Hydrogenase matur 100.0 1.4E-26 3.1E-31 248.7 26.6 326 31-412 351-745 (750)
15 TIGR03725 bact_YeaZ universal 99.9 4.8E-22 1E-26 190.4 12.9 100 75-190 1-100 (202)
16 COG1214 Inactive homolog of me 99.8 4.9E-21 1.1E-25 185.9 11.8 130 73-220 1-133 (220)
17 PF02543 CmcH_NodU: Carbamoylt 99.7 3.7E-17 8E-22 169.5 15.2 206 190-418 2-217 (360)
18 TIGR03192 benz_CoA_bzdQ benzoy 99.7 2.3E-14 5.1E-19 143.8 25.9 240 70-395 29-272 (293)
19 TIGR02261 benz_CoA_red_D benzo 99.6 6.8E-14 1.5E-18 138.7 25.2 238 74-394 2-245 (262)
20 COG1924 Activator of 2-hydroxy 99.6 8.5E-14 1.9E-18 142.0 25.5 248 68-404 130-381 (396)
21 TIGR03286 methan_mark_15 putat 99.6 3.6E-13 7.8E-18 140.1 28.0 243 71-396 142-388 (404)
22 TIGR00241 CoA_E_activ CoA-subs 99.6 1.1E-12 2.4E-17 129.4 23.8 241 74-409 1-246 (248)
23 PRK13317 pantothenate kinase; 99.4 1.7E-10 3.6E-15 116.0 26.8 247 72-396 1-259 (277)
24 TIGR02259 benz_CoA_red_A benzo 99.3 4.4E-10 9.6E-15 116.4 21.1 175 180-409 250-429 (432)
25 TIGR00555 panK_eukar pantothen 98.8 1.3E-06 2.9E-11 87.9 23.4 257 75-396 2-267 (279)
26 PF01869 BcrAD_BadFG: BadF/Bad 98.2 0.00071 1.5E-08 67.4 23.9 150 76-257 1-154 (271)
27 PRK03011 butyrate kinase; Prov 97.9 0.0072 1.6E-07 63.3 25.4 106 72-183 1-129 (358)
28 PRK09585 anmK anhydro-N-acetyl 97.6 0.0087 1.9E-07 62.7 20.8 233 126-418 72-343 (365)
29 COG3426 Butyrate kinase [Energ 97.3 0.096 2.1E-06 52.9 22.7 102 73-182 3-129 (358)
30 PF03702 UPF0075: Uncharacteri 97.3 0.008 1.7E-07 63.0 15.8 231 126-415 69-340 (364)
31 COG1940 NagC Transcriptional r 97.3 0.18 3.9E-06 51.1 25.1 111 70-193 3-125 (314)
32 PRK09557 fructokinase; Reviewe 97.2 0.25 5.4E-06 49.9 24.8 104 74-193 1-115 (301)
33 TIGR00744 ROK_glcA_fam ROK fam 97.0 0.51 1.1E-05 47.8 27.3 105 76-193 1-116 (318)
34 PRK13310 N-acetyl-D-glucosamin 97.0 0.24 5.2E-06 50.1 22.6 103 75-193 2-115 (303)
35 PRK05082 N-acetylmannosamine k 96.7 0.76 1.6E-05 46.1 25.0 101 73-192 1-114 (291)
36 TIGR02707 butyr_kinase butyrat 96.7 0.34 7.3E-06 50.7 21.6 66 75-149 2-70 (351)
37 COG2971 Predicted N-acetylgluc 96.4 0.61 1.3E-05 47.6 20.5 75 71-153 3-77 (301)
38 COG2377 Predicted molecular ch 96.2 0.62 1.3E-05 48.7 19.8 82 327-418 264-348 (371)
39 PLN02920 pantothenate kinase 1 96.1 2.5 5.4E-05 44.9 25.7 218 142-396 94-337 (398)
40 PRK09698 D-allose kinase; Prov 95.8 2.4 5.2E-05 42.7 24.6 103 74-191 5-121 (302)
41 PF03630 Fumble: Fumble ; Int 95.5 1.1 2.5E-05 46.7 18.4 207 143-396 82-327 (341)
42 PRK00976 hypothetical protein; 95.2 1.7 3.7E-05 45.0 18.0 63 73-155 1-63 (326)
43 PF02782 FGGY_C: FGGY family o 94.9 0.12 2.6E-06 48.5 8.3 63 327-395 119-181 (198)
44 PRK15080 ethanolamine utilizat 94.7 5.1 0.00011 40.1 26.6 60 339-409 205-264 (267)
45 PF00370 FGGY_N: FGGY family o 94.1 0.16 3.6E-06 49.5 7.6 77 74-152 1-77 (245)
46 PTZ00297 pantothenate kinase; 93.4 7.3 0.00016 48.1 21.1 66 326-396 1362-1431(1452)
47 smart00732 YqgFc Likely ribonu 93.2 0.46 1E-05 39.4 7.7 88 73-182 1-91 (99)
48 PLN02295 glycerol kinase 92.5 0.39 8.4E-06 52.5 8.1 77 74-152 1-81 (512)
49 COG0554 GlpK Glycerol kinase [ 92.4 0.34 7.5E-06 52.2 7.1 109 326-454 371-479 (499)
50 PRK00039 ruvC Holliday junctio 92.3 0.75 1.6E-05 43.0 8.6 24 72-95 1-24 (164)
51 PLN02902 pantothenate kinase 91.7 7.6 0.00016 45.1 17.1 217 143-396 144-386 (876)
52 PRK00047 glpK glycerol kinase; 91.6 0.57 1.2E-05 50.9 8.0 77 74-152 6-82 (498)
53 TIGR01315 5C_CHO_kinase FGGY-f 91.5 0.56 1.2E-05 51.7 7.9 77 75-153 2-78 (541)
54 PRK10939 autoinducer-2 (AI-2) 91.0 0.9 2E-05 49.7 8.8 77 74-152 4-82 (520)
55 TIGR01311 glycerol_kin glycero 90.9 0.77 1.7E-05 49.9 8.2 76 74-151 2-77 (493)
56 PF00012 HSP70: Hsp70 protein; 90.6 23 0.00049 39.2 19.5 69 343-417 311-379 (602)
57 PLN02669 xylulokinase 90.6 1.5 3.2E-05 48.7 10.2 84 327-418 417-501 (556)
58 PTZ00294 glycerol kinase-like 90.4 1 2.2E-05 49.2 8.4 76 74-152 3-81 (504)
59 COG0554 GlpK Glycerol kinase [ 90.3 1.4 3.1E-05 47.6 9.2 80 72-153 4-83 (499)
60 TIGR01312 XylB D-xylulose kina 89.6 0.99 2.1E-05 48.5 7.6 80 76-157 1-81 (481)
61 TIGR01234 L-ribulokinase L-rib 89.0 1.3 2.8E-05 48.7 8.0 77 74-152 2-90 (536)
62 KOG2201 Pantothenate kinase Pa 88.6 2.8 6E-05 43.4 9.3 171 166-373 115-317 (371)
63 PRK05183 hscA chaperone protei 88.2 50 0.0011 37.2 23.0 65 343-413 311-375 (616)
64 PF00480 ROK: ROK family; Int 88.1 6.9 0.00015 35.9 11.2 99 77-193 1-110 (179)
65 COG1070 XylB Sugar (pentulose 87.5 2.5 5.5E-05 46.1 9.1 83 72-156 3-87 (502)
66 PRK04123 ribulokinase; Provisi 87.4 2.1 4.6E-05 47.1 8.5 78 74-152 4-87 (548)
67 TIGR01312 XylB D-xylulose kina 87.1 4 8.6E-05 43.8 10.2 83 327-419 360-442 (481)
68 PRK15027 xylulokinase; Provisi 86.8 2.3 5E-05 46.1 8.3 83 327-419 357-439 (484)
69 PRK13311 N-acetyl-D-glucosamin 86.8 8.6 0.00019 37.9 11.7 102 75-192 2-114 (256)
70 TIGR02529 EutJ ethanolamine ut 86.7 1.1 2.3E-05 44.3 5.1 48 340-395 179-226 (239)
71 TIGR01991 HscA Fe-S protein as 86.6 60 0.0013 36.4 24.6 64 343-412 295-358 (599)
72 PLN02669 xylulokinase 86.5 2 4.4E-05 47.7 7.7 79 72-151 7-96 (556)
73 PRK14101 bifunctional glucokin 86.2 20 0.00044 40.4 15.6 96 74-190 19-122 (638)
74 PRK00047 glpK glycerol kinase; 85.5 4.9 0.00011 43.7 9.9 83 327-419 373-455 (498)
75 TIGR01314 gntK_FGGY gluconate 85.4 2.9 6.4E-05 45.5 8.2 79 74-155 1-80 (505)
76 PRK10331 L-fuculokinase; Provi 85.0 4.7 0.0001 43.5 9.5 64 327-396 359-422 (470)
77 PTZ00294 glycerol kinase-like 84.7 5.7 0.00012 43.3 10.0 83 327-419 376-458 (504)
78 TIGR02628 fuculo_kin_coli L-fu 84.6 3.4 7.3E-05 44.6 8.1 83 327-419 363-445 (465)
79 TIGR01314 gntK_FGGY gluconate 84.4 5.4 0.00012 43.5 9.7 83 327-419 371-453 (505)
80 PRK15027 xylulokinase; Provisi 84.4 6.9 0.00015 42.4 10.5 75 74-152 1-75 (484)
81 PRK10939 autoinducer-2 (AI-2) 84.2 5.2 0.00011 43.8 9.5 78 327-410 379-457 (520)
82 KOG2517 Ribulose kinase and re 83.9 3.9 8.5E-05 44.8 8.2 66 325-397 382-448 (516)
83 TIGR02627 rhamnulo_kin rhamnul 83.6 4.8 0.0001 43.2 8.8 81 327-419 357-438 (454)
84 PRK00109 Holliday junction res 83.1 10 0.00023 34.3 9.4 91 72-183 3-97 (138)
85 PRK10640 rhaB rhamnulokinase; 83.0 6.9 0.00015 42.4 9.7 82 327-419 345-426 (471)
86 cd00529 RuvC_resolvase Hollida 83.0 7.2 0.00016 35.8 8.5 20 74-93 1-20 (154)
87 TIGR01311 glycerol_kin glycero 82.7 6 0.00013 43.0 9.1 63 327-395 369-431 (493)
88 PF07318 DUF1464: Protein of u 82.4 69 0.0015 33.6 19.9 28 359-386 259-286 (343)
89 COG4020 Uncharacterized protei 82.3 4.6 0.0001 40.4 7.2 67 72-155 2-68 (332)
90 COG1070 XylB Sugar (pentulose 81.4 8.5 0.00018 42.1 9.7 63 327-395 371-433 (502)
91 PRK10331 L-fuculokinase; Provi 80.8 6.6 0.00014 42.4 8.6 79 74-155 3-83 (470)
92 TIGR02628 fuculo_kin_coli L-fu 79.7 10 0.00023 40.8 9.7 76 74-152 2-78 (465)
93 PLN02295 glycerol kinase 79.6 11 0.00024 41.2 9.9 86 327-419 377-464 (512)
94 PRK04123 ribulokinase; Provisi 79.1 10 0.00022 41.8 9.5 81 327-418 409-490 (548)
95 PF02075 RuvC: Crossover junct 78.1 6.1 0.00013 36.2 6.3 20 75-94 1-20 (149)
96 TIGR01234 L-ribulokinase L-rib 77.0 15 0.00032 40.5 10.0 82 327-419 406-488 (536)
97 TIGR01315 5C_CHO_kinase FGGY-f 76.0 19 0.00042 39.7 10.5 79 329-418 416-494 (541)
98 PF03652 UPF0081: Uncharacteri 74.8 8 0.00017 34.9 6.0 90 73-183 1-95 (135)
99 COG1069 AraB Ribulose kinase [ 74.8 16 0.00034 40.4 9.1 84 328-419 400-483 (544)
100 PRK07157 acetate kinase; Provi 74.0 13 0.00027 39.8 8.0 77 339-415 298-399 (400)
101 PRK01433 hscA chaperone protei 72.7 1.7E+02 0.0037 32.9 22.2 64 341-412 291-354 (595)
102 COG1069 AraB Ribulose kinase [ 72.2 8.3 0.00018 42.4 6.3 77 74-152 4-81 (544)
103 PF02801 Ketoacyl-synt_C: Beta 72.0 3.8 8.2E-05 35.7 3.1 63 126-189 26-92 (119)
104 PRK13410 molecular chaperone D 69.2 2.1E+02 0.0046 32.7 23.8 70 342-417 310-379 (668)
105 PRK00180 acetate kinase A/prop 68.8 22 0.00048 38.1 8.5 77 339-415 301-400 (402)
106 PRK12440 acetate kinase; Revie 68.6 9.9 0.00021 40.5 5.8 50 339-389 299-350 (397)
107 PRK07058 acetate kinase; Provi 66.2 31 0.00066 36.9 8.9 75 340-414 298-390 (396)
108 PLN02192 3-ketoacyl-CoA syntha 66.2 15 0.00033 40.5 6.8 67 119-186 171-238 (511)
109 PRK13318 pantothenate kinase; 65.1 20 0.00043 35.5 7.0 68 75-157 2-70 (258)
110 PRK00290 dnaK molecular chaper 62.9 2.6E+02 0.0057 31.4 25.0 70 342-417 308-377 (627)
111 PRK13321 pantothenate kinase; 62.0 22 0.00047 35.3 6.6 62 75-151 2-63 (256)
112 TIGR00228 ruvC crossover junct 61.9 31 0.00068 32.1 7.1 92 75-182 1-100 (156)
113 COG1712 Predicted dinucleotide 59.7 26 0.00057 34.8 6.4 38 359-396 83-120 (255)
114 COG0816 Predicted endonuclease 59.6 83 0.0018 28.8 9.3 90 72-183 1-96 (141)
115 KOG1250 Threonine/serine dehyd 59.5 19 0.00041 38.5 5.7 82 130-222 204-287 (457)
116 PF00108 Thiolase_N: Thiolase, 59.0 11 0.00024 37.7 3.9 71 110-183 16-86 (264)
117 PTZ00400 DnaK-type molecular c 59.0 3.2E+02 0.0069 31.2 22.0 64 343-412 350-413 (663)
118 PRK08304 stage V sporulation p 58.6 21 0.00044 37.3 5.8 53 124-183 57-109 (337)
119 PLN02377 3-ketoacyl-CoA syntha 58.2 25 0.00055 38.7 6.8 66 121-188 169-236 (502)
120 PLN02854 3-ketoacyl-CoA syntha 57.8 26 0.00056 38.8 6.8 66 121-188 185-252 (521)
121 PF01890 CbiG_C: Cobalamin syn 57.1 22 0.00048 31.4 5.1 51 125-182 15-65 (121)
122 TIGR00016 ackA acetate kinase. 55.0 29 0.00062 37.2 6.3 53 339-391 305-359 (404)
123 PF05378 Hydant_A_N: Hydantoin 53.8 37 0.00081 31.9 6.3 62 76-152 2-64 (176)
124 PF14574 DUF4445: Domain of un 53.7 28 0.0006 37.4 6.1 80 73-154 1-93 (412)
125 PF02593 dTMP_synthase: Thymid 53.2 27 0.00058 34.3 5.4 42 359-402 75-116 (217)
126 CHL00094 dnaK heat shock prote 52.7 3.8E+02 0.0083 30.2 24.4 52 360-417 328-379 (621)
127 CHL00203 fabH 3-oxoacyl-acyl-c 52.6 22 0.00047 36.3 4.9 45 124-177 225-269 (326)
128 PRK12404 stage V sporulation p 51.4 68 0.0015 33.5 8.2 50 125-182 56-106 (334)
129 KOG4417 Predicted endonuclease 50.9 36 0.00077 33.3 5.6 101 73-182 42-150 (261)
130 PRK13324 pantothenate kinase; 49.8 1.7E+02 0.0037 29.3 10.7 67 75-155 2-69 (258)
131 PRK07027 cobalamin biosynthesi 49.4 37 0.00081 30.2 5.3 51 125-182 17-67 (126)
132 TIGR02845 spore_V_AD stage V s 48.3 41 0.00089 35.0 6.1 53 124-183 51-103 (327)
133 PRK08963 fadI 3-ketoacyl-CoA t 48.3 21 0.00046 38.2 4.2 55 125-183 31-89 (428)
134 PF14639 YqgF: Holliday-juncti 47.9 2.2E+02 0.0049 26.1 10.7 98 73-189 5-112 (150)
135 PRK06205 acetyl-CoA acetyltran 47.8 24 0.00053 37.4 4.6 30 124-153 27-56 (404)
136 PRK08235 acetyl-CoA acetyltran 46.7 24 0.00052 37.4 4.3 58 125-183 28-86 (393)
137 PRK13331 pantothenate kinase; 46.5 73 0.0016 31.9 7.4 64 71-156 5-69 (251)
138 PLN02932 3-ketoacyl-CoA syntha 46.4 49 0.0011 36.3 6.6 68 120-189 144-213 (478)
139 PRK07108 acetyl-CoA acetyltran 46.2 27 0.00058 37.1 4.5 54 126-183 30-88 (392)
140 PF08392 FAE1_CUT1_RppA: FAE1/ 45.4 46 0.001 34.1 5.8 37 120-156 79-116 (290)
141 PRK12379 propionate/acetate ki 44.4 47 0.001 35.5 5.9 113 72-190 4-125 (396)
142 PF00871 Acetate_kinase: Aceto 44.3 34 0.00073 36.4 4.9 77 74-151 1-88 (388)
143 COG2433 Uncharacterized conser 44.1 1.8E+02 0.0039 32.8 10.4 125 72-210 1-137 (652)
144 PF02302 PTS_IIB: PTS system, 43.6 22 0.00047 28.9 2.7 32 364-395 4-35 (90)
145 PRK08313 acetyl-CoA acetyltran 43.5 31 0.00068 36.4 4.5 58 124-182 25-83 (386)
146 COG0282 ackA Acetate kinase [E 43.1 57 0.0012 34.8 6.2 115 73-191 1-129 (396)
147 PRK12397 propionate kinase; Re 43.0 54 0.0012 35.2 6.2 76 339-414 300-393 (404)
148 PRK09051 beta-ketothiolase; Pr 43.0 31 0.00066 36.7 4.4 60 124-183 28-88 (394)
149 PRK05656 acetyl-CoA acetyltran 42.6 32 0.00069 36.4 4.5 28 125-152 28-55 (393)
150 PRK06366 acetyl-CoA acetyltran 42.5 30 0.00064 36.6 4.2 30 123-152 26-55 (388)
151 PLN00415 3-ketoacyl-CoA syntha 41.5 62 0.0013 35.4 6.4 61 126-188 137-198 (466)
152 PRK06633 acetyl-CoA acetyltran 41.4 22 0.00048 37.8 3.0 28 126-153 30-57 (392)
153 PRK06065 acetyl-CoA acetyltran 41.4 44 0.00096 35.5 5.3 56 125-183 31-89 (392)
154 PF07451 SpoVAD: Stage V sporu 41.2 1.2E+02 0.0026 31.5 8.0 62 125-193 53-119 (329)
155 PF10079 DUF2317: Uncharacteri 40.9 64 0.0014 35.9 6.6 41 144-184 82-131 (542)
156 PRK12880 3-oxoacyl-(acyl carri 40.6 39 0.00085 35.2 4.7 53 128-181 65-118 (353)
157 PRK04011 peptide chain release 40.4 1.9E+02 0.0042 31.0 9.9 141 4-158 67-229 (411)
158 PRK13411 molecular chaperone D 40.4 60 0.0013 36.9 6.4 65 343-412 310-374 (653)
159 PF03464 eRF1_2: eRF1 domain 2 40.3 89 0.0019 27.7 6.4 81 73-158 2-86 (133)
160 PRK12408 glucokinase; Provisio 39.6 65 0.0014 33.3 6.1 99 71-192 14-127 (336)
161 KOG1794 N-Acetylglucosamine ki 39.4 1.4E+02 0.0031 30.8 8.1 70 74-151 4-74 (336)
162 cd05565 PTS_IIB_lactose PTS_II 39.3 27 0.00058 30.0 2.6 31 364-395 5-35 (99)
163 PRK13928 rod shape-determining 39.2 1.5E+02 0.0032 30.4 8.6 77 328-411 241-320 (336)
164 TIGR01930 AcCoA-C-Actrans acet 39.0 42 0.00091 35.4 4.7 29 124-152 22-50 (386)
165 PF04312 DUF460: Protein of un 38.4 2.9E+02 0.0063 25.3 9.2 76 70-179 29-104 (138)
166 PRK06954 acetyl-CoA acetyltran 38.4 41 0.00089 35.7 4.5 28 125-152 33-60 (397)
167 cd00751 thiolase Thiolase are 38.1 34 0.00074 36.0 3.8 30 124-153 23-52 (386)
168 PRK09258 3-oxoacyl-(acyl carri 37.9 45 0.00097 34.0 4.6 58 125-183 63-121 (338)
169 cd02185 AroH Chorismate mutase 37.7 58 0.0013 28.9 4.5 54 126-184 21-77 (117)
170 PRK12408 glucokinase; Provisio 37.4 1.5E+02 0.0032 30.6 8.3 48 360-411 271-330 (336)
171 cd00327 cond_enzymes Condensin 37.3 80 0.0017 30.2 6.0 27 126-152 10-36 (254)
172 cd00828 elong_cond_enzymes "el 37.1 53 0.0011 34.4 5.1 66 125-191 274-341 (407)
173 cd00831 CHS_like Chalcone and 36.9 49 0.0011 34.2 4.7 56 128-184 90-145 (361)
174 TIGR00250 RNAse_H_YqgF RNAse H 36.7 2.6E+02 0.0055 25.0 8.7 86 76-183 1-91 (130)
175 PRK07850 acetyl-CoA acetyltran 36.5 52 0.0011 34.8 4.9 59 125-183 28-87 (387)
176 PLN02287 3-ketoacyl-CoA thiola 36.4 48 0.001 36.0 4.7 29 125-153 73-101 (452)
177 PLN02644 acetyl-CoA C-acetyltr 36.2 52 0.0011 34.8 4.9 29 124-152 26-54 (394)
178 cd06559 Endonuclease_V Endonuc 36.0 1.3E+02 0.0029 29.2 7.2 98 71-182 24-128 (208)
179 TIGR02627 rhamnulo_kin rhamnul 35.8 43 0.00093 36.0 4.2 74 76-155 1-79 (454)
180 PRK07204 3-oxoacyl-(acyl carri 35.7 48 0.001 33.7 4.4 43 126-177 231-273 (329)
181 PRK08131 acetyl-CoA acetyltran 35.3 47 0.001 35.4 4.4 55 125-183 28-87 (401)
182 PRK13929 rod-share determining 35.2 2.1E+02 0.0045 29.5 9.0 77 329-412 245-324 (335)
183 PRK08170 acetyl-CoA acetyltran 34.8 56 0.0012 35.0 4.9 27 125-151 29-55 (426)
184 PLN03168 chalcone synthase; Pr 34.6 68 0.0015 34.0 5.4 26 128-153 106-131 (389)
185 PLN03169 chalcone synthase fam 34.0 48 0.001 35.1 4.1 30 128-157 111-140 (391)
186 PRK00292 glk glucokinase; Prov 33.8 2.4E+02 0.0052 28.5 9.1 95 72-190 1-107 (316)
187 PTZ00009 heat shock 70 kDa pro 33.8 98 0.0021 35.1 6.8 64 344-412 316-379 (653)
188 PRK06519 3-oxoacyl-(acyl carri 33.7 51 0.0011 35.1 4.3 62 125-191 280-341 (398)
189 PRK13301 putative L-aspartate 33.6 2.1E+02 0.0045 29.1 8.3 37 359-395 85-121 (267)
190 PF04493 Endonuclease_5: Endon 33.5 1.3E+02 0.0028 29.3 6.7 96 72-182 21-124 (206)
191 cd05564 PTS_IIB_chitobiose_lic 33.2 42 0.00091 28.3 2.9 31 364-395 4-34 (96)
192 COG4820 EutJ Ethanolamine util 32.3 80 0.0017 31.0 4.9 50 339-396 210-259 (277)
193 PRK06840 hypothetical protein; 32.0 62 0.0013 33.1 4.5 27 126-152 238-264 (339)
194 PRK06157 acetyl-CoA acetyltran 32.0 66 0.0014 34.1 4.8 29 124-152 28-56 (398)
195 TIGR00904 mreB cell shape dete 31.9 2.4E+02 0.0052 28.8 8.8 43 363-411 282-324 (333)
196 cd00826 nondecarbox_cond_enzym 31.8 69 0.0015 33.9 4.9 58 125-183 25-83 (393)
197 PRK09052 acetyl-CoA acetyltran 31.7 69 0.0015 34.1 4.9 28 125-152 33-61 (399)
198 PRK13930 rod shape-determining 31.2 1.9E+02 0.0042 29.3 7.9 43 363-411 283-325 (335)
199 PRK12879 3-oxoacyl-(acyl carri 31.1 77 0.0017 32.0 5.0 28 125-152 225-252 (325)
200 PLN03169 chalcone synthase fam 31.0 90 0.002 33.0 5.6 47 124-177 280-326 (391)
201 PF00195 Chal_sti_synt_N: Chal 30.9 1.2E+02 0.0027 29.9 6.1 62 129-191 106-167 (226)
202 PRK09590 celB cellobiose phosp 30.9 48 0.001 28.6 2.9 30 364-394 6-35 (104)
203 PLN02326 3-oxoacyl-[acyl-carri 30.9 68 0.0015 33.6 4.7 43 126-177 281-323 (379)
204 cd00832 CLF Chain-length facto 30.8 83 0.0018 33.3 5.3 63 125-191 270-335 (399)
205 cd00827 init_cond_enzymes "ini 30.7 69 0.0015 32.1 4.5 28 125-152 50-77 (324)
206 PRK06365 acetyl-CoA acetyltran 30.7 68 0.0015 34.5 4.7 33 125-157 39-71 (430)
207 PRK07204 3-oxoacyl-(acyl carri 30.4 86 0.0019 31.8 5.2 28 126-153 55-82 (329)
208 PLN03172 chalcone synthase fam 30.4 1.4E+02 0.003 31.7 6.9 42 128-171 107-149 (393)
209 PRK11617 endonuclease V; Provi 30.3 72 0.0016 31.5 4.4 96 73-182 30-132 (224)
210 PRK05790 putative acyltransfer 30.2 65 0.0014 33.9 4.4 28 124-151 27-54 (393)
211 PTZ00455 3-ketoacyl-CoA thiola 30.2 81 0.0017 34.1 5.1 30 124-153 49-80 (438)
212 PRK07851 acetyl-CoA acetyltran 30.1 73 0.0016 33.9 4.7 29 124-152 28-57 (406)
213 TIGR00853 pts-lac PTS system, 30.0 49 0.0011 27.9 2.8 31 364-395 8-38 (95)
214 cd00830 KAS_III Ketoacyl-acyl 29.9 87 0.0019 31.4 5.1 28 125-152 52-79 (320)
215 PLN03170 chalcone synthase; Pr 29.5 1E+02 0.0022 32.8 5.7 24 129-152 112-135 (401)
216 PRK05788 cobalamin biosynthesi 29.5 1E+02 0.0023 31.8 5.6 51 125-182 208-258 (315)
217 PRK13927 rod shape-determining 29.2 2.3E+02 0.0051 28.7 8.2 43 363-411 279-321 (334)
218 PRK09258 3-oxoacyl-(acyl carri 29.2 85 0.0018 31.9 5.0 29 124-152 238-266 (338)
219 PRK05963 3-oxoacyl-(acyl carri 29.1 79 0.0017 32.0 4.7 54 127-183 56-111 (326)
220 PF06723 MreB_Mbl: MreB/Mbl pr 29.0 85 0.0019 32.6 4.9 40 362-404 275-315 (326)
221 PRK10310 PTS system galactitol 28.9 62 0.0013 27.2 3.2 32 364-395 7-38 (94)
222 PRK05963 3-oxoacyl-(acyl carri 28.8 93 0.002 31.5 5.1 27 125-151 227-253 (326)
223 cd00829 SCP-x_thiolase Thiolas 28.7 81 0.0018 32.6 4.7 28 125-152 18-45 (375)
224 cd00327 cond_enzymes Condensin 28.5 83 0.0018 30.2 4.5 31 125-156 145-175 (254)
225 TIGR02446 FadI fatty oxidation 28.5 57 0.0012 35.1 3.6 55 125-183 33-91 (430)
226 PRK06840 hypothetical protein; 28.0 85 0.0018 32.1 4.7 32 125-156 55-88 (339)
227 PRK09050 beta-ketoadipyl CoA t 27.9 89 0.0019 33.3 4.9 59 125-183 28-88 (401)
228 PRK04262 hypothetical protein; 27.6 71 0.0015 33.0 4.0 31 125-155 53-84 (347)
229 PRK08947 fadA 3-ketoacyl-CoA t 27.3 82 0.0018 33.3 4.5 58 127-184 31-90 (387)
230 cd00833 PKS polyketide synthas 27.2 77 0.0017 33.1 4.3 32 125-157 279-310 (421)
231 TIGR00748 HMG_CoA_syn_Arc hydr 26.7 79 0.0017 32.7 4.2 28 125-152 52-79 (345)
232 PRK13304 L-aspartate dehydroge 26.6 3.3E+02 0.0071 27.1 8.5 37 359-395 84-120 (265)
233 TIGR01796 CM_mono_aroH monofun 26.5 1.1E+02 0.0024 27.2 4.4 54 126-184 21-77 (117)
234 TIGR02259 benz_CoA_red_A benzo 26.3 1.5E+02 0.0032 32.1 6.0 28 74-101 3-30 (432)
235 PLN03173 chalcone synthase; Pr 26.2 1.3E+02 0.0028 32.0 5.8 23 129-151 108-130 (391)
236 PF08541 ACP_syn_III_C: 3-Oxoa 26.1 63 0.0014 26.2 2.7 18 135-152 1-18 (90)
237 cd00830 KAS_III Ketoacyl-acyl 26.0 82 0.0018 31.5 4.1 28 125-152 223-250 (320)
238 PRK06064 acetyl-CoA acetyltran 26.0 96 0.0021 32.6 4.7 55 125-182 24-82 (389)
239 cd04697 Nudix_Hydrolase_38 Mem 25.1 1.8E+02 0.0039 25.0 5.6 58 85-148 3-66 (126)
240 PRK10949 protease 4; Provision 25.1 2E+02 0.0043 32.7 7.2 64 341-410 350-418 (618)
241 PRK06147 3-oxoacyl-(acyl carri 25.0 1.4E+02 0.003 31.0 5.6 66 125-191 234-301 (348)
242 PF11104 PilM_2: Type IV pilus 24.9 2.4E+02 0.0052 29.0 7.3 54 338-394 250-305 (340)
243 PRK09352 3-oxoacyl-(acyl carri 24.8 1.2E+02 0.0027 30.4 5.1 45 125-178 219-263 (319)
244 PLN03184 chloroplast Hsp70; Pr 24.5 1.1E+03 0.024 27.0 21.0 64 343-412 348-411 (673)
245 PRK06059 lipid-transfer protei 24.4 2.8E+02 0.0061 29.2 8.0 27 125-151 25-51 (399)
246 PF07736 CM_1: Chorismate muta 24.4 1.6E+02 0.0036 26.2 5.1 55 125-184 20-77 (118)
247 KOG2531 Sugar (pentulose and h 24.4 2.3E+02 0.005 31.1 7.0 43 360-409 442-484 (545)
248 PRK07661 acetyl-CoA acetyltran 24.3 1.2E+02 0.0025 32.3 5.0 27 125-151 29-55 (391)
249 PRK12879 3-oxoacyl-(acyl carri 24.2 1.4E+02 0.003 30.1 5.3 31 126-156 56-87 (325)
250 PF00117 GATase: Glutamine ami 24.0 1.2E+02 0.0027 28.0 4.6 40 142-182 40-79 (192)
251 TIGR03676 aRF1/eRF1 peptide ch 23.8 3E+02 0.0065 29.5 8.0 20 4-23 60-79 (403)
252 PLN02367 lactoylglutathione ly 23.8 38 0.00083 33.6 1.1 32 1-32 1-32 (233)
253 PRK13320 pantothenate kinase; 23.7 4.2E+02 0.0091 26.2 8.5 26 72-98 1-26 (244)
254 PF00871 Acetate_kinase: Aceto 23.3 1.6E+02 0.0035 31.3 5.8 51 340-390 299-351 (388)
255 PLN02929 NADH kinase 22.9 2E+02 0.0043 29.7 6.2 52 124-183 32-95 (301)
256 TIGR00747 fabH 3-oxoacyl-(acyl 22.8 1.2E+02 0.0025 30.6 4.5 44 125-177 219-262 (318)
257 COG0332 FabH 3-oxoacyl-[acyl-c 22.5 76 0.0016 33.0 3.1 29 128-156 57-86 (323)
258 KOG3147 6-phosphogluconolacton 22.4 1.6E+02 0.0034 29.6 5.0 54 339-398 24-81 (252)
259 cd04690 Nudix_Hydrolase_31 Mem 22.3 2.4E+02 0.0053 23.5 5.8 58 86-149 4-63 (118)
260 PRK09268 acetyl-CoA acetyltran 22.3 1.2E+02 0.0026 32.6 4.7 28 125-152 33-60 (427)
261 PRK12880 3-oxoacyl-(acyl carri 22.1 1.1E+02 0.0025 31.7 4.4 45 125-178 242-286 (353)
262 PTZ00186 heat shock 70 kDa pre 21.9 2.7E+02 0.0058 31.8 7.5 71 117-193 326-397 (657)
263 PRK04885 ppnK inorganic polyph 21.9 1.6E+02 0.0034 29.7 5.2 54 124-183 13-69 (265)
264 TIGR03855 NAD_NadX aspartate d 21.9 3.4E+02 0.0073 26.7 7.4 50 359-418 60-109 (229)
265 PRK07515 3-oxoacyl-(acyl carri 21.8 88 0.0019 32.6 3.5 28 125-152 271-298 (372)
266 PRK08242 acetyl-CoA acetyltran 21.8 1.4E+02 0.0029 32.0 4.9 27 127-153 32-58 (402)
267 PRK13410 molecular chaperone D 21.7 2.4E+02 0.0053 32.2 7.2 62 126-193 310-372 (668)
268 PRK04262 hypothetical protein; 21.7 1.1E+02 0.0024 31.5 4.1 27 125-151 209-235 (347)
269 PLN02326 3-oxoacyl-[acyl-carri 21.7 1.4E+02 0.0031 31.2 5.1 27 125-151 98-124 (379)
270 COG2433 Uncharacterized conser 21.6 4.3E+02 0.0092 30.0 8.6 30 70-100 241-270 (652)
271 TIGR02430 pcaF beta-ketoadipyl 21.6 1.2E+02 0.0026 32.4 4.4 59 125-184 27-88 (400)
272 CHL00197 carA carbamoyl-phosph 21.4 1.5E+02 0.0032 31.7 5.0 44 144-190 233-276 (382)
273 PRK06504 acetyl-CoA acetyltran 21.3 1.1E+02 0.0024 32.4 4.1 57 125-184 28-88 (390)
274 TIGR00566 trpG_papA glutamine 21.3 1.3E+02 0.0028 28.4 4.2 38 144-183 43-80 (188)
275 PRK06289 acetyl-CoA acetyltran 21.2 1.2E+02 0.0027 32.0 4.5 28 125-152 28-55 (403)
276 PRK14691 3-oxoacyl-(acyl carri 21.1 99 0.0021 32.2 3.6 62 126-188 207-269 (342)
277 TIGR01174 ftsA cell division p 21.1 2.9E+02 0.0063 28.7 7.2 65 328-395 282-348 (371)
278 PLN02836 3-oxoacyl-[acyl-carri 21.1 1.4E+02 0.003 32.0 4.9 31 126-157 300-330 (437)
279 PRK09352 3-oxoacyl-(acyl carri 20.9 1.7E+02 0.0038 29.3 5.3 29 124-152 53-81 (319)
280 PRK12578 acetyl-CoA acetyltran 20.9 1.4E+02 0.0031 31.3 4.8 28 125-152 23-50 (385)
281 TIGR03150 fabF beta-ketoacyl-a 20.8 1.7E+02 0.0037 30.5 5.4 29 127-156 277-305 (407)
282 PRK07910 3-oxoacyl-(acyl carri 20.7 1.3E+02 0.0029 32.1 4.6 29 127-156 288-316 (418)
283 cd00825 decarbox_cond_enzymes 20.6 1.4E+02 0.003 29.9 4.5 66 125-191 205-270 (332)
284 TIGR00747 fabH 3-oxoacyl-(acyl 20.4 1.7E+02 0.0038 29.3 5.2 31 125-155 53-84 (318)
285 TIGR00748 HMG_CoA_syn_Arc hydr 20.4 1.7E+02 0.0038 30.2 5.3 29 124-152 207-235 (345)
286 PRK06816 3-oxoacyl-(acyl carri 20.2 1.8E+02 0.0039 30.5 5.4 38 128-170 275-312 (378)
287 PF01548 DEDD_Tnp_IS110: Trans 20.2 1.5E+02 0.0032 26.1 4.1 27 75-101 1-27 (144)
288 PRK13359 beta-ketoadipyl CoA t 20.2 1.4E+02 0.0031 31.7 4.7 59 125-183 28-88 (400)
289 COG1515 Nfi Deoxyinosine 3'end 20.1 2.5E+02 0.0053 27.6 5.8 98 73-184 29-132 (212)
290 COG0505 CarA Carbamoylphosphat 20.0 1.9E+02 0.0041 30.7 5.3 64 144-208 220-289 (368)
No 1
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-93 Score=715.79 Aligned_cols=338 Identities=41% Similarity=0.683 Sum_probs=314.0
Q ss_pred cEEEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEec
Q 039172 73 LIILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVTI 152 (477)
Q Consensus 73 m~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt~ 152 (477)
|+|||||||||+|+|+|++.++ |+++++.+|++.|++|||||||+|+|+|.++++++|+++|+++|++++|||+||+|.
T Consensus 1 m~iLGIEtScDeT~vaIv~~~~-ilan~~~sq~~~h~~~GGVvPe~Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~ 79 (342)
T COG0533 1 MIILGIETSCDETGVAIVDEEK-ILANVVASQIELHARYGGVVPELASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTA 79 (342)
T ss_pred CeEEEEEcccccceeEEEeccC-hhheehhhcccccCCCCCcCccHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEec
Confidence 7899999999999999999655 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhHHHHHHHHHHHhhcCCCEEEeccHHHHHHHHHHhhhhcCCcCceeeeeccceeeeeccCCceEEEEEccCCc
Q 039172 153 GPGLSLCLRVGVQKARKIAGQFNLPIVGVHHMEAHALVARQWLTMTRMQNDFLDLFNNIHIGQKDTSGHNLLVLAHNLGQ 232 (477)
Q Consensus 153 GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~H~~AHa~sa~~~~~~~~~~~P~l~llDgvyvG~~~SGGht~lv~v~~~~~ 232 (477)
|||+.++|+||+++||+||.++++|+++|||+++|++++++ .+.. .+|+++|+ | |||||+++.+++.++
T Consensus 80 gPGL~gaL~VG~~~Ak~LA~a~~kPli~VnH~~gHi~a~~l--~~~~-~~p~v~Ll----V----SGGHTqli~~~~~g~ 148 (342)
T COG0533 80 GPGLGGALLVGATAAKALALALNKPLIPVNHLEGHIEAARL--ETGL-AFPPVALL----V----SGGHTQLIAVRGIGR 148 (342)
T ss_pred CCCchhHHHHHHHHHHHHHHHhCCCEeecchHHHHHHHHHh--ccCC-CCCcEEEE----E----ecCceEEEEEcCCCc
Confidence 99999999999999999999999999999999999999998 3333 89999999 8 999999999999999
Q ss_pred eeEecccccchhhhHHHHHHHHcCCCCCCCChhHHHHhhhcCCCccccccccccCCCCceeecchHHHHHHHHHHhhcCC
Q 039172 233 YTQLGTTIDDAIGEAFDKTAKWLGLDMRRSGGPAVEKLALEGDAESVKFSTPMKQHKDCNFSYAGLKTQVRLAIESKNID 312 (477)
Q Consensus 233 ~~iLg~t~D~S~Ge~fDkvAr~LGl~~~~~gG~~iE~LA~~g~~~~~~fp~p~~~~~~~~fSFSGlktav~~~i~~~~~~ 312 (477)
|++||+|+|||+||+||||||+|||+|| |||+||+||.+|+++.+.||+|+...+++|||||||||++.+.+++...+
T Consensus 149 y~ilGeTlDdA~Gea~DKvAR~lGL~yP--GGp~Ie~lA~~G~~~~~~fP~~~~~~~~~DfSFSGLkTa~~~~~~~~~~~ 226 (342)
T COG0533 149 YEVLGETLDDAAGEAFDKVARLLGLGYP--GGPAIEKLAKKGDPDAFEFPRPMVKGKNLDFSFSGLKTAVLRLLKKLKQK 226 (342)
T ss_pred EEEEeeechhhhhHHHHHHHHHhCCCCC--CcHHHHHHHhcCCCCceeCCccccCCCCcceehHhHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999 99999999999998889999998766679999999999999999865421
Q ss_pred CCCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEE
Q 039172 313 SRIPISSTSCQDRKSRANIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLV 392 (477)
Q Consensus 313 ~~~~~~~~~~~~~~~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~ 392 (477)
. +....+++|||+|||++++++|+++++||++ .++.++|+++||||+|++||+++.++|..+|+++|
T Consensus 227 ~--------~~~~~d~~dia~sfQ~av~~~L~~kt~rAl~-----~~~~~~lvi~GGVaaN~~LR~~l~~~~~~~g~~~~ 293 (342)
T COG0533 227 E--------ELNEEDKEDIAASFQEAVFDMLVEKTERALK-----HTGKKELVIAGGVAANSRLREMLEEMCKERGAEVY 293 (342)
T ss_pred c--------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-----HhCCCEEEEeccHHHhHHHHHHHHHHHHhcCCEEE
Confidence 1 1123458899999999999999999999998 78899999999999999999999999998999999
Q ss_pred cCCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccccccCCCCcccc
Q 039172 393 CPPPSLCTDNGVMVAWTGIEHFCVGRFDPPPPADDPEDFMYDLRPRWPLGEEF 445 (477)
Q Consensus 393 ~Pp~~~ctDNGamIa~ag~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 445 (477)
+||+.+|||||+||||+|+++|++|... +.+++.++|||++++..
T Consensus 294 ~p~~~lCtDNaaMIA~ag~~~~~~g~~~--------~~~~~~~~~r~~~~~~~ 338 (342)
T COG0533 294 IPPLELCTDNAAMIAYAGLLRYKAGRFI--------SPLDVNVRPRWRLDEVD 338 (342)
T ss_pred cCChHhccchHHHHHHHHHHHHHcCCCC--------CCcccccCCCCchhhcc
Confidence 9999999999999999999999999753 25678999999999864
No 2
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=100.00 E-value=2.8e-84 Score=660.69 Aligned_cols=335 Identities=27% Similarity=0.443 Sum_probs=296.5
Q ss_pred cEEEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcC-CccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEe
Q 039172 73 LIILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYG-GVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVT 151 (477)
Q Consensus 73 m~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~g-Gv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt 151 (477)
|+|||||||||+||+||+++++++++++..+|. .+|| ||+|+.+.+.|.++|+++++++|+++|++++|||+||||
T Consensus 1 ~~iLgIETScd~tsvAl~~~~~~il~~~~~sq~---~~~G~GvvP~~a~r~H~~~l~~~i~~~l~~a~~~~~did~Iavt 77 (345)
T PTZ00340 1 FLALGIEGSANKLGVGIVTSDGEILSNVRETYI---TPPGTGFLPRETAQHHREHILSLVKEALEEAKITPSDISLICYT 77 (345)
T ss_pred CeEEEEEccchhhEEEEEECCCcEEEEEEeecc---ccCCCCcCchHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEe
Confidence 789999999999999999977789999988875 7899 999999999999999999999999999999999999999
Q ss_pred cCCCcchhhHHHHHHHHHHHhhcCCCEEEeccHHHHHHHHHHhhhhcCCcCceeeeeccceeeeeccCCceEEEEEccCC
Q 039172 152 IGPGLSLCLRVGVQKARKIAGQFNLPIVGVHHMEAHALVARQWLTMTRMQNDFLDLFNNIHIGQKDTSGHNLLVLAHNLG 231 (477)
Q Consensus 152 ~GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~H~~AHa~sa~~~~~~~~~~~P~l~llDgvyvG~~~SGGht~lv~v~~~~ 231 (477)
.|||+|+|||||+++||+||..+++|+++|||+++|++++++ .++.++| ++++ | |||||+++. .+.+
T Consensus 78 ~GPGl~~~LrVG~~~Ak~LA~a~~~PligV~HlegHi~a~~l---~~~~~~P-l~Ll----V----SGGhT~l~~-~~~~ 144 (345)
T PTZ00340 78 KGPGMGAPLSVGAVVARTLSLLWGKPLVGVNHCVAHIEMGRL---VTGAENP-VVLY----V----SGGNTQVIA-YSEH 144 (345)
T ss_pred cCCCcHhhHHHHHHHHHHHHHHcCCCEeecchHHHHHHHHhh---ccCCCCC-eEEE----E----eCCceEEEE-ecCC
Confidence 999999999999999999999999999999999999999998 3566789 7777 7 999999998 7789
Q ss_pred ceeEecccccchhhhHHHHHHHHcCCC-CCCCChhHHHHhhhcCCCccccccccccCCCCceeecchHHHHHHHHHHhhc
Q 039172 232 QYTQLGTTIDDAIGEAFDKTAKWLGLD-MRRSGGPAVEKLALEGDAESVKFSTPMKQHKDCNFSYAGLKTQVRLAIESKN 310 (477)
Q Consensus 232 ~~~iLg~t~D~S~Ge~fDkvAr~LGl~-~~~~gG~~iE~LA~~g~~~~~~fp~p~~~~~~~~fSFSGlktav~~~i~~~~ 310 (477)
+|++||+|+|||+||+||||||+|||+ || +|||.||+||..|+ ..++||+|+ +++||||||+||++++++++..
T Consensus 145 ~~~ilG~T~Dda~Gea~DKvar~LGL~~yp-~gGp~iE~lA~~g~-~~~~~P~~~---~~~dfSFSGlkTav~~~i~~~~ 219 (345)
T PTZ00340 145 RYRIFGETIDIAVGNCLDRFARLLNLSNDP-APGYNIEQLAKKGK-NLIELPYVV---KGMDMSFSGILTYIEDLVEHPQ 219 (345)
T ss_pred eEEEEEeecccchhHHHHHHHHHhCCCCCC-CChHHHHHHHhhCC-CccCCCCCC---CCCcEECccHHHHHHHHHHhcc
Confidence 999999999999999999999999999 54 48999999999885 468888886 4699999999999999887531
Q ss_pred CCCCCCCCCCc-ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCC
Q 039172 311 IDSRIPISSTS-CQDRKSRANIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSL 389 (477)
Q Consensus 311 ~~~~~~~~~~~-~~~~~~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~ 389 (477)
.....+ +.. +.....++|||+|||++++++|++++++|++ .+++++|+++||||+|++||++|++.++++++
T Consensus 220 ~~~~~~--~~~~~~~~~~~~diaasfq~~v~~~L~~k~~~a~~-----~~~~~~lvv~GGVAaN~~LR~~l~~~~~~~~~ 292 (345)
T PTZ00340 220 FKDVVS--EIVPPEEEFFTDDLCFSLQETIFAMLVEVTERAMS-----HCGSNEVLIVGGVGCNLRLQEMMQQMAKERGG 292 (345)
T ss_pred cccccc--ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-----HhCCCeEEEcCCHHHHHHHHHHHHHHHHHcCC
Confidence 100000 000 0012236899999999999999999999998 56789999999999999999999999999999
Q ss_pred EEEcCCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCCcc-cccccCCCCccc
Q 039172 390 QLVCPPPSLCTDNGVMVAWTGIEHFCVGRFDPPPPADDPEDFM-YDLRPRWPLGEE 444 (477)
Q Consensus 390 ~l~~Pp~~~ctDNGamIa~ag~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~l~~~ 444 (477)
++|+||+.+|||||+||||+|+++|++|.++ +++ +.+.|+|||++.
T Consensus 293 ~~~~p~~~~ctDNaaMIa~~g~~~~~~g~~~---------~~~~~~~~~~~~l~~~ 339 (345)
T PTZ00340 293 KLFAMDERYCIDNGAMIAYAGLLEYLSGGFT---------PLKDATVTQRFRTDEV 339 (345)
T ss_pred EEEeCChHhhhhhHHHHHHHHHHHHHcCCCC---------ChhhcccccCCcccee
Confidence 9999999999999999999999999998753 444 778999999765
No 3
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-84 Score=641.46 Aligned_cols=367 Identities=43% Similarity=0.650 Sum_probs=335.6
Q ss_pred EEEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEecC
Q 039172 74 IILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVTIG 153 (477)
Q Consensus 74 ~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt~G 153 (477)
+|||||||||||+|||||..++++++++.+|.++|.+||||+|..+...|+++|.+++++||+.+|++++|+|+||||.|
T Consensus 33 ~VLgIETSCDDTavaVVd~~~~~~~~~i~~~t~~~~~yGGI~P~~a~~~Hr~ni~~~iqral~aa~~~p~dldaIAVT~g 112 (405)
T KOG2707|consen 33 KVLGIETSCDDTAVAVVDEFSHVLSSEIYSRTEIHRQYGGIIPTVAQLLHRENIPRLIQRALDAAGLSPKDLDAIAVTRG 112 (405)
T ss_pred eeeeEecccCcceeeeecccccccchhhhhhhHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHcCCCcccceeEEEecC
Confidence 49999999999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhHHHHHHHHHHHhhcCCCEEEeccHHHHHHHHHHhhhhcCCcCceeeeeccceeeeeccCCceEEEEEccCCce
Q 039172 154 PGLSLCLRVGVQKARKIAGQFNLPIVGVHHMEAHALVARQWLTMTRMQNDFLDLFNNIHIGQKDTSGHNLLVLAHNLGQY 233 (477)
Q Consensus 154 PG~~t~LrvG~~~Ak~La~~~~~Pli~V~H~~AHa~sa~~~~~~~~~~~P~l~llDgvyvG~~~SGGht~lv~v~~~~~~ 233 (477)
||+..+|+||+++||+||..+++|+++||||+|||+++++ +++.+.|||++++ + |||||+++++++.++|
T Consensus 113 PGl~lsL~vGl~fA~glA~~l~kPlipVHHMeAHAL~~rl--~~~~v~FPFl~lL----v----SGGH~llvla~~~~~~ 182 (405)
T KOG2707|consen 113 PGLPLSLKVGLSFAKGLAVKLQKPLIPVHHMEAHALSIRL--VDDSVRFPFLALL----V----SGGHTLLVLANGVGDH 182 (405)
T ss_pred CCceeehhhhHHHHHHHHHhccCCccchhHHHHhHHHHHh--ccCCcCCceeeEe----e----eCCceEEEEeccccce
Confidence 9999999999999999999999999999999999999999 4557899999999 8 9999999999999999
Q ss_pred eEecccccchhhhHHHHHHHHcCCCCC----CCChhHHHHhhhcCCC-ccccccccccCCCCceeecchHHHHHHHHHHh
Q 039172 234 TQLGTTIDDAIGEAFDKTAKWLGLDMR----RSGGPAVEKLALEGDA-ESVKFSTPMKQHKDCNFSYAGLKTQVRLAIES 308 (477)
Q Consensus 234 ~iLg~t~D~S~Ge~fDkvAr~LGl~~~----~~gG~~iE~LA~~g~~-~~~~fp~p~~~~~~~~fSFSGlktav~~~i~~ 308 (477)
++||+|+|+|+||+|||+||.||+... .+||+++|.+|..++. ..++||.|+...++|+|||+|+|+++.+.|++
T Consensus 183 ~llg~TvDiApGe~lDK~ar~Lgl~~~~e~~~~~g~aie~la~~~s~~~~l~~piPL~~~~~~nFSFsglk~~~~~~i~k 262 (405)
T KOG2707|consen 183 ELLGQTVDIAPGEALDKCARRLGLLGHPEDARSGGKAIEHLANRASADLHLKFPIPLKNVKKCNFSFSGLKTSYRRIIEK 262 (405)
T ss_pred eeeecccccchHHHHHHHHHHhcCCCCccchhhhhhHHHHHHhccCccccccCCCCccccccCCccHHHHHHHHHHHHHH
Confidence 999999999999999999999999643 3689999999998876 46889999998889999999999999999988
Q ss_pred hcCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCC
Q 039172 309 KNIDSRIPISSTSCQDRKSRANIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNS 388 (477)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g 388 (477)
..+++ +......|+||++|+++++||++++.+|++++..+....+.+|+|||||.|.++|.+|......++
T Consensus 263 ~~k~e---------~~~s~~~dfaa~lQ~tv~~Hi~~Kt~~ai~~~~l~~~~~~~lV~SGGVAsN~yir~~le~l~~~~n 333 (405)
T KOG2707|consen 263 LEKNE---------ETLSEIADFAASLQRTVFRHISSKTHRAIKSLLLQPKNVKQLVISGGVASNQYIRGALEKLSAAHN 333 (405)
T ss_pred hhccc---------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEcCCccchHHHHHHHHHHHHhhC
Confidence 75432 123458999999999999999999999999998655667899999999999999999999999999
Q ss_pred CEEEcCCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccccccCCCCcccccccchhhhcccccccCcc
Q 039172 389 LQLVCPPPSLCTDNGVMVAWTGIEHFCVGRFDPPPPADDPEDFMYDLRPRWPLGEEFAEGRSEARSLRKARMHPS 463 (477)
Q Consensus 389 ~~l~~Pp~~~ctDNGamIa~ag~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 463 (477)
...+.||+.+|+|||+||||+|+++|+.|... .++++-..+...|+|+|++.....+.++++.++.+|||.
T Consensus 334 ~t~i~Pp~~lCsDNgiMIaw~Gie~l~~~r~~----~~~~D~~~ir~~p~~~l~~~~~~~~~~ar~i~~~~i~~~ 404 (405)
T KOG2707|consen 334 CTSIKPPPSLCSDNGIMIAWTGIEMLRNGREL----TSIPDIEPIRARPDNGLLEVSGWITTEARKIKTSTIHPT 404 (405)
T ss_pred CccccCChhhcCCcchhhhhHHHHHHhccccC----CCccccchhhccCCCCccchhhhhhchhhceecccccCC
Confidence 99999999999999999999999999998521 112222237788999999999999999999999999985
No 4
>PRK09604 UGMP family protein; Validated
Probab=100.00 E-value=1.3e-72 Score=577.02 Aligned_cols=329 Identities=47% Similarity=0.758 Sum_probs=302.2
Q ss_pred cEEEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEec
Q 039172 73 LIILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVTI 152 (477)
Q Consensus 73 m~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt~ 152 (477)
|+||||||||+++|+||++++++++++...++.+.|++|||++|+.+.++|.++|+++++++|+++|++++|||+|+||.
T Consensus 1 m~iLgIdTS~~~~sval~~~~~~il~~~~~~~~~~~~~~~Gi~P~~a~~~H~~~l~~~i~~~L~~~~~~~~did~iavt~ 80 (332)
T PRK09604 1 MLILGIETSCDETSVAVVDDGRGLLSNVVASQIDLHARYGGVVPELASRAHVENIVPLIEEALKEAGLTLEDIDAIAVTA 80 (332)
T ss_pred CeEEEEEccccceEEEEEECCCcEEEEEEecchhcccccCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEec
Confidence 88999999999999999996558999988888888999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhHHHHHHHHHHHhhcCCCEEEeccHHHHHHHHHHhhhhcCCcCceeeeeccceeeeeccCCceEEEEEccCCc
Q 039172 153 GPGLSLCLRVGVQKARKIAGQFNLPIVGVHHMEAHALVARQWLTMTRMQNDFLDLFNNIHIGQKDTSGHNLLVLAHNLGQ 232 (477)
Q Consensus 153 GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~H~~AHa~sa~~~~~~~~~~~P~l~llDgvyvG~~~SGGht~lv~v~~~~~ 232 (477)
|||+|||||||+++||+|+..+++|+++|+||++|++++++ .+++++|+++++ + |||||+++.+.+.++
T Consensus 81 GPG~~tglrvg~~~Ak~La~~~~ipl~~v~h~~~ha~~a~~---~s~~~~~~lvl~----v----sGG~s~~~~~~~~~~ 149 (332)
T PRK09604 81 GPGLVGALLVGVSFAKALALALNKPLIGVNHLEGHLLAPFL---EEEPEFPFLALL----V----SGGHTQLVLVKGIGD 149 (332)
T ss_pred CCCcHHhHHHHHHHHHHHHHHhCCCEEeecCHHHHHHhhhh---ccCCCCCEEEEE----e----cCCccEEEEEcCCCc
Confidence 99999999999999999999999999999999999999998 467888999888 8 999999999998899
Q ss_pred eeEecccccchhhhHHHHHHHHcCCCCCCCChhHHHHhhhcCCCccccccccccCCCCceeecchHHHHHHHHHHhhcCC
Q 039172 233 YTQLGTTIDDAIGEAFDKTAKWLGLDMRRSGGPAVEKLALEGDAESVKFSTPMKQHKDCNFSYAGLKTQVRLAIESKNID 312 (477)
Q Consensus 233 ~~iLg~t~D~S~Ge~fDkvAr~LGl~~~~~gG~~iE~LA~~g~~~~~~fp~p~~~~~~~~fSFSGlktav~~~i~~~~~~ 312 (477)
++++++|.|+|+|++|||++++||+.++ +|+++|+||++|++..+++|.++ ..++++|||+|++|++.++++..
T Consensus 150 ~~~l~~t~d~slG~~yd~~t~~LG~~~~--~g~kvmgLA~~g~~~~~~~~~~~-~~~~~~~sfsg~~~~~~~~~~~~--- 223 (332)
T PRK09604 150 YELLGETLDDAAGEAFDKVAKLLGLGYP--GGPAIDKLAKQGDPDAFKFPRPM-DRPGLDFSFSGLKTAVLNTIEKS--- 223 (332)
T ss_pred EEEccccCCchhhHHHHHHHHHcCCCCC--CcHHHHHHHHhCCCCeEeCCccc-cCCCccEecCcHHHHHHHHHHhc---
Confidence 9999999999999999999999999987 88999999999998667777777 33579999999999988766541
Q ss_pred CCCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEE
Q 039172 313 SRIPISSTSCQDRKSRANIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLV 392 (477)
Q Consensus 313 ~~~~~~~~~~~~~~~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~ 392 (477)
.....|||++||++++++++++++++++ .+++++||++||||+|++|+++|.+.++++|+++|
T Consensus 224 ------------~~~~~~iA~s~q~~l~~~l~~~~~~~~~-----~~~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~ 286 (332)
T PRK09604 224 ------------EQTKADIAASFQAAVVDVLVIKTKRALK-----QTGVKTLVVAGGVAANSGLRERLAELAKKRGIEVF 286 (332)
T ss_pred ------------CCCHHHHHHHHHHHHHHHHHHHHHHHHH-----HhCCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEE
Confidence 1237899999999999999999999887 67899999999999999999999999999999999
Q ss_pred cCCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccccccCCCCccc
Q 039172 393 CPPPSLCTDNGVMVAWTGIEHFCVGRFDPPPPADDPEDFMYDLRPRWPLGEE 444 (477)
Q Consensus 393 ~Pp~~~ctDNGamIa~ag~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~ 444 (477)
+||..+|||||+||||+|+++|++|... +++..+++|||+++.
T Consensus 287 ~~~~~p~~D~gisIg~ag~~~~~~g~~~---------~~~~~~~~~~~~~~~ 329 (332)
T PRK09604 287 IPPLKLCTDNAAMIAAAGYERLKAGEFS---------DLDLNARPRWPLDEL 329 (332)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcCCCC---------CCccccCCCCCcccc
Confidence 9999999999999999999999999643 445778999999854
No 5
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=100.00 E-value=1.6e-69 Score=548.55 Aligned_cols=305 Identities=39% Similarity=0.662 Sum_probs=276.5
Q ss_pred EEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEecCCC
Q 039172 76 LGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVTIGPG 155 (477)
Q Consensus 76 LgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt~GPG 155 (477)
|||||||++||+||++++++++++...+|.+.|.+||||+|+.+.+.|.++|+++++++|+++|++++|||+||||.|||
T Consensus 1 LaidTs~~~~sval~~~~~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~~~~~~~did~iav~~GPG 80 (305)
T TIGR00329 1 LGIETSCDDTGVAIVDEEGNVLANIKISQIPLHAKYGGVVPEEASRHHAENIPPLLERALIESNVDKSEIDLIAYTQGPG 80 (305)
T ss_pred CEEecCccceEEEEEECCCcEEEEEEecccccccccCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCC
Confidence 79999999999999995478999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHhhcCCCEEEeccHHHHHHHHHHhhhhcCCcCceeeeeccceeeeeccCCceEEEEEccCCceeE
Q 039172 156 LSLCLRVGVQKARKIAGQFNLPIVGVHHMEAHALVARQWLTMTRMQNDFLDLFNNIHIGQKDTSGHNLLVLAHNLGQYTQ 235 (477)
Q Consensus 156 ~~t~LrvG~~~Ak~La~~~~~Pli~V~H~~AHa~sa~~~~~~~~~~~P~l~llDgvyvG~~~SGGht~lv~v~~~~~~~i 235 (477)
+|||||||+++||+|+..+++|+++|+||++|++++++. ...+.+|+++++ + |||||+++.+++.+++++
T Consensus 81 ~~tglrvg~~~Ak~la~~~~~p~~~v~hl~~ha~~a~~~--s~~~~~~~l~l~----v----sGG~t~l~~~~~~~~~~~ 150 (305)
T TIGR00329 81 LGGSLRVGATFARSLALSLDKPLIGVNHLLGHIYAPRLD--TNILQFPFVSLL----V----SGGHTQIIAVKGIGDYEV 150 (305)
T ss_pred chhhHHHHHHHHHHHHHHhCCCEeecccHHHHHHHhhhh--cCCCCCCcEEEE----E----cCCceEEEEEeCCCcEEE
Confidence 999999999999999999999999999999999999982 233468999988 8 999999999998889999
Q ss_pred ecccccchhhhHHHHHHHHcCCCCCCCChhHHHHhhhcCCCccccccccccCCCCceeecchHHHHHHHHHHhhcCCCCC
Q 039172 236 LGTTIDDAIGEAFDKTAKWLGLDMRRSGGPAVEKLALEGDAESVKFSTPMKQHKDCNFSYAGLKTQVRLAIESKNIDSRI 315 (477)
Q Consensus 236 Lg~t~D~S~Ge~fDkvAr~LGl~~~~~gG~~iE~LA~~g~~~~~~fp~p~~~~~~~~fSFSGlktav~~~i~~~~~~~~~ 315 (477)
+++|.|+|+||+|||||++||++|| ||++||++|.++++..++|+.|+.....++|||+|+++++.+.+++..+.
T Consensus 151 l~~t~d~S~GrlfD~va~lLGl~y~--g~~~iE~lA~~~~~~~~~~~~~~~~~~~~~~s~sgl~~~~~~~~~~~~~~--- 225 (305)
T TIGR00329 151 LGETLDDAVGEAFDKVARLLGLGYP--GGPKIEELAKKGDKLPFYFPLPYTVKPMLDFSFSGLKTAALRKIEKLKKN--- 225 (305)
T ss_pred eeeecCchhhHHHHHHHHHcCCCCC--ChHHHHHHHhhCCCccccCCCccccCCCCcEEchHHHHHHHHHHHhcccc---
Confidence 9999999999999999999999987 99999999999887667777776544456899999999988766543110
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCC
Q 039172 316 PISSTSCQDRKSRANIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPP 395 (477)
Q Consensus 316 ~~~~~~~~~~~~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp 395 (477)
.....+.|||++||++++++|+++++++++ ++++++||++||||+|++||++|.+.+++.++++|+||
T Consensus 226 -------~~~~~~~~iAasfq~~l~~~l~~~~~~~~~-----~~g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~ 293 (305)
T TIGR00329 226 -------LNEATKEDIAYSFQETAFDHLIEKTKRALK-----DTGPKELVLVGGVSANKRLREMLETLCQELNVEFYYPP 293 (305)
T ss_pred -------cccccHHHHHHHHHHHHHHHHHHHHHHHHH-----HcCCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEECCC
Confidence 011347899999999999999999999987 67899999999999999999999999988999999999
Q ss_pred CCCCCcHHHHHH
Q 039172 396 PSLCTDNGVMVA 407 (477)
Q Consensus 396 ~~~ctDNGamIa 407 (477)
+.+|||||+|||
T Consensus 294 ~~p~~DnGiMIa 305 (305)
T TIGR00329 294 LEFCSDNGAMIA 305 (305)
T ss_pred CCCCCccHHhcC
Confidence 999999999996
No 6
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=100.00 E-value=8.5e-69 Score=545.07 Aligned_cols=314 Identities=46% Similarity=0.720 Sum_probs=284.0
Q ss_pred EEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEecCC
Q 039172 75 ILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVTIGP 154 (477)
Q Consensus 75 iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt~GP 154 (477)
||+|||||+++|+||++++++++++...++.+.|.+||||+|+.+.+.|+++|+++|+++|++++++++|||+|||+.||
T Consensus 1 iLaIdTs~~~~sval~~~~~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~~~~~~~~id~iav~~GP 80 (314)
T TIGR03723 1 ILGIETSCDETAVAIVDDGKGLLSNIVASQIELHARYGGVVPELASRAHLEAIPPLIEEALAEAGLTLSDIDAIAVTAGP 80 (314)
T ss_pred CEEEECcccceEEEEEECCceEEEEEEeehhhhccCcCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCC
Confidence 69999999999999999544599988888778899999999999999999999999999999999999999999999999
Q ss_pred CcchhhHHHHHHHHHHHhhcCCCEEEeccHHHHHHHHHHhhhhcCCcCceeeeeccceeeeeccCCceEEEEEccCCcee
Q 039172 155 GLSLCLRVGVQKARKIAGQFNLPIVGVHHMEAHALVARQWLTMTRMQNDFLDLFNNIHIGQKDTSGHNLLVLAHNLGQYT 234 (477)
Q Consensus 155 G~~t~LrvG~~~Ak~La~~~~~Pli~V~H~~AHa~sa~~~~~~~~~~~P~l~llDgvyvG~~~SGGht~lv~v~~~~~~~ 234 (477)
|+|||||||+++||+||..+++|+++|+||++|++++++. ..++++|+++++ + +||||+++.+.+.++++
T Consensus 81 Gsftglrig~~~Ak~la~~~~~p~~~v~h~~aha~~a~~~--s~~~~~~~lvL~----v----dgg~s~~~~~~~~~~~~ 150 (314)
T TIGR03723 81 GLIGALLVGVSFAKALALALNKPLIGVNHLEGHLLAPFLE--DKPLEFPFLALL----V----SGGHTQLVLVKGVGDYE 150 (314)
T ss_pred ChHHhHHHHHHHHHHHHHHhCCCEEecccHHHHHHhhhhc--cCCCCCCEEEEE----E----eCCCcEEEEEecCCeEE
Confidence 9999999999999999999999999999999999998882 125678898877 7 99999999999899999
Q ss_pred EecccccchhhhHHHHHHHHcCCCCCCCChhHHHHhhhcCCCccccccccccCCCCceeecchHHHHHHHHHHhhcCCCC
Q 039172 235 QLGTTIDDAIGEAFDKTAKWLGLDMRRSGGPAVEKLALEGDAESVKFSTPMKQHKDCNFSYAGLKTQVRLAIESKNIDSR 314 (477)
Q Consensus 235 iLg~t~D~S~Ge~fDkvAr~LGl~~~~~gG~~iE~LA~~g~~~~~~fp~p~~~~~~~~fSFSGlktav~~~i~~~~~~~~ 314 (477)
++++|.|+|+|++|||++++||++++ +|+++|+||++|++..+++|.++....+++|||+|+++++.++++....+
T Consensus 151 ~l~~t~d~SlG~~yd~vt~~LG~~~~--~g~kvmgLA~~g~~~~~~~~~~~~~~~~~~~sfsg~~~~~~~~~~~~~~~-- 226 (314)
T TIGR03723 151 LLGETLDDAAGEAFDKVARLLGLGYP--GGPAIDKLAKEGDPKAFKFPRPMTGRPGLDFSFSGLKTAVLNLIEKLKQK-- 226 (314)
T ss_pred EeeccCCchhhHHHHHHHHHcCCCCC--CcHHHHHHHhhCCCCEeECChhhccCCCCCEecccHHHHHHHHHHhcccC--
Confidence 99999999999999999999999976 88999999999998767777776544578999999999988877653210
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcC
Q 039172 315 IPISSTSCQDRKSRANIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCP 394 (477)
Q Consensus 315 ~~~~~~~~~~~~~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~P 394 (477)
+ ..+...+||++||++++++|+++++++++ ++++++||++||||+|++|+++|.+.++++++++|+|
T Consensus 227 ------~--~~~~~~~iA~~~q~~l~~~l~~~~~~~~~-----~~~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~ 293 (314)
T TIGR03723 227 ------G--EELDKADIAASFQAAVVDVLVEKTKRALK-----KTGLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIP 293 (314)
T ss_pred ------c--cccCHHHHHHHHHHHHHHHHHHHHHHHHH-----HhCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECC
Confidence 0 11347899999999999999999999887 6789999999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHHHHHH
Q 039172 395 PPSLCTDNGVMVAWTGIEHFC 415 (477)
Q Consensus 395 p~~~ctDNGamIa~ag~~~~~ 415 (477)
|..+|||||+||||+|+++|+
T Consensus 294 ~~~p~~D~Gi~Ig~ag~~~~~ 314 (314)
T TIGR03723 294 PLELCTDNAAMIAAAGYERLK 314 (314)
T ss_pred CCCCCChHHHHHHHHHHHHhC
Confidence 999999999999999999874
No 7
>PRK14878 UGMP family protein; Provisional
Probab=100.00 E-value=1.5e-68 Score=545.29 Aligned_cols=315 Identities=32% Similarity=0.522 Sum_probs=281.2
Q ss_pred EEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEecCCC
Q 039172 76 LGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVTIGPG 155 (477)
Q Consensus 76 LgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt~GPG 155 (477)
|||||||||||+||++ +++++++.+++| |++||||+|+.+.++|.++|+++++++|+++|++++|||+||||.|||
T Consensus 1 l~iets~~~~s~al~~-~~~i~~~~~~~~---~~~~gg~~p~~~~~~h~~~l~~~i~~~l~~a~~~~~did~Iavt~gPG 76 (323)
T PRK14878 1 LGIESTAHTLGVGIVK-EDKVLANVRDTY---VPEKGGIHPREAAQHHAEVAPELLRKALEKAGISIEDIDAVAVSQGPG 76 (323)
T ss_pred CEEecCCcccEEEEEE-CCEEEEEEEEec---ccCcCCcCccHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCC
Confidence 7999999999999998 567998887764 899999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHhhcCCCEEEeccHHHHHHHHHHhhhhcCCcCceeeeeccceeeeeccCCceEEEEEccCCceeE
Q 039172 156 LSLCLRVGVQKARKIAGQFNLPIVGVHHMEAHALVARQWLTMTRMQNDFLDLFNNIHIGQKDTSGHNLLVLAHNLGQYTQ 235 (477)
Q Consensus 156 ~~t~LrvG~~~Ak~La~~~~~Pli~V~H~~AHa~sa~~~~~~~~~~~P~l~llDgvyvG~~~SGGht~lv~v~~~~~~~i 235 (477)
++|+||||+++||+||..+++|+++|+||++|++++++ .+++++| ++++ + |||||+++.++ .++|++
T Consensus 77 ~~~~lrvg~~~Ak~la~~~~~p~~~v~h~~~Ha~sa~~---~s~~~~~-l~l~----v----sGg~t~i~~~~-~~~~~~ 143 (323)
T PRK14878 77 LGPALRVGATAARALALKYNKPLVPVNHCIAHIEIGRL---TTGAKDP-VVLY----V----SGGNTQVLAFR-GGRYRV 143 (323)
T ss_pred cccchHHHHHHHHHHHHHhCCCccccchHHHHHHhhhh---cCCCCCC-EEEE----E----EcCCeEEEEEe-CCeEEE
Confidence 99999999999999999999999999999999999998 4678889 5555 5 99999998887 677999
Q ss_pred ecccccchhhhHHHHHHHHcCCCCCCCChhHHHHhhhcCCCccccccccccCCCCceeecchHHHHHHHHHHhhcCCCCC
Q 039172 236 LGTTIDDAIGEAFDKTAKWLGLDMRRSGGPAVEKLALEGDAESVKFSTPMKQHKDCNFSYAGLKTQVRLAIESKNIDSRI 315 (477)
Q Consensus 236 Lg~t~D~S~Ge~fDkvAr~LGl~~~~~gG~~iE~LA~~g~~~~~~fp~p~~~~~~~~fSFSGlktav~~~i~~~~~~~~~ 315 (477)
+++|.|+|+||+|||||++||++++ ||+.+|++|..+++ .+++|.++. +++|+|+|+++++.+.+++.
T Consensus 144 ~~~t~d~s~Gr~fD~vA~~LGl~~~--G~~~lE~~a~~~~~-~~~~p~~~~---~~~~~fsgl~~~v~~~i~~~------ 211 (323)
T PRK14878 144 FGETLDIAIGNALDTFAREVGLAPP--GGPAIEKCAEKGEK-YIELPYVVK---GQDLSFSGLLTAALRLYKGK------ 211 (323)
T ss_pred eeeecCcchhHHHHHHHHHcCCCCC--ChhHHHHHHhhCCC-cCcCCccCc---CCCCcchHHHHHHHHHHHcC------
Confidence 9999999999999999999999998 89999999987754 345555552 46899999999987766421
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCC
Q 039172 316 PISSTSCQDRKSRANIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPP 395 (477)
Q Consensus 316 ~~~~~~~~~~~~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp 395 (477)
.+..|||++||++++++|++++.++++ .+++++||++||||+|++|++++.+.+++.|+++|+||
T Consensus 212 ----------~~~~diAa~fq~~l~~~l~~~~~~~~~-----~~g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~ 276 (323)
T PRK14878 212 ----------ERLEDVCYSLRETAFAMLVEVTERALA-----HTGKKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVVP 276 (323)
T ss_pred ----------CCHHHHHHHHHHHHHHHHHHHHHHHHH-----HhCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCC
Confidence 235899999999999999999999887 57889999999999999999999999988999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCCcc-cccccCCCCcc
Q 039172 396 PSLCTDNGVMVAWTGIEHFCVGRFDPPPPADDPEDFM-YDLRPRWPLGE 443 (477)
Q Consensus 396 ~~~ctDNGamIa~ag~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~l~~ 443 (477)
..+|||||+||||+|+++++.+... +++ ..+.|+|++++
T Consensus 277 ~~~~~D~GimIA~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~ 316 (323)
T PRK14878 277 PEYAGDNGAMIAYTGLLAYKHGVTI---------PPEESFVRQRWRLDE 316 (323)
T ss_pred CCCCchHHHHHHHHHHHHHHcCCCC---------ChhhccccCCCcccc
Confidence 9999999999999999999887542 232 56789999976
No 8
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=100.00 E-value=2.2e-67 Score=536.56 Aligned_cols=317 Identities=33% Similarity=0.551 Sum_probs=280.6
Q ss_pred EEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEecCCC
Q 039172 76 LGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVTIGPG 155 (477)
Q Consensus 76 LgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt~GPG 155 (477)
|||||||||||+||++++++|+++...+| |++|||++|+.+.+.|.++|++++++||+++|++++|||+||||.|||
T Consensus 1 Lgiets~~~~s~al~~~~~~i~~~~~~~~---~~~~gg~~p~~~~~~H~~~l~~~i~~~l~~~~~~~~did~Iavt~gPg 77 (322)
T TIGR03722 1 LGIEGTAHTFGVGIVDEDGEILANVSDTY---VPEKGGIHPREAAEHHAEVAPKLIKEALEEAGVSLEDIDAVAFSQGPG 77 (322)
T ss_pred CEEeccccceEEEEEECCCeEEEEEEeec---ccCcCCcChhHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCc
Confidence 79999999999999996778998887765 889999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHhhcCCCEEEeccHHHHHHHHHHhhhhcCCcCceeeeeccceeeeeccCCceEEEEEccCCceeE
Q 039172 156 LSLCLRVGVQKARKIAGQFNLPIVGVHHMEAHALVARQWLTMTRMQNDFLDLFNNIHIGQKDTSGHNLLVLAHNLGQYTQ 235 (477)
Q Consensus 156 ~~t~LrvG~~~Ak~La~~~~~Pli~V~H~~AHa~sa~~~~~~~~~~~P~l~llDgvyvG~~~SGGht~lv~v~~~~~~~i 235 (477)
++++||||+++||+|+..+++|+++|+||+||++++++ .+++++| ++++ + |||||+++.++ .+++++
T Consensus 78 ~~~~l~vg~~~ak~la~~~~~p~~~v~h~~aHa~sa~~---~s~~~~~-lvL~----v----sGg~t~l~~~~-~~~~~~ 144 (322)
T TIGR03722 78 LGPCLRVGATAARALALKLNKPLVGVNHCVAHIEIGRL---TTGAKDP-VVLY----V----SGGNTQVIAYR-NGRYRV 144 (322)
T ss_pred hHHhHHHHHHHHHHHHHHhCCCeechhhHHHHHHhhhc---cCCCCCC-eEEE----E----eCCceEEEEEe-CCeEEE
Confidence 99999999999999999999999999999999999998 4678889 5555 6 99999999888 578999
Q ss_pred ecccccchhhhHHHHHHHHcCCCCCCCChhHHHHhhhcCCCccccccccccCCCCceeecchHHHHHHHHHHhhcCCCCC
Q 039172 236 LGTTIDDAIGEAFDKTAKWLGLDMRRSGGPAVEKLALEGDAESVKFSTPMKQHKDCNFSYAGLKTQVRLAIESKNIDSRI 315 (477)
Q Consensus 236 Lg~t~D~S~Ge~fDkvAr~LGl~~~~~gG~~iE~LA~~g~~~~~~fp~p~~~~~~~~fSFSGlktav~~~i~~~~~~~~~ 315 (477)
+++|.|+|+|++||+||++||++++ ||+.+|++|..++. .++||.++ ++++|+|+|+++++.+.+.+.
T Consensus 145 l~~t~d~s~GrlfDava~~LGl~~~--G~~~le~la~~~~~-~~~~~~~~---~~~~~~fs~l~~~~~~~~~~~------ 212 (322)
T TIGR03722 145 FGETLDIGLGNALDKFAREVGLGHP--GGPKIEELAEKGKE-YIELPYTV---KGMDLSFSGLLTAALRAYKKG------ 212 (322)
T ss_pred EEEeccccchHHHHHHHHHhCCCCC--ChHHHHHHHhcCCC-cccCCccC---CCCcCchHHHHHHHHHHHHcC------
Confidence 9999999999999999999999987 88899999987743 34454444 235689999999887766431
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCC
Q 039172 316 PISSTSCQDRKSRANIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPP 395 (477)
Q Consensus 316 ~~~~~~~~~~~~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp 395 (477)
..+.|||++||++++++|++++.++++ .+++++||++||||+|++||++|.+.+++.|+++|+||
T Consensus 213 ----------~~~~diAasfq~~l~~~l~~~a~~~~~-----~~g~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~ 277 (322)
T TIGR03722 213 ----------ARLEDVCYSLQETAFAMLVEVTERALA-----HTGKKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPP 277 (322)
T ss_pred ----------CCHHHHHHHHHHHHHHHHHHHHHHHHH-----HhCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCC
Confidence 126899999999999999999999887 57889999999999999999999999988999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCCc-ccccccCCCCccc
Q 039172 396 PSLCTDNGVMVAWTGIEHFCVGRFDPPPPADDPEDF-MYDLRPRWPLGEE 444 (477)
Q Consensus 396 ~~~ctDNGamIa~ag~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~l~~~ 444 (477)
..+|||||+||||+|+++++.|... ++ +..+.|+|++++.
T Consensus 278 ~~p~~D~Gi~Ig~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~~ 318 (322)
T TIGR03722 278 PEYAGDNGAMIAYTGLLMYKHGVTI---------PVEESRVRQRWRTDEV 318 (322)
T ss_pred CCCCchHHHHHHHHHHHHHHcCCCC---------ChhhccccCCCccccc
Confidence 9999999999999999998777532 22 2557899999763
No 9
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=100.00 E-value=7.6e-67 Score=565.14 Aligned_cols=303 Identities=34% Similarity=0.597 Sum_probs=275.9
Q ss_pred cEEEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEec
Q 039172 73 LIILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVTI 152 (477)
Q Consensus 73 m~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt~ 152 (477)
|+|||||||||+|||||++++|+++++...+ +|++||||+|+.+.++|.++|+++|+++|+++|++++|||+||||.
T Consensus 1 m~il~iets~~~~s~a~~~~~~~~~~~~~~~---~~~~~gg~~p~~~~~~H~~~l~~~i~~~l~~~~~~~~~id~iav~~ 77 (535)
T PRK09605 1 MIVLGIEGTAWKTSAGIVDSDGDVLFNESDP---YKPPSGGIHPREAAEHHAEAIPKVIKEALEEAGLKPEDIDLVAFSQ 77 (535)
T ss_pred CEEEEEEccccceEEEEEeCCCcEEEEEEee---ccCCcCCCChHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEEECC
Confidence 8899999999999999999667899988754 7899999999999999999999999999999999999999999999
Q ss_pred CCCcchhhHHHHHHHHHHHhhcCCCEEEeccHHHHHHHHHHhhhhcCCcCceeeeeccceeeeeccCCceEEEEEccCCc
Q 039172 153 GPGLSLCLRVGVQKARKIAGQFNLPIVGVHHMEAHALVARQWLTMTRMQNDFLDLFNNIHIGQKDTSGHNLLVLAHNLGQ 232 (477)
Q Consensus 153 GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~H~~AHa~sa~~~~~~~~~~~P~l~llDgvyvG~~~SGGht~lv~v~~~~~ 232 (477)
|||+++|||||+++||+||..+++|+++|+||+||++++++ .+++++| ++++ + |||||+++.+++ ++
T Consensus 78 gPg~~~~l~vg~~~ak~la~~~~~~~~~v~h~~aH~~~a~~---~~~~~~~-l~l~----v----sGg~t~~~~~~~-~~ 144 (535)
T PRK09605 78 GPGLGPCLRVVATAARALALSLDVPLIGVNHCVAHVEIGRL---TTGAEDP-VTLY----V----SGGNTQVLAYLN-GR 144 (535)
T ss_pred CCCcHhhHHHHHHHHHHHHHHhCCCeecccHHHHHHHHhhh---ccCCCCC-eEEE----E----ecCCeEEEEEcC-Ce
Confidence 99999999999999999999999999999999999999998 4678889 6666 6 999999999987 89
Q ss_pred eeEecccccchhhhHHHHHHHHcCCCCCCCChhHHHHhhhcCCCccccccccccCCCCceeecchHHHHHHHHHHhhcCC
Q 039172 233 YTQLGTTIDDAIGEAFDKTAKWLGLDMRRSGGPAVEKLALEGDAESVKFSTPMKQHKDCNFSYAGLKTQVRLAIESKNID 312 (477)
Q Consensus 233 ~~iLg~t~D~S~Ge~fDkvAr~LGl~~~~~gG~~iE~LA~~g~~~~~~fp~p~~~~~~~~fSFSGlktav~~~i~~~~~~ 312 (477)
|+++++|.|+|+|++|||||++||++++ ||+++|++|.+|++ .++||.++ ++++|||+|+++++.+.+++.
T Consensus 145 ~~~l~~t~d~S~G~~fD~va~~Lg~~~~--g~~~le~lA~~~~~-~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~--- 215 (535)
T PRK09605 145 YRVFGETLDIGVGNALDKFARHVGLPHP--GGPKIEKLAKDGKK-YIDLPYVV---KGMDFSFSGLLTAAKRAYDAG--- 215 (535)
T ss_pred EEEEEeecchhhhHHHHHHHHHhCCCCC--CCHHHHHHHhcCCC-cccCCCcC---CCCCEeehHHHHHHHHHHHcC---
Confidence 9999999999999999999999999987 89999999998875 34555443 346799999999887766421
Q ss_pred CCCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEE
Q 039172 313 SRIPISSTSCQDRKSRANIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLV 392 (477)
Q Consensus 313 ~~~~~~~~~~~~~~~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~ 392 (477)
.+..+||++||+++++++++++.++++ ++++++||++||||+|++||++|.+.+++.++++|
T Consensus 216 -------------~~~~~iA~~~q~~l~~~l~~~~~~~~~-----~~g~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~ 277 (535)
T PRK09605 216 -------------EPLEDVCYSLQETAFAMLTEVTERALA-----HTGKDEVLLVGGVAANNRLREMLKEMCEERGADFY 277 (535)
T ss_pred -------------CCHHHHHHHHHHHHHHHHHHHHHHHHH-----HhCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEE
Confidence 125899999999999999999999887 67899999999999999999999999988899999
Q ss_pred cCCCCCCCcHHHHHHHHHHHHHHcCC
Q 039172 393 CPPPSLCTDNGVMVAWTGIEHFCVGR 418 (477)
Q Consensus 393 ~Pp~~~ctDNGamIa~ag~~~~~~g~ 418 (477)
+||..+|||||+||||+++..+..|.
T Consensus 278 ~~~~~~~~D~g~~ia~a~~~~~~~g~ 303 (535)
T PRK09605 278 VPEPRFCGDNGAMIAWLGLLMYKAGD 303 (535)
T ss_pred CCCCccccchHHHHHHHHHHHHHcCC
Confidence 99999999999999999999887664
No 10
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=100.00 E-value=5.6e-61 Score=477.90 Aligned_cols=268 Identities=50% Similarity=0.830 Sum_probs=229.7
Q ss_pred eEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEecCCCcchhhHHHHHHHHHHHhhc
Q 039172 95 EILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVTIGPGLSLCLRVGVQKARKIAGQF 174 (477)
Q Consensus 95 ~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt~GPG~~t~LrvG~~~Ak~La~~~ 174 (477)
+|+++++.+|.++|.+||||+|++|.+.|+++|+++|+++|++++++++|||+||||.|||+|||||||+++||+||..+
T Consensus 1 ~vl~~~~~sq~~~~~~~gGv~P~~a~r~H~~~L~~~i~~~l~~~~~~~~did~iavt~GPGsftgLrvG~~~Ak~La~~~ 80 (268)
T PF00814_consen 1 KVLSNVIASQIEIHAQYGGVVPEIASRQHSENLPPLIEELLKEAGISLSDIDAIAVTRGPGSFTGLRVGLSFAKGLALAL 80 (268)
T ss_dssp -EEEEEEEE--E---TTSSSSHCCHHHHHHHHHHHHHHHHHHHHTS-GGGESEEEEEEESS-HHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEeeccccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcccccHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEeccHHHHHHHHHHhhhhcCCcCceeeeeccceeeeeccCCceEEEEEccCCceeEecccccchhhhHHHHHHHH
Q 039172 175 NLPIVGVHHMEAHALVARQWLTMTRMQNDFLDLFNNIHIGQKDTSGHNLLVLAHNLGQYTQLGTTIDDAIGEAFDKTAKW 254 (477)
Q Consensus 175 ~~Pli~V~H~~AHa~sa~~~~~~~~~~~P~l~llDgvyvG~~~SGGht~lv~v~~~~~~~iLg~t~D~S~Ge~fDkvAr~ 254 (477)
++|+++|+|+++|++++++ .++.++| ++++ + +|||++++.+.+ +.|+++|+|+|++.|+.|||++++
T Consensus 81 ~~Pli~v~~l~a~a~~~~~---~~~~~~P-~~~~----i----sa~~~~vy~~~~-~~~~~~~~t~d~~~ge~~dk~~~~ 147 (268)
T PF00814_consen 81 NIPLIGVSHLEAHALSARL---SEGLKFP-LVLL----I----SAGHTEVYLAEG-GDYEILGETLDDAIGEAFDKVARL 147 (268)
T ss_dssp T--EEEEEHHHHHHHHHHH---HHTEESE-EEEE----E----ECSTCEEEEEET-TEEEEECCBSSSCHHHHHHHHHHH
T ss_pred CCCeEeeccHHHHHHhHhh---hccccCc-eEEE----E----ECCCccEEEEEe-eEEEeeccccccccHHHHhhHHHH
Confidence 9999999999999999887 2344789 7776 6 999999999988 899999999999999999999999
Q ss_pred cCCCCCCCChhHHHHhhhcCCCccccccccccCCCCceeecchHHHHHHHHHHhhcCCCCCCCCCCcccccCCHHHHHHH
Q 039172 255 LGLDMRRSGGPAVEKLALEGDAESVKFSTPMKQHKDCNFSYAGLKTQVRLAIESKNIDSRIPISSTSCQDRKSRANIAAS 334 (477)
Q Consensus 255 LGl~~~~~gG~~iE~LA~~g~~~~~~fp~p~~~~~~~~fSFSGlktav~~~i~~~~~~~~~~~~~~~~~~~~~~~dIAas 334 (477)
||++|+ +|+.+|++|..+ ..++||.|+. +++|||+|+++++.+.++ .++||++
T Consensus 148 l~l~~~--~g~~le~la~~~--~~~~~p~~~~---~~~~sFsG~~t~~~~~i~--------------------~~~iA~s 200 (268)
T PF00814_consen 148 LGLPYP--GGPALEKLASEG--EAFKFPRPLK---NCDFSFSGLKTAVYRLIE--------------------KADIAAS 200 (268)
T ss_dssp TT--SS--HHHHHHHHHCT---S------SEE---TTEEEEHHHHHHHHHHHH--------------------THHHHHH
T ss_pred hccccc--cCcHHHHHHHhC--Ccceecccee---eeeEEEEcccHHHHHHhh--------------------hhHHHHH
Confidence 999997 999999999988 5688988875 389999999999887763 1799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCCCCCCcHHHHHHH
Q 039172 335 FQRVAVLHLEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGVMVAW 408 (477)
Q Consensus 335 fQ~av~~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~~~ctDNGamIa~ 408 (477)
||++++++|.+++.++++ .++.++|+++||||+|++||+.+.+.+.+ ++++++||+.||+||++||||
T Consensus 201 ~q~~~~~~l~~~~~~a~~-----~~~~~~lv~~GGVaaN~~lr~~l~~~~~~-~~~~~~p~~~y~~Dnaamiaw 268 (268)
T PF00814_consen 201 FQEAIADHLAKKAPRALE-----KPRAKSLVVSGGVAANKYLREGLRKLCSE-GIKLFFPPPRYCTDNAAMIAW 268 (268)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHTCSEEEEESGGGGHHHHHHHHHHHHHH-TSEEE---HHHCSS-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----hhcccccchHHHHHHHHHHHHHHHHHHHc-CCEEEcCCHHHcchhHHHhCc
Confidence 999999999999999988 46789999999999999999999999998 999999999999999999999
No 11
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-53 Score=401.24 Aligned_cols=330 Identities=26% Similarity=0.408 Sum_probs=286.6
Q ss_pred CcEEEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcC-CccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEE
Q 039172 72 DLIILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYG-GVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAV 150 (477)
Q Consensus 72 ~m~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~g-Gv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAv 150 (477)
+|..||+|.|....+|.++. +++++++.+.+ +..+-| |+.|...+++|.+.+.++++++|++++++.+|||.|++
T Consensus 1 ~~ialG~EGSANKlGvGiv~-~~~iLaN~R~T---YitPPG~GFlP~~TA~HHr~~il~Lv~~al~ea~v~~~diD~icy 76 (336)
T KOG2708|consen 1 MMIALGLEGSANKLGVGIVR-DGKILANPRHT---YITPPGEGFLPRDTARHHRAWILGLVKQALEEAGVTSDDIDCICY 76 (336)
T ss_pred CceEEecccccccceeeEEe-cceeecCcccc---ccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHcCCChhhCCEEEE
Confidence 47889999999999999999 78999998765 345556 99999999999999999999999999999999999999
Q ss_pred ecCCCcchhhHHHHHHHHHHHhhcCCCEEEeccHHHHHHHHHHhhhhcCCcCceeeeeccceeeeeccCCceEEEEEccC
Q 039172 151 TIGPGLSLCLRVGVQKARKIAGQFNLPIVGVHHMEAHALVARQWLTMTRMQNDFLDLFNNIHIGQKDTSGHNLLVLAHNL 230 (477)
Q Consensus 151 t~GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~H~~AHa~sa~~~~~~~~~~~P~l~llDgvyvG~~~SGGht~lv~v~~~ 230 (477)
|.|||+-..|.+....|+.|+..|++|+++|||..+|+...+. -.+...|.+.. | |||+|+++. .+.
T Consensus 77 TKGPGmgaPL~~vaivaRtlsllw~kPlv~VNHCigHIEMGR~---iTgA~nPvvLY-----v----SGGNTQvIA-Yse 143 (336)
T KOG2708|consen 77 TKGPGMGAPLSVVAIVARTLSLLWNKPLVGVNHCIGHIEMGRE---ITGAQNPVVLY-----V----SGGNTQVIA-YSE 143 (336)
T ss_pred cCCCCCCCchhhHHHHHHHHHHHhCCCcccchhhhhhhhhcce---eccCCCCEEEE-----E----eCCceEEEE-Ecc
Confidence 9999999999999999999999999999999999999988776 35667888865 4 999997654 567
Q ss_pred CceeEecccccchhhhHHHHHHHHcCCCCCCCChhHHHHhhhcCCCccccccccccCCCCceeecchHHHHHHHHHHhhc
Q 039172 231 GQYTQLGTTIDDAIGEAFDKTAKWLGLDMRRSGGPAVEKLALEGDAESVKFSTPMKQHKDCNFSYAGLKTQVRLAIESKN 310 (477)
Q Consensus 231 ~~~~iLg~t~D~S~Ge~fDkvAr~LGl~~~~~gG~~iE~LA~~g~~~~~~fp~p~~~~~~~~fSFSGlktav~~~i~~~~ 310 (477)
.+|+++|+|+|.++|.++|.+||.|+++...+.|+.||++|+.|+. .+++|.. .+++|.||||+.+.+....++..
T Consensus 144 ~rYrIFGETlDIAvGNClDRFAR~lklsN~PsPGynieq~AK~gk~-~ieLPY~---VKGMDvSfSGiLs~ie~~a~~~~ 219 (336)
T KOG2708|consen 144 KRYRIFGETLDIAVGNCLDRFARVLKLSNDPSPGYNIEQLAKKGKN-YIELPYT---VKGMDVSFSGILSYIEDLAEELL 219 (336)
T ss_pred ceeeeecceehhhhhhhHHHHHHHhcCCCCCCCCcCHHHHHHhccc-eeeccee---eeccccchHHHHHHHHHHHhhhh
Confidence 8999999999999999999999999998765779999999999975 6667554 35799999999988777665543
Q ss_pred CCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCE
Q 039172 311 IDSRIPISSTSCQDRKSRANIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQ 390 (477)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~ 390 (477)
+. ..+..++|+|+|+|++++.+|++.++||+.++ +.+.+++.|||.+|.+|.+++..+|+++|-+
T Consensus 220 ~~----------~~~~t~~DLCySLQEtvFamLVEiTERAMAh~-----~s~evLIVGGVGCN~RLQeMM~~Mc~eRgg~ 284 (336)
T KOG2708|consen 220 KP----------SSEVTKEDLCYSLQETVFAMLVEITERAMAHC-----GSKEVLIVGGVGCNERLQEMMAIMCSERGGK 284 (336)
T ss_pred cc----------cccccHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCCcEEEEecccccHHHHHHHHHHHHhcCCc
Confidence 21 11346899999999999999999999999944 5688999999999999999999999999999
Q ss_pred EEcCCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccccccCCCCcccc
Q 039172 391 LVCPPPSLCTDNGVMVAWTGIEHFCVGRFDPPPPADDPEDFMYDLRPRWPLGEEF 445 (477)
Q Consensus 391 l~~Pp~~~ctDNGamIa~ag~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 445 (477)
+|..+..+|-|||+|||++|+++|+.|...+. ++ ..+..|++-+|..
T Consensus 285 ~faTDeRfCIDNG~MIA~aG~l~~~~G~~~~~------~e--s~vTQr~RTDeV~ 331 (336)
T KOG2708|consen 285 LFATDERFCIDNGVMIAQAGLLMFRSGARTPL------SE--STVTQRYRTDEVE 331 (336)
T ss_pred eEecccceeeeCchHHHHhHHHHHhcCCcccc------cc--ceeeeeeeccceE
Confidence 99999999999999999999999999976432 22 4456677666653
No 12
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=99.97 E-value=1.6e-29 Score=280.49 Aligned_cols=243 Identities=20% Similarity=0.271 Sum_probs=185.3
Q ss_pred HHHHHHHHHHHCCCCCCCcCEEEEecCCCcchhhHHHHHHHHHHHhhcCCCEEEeccHHHHHHHHHHhhhhcCC-cCcee
Q 039172 127 IDPVVQEALHKANLTERDLSAVAVTIGPGLSLCLRVGVQKARKIAGQFNLPIVGVHHMEAHALVARQWLTMTRM-QNDFL 205 (477)
Q Consensus 127 l~~~i~~~L~~agi~~~did~IAvt~GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~H~~AHa~sa~~~~~~~~~-~~P~l 205 (477)
+...++...+-.++ +.+.|+++.+|++++. .+|..+++|++.|+||+||+++++. +++. +.|+|
T Consensus 401 ~~~~~~~~~~l~~~---~p~~i~~D~HP~y~st---------~~a~~~~~~~~~vQHH~AH~~a~ma---e~~l~~~~~l 465 (711)
T TIGR00143 401 FKEALNFFLRIYDF---EPQDIVCDLHPQYNTT---------QYAEELSLPVLRVQHHHAHALAVMA---DAGVLEEAVI 465 (711)
T ss_pred HHHHHHHHHHHHCC---CCCEEEEeCCCCchhH---------HHHHHcCCCeeeeeHHHHHHHHHHH---hcCCCcCCeE
Confidence 33445555554556 5889999999999886 2556679999999999999999987 5666 66999
Q ss_pred eee-ccceeeee----ccCCceEEEEEccC-------------------------------Cc-------eeE-------
Q 039172 206 DLF-NNIHIGQK----DTSGHNLLVLAHNL-------------------------------GQ-------YTQ------- 235 (477)
Q Consensus 206 ~ll-DgvyvG~~----~SGGht~lv~v~~~-------------------------------~~-------~~i------- 235 (477)
.+. || +|+. +|||+..+....+. .+ +..
T Consensus 466 g~~~DG--tGyG~Dg~iWGGE~l~~~~~~~~R~~hl~~~~l~GGd~a~~~p~R~a~~~l~~~~~~~~~~~~~~~~~~~~~ 543 (711)
T TIGR00143 466 GITWDG--VGYGEDGKIWGGECLLIDLGRIERLGRLEEFWLLGGDLATKYPLRILLSILLKHDLNDFLKRYQKYFKQEKE 543 (711)
T ss_pred EEEEeC--CccCCCCCeeeeEEEEEeCCceEEEeccccccCCChhHHHHHHHHHHHHHHHhCcccccchhhhhcCcchHH
Confidence 998 99 7774 79996654432110 00 000
Q ss_pred -----------ecccccchhhhHHHHHHHHcCCCC----CCCChhHHHHhhhcCCCccccccccccCCCCceeecchHHH
Q 039172 236 -----------LGTTIDDAIGEAFDKTAKWLGLDM----RRSGGPAVEKLALEGDAESVKFSTPMKQHKDCNFSYAGLKT 300 (477)
Q Consensus 236 -----------Lg~t~D~S~Ge~fDkvAr~LGl~~----~~~gG~~iE~LA~~g~~~~~~fp~p~~~~~~~~fSFSGlkt 300 (477)
++.+..+|+||+||+||++||++. +++.+..+|.+|..+... +.+|..+. +..++|+++.+
T Consensus 544 ~~~~~~~~~~~~n~~~tSS~GRlFDaVAalLGl~~~~syEGqAa~~LE~lA~~s~~~-v~~~~~i~---~~~id~~~l~~ 619 (711)
T TIGR00143 544 LSVLQQALEKKINAPLTTSTGRLFDAVAAALGLCGERTYEGEAAIALEALALRSDGI-ANYPFEIK---NKVLDLKEFYQ 619 (711)
T ss_pred HHHHHHHHHhCCCCcccCCCCcHHHHHHHHcCCCcccccchhhHHHHHHHHhcCCCc-cccCcccc---CCccCHHHHHH
Confidence 123457999999999999999974 323467899998754432 11222332 22677889988
Q ss_pred HHHHHHHhhcCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHH
Q 039172 301 QVRLAIESKNIDSRIPISSTSCQDRKSRANIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARL 380 (477)
Q Consensus 301 av~~~i~~~~~~~~~~~~~~~~~~~~~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L 380 (477)
++.+.+.+. ....+||++||+++++.|+++++++.+ .++.++|+++||||+|++|+++|
T Consensus 620 ~ii~~l~~g----------------~~~~~IAa~fh~tla~~L~~~a~~~~~-----~~g~~~VvLSGGVfqN~~L~~~L 678 (711)
T TIGR00143 620 RFLEDLLVG----------------EDRSKIAHIAHKFVASGLVEIATAIAV-----PFGIHKIVISGGVFYNRLLLERL 678 (711)
T ss_pred HHHHHHHcC----------------CCHHHHHHHHHHHHHHHHHHHHHHHHH-----HcCCCeEEEeccHHHHHHHHHHH
Confidence 876655432 236899999999999999999998876 67889999999999999999999
Q ss_pred HHHHHcCCCEEEcCCCCCCCcHHHHHHHHHH
Q 039172 381 DRAVKNNSLQLVCPPPSLCTDNGVMVAWTGI 411 (477)
Q Consensus 381 ~~~~~~~g~~l~~Pp~~~ctDNGamIa~ag~ 411 (477)
.+.+++.|+++|+|+..+|+|||+|||++.+
T Consensus 679 ~~~L~~~g~~v~~p~~~p~nDgGislGQa~~ 709 (711)
T TIGR00143 679 AKYLKGLGFQFLFHRHLPPGDGGISLGQAVA 709 (711)
T ss_pred HHHHHhCCCEEEccCCCCCCHHHHHHHHHHH
Confidence 9999889999999999999999999999654
No 13
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.1e-28 Score=256.54 Aligned_cols=307 Identities=24% Similarity=0.244 Sum_probs=212.1
Q ss_pred cEEEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHH-HHHHHHHHHCCCCCCCcCEEEEe
Q 039172 73 LIILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAID-PVVQEALHKANLTERDLSAVAVT 151 (477)
Q Consensus 73 m~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~-~~i~~~L~~agi~~~did~IAvt 151 (477)
|+||||-.+.||.++||++ ||+|++.+.+++ +.+.||...++ ..++.||+.+++.+.|||+|++.
T Consensus 1 m~ILGis~~~HD~aaaLv~-Dg~iVaAv~EER-------------ftR~K~~~~fP~~sv~~~L~~~~~~~~dVD~va~~ 66 (555)
T COG2192 1 MYILGISDGYHDAAAALVR-DGEIVAAVEEER-------------FTRKKHDAGFPEQSVDYCLRLAGIELTDVDAVAVA 66 (555)
T ss_pred CEEEEeccCCCCcceEEEe-CCeEEEEehhhh-------------hchhccccCCchHHHHHHHhhccCCcccccEEEEc
Confidence 7899999988999999999 889999988765 56778887776 58999999999999999999998
Q ss_pred cCCCcchhhHH-----------------HHHHHHHHH-------hhcCCCEEEeccHHHHHHHHHHhhhhcCCcCceeee
Q 039172 152 IGPGLSLCLRV-----------------GVQKARKIA-------GQFNLPIVGVHHMEAHALVARQWLTMTRMQNDFLDL 207 (477)
Q Consensus 152 ~GPG~~t~Lrv-----------------G~~~Ak~La-------~~~~~Pli~V~H~~AHa~sa~~~~~~~~~~~P~l~l 207 (477)
.-|+. ..=|+ +..+.+.++ ..+.+++..+.||++||+++++ .++++...+..
T Consensus 67 ~~~~~-~~~r~~~~yl~~~~~~~~~~~~k~~l~~~~~~l~~~~~~~~~~kv~~~eHH~aHAasAf~---~SpF~~a~vl~ 142 (555)
T COG2192 67 GKPSA-KFRRILAGYLKRKPELFGKLLLKKLLKRLLAELDQFFGKGLPVKVLFVEHHLAHAASAFF---TSPFEEALVLT 142 (555)
T ss_pred CCcHH-HHHHHHHHHhhhccccccchhhHHHHHHHHHHhhhhccccCccceeechHHHHHHHHHhc---CCCcccceEEE
Confidence 76642 11121 222222222 3456789999999999999998 47887755555
Q ss_pred eccceeeeeccCCceEEEEEccCCceeEec-ccccchhhhHHHHHHHHcCCCCCCCChhHHHHhhhcCCCccccccc-c-
Q 039172 208 FNNIHIGQKDTSGHNLLVLAHNLGQYTQLG-TTIDDAIGEAFDKTAKWLGLDMRRSGGPAVEKLALEGDAESVKFST-P- 284 (477)
Q Consensus 208 lDgvyvG~~~SGGht~lv~v~~~~~~~iLg-~t~D~S~Ge~fDkvAr~LGl~~~~~gG~~iE~LA~~g~~~~~~fp~-p- 284 (477)
+|| .| -|.+..+.....++..++- .+..+|+|.+|..++.+||+... +++.++|.||++|+++ |.... .
T Consensus 143 iDg--~G----d~~s~~~~~~~~~~~~~i~~~~~~~SLG~fY~~~T~~lGf~~n-~~EgKvMgLAaYG~p~-y~~~~~d~ 214 (555)
T COG2192 143 IDG--AG----DGLSTSVWHGRNGQLTPIAQSRGIDSLGLFYAAFTELLGFKPN-SDEGKVMGLAAYGDPN-YDLSLLDL 214 (555)
T ss_pred Eec--cC----CceEEEEEeccCCeeEEEEeecCcchHHHHHHHHHHHhCCCCC-CCCccEEEeeccCCcc-cchHHHHH
Confidence 688 42 1444445444456666554 56788999999999999999863 5677999999999986 42210 0
Q ss_pred ccCCCCceeec-chHHHHHHHHHHhhc-CC--CCCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 039172 285 MKQHKDCNFSY-AGLKTQVRLAIESKN-ID--SRIPISSTSCQDRKSRANIAASFQRVAVLHLEERCERAIEWALKIEPS 360 (477)
Q Consensus 285 ~~~~~~~~fSF-SGlktav~~~i~~~~-~~--~~~~~~~~~~~~~~~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~ 360 (477)
+.. + .|..| .|. ...+...... .. ...+.........+...|||++.|..+++.+.+......+ .++
T Consensus 215 l~~-~-~~~~~~i~~--~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~diAasaQ~~lE~l~l~~~~~~~~-----~~g 285 (555)
T COG2192 215 LRE-K-EDGLFVING--ELLKRLARLGTFSLLGALKRRLPESPSTERAADIAASAQAYLEELVLEMLRYLRE-----ETG 285 (555)
T ss_pred Hhh-c-cccceeccH--HHHHhccccceeccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH-----HhC
Confidence 111 0 01000 000 0000000000 00 0000000112334568999999999999988887766655 677
Q ss_pred CcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCCCCCCcHHHHHHHHHHHHHHcCC
Q 039172 361 IKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGVMVAWTGIEHFCVGR 418 (477)
Q Consensus 361 ~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~~~ctDNGamIa~ag~~~~~~g~ 418 (477)
..+||++||||+|+.+|.++...- .+.++|+|| ..+|.|.++|+|.+.+.+.+.
T Consensus 286 ~~~L~~AGGVAlNv~~N~~~l~~~--~f~dlfV~P--a~gD~G~AvGAAl~~~~~~~~ 339 (555)
T COG2192 286 EDNLALAGGVALNVKANGKLLRRG--LFEDLFVQP--AMGDAGLAVGAALAVKRELGG 339 (555)
T ss_pred ccceEEccceeeeeeehHhHhhcc--cCceeEecC--CCCCcchHHHHHHHHHHHhcC
Confidence 899999999999999996665432 345899999 489999999998887766654
No 14
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.4e-26 Score=248.74 Aligned_cols=326 Identities=19% Similarity=0.278 Sum_probs=216.6
Q ss_pred cccccccccc-CCCCCCccccc-CCCccCCCCccc--ccccCCCCCcEEEEEecccccceEEEEecCCeEEEEeeehhhh
Q 039172 31 LFVRHNRQII-RPTWSPLRIFS-LPNRHFSSKNFG--QIKMSAKDDLIILGIETSCDDTAAAVVRGNGEILSQVVSSQAD 106 (477)
Q Consensus 31 ~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~m~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~ 106 (477)
.|+-|||+|+ |---|..|..- .+...+.+-++. .++.+......+|++- +--+..++|++ +|+.+-+ |
T Consensus 351 yfL~HNR~I~~r~DDSVVrvV~g~~~~iRrSRGy~P~pi~lp~~~~~~ila~G-aelknTf~l~k-~~~~~lS----Q-- 422 (750)
T COG0068 351 YFLLHNREIVNRCDDSVVRVVAGRIAFIRRSRGYAPKPIELPFNNVKKILALG-AELKNTFCLLK-GGKAYLS----Q-- 422 (750)
T ss_pred eeeecccccccccCCcceeEeCCceeeeehhcCCCCcceecCCCCccceeeec-ccccceEEEEE-CCeEeec----c--
Confidence 4889999999 44445555442 111111111100 1233333445577763 34455678888 4554322 2
Q ss_pred hhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEecCCCcchhhHHHHHHHHHHHhhcCCCEEEeccHHH
Q 039172 107 LLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVTIGPGLSLCLRVGVQKARKIAGQFNLPIVGVHHMEA 186 (477)
Q Consensus 107 ~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt~GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~H~~A 186 (477)
|=|= ...-.-.+.+-.+++..++-.++++ |.|+|+.+|++.|. . +|..++.|++.|+||.|
T Consensus 423 ----~iGd---ls~~~t~~~~~ea~~~~~~~~~~~p---d~i~cDlHP~y~tt-----~----~A~e~~~~~~~VqHH~A 483 (750)
T COG0068 423 ----HIGD---LSNLETLEFFREALRHFLKIYDFEP---DYIVCDLHPNYNTT-----K----YAEEFALPLLQVQHHHA 483 (750)
T ss_pred ----ccCc---chhhhHHHHHHHHHHHHHHHhcCCC---ceEEEecCcccchh-----h----HHHhhcccceeehhhHH
Confidence 1111 1112222344456666666666754 99999999999886 3 55555699999999999
Q ss_pred HHHHHHHhhhhcCC--cCceeeee-ccceeeee----ccCCceEEEEEccC-------------Cc--------------
Q 039172 187 HALVARQWLTMTRM--QNDFLDLF-NNIHIGQK----DTSGHNLLVLAHNL-------------GQ-------------- 232 (477)
Q Consensus 187 Ha~sa~~~~~~~~~--~~P~l~ll-DgvyvG~~----~SGGht~lv~v~~~-------------~~-------------- 232 (477)
|+++++. ++++ ..+++.+. || +|++ .|||+...+.-+.. ++
T Consensus 484 H~~a~ma---e~~~~~~~~vi~ia~DG--~GyG~dGk~WGGE~l~~d~~~~erlahl~~~~L~GGd~Aik~P~R~~ls~l 558 (750)
T COG0068 484 HALAVMA---EHGLPLDEKVIGIALDG--VGYGEDGKVWGGEFLVIDYKEYERLAHLEYVDLPGGDLAIKYPLRMALSIL 558 (750)
T ss_pred HHHHHHh---ccCCCCCCceEEEEecC--ccccccCceecceEEeeccHhhhhhccCcccccCCCchhhhchHHHHHHHH
Confidence 9999987 4554 45899988 99 6664 79997654432210 00
Q ss_pred -------------------eeE--------ecccccchhhhHHHHHHHHcCCC----CCCCChhHHHHhhhcCCCccccc
Q 039172 233 -------------------YTQ--------LGTTIDDAIGEAFDKTAKWLGLD----MRRSGGPAVEKLALEGDAESVKF 281 (477)
Q Consensus 233 -------------------~~i--------Lg~t~D~S~Ge~fDkvAr~LGl~----~~~~gG~~iE~LA~~g~~~~~~f 281 (477)
+++ +..++.+|+||+||++|.+||++ |+++++.++|.+|...+...|++
T Consensus 559 ~~~~~~~~k~~~~~~~e~~~~~l~~~~e~gin~p~tSS~GRlfDAvaalLgi~~~~tYEGE~A~~LEa~a~~~~~~~~~~ 638 (750)
T COG0068 559 LRFFLKLIKNYNEKYGELELKVLAQALEKGINAPLTSSIGRVFDAVAALLGICETRTYEGEAAMALEALADQSDGVDYPY 638 (750)
T ss_pred HHhhhHHHHhhchhhhhhhHHHHHHHHHhccCccccccccHHHHHHHHHhhhhceeeeccchhhhHHHHhhhcccCcccc
Confidence 000 12356799999999999999995 55455678899997743333444
Q ss_pred cccccCCCCceeecchHHHHHHHHHHhhcCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 039172 282 STPMKQHKDCNFSYAGLKTQVRLAIESKNIDSRIPISSTSCQDRKSRANIAASFQRVAVLHLEERCERAIEWALKIEPSI 361 (477)
Q Consensus 282 p~p~~~~~~~~fSFSGlktav~~~i~~~~~~~~~~~~~~~~~~~~~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~ 361 (477)
..+...+.-.|+ +.-+..+++... .....+||..||.++++.+++.+....+ +.|+
T Consensus 639 ~~~~~~~~vld~-----~~~~~~~l~~~~--------------~~~~~~iA~~fh~~la~~~~e~~~~~a~-----~~gi 694 (750)
T COG0068 639 EIKNEDNQVLDL-----KELILGVLEDLL--------------KDEPEKIATKFHNALAEGFAELAVELAK-----KYGI 694 (750)
T ss_pred eeccCCccEeeH-----HHHHHHHHHHhc--------------cCCHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCc
Confidence 333221111333 333444444321 1236899999999999999998877665 7899
Q ss_pred cEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCCCCCCcHHHHHHHHHHH
Q 039172 362 KHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGVMVAWTGIE 412 (477)
Q Consensus 362 ~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~~~ctDNGamIa~ag~~ 412 (477)
++|++||||++|++|.+.+.+.+++.|+++++|...+|+|+|+++|++-+.
T Consensus 695 ~~V~lsGGVf~N~~l~~~~~~~l~~~~f~~~~~~~~P~~DggIslGQ~v~~ 745 (750)
T COG0068 695 NKVVLSGGVFQNRLLLERLAKYLKKEGFRFLFHQEVPAGDGGISLGQAVAA 745 (750)
T ss_pred cEEEeeCCeeecHHHHHHHHHHHHhcCceEeeecccCCCCCceeHHHHHHH
Confidence 999999999999999999999999999999999999999999999998654
No 15
>TIGR03725 bact_YeaZ universal bacterial protein YeaZ. This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.
Probab=99.87 E-value=4.8e-22 Score=190.42 Aligned_cols=100 Identities=38% Similarity=0.580 Sum_probs=93.0
Q ss_pred EEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEecCC
Q 039172 75 ILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVTIGP 154 (477)
Q Consensus 75 iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt~GP 154 (477)
||+||||++.+++|+++ |++++++... ...++|++.|.++|+++|+++|++++|||.|+|+.||
T Consensus 1 iLaidTs~~~~sval~~-~~~~~~~~~~---------------~~~~~h~~~l~~~i~~~l~~~~~~~~~i~~iav~~GP 64 (202)
T TIGR03725 1 ILAIDTSTEALSVALLD-DGEILAERSE---------------EAGRNHSEILLPMIEELLAEAGLSLQDLDAIAVGVGP 64 (202)
T ss_pred CEEEECCCcceEEEEEE-CCEEEEEEee---------------hhhHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCC
Confidence 69999999999999999 6788876532 3578999999999999999999999999999999999
Q ss_pred CcchhhHHHHHHHHHHHhhcCCCEEEeccHHHHHHH
Q 039172 155 GLSLCLRVGVQKARKIAGQFNLPIVGVHHMEAHALV 190 (477)
Q Consensus 155 G~~t~LrvG~~~Ak~La~~~~~Pli~V~H~~AHa~s 190 (477)
|+|||||||+++||+||..+++|+++|+|+++.|..
T Consensus 65 GSfTGlRig~~~akgla~~~~~p~~~vssL~~lA~~ 100 (202)
T TIGR03725 65 GSFTGLRIGLATAKGLALALGIPLVGVSSLEALAAQ 100 (202)
T ss_pred ChHHhHHHHHHHHHHHHHHhCCCEEecCHHHHHHhh
Confidence 999999999999999999999999999999999865
No 16
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=4.9e-21 Score=185.91 Aligned_cols=130 Identities=30% Similarity=0.410 Sum_probs=106.0
Q ss_pred cEEEEEecccccceEEEEec-CCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEe
Q 039172 73 LIILGIETSCDDTAAAVVRG-NGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVT 151 (477)
Q Consensus 73 m~iLgIeTS~ddtsvAlv~~-dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt 151 (477)
|++|+||||...+++||++. +++++.+... ...++|++.|+++++++|+++|++++|+|+|+|+
T Consensus 1 m~iLaiDTs~~~~s~ai~~~~~~~vl~~~~~---------------~~~r~hse~l~~~i~~ll~~~~~~~~dld~iav~ 65 (220)
T COG1214 1 MKILAIDTSTSALSVALYLADDGKVLAEHTE---------------KLKRNHAERLMPMIDELLKEAGLSLQDLDAIAVA 65 (220)
T ss_pred CcEEEEEcChhhhhhheeecCCCcEEEEEEE---------------eccccHHHHHHHHHHHHHHHcCCCHHHCCEEEEc
Confidence 78999999999999999984 4678776653 3578999999999999999999999999999999
Q ss_pred cCCCcchhhHHHHHHHHHHHhhcCCCEEEeccHHHHHHHHHHhhhhcCCcCce-eeee-ccceeeeeccCC
Q 039172 152 IGPGLSLCLRVGVQKARKIAGQFNLPIVGVHHMEAHALVARQWLTMTRMQNDF-LDLF-NNIHIGQKDTSG 220 (477)
Q Consensus 152 ~GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~H~~AHa~sa~~~~~~~~~~~P~-l~ll-DgvyvG~~~SGG 220 (477)
.|||+|||+|||+++||+||..+|+|+++|+++++.+.. .. ......-+. ++.. +.+|.+.|..++
T Consensus 66 ~GPGSFTGlRIG~~~AkgLA~~l~iplvgvssL~~~A~~-~~--~~~~~~v~v~idArr~~vY~~~y~~~~ 133 (220)
T COG1214 66 KGPGSFTGLRIGVAFAKGLALALNIPLVGVSSLEALAQG-GA--EKNAGFVLVAIDARRGEVYWAEYQRSG 133 (220)
T ss_pred cCCCcccchhhHHHHHHHHHHHcCCCEEEeCHHHHHHHh-hh--ccCCCceEEEEeccccceEeEeeecCC
Confidence 999999999999999999999999999999999999877 22 111111122 3344 447777764443
No 17
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=99.73 E-value=3.7e-17 Score=169.54 Aligned_cols=206 Identities=17% Similarity=0.197 Sum_probs=120.5
Q ss_pred HHHHhhhhcCCcCc-eeeeeccceeeeeccC-CceEEEEEccCCceeEe-cccccc---hhhhHHHHHHHHcCCCCCCCC
Q 039172 190 VARQWLTMTRMQND-FLDLFNNIHIGQKDTS-GHNLLVLAHNLGQYTQL-GTTIDD---AIGEAFDKTAKWLGLDMRRSG 263 (477)
Q Consensus 190 sa~~~~~~~~~~~P-~l~llDgvyvG~~~SG-Ght~lv~v~~~~~~~iL-g~t~D~---S~Ge~fDkvAr~LGl~~~~~g 263 (477)
++|+ .++++.. .+.++|| .| +.+..+.....++++.+ ..+.+. |+|.+|..++.+||+... ++
T Consensus 2 Saf~---~S~F~~a~~vlv~DG-------~Gd~~s~~~~~~~~~~~~~~~~~~~~~s~~slG~~Y~~~T~~lGf~~~-~~ 70 (360)
T PF02543_consen 2 SAFY---PSPFDEACAVLVIDG-------GGDGESTSIYHARGGEIERIRESSYPHSGNSLGYFYEAITEYLGFKPN-SD 70 (360)
T ss_dssp HHHT---TTS-SEE-EEEEESS--------SSSEEEEEEEEETTEEEE--EEEEEGG-G-HHHHHHHHHHHTTS-TT---
T ss_pred cccC---cCCCCcCeEEEEEEC-------CCCCcceEEEEecCCEEEEeeeecCCchHHHHHHHHHHHHHhcCCCCC-Cc
Confidence 4565 4677777 6666688 34 22334444445667764 334444 599999999999999763 35
Q ss_pred hhHHHHhhhcCCCccccccccccCCCCceeecchH--HHHHHHHHHhhcCCC-CCCCCCCcccccCCHHHHHHHHHHHHH
Q 039172 264 GPAVEKLALEGDAESVKFSTPMKQHKDCNFSYAGL--KTQVRLAIESKNIDS-RIPISSTSCQDRKSRANIAASFQRVAV 340 (477)
Q Consensus 264 G~~iE~LA~~g~~~~~~fp~p~~~~~~~~fSFSGl--ktav~~~i~~~~~~~-~~~~~~~~~~~~~~~~dIAasfQ~av~ 340 (477)
+.++|+||.+|++... +...+.. .+.+.+.+. ............... ............+...|||+++|..++
T Consensus 71 egKvMGLA~YG~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlAa~~Q~~~E 147 (360)
T PF02543_consen 71 EGKVMGLAAYGKPPDR-FDELLEE--LFSLNFDGDFDFRQKIPFLSTSLLRFIDFFARSPEEPLTQRHADLAASAQKVLE 147 (360)
T ss_dssp HHHHHHHHTTS--S-T-TTTTEEE--ETTEEEETTSHHHHHHHHHSSS----EEEETTTCEEEEESS-HHHHHHHHHHHH
T ss_pred ccceeeeccCCCCchH-HHHHHHH--HhccccCCCeeeeccccccccchhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 6799999999954221 1111111 111222222 111111111100000 000000011224578999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcE-EEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCCCCCCcHHHHHHHHHHHHHHcCC
Q 039172 341 LHLEERCERAIEWALKIEPSIKH-LVVSGGVASNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGVMVAWTGIEHFCVGR 418 (477)
Q Consensus 341 ~~L~~~~~ral~~~~~~~~~~~~-lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~~~ctDNGamIa~ag~~~~~~g~ 418 (477)
+.+++.+.++++ ++++++ ||++||||+|+.+|.+|.+... .-++|+|| .|+|.|++||+|.+..++.+.
T Consensus 148 ~~v~~~~~~~~~-----~~g~~~~L~laGGvaLN~~~N~~l~~~~~--~~~v~V~P--a~gD~G~aiGaA~~~~~~~~~ 217 (360)
T PF02543_consen 148 EIVLHLVRHLLE-----RTGIDNNLCLAGGVALNCKANGRLLEEPG--FDNVFVPP--AAGDAGLAIGAALYAWHELGG 217 (360)
T ss_dssp HHHHHHHHHHHH-----HHT--SEEEEESGGGG-HHHHHHHHTSTT---SEEE--T--TTSGGGHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHH-----HhCCCCeEEEechHHHHHHHHHHHHhcCC--CCeEEECC--CCCCcchHHHHHHHHHHHhcC
Confidence 999999988887 567666 9999999999999999987532 23799999 599999999999888877765
No 18
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=99.67 E-value=2.3e-14 Score=143.83 Aligned_cols=240 Identities=18% Similarity=0.266 Sum_probs=163.6
Q ss_pred CCCcEEEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEE
Q 039172 70 KDDLIILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVA 149 (477)
Q Consensus 70 ~~~m~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IA 149 (477)
.+.|+.+|||..+..+.++|+| +++++...... .|..|. +....+++++|++.|++.+|++.++
T Consensus 29 ~~~m~~~GIDiGStt~K~Vlld-~~~i~~~~~~~--------tg~~~~-------~~a~~~l~~~l~~~g~~~~~v~~~~ 92 (293)
T TIGR03192 29 DAKIITCGIDVGSVSSQAVLVC-DGELYGYNSMR--------TGNNSP-------DSAKNALQGIMDKIGMKLEDINYVV 92 (293)
T ss_pred ccccEEEEEEeCchhEEEEEEe-CCEEEEEEeec--------CCCCHH-------HHHHHHHHHHHHHcCCcccceEEEE
Confidence 3448999999999999999999 56776554321 233332 3345688899999999888999887
Q ss_pred EecCCCcchhhHHHHHHHHHHHhhcCCCEEEeccHHHHHHHHHHhhhhcCCcCceeeeeccceeeeeccCCc-eEEEEEc
Q 039172 150 VTIGPGLSLCLRVGVQKARKIAGQFNLPIVGVHHMEAHALVARQWLTMTRMQNDFLDLFNNIHIGQKDTSGH-NLLVLAH 228 (477)
Q Consensus 150 vt~GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~H~~AHa~sa~~~~~~~~~~~P~l~llDgvyvG~~~SGGh-t~lv~v~ 228 (477)
+| |-| |..+.++. -.|+.+.||+..+.+. .+ |-+..+ + +-||+ +..+.++
T Consensus 93 ~T-GyG-----r~~~~~a~----------~~v~EItaha~Ga~~~---~p---p~v~tI----I---DIGGQDsK~I~~d 143 (293)
T TIGR03192 93 GT-GYG-----RVNVPFAH----------KAITEIACHARGANYM---GG---NAVRTI----L---DMGGQDCKAIHCD 143 (293)
T ss_pred EE-Ccc-----hhhcchhh----------cceeeHHHHHHHHHHh---cC---CCCCEE----E---EeCCCceEEEEEc
Confidence 65 555 22222221 1378999999988761 11 222222 1 13664 6677776
Q ss_pred cCCcee--EecccccchhhhHHHHHHHHcCCCCCCCChhHHHHhhhcCCCccccccccccCCCCceeecchHHHHHHHHH
Q 039172 229 NLGQYT--QLGTTIDDAIGEAFDKTAKWLGLDMRRSGGPAVEKLALEGDAESVKFSTPMKQHKDCNFSYAGLKTQVRLAI 306 (477)
Q Consensus 229 ~~~~~~--iLg~t~D~S~Ge~fDkvAr~LGl~~~~~gG~~iE~LA~~g~~~~~~fp~p~~~~~~~~fSFSGlktav~~~i 306 (477)
+.++.. .+++.+....|+|+|.+|+.||++.+ .+..+|...+.+ |.++. ..|.. |. +|.+..++
T Consensus 144 ~~G~v~dF~MNdkCAAGTGrFLE~~A~~Lgi~le-----el~~~a~~~~~~----p~~Is--s~CtV-FA--eSevi~l~ 209 (293)
T TIGR03192 144 EKGKVTNFLMNDKCAAGTGRGMEVISDLMQIPIA-----DLGPRSFDVETE----PEAVS--SICVV-FA--KSEALGLL 209 (293)
T ss_pred CCCcEeeeeecCcccccccHHHHHHHHHcCCCHH-----HHHHHHHhcCCC----CCCcC--CcceE-ec--cHhHHHHH
Confidence 566544 45778888899999999999999754 455556333222 33443 46874 44 88888887
Q ss_pred HhhcCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHc
Q 039172 307 ESKNIDSRIPISSTSCQDRKSRANIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKN 386 (477)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~ 386 (477)
.+. .+++||++++++++++.++..+.+. .-.+.|+++|||+.|..+++.|++.+
T Consensus 210 ~~G----------------~~~edI~aGl~~sia~rv~~~~~~~--------~i~~~v~~~GGva~N~~l~~al~~~L-- 263 (293)
T TIGR03192 210 KAG----------------YTKNMVIAAYCQAMAERVVSLLERI--------GVEEGFFITGGIAKNPGVVKRIERIL-- 263 (293)
T ss_pred HCC----------------CCHHHHHHHHHHHHHHHHHHHhccc--------CCCCCEEEECcccccHHHHHHHHHHh--
Confidence 653 3489999999999988776654431 11356999999999999999999876
Q ss_pred CCCEEE-cCC
Q 039172 387 NSLQLV-CPP 395 (477)
Q Consensus 387 ~g~~l~-~Pp 395 (477)
+.+++ +|+
T Consensus 264 -g~~v~~~p~ 272 (293)
T TIGR03192 264 -GIKAVDTKI 272 (293)
T ss_pred -CCCceeCCC
Confidence 45666 343
No 19
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=99.64 E-value=6.8e-14 Score=138.71 Aligned_cols=238 Identities=17% Similarity=0.211 Sum_probs=158.9
Q ss_pred EEEEEecccccceEEEEecCCe---EEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEE
Q 039172 74 IILGIETSCDDTAAAVVRGNGE---ILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAV 150 (477)
Q Consensus 74 ~iLgIeTS~ddtsvAlv~~dg~---il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAv 150 (477)
+++|||..+..+.++|++++++ ++..... +..|..|. +....+++++++++|++..|++.|+.
T Consensus 2 ~~~GIDiGStttK~Vlid~~~~~~~~~~~~~~-------~~~~~~~~-------~~~~~~l~~~~~~~g~~~~~i~~i~~ 67 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEVDGDKEECLAKRND-------RIRQRDPF-------KLAEDAYDDLLEEAGLAAADVAYCAT 67 (262)
T ss_pred eEEEEEcCcccEEEEEEecCCCeeEEEEEEEe-------cCCCCCHH-------HHHHHHHHHHHHHcCCChhheEEEEE
Confidence 4799999999999999995443 2222211 11123332 23456888999999998889999887
Q ss_pred ecCCCcchhhHHHHHHHHHHHhhcCCCEEEeccHHHHHHHHHHhhhhcCCcCceeeeeccceeeeeccCCc-eEEEEEcc
Q 039172 151 TIGPGLSLCLRVGVQKARKIAGQFNLPIVGVHHMEAHALVARQWLTMTRMQNDFLDLFNNIHIGQKDTSGH-NLLVLAHN 229 (477)
Q Consensus 151 t~GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~H~~AHa~sa~~~~~~~~~~~P~l~llDgvyvG~~~SGGh-t~lv~v~~ 229 (477)
| |-|-. - .++ +. .+..+.||+..+.+. +|-+..+ + +-||+ +..+.+++
T Consensus 68 T-GYGR~-----~-~~a-------~~---~vtEIt~ha~GA~~~-------~p~~~tI----i---DIGGQD~K~I~~~~ 116 (262)
T TIGR02261 68 T-GEGES-----L-AFH-------TG---HFYSMTTHARGAIYL-------NPEARAV----L---DIGALHGRAIRMDE 116 (262)
T ss_pred E-CCchh-----h-hhh-------cC---CeeEEeHHHHHHHHH-------CCCCCEE----E---EeCCCceEEEEEcC
Confidence 6 54421 1 111 11 245788999988762 3333333 1 14775 66777766
Q ss_pred CCcee--EecccccchhhhHHHHHHHHcCCCCCCCChhHHHHhhhcCCCccccccccccCCCCceeecchHHHHHHHHHH
Q 039172 230 LGQYT--QLGTTIDDAIGEAFDKTAKWLGLDMRRSGGPAVEKLALEGDAESVKFSTPMKQHKDCNFSYAGLKTQVRLAIE 307 (477)
Q Consensus 230 ~~~~~--iLg~t~D~S~Ge~fDkvAr~LGl~~~~~gG~~iE~LA~~g~~~~~~fp~p~~~~~~~~fSFSGlktav~~~i~ 307 (477)
.+... .+++.+....|+|+|.+|+.||++.+ .+..+|.+.+. |.++. ..|.. |. +|.+..++.
T Consensus 117 ~G~v~~f~MNdkCAAGTG~FLe~~A~~L~i~le-----el~~~a~~~~~-----~~~is--s~CtV-Fa--eSevi~~~~ 181 (262)
T TIGR02261 117 RGKVEAYKMTSQCASGSGQFLENIARYLGIAQD-----EIGSLSQQADN-----PEKVS--GICAV-LA--ETDVINMVS 181 (262)
T ss_pred CCcEeeEEecCcccccccHHHHHHHHHhCCCHH-----HHHHHHhcCCC-----CCCcC--CCceE-Ec--hhhHHHHHH
Confidence 66665 45778888899999999999999764 55566655432 33443 46764 44 788887776
Q ss_pred hhcCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcC
Q 039172 308 SKNIDSRIPISSTSCQDRKSRANIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNN 387 (477)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~ 387 (477)
+. .+++||++++.+++++.+...+++. ....++++++||||.|..+++.|++.+...
T Consensus 182 ~G----------------~~~edI~aGl~~sia~r~~~~~~~~-------~~~~~~v~~~GGva~n~~~~~~le~~l~~~ 238 (262)
T TIGR02261 182 RG----------------ISAPNILKGIHESMADRLAKLLKSL-------GALDGTVLCTGGLALDAGLLEALKDAIQEA 238 (262)
T ss_pred CC----------------CCHHHHHHHHHHHHHHHHHHHHhcc-------CCCCCcEEEECcccccHHHHHHHHHHhccC
Confidence 43 3489999999999988776655432 111246999999999999999999987543
Q ss_pred CCEEEcC
Q 039172 388 SLQLVCP 394 (477)
Q Consensus 388 g~~l~~P 394 (477)
...+.++
T Consensus 239 ~~~~~v~ 245 (262)
T TIGR02261 239 KMAVAAE 245 (262)
T ss_pred CcceEec
Confidence 3444443
No 20
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=99.64 E-value=8.5e-14 Score=142.04 Aligned_cols=248 Identities=24% Similarity=0.345 Sum_probs=171.0
Q ss_pred CCCCCcEEEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCE
Q 039172 68 SAKDDLIILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSA 147 (477)
Q Consensus 68 ~~~~~m~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~ 147 (477)
+....|++||||..+..|.++|+++++.|+.....+ +=..|. -...++++|++.+.+..+|+.
T Consensus 130 ~~~~~~~~LGID~GSTtTK~VLm~d~~~I~~~~~~~--------t~g~p~---------~~~~l~~~le~l~~~~~~I~~ 192 (396)
T COG1924 130 REYQGMYTLGIDSGSTTTKAVLMEDGKEILYGFYVS--------TKGRPI---------AEKALKEALEELGEKLEEILG 192 (396)
T ss_pred hhhcCcEEEEEecCCcceeEEEEeCCCeEEEEEEEc--------CCCChh---------HHHHHHHHHHHcccChheeee
Confidence 335679999999999999999999665566655433 111222 135788999999999899999
Q ss_pred EEEecCCCcchhhHHHHHHHHHHHhhcCCCEEEeccHHHHHHHHHHhhhhcCCcCceeeeeccceeeeeccCCc-eEEEE
Q 039172 148 VAVTIGPGLSLCLRVGVQKARKIAGQFNLPIVGVHHMEAHALVARQWLTMTRMQNDFLDLFNNIHIGQKDTSGH-NLLVL 226 (477)
Q Consensus 148 IAvt~GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~H~~AHa~sa~~~~~~~~~~~P~l~llDgvyvG~~~SGGh-t~lv~ 226 (477)
+++| |-|-. .+...++... .++.+.||+..+.+. . |-...+ + +.||. +..+.
T Consensus 193 ~~~T-GYGR~-----------~v~~~~~aD~-~~~Ei~ah~kgA~~f---~----p~~dtI----i---DIGGQD~K~i~ 245 (396)
T COG1924 193 LGVT-GYGRN-----------LVGAALGADK-VVVEISAHAKGARYF---A----PDVDTV----I---DIGGQDSKVIK 245 (396)
T ss_pred eeee-cccHH-----------HhhhhhcCCc-ceeeeehhHHHHHHh---C----CCCcEE----E---EecCcceeEEE
Confidence 9988 44421 1232344443 467788999988872 1 222222 1 13664 56666
Q ss_pred EccCCcee--EecccccchhhhHHHHHHHHcCCCCCCCChhHHHHhhhcCCCccccccccccCCCCceeecchHHHHHHH
Q 039172 227 AHNLGQYT--QLGTTIDDAIGEAFDKTAKWLGLDMRRSGGPAVEKLALEGDAESVKFSTPMKQHKDCNFSYAGLKTQVRL 304 (477)
Q Consensus 227 v~~~~~~~--iLg~t~D~S~Ge~fDkvAr~LGl~~~~~gG~~iE~LA~~g~~~~~~fp~p~~~~~~~~fSFSGlktav~~ 304 (477)
++ +|... .+++-+..+.|++++.+|+.||++.+ .+.++|..+++ | ..-+..|.. |. .+.+..
T Consensus 246 i~-dG~v~df~mN~~CAAGtGrFLE~~A~~Lgv~v~-----E~~~~A~~~~~-----~--v~i~S~CaV-F~--eSevi~ 309 (396)
T COG1924 246 LE-DGKVDDFTMNDKCAAGTGRFLEVIARRLGVDVE-----ELGKLALKATP-----P--VKINSRCAV-FA--ESEVIS 309 (396)
T ss_pred Ee-CCeeeeeEeccccccccchHHHHHHHHhCCCHH-----HHHHHHhcCCC-----C--cccCCeeEE-Ee--hHHHHH
Confidence 66 45444 56888999999999999999999876 77788887765 2 122345753 32 445555
Q ss_pred HHHhhcCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcE-EEEEchhHhhHHHHHHHHHH
Q 039172 305 AIESKNIDSRIPISSTSCQDRKSRANIAASFQRVAVLHLEERCERAIEWALKIEPSIKH-LVVSGGVASNKYVRARLDRA 383 (477)
Q Consensus 305 ~i~~~~~~~~~~~~~~~~~~~~~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~~~-lvlsGGVA~N~~Lr~~L~~~ 383 (477)
.+.+. ...+||++.+.+++++....++.+ ...++. |++.|||+.|..+-+.+.+.
T Consensus 310 ~~~~G----------------~~~EdI~AGl~~Sv~~~v~~~~~~--------~~~i~~~iv~~GGva~n~av~~ale~~ 365 (396)
T COG1924 310 ALAEG----------------ASPEDILAGLAYSVAENVAEKVIK--------RVDIEEPIVLQGGVALNKAVVRALEDL 365 (396)
T ss_pred HHHcC----------------CCHHHHHHHHHHHHHHHHHHHHhh--------ccCCCCCEEEECcchhhHHHHHHHHHH
Confidence 44432 348999999999999888875433 223433 99999999999999999887
Q ss_pred HHcCCCEEEcCCCCCCCcHHH
Q 039172 384 VKNNSLQLVCPPPSLCTDNGV 404 (477)
Q Consensus 384 ~~~~g~~l~~Pp~~~ctDNGa 404 (477)
+ |.++++||. +.=+|+
T Consensus 366 l---g~~V~vP~~--~ql~GA 381 (396)
T COG1924 366 L---GRKVIVPPY--AQLMGA 381 (396)
T ss_pred h---CCeeecCCc--cchhhH
Confidence 5 679999994 554554
No 21
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=99.61 E-value=3.6e-13 Score=140.13 Aligned_cols=243 Identities=22% Similarity=0.304 Sum_probs=168.4
Q ss_pred CCcEEEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEE
Q 039172 71 DDLIILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAV 150 (477)
Q Consensus 71 ~~m~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAv 150 (477)
..++.+|||..+..+.+++++ |++++..... |. ..+.+....+++++|+++|++.+|++.|++
T Consensus 142 ~~g~~lGIDiGSTttK~Vl~d-d~~Ii~~~~~-------------~t---~~~~~~a~~~l~~~l~~~Gl~~~di~~i~~ 204 (404)
T TIGR03286 142 QEGLTLGIDSGSTTTKAVVME-DNEVIGTGWV-------------PT---TKVIESAEEAVERALEEAGVSLEDVEAIGT 204 (404)
T ss_pred cCCEEEEEEcChhheeeEEEc-CCeEEEEEEe-------------ec---ccHHHHHHHHHHHHHHHcCCCccceeEEEe
Confidence 456899999999999999998 6688765432 11 233556677899999999999999999987
Q ss_pred ecCCCcchhhHHHHHHHHHHHhhcCCCEEEeccHHHHHHHHHHhhhhcCCcCceeeeeccceeeeeccCCc-eEEEEEcc
Q 039172 151 TIGPGLSLCLRVGVQKARKIAGQFNLPIVGVHHMEAHALVARQWLTMTRMQNDFLDLFNNIHIGQKDTSGH-NLLVLAHN 229 (477)
Q Consensus 151 t~GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~H~~AHa~sa~~~~~~~~~~~P~l~llDgvyvG~~~SGGh-t~lv~v~~ 229 (477)
| |=|- +.+...++.+.+ ++.+.+|+..+.+. .+ ..|-+..+ + +-||. +..+.++
T Consensus 205 T-GyGR-----------~~i~~~~~ad~i-v~EItaha~GA~~L---~p-~~~~v~TI----I---DIGGQDsK~I~l~- 259 (404)
T TIGR03286 205 T-GYGR-----------FTIGEHFGADLI-QEELTVNSKGAVYL---AD-KQEGPATV----I---DIGGMDNKAISVW- 259 (404)
T ss_pred e-eecH-----------HHHhhhcCCCce-EEEEhhHHHHHHHh---cc-cCCCCcEE----E---EeCCCceEEEEEc-
Confidence 7 4441 122223445544 78889999888762 11 11222222 1 14664 5566553
Q ss_pred CCcee--EecccccchhhhHHHHHHHHcCCCCCCCChhHHHHhhhcCCCccccccccccCCCCceeecchHHHHHHHHHH
Q 039172 230 LGQYT--QLGTTIDDAIGEAFDKTAKWLGLDMRRSGGPAVEKLALEGDAESVKFSTPMKQHKDCNFSYAGLKTQVRLAIE 307 (477)
Q Consensus 230 ~~~~~--iLg~t~D~S~Ge~fDkvAr~LGl~~~~~gG~~iE~LA~~g~~~~~~fp~p~~~~~~~~fSFSGlktav~~~i~ 307 (477)
.+... .+++.+....|+++|..|+.||++.+ .+..+|.+++.+ |.++. ..|.. |. ++.+..++.
T Consensus 260 ~G~v~dF~MNdkCAAGTGrFLE~~A~~Lgi~ie-----El~~lA~~~~~~----pv~Is--S~CtV-Fa--eSevIsll~ 325 (404)
T TIGR03286 260 DGIPDNFTMGGICAGASGRFLEMTAKRLGVDIT-----ELGKLALKGMPE----KVRMN--SYCIV-FG--IQDLVTALA 325 (404)
T ss_pred CCceeeEEEcCcccccCcHHHHHHHHHhCCCHH-----HHHHHHHhCCCC----CCCcc--Ccccc-cc--cHhHHHHHH
Confidence 56555 56788888899999999999999775 666778777532 23443 34653 33 677777665
Q ss_pred hhcCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-cEEEEEchhHhhHHHHHHHHHHHHc
Q 039172 308 SKNIDSRIPISSTSCQDRKSRANIAASFQRVAVLHLEERCERAIEWALKIEPSI-KHLVVSGGVASNKYVRARLDRAVKN 386 (477)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~-~~lvlsGGVA~N~~Lr~~L~~~~~~ 386 (477)
+. .+++||++++++++++.+...+.+ ..++ +.|++.|||+.|..+++.|.+.+
T Consensus 326 ~G----------------~~~eDIaAGl~~SIa~rv~~~l~~--------~~~i~~~VvftGGva~N~gvv~ale~~L-- 379 (404)
T TIGR03286 326 EG----------------ASPEDVAAAACHSVAEQVYEQQLQ--------EIDVREPVILVGGTSLIEGLVKALGDLL-- 379 (404)
T ss_pred CC----------------CCHHHHHHHHHHHHHHHHHHHHhh--------cCCCCCcEEEECChhhhHHHHHHHHHHh--
Confidence 43 348999999999998887764222 2233 55999999999999999999876
Q ss_pred CCCEEEcCCC
Q 039172 387 NSLQLVCPPP 396 (477)
Q Consensus 387 ~g~~l~~Pp~ 396 (477)
|.++++|+.
T Consensus 380 -g~~iivPe~ 388 (404)
T TIGR03286 380 -GIEVVVPEY 388 (404)
T ss_pred -CCcEEECCc
Confidence 578999874
No 22
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=99.55 E-value=1.1e-12 Score=129.37 Aligned_cols=241 Identities=18% Similarity=0.259 Sum_probs=165.7
Q ss_pred EEEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEec-
Q 039172 74 IILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVTI- 152 (477)
Q Consensus 74 ~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt~- 152 (477)
++||||..+..+.+++++ +|++++..... |. .+.+.+...+.+++++.+++.+++..|++|.
T Consensus 1 ~~lGIDiGtts~K~vl~d-~g~il~~~~~~------------~~----~~~~~~~~~l~~~~~~~~~~~~~i~~i~~Tg~ 63 (248)
T TIGR00241 1 ISLGIDSGSTTTKMVLME-DGKVIGYKWLD------------TT----PVIEETARAILEALKEAGIGLEPIDKIVATGY 63 (248)
T ss_pred CEEEEEcChhheEEEEEc-CCEEEEEEEec------------CC----CCHHHHHHHHHHHHHHcCCChhheeEEEEECC
Confidence 378999999999999999 88998876431 11 1344556788899999999889999998873
Q ss_pred CCCcchhhHHHHHHHHHHHhhcCCCEEEeccHHHHHHHHHHhhhhcCCcCceeeeeccceeeeeccCC-ceEEEEEccCC
Q 039172 153 GPGLSLCLRVGVQKARKIAGQFNLPIVGVHHMEAHALVARQWLTMTRMQNDFLDLFNNIHIGQKDTSG-HNLLVLAHNLG 231 (477)
Q Consensus 153 GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~H~~AHa~sa~~~~~~~~~~~P~l~llDgvyvG~~~SGG-ht~lv~v~~~~ 231 (477)
|.+... + .+ + .++.+.+|+..+.+. . |-+..+ +++ || .|.++..+ .+
T Consensus 64 ~~~~v~-------~-------~~-~--~~~ei~~~~~g~~~~---~----~~~~~v--idi-----Ggqd~k~i~~~-~g 111 (248)
T TIGR00241 64 GRHKVG-------F-------AD-K--IVTEISCHGKGANYL---A----PEARGV--IDI-----GGQDSKVIKID-DG 111 (248)
T ss_pred Cccccc-------c-------cC-C--ceEEhhHHHHHHHHH---C----CCCCEE--EEe-----cCCeeEEEEEC-CC
Confidence 222111 1 11 2 478999999988762 2 222222 113 55 56666666 56
Q ss_pred ceeE--ecccccchhhhHHHHHHHHcCCCCCCCChhHHHHhhhcCCCccccccccccCCCCceeecchHHHHHHHHHHhh
Q 039172 232 QYTQ--LGTTIDDAIGEAFDKTAKWLGLDMRRSGGPAVEKLALEGDAESVKFSTPMKQHKDCNFSYAGLKTQVRLAIESK 309 (477)
Q Consensus 232 ~~~i--Lg~t~D~S~Ge~fDkvAr~LGl~~~~~gG~~iE~LA~~g~~~~~~fp~p~~~~~~~~fSFSGlktav~~~i~~~ 309 (477)
+..- +++.+....|++++++|+.||++.+ .++.++..+.. |.++. ..|.. |. ++.+...+.+.
T Consensus 112 ~~~~~~~n~~ca~Gtg~f~e~~a~~l~~~~~-----e~~~~~~~~~~-----~~~~~--~~c~v-f~--~s~vi~~l~~g 176 (248)
T TIGR00241 112 KVDDFTMNDKCAAGTGRFLEVTARRLGVSVE-----ELGSLAEKADR-----KAKIS--SMCTV-FA--ESELISLLAAG 176 (248)
T ss_pred cEeeeeecCcccccccHHHHHHHHHcCCCHH-----HHHHHHhcCCC-----CCCcC--CEeEE-Ee--chhHHHHHHCC
Confidence 6543 4566777889999999999999875 66777766542 33443 35753 33 77777766532
Q ss_pred cCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc-EEEEEchhHhhHHHHHHHHHHHHcCC
Q 039172 310 NIDSRIPISSTSCQDRKSRANIAASFQRVAVLHLEERCERAIEWALKIEPSIK-HLVVSGGVASNKYVRARLDRAVKNNS 388 (477)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~~-~lvlsGGVA~N~~Lr~~L~~~~~~~g 388 (477)
.+++||++++++.++..+...+.+ .+.+ .|+++|||+.|..+++.+.+.+ +
T Consensus 177 ----------------~~~~di~~~~~~~va~~i~~~~~~---------~~~~~~Vvl~GGva~n~~l~~~l~~~l---g 228 (248)
T TIGR00241 177 ----------------VKKEDILAGVYESIAERVAEMLQR---------LKIEAPIVFTGGVSKNKGLVKALEKKL---G 228 (248)
T ss_pred ----------------CCHHHHHHHHHHHHHHHHHHHHhh---------cCCCCCEEEECccccCHHHHHHHHHHh---C
Confidence 247899999999998888764322 2344 7999999999999999999876 6
Q ss_pred CEEEcCCCCCCCcHHHHHHHH
Q 039172 389 LQLVCPPPSLCTDNGVMVAWT 409 (477)
Q Consensus 389 ~~l~~Pp~~~ctDNGamIa~a 409 (477)
.++++|+.. ....++|+|
T Consensus 229 ~~v~~~~~~---~~~~AlGaA 246 (248)
T TIGR00241 229 MKVITPPEP---QIVGAVGAA 246 (248)
T ss_pred CcEEcCCCc---cHHHHHHHH
Confidence 789998742 223455654
No 23
>PRK13317 pantothenate kinase; Provisional
Probab=99.40 E-value=1.7e-10 Score=116.00 Aligned_cols=247 Identities=17% Similarity=0.174 Sum_probs=158.8
Q ss_pred CcEEEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEe
Q 039172 72 DLIILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVT 151 (477)
Q Consensus 72 ~m~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt 151 (477)
+++.+|||-.+..+.+++++++++++.....+ +....+.+.+. ...++..|++|
T Consensus 1 m~~~iGIDiGstt~K~v~~~~~~~~~~~~~~~----------------------~~~~~~~~~l~----~~~~~~~i~~T 54 (277)
T PRK13317 1 MEMKIGIDAGGTLTKIVYLEEKKQRTFKTEYS----------------------AEGKKVIDWLI----NLQDIEKICLT 54 (277)
T ss_pred CCceEEEEeCcccEEEEEEcCCCeEEEEeecc----------------------HHHHHHHHHhh----ccCCceEEEEE
Confidence 35789999999999999999777766543211 11112223332 34678889988
Q ss_pred cCCCcchhhHHHHHHHHHHHhhcCCCEEEeccHHHHHHHHHHhhhh-cCCcCceeeeeccceeeeeccCCceEEEEEccC
Q 039172 152 IGPGLSLCLRVGVQKARKIAGQFNLPIVGVHHMEAHALVARQWLTM-TRMQNDFLDLFNNIHIGQKDTSGHNLLVLAHNL 230 (477)
Q Consensus 152 ~GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~H~~AHa~sa~~~~~~-~~~~~P~l~llDgvyvG~~~SGGht~lv~v~~~ 230 (477)
-|=+. .+++.+ ..++|++.|+.+.||+..+.+...+ .....|++.+. + |.-+.++.+++.
T Consensus 55 G~g~~--------~~~~~~--~~~~~~~~v~E~~a~~~g~~~l~~~~~~~~~~~~i~~----i-----G~g~si~~~~g~ 115 (277)
T PRK13317 55 GGKAG--------YLQQLL--NYGYPIAEFVEFEATGLGVRYLLKEEGHDLNDYIFTN----I-----GTGTSIHYVDGN 115 (277)
T ss_pred Ccchh--------hhhHHH--hcCCCeeeeHHHHHHHHHHHHHHHhcCCCCCcEEEEE----e-----cCceEEEEEeCC
Confidence 54221 112211 3789998899999999988773111 11245776554 2 333556666544
Q ss_pred CceeEecccccchhhhHHHHHHHHc-CCCCCCCChhHHHHhhhcCCCccccccc---------cccCCCCceeecchHHH
Q 039172 231 GQYTQLGTTIDDAIGEAFDKTAKWL-GLDMRRSGGPAVEKLALEGDAESVKFST---------PMKQHKDCNFSYAGLKT 300 (477)
Q Consensus 231 ~~~~iLg~t~D~S~Ge~fDkvAr~L-Gl~~~~~gG~~iE~LA~~g~~~~~~fp~---------p~~~~~~~~fSFSGlkt 300 (477)
.++.++.|.--. | .++-.+++| +..- =-.+-+||.+|+++.+++.. |+.....|. +|. |
T Consensus 116 -~~~r~~Gt~iGG-g-t~~gL~~lL~~~~~----~~el~~la~~g~~~~~Dl~v~dIy~~~~~~l~i~s~cs-vFa--k- 184 (277)
T PRK13317 116 -SQRRVGGTGIGG-G-TIQGLSKLLTNISD----YEQLIELAKHGDRNNIDLKVGDIYKGPLPPIPGDLTAS-NFG--K- 184 (277)
T ss_pred -ceEEEccccccH-H-HHHHHHHHHhCCCC----HHHHHHHHhcCCCccccceeccccCCCCCCCCCceeEe-hhh--h-
Confidence 777777665443 4 899999998 4321 12677799999865443311 111111233 233 2
Q ss_pred HHHHHHHhhcCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEc-hhHhhHHHHHH
Q 039172 301 QVRLAIESKNIDSRIPISSTSCQDRKSRANIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVSG-GVASNKYVRAR 379 (477)
Q Consensus 301 av~~~i~~~~~~~~~~~~~~~~~~~~~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~~~lvlsG-GVA~N~~Lr~~ 379 (477)
+..++.+ ..+++|||++++..+.+.+...+..+.+ ..+.++|+++| ||+.|..+++.
T Consensus 185 -v~~l~~~----------------g~~~eDIaasl~~~v~~~I~~lA~~~ar-----~~~~~~Ivf~G~gla~n~~l~~~ 242 (277)
T PRK13317 185 -VLHHLDS----------------EFTSSDILAGVIGLVGEVITTLSIQAAR-----EKNIENIVYIGSTLTNNPLLQEI 242 (277)
T ss_pred -hhhhhcc----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCCeEEEECcccccCHHHHHH
Confidence 3233221 2348999999999998888877655444 45678999999 79999999999
Q ss_pred HHHHHHcCCCEEEcCCC
Q 039172 380 LDRAVKNNSLQLVCPPP 396 (477)
Q Consensus 380 L~~~~~~~g~~l~~Pp~ 396 (477)
+.+.++..+.++++|+.
T Consensus 243 l~~~l~~~~~~~~~p~~ 259 (277)
T PRK13317 243 IESYTKLRNCTPIFLEN 259 (277)
T ss_pred HHHHHhcCCceEEecCC
Confidence 99988777889999874
No 24
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=99.27 E-value=4.4e-10 Score=116.41 Aligned_cols=175 Identities=18% Similarity=0.254 Sum_probs=124.5
Q ss_pred EeccHHHHHHHHHHhhhhcCCcCceeeeeccceeeeeccCCc-eEEEEEccCCcee--EecccccchhhhHHHHHHHHcC
Q 039172 180 GVHHMEAHALVARQWLTMTRMQNDFLDLFNNIHIGQKDTSGH-NLLVLAHNLGQYT--QLGTTIDDAIGEAFDKTAKWLG 256 (477)
Q Consensus 180 ~V~H~~AHa~sa~~~~~~~~~~~P~l~llDgvyvG~~~SGGh-t~lv~v~~~~~~~--iLg~t~D~S~Ge~fDkvAr~LG 256 (477)
.++.+.||+..+.+. +|-+..+ + +.||+ +..+.+++.++.. .+++.+....|++++.+|+.||
T Consensus 250 vitEItcHA~GA~~l-------~P~vrTI----I---DIGGQDsK~I~ld~~G~V~dF~MNDKCAAGTGrFLE~mA~~Lg 315 (432)
T TIGR02259 250 IRSEILCHGLGAHLM-------YPGTRTV----L---DIGGQDTKGIQIDDHGIVENFQMNDRCAAGCGRYLGYIADEMN 315 (432)
T ss_pred eeeeHHHHHHHHHHH-------CCCCCEE----E---EeCCCceEEEEEcCCCcEeeeeecCcccccchHHHHHHHHHcC
Confidence 358999999998872 2433333 1 14665 6677777667666 5678888899999999999999
Q ss_pred CCCCCCChhHHHHhhhcCCCccccccccccCCCCceeecchHHHHHHHHHHhhcCCCCCCCCCCcccccCCHHHHHHHHH
Q 039172 257 LDMRRSGGPAVEKLALEGDAESVKFSTPMKQHKDCNFSYAGLKTQVRLAIESKNIDSRIPISSTSCQDRKSRANIAASFQ 336 (477)
Q Consensus 257 l~~~~~gG~~iE~LA~~g~~~~~~fp~p~~~~~~~~fSFSGlktav~~~i~~~~~~~~~~~~~~~~~~~~~~~dIAasfQ 336 (477)
++.+ .+..+|.+++. |.++. ..|.. |+ +|.+..++.+. .+++||+++++
T Consensus 316 i~le-----El~~lA~~a~~-----pv~IS--S~CtV-FA--ESEVIslla~G----------------~~reDIaAGL~ 364 (432)
T TIGR02259 316 MGLH-----ELGPLAMKSSK-----PARIN--STCTV-FA--GAELRDRLALG----------------DKREDILAGLH 364 (432)
T ss_pred CCHH-----HHHHHHhcCCC-----CCCcC--CcceE-Ee--hHHHHHHHHCC----------------CCHHHHHHHHH
Confidence 9764 55566665542 33443 46874 44 88888877653 34899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcC--CCEEEcCCCCCCCcHHHHHHHH
Q 039172 337 RVAVLHLEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNN--SLQLVCPPPSLCTDNGVMVAWT 409 (477)
Q Consensus 337 ~av~~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~--g~~l~~Pp~~~ctDNGamIa~a 409 (477)
+++++.....+.+.. .-.+.|+++|||+.|..+++.|++.++.. +.++++|+. +.=+|+ ||+|
T Consensus 365 ~SIA~Rv~s~l~r~~-------~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~--pq~~GA-LGAA 429 (432)
T TIGR02259 365 RAIILRAISIISRSG-------GITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPD--SIYTGA-LGAS 429 (432)
T ss_pred HHHHHHHHHHHhccc-------CCCCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCC--ccHHHH-HHHH
Confidence 999888777655431 12367999999999999999999988532 568999874 333443 5544
No 25
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=98.81 E-value=1.3e-06 Score=87.90 Aligned_cols=257 Identities=14% Similarity=0.103 Sum_probs=160.6
Q ss_pred EEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEecCC
Q 039172 75 ILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVTIGP 154 (477)
Q Consensus 75 iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt~GP 154 (477)
.+|||-....+.++..+.++++++....+ ++.+.+...+++..... +.+..|++|-|=
T Consensus 2 ~iGiDiGgT~~Kiv~~~~~~~~~f~~~~~------------------~~~~~~~~~l~~~~~~~----~~~~~i~~TGgG 59 (279)
T TIGR00555 2 RIGIDIGGTLIKVVYEEPKGRRKFKTFET------------------TNIDKFIEWLKNQIHRH----SRITTLCATGGG 59 (279)
T ss_pred eEEEEeCcceEEEEEEcCCCcEEEEEeec------------------ccHHHHHHHHHHHHHhh----cCceEEEEECCc
Confidence 58999999999999997788888765432 23345555555444332 356778888542
Q ss_pred CcchhhHHHHHHHHHHHhhcCCCEEEeccHHHHHHHHHHhhhh--cCCcCceeeeeccceeeeeccCCceEEEEEccCCc
Q 039172 155 GLSLCLRVGVQKARKIAGQFNLPIVGVHHMEAHALVARQWLTM--TRMQNDFLDLFNNIHIGQKDTSGHNLLVLAHNLGQ 232 (477)
Q Consensus 155 G~~t~LrvG~~~Ak~La~~~~~Pli~V~H~~AHa~sa~~~~~~--~~~~~P~l~llDgvyvG~~~SGGht~lv~v~~~~~ 232 (477)
+ ..++..+...+++++.-+..++|-.....+...+ +...+|++.+= + |--+.++.+++. +
T Consensus 60 a--------~k~~~~~~~~~~v~~~k~dE~~a~~~g~~~ll~~~~~~~~~p~llvn----I-----GsGvSi~~v~~~-~ 121 (279)
T TIGR00555 60 A--------FKFAELIYESAGIQLHKFDEFDALIQGLNYLLKEEPKDDIYPYLLVN----I-----GTGTSILYVDGD-N 121 (279)
T ss_pred H--------HHHHHHhccccCCcccchhHHHHHHHHHHHHhhcccCCCCCceEEEE----e-----cCCeEEEEEcCc-c
Confidence 2 2334444444455555667888887776652111 12457887654 3 323678888876 8
Q ss_pred eeEecccccchhhhHHHHHHHHcCCCCCCCChhHHHHhhhcCCCcccccccc-ccCCCCceeecchHHHH-----HHHHH
Q 039172 233 YTQLGTTIDDAIGEAFDKTAKWLGLDMRRSGGPAVEKLALEGDAESVKFSTP-MKQHKDCNFSYAGLKTQ-----VRLAI 306 (477)
Q Consensus 233 ~~iLg~t~D~S~Ge~fDkvAr~LGl~~~~~gG~~iE~LA~~g~~~~~~fp~p-~~~~~~~~fSFSGlkta-----v~~~i 306 (477)
+++++.|.--. |-++ ..+++|.-.- .=..+-+||..|++...++-.. +.. . +..=.||+.. +-++.
T Consensus 122 ~~Rv~Gt~iGG-GTf~-GL~~LL~~~~---~~~el~~lA~~G~~~~vDl~V~dIYg-~--~y~~~~L~~d~iASsfGkv~ 193 (279)
T TIGR00555 122 YERVGGTSLGG-GTFL-GLGKLLTGIQ---TFDELLEMAQHGDRTNVDLLVGDIYG-G--DYSESGLDGSLTASSFGKVL 193 (279)
T ss_pred EEEEcCccccH-HHHH-HHHHHHcCCC---CHHHHHHHHHcCCCcccccccccccC-C--CCCCCCCCcceeeeccchhh
Confidence 99998876555 6666 7888875211 1126667999998654433110 000 0 0000111110 00011
Q ss_pred HhhcCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEch-hHhhHHHHHHHHHHHH
Q 039172 307 ESKNIDSRIPISSTSCQDRKSRANIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVSGG-VASNKYVRARLDRAVK 385 (477)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~~~lvlsGG-VA~N~~Lr~~L~~~~~ 385 (477)
.+.. .....++|||+|+..++...+...+.-... ..+.++|++.|| +.-|..+++.+.+..+
T Consensus 194 ~~~~------------~~~~~~eDiAaSLl~mV~~nIg~lA~~~a~-----~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~ 256 (279)
T TIGR00555 194 SKHL------------DQSFSPEDIAASLLGLIGNNIGQIAYLCAL-----RYNIDRIVFIGSFLRNNQLLMKVLSYATN 256 (279)
T ss_pred cccc------------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----HcCCCeEEEECCcccCCHHHHHHHHHHHh
Confidence 0000 012458999999999999988877654433 567899999999 8889999999999998
Q ss_pred cCCCEEEcCCC
Q 039172 386 NNSLQLVCPPP 396 (477)
Q Consensus 386 ~~g~~l~~Pp~ 396 (477)
..+.++++|+.
T Consensus 257 ~~~~~~ifp~h 267 (279)
T TIGR00555 257 FWSKKALFLEH 267 (279)
T ss_pred hcCceEEEECC
Confidence 88899999974
No 26
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=98.18 E-value=0.00071 Score=67.38 Aligned_cols=150 Identities=21% Similarity=0.219 Sum_probs=83.4
Q ss_pred EEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccch-hcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEe-cC
Q 039172 76 LGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPK-MAEEAHSLAIDPVVQEALHKANLTERDLSAVAVT-IG 153 (477)
Q Consensus 76 LgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~-~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt-~G 153 (477)
||||.....|.++|++.+|+++..... |+..+. ....+-.++|..++++++++.+++..|++.+++. .|
T Consensus 1 lGIDgGgTkt~~vl~d~~g~il~~~~~---------~~~n~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~~~g~aG 71 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDENGNILGRGKG---------GGANYNSVGFEEAMENIKEAIEEALSQAGLSPDDIAAICIGAAG 71 (271)
T ss_dssp EEEEECSSEEEEEEEETTSEEEEEEEE---------S-TTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCEEEEEEEE
T ss_pred CEEeeChheeeeEEEeCCCCEEEEEEe---------CCCCCCCCCcchhhhHHHHHHHHHHHHcCCCccccceeeeeEee
Confidence 799999999999999999998876643 222221 1122224567789999999999999999988443 12
Q ss_pred CCcchhhHHHHHHHHHHHhhcCCCEEEeccHHHHHHHHHHhhhhcCCcCceeeeeccceeeeeccCCceEEEEEccCCce
Q 039172 154 PGLSLCLRVGVQKARKIAGQFNLPIVGVHHMEAHALVARQWLTMTRMQNDFLDLFNNIHIGQKDTSGHNLLVLAHNLGQY 233 (477)
Q Consensus 154 PG~~t~LrvG~~~Ak~La~~~~~Pli~V~H~~AHa~sa~~~~~~~~~~~P~l~llDgvyvG~~~SGGht~lv~v~~~~~~ 233 (477)
=|...-. -.+.+.+... ++.- .+ .++.. .+ .... .+-++++ +|--+..+..+..++.
T Consensus 72 ~~~~~~~---~~~~~~~~~~---~v~~-~~-Da~~a--l~--~~~~--~~giv~I---------~GTGS~~~~~~~~g~~ 128 (271)
T PF01869_consen 72 YGRAGDE---QEFQEEIVRS---EVIV-VN-DAAIA--LY--GATA--EDGIVVI---------AGTGSIAYGRDRDGRV 128 (271)
T ss_dssp EEETTTT---THHHHHHHHH---EEEE-EE-HHHHH--HH--HHST--SSEEEEE---------ESSSEEEEEEETTSEE
T ss_pred ecCcccc---cchhhcceEE---EEEE-EH-HHHHH--hC--CCCC--CcEEEEE---------cCCCceEEEEEcCCcE
Confidence 1111110 0112222211 4443 33 23321 11 1122 3566554 4533444444446666
Q ss_pred eEecc--cccchhhhHHHHHHHHcCC
Q 039172 234 TQLGT--TIDDAIGEAFDKTAKWLGL 257 (477)
Q Consensus 234 ~iLg~--t~D~S~Ge~fDkvAr~LGl 257 (477)
..+|. .+-.--|..|+-..+.|..
T Consensus 129 ~r~gG~G~~~gD~GSg~~ig~~~L~~ 154 (271)
T PF01869_consen 129 IRFGGWGHCLGDEGSGYWIGRRALRA 154 (271)
T ss_dssp EEEEESCTTTTTTTSHHHHHHHHHHH
T ss_pred EEeCCCCCCcCCCCcHHHHHHHHHhH
Confidence 66653 3444557777776666644
No 27
>PRK03011 butyrate kinase; Provisional
Probab=97.88 E-value=0.0072 Score=63.27 Aligned_cols=106 Identities=22% Similarity=0.258 Sum_probs=67.3
Q ss_pred CcEEEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEe
Q 039172 72 DLIILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVT 151 (477)
Q Consensus 72 ~m~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt 151 (477)
+|+||.|+-.+..|.+|+++++..++...+....+..++|..|. .+.+.=...|.++|++.|+.++++++|+.-
T Consensus 1 ~~~il~inpgststk~a~~~~~~~~~~~~~~h~~~~~~~~~~~~------~q~~~r~~~i~~~l~~~g~~~~~l~av~~R 74 (358)
T PRK03011 1 MMRILVINPGSTSTKIAVFEDEKPIFEETLRHSAEELEKFKTII------DQYEFRKQAILDFLKEHGIDLSELDAVVGR 74 (358)
T ss_pred CCEEEEEcCCCchheEEEEcCCceeeeeccccCHHHHhcCCCcc------chHHHHHHHHHHHHHHcCCChhcceEEEEc
Confidence 47899999999999999999665555444333333335554432 111222357788899999999999999533
Q ss_pred cC-----C-Ccc-----------------hhhHHHHHHHHHHHhhcCCCEEEecc
Q 039172 152 IG-----P-GLS-----------------LCLRVGVQKARKIAGQFNLPIVGVHH 183 (477)
Q Consensus 152 ~G-----P-G~~-----------------t~LrvG~~~Ak~La~~~~~Pli~V~H 183 (477)
-| + |-+ ..=..|...|..++..+++|.+-++.
T Consensus 75 gG~~~~v~gG~~~v~~~~~~~l~~~~~~~~~~nl~~~~a~~~~~~~~~p~~v~D~ 129 (358)
T PRK03011 75 GGLLKPIPGGTYRVNEAMLEDLKNGKYGEHASNLGAIIAYEIAKELGIPAFIVDP 129 (358)
T ss_pred CCCCcccCCCCEEcCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCCEEEECC
Confidence 11 1 211 11123556777788878999766654
No 28
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=97.60 E-value=0.0087 Score=62.72 Aligned_cols=233 Identities=19% Similarity=0.264 Sum_probs=124.4
Q ss_pred hHHHHHHHHHHHCCCCCCCcCEEEEe-----cCCCcchhhHHHHHHHHHHHhhcCC------------------CEEEec
Q 039172 126 AIDPVVQEALHKANLTERDLSAVAVT-----IGPGLSLCLRVGVQKARKIAGQFNL------------------PIVGVH 182 (477)
Q Consensus 126 ~l~~~i~~~L~~agi~~~did~IAvt-----~GPG~~t~LrvG~~~Ak~La~~~~~------------------Pli~V~ 182 (477)
....+++++++++++++++||+|++- .-|.....+.+|-. ..||...++ |++++-
T Consensus 72 ~~a~av~~~~~~~~l~~~~id~IgsHGQTv~H~P~~~~TlQiG~~--~~iA~~tgi~VV~DFR~~D~a~GGqGAPLvp~~ 149 (365)
T PRK09585 72 LFAEAVNALLAEAGLSPEDIDAIGSHGQTVRHRPGEGFTLQIGDG--ALIAELTGITVVADFRRRDVAAGGQGAPLVPAF 149 (365)
T ss_pred HHHHHHHHHHHHcCCCccCccEEEeCCcccccCCCCCCeEEcCCH--HHHHHHHCcCEEecChHHHHhcCCCCCCchHHH
Confidence 45678999999999999999999954 23542334444432 234555555 444433
Q ss_pred cHHHHHHHHHHhhhhcCCcCceeeeeccceeeeeccCCceEEEEEccCCceeEecccccchhhhH-HHHHHHHc-CCCCC
Q 039172 183 HMEAHALVARQWLTMTRMQNDFLDLFNNIHIGQKDTSGHNLLVLAHNLGQYTQLGTTIDDAIGEA-FDKTAKWL-GLDMR 260 (477)
Q Consensus 183 H~~AHa~sa~~~~~~~~~~~P~l~llDgvyvG~~~SGGht~lv~v~~~~~~~iLg~t~D~S~Ge~-fDkvAr~L-Gl~~~ 260 (477)
|.. .+ .+... .- .++ = .||-.-+.++...+. .++ -+|...|.+ .|...+.+ +..|.
T Consensus 150 ~~~------Lf---~~~~~-~~-~~l----N----iGGIaNiT~l~~~~~-~~~--afDtGPgN~liD~~~~~~~~~~~D 207 (365)
T PRK09585 150 HQA------LF---GHPDE-TR-AVL----N----IGGIANITLLPPGGG-PVI--GFDTGPGNALIDAWIQRHGGKPYD 207 (365)
T ss_pred HHH------Hh---cCCCC-ce-EEE----e----cCCceEEEEecCCCC-Cee--EecCChhHHHHHHHHHHHhCCCCC
Confidence 311 11 11111 11 222 1 466444444422111 122 358888876 68888776 44666
Q ss_pred CCChhHHHHhhhcCCCc-----------cccccccccCCCCceeecchHHHHHHHHHHhhcCCCCCCCCCCcccccCCHH
Q 039172 261 RSGGPAVEKLALEGDAE-----------SVKFSTPMKQHKDCNFSYAGLKTQVRLAIESKNIDSRIPISSTSCQDRKSRA 329 (477)
Q Consensus 261 ~~gG~~iE~LA~~g~~~-----------~~~fp~p~~~~~~~~fSFSGlktav~~~i~~~~~~~~~~~~~~~~~~~~~~~ 329 (477)
.+| ++|..|+.+ .|..+.|.+ ...-+|. ...+.+.++... ...+
T Consensus 208 ~~G-----~~A~~G~v~~~lL~~ll~~pff~~~pPKS-tgrE~F~----~~~~~~~l~~~~---------------~s~~ 262 (365)
T PRK09585 208 KDG-----AWAASGKVDEALLARLLAHPYFALPPPKS-TGRELFN----LAWLERQLAGFG---------------LSPE 262 (365)
T ss_pred CCC-----hHHhCCCCCHHHHHHHhcCccccCCCCCc-cChhhcC----HHHHHHHHHhCC---------------CCHH
Confidence 333 245555432 233333432 1223343 122333443210 2368
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCC-CCCCc--HHHHH
Q 039172 330 NIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPP-SLCTD--NGVMV 406 (477)
Q Consensus 330 dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~-~~ctD--NGamI 406 (477)
|+.+.+-+-.++.+.+-+++. . ...+.|+++||=+-|.+|.++|++.+. .+|..... -...| .+.+.
T Consensus 263 D~~aTlt~~TA~sI~~~~~~~----~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~---~~v~~~~~~G~~~da~EA~aF 332 (365)
T PRK09585 263 DVQATLTELTAASIARAVRRL----P---PGPDELLVCGGGARNPTLMERLAALLP---TEVATTDALGIDGDAKEALAF 332 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhc----c---CCCCEEEEECCCcchHHHHHHHHHhcC---CcccCHHHcCCChhHHHHHHH
Confidence 887776666655555544221 1 124579999999999999999998763 22322111 01122 36777
Q ss_pred HHHHHHHHHcCC
Q 039172 407 AWTGIEHFCVGR 418 (477)
Q Consensus 407 a~ag~~~~~~g~ 418 (477)
||.|++.+. |.
T Consensus 333 A~La~~~l~-g~ 343 (365)
T PRK09585 333 AWLAVRTLR-GL 343 (365)
T ss_pred HHHHHHHHc-CC
Confidence 999988875 54
No 29
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=97.31 E-value=0.096 Score=52.86 Aligned_cols=102 Identities=20% Similarity=0.178 Sum_probs=63.0
Q ss_pred cEEEEEecccccceEEEEecCCeEEEEeeeh-hhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEe
Q 039172 73 LIILGIETSCDDTAAAVVRGNGEILSQVVSS-QADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVT 151 (477)
Q Consensus 73 m~iLgIeTS~ddtsvAlv~~dg~il~~~~~s-q~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt 151 (477)
+.+|-|+-.+..|.+|+++++. .++....+ ..+...+|.- .....+.=..++.+.+++.|..++++|+|+--
T Consensus 3 yriltINPGststKlaVfe~ek-~ife~tlrhs~eEl~~f~~------i~dQ~~fR~~~i~~~i~e~g~~i~~~dAvvgR 75 (358)
T COG3426 3 YRILTINPGSTSTKLAVFEDEK-EIFEKTLRHSLEELEKFKR------IPDQFEFRKDAILEFIDEQGYNISKFDAVVGR 75 (358)
T ss_pred eeEEEecCCCccceEEEecCch-HhhHHHhhcCHHHHHHHhh------hhHhHhHHHHHHHHHHHHhCCCcCCccceeec
Confidence 4589999999999999999554 33322111 0111122211 11111111357888999999999999999633
Q ss_pred cC-----CC-------------------cchhhHHHHHHHHHHHhhcCCCEEEec
Q 039172 152 IG-----PG-------------------LSLCLRVGVQKARKIAGQFNLPIVGVH 182 (477)
Q Consensus 152 ~G-----PG-------------------~~t~LrvG~~~Ak~La~~~~~Pli~V~ 182 (477)
-| || .-. -.+|...|+.+|..+|+|-+-|.
T Consensus 76 GGLL~pi~gGTY~Vn~~M~~~lk~~~~G~ha-SnLGaiiA~~ia~~~gvPayIVD 129 (358)
T COG3426 76 GGLLRPIPGGTYVVNEKMLKDLKNGVQGEHA-SNLGAIIANRIAKALGVPAYIVD 129 (358)
T ss_pred CccccccCCceeEeCHHHHHHHHcCCCCcch-hhhhHHHHHHHhhhcCCCeeeeC
Confidence 22 22 111 13677889999999999976554
No 30
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=97.28 E-value=0.008 Score=63.01 Aligned_cols=231 Identities=17% Similarity=0.259 Sum_probs=115.5
Q ss_pred hHHHHHHHHHHHCCCCCCCcCEEEEe-----cCCCc--chhhHHHHHHHHHHHhhcCCCE------------------EE
Q 039172 126 AIDPVVQEALHKANLTERDLSAVAVT-----IGPGL--SLCLRVGVQKARKIAGQFNLPI------------------VG 180 (477)
Q Consensus 126 ~l~~~i~~~L~~agi~~~did~IAvt-----~GPG~--~t~LrvG~~~Ak~La~~~~~Pl------------------i~ 180 (477)
....+++++|+++++++++||+|+.- .-|.. ..++.+|- ...||...++|+ ++
T Consensus 69 ~~a~av~~~l~~~~i~~~~I~~IgsHGQTv~H~P~~~~~~TlQiG~--~~~iA~~tgi~vV~DFR~~Dia~GGqGAPLvP 146 (364)
T PF03702_consen 69 LFADAVNQFLKKNGISPSDIDLIGSHGQTVFHRPEGQHPFTLQIGD--PAVIAERTGITVVSDFRSADIAAGGQGAPLVP 146 (364)
T ss_dssp HHHHHHHHHHHHCT--GGGEEEEEE--EEEEEECCCTTTEEEEES---HHHHHHHHSS-EEE--CHHHHHTTS-S---CH
T ss_pred HHHHHHHHHHHHcCCCcccccEEEeCCcceecCcCCCCCceEecCC--HHHHHHHHCcCEEeechHHHHhccCCCCCccc
Confidence 35678999999999999999999843 23521 23455554 234566666655 33
Q ss_pred eccHHHHHHHHHHhhhhcCCcCceeeeeccceeeeeccCCceEEEEEccCCceeEecccccchhhhH-HHHH-HHHcCCC
Q 039172 181 VHHMEAHALVARQWLTMTRMQNDFLDLFNNIHIGQKDTSGHNLLVLAHNLGQYTQLGTTIDDAIGEA-FDKT-AKWLGLD 258 (477)
Q Consensus 181 V~H~~AHa~sa~~~~~~~~~~~P~l~llDgvyvG~~~SGGht~lv~v~~~~~~~iLg~t~D~S~Ge~-fDkv-Ar~LGl~ 258 (477)
+-|-. .+ .....+.+++= .||-.-+-++...++ ++ -.|...|.+ .|.. .+..|.+
T Consensus 147 ~~~~~------lf----~~~~~~~~~lN---------IGGIaNiT~l~~~~~--~~--~fDtGPGN~liD~~~~~~~~~~ 203 (364)
T PF03702_consen 147 FFHQL------LF----RHPKKPRAVLN---------IGGIANITFLPPGGD--VI--GFDTGPGNMLIDAWIQRHTGLP 203 (364)
T ss_dssp HHHHH------HH------TTS-EEEEE---------ESSEEEEEEE-TTS----E--EEEEEESSHHHHHHHHHHCS-S
T ss_pred HHHHH------Hh----CCCCCCEEEEe---------cCCceEEEEecCCCC--ce--eeccCcHHHHHHHHHHHHhCCC
Confidence 22210 11 11122322221 466444444433222 22 247788875 6765 4678888
Q ss_pred CCCCChhHHHHhhhcCCCc-----------cccccccccCCCCceeecchHHHHHHHHHHhhcCCCCCCCCCCcccccCC
Q 039172 259 MRRSGGPAVEKLALEGDAE-----------SVKFSTPMKQHKDCNFSYAGLKTQVRLAIESKNIDSRIPISSTSCQDRKS 327 (477)
Q Consensus 259 ~~~~gG~~iE~LA~~g~~~-----------~~~fp~p~~~~~~~~fSFSGlktav~~~i~~~~~~~~~~~~~~~~~~~~~ 327 (477)
|..+| ++|..|+.+ .|..+.|.+. ..-+|. + ..+...+++. ...
T Consensus 204 yD~~G-----~~A~~G~v~~~ll~~ll~~pyf~~~pPKSt-GrE~F~---~-~~l~~~l~~~---------------~~~ 258 (364)
T PF03702_consen 204 YDKDG-----EWAASGKVNEELLDRLLSHPYFKRPPPKST-GREDFG---L-EWLQQILDKF---------------SLS 258 (364)
T ss_dssp S-GGG-----HHHHCS---HHHHHHHHTSHHHHS-SS-----TTTSS---H-HHHHHHCTTS---------------TT-
T ss_pred cCcCc-----HhhCcCCCCHHHHHHHhcCccccCCCCCcC-CccccC---H-HHHHHHHHhc---------------CCC
Confidence 87333 245555442 2333444321 112342 1 1122222211 013
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCC-CC--CCcHHH
Q 039172 328 RANIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPP-SL--CTDNGV 404 (477)
Q Consensus 328 ~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~-~~--ctDNGa 404 (477)
.+|+.|.+-+-.+..|++-+++. ....++|+++||=+-|..|.++|++.+.. .+|..... -. =-=.++
T Consensus 259 ~~D~~aTlt~~TA~sI~~~i~~~-------~~~~~~v~v~GGGa~N~~L~~~L~~~l~~--~~v~~~~~~gi~~~~~EA~ 329 (364)
T PF03702_consen 259 PEDILATLTEFTAQSIADAIRRF-------PPQPDEVYVCGGGARNPFLMERLQERLPG--IPVKTTDELGIPPDAKEAM 329 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------TT-EEEEEESGGGG-HHHHHHHHHH-TT--CEEEEGGGGTS-CCCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc-------CCCCceEEEECCCcCCHHHHHHHHhhCCC--CEEecHHHcCCCHHHHHHH
Confidence 68887777666666665544432 12367999999999999999999998753 45543221 01 112478
Q ss_pred HHHHHHHHHHH
Q 039172 405 MVAWTGIEHFC 415 (477)
Q Consensus 405 mIa~ag~~~~~ 415 (477)
+.||.|++++.
T Consensus 330 aFA~La~~~~~ 340 (364)
T PF03702_consen 330 AFAWLAYRRLN 340 (364)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHc
Confidence 88999998865
No 31
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=97.25 E-value=0.18 Score=51.13 Aligned_cols=111 Identities=26% Similarity=0.317 Sum_probs=75.5
Q ss_pred CCCcEEEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHH-HHHHhHHHHHHHHHHHCCCCCCCcCEE
Q 039172 70 KDDLIILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEE-AHSLAIDPVVQEALHKANLTERDLSAV 148 (477)
Q Consensus 70 ~~~m~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~-~H~~~l~~~i~~~L~~agi~~~did~I 148 (477)
...+++||||-+.+.+.++++|.+|+++......- |..... .-.+.|...+++++++.+ ...++-.|
T Consensus 3 ~~~~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~-----------~~~~~~~~~~~~i~~~i~~~~~~~~-~~~~~iGI 70 (314)
T COG1940 3 PEAMTVLGIDIGGTKIKVALVDLDGEILLRERIPT-----------PTPDPEEAILEAILALVAELLKQAQ-GRVAIIGI 70 (314)
T ss_pred ccCcEEEEEEecCCEEEEEEECCCCcEEEEEEEec-----------CCCCchhHHHHHHHHHHHHHHHhcC-CcCceEEE
Confidence 35678999999999999999999899876654331 112222 345678888999998776 32234444
Q ss_pred EEecCCCcchhh-----------HHHHHHHHHHHhhcCCCEEEeccHHHHHHHHHH
Q 039172 149 AVTIGPGLSLCL-----------RVGVQKARKIAGQFNLPIVGVHHMEAHALVARQ 193 (477)
Q Consensus 149 Avt~GPG~~t~L-----------rvG~~~Ak~La~~~~~Pli~V~H~~AHa~sa~~ 193 (477)
+++ |||.+..- .-...+++.|...+++|+.--|--.+-|++-.+
T Consensus 71 gi~-~pg~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~Pv~veNDan~aalaE~~ 125 (314)
T COG1940 71 GIP-GPGDVDNGTVIVPAPNLGWWNGVDLAEELEARLGLPVFVENDANAAALAEAW 125 (314)
T ss_pred Eec-cceeccCCcEEeecCCCCccccccHHHHHHHHHCCCEEEecHHHHHHHHHHH
Confidence 443 67654431 223457899999999999877776666665444
No 32
>PRK09557 fructokinase; Reviewed
Probab=97.16 E-value=0.25 Score=49.94 Aligned_cols=104 Identities=17% Similarity=0.175 Sum_probs=63.5
Q ss_pred EEEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEecC
Q 039172 74 IILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVTIG 153 (477)
Q Consensus 74 ~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt~G 153 (477)
+.||||-..+.+.++++|.+|+++......- |......-.+.+...+++.+++. .++.+|+++.
T Consensus 1 ~~lgidig~t~~~~~l~d~~g~i~~~~~~~~-----------~~~~~~~~~~~i~~~i~~~~~~~----~~~~gIgi~~- 64 (301)
T PRK09557 1 MRIGIDLGGTKIEVIALDDAGEELFRKRLPT-----------PRDDYQQTIEAIATLVDMAEQAT----GQRGTVGVGI- 64 (301)
T ss_pred CEEEEEECCCcEEEEEECCCCCEEEEEEecC-----------CCCCHHHHHHHHHHHHHHHHhhc----CCceEEEecC-
Confidence 3699999999999999998898876643210 11111222344444555554432 2456677665
Q ss_pred CCcch---h--------hHHHHHHHHHHHhhcCCCEEEeccHHHHHHHHHH
Q 039172 154 PGLSL---C--------LRVGVQKARKIAGQFNLPIVGVHHMEAHALVARQ 193 (477)
Q Consensus 154 PG~~t---~--------LrvG~~~Ak~La~~~~~Pli~V~H~~AHa~sa~~ 193 (477)
||.+. + ..-+..+.+.|...+++|++-.|-..+.|++-+.
T Consensus 65 pG~vd~~~g~i~~~~~~~~~~~~l~~~l~~~~~~pv~~~NDa~aaA~aE~~ 115 (301)
T PRK09557 65 PGSISPYTGLVKNANSTWLNGQPLDKDLSARLNREVRLANDANCLAVSEAV 115 (301)
T ss_pred cccCcCCCCeEEecCCccccCCCHHHHHHHHHCCCEEEccchhHHHHHHHH
Confidence 55431 1 0123456677888889999888877777766543
No 33
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=96.98 E-value=0.51 Score=47.80 Aligned_cols=105 Identities=20% Similarity=0.242 Sum_probs=74.3
Q ss_pred EEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEecCCC
Q 039172 76 LGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVTIGPG 155 (477)
Q Consensus 76 LgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt~GPG 155 (477)
||||-+.+.+.++++|.+|+++....... + .....-.+.+...+++++++.++...++.+|++.. ||
T Consensus 1 lgidig~t~~~~~l~d~~g~i~~~~~~~~-----------~-~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~-pG 67 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDEEGNILSKWKVPT-----------D-TTPETIVDAIASAVDSFIQHIAKVGHEIVAIGIGA-PG 67 (318)
T ss_pred CEEEeCCCEEEEEEECCCCCEEEEEEeCC-----------C-CCHHHHHHHHHHHHHHHHHhcCCCccceEEEEEec-cc
Confidence 58899999999999998899887654321 1 12233456777889999999888888898888875 66
Q ss_pred cch---hh-----H---HHHHHHHHHHhhcCCCEEEeccHHHHHHHHHH
Q 039172 156 LSL---CL-----R---VGVQKARKIAGQFNLPIVGVHHMEAHALVARQ 193 (477)
Q Consensus 156 ~~t---~L-----r---vG~~~Ak~La~~~~~Pli~V~H~~AHa~sa~~ 193 (477)
.+. +. . -+..+.+.|...+++|++-.|...+.+++-++
T Consensus 68 ~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~pv~v~NDa~~~alaE~~ 116 (318)
T TIGR00744 68 PVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLPVVVENDANAAALGEYK 116 (318)
T ss_pred cccCCCCEEEecCCCCCCCCCHHHHHHHHHCCCEEEechHHHHHHHHHH
Confidence 432 11 0 13346777888899999888877776665443
No 34
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=96.97 E-value=0.24 Score=50.05 Aligned_cols=103 Identities=16% Similarity=0.126 Sum_probs=62.4
Q ss_pred EEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEecCC
Q 039172 75 ILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVTIGP 154 (477)
Q Consensus 75 iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt~GP 154 (477)
+||||-..+.+.++++|.+|+++.....+- |........+.+...++++..+. ..+.+|+++. |
T Consensus 2 ~lgidig~t~i~~~l~d~~g~i~~~~~~~~-----------~~~~~~~~~~~i~~~i~~~~~~~----~~~~~igia~-p 65 (303)
T PRK13310 2 YYGFDIGGTKIELGVFNEKLELQWEERVPT-----------PRDSYDAFLDAVCELVAEADQRF----GCKGSVGIGI-P 65 (303)
T ss_pred eEEEEeCCCcEEEEEECCCCcEEEEEEecC-----------CCcCHHHHHHHHHHHHHHHHhhc----CCcceEEEeC-C
Confidence 699999999999999998888886654321 11222223334444444443322 2234677664 5
Q ss_pred Ccch---hhH--------HHHHHHHHHHhhcCCCEEEeccHHHHHHHHHH
Q 039172 155 GLSL---CLR--------VGVQKARKIAGQFNLPIVGVHHMEAHALVARQ 193 (477)
Q Consensus 155 G~~t---~Lr--------vG~~~Ak~La~~~~~Pli~V~H~~AHa~sa~~ 193 (477)
|.+. +.. -++.+.+.|...+++|++-.|-..+.+++-+.
T Consensus 66 G~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~pV~ieNDa~aaalaE~~ 115 (303)
T PRK13310 66 GMPETEDGTLYAANVPAASGKPLRADLSARLGRDVRLDNDANCFALSEAW 115 (303)
T ss_pred CcccCCCCEEeccCcccccCCcHHHHHHHHHCCCeEEeccHhHHHHHHhh
Confidence 5431 110 12356778888899999888877777665443
No 35
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=96.73 E-value=0.76 Score=46.11 Aligned_cols=101 Identities=19% Similarity=0.241 Sum_probs=62.3
Q ss_pred cEEEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEec
Q 039172 73 LIILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVTI 152 (477)
Q Consensus 73 m~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt~ 152 (477)
|.+||||-..+.+.++++|.+|+++.....+ . |.... .+.+...+.+++++.. .+++.|+++.
T Consensus 1 ~~~lgvdig~~~i~~~l~dl~g~i~~~~~~~---~--------~~~~~---~~~~~~~i~~~i~~~~---~~~~~igi~~ 63 (291)
T PRK05082 1 MTTLAIDIGGTKIAAALVGEDGQIRQRRQIP---T--------PASQT---PEALRQALSALVSPLQ---AQADRVAVAS 63 (291)
T ss_pred CcEEEEEECCCEEEEEEEcCCCcEEEEEEec---C--------CCCCC---HHHHHHHHHHHHHHhh---hcCcEEEEeC
Confidence 5689999999999999999899988654422 1 10001 1223344444444331 2566787775
Q ss_pred CCCcch-------------hhHHHHHHHHHHHhhcCCCEEEeccHHHHHHHHH
Q 039172 153 GPGLSL-------------CLRVGVQKARKIAGQFNLPIVGVHHMEAHALVAR 192 (477)
Q Consensus 153 GPG~~t-------------~LrvG~~~Ak~La~~~~~Pli~V~H~~AHa~sa~ 192 (477)
||.+. ++ -++.+.+.|...+++|++-.|...+-+++-+
T Consensus 64 -pG~vd~~~~~~~~~~~~~~w-~~~~l~~~l~~~~~~pv~v~NDa~a~a~aE~ 114 (291)
T PRK05082 64 -TGIINDGILTALNPHNLGGL-LHFPLVQTLEQLTDLPTIALNDAQAAAWAEY 114 (291)
T ss_pred -cccccCCeeEEecCCCCccc-cCCChHHHHHHHhCCCEEEECcHHHHHHHHH
Confidence 44331 11 1445677788888999988887666555443
No 36
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=96.70 E-value=0.34 Score=50.73 Aligned_cols=66 Identities=20% Similarity=0.305 Sum_probs=45.4
Q ss_pred EEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHH---HHHHHHHHHCCCCCCCcCEEE
Q 039172 75 ILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAID---PVVQEALHKANLTERDLSAVA 149 (477)
Q Consensus 75 iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~---~~i~~~L~~agi~~~did~IA 149 (477)
||.|+..+..+.+||++.+++++........+....|..+ .+.+. ..|.+.|++.++..++|++|+
T Consensus 2 il~in~Gsts~k~alf~~~~~~~~~~~~~~~~~~~~~~~~---------~~q~~~r~~~i~~~l~~~~~~~~~i~av~ 70 (351)
T TIGR02707 2 ILVINPGSTSTKLAVFEDERPLFEETLRHSVEELGRFKNV---------IDQFEFRKQVILQFLEEHGISISKLDAVV 70 (351)
T ss_pred EEEEecCchhheEEEEeCCCceeeeeecCCHHHhcccccH---------HHHHHHHHHHHHHHHHHcCCCcccccEEE
Confidence 8999999999999999988887765543221111111111 22333 677888888998888899994
No 37
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=96.42 E-value=0.61 Score=47.63 Aligned_cols=75 Identities=21% Similarity=0.325 Sum_probs=55.3
Q ss_pred CCcEEEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEE
Q 039172 71 DDLIILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAV 150 (477)
Q Consensus 71 ~~m~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAv 150 (477)
.++++||||.....|-+.|.+.+|+++......- ..| ..+| ...-..++..+|.+++.++|+++++|+.+.+
T Consensus 3 ~~~~~lGVDGGGTkt~a~l~~~~g~vlg~g~sGp----AN~-~~~~---~e~A~~ni~~ai~~A~~~aG~~~~~i~~~~a 74 (301)
T COG2971 3 PMPYFLGVDGGGTKTRAVLADEDGNVLGRGKSGP----ANI-QLVG---KEEAVRNIKDAIREALDEAGLKPDEIAAIVA 74 (301)
T ss_pred CccEEEEEccCCcceEEEEEcCCCcEEEEeccCC----cee-cccc---hHHHHHHHHHHHHHHHHhcCCCHHHhCceee
Confidence 3678999999999999888888899998764321 111 1223 1223467888999999999999999998876
Q ss_pred ecC
Q 039172 151 TIG 153 (477)
Q Consensus 151 t~G 153 (477)
..+
T Consensus 75 gla 77 (301)
T COG2971 75 GLA 77 (301)
T ss_pred eee
Confidence 654
No 38
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.62 Score=48.71 Aligned_cols=82 Identities=18% Similarity=0.310 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcC-CCCCCCcH--H
Q 039172 327 SRANIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCP-PPSLCTDN--G 403 (477)
Q Consensus 327 ~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~P-p~~~ctDN--G 403 (477)
+.+|+++.+-+..+..|++.+. -+ ....+.++++||=+-|..|.++|...++ |.+|.-. +.-+.+|. +
T Consensus 264 ~a~Dv~aTL~eltA~tIv~s~~-~~------~~~p~~l~vcGGG~~N~llm~rLa~l~~--g~~V~~t~~~g~~gd~~EA 334 (371)
T COG2377 264 NAEDVQATLVELTAATIVKSVA-TL------QGDPRRLVVCGGGRRNPLLMARLAALLE--GVEVATTDEAGLDGDAVEA 334 (371)
T ss_pred CHHHHHHHHHHHHHHHHHHHHh-hc------cCCCceeEeecCCccCHHHHHHHHHhcC--CCeeeechhcCCCcchhhH
Confidence 4788888777777777766543 11 4677899999999999999999998876 6665532 33445554 4
Q ss_pred HHHHHHHHHHHHcCC
Q 039172 404 VMVAWTGIEHFCVGR 418 (477)
Q Consensus 404 amIa~ag~~~~~~g~ 418 (477)
...+|.++.+ .+|.
T Consensus 335 ~afA~LA~r~-l~g~ 348 (371)
T COG2377 335 EAFAWLAWRT-LEGL 348 (371)
T ss_pred HHHHHHHHHH-HhCC
Confidence 5567778776 5565
No 39
>PLN02920 pantothenate kinase 1
Probab=96.07 E-value=2.5 Score=44.85 Aligned_cols=218 Identities=13% Similarity=0.117 Sum_probs=123.4
Q ss_pred CCCcCEEEEecCCCcchhhHHHHHHHHHHHhhcCCCEEEeccHHHHHHHHHHhhhh--c-----------------CCcC
Q 039172 142 ERDLSAVAVTIGPGLSLCLRVGVQKARKIAGQFNLPIVGVHHMEAHALVARQWLTM--T-----------------RMQN 202 (477)
Q Consensus 142 ~~did~IAvt~GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~H~~AHa~sa~~~~~~--~-----------------~~~~ 202 (477)
..++..|.+|-| |. .-++.-+...+++++.-+.+|++......+...+ + +..+
T Consensus 94 ~~~~~~i~~TGG-GA-------~k~~~~~~~~~~i~~~k~DEm~~li~Gl~fLl~~~~~e~f~y~~~~~~~~~~~~~~ly 165 (398)
T PLN02920 94 THDKNFIKATGG-GA-------YKFADLFKEKLGISLDKEDEMDCLVTGANFLLKAVHHEAFTYLDGQKEFVQIDHNDLY 165 (398)
T ss_pred CCCceEEEEECC-cH-------HHHHHHHHhhhCCCceeecHHHHHHHHHHHHHhhCCcceeEeccCcccccccCccccC
Confidence 357788888854 32 1244445556678887889999988876552110 0 1256
Q ss_pred ceeeeeccceeeeeccCCceEEEEEccCCceeEecccccchh-hhHHHHHHHHcC-CCCCCCChhHHHHhhhcCCCcccc
Q 039172 203 DFLDLFNNIHIGQKDTSGHNLLVLAHNLGQYTQLGTTIDDAI-GEAFDKTAKWLG-LDMRRSGGPAVEKLALEGDAESVK 280 (477)
Q Consensus 203 P~l~llDgvyvG~~~SGGht~lv~v~~~~~~~iLg~t~D~S~-Ge~fDkvAr~LG-l~~~~~gG~~iE~LA~~g~~~~~~ 280 (477)
|+|.+= + |--+.++.|++.++|+++|.| ++ |--|--.+++|- ..- =-.|-+||..||...++
T Consensus 166 PyLLVN----I-----GSGVSilkV~~~~~~~RVgGT---sIGGGT~~GL~~LLtg~~s----fdEll~lA~~Gd~~nvD 229 (398)
T PLN02920 166 PYLLVN----I-----GSGVSMIKVDGDGKFERVSGT---SVGGGTFWGLGKLLTKCKS----FDELLELSHQGNNRVID 229 (398)
T ss_pred ceEEEE----c-----CCCEEEEEEeCCCcEEEEccc---ccchHhHHHHHHHHcCCCC----HHHHHHHHhCCCccccC
Confidence 887754 3 322678888888899999876 23 233444454442 211 12555689999876544
Q ss_pred cccc-ccCCCCceeecchHHHHHHHHHHhhcCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 039172 281 FSTP-MKQHKDCNFSYAGLKTQVRLAIESKNIDSRIPISSTSCQDRKSRANIAASFQRVAVLHLEERCERAIEWALKIEP 359 (477)
Q Consensus 281 fp~p-~~~~~~~~fSFSGlktav~~~i~~~~~~~~~~~~~~~~~~~~~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~ 359 (477)
+-.. +.. +.+..-.||+.... .....+-. .. ..+......+|||+|+...+.+.+...+....+ ..
T Consensus 230 llVgDIYG--g~~y~~~gL~~d~i--ASsFGKv~-~~---~~~~~~~s~eDia~SLL~mVs~nIgqiA~L~A~-----~~ 296 (398)
T PLN02920 230 MLVGDIYG--GMDYSKIGLSSTTI--ASSFGKAI-SD---NKELEDYKPEDVARSLLRMISNNIGQISYLNAL-----RF 296 (398)
T ss_pred ceeccccC--CCCCCCCCCCccce--eeccCccc-cc---ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH-----Hc
Confidence 3110 000 00111112221100 00000000 00 000012348999999999999999988766655 67
Q ss_pred CCcEEEEEchhHhhH-HHHHHHH---HHHHcCCCEEEcCCC
Q 039172 360 SIKHLVVSGGVASNK-YVRARLD---RAVKNNSLQLVCPPP 396 (477)
Q Consensus 360 ~~~~lvlsGGVA~N~-~Lr~~L~---~~~~~~g~~l~~Pp~ 396 (477)
++++|+++|.-..|. ...+.|. +.-.....+.+|+..
T Consensus 297 ~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrH 337 (398)
T PLN02920 297 GLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRH 337 (398)
T ss_pred CCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecC
Confidence 899999999966665 4444332 333456688888874
No 40
>PRK09698 D-allose kinase; Provisional
Probab=95.82 E-value=2.4 Score=42.68 Aligned_cols=103 Identities=19% Similarity=0.255 Sum_probs=69.8
Q ss_pred EEEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEecC
Q 039172 74 IILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVTIG 153 (477)
Q Consensus 74 ~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt~G 153 (477)
++||||-+-+.+.++++|.+|+++......- . +...... .+.+...+++++++.+ .++.+|++..
T Consensus 5 ~~lgidig~t~i~~~l~d~~g~i~~~~~~~~-----~-----~~~~~~~-~~~l~~~i~~~~~~~~---~~i~gigia~- 69 (302)
T PRK09698 5 VVLGIDMGGTHIRFCLVDAEGEILHCEKKRT-----A-----EVIAPDL-VSGLGEMIDEYLRRFN---ARCHGIVMGF- 69 (302)
T ss_pred EEEEEEcCCcEEEEEEEcCCCCEEEEEEeCC-----c-----cccchHH-HHHHHHHHHHHHHHcC---CCeeEEEEeC-
Confidence 5899999999999999998899987654321 0 0011122 6677778888888765 4678888775
Q ss_pred CCcch---h-------h----HHHHHHHHHHHhhcCCCEEEeccHHHHHHHH
Q 039172 154 PGLSL---C-------L----RVGVQKARKIAGQFNLPIVGVHHMEAHALVA 191 (477)
Q Consensus 154 PG~~t---~-------L----rvG~~~Ak~La~~~~~Pli~V~H~~AHa~sa 191 (477)
||.+. + + --+..+++.|...+++|++-.|...+.++.-
T Consensus 70 pG~vd~~~g~i~~~~~~~~~~~~~~~l~~~l~~~~~~pv~v~NDa~aaa~~E 121 (302)
T PRK09698 70 PALVSKDRRTVISTPNLPLTALDLYDLADKLENTLNCPVFFSRDVNLQLLWD 121 (302)
T ss_pred CcceeCCCCEEEecCCCCccccccCCHHHHHHHHhCCCEEEcchHhHHHHHH
Confidence 55431 0 1 1233467778888999998888777765543
No 41
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=95.51 E-value=1.1 Score=46.67 Aligned_cols=207 Identities=16% Similarity=0.187 Sum_probs=114.9
Q ss_pred CCcCEEEEecCCCcchhhHHHHHHHHHHHhhcCCCEEEeccHHHHHHHHHHhhh----h-------------------cC
Q 039172 143 RDLSAVAVTIGPGLSLCLRVGVQKARKIAGQFNLPIVGVHHMEAHALVARQWLT----M-------------------TR 199 (477)
Q Consensus 143 ~did~IAvt~GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~H~~AHa~sa~~~~~----~-------------------~~ 199 (477)
.....|.+|-| |. .-+++-+...+++.+.-+..|++.+....+... + ..
T Consensus 82 ~~~~~I~aTGG-GA-------~Ky~~~~~~~Lgv~v~K~DEm~clI~Gl~fLl~~i~~E~f~y~~~~~~~~~~~~~~~~~ 153 (341)
T PF03630_consen 82 QKITKICATGG-GA-------FKYADLFKEKLGVEVQKEDEMECLIKGLNFLLKNIPDEVFTYDNDEDPEKFEKVPIDNS 153 (341)
T ss_dssp GCSSEEEEEST-TH-------HHHHCHHHCTSTSEEEE--HHHHHHHHHHHHHHTTB-SEEEEETTTSTTT-EEEEETTS
T ss_pred ccceEEEEeCC-cH-------HHHHHHHHHhcCCCeeEehHHHHHHhhHHHHHhcCCcceEEEecCCCcceecccccCCC
Confidence 45667777754 43 245666777889999999999999876544211 0 01
Q ss_pred CcCceeeeeccceeeeeccCCceEEEEEccCCceeEecccccchhhhHHHHHHHHc-CCCCCCCChhHHHHhhhcCCCcc
Q 039172 200 MQNDFLDLFNNIHIGQKDTSGHNLLVLAHNLGQYTQLGTTIDDAIGEAFDKTAKWL-GLDMRRSGGPAVEKLALEGDAES 278 (477)
Q Consensus 200 ~~~P~l~llDgvyvG~~~SGGht~lv~v~~~~~~~iLg~t~D~S~Ge~fDkvAr~L-Gl~~~~~gG~~iE~LA~~g~~~~ 278 (477)
..+|++.+= +| || +.++.|++.+.|+++|.|-= . |-.|--.+++| |..-. -.+-+||..|+...
T Consensus 154 ~~~Pyllvn----iG---sG--vSi~~v~~~~~~~rvgGs~i-G-GgT~~GL~~llt~~~~~----~e~~~la~~G~~~~ 218 (341)
T PF03630_consen 154 DIYPYLLVN----IG---SG--VSILKVEGPNQFERVGGSSI-G-GGTFWGLCSLLTGCKSF----DEILELAKKGDNSN 218 (341)
T ss_dssp S-SSEEEEE----ES---SS--EEEEEEEETTEEEEEEEES--S-HHHHHHHHHHHH---SH----HHHHHHHHH--GGG
T ss_pred CCCcEEEEE----cC---Cc--eEEEEEeCCCceEEEecccc-c-hHhHHHHHHHhcCCCCH----HHHHHHhcCCCccc
Confidence 235777654 42 33 67888888899999876521 1 33344445554 44211 25556999998754
Q ss_pred ccccc-----------cccCCCCceeecchHHHHHHHHHHhhcCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHH
Q 039172 279 VKFST-----------PMKQHKDCNFSYAGLKTQVRLAIESKNIDSRIPISSTSCQDRKSRANIAASFQRVAVLHLEERC 347 (477)
Q Consensus 279 ~~fp~-----------p~~~~~~~~fSFSGlktav~~~i~~~~~~~~~~~~~~~~~~~~~~~dIAasfQ~av~~~L~~~~ 347 (477)
.++-. ++.. +-..-||--+.+. -+.. .....+|+|+|+-..+...+...+
T Consensus 219 vDllV~DIyg~~y~~~~L~~-~~~AssFGk~~~~----~~~~--------------~~~~~~Dia~sll~mv~~nIg~la 279 (341)
T PF03630_consen 219 VDLLVGDIYGGDYNKIGLPG-DLTASSFGKVQSK----AKRK--------------DSFSKEDIAKSLLNMVSNNIGQLA 279 (341)
T ss_dssp TSEEHHHHHSS-BGGGTB-T-TSEEETTCCGGSH----HHH---------------CC--HHHHHHHHHHHHHHHHHHHH
T ss_pred cCceeeeccCCCcccCCCCH-HHHHhhhhhhhhc----cccc--------------ccCCHHHHHHHHHHHHHHHHHHHH
Confidence 43210 1110 0111223211110 0000 123479999999999999999887
Q ss_pred HHHHHHHhhcCCCCcEEEEEchhHhh-HHHHHHHH---HHHHcCCCEEEcCCC
Q 039172 348 ERAIEWALKIEPSIKHLVVSGGVASN-KYVRARLD---RAVKNNSLQLVCPPP 396 (477)
Q Consensus 348 ~ral~~~~~~~~~~~~lvlsGGVA~N-~~Lr~~L~---~~~~~~g~~l~~Pp~ 396 (477)
..+.+ ..++++|+++|.-..| ....+.|. +...+..++.+|+..
T Consensus 280 ~l~A~-----~~~~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h 327 (341)
T PF03630_consen 280 YLHAK-----IHGVKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRH 327 (341)
T ss_dssp HHHHH-----HHT--EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETT
T ss_pred HHHHH-----HcCCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecC
Confidence 66665 5688999999998865 45556665 333345678888763
No 42
>PRK00976 hypothetical protein; Provisional
Probab=95.16 E-value=1.7 Score=45.04 Aligned_cols=63 Identities=17% Similarity=0.377 Sum_probs=39.3
Q ss_pred cEEEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEec
Q 039172 73 LIILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVTI 152 (477)
Q Consensus 73 m~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt~ 152 (477)
|+.+|||-.+.-...|+++++..-++... +.+ ++..- ...++++ +.++..+|||.||+|+
T Consensus 1 ~~~~g~dhgt~~~~~~~~~~~~~~~f~~~--r~~------------~~~~~----~~~~~~~--~~~~~~~~i~~~~~~y 60 (326)
T PRK00976 1 MMFVGIDHGTTGIRFAIIEGGKKSIFKLP--RTE------------AKSME----KSALEEL--EKRVPLEDIELIAVTY 60 (326)
T ss_pred CeEEeecCCCccEEEEEEcCCceeEEEee--HHH------------hhhcc----HHHHHHH--hcCCChhheeEEEEee
Confidence 67899999999999999964433344332 211 11111 1223333 5678889999999997
Q ss_pred CCC
Q 039172 153 GPG 155 (477)
Q Consensus 153 GPG 155 (477)
.-|
T Consensus 61 smg 63 (326)
T PRK00976 61 SMG 63 (326)
T ss_pred ccc
Confidence 544
No 43
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=94.88 E-value=0.12 Score=48.46 Aligned_cols=63 Identities=25% Similarity=0.276 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCC
Q 039172 327 SRANIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPP 395 (477)
Q Consensus 327 ~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp 395 (477)
.+.++++++.+.++-.+.+.++..-+.. ...++.|+++||.+.|..+++.+.+.+ |.+|++++
T Consensus 119 ~~~~~~rAv~Egia~~~~~~~~~l~~~~---~~~~~~i~~~GG~~~n~~~~q~~Advl---~~~V~~~~ 181 (198)
T PF02782_consen 119 TRADLARAVLEGIAFSLRQILEELEELT---GIPIRRIRVSGGGAKNPLWMQILADVL---GRPVVRPE 181 (198)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH---TSCESEEEEESGGGGSHHHHHHHHHHH---TSEEEEES
T ss_pred CHHHHHHHHHHhHHHHHHHhhhhccccc---cccceeeEeccccccChHHHHHHHHHh---CCceEeCC
Confidence 3788888888877766655544432211 356899999999999999999998887 57888887
No 44
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=94.74 E-value=5.1 Score=40.10 Aligned_cols=60 Identities=13% Similarity=0.157 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCCCCCCcHHHHHHHH
Q 039172 339 AVLHLEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGVMVAWT 409 (477)
Q Consensus 339 v~~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~~~ctDNGamIa~a 409 (477)
..+.+.+.+++.++ ...+..|+++||.+....|.+.+.+.+ |.++..++. -+-.+.+|++
T Consensus 205 ~~~~i~~~i~~~l~-----~~~~~~IvLtGG~s~lpgl~e~l~~~l---g~~v~~~~~---P~~~~a~Gaa 264 (267)
T PRK15080 205 VVEKMASIVARHIE-----GQDVEDIYLVGGTCCLPGFEEVFEKQT---GLPVHKPQH---PLFVTPLGIA 264 (267)
T ss_pred HHHHHHHHHHHHHh-----cCCCCEEEEECCcccchhHHHHHHHHh---CCCcccCCC---chHHHHHHHH
Confidence 33444555566555 346789999999999999999998876 566666542 2334445544
No 45
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=94.14 E-value=0.16 Score=49.55 Aligned_cols=77 Identities=18% Similarity=0.251 Sum_probs=55.6
Q ss_pred EEEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEec
Q 039172 74 IILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVTI 152 (477)
Q Consensus 74 ~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt~ 152 (477)
++||||.++..+.++|+|.+|+++......- .......|.. +.....-.+.+...+++++++++....+|.+|+++.
T Consensus 1 y~lgiDiGTts~K~~l~d~~g~iv~~~~~~~-~~~~~~~g~~-e~d~~~~~~~~~~~~~~~~~~~~~~~~~I~aI~is~ 77 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDEDGKIVASASRPY-PYYTPEPGWA-EQDPDEIWEAICEALKELLSQAGIDPEQIKAIGISG 77 (245)
T ss_dssp EEEEEEECSSEEEEEEEETTSCEEEEEEEEE-TEBCSSTTEE-EE-HHHHHHHHHHHHHHHHHHCTSCGGGEEEEEEEE
T ss_pred CEEEEEEcccceEEEEEeCCCCEEEEEEEee-eecccccccc-ccChHHHHHHHHHHHHHHHhhcCcccceeEEEEecc
Confidence 5899999999999999999999998765432 1111111221 233445566777889999999999999999999874
No 46
>PTZ00297 pantothenate kinase; Provisional
Probab=93.40 E-value=7.3 Score=48.13 Aligned_cols=66 Identities=12% Similarity=0.135 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEch-hHhhHHHHHHHHHHHHcC---CCEEEcCCC
Q 039172 326 KSRANIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVSGG-VASNKYVRARLDRAVKNN---SLQLVCPPP 396 (477)
Q Consensus 326 ~~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~~~lvlsGG-VA~N~~Lr~~L~~~~~~~---g~~l~~Pp~ 396 (477)
...+|||+|+...+.+.|...+....+ ..++++|+++|+ +--|....+.|....+.. ..+.+|+..
T Consensus 1362 ~~~~Di~~sll~~is~nIgqia~l~a~-----~~~~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~h 1431 (1452)
T PTZ00297 1362 ASAIDIVRSLLNMISSNVTQLAYLHSR-----VQGVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEH 1431 (1452)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH-----HcCCCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecC
Confidence 358999999999999999987655554 678999999999 778888888877666544 678888874
No 47
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=93.19 E-value=0.46 Score=39.43 Aligned_cols=88 Identities=18% Similarity=0.175 Sum_probs=53.0
Q ss_pred cEEEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEec
Q 039172 73 LIILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVTI 152 (477)
Q Consensus 73 m~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt~ 152 (477)
|.+||||-....+.+|+++.+|+++...... ... ..+.+...+.+++++. +++.|++.
T Consensus 1 ~~ilgiD~Ggt~i~~a~~d~~g~~~~~~~~~-------------~~~---~~~~~~~~l~~~i~~~-----~~~~i~Ig- 58 (99)
T smart00732 1 KRVLGLDPGRKGIGVAVVDETGKLADPLEVI-------------PRT---NKEADAARLKKLIKKY-----QPDLIVIG- 58 (99)
T ss_pred CcEEEEccCCCeEEEEEECCCCCEecCEEEE-------------Eec---CcchHHHHHHHHHHHh-----CCCEEEEe-
Confidence 4689999999999999999888887543221 000 1223445666666653 57889888
Q ss_pred CCCcchhhHH---HHHHHHHHHhhcCCCEEEec
Q 039172 153 GPGLSLCLRV---GVQKARKIAGQFNLPIVGVH 182 (477)
Q Consensus 153 GPG~~t~Lrv---G~~~Ak~La~~~~~Pli~V~ 182 (477)
.||...+... -..+.+.|...+++|++-+|
T Consensus 59 ~pg~v~g~~~~~~~~~l~~~l~~~~~~pv~~~n 91 (99)
T smart00732 59 LPLNMNGTASRETEEAFAELLKERFNLPVVLVD 91 (99)
T ss_pred CCcCCCCCcCHHHHHHHHHHHHHhhCCcEEEEe
Confidence 4776544210 03344444455566655444
No 48
>PLN02295 glycerol kinase
Probab=92.52 E-value=0.39 Score=52.48 Aligned_cols=77 Identities=13% Similarity=0.111 Sum_probs=55.5
Q ss_pred EEEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCC----cCEEE
Q 039172 74 IILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERD----LSAVA 149 (477)
Q Consensus 74 ~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~d----id~IA 149 (477)
++||||..+..+.++|+|.+|++++....+. ..+.+..|.+ |.....-.+.+..++++++++++...++ |.+|+
T Consensus 1 ~vlgID~GTts~Ka~l~d~~G~~~~~~~~~~-~~~~~~~G~~-Eqdp~~~w~~~~~~i~~~~~~~~~~~~~i~~~i~aIg 78 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDRDARPVASHQVEF-TQIYPQAGWV-EHDPMEILESVLTCIAKALEKAAAKGHNVDSGLKAIG 78 (512)
T ss_pred CEEEEecCCCceEEEEECCCCCEEEEEeecc-cccCCCCCcE-eeCHHHHHHHHHHHHHHHHHHcCCCccccccceEEEE
Confidence 3799999999999999999999987654432 2222222332 2233445667778899999999888877 69999
Q ss_pred Eec
Q 039172 150 VTI 152 (477)
Q Consensus 150 vt~ 152 (477)
+|.
T Consensus 79 ~s~ 81 (512)
T PLN02295 79 ITN 81 (512)
T ss_pred Eec
Confidence 885
No 49
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=92.37 E-value=0.34 Score=52.18 Aligned_cols=109 Identities=21% Similarity=0.324 Sum_probs=74.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCCCCCCcHHHH
Q 039172 326 KSRANIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGVM 405 (477)
Q Consensus 326 ~~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~~~ctDNGam 405 (477)
..+++||++.-++++-...+.++ +++.- .......|-+-||-+.|.+|-+...+.+ |++|..|. ..+..+
T Consensus 371 t~~~hi~RA~LEsiayQ~~dv~~-aM~~d--~~~~~~~LrvDGG~s~n~~lmQfqADil---g~~V~Rp~----~~EtTA 440 (499)
T COG0554 371 TTKAHIARATLESIAYQTRDVLE-AMEKD--SGIKLTRLRVDGGASRNNFLMQFQADIL---GVPVERPV----VLETTA 440 (499)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHh--cCCCceeEEEcCccccchhHHHHHHHHh---CCeeeccc----cchhhH
Confidence 35899999988888777666554 33311 1123788999999999999999888775 78999987 455566
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCCCcccccccCCCCcccccccchhhhc
Q 039172 406 VAWTGIEHFCVGRFDPPPPADDPEDFMYDLRPRWPLGEEFAEGRSEARS 454 (477)
Q Consensus 406 Ia~ag~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 454 (477)
+|+|.+--+..|... ++ -+..-.|++++.+.....+++.
T Consensus 441 lGaA~lAGla~G~w~---------~~-~el~~~~~~~~~f~p~m~~~~r 479 (499)
T COG0554 441 LGAAYLAGLAVGFWK---------DL-DELAELWPLDKEFEPGMDEEER 479 (499)
T ss_pred HHHHHHHhhhhCcCC---------CH-HHHHhhhcccceeCCCCCHHHH
Confidence 776655555666532 11 1223678888887776665443
No 50
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=92.30 E-value=0.75 Score=42.99 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.1
Q ss_pred CcEEEEEecccccceEEEEecCCe
Q 039172 72 DLIILGIETSCDDTAAAVVRGNGE 95 (477)
Q Consensus 72 ~m~iLgIeTS~ddtsvAlv~~dg~ 95 (477)
+|.|||||-|...|+.|+++.+++
T Consensus 1 ~m~iLGIDPgl~~tG~avi~~~~~ 24 (164)
T PRK00039 1 MMRILGIDPGLRRTGYGVIEVEGR 24 (164)
T ss_pred CCEEEEEccccCceeEEEEEecCC
Confidence 489999999999999999986654
No 51
>PLN02902 pantothenate kinase
Probab=91.71 E-value=7.6 Score=45.10 Aligned_cols=217 Identities=14% Similarity=0.129 Sum_probs=121.6
Q ss_pred CCcCEEEEecCCCcchhhHHHHHHHHHHHhhcCCCEEEeccHHHHHHHHHHhhhh-------------------cCCcCc
Q 039172 143 RDLSAVAVTIGPGLSLCLRVGVQKARKIAGQFNLPIVGVHHMEAHALVARQWLTM-------------------TRMQND 203 (477)
Q Consensus 143 ~did~IAvt~GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~H~~AHa~sa~~~~~~-------------------~~~~~P 203 (477)
.++..|.+|-| |.+ -+..-+...+++++.-+..|++-.....+.... ....+|
T Consensus 144 ~~~~~i~aTGG-GA~-------K~~~~~~~~l~~~l~k~DEm~~li~Gl~fLl~~i~~e~f~~~~~~~~~~~~~~~~lyP 215 (876)
T PLN02902 144 NGNGVIKATGG-GAY-------KFADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGEKEFVQIDQNDLFP 215 (876)
T ss_pred CCceEEEEeCC-ccc-------cHHHHHHHHhCCCeeeecHHHHHHHHHHHHHhhCcchheeeccccccccccCccCCCc
Confidence 35667777754 433 355566667888999999999988776542100 013467
Q ss_pred eeeeeccceeeeeccCCceEEEEEccCCceeEecccccchh-hhHHHHHHHHc-CCCCCCCChhHHHHhhhcCCCccccc
Q 039172 204 FLDLFNNIHIGQKDTSGHNLLVLAHNLGQYTQLGTTIDDAI-GEAFDKTAKWL-GLDMRRSGGPAVEKLALEGDAESVKF 281 (477)
Q Consensus 204 ~l~llDgvyvG~~~SGGht~lv~v~~~~~~~iLg~t~D~S~-Ge~fDkvAr~L-Gl~~~~~gG~~iE~LA~~g~~~~~~f 281 (477)
+|.+= +| || +.++.|++.++|+.+|.| ++ |--|--.+++| |..-. -.|-+||..|+...+++
T Consensus 216 yLLVN----IG---SG--VSilkV~~~~~~~RVgGT---sIGGGT~~GL~~LLtg~~sF----dEll~LA~~Gd~~~vDl 279 (876)
T PLN02902 216 YLLVN----IG---SG--VSMIKVDGDGKFERVSGT---NVGGGTYWGLGRLLTKCKSF----DELLELSQRGDNSAIDM 279 (876)
T ss_pred eEEEE----cC---Cc--eEEEEEecCCcEEEeccc---ccccHhHHHHHHHHcCCCCH----HHHHHHHhcCCccccCe
Confidence 77654 32 33 578888888899999876 23 23333444444 43211 25556999999865544
Q ss_pred ccc-ccCCCCceeecchHHHHHHHHHHhhcCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 039172 282 STP-MKQHKDCNFSYAGLKTQVRLAIESKNIDSRIPISSTSCQDRKSRANIAASFQRVAVLHLEERCERAIEWALKIEPS 360 (477)
Q Consensus 282 p~p-~~~~~~~~fSFSGlktav~~~i~~~~~~~~~~~~~~~~~~~~~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~ 360 (477)
-.. +.. +.+++-.||+.... .....+-. .. .........+|||+|+...+.+.|...+....+ ..+
T Consensus 280 lVgDIYG--g~~y~~~GL~~d~i--ASSFGKv~-~~---~~~~~~~s~eDiarSLL~mIs~NIGqiA~L~A~-----~~~ 346 (876)
T PLN02902 280 LVGDIYG--GMDYSKIGLSASTI--ASSFGKVI-SE---NKELSDYRPEDISLSLLRMISYNIGQISYLNAL-----RFG 346 (876)
T ss_pred eeccccC--CCCcCCCCCCcchh--hhccCccc-cc---ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH-----HcC
Confidence 110 110 01111123332211 00111000 00 000012358999999999999999988766555 678
Q ss_pred CcEEEEEchhHhh-HHHHHHHHHHH---HcCCCEEEcCCC
Q 039172 361 IKHLVVSGGVASN-KYVRARLDRAV---KNNSLQLVCPPP 396 (477)
Q Consensus 361 ~~~lvlsGGVA~N-~~Lr~~L~~~~---~~~g~~l~~Pp~ 396 (477)
+++|+++|.--.| ...-+.|.... .+...+.+|+..
T Consensus 347 ikrIvF~G~fIr~h~~tm~~ls~Ai~fwSkg~~~a~FlrH 386 (876)
T PLN02902 347 LKRIFFGGFFIRGHAYTMDTISFAVHFWSKGEAQAMFLRH 386 (876)
T ss_pred CCEEEEecceecCCcchHHHHHHHHHHhcCCceEEEEecc
Confidence 9999999995433 33333333322 233467777765
No 52
>PRK00047 glpK glycerol kinase; Provisional
Probab=91.60 E-value=0.57 Score=50.91 Aligned_cols=77 Identities=21% Similarity=0.299 Sum_probs=55.1
Q ss_pred EEEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEec
Q 039172 74 IILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVTI 152 (477)
Q Consensus 74 ~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt~ 152 (477)
++||||..+..+.++|+|.+|+++.....+-.-.....|.+ +.....-.+.+...++++++++++..++|.+|+++.
T Consensus 6 ~~lgiD~GTts~Ka~l~d~~g~~~~~~~~~~~~~~~~~g~~--e~d~~~~~~~~~~~~~~~~~~~~~~~~~I~~Igis~ 82 (498)
T PRK00047 6 YILALDQGTTSSRAIIFDHDGNIVSVAQKEFTQIFPQPGWV--EHDPNEIWASQLSVIAEALAKAGISPDQIAAIGITN 82 (498)
T ss_pred EEEEEecCCCceEEEEECCCCCEEEEEeeeccccCCCCCeE--eeCHHHHHHHHHHHHHHHHHHcCCChhHeeEEEEec
Confidence 58999999999999999999999887543210011122222 222334566777889999999998888999999874
No 53
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=91.52 E-value=0.56 Score=51.67 Aligned_cols=77 Identities=13% Similarity=0.244 Sum_probs=55.0
Q ss_pred EEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEecC
Q 039172 75 ILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVTIG 153 (477)
Q Consensus 75 iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt~G 153 (477)
+||||-.+..+.++|+|.+|++++....+. ..+.+..|.+ |.....-.+.+...++++++++++..++|.+|+++..
T Consensus 2 ~lgID~GTts~Ka~l~d~~G~i~~~~~~~~-~~~~~~~g~~-eqdp~~~~~~~~~~i~~~~~~~~~~~~~I~~Igis~~ 78 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDSTGDILALAAQNI-KTWTPSSGLE-GQSSVYIWQAICNCVKQVLAESKVDPNSVKGIGFDAT 78 (541)
T ss_pred EEEEEecCcCEEEEEEcCCCCEEEEEEeee-eeccCCCCcc-cCCHHHHHHHHHHHHHHHHHHcCCChhheEEEEeccc
Confidence 799999999999999999999998764321 1111112221 2223334566778889999998988889999999974
No 54
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=91.00 E-value=0.9 Score=49.71 Aligned_cols=77 Identities=18% Similarity=0.248 Sum_probs=55.2
Q ss_pred EEEEEecccccceEEEEecCCeEEEEeeehhhhhh-h-hcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEe
Q 039172 74 IILGIETSCDDTAAAVVRGNGEILSQVVSSQADLL-A-KYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVT 151 (477)
Q Consensus 74 ~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h-~-~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt 151 (477)
++||||-.+..+.++|+|.+|++++....+-...+ . ..|.+ |.......+.+...++++++++++..++|.+|+++
T Consensus 4 ~~lgID~GTts~Ka~l~d~~G~~l~~~~~~~~~~~~~~~~g~~--Eqd~~~~w~~~~~~l~~~~~~~~~~~~~I~aI~~s 81 (520)
T PRK10939 4 YLMALDAGTGSIRAVIFDLNGNQIAVGQAEWRHLAVPDVPGSM--EFDLEKNWQLACQCIRQALQKAGIPASDIAAVSAT 81 (520)
T ss_pred EEEEEecCCCceEEEEECCCCCEEEEEeccccccCCCCCCCCe--eECHHHHHHHHHHHHHHHHHHcCCCccceEEEEEE
Confidence 69999999999999999999999887643210010 1 11222 22334456777888899998888888889999987
Q ss_pred c
Q 039172 152 I 152 (477)
Q Consensus 152 ~ 152 (477)
.
T Consensus 82 ~ 82 (520)
T PRK10939 82 S 82 (520)
T ss_pred C
Confidence 3
No 55
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=90.95 E-value=0.77 Score=49.86 Aligned_cols=76 Identities=21% Similarity=0.251 Sum_probs=54.2
Q ss_pred EEEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEe
Q 039172 74 IILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVT 151 (477)
Q Consensus 74 ~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt 151 (477)
++||||-+...+.++|+|.+|+++......- ..+.+..|-+ +.....-.+.+...++++++++++.+++|.+|+++
T Consensus 2 ~~lgiDiGtt~iKa~l~d~~g~~l~~~~~~~-~~~~~~~g~~-e~d~~~~~~~i~~~i~~~~~~~~~~~~~i~aIgis 77 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFDKDGNIVAIHQKEF-TQIFPKPGWV-EHDPMEIWESVLSCIAEALAKAGIKPDDIAAIGIT 77 (493)
T ss_pred eEEEEecCCCceEEEEECCCCCEEEEEeeec-cccCCCCCcE-eeCHHHHHHHHHHHHHHHHHHcCCChhheeEEEEe
Confidence 5899999999999999999999987654321 1111111211 22334456777888999999999888899999876
No 56
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=90.65 E-value=23 Score=39.16 Aligned_cols=69 Identities=19% Similarity=0.194 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCCCCCCcHHHHHHHHHHHHHHcC
Q 039172 343 LEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGVMVAWTGIEHFCVG 417 (477)
Q Consensus 343 L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~~~ctDNGamIa~ag~~~~~~g 417 (477)
+.+.+.++++.+......++.|++.||.+.-..+++.|.+.+. .++..+ ...|.+++.|+|-+-....+
T Consensus 311 ~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~---~~~~~~---~~p~~aVA~GAa~~a~~~~~ 379 (602)
T PF00012_consen 311 IIEPIEKALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFG---KKISKS---VNPDEAVARGAALYAAILSG 379 (602)
T ss_dssp THHHHHHHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTT---SEEB-S---S-TTTHHHHHHHHHHHHHHT
T ss_pred cccccccccccccccccccceeEEecCcccchhhhhhhhhccc---cccccc---cccccccccccccchhhhcc
Confidence 3344444444332213357899999999999999999998764 344433 24578888887654433334
No 57
>PLN02669 xylulokinase
Probab=90.60 E-value=1.5 Score=48.65 Aligned_cols=84 Identities=13% Similarity=0.137 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCC-CCCCCcHHHH
Q 039172 327 SRANIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPP-PSLCTDNGVM 405 (477)
Q Consensus 327 ~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp-~~~ctDNGam 405 (477)
.+.++++++.+.++-.+-..++.. . . ....++|.++||.+.|..+++.+.+.+ |..|+.+. ...|.=+++|
T Consensus 417 ~~~~~~RAvlEg~a~~~r~~~~~l-~---~-~~~~~~i~~~GGgs~s~~w~Qi~ADVl---g~pV~~~~~~ea~alGAA~ 488 (556)
T PLN02669 417 DPPSEVRAIIEGQFLSMRAHAERF-G---M-PVPPKRIIATGGASANQSILKLIASIF---GCDVYTVQRPDSASLGAAL 488 (556)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH-h---C-CCCCcEEEEEcChhcCHHHHHHHHHHc---CCCeEecCCCCchHHHHHH
Confidence 467888888777766554444332 2 1 234678999999999999999998876 55777664 3356677788
Q ss_pred HHHHHHHHHHcCC
Q 039172 406 VAWTGIEHFCVGR 418 (477)
Q Consensus 406 Ia~ag~~~~~~g~ 418 (477)
+|..|+++.+++.
T Consensus 489 ~A~~~~~~~~~~~ 501 (556)
T PLN02669 489 RAAHGWLCNEQGS 501 (556)
T ss_pred HHHHHHhhhhhcc
Confidence 8777777665543
No 58
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=90.38 E-value=1 Score=49.18 Aligned_cols=76 Identities=16% Similarity=0.185 Sum_probs=53.6
Q ss_pred EEEEEecccccceEEEEecCCeEEEEeeehhhhhhhh-cCCccchhcHHHHHHhHHHHHHHHHHHCCCCCC--CcCEEEE
Q 039172 74 IILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAK-YGGVAPKMAEEAHSLAIDPVVQEALHKANLTER--DLSAVAV 150 (477)
Q Consensus 74 ~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~-~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~--did~IAv 150 (477)
++||||..+..+.++|+|.+|++++....+. ..... .|++ |.....-.+.+..++++++++++.... +|.+|++
T Consensus 3 ~~lgiDiGTts~Ka~l~d~~G~~v~~~~~~~-~~~~~~~g~~--eqd~~~~~~~~~~~l~~~~~~~~~~~~~~~I~aIgi 79 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDEKGNVVSSHQIPH-EQITPHPGWL--EHDPEEILRNVYKCMNEAIKKLREKGPSFKIKAIGI 79 (504)
T ss_pred EEEEEecCCCceEEEEECCCCCEEEEEEEee-cccCCCCCeE--eeCHHHHHHHHHHHHHHHHHHcCCCCccCceEEEEe
Confidence 6899999999999999999999987654332 11222 2322 223334466677788888888877666 7999997
Q ss_pred ec
Q 039172 151 TI 152 (477)
Q Consensus 151 t~ 152 (477)
+.
T Consensus 80 s~ 81 (504)
T PTZ00294 80 TN 81 (504)
T ss_pred ec
Confidence 74
No 59
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=90.29 E-value=1.4 Score=47.58 Aligned_cols=80 Identities=21% Similarity=0.282 Sum_probs=57.6
Q ss_pred CcEEEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEe
Q 039172 72 DLIILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVT 151 (477)
Q Consensus 72 ~m~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt 151 (477)
+++||+||-.+..+-+.++|.+|++++....+-.. |-+..|.|=- ....-.++...++++++.++++++.+|.+|++|
T Consensus 4 ~~yIlAiDqGTTssRaivfd~~g~iva~~q~e~~Q-~yP~~GWVEh-Dp~eIw~~~~~~l~~a~~~~~i~~~~iaaIGIT 81 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDEDGNIVAIAQREFTQ-IYPQPGWVEH-DPLEIWASVRSVLKEALAKAGIKPGEIAAIGIT 81 (499)
T ss_pred ccEEEEEecCCcceeEEEECCCCCchhhhhhhhhh-hCCCCCcccc-CHHHHHHHHHHHHHHHHHHcCCCccceEEEEee
Confidence 57899999999999999999999998765322111 1122354421 223334556678899999999999999999999
Q ss_pred cC
Q 039172 152 IG 153 (477)
Q Consensus 152 ~G 153 (477)
+-
T Consensus 82 NQ 83 (499)
T COG0554 82 NQ 83 (499)
T ss_pred cc
Confidence 63
No 60
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=89.58 E-value=0.99 Score=48.49 Aligned_cols=80 Identities=20% Similarity=0.307 Sum_probs=58.0
Q ss_pred EEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEec-CC
Q 039172 76 LGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVTI-GP 154 (477)
Q Consensus 76 LgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt~-GP 154 (477)
||||-+...+.++|+|.+|+++.....+- +.+....|.. +.......+.+..+++++++++++..++|.+|+++. +|
T Consensus 1 lgIDiGtt~ik~~l~d~~g~i~~~~~~~~-~~~~~~~g~~-e~d~~~~~~~l~~~i~~~~~~~~~~~~~I~gIgvs~~~~ 78 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQGEVIASGSAPH-TVISPHPGWS-EQDPEDWWDATEEAIKELLEQASEMGQDIKGIGISGQMH 78 (481)
T ss_pred CceeecCcceEEEEECCCCCEEEEEeecc-cccCCCCCCe-eeCHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEecCCc
Confidence 58999999999999999999997765432 1111112221 233445567788899999999999888999999974 67
Q ss_pred Ccc
Q 039172 155 GLS 157 (477)
Q Consensus 155 G~~ 157 (477)
|..
T Consensus 79 g~v 81 (481)
T TIGR01312 79 GLV 81 (481)
T ss_pred eeE
Confidence 754
No 61
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=88.99 E-value=1.3 Score=48.72 Aligned_cols=77 Identities=14% Similarity=0.195 Sum_probs=54.3
Q ss_pred EEEEEecccccceEEEEe-cCCeEEEEeeehhhh-----hhhh------cCCccchhcHHHHHHhHHHHHHHHHHHCCCC
Q 039172 74 IILGIETSCDDTAAAVVR-GNGEILSQVVSSQAD-----LLAK------YGGVAPKMAEEAHSLAIDPVVQEALHKANLT 141 (477)
Q Consensus 74 ~iLgIeTS~ddtsvAlv~-~dg~il~~~~~sq~~-----~h~~------~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~ 141 (477)
++||||..+..+.++|+| .+|++++....+-.. .+.. .|.+ |.....-.+.+...++++++++++.
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~--Eqdp~~~w~~~~~~~~~~~~~~~~~ 79 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVATGEEIATAVEWYRHWVKGQFLPKTGAKLPNDQA--LQHPADYIEVLEAAIPTVLAELGVD 79 (536)
T ss_pred eEEEEecCCCceEEEEEECCCCcEeeeeeeccccccccccCCCccccCCCCcc--ccCHHHHHHHHHHHHHHHHHHcCCC
Confidence 589999999999999999 899998776432100 0111 1221 1223334566778888999998888
Q ss_pred CCCcCEEEEec
Q 039172 142 ERDLSAVAVTI 152 (477)
Q Consensus 142 ~~did~IAvt~ 152 (477)
.++|.+|+++.
T Consensus 80 ~~~I~aI~~s~ 90 (536)
T TIGR01234 80 PADVVGIGVDF 90 (536)
T ss_pred HHHEEEEEEec
Confidence 88899999985
No 62
>KOG2201 consensus Pantothenate kinase PanK and related proteins [Coenzyme transport and metabolism]
Probab=88.56 E-value=2.8 Score=43.40 Aligned_cols=171 Identities=18% Similarity=0.214 Sum_probs=94.4
Q ss_pred HHHHHHhhcCCCEEEeccHHHHHHHHHHhhh-------------------hcC----CcCceeeeeccceeeeeccCCce
Q 039172 166 KARKIAGQFNLPIVGVHHMEAHALVARQWLT-------------------MTR----MQNDFLDLFNNIHIGQKDTSGHN 222 (477)
Q Consensus 166 ~Ak~La~~~~~Pli~V~H~~AHa~sa~~~~~-------------------~~~----~~~P~l~llDgvyvG~~~SGGht 222 (477)
|..-+-..+++.+.-+..|.+.+...-+... ... ..+|++.+= +| || .
T Consensus 115 f~d~~~~~l~v~l~k~Dem~~LI~G~~f~l~~i~~E~fty~~~~~~~~~~~~~~~~d~~yPyLLVN----IG---SG--V 185 (371)
T KOG2201|consen 115 FEDLFREILDVKLDKEDEMDCLIKGLNFLLSNIPAECFTYENDEDEEVEFQTNFCLDSPYPYLLVN----IG---SG--V 185 (371)
T ss_pred HHHHHHHHhCceEeehhHHHHHHhhhHHHHhcCccceEEEecCCCcceecccCCccCCCCceEEEE----cC---CC--e
Confidence 5555666677777777777777654433100 001 137887654 32 33 4
Q ss_pred EEEEEccCCceeEecccccchhhhHHHHHHHHcCCCCCCCCh---hHHHHhhhcCCCcccc-ccccccCCCCceeecchH
Q 039172 223 LLVLAHNLGQYTQLGTTIDDAIGEAFDKTAKWLGLDMRRSGG---PAVEKLALEGDAESVK-FSTPMKQHKDCNFSYAGL 298 (477)
Q Consensus 223 ~lv~v~~~~~~~iLg~t~D~S~Ge~fDkvAr~LGl~~~~~gG---~~iE~LA~~g~~~~~~-fp~p~~~~~~~~fSFSGl 298 (477)
.++.|++.++|+++|.| |+|- .-++||+--.-|- -++-.+|.+||+..++ +-+-+.+ -+.+=-||
T Consensus 186 SIlkV~~~~~feRvgGs---SlGG-----GTf~GL~~LLTg~~sfdE~LelA~~Gd~~~vD~LV~DIYG---g~y~~fGL 254 (371)
T KOG2201|consen 186 SILKVDGPDNFERVGGS---SLGG-----GTFLGLGSLLTGCKSFDELLELASRGDNRNVDMLVRDIYG---GDYSRFGL 254 (371)
T ss_pred EEEEEecCCceeEeccc---ccCC-----cchhhhHhHhcCCCCHHHHHHHHhcCCCchhhhhhhhccC---ccHhhcCC
Confidence 57889999999999764 2321 1223332100010 1334489999986543 2222221 12332345
Q ss_pred HHH-----HHHHHHhhcCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEchhHhh
Q 039172 299 KTQ-----VRLAIESKNIDSRIPISSTSCQDRKSRANIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVSGGVASN 373 (477)
Q Consensus 299 kta-----v~~~i~~~~~~~~~~~~~~~~~~~~~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N 373 (477)
+.. +-+.+... + +....++|||.|+-.++.+.|-+.+..... ..++++|++.|=--.|
T Consensus 255 ~~~~iASSFGk~~~~e-K-----------~~~~s~eDia~SlL~mIsnNIGqiAyl~A~-----~~ni~rV~FgG~fiR~ 317 (371)
T KOG2201|consen 255 KGDLIASSFGKVIRKE-K-----------ELSVSKEDIARSLLRMISNNIGQIAYLCAL-----NENIKRVYFGGFFIRG 317 (371)
T ss_pred ChhHHHHHHHHHhhcc-c-----------ccccChHHHHHHHHHHHHhhHHHHHHHHHH-----HhCccEEEEeeeEEec
Confidence 432 22222111 1 123568999999999999998887654443 5789999987753333
No 63
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=88.18 E-value=50 Score=37.20 Aligned_cols=65 Identities=20% Similarity=0.170 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCCCCCCcHHHHHHHHHHHH
Q 039172 343 LEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGVMVAWTGIEH 413 (477)
Q Consensus 343 L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~~~ctDNGamIa~ag~~~ 413 (477)
+.+.+.++++.+.-....++.|++.||-+.-..+++.+.+.+.. +.+ .....|-+++.|+|-+-.
T Consensus 311 ~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~---~~~---~~~npdeaVA~GAAi~a~ 375 (616)
T PRK05183 311 TLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGR---TPL---TSIDPDKVVAIGAAIQAD 375 (616)
T ss_pred HHHHHHHHHHHcCCCcccCCEEEEECCcccChHHHHHHHHHhcc---CcC---cCCCchHHHHHHHHHHHH
Confidence 33444455543221123578999999999999999999987643 222 124568888888774433
No 64
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=88.06 E-value=6.9 Score=35.88 Aligned_cols=99 Identities=18% Similarity=0.290 Sum_probs=66.7
Q ss_pred EEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEecCCCc
Q 039172 77 GIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVTIGPGL 156 (477)
Q Consensus 77 gIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt~GPG~ 156 (477)
|||-+.+.+.++++|.+|+++......- | .....-.+.+...+++.+.+.+.. .|+++. ||.
T Consensus 1 gidig~~~i~~~l~d~~g~ii~~~~~~~-----------~-~~~~~~~~~l~~~i~~~~~~~~~~-----gIgi~~-pG~ 62 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLDGEIIYSESIPT-----------P-TSPEELLDALAELIERLLADYGRS-----GIGISV-PGI 62 (179)
T ss_dssp EEEEESSEEEEEEEETTSCEEEEEEEEH-----------H-SSHHHHHHHHHHHHHHHHHHHTCE-----EEEEEE-SSE
T ss_pred CEEECCCEEEEEEECCCCCEEEEEEEEC-----------C-CCHHHHHHHHHHHHHHHHhhcccc-----cEEEec-ccc
Confidence 6888899999999999999988765431 1 123344556777888888876642 666553 443
Q ss_pred chhh-----------HHHHHHHHHHHhhcCCCEEEeccHHHHHHHHHH
Q 039172 157 SLCL-----------RVGVQKARKIAGQFNLPIVGVHHMEAHALVARQ 193 (477)
Q Consensus 157 ~t~L-----------rvG~~~Ak~La~~~~~Pli~V~H~~AHa~sa~~ 193 (477)
+..- --.+.+++.|...+++|++-.|...+.+++-+.
T Consensus 63 v~~~~g~i~~~~~~~~~~~~l~~~l~~~~~~pv~i~Nd~~~~a~ae~~ 110 (179)
T PF00480_consen 63 VDSEKGRIISSPNPGWENIPLKEELEERFGVPVIIENDANAAALAEYW 110 (179)
T ss_dssp EETTTTEEEECSSGTGTTCEHHHHHHHHHTSEEEEEEHHHHHHHHHHH
T ss_pred CcCCCCeEEecCCCCcccCCHHHHhhcccceEEEEecCCCcceeehhh
Confidence 2110 012446778888899999999998888776554
No 65
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=87.54 E-value=2.5 Score=46.12 Aligned_cols=83 Identities=17% Similarity=0.286 Sum_probs=57.2
Q ss_pred CcEEEEEecccccceEEEEecC-CeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEE
Q 039172 72 DLIILGIETSCDDTAAAVVRGN-GEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAV 150 (477)
Q Consensus 72 ~m~iLgIeTS~ddtsvAlv~~d-g~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAv 150 (477)
++++||||.++..+.+.++|.+ +++++....+. ....+..|. .|.....-.+.+..+++++++++.+..++|.+|++
T Consensus 3 ~~~~lgIDiGTt~~Kavl~d~~~~~~~~~~~~~~-~~~~~~~g~-~e~d~~~~w~~~~~ai~~l~~~~~~~~~~I~aI~i 80 (502)
T COG1070 3 MKYVLGIDIGTTSVKAVLFDEDGGEVVATARFEN-PVSTPQPGW-AEQDPDELWQAILEALRQLLEESKIDPDAIAAIGI 80 (502)
T ss_pred ccEEEEEEcCCCcEEEEEEeCCCCeEEEEeeccc-cccCCCCCC-cccCHHHHHHHHHHHHHHHHHhcccChhhceEEEE
Confidence 4589999999999999999988 77776654321 111111121 12333444566778899999998888899999977
Q ss_pred e-cCCCc
Q 039172 151 T-IGPGL 156 (477)
Q Consensus 151 t-~GPG~ 156 (477)
+ .|.|+
T Consensus 81 s~~~~g~ 87 (502)
T COG1070 81 SGQGHGL 87 (502)
T ss_pred eccccce
Confidence 6 45554
No 66
>PRK04123 ribulokinase; Provisional
Probab=87.41 E-value=2.1 Score=47.09 Aligned_cols=78 Identities=15% Similarity=0.184 Sum_probs=52.7
Q ss_pred EEEEEecccccceEEEEec-CCeEEEEeeehhhhhhhhcCCccchhc-----HHHHHHhHHHHHHHHHHHCCCCCCCcCE
Q 039172 74 IILGIETSCDDTAAAVVRG-NGEILSQVVSSQADLLAKYGGVAPKMA-----EEAHSLAIDPVVQEALHKANLTERDLSA 147 (477)
Q Consensus 74 ~iLgIeTS~ddtsvAlv~~-dg~il~~~~~sq~~~h~~~gGv~P~~a-----~~~H~~~l~~~i~~~L~~agi~~~did~ 147 (477)
++||||.++..+.++|+|. +|++++....+- ......+...|... ...-.+.+...++++++++++...+|.+
T Consensus 4 ~~lgiD~GTts~Ka~l~d~~~g~~~~~~~~~~-~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~~~~~~~~~I~a 82 (548)
T PRK04123 4 YVIGLDFGTDSVRALLVDCATGEELATAVVEY-PHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLKEAGVDPAAVVG 82 (548)
T ss_pred EEEEEecCCCceEEEEEECCCCcEeEEEEeec-cccccccccCCCCCceeeCHHHHHHHHHHHHHHHHHHcCCChhhEEE
Confidence 5899999999999999994 999887764431 11000001112211 1222456667888899989988888999
Q ss_pred EEEec
Q 039172 148 VAVTI 152 (477)
Q Consensus 148 IAvt~ 152 (477)
|+++.
T Consensus 83 Igis~ 87 (548)
T PRK04123 83 IGVDF 87 (548)
T ss_pred EEEec
Confidence 99885
No 67
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=87.08 E-value=4 Score=43.84 Aligned_cols=83 Identities=17% Similarity=0.195 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCCCCCCcHHHHH
Q 039172 327 SRANIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGVMV 406 (477)
Q Consensus 327 ~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~~~ctDNGamI 406 (477)
.+.++++++.+.++-.+...++...+ .. ...+++|.++||.+.|..+++.+.+.+ |.+++++.. .+ +..+
T Consensus 360 ~~~~l~railEgia~~~~~~~~~l~~-~~--~~~~~~i~~~GG~s~s~~~~Q~~Adv~---g~pv~~~~~---~e-~~a~ 429 (481)
T TIGR01312 360 TRADLTRAVLEGVTFALRDSLDILRE-AG--GIPIQSIRLIGGGAKSPAWRQMLADIF---GTPVDVPEG---EE-GPAL 429 (481)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-hc--CCCcceEEEeccccCCHHHHHHHHHHh---CCceeecCC---Cc-chHH
Confidence 47889998888887766655543222 00 123688999999999999999888875 668887762 22 3445
Q ss_pred HHHHHHHHHcCCC
Q 039172 407 AWTGIEHFCVGRF 419 (477)
Q Consensus 407 a~ag~~~~~~g~~ 419 (477)
|+|-+-.+..|.+
T Consensus 430 GaA~~a~~~~g~~ 442 (481)
T TIGR01312 430 GAAILAAWALGEK 442 (481)
T ss_pred HHHHHHHHhcCCC
Confidence 5554444445543
No 68
>PRK15027 xylulokinase; Provisional
Probab=86.83 E-value=2.3 Score=46.05 Aligned_cols=83 Identities=14% Similarity=0.113 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCCCCCCcHHHHH
Q 039172 327 SRANIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGVMV 406 (477)
Q Consensus 327 ~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~~~ctDNGamI 406 (477)
.+.++++++.+.++-.+...++.. + +.....++|+++||.+.|..+++.+.+.+ |.+|.++.. .+++..+
T Consensus 357 ~~~~l~rAvlEgia~~~~~~~~~l-~---~~g~~~~~i~~~GGga~s~~w~Qi~Adv~---g~pv~~~~~---~~~~~a~ 426 (484)
T PRK15027 357 GPNELARAVLEGVGYALADGMDVV-H---ACGIKPQSVTLIGGGARSEYWRQMLADIS---GQQLDYRTG---GDVGPAL 426 (484)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH-H---HcCCCccEEEEeCcccCCHHHHHHHHHHh---CCeEEeecC---CCcchHH
Confidence 478999998888877666555432 2 11223678999999999999999888875 678866542 2333445
Q ss_pred HHHHHHHHHcCCC
Q 039172 407 AWTGIEHFCVGRF 419 (477)
Q Consensus 407 a~ag~~~~~~g~~ 419 (477)
|.|-+-.+..|..
T Consensus 427 GaA~lA~~~~G~~ 439 (484)
T PRK15027 427 GAARLAQIAANPE 439 (484)
T ss_pred HHHHHHHHhcCCc
Confidence 5444444445654
No 69
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=86.76 E-value=8.6 Score=37.91 Aligned_cols=102 Identities=13% Similarity=0.113 Sum_probs=62.6
Q ss_pred EEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEecCC
Q 039172 75 ILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVTIGP 154 (477)
Q Consensus 75 iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt~GP 154 (477)
+||||-+.+.+.++++|.+|+++.....+- |.... +.+...+.+++++.......+.+|+++. |
T Consensus 2 ~lgidiggt~i~~~l~d~~g~i~~~~~~~~-----------~~~~~----~~~~~~i~~~i~~~~~~~~~~~gIgv~~-p 65 (256)
T PRK13311 2 YYGFDMGGTKIELGVFDENLQRIWHKRVPT-----------PREDY----PQLLQILRDLTEEADTYCGVQGSVGIGI-P 65 (256)
T ss_pred EEEEEECCCcEEEEEECCCCCEEEEEEecC-----------CCcCH----HHHHHHHHHHHHHHHhhcCCCceEEEEe-c
Confidence 699999999999999998898886554320 11111 2233445555554432222344666664 5
Q ss_pred Ccc---hhh--------HHHHHHHHHHHhhcCCCEEEeccHHHHHHHHH
Q 039172 155 GLS---LCL--------RVGVQKARKIAGQFNLPIVGVHHMEAHALVAR 192 (477)
Q Consensus 155 G~~---t~L--------rvG~~~Ak~La~~~~~Pli~V~H~~AHa~sa~ 192 (477)
|.. ++. --+..+++.|...+++|++--|--.+.|++-+
T Consensus 66 G~vd~~~g~i~~~~~~~w~~~~l~~~l~~~~~~pV~leNDanaaAlaE~ 114 (256)
T PRK13311 66 GLPNADDGTVFTANVPSAMGQPLQADLSRLIQREVRIDNDANCFALSEA 114 (256)
T ss_pred CcEECCCCEEEccCCCcccCCChHHHHHHHHCCCEEEEchhhHHHHHHH
Confidence 532 110 02456778888889999988787777665543
No 70
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=86.74 E-value=1.1 Score=44.31 Aligned_cols=48 Identities=21% Similarity=0.354 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCC
Q 039172 340 VLHLEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPP 395 (477)
Q Consensus 340 ~~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp 395 (477)
.+.+.+.++++++ +.+.+.|+++||.+....|.+.+.+.+ |++++.+.
T Consensus 179 ~~~i~~~i~~~l~-----~~~~~~v~LtGG~a~ipgl~e~l~~~l---g~~v~~~~ 226 (239)
T TIGR02529 179 YQKMASIVKRHIE-----GQGVKDLYLVGGACSFSGFADVFEKQL---GLNVIKPQ 226 (239)
T ss_pred HHHHHHHHHHHHH-----hCCCCEEEEECchhcchhHHHHHHHHh---CCCcccCC
Confidence 3444555566665 456789999999999999999998876 56666653
No 71
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=86.59 E-value=60 Score=36.41 Aligned_cols=64 Identities=20% Similarity=0.159 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCCCCCCcHHHHHHHHHHH
Q 039172 343 LEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGVMVAWTGIE 412 (477)
Q Consensus 343 L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~~~ctDNGamIa~ag~~ 412 (477)
+.+.+.++++...-....++.|++.||-+....+++.+.+.+.. +++. ..-.|-+++.|+|-+-
T Consensus 295 i~~~i~~~L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~~---~~~~---~~npdeaVA~GAai~a 358 (599)
T TIGR01991 295 TLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQ---EPLT---DIDPDQVVALGAAIQA 358 (599)
T ss_pred HHHHHHHHHHHcCCChhhCCEEEEECCcCCChHHHHHHHHHhCC---CCCC---CCCCcHHHHHHHHHHH
Confidence 33444455543221123578999999999999999999987643 2222 2345788888876543
No 72
>PLN02669 xylulokinase
Probab=86.46 E-value=2 Score=47.65 Aligned_cols=79 Identities=25% Similarity=0.366 Sum_probs=52.1
Q ss_pred CcEEEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcC---Ccc--chh-cHH-----HHHHhHHHHHHHHHHHCCC
Q 039172 72 DLIILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYG---GVA--PKM-AEE-----AHSLAIDPVVQEALHKANL 140 (477)
Q Consensus 72 ~m~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~g---Gv~--P~~-a~~-----~H~~~l~~~i~~~L~~agi 140 (477)
..++||||.++..+.++|+|.+|++++....+-...+..|+ |+. |+. ... .-.+.+..+++++. ++++
T Consensus 7 ~~~~LGiD~GT~s~Ka~l~d~~g~vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~l~~l~-~~~~ 85 (556)
T PLN02669 7 DSLFLGFDSSTQSLKATVLDSNLRIVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLLLQKLA-KEKF 85 (556)
T ss_pred CCeEEEEecccCCeEEEEEcCCCCEEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHHHHHHH-HcCC
Confidence 34699999999999999999999999876543211113333 552 221 000 12255566666655 5678
Q ss_pred CCCCcCEEEEe
Q 039172 141 TERDLSAVAVT 151 (477)
Q Consensus 141 ~~~did~IAvt 151 (477)
..++|.+|+++
T Consensus 86 ~~~~I~aIs~s 96 (556)
T PLN02669 86 PFHKVVAISGS 96 (556)
T ss_pred ChhhEEEEEec
Confidence 88889999988
No 73
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=86.17 E-value=20 Score=40.38 Aligned_cols=96 Identities=15% Similarity=0.143 Sum_probs=62.9
Q ss_pred EEEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEecC
Q 039172 74 IILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVTIG 153 (477)
Q Consensus 74 ~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt~G 153 (477)
++||||-....+-+++++++|+++..... |... .+.+..++++.+++.+. .++++|++..
T Consensus 19 ~~L~iDIGGT~ir~al~~~~g~i~~~~~~-------------~t~~----~~~~~~~i~~~l~~~~~--~~~~~igig~- 78 (638)
T PRK14101 19 PRLLADVGGTNARFALETGPGEITQIRVY-------------PGAD----YPTLTDAIRKYLKDVKI--GRVNHAAIAI- 78 (638)
T ss_pred CEEEEEcCchhheeeeecCCCcccceeEE-------------ecCC----CCCHHHHHHHHHHhcCC--CCcceEEEEE-
Confidence 48999999999999999878877544321 1111 14567788888887653 3688887764
Q ss_pred CCcchh-------hHHHHHHHHHHHhhcCCC-EEEeccHHHHHHH
Q 039172 154 PGLSLC-------LRVGVQKARKIAGQFNLP-IVGVHHMEAHALV 190 (477)
Q Consensus 154 PG~~t~-------LrvG~~~Ak~La~~~~~P-li~V~H~~AHa~s 190 (477)
||...+ +---... +.|...+++| +.-+|=..|.+++
T Consensus 79 pGpVd~~~~~~~nl~w~~~~-~~l~~~~g~~~v~l~ND~~aaA~g 122 (638)
T PRK14101 79 ANPVDGDQVRMTNHDWSFSI-EATRRALGFDTLLVVNDFTALAMA 122 (638)
T ss_pred ecCccCCeeeecCCCcEecH-HHHHHHcCCCeEEEEchHHHHHcC
Confidence 443221 1000122 5677788986 6678888887776
No 74
>PRK00047 glpK glycerol kinase; Provisional
Probab=85.45 E-value=4.9 Score=43.74 Aligned_cols=83 Identities=12% Similarity=0.167 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCCCCCCcHHHHH
Q 039172 327 SRANIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGVMV 406 (477)
Q Consensus 327 ~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~~~ctDNGamI 406 (477)
.+.++++++.+.++-.+...++...+.. ....+.|.++||.+.|..+++.+.+.+ |.+|..+. ...+..+
T Consensus 373 ~~~~l~rAvlEgia~~~r~~~e~l~~~~---g~~~~~i~~~GGga~s~~w~Qi~ADvl---g~pV~~~~----~~e~~a~ 442 (498)
T PRK00047 373 TKEHIIRATLESIAYQTRDVLDAMQADS---GIRLKELRVDGGAVANNFLMQFQADIL---GVPVERPV----VAETTAL 442 (498)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCceEEEecCcccCHHHHHHHHHhh---CCeeEecC----cccchHH
Confidence 4688999888888776666554332110 223688999999999999999888875 67887765 2234456
Q ss_pred HHHHHHHHHcCCC
Q 039172 407 AWTGIEHFCVGRF 419 (477)
Q Consensus 407 a~ag~~~~~~g~~ 419 (477)
|.|-+-.+..|.+
T Consensus 443 GaA~~A~~~~G~~ 455 (498)
T PRK00047 443 GAAYLAGLAVGFW 455 (498)
T ss_pred HHHHHHhhhcCcC
Confidence 6655555555654
No 75
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=85.44 E-value=2.9 Score=45.51 Aligned_cols=79 Identities=14% Similarity=0.130 Sum_probs=53.9
Q ss_pred EEEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEec-
Q 039172 74 IILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVTI- 152 (477)
Q Consensus 74 ~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt~- 152 (477)
++||||-.+..+.++|+|.+|+++.....+-.....+.|.. +.......+.+...+++++++.+.. ++|.+|+++.
T Consensus 1 ~~lgiDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~--e~d~~~~~~~~~~~i~~~~~~~~~~-~~I~~Igis~~ 77 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEENGKIVAKSSIGYPLYTPASGMA--EENPEEIFEAVLVTIREVSINLEDE-DEILFVSFSTQ 77 (505)
T ss_pred CEEEEeccccceEEEEEcCCCCEEEEEEeecccccCCCCCe--eeCHHHHHHHHHHHHHHHHHhCCCc-CceEEEEEecc
Confidence 37999999999999999999999887654211001111221 2233445667778888988887766 7899999874
Q ss_pred CCC
Q 039172 153 GPG 155 (477)
Q Consensus 153 GPG 155 (477)
+.+
T Consensus 78 ~~~ 80 (505)
T TIGR01314 78 MHS 80 (505)
T ss_pred cce
Confidence 444
No 76
>PRK10331 L-fuculokinase; Provisional
Probab=85.03 E-value=4.7 Score=43.52 Aligned_cols=64 Identities=9% Similarity=0.040 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCC
Q 039172 327 SRANIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPP 396 (477)
Q Consensus 327 ~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~ 396 (477)
.+.++++++.+.++-.+.+.++...+ .. ...+++|.++||.+.|..+++.+.+.+ |.+|.++..
T Consensus 359 ~~~~l~rAvlEgia~~~~~~~~~l~~-~~--~~~~~~i~~~GGga~s~~w~Qi~Advl---g~pV~~~~~ 422 (470)
T PRK10331 359 TRGHFYRAALEGLTAQLKRNLQVLEK-IG--HFKASELLLVGGGSRNALWNQIKANML---DIPIKVLDD 422 (470)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-hc--CCCCceEEEEcccccCHHHHHHHHHhc---CCeeEecCc
Confidence 57899988888877666555443221 10 124688999999999999999888875 678887763
No 77
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=84.69 E-value=5.7 Score=43.32 Aligned_cols=83 Identities=19% Similarity=0.220 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCCCCCCcHHHHH
Q 039172 327 SRANIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGVMV 406 (477)
Q Consensus 327 ~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~~~ctDNGamI 406 (477)
.+.++++++.+.++-.+...++...+.. ....+.|.++||.+.|..+++.+.+.+ |.+|+++...- +..+
T Consensus 376 ~~~~i~rAvlEgia~~~r~~~~~l~~~~---g~~~~~i~~~GG~a~s~~w~Qi~Adv~---g~pV~~~~~~e----~~al 445 (504)
T PTZ00294 376 TRAHIVRAALEAIALQTNDVIESMEKDA---GIELNSLRVDGGLTKNKLLMQFQADIL---GKDIVVPEMAE----TTAL 445 (504)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhh---CCCcceEEEecccccCHHHHHHHHHHh---CCceEecCccc----chHH
Confidence 4789999888888776665554332200 123678999999999999999888875 67888776322 2344
Q ss_pred HHHHHHHHHcCCC
Q 039172 407 AWTGIEHFCVGRF 419 (477)
Q Consensus 407 a~ag~~~~~~g~~ 419 (477)
|.|-+-.+..|.+
T Consensus 446 GaAl~aa~a~G~~ 458 (504)
T PTZ00294 446 GAALLAGLAVGVW 458 (504)
T ss_pred HHHHHHHhhcCcc
Confidence 5444444444554
No 78
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=84.63 E-value=3.4 Score=44.60 Aligned_cols=83 Identities=11% Similarity=0.108 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCCCCCCcHHHHH
Q 039172 327 SRANIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGVMV 406 (477)
Q Consensus 327 ~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~~~ctDNGamI 406 (477)
.+.++++++.+.++-.+...++...+ .. ....+.|.++||-+.|..+++.+.+.+ |.+|.++.. ..+.++
T Consensus 363 ~~~~l~rAvlEgia~~~r~~~e~l~~-~~--~~~~~~i~~~GGga~s~~w~Qi~Adv~---g~pV~~~~~----~e~~~l 432 (465)
T TIGR02628 363 TRGHIYRAALEGLTAQLKRNLQMLEQ-IG--QFKASELLLVGGGSKNTLWNQIRANML---DIPVKVVDD----AETTVA 432 (465)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-hc--CCCcceEEEecCccCCHHHHHHhhhhc---CCeeEeccC----CcchHH
Confidence 47899999888877666554443222 00 124688999999999999999887764 678887763 233455
Q ss_pred HHHHHHHHHcCCC
Q 039172 407 AWTGIEHFCVGRF 419 (477)
Q Consensus 407 a~ag~~~~~~g~~ 419 (477)
|+|-+-.+..|..
T Consensus 433 GaA~~a~~a~G~~ 445 (465)
T TIGR02628 433 GAAMFGFYGVGEY 445 (465)
T ss_pred HHHHHHHHhcCcc
Confidence 6555444455543
No 79
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=84.44 E-value=5.4 Score=43.45 Aligned_cols=83 Identities=12% Similarity=0.160 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCCCCCCcHHHHH
Q 039172 327 SRANIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGVMV 406 (477)
Q Consensus 327 ~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~~~ctDNGamI 406 (477)
.+.++++++.+.++-.+...+....+.. ...++.|+++||.+.|..+++.+.+.+ |.+|.++... + +..+
T Consensus 371 ~~~~l~rAvlEgia~~~~~~~~~~~~~~---g~~~~~i~~~GGga~s~~w~Qi~Adv~---g~pv~~~~~~---e-~~a~ 440 (505)
T TIGR01314 371 KKEHMIRAALEGVIYNLYTVALALVEVM---GDPLNMIQATGGFASSEVWRQMMSDIF---EQEIVVPESY---E-SSCL 440 (505)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCcEEEEecCcccCHHHHHHHHHHc---CCeeEecCCC---C-cchH
Confidence 4789999988888776665544332211 224688999999999999999888875 6788877632 2 3344
Q ss_pred HHHHHHHHHcCCC
Q 039172 407 AWTGIEHFCVGRF 419 (477)
Q Consensus 407 a~ag~~~~~~g~~ 419 (477)
|.|-+-.+..|..
T Consensus 441 GaA~la~~~~G~~ 453 (505)
T TIGR01314 441 GACILGLKALGLI 453 (505)
T ss_pred HHHHHHHHhcCcc
Confidence 5444444445654
No 80
>PRK15027 xylulokinase; Provisional
Probab=84.38 E-value=6.9 Score=42.39 Aligned_cols=75 Identities=12% Similarity=0.151 Sum_probs=47.5
Q ss_pred EEEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEec
Q 039172 74 IILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVTI 152 (477)
Q Consensus 74 ~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt~ 152 (477)
++||||.++..+.++|+|.+|++++....+- ..+....|. .|.....-.+.+..++++++++. ..++|.+|+++.
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G~vva~~~~~~-~~~~~~~g~-~eqd~~~~w~~~~~~~~~l~~~~--~~~~I~aI~is~ 75 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNEQGEVVASQTEKL-TVSRPHPLW-SEQDPEQWWQATDRAMKALGDQH--SLQDVKALGIAG 75 (484)
T ss_pred CEEEEEecccceEEEEEcCCCCEEEEEeecc-cccCCCCCc-cccCHHHHHHHHHHHHHHHHHhC--CccceeEEEEec
Confidence 3789999999999999998888887654321 111122221 22233334556666777777655 346788898873
No 81
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=84.18 E-value=5.2 Score=43.81 Aligned_cols=78 Identities=15% Similarity=0.147 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCCCC-CCcHHHH
Q 039172 327 SRANIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPPSL-CTDNGVM 405 (477)
Q Consensus 327 ~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~~~-ctDNGam 405 (477)
.+.++++++.+.++-.+...++...+.. ...++.|.++||.+.|..+++.+.+.+ |.+|..+...- +.=+++|
T Consensus 379 ~~~~~~RAvlEgia~~~~~~l~~l~~~~---g~~~~~i~~~GGga~s~~w~Qi~ADvl---g~pV~~~~~~e~~alGaA~ 452 (520)
T PRK10939 379 NKATLFRALEENAAIVSACNLQQIAAFS---GVFPSSLVFAGGGSKGKLWSQILADVT---GLPVKVPVVKEATALGCAI 452 (520)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCcEEEEeCCcccCHHHHHHHHHhc---CCeeEEecccCchHHHHHH
Confidence 4688999888888766554443322100 224678999999999999999888875 67888887322 2334444
Q ss_pred HHHHH
Q 039172 406 VAWTG 410 (477)
Q Consensus 406 Ia~ag 410 (477)
+|+.+
T Consensus 453 lA~~~ 457 (520)
T PRK10939 453 AAGVG 457 (520)
T ss_pred HHHHH
Confidence 44443
No 82
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=83.93 E-value=3.9 Score=44.85 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=47.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCCC
Q 039172 325 RKSRANIAASFQRVAVLHLEERCERAIEWALKIE-PSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPPS 397 (477)
Q Consensus 325 ~~~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~-~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~~ 397 (477)
....++||.++-+++ +-.++..++...+.. .++++|.+.||.+.|..|.+...+.+ |.++..|+..
T Consensus 382 ~ts~~hia~A~leai----~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~---g~pv~~p~~~ 448 (516)
T KOG2517|consen 382 DTSKEHLARAALEAI----AFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADIL---GLPVVRPQDV 448 (516)
T ss_pred CCCHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHh---CCccccccch
Confidence 345899999555544 445555454443323 46889999999999999999887765 7889988853
No 83
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=83.62 E-value=4.8 Score=43.21 Aligned_cols=81 Identities=15% Similarity=0.248 Sum_probs=53.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCCCCCCcHHHH
Q 039172 327 SRANIAASFQRVAVLHLEERCERAIEWALKI-EPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGVM 405 (477)
Q Consensus 327 ~~~dIAasfQ~av~~~L~~~~~ral~~~~~~-~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~~~ctDNGam 405 (477)
.+.++.+++.+.++-.+...++. ..+. ...+++|.++||-+.|..+++.+.+.+ |.+|..++ ..+..
T Consensus 357 ~~~~l~RAv~Egva~~~r~~~e~----l~~~~~~~~~~i~~~GGga~s~~w~Qi~ADvl---g~pV~~~~-----~e~~a 424 (454)
T TIGR02627 357 SDAELARCIFDSLALLYRQVLLE----LAELRGKPISQLHIVGGGSQNAFLNQLCADAC---GIRVIAGP-----VEAST 424 (454)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH----HHHhhCCCcCEEEEECChhhhHHHHHHHHHHh---CCceEcCC-----chHHH
Confidence 47888888888776655443333 2221 224688999999999999999888875 67775432 22455
Q ss_pred HHHHHHHHHHcCCC
Q 039172 406 VAWTGIEHFCVGRF 419 (477)
Q Consensus 406 Ia~ag~~~~~~g~~ 419 (477)
+|.|-+-.+..|..
T Consensus 425 ~GaA~~a~~~~G~~ 438 (454)
T TIGR02627 425 LGNIGVQLMALDEI 438 (454)
T ss_pred HHHHHHHHHhcCCc
Confidence 66665555556654
No 84
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=83.09 E-value=10 Score=34.29 Aligned_cols=91 Identities=16% Similarity=0.180 Sum_probs=53.9
Q ss_pred CcEEEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEe
Q 039172 72 DLIILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVT 151 (477)
Q Consensus 72 ~m~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt 151 (477)
+|.+||||-...-+++|+.|..+.+.... . +++.. .+ ......+.+++++. +++.|+|.
T Consensus 3 ~~~iLalD~G~kriGvAv~d~~~~~a~pl-~-----------~i~~~---~~-~~~~~~l~~~i~~~-----~i~~iVvG 61 (138)
T PRK00109 3 SGRILGLDVGTKRIGVAVSDPLGGTAQPL-E-----------TIKRN---NG-TPDWDRLEKLIKEW-----QPDGLVVG 61 (138)
T ss_pred CCcEEEEEeCCCEEEEEEecCCCCEEcCE-E-----------EEEcC---CC-chHHHHHHHHHHHh-----CCCEEEEe
Confidence 57799999999999999998655443221 1 11111 01 11133455555554 46888887
Q ss_pred c--C-CCcchh-hHHHHHHHHHHHhhcCCCEEEecc
Q 039172 152 I--G-PGLSLC-LRVGVQKARKIAGQFNLPIVGVHH 183 (477)
Q Consensus 152 ~--G-PG~~t~-LrvG~~~Ak~La~~~~~Pli~V~H 183 (477)
. . -|..+. -+.-..|++.|...+++|++.++.
T Consensus 62 lP~~~~G~~~~~~~~v~~f~~~L~~~~~~~v~~~DE 97 (138)
T PRK00109 62 LPLNMDGTEGPRTERARKFANRLEGRFGLPVVLVDE 97 (138)
T ss_pred ccCCCCCCcCHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 2 1 122221 123346888888888999988863
No 85
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=82.97 E-value=6.9 Score=42.41 Aligned_cols=82 Identities=15% Similarity=0.236 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCCCCCCcHHHHH
Q 039172 327 SRANIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGVMV 406 (477)
Q Consensus 327 ~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~~~ctDNGamI 406 (477)
.+.++++++.+.++-.+...++...+.. ...++.|.++||.+.|..+++.+.+.+ |.+|..++ . + ++.+
T Consensus 345 ~~~~l~RAvlEgva~~~r~~l~~l~~~~---g~~~~~i~~~GGga~s~~w~Qi~ADvl---g~pV~~~~---~-e-a~al 413 (471)
T PRK10640 345 SDAELARCIFDSLALLYADVLHELAQLR---GEPFSQLHIVGGGCQNALLNQLCADAC---GIRVIAGP---V-E-ASTL 413 (471)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCcceEEEECChhhhHHHHHHHHHHh---CCCeeeCC---h-h-HHHH
Confidence 5789999988888766654443322100 123678999999999999999888876 66775543 2 3 4567
Q ss_pred HHHHHHHHHcCCC
Q 039172 407 AWTGIEHFCVGRF 419 (477)
Q Consensus 407 a~ag~~~~~~g~~ 419 (477)
|.+.+-.+..|..
T Consensus 414 Gaa~~a~~a~G~~ 426 (471)
T PRK10640 414 GNIGIQLMTLDEL 426 (471)
T ss_pred HHHHHHHHHcCCc
Confidence 7777666666654
No 86
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=82.95 E-value=7.2 Score=35.81 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=17.6
Q ss_pred EEEEEecccccceEEEEecC
Q 039172 74 IILGIETSCDDTAAAVVRGN 93 (477)
Q Consensus 74 ~iLgIeTS~ddtsvAlv~~d 93 (477)
.|||||-|...|+.|+++.+
T Consensus 1 rILGIDPGl~~~G~av~~~~ 20 (154)
T cd00529 1 RILGIDPGSRNTGYGVIEQE 20 (154)
T ss_pred CEEEEccCcCceEEEEEEee
Confidence 38999999999999999743
No 87
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=82.68 E-value=6 Score=42.98 Aligned_cols=63 Identities=21% Similarity=0.249 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCC
Q 039172 327 SRANIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPP 395 (477)
Q Consensus 327 ~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp 395 (477)
.+.++++++.+.++-.+...++...+.. ...++.|.++||-+.|..+++.+.+.+ |.+|+++.
T Consensus 369 ~~~~l~rAvlEgia~~~~~~~~~l~~~~---g~~~~~i~~~GGga~s~~w~Qi~ADv~---g~pv~~~~ 431 (493)
T TIGR01311 369 TKAHIARAALEAIAFQTRDVLEAMEKDA---GVEITKLRVDGGMTNNNLLMQFQADIL---GVPVVRPK 431 (493)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCceEEEecccccCHHHHHHHHHhc---CCeeEecC
Confidence 4789999888888766665554332200 223688999999999999999988875 67888765
No 88
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=82.41 E-value=69 Score=33.63 Aligned_cols=28 Identities=18% Similarity=0.417 Sum_probs=24.6
Q ss_pred CCCcEEEEEchhHhhHHHHHHHHHHHHc
Q 039172 359 PSIKHLVVSGGVASNKYVRARLDRAVKN 386 (477)
Q Consensus 359 ~~~~~lvlsGGVA~N~~Lr~~L~~~~~~ 386 (477)
+..+.|++||-++-|..+++.+.+.+++
T Consensus 259 ~~~~~IilSGr~~~~~~~~~~l~~~l~~ 286 (343)
T PF07318_consen 259 PDPDEIILSGRFSRIPEFRKKLEDRLED 286 (343)
T ss_pred CCCCEEEEeccccccHHHHHHHHHHHHh
Confidence 4567899999999999999999988865
No 89
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=82.33 E-value=4.6 Score=40.44 Aligned_cols=67 Identities=13% Similarity=0.249 Sum_probs=47.3
Q ss_pred CcEEEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEe
Q 039172 72 DLIILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVT 151 (477)
Q Consensus 72 ~m~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt 151 (477)
.|+.+|||-.+.-..+|++++++.+.+..-.. + .++-.+ ..+++++=+++++..+|||.||.|
T Consensus 2 ~m~fVGiDHGTsgi~~ai~d~e~~~~Fklgra--e-------------~~~~~e--k~~L~~l~de~~i~l~eidlialt 64 (332)
T COG4020 2 TMMFVGIDHGTSGIKFAIYDGEKDPEFKLGRA--E-------------LRKVAE--KSLLRELEDEARIALEEIDLIALT 64 (332)
T ss_pred ceEEEeecCCCcceEEEEEcCCCCceEEechh--h-------------hhhhhH--HHHHHHhhHhhCCccccceEEEEe
Confidence 37789999999999999999777666644211 0 111111 235566667889999999999999
Q ss_pred cCCC
Q 039172 152 IGPG 155 (477)
Q Consensus 152 ~GPG 155 (477)
++-|
T Consensus 65 YsMG 68 (332)
T COG4020 65 YSMG 68 (332)
T ss_pred eccc
Confidence 8655
No 90
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=81.42 E-value=8.5 Score=42.09 Aligned_cols=63 Identities=24% Similarity=0.254 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCC
Q 039172 327 SRANIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPP 395 (477)
Q Consensus 327 ~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp 395 (477)
...++++++.+.++-.+...++...+.. ....+.|.++||-+.|...++.+.+.+ |.++.+|+
T Consensus 371 ~~~~l~ravlEgva~~l~~~~~~l~~~~---g~~~~~i~~~GGgars~~w~Qi~Ad~~---g~~v~~~~ 433 (502)
T COG1070 371 TRAHLARAVLEGVAFALADGLEALEELG---GKPPSRVRVVGGGARSPLWLQILADAL---GLPVVVPE 433 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCccEEEEECCcccCHHHHHHHHHHc---CCeeEecC
Confidence 3577887777777666554443322210 234568999999999999999998875 78898886
No 91
>PRK10331 L-fuculokinase; Provisional
Probab=80.75 E-value=6.6 Score=42.38 Aligned_cols=79 Identities=19% Similarity=0.270 Sum_probs=49.6
Q ss_pred EEEEEecccccceEEEEecCCeEEEEeeehhh-hhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEec
Q 039172 74 IILGIETSCDDTAAAVVRGNGEILSQVVSSQA-DLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVTI 152 (477)
Q Consensus 74 ~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~-~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt~ 152 (477)
++||||-.+..+.++|+|.+|++++....+.. .......|.+ |.....-.+.+...+++++++. ...+|.+|++|.
T Consensus 3 ~~lgID~GTt~~Ka~l~d~~G~~~~~~~~~~~~~~~~~~~g~~-eqd~~~~w~~~~~~~~~~~~~~--~~~~I~~I~is~ 79 (470)
T PRK10331 3 VILVLDCGATNVRAIAVDRQGKIVARASTPNASDIAAENSDWH-QWSLDAILQRFADCCRQINSEL--TECHIRGITVTT 79 (470)
T ss_pred eEEEEecCCCceEEEEEcCCCcEEEEEecccccccCCCCCCCc-ccCHHHHHHHHHHHHHHHHHhC--CccceEEEEEec
Confidence 68999999999999999999999876543210 0111111211 1122223556666777777754 345799999886
Q ss_pred -CCC
Q 039172 153 -GPG 155 (477)
Q Consensus 153 -GPG 155 (477)
+.+
T Consensus 80 ~~~~ 83 (470)
T PRK10331 80 FGVD 83 (470)
T ss_pred cccc
Confidence 443
No 92
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=79.72 E-value=10 Score=40.81 Aligned_cols=76 Identities=20% Similarity=0.247 Sum_probs=47.5
Q ss_pred EEEEEecccccceEEEEecCCeEEEEeeehhh-hhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEec
Q 039172 74 IILGIETSCDDTAAAVVRGNGEILSQVVSSQA-DLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVTI 152 (477)
Q Consensus 74 ~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~-~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt~ 152 (477)
++||||-.+..+.++|+|.+|++++....+-. ....+..|.+ |.....-.+.+...+++++++ +..++|.+|+++.
T Consensus 2 ~ilgiD~GTss~K~~l~d~~g~~va~~~~~~~~~~~~~~~g~~-eqd~~~~w~~~~~~~~~l~~~--~~~~~I~aI~~s~ 78 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINRQGKIVASASTPNATKQAIENNDYH-IWDLEAIWQKLADCCQQINSE--LTEKHIRGIAVTT 78 (465)
T ss_pred eEEEEecCCCcEEEEEEcCCCCEEEEEecccccCCCCCCCCce-eeCHHHHHHHHHHHHHHHHhh--cChhceEEEEEec
Confidence 48999999999999999999999976543210 0111222321 122223344555566666543 4556799999875
No 93
>PLN02295 glycerol kinase
Probab=79.61 E-value=11 Score=41.19 Aligned_cols=86 Identities=15% Similarity=0.165 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCCCCCCcHHH
Q 039172 327 SRANIAASFQRVAVLHLEERCERAIEWALK--IEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGV 404 (477)
Q Consensus 327 ~~~dIAasfQ~av~~~L~~~~~ral~~~~~--~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~~~ctDNGa 404 (477)
.+.++++++.+.++-.+-+.++...+.... ....++.|.++||.+.|..+++.+.+.+ |.+|.++.. . .+.
T Consensus 377 ~~~~l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~---g~pV~~~~~---~-e~~ 449 (512)
T PLN02295 377 NKAHIARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATANNLLMQIQADLL---GSPVVRPAD---I-ETT 449 (512)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccchhCHHHHHHHHHhc---CCceEecCc---c-ccH
Confidence 478999988888877665554433221000 0113678999999999999999888875 678877652 2 234
Q ss_pred HHHHHHHHHHHcCCC
Q 039172 405 MVAWTGIEHFCVGRF 419 (477)
Q Consensus 405 mIa~ag~~~~~~g~~ 419 (477)
++|.|-+-.+..|..
T Consensus 450 alGaA~~A~~~~G~~ 464 (512)
T PLN02295 450 ALGAAYAAGLAVGLW 464 (512)
T ss_pred HHHHHHHHHhhcCcC
Confidence 455554444444543
No 94
>PRK04123 ribulokinase; Provisional
Probab=79.13 E-value=10 Score=41.78 Aligned_cols=81 Identities=9% Similarity=0.121 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEchh-HhhHHHHHHHHHHHHcCCCEEEcCCCCCCCcHHHH
Q 039172 327 SRANIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVSGGV-ASNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGVM 405 (477)
Q Consensus 327 ~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~~~lvlsGGV-A~N~~Lr~~L~~~~~~~g~~l~~Pp~~~ctDNGam 405 (477)
.+.++++++.+.++-.+.+.++. ++ +....+++|.++||. +.|..+++.+.+.+ |.+|.++.. . .+++
T Consensus 409 ~~~~l~RAvlEgia~~~~~~~e~-l~---~~g~~~~~i~~~GGg~s~s~~w~Qi~ADv~---g~pV~~~~~---~-e~~a 477 (548)
T PRK04123 409 DAPDIYRALIEATAFGTRAIMEC-FE---DQGVPVEEVIAAGGIARKNPVLMQIYADVL---NRPIQVVAS---D-QCPA 477 (548)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HH---HcCCCcceEEEeCCCcccCHHHHHHHHHhc---CCceEecCc---c-ccch
Confidence 46889988888887665544333 22 112246789999999 99999999888775 678877652 2 2334
Q ss_pred HHHHHHHHHHcCC
Q 039172 406 VAWTGIEHFCVGR 418 (477)
Q Consensus 406 Ia~ag~~~~~~g~ 418 (477)
+|.|-+-.+..|.
T Consensus 478 lGaA~lA~~~~G~ 490 (548)
T PRK04123 478 LGAAIFAAVAAGA 490 (548)
T ss_pred HHHHHHHHHHhcc
Confidence 4544443344443
No 95
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=78.09 E-value=6.1 Score=36.18 Aligned_cols=20 Identities=40% Similarity=0.685 Sum_probs=16.0
Q ss_pred EEEEecccccceEEEEecCC
Q 039172 75 ILGIETSCDDTAAAVVRGNG 94 (477)
Q Consensus 75 iLgIeTS~ddtsvAlv~~dg 94 (477)
|||||-+...|+.|+++.++
T Consensus 1 ILGIDPgl~~tG~avi~~~~ 20 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDG 20 (149)
T ss_dssp EEEEE--SSEEEEEEEEEET
T ss_pred CEEECCCCCCeeEEEEEeeC
Confidence 79999999999999998644
No 96
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=77.02 E-value=15 Score=40.46 Aligned_cols=82 Identities=9% Similarity=0.105 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEchh-HhhHHHHHHHHHHHHcCCCEEEcCCCCCCCcHHHH
Q 039172 327 SRANIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVSGGV-ASNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGVM 405 (477)
Q Consensus 327 ~~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~~~lvlsGGV-A~N~~Lr~~L~~~~~~~g~~l~~Pp~~~ctDNGam 405 (477)
.+.++++++.+.++-.+...++. ++ +....+++|.++||. +.|..+++.+.+.+ |.+|.++. ..+ +.+
T Consensus 406 ~~~~~~RAvlEgia~~~~~~l~~-l~---~~g~~~~~i~~~GGg~a~s~~w~Qi~Adv~---g~pV~~~~---~~e-~~a 474 (536)
T TIGR01234 406 DAPLLYRALIEATAFGTRMIMET-FT---DSGVPVEELMAAGGIARKNPVIMQIYADVT---NRPLQIVA---SDQ-APA 474 (536)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HH---hcCCCcceEEEeCCccccCHHHHHHHHHhh---CCeeEecc---CCc-chh
Confidence 46888888888777555444332 22 212346889999999 89999999887775 67888876 234 334
Q ss_pred HHHHHHHHHHcCCC
Q 039172 406 VAWTGIEHFCVGRF 419 (477)
Q Consensus 406 Ia~ag~~~~~~g~~ 419 (477)
+|.|-+-.+..|..
T Consensus 475 ~GaA~lA~~~~G~~ 488 (536)
T TIGR01234 475 LGAAIFAAVAAGVY 488 (536)
T ss_pred HHHHHHHHHHcCCc
Confidence 56555444555654
No 97
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=76.00 E-value=19 Score=39.70 Aligned_cols=79 Identities=15% Similarity=0.184 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCCCCCCcHHHHHHH
Q 039172 329 ANIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGVMVAW 408 (477)
Q Consensus 329 ~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~~~ctDNGamIa~ 408 (477)
.++.+++.+.++-.+-+.++.. + +....+++|.++||.+.|..+++.+.+.+ |.+|.++. +.+ ++++|.
T Consensus 416 ~~~~rAvlEgiaf~~r~~~e~l-~---~~g~~~~~i~~~GGga~s~~w~Qi~ADvl---g~pV~~~~---~~e-~~alGa 484 (541)
T TIGR01315 416 ALLYYATMEFIAYGTRQIVEAM-N---TAGHTIKSIFMSGGQCQNPLLMQLIADAC---DMPVLIPY---VNE-AVLHGA 484 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-H---HcCCCccEEEEecCcccCHHHHHHHHHHH---CCeeEecC---hhH-HHHHHH
Confidence 6777888877766555444332 2 21234678999999999999999888876 67888886 334 334554
Q ss_pred HHHHHHHcCC
Q 039172 409 TGIEHFCVGR 418 (477)
Q Consensus 409 ag~~~~~~g~ 418 (477)
|-+-.+..|.
T Consensus 485 A~lA~~~~G~ 494 (541)
T TIGR01315 485 AMLGAKAAGT 494 (541)
T ss_pred HHHHHHhcCc
Confidence 4443344454
No 98
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=74.80 E-value=8 Score=34.92 Aligned_cols=90 Identities=17% Similarity=0.233 Sum_probs=54.5
Q ss_pred cEEEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEec
Q 039172 73 LIILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVTI 152 (477)
Q Consensus 73 m~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt~ 152 (477)
|.+||||-...-+++|+-|..+.+ +.-... ++.... +.....+.+++++. +++.|+|..
T Consensus 1 mriL~lD~G~kriGiAvsd~~~~~-a~pl~~-----------i~~~~~----~~~~~~l~~li~~~-----~i~~iVvGl 59 (135)
T PF03652_consen 1 MRILGLDYGTKRIGIAVSDPLGII-ASPLET-----------IPRRNR----EKDIEELKKLIEEY-----QIDGIVVGL 59 (135)
T ss_dssp -EEEEEEECSSEEEEEEEETTTSS-EEEEEE-----------EEECCC----CCCHHHHHHHHHHC-----CECEEEEEE
T ss_pred CeEEEEEeCCCeEEEEEecCCCCe-EeeeEE-----------EECCCC----chHHHHHHHHHHHh-----CCCEEEEeC
Confidence 789999999999999999966543 221110 000001 22334555666653 578898875
Q ss_pred CC---Ccchh-hHHHHHHHHHHHhhc-CCCEEEecc
Q 039172 153 GP---GLSLC-LRVGVQKARKIAGQF-NLPIVGVHH 183 (477)
Q Consensus 153 GP---G~~t~-LrvG~~~Ak~La~~~-~~Pli~V~H 183 (477)
-- |..+. -+.-..|++.|+..+ ++|++-++.
T Consensus 60 P~~~~G~~~~~~~~v~~f~~~L~~~~~~ipV~~~DE 95 (135)
T PF03652_consen 60 PLNMDGSESEQARRVRKFAEELKKRFPGIPVILVDE 95 (135)
T ss_dssp EBBCTSSC-CCHHHHHHHHHHHHHHH-TSEEEEEEC
T ss_pred CcccCCCccHHHHHHHHHHHHHHHhcCCCcEEEECC
Confidence 21 22221 233467888898887 999888763
No 99
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=74.79 E-value=16 Score=40.35 Aligned_cols=84 Identities=17% Similarity=0.191 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCCCCCCcHHHHHH
Q 039172 328 RANIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGVMVA 407 (477)
Q Consensus 328 ~~dIAasfQ~av~~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~~~ctDNGamIa 407 (477)
.+++|.-+-.. .+.+.--++..++...+....+++|.++||-.-|..+.+.+.+. .|..+.+|. .|++.++|
T Consensus 400 ~~~l~~lY~a~-l~a~A~GtR~Iie~~~~~g~~Id~l~~sGG~~KN~llmql~aDv---tg~~v~i~~----s~~a~llG 471 (544)
T COG1069 400 PESLALLYRAL-LEATAFGTRAIIETFEDQGIAIDTLFASGGIRKNPLLMQLYADV---TGRPVVIPA----SDQAVLLG 471 (544)
T ss_pred cHHHHHHHHHH-HHHHHHhHHHHHHHHHHcCCeeeEEEecCCcccCHHHHHHHHHh---cCCeEEeec----ccchhhhH
Confidence 55666544433 33444455555665555566789999999999999999877665 578899885 67778887
Q ss_pred HHHHHHHHcCCC
Q 039172 408 WTGIEHFCVGRF 419 (477)
Q Consensus 408 ~ag~~~~~~g~~ 419 (477)
.|.......|.+
T Consensus 472 sAm~~avAag~~ 483 (544)
T COG1069 472 AAMFAAVAAGVH 483 (544)
T ss_pred HHHHHHHHhccC
Confidence 776666666665
No 100
>PRK07157 acetate kinase; Provisional
Probab=74.01 E-value=13 Score=39.82 Aligned_cols=77 Identities=19% Similarity=0.258 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHH-hhcCCCCcEEEEEchhHhhHH-HHHHHHHHHHcCCCEE-----------------Ec-CC---
Q 039172 339 AVLHLEERCERAIEWA-LKIEPSIKHLVVSGGVASNKY-VRARLDRAVKNNSLQL-----------------VC-PP--- 395 (477)
Q Consensus 339 v~~~L~~~~~ral~~~-~~~~~~~~~lvlsGGVA~N~~-Lr~~L~~~~~~~g~~l-----------------~~-Pp--- 395 (477)
+.++++.++.+.+-.. -.+..+++.||++||++-|+. +|+++.+.++..|+++ +- +.
T Consensus 298 A~d~f~yri~k~Ig~~~a~L~G~vDaiVFTgGIGen~~~vr~~i~~~l~~lGi~lD~~~N~~~~~~~~~~~~Is~~~S~v 377 (400)
T PRK07157 298 ALDLYAQKIVDYLANYINKIGKKIDAIVFTAGVGENSAFVRELVINKINIPNIKLDKEKNLKKIGEYGPIELISTPDSDI 377 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCEEEECCccccCcHHHHHHHHhhccccceEECHHHcccccccCccCceecCCCCCc
Confidence 3455555555544322 122335999999999999999 9999998877655432 11 11
Q ss_pred --CCCCCcHHHHHHHHHHHHHH
Q 039172 396 --PSLCTDNGVMVAWTGIEHFC 415 (477)
Q Consensus 396 --~~~ctDNGamIa~ag~~~~~ 415 (477)
...+||--.|||.-.+..++
T Consensus 378 ~v~VipTnEE~~IA~~t~~l~~ 399 (400)
T PRK07157 378 PVYVIRTNEELLIAKNAIKLYE 399 (400)
T ss_pred eEEEECCCHHHHHHHHHHHHHh
Confidence 12467888888887766553
No 101
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=72.67 E-value=1.7e+02 Score=32.94 Aligned_cols=64 Identities=17% Similarity=0.247 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCCCCCCcHHHHHHHHHHH
Q 039172 341 LHLEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGVMVAWTGIE 412 (477)
Q Consensus 341 ~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~~~ctDNGamIa~ag~~ 412 (477)
+.+.+.++++++.+. ...++.|++.||.+.-..+++.+.+.+. .+++.+ .-.|-+++.|+|-+-
T Consensus 291 ~~~~~~i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f~---~~~~~~---~npdeaVA~GAAi~a 354 (595)
T PRK01433 291 ERTINIAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFK---VDILSD---IDPDKAVVWGAALQA 354 (595)
T ss_pred HHHHHHHHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHhC---CCceec---CCchHHHHHHHHHHH
Confidence 334455555555332 2458999999999999999999998763 343332 235888888876543
No 102
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=72.23 E-value=8.3 Score=42.41 Aligned_cols=77 Identities=17% Similarity=0.276 Sum_probs=56.6
Q ss_pred EEEEEecccccceEEEEecC-CeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEec
Q 039172 74 IILGIETSCDDTAAAVVRGN-GEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVTI 152 (477)
Q Consensus 74 ~iLgIeTS~ddtsvAlv~~d-g~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt~ 152 (477)
+++|+|-.+...=++|+|-. |++++..+..- . |-+-+.-.++-.++.-.+.+-..|+++++++|+.+.+|-+|.|+.
T Consensus 4 ~~iGvDvGTgSaRA~v~D~~~G~~la~a~~p~-~-~~~~~~~~~~q~s~d~~~av~~aVr~~v~~agv~~~~V~gIGvDa 81 (544)
T COG1069 4 YVIGVDVGTGSARAGVFDCQTGTLLARAVRPY-P-MWQPGSNLAEQHSRDYWEAVCAAVRDVVAKAGVDPADVVGIGVDA 81 (544)
T ss_pred EEEEEeecCCceeEEEEEcCCCcchhhcccce-e-ccccCccccccCHHHHHHHHHHHHHHHHHHcCCChhHeeEEEEcc
Confidence 68999999999999999964 88887664321 1 112234444555556666677888999999999999998888763
No 103
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=72.05 E-value=3.8 Score=35.68 Aligned_cols=63 Identities=21% Similarity=0.301 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHCCCCCCCcCEEEEecCCCcchhhHHHHH-HHHHHHhhc---CCCEEEeccHHHHHH
Q 039172 126 AIDPVVQEALHKANLTERDLSAVAVTIGPGLSLCLRVGVQ-KARKIAGQF---NLPIVGVHHMEAHAL 189 (477)
Q Consensus 126 ~l~~~i~~~L~~agi~~~did~IAvt~GPG~~t~LrvG~~-~Ak~La~~~---~~Pli~V~H~~AHa~ 189 (477)
.+...|+++|+++|++++|||.|-+. |+|...+=++-+. +.+.+.... .+|+..+--..+|..
T Consensus 26 ~~~~~i~~al~~agi~~~~I~~i~~h-g~Gt~~~D~~E~~ai~~~~~~~~~~~~~~v~s~K~~~Gh~~ 92 (119)
T PF02801_consen 26 ALARAIRRALADAGISPEDIDYIEAH-GTGTPLGDAAEAEAIARVFGDSARQQPVPVGSVKSNIGHTE 92 (119)
T ss_dssp HHHHHHHHHHHHHTS-GGGEEEEE-----SSHHHHHHHHHHHHHHHGGGGGTSTSEEE-THHHH-B-G
T ss_pred HHHHHHHHHHhhhccccccceeeeee-ccccccchhhhhhhhhhhhcccccccccceecccccccccc
Confidence 44567999999999999999988644 7776544333332 223333322 267766666667754
No 104
>PRK13410 molecular chaperone DnaK; Provisional
Probab=69.21 E-value=2.1e+02 Score=32.66 Aligned_cols=70 Identities=19% Similarity=0.134 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCCCCCCcHHHHHHHHHHHHHHcC
Q 039172 342 HLEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGVMVAWTGIEHFCVG 417 (477)
Q Consensus 342 ~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~~~ctDNGamIa~ag~~~~~~g 417 (477)
.+.+.++++++.+.-....+..|++.||-+.-..+++.+.+.+. .++. ...-.|-++++|+|-+-....+
T Consensus 310 r~~~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg---~~~~---~~~npdeaVA~GAAi~aa~ls~ 379 (668)
T PRK13410 310 RLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIP---REPN---QNVNPDEVVAVGAAIQAGILAG 379 (668)
T ss_pred HHHHHHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHcC---CCcc---cCCCCchHHHHhHHHHHHhhcc
Confidence 33444455554222112346899999999999999999988753 2222 2234678888887754433333
No 105
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=68.76 E-value=22 Score=38.06 Aligned_cols=77 Identities=17% Similarity=0.240 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHH-HhhcCCCCcEEEEEchhH-hhHHHHHHHHHHHHcCCCEEE---------------c-CC-----
Q 039172 339 AVLHLEERCERAIEW-ALKIEPSIKHLVVSGGVA-SNKYVRARLDRAVKNNSLQLV---------------C-PP----- 395 (477)
Q Consensus 339 v~~~L~~~~~ral~~-~~~~~~~~~~lvlsGGVA-~N~~Lr~~L~~~~~~~g~~l~---------------~-Pp----- 395 (477)
+.+.++.++.+.+-. +-.+..+++.||++||++ -+..+|+++.+.++..|+++= - +.
T Consensus 301 A~d~f~yri~k~Iga~~a~L~g~vDaiVfTGGIgE~s~~lr~~I~~~l~~lGi~lD~~~N~~~~~~~~~~Is~~~s~v~v 380 (402)
T PRK00180 301 ALDVFVYRLAKYIGSYAAALNGRLDAIVFTAGIGENSALVREKVLEGLEFLGIELDPEKNLAARFGKEGDISTPDSKVKV 380 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCccccCCHHHHHHHHhhhhhcCeeeCHHHccccccCCCceecCCCCCceE
Confidence 344555555444332 222236799999999999 888999999988876664331 1 11
Q ss_pred CCCCCcHHHHHHHHHHHHHH
Q 039172 396 PSLCTDNGVMVAWTGIEHFC 415 (477)
Q Consensus 396 ~~~ctDNGamIa~ag~~~~~ 415 (477)
....||--.|||...+..++
T Consensus 381 ~Vi~tnEE~~IA~~~~~ll~ 400 (402)
T PRK00180 381 LVIPTNEELMIARDTLRLLG 400 (402)
T ss_pred EEECCCHHHHHHHHHHHHHh
Confidence 11357777888887766543
No 106
>PRK12440 acetate kinase; Reviewed
Probab=68.63 E-value=9.9 Score=40.53 Aligned_cols=50 Identities=18% Similarity=0.293 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHH-hhcCCCCcEEEEEchhHhhHH-HHHHHHHHHHcCCC
Q 039172 339 AVLHLEERCERAIEWA-LKIEPSIKHLVVSGGVASNKY-VRARLDRAVKNNSL 389 (477)
Q Consensus 339 v~~~L~~~~~ral~~~-~~~~~~~~~lvlsGGVA~N~~-Lr~~L~~~~~~~g~ 389 (477)
+.++.+.++.+.+-.+ -.+ .+++.||++||++-|+. +|+++.+.++..|+
T Consensus 299 A~d~f~yri~k~Ig~~~a~l-~gvDaiVFTgGIGen~~~vr~~i~~~l~~lg~ 350 (397)
T PRK12440 299 AFEVFTYRVAKYIASYLAAL-DSLDGIIFTGGIGENSLPIRREILKNLKLLGF 350 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCEEEECCccccCcHHHHHHHHhhhhhhce
Confidence 3455555555544322 222 37999999999999999 99999888765444
No 107
>PRK07058 acetate kinase; Provisional
Probab=66.24 E-value=31 Score=36.89 Aligned_cols=75 Identities=13% Similarity=0.144 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcEEEEEchhH-hhHHHHHHHHHHHHcCCCEE-----------EcCCC------CCCCc
Q 039172 340 VLHLEERCERAIEWALKIEPSIKHLVVSGGVA-SNKYVRARLDRAVKNNSLQL-----------VCPPP------SLCTD 401 (477)
Q Consensus 340 ~~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA-~N~~Lr~~L~~~~~~~g~~l-----------~~Pp~------~~ctD 401 (477)
.+..+.++.+.+-.+...-.+++.||++||++ -+..+|+++.+.++..|+++ +-.+. ..+||
T Consensus 298 ~d~f~yri~k~IGa~~a~Lg~vDaiVfTGGIgEns~~vr~~i~~~l~~lgi~lD~~~N~~~~~~Is~~~S~v~v~VipTn 377 (396)
T PRK07058 298 LDLFALRIAGEIARLAATLGGLDAVVFTAGIGEHQPAIRAAVCERLAWLGVELDPAANAANAFTISSRTSRVAAFVIPTD 377 (396)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEECCccccCcHHHHHHHHhhhhhhceeeCHhHcCCCCceecCCCCCceEEEECCC
Confidence 34445555444332111124799999999999 66779999999887655432 11111 24688
Q ss_pred HHHHHHHHHHHHH
Q 039172 402 NGVMVAWTGIEHF 414 (477)
Q Consensus 402 NGamIa~ag~~~~ 414 (477)
-=.|||.-.+..+
T Consensus 378 EEl~IA~~~~~ll 390 (396)
T PRK07058 378 EEQVIADEAFSVL 390 (396)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888777665
No 108
>PLN02192 3-ketoacyl-CoA synthase
Probab=66.17 E-value=15 Score=40.51 Aligned_cols=67 Identities=9% Similarity=0.023 Sum_probs=43.2
Q ss_pred cHHHHHHh-HHHHHHHHHHHCCCCCCCcCEEEEecCCCcchhhHHHHHHHHHHHhhcCCCEEEeccHHH
Q 039172 119 AEEAHSLA-IDPVVQEALHKANLTERDLSAVAVTIGPGLSLCLRVGVQKARKIAGQFNLPIVGVHHMEA 186 (477)
Q Consensus 119 a~~~H~~~-l~~~i~~~L~~agi~~~did~IAvt~GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~H~~A 186 (477)
++|+..+. +..+++++|+++|++++|||.|.|+..|+..+. -.....++.+....+++-+.++.+-+
T Consensus 171 ~~~~Ea~~~~~~Aa~~aL~kaGi~p~DIDiLIv~~S~~~~~P-Slaa~I~n~lGlr~~i~afdLsgmGC 238 (511)
T PLN02192 171 EARKEAETVMFGAIDQLLAKTSVKPKDIGILIVNCSLFNPTP-SLSAMVINHYKLRGNILSYNLGGMGC 238 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCc-hHHHHHHHHhCCCCCceEEEcccchh
Confidence 34444444 457999999999999999999998887764332 22333444454434556666665433
No 109
>PRK13318 pantothenate kinase; Reviewed
Probab=65.08 E-value=20 Score=35.54 Aligned_cols=68 Identities=13% Similarity=0.231 Sum_probs=45.4
Q ss_pred EEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEec-C
Q 039172 75 ILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVTI-G 153 (477)
Q Consensus 75 iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt~-G 153 (477)
+|+||-....+.+++++ +++++...... ... ......+...+++++++.++...+++.|+++. .
T Consensus 2 iL~IDIGnT~iK~al~d-~g~i~~~~~~~-------------t~~-~~~~~~~~~~l~~l~~~~~~~~~~i~~I~issVv 66 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYE-GGKLVAHWRIS-------------TDS-RRTADEYGVWLKQLLGLSGLDPEDITGIIISSVV 66 (258)
T ss_pred EEEEEECCCcEEEEEEE-CCEEEEEEEEe-------------CCC-CCCHHHHHHHHHHHHHHcCCCcccCceEEEEEec
Confidence 79999999999999999 67776543211 000 00112344567788888888777898888763 4
Q ss_pred CCcc
Q 039172 154 PGLS 157 (477)
Q Consensus 154 PG~~ 157 (477)
|+..
T Consensus 67 p~~~ 70 (258)
T PRK13318 67 PSVM 70 (258)
T ss_pred CchH
Confidence 7653
No 110
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=62.85 E-value=2.6e+02 Score=31.45 Aligned_cols=70 Identities=16% Similarity=0.113 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCCCCCCcHHHHHHHHHHHHHHcC
Q 039172 342 HLEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGVMVAWTGIEHFCVG 417 (477)
Q Consensus 342 ~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~~~ctDNGamIa~ag~~~~~~g 417 (477)
.+.+.+.++++.+.-....++.|++.||.+.-..+++.+.+.+. .++.. ....|-+++.|+|-+-....+
T Consensus 308 ~~~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~fg---~~~~~---~~npdeava~GAa~~aa~l~~ 377 (627)
T PRK00290 308 RTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFG---KEPNK---GVNPDEVVAIGAAIQGGVLAG 377 (627)
T ss_pred HHHHHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHhC---CCCCc---CcCChHHHHHhHHHHHHHhcC
Confidence 34444555554332112357899999999999999999998763 33222 245688888887755433333
No 111
>PRK13321 pantothenate kinase; Reviewed
Probab=61.97 E-value=22 Score=35.30 Aligned_cols=62 Identities=16% Similarity=0.210 Sum_probs=41.6
Q ss_pred EEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEe
Q 039172 75 ILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVT 151 (477)
Q Consensus 75 iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt 151 (477)
+|+||-....+.+++++ +++++...... ... ..-...+...+.+++++.++..++++.|+++
T Consensus 2 iL~IDIGnT~ik~gl~~-~~~i~~~~~~~-------------T~~-~~~~~~~~~~l~~l~~~~~~~~~~i~~i~vs 63 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFD-GDRLLRSFRLP-------------TDK-SRTSDELGILLLSLFRHAGLDPEDIRAVVIS 63 (256)
T ss_pred EEEEEECCCeEEEEEEE-CCEEEEEEEEe-------------cCC-CCCHHHHHHHHHHHHHHcCCChhhCCeEEEE
Confidence 69999999999999999 44776542211 100 0011345566777888878777788888765
No 112
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=61.90 E-value=31 Score=32.10 Aligned_cols=92 Identities=24% Similarity=0.244 Sum_probs=49.1
Q ss_pred EEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccch-hcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEE---
Q 039172 75 ILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPK-MAEEAHSLAIDPVVQEALHKANLTERDLSAVAV--- 150 (477)
Q Consensus 75 iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~-~a~~~H~~~l~~~i~~~L~~agi~~~did~IAv--- 150 (477)
|||||-+...|+.+|++.++.-+.-+ .||=|... ..-......|...+++++++.. +|.+|+
T Consensus 1 ILGIDPGl~~tG~gvi~~~~~~~~~v---------~~G~I~t~~~~~~~RL~~I~~~l~~~i~~y~-----P~~~aiE~~ 66 (156)
T TIGR00228 1 ILGIDPGSRVTGYGVIRQVGRQLSYL---------GSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ-----PNYFAIEQV 66 (156)
T ss_pred CEeECcccccccEEEEEecCCeEEEE---------EeeEEECCCCCHHHHHHHHHHHHHHHHHHhC-----CCEEEEeHH
Confidence 69999999999999998544322111 12322211 1122233455667778887643 455553
Q ss_pred --ecCCCcchhhHHHHHH--HHHHHhhcCCCEEEec
Q 039172 151 --TIGPGLSLCLRVGVQK--ARKIAGQFNLPIVGVH 182 (477)
Q Consensus 151 --t~GPG~~t~LrvG~~~--Ak~La~~~~~Pli~V~ 182 (477)
...|. +++.+|-.. +...+...++|++...
T Consensus 67 F~~~N~~--sa~~lg~arGvilla~~~~~ipv~Ey~ 100 (156)
T TIGR00228 67 FMAKNAD--SALKLGQARGVAIVAAVNQELPVFEYA 100 (156)
T ss_pred hhccCHH--HHHHHHHHHHHHHHHHHHcCCCEEEEC
Confidence 34443 444444332 1223445677776533
No 113
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=59.73 E-value=26 Score=34.79 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=35.5
Q ss_pred CCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCC
Q 039172 359 PSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPP 396 (477)
Q Consensus 359 ~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~ 396 (477)
.|++-+++|=|-.+-..|++++++.++..|-++|+|+-
T Consensus 83 ~g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pSG 120 (255)
T COG1712 83 AGIDVIVMSVGALADEGLRERLRELAKCGGARVYLPSG 120 (255)
T ss_pred cCCCEEEEechhccChHHHHHHHHHHhcCCcEEEecCc
Confidence 57899999999999999999999999999999999983
No 114
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=59.59 E-value=83 Score=28.82 Aligned_cols=90 Identities=18% Similarity=0.223 Sum_probs=53.2
Q ss_pred CcEEEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHH-HHHHhHHHHHHHHHHHCCCCCCCcCEEEE
Q 039172 72 DLIILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEE-AHSLAIDPVVQEALHKANLTERDLSAVAV 150 (477)
Q Consensus 72 ~m~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~-~H~~~l~~~i~~~L~~agi~~~did~IAv 150 (477)
.|.+||+|-.....++|+-+..+ .++.-... +...... .+. ..+.+++++. +++.|+|
T Consensus 1 ~~~ilalD~G~KrIGvA~sd~~~-~~A~pl~~-----------i~~~~~~~~~~----~~l~~li~~~-----~~~~vVV 59 (141)
T COG0816 1 GMRILALDVGTKRIGVAVSDILG-SLASPLET-----------IKRKNGKPQDF----NALLKLVKEY-----QVDTVVV 59 (141)
T ss_pred CceEEEEecCCceEEEEEecCCC-ccccchhh-----------heeccccHhhH----HHHHHHHHHh-----CCCEEEE
Confidence 47899999999999999998544 22322111 0011111 123 3444555543 6788888
Q ss_pred ecCCC---cchhhHH--HHHHHHHHHhhcCCCEEEecc
Q 039172 151 TIGPG---LSLCLRV--GVQKARKIAGQFNLPIVGVHH 183 (477)
Q Consensus 151 t~GPG---~~t~Lrv--G~~~Ak~La~~~~~Pli~V~H 183 (477)
.. |= .-.+.+. .-.|++.|...+++|++-+..
T Consensus 60 Gl-P~~m~g~~~~~~~~~~~f~~~L~~r~~lpv~l~DE 96 (141)
T COG0816 60 GL-PLNMDGTEGPRAELARKFAERLKKRFNLPVVLWDE 96 (141)
T ss_pred ec-CcCCCCCcchhHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 74 21 1112233 456888888888899887754
No 115
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=59.48 E-value=19 Score=38.47 Aligned_cols=82 Identities=18% Similarity=0.222 Sum_probs=53.4
Q ss_pred HHHHHHHHCCCCCCCcCEEEEecCCCcchhhHHHHHHH-HHHHhhcCCCEEEeccHHHHHHHHHHhhhhcCCcCceeeee
Q 039172 130 VVQEALHKANLTERDLSAVAVTIGPGLSLCLRVGVQKA-RKIAGQFNLPIVGVHHMEAHALVARQWLTMTRMQNDFLDLF 208 (477)
Q Consensus 130 ~i~~~L~~agi~~~did~IAvt~GPG~~t~LrvG~~~A-k~La~~~~~Pli~V~H~~AHa~sa~~~~~~~~~~~P~l~ll 208 (477)
+..+++++... .+++|.|..|=| ||--|+.++ |. ..+++|+++|....||++..-+.. ......|-+..+
T Consensus 204 ig~EIl~ql~~---~~~AI~vpVGGG---GLiaGIat~vk~--~~p~vkIIGVEt~~a~~f~~sl~~-g~~V~lp~i~s~ 274 (457)
T KOG1250|consen 204 IGLEILEQLKE---PDGAIVVPVGGG---GLIAGIATGVKR--VGPHVKIIGVETEGAHSFNASLKA-GKPVTLPKITSL 274 (457)
T ss_pred HHHHHHHhhcC---CCCeEEEecCCc---hhHHHHHHHHHH--hCCCCceEEEeecCcHHHHHHHhc-CCeeecccccch
Confidence 44566665443 256999998865 666666654 44 356999999999999998876621 123456777777
Q ss_pred -ccceeeeeccCCce
Q 039172 209 -NNIHIGQKDTSGHN 222 (477)
Q Consensus 209 -DgvyvG~~~SGGht 222 (477)
|| +|.-.-|.+|
T Consensus 275 Adg--laV~~Vg~~t 287 (457)
T KOG1250|consen 275 ADG--LAVKTVGENT 287 (457)
T ss_pred hcc--cccchhhHHH
Confidence 77 4332244443
No 116
>PF00108 Thiolase_N: Thiolase, N-terminal domain; InterPro: IPR020616 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2.3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 1PXT_B 1AFW_B 1WL4_A 1WL5_A 4E1L_B 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2WUA_B ....
Probab=59.03 E-value=11 Score=37.67 Aligned_cols=71 Identities=21% Similarity=0.197 Sum_probs=40.8
Q ss_pred hcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEecCCCcchhhHHHHHHHHHHHhhcCCCEEEecc
Q 039172 110 KYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVTIGPGLSLCLRVGVQKARKIAGQFNLPIVGVHH 183 (477)
Q Consensus 110 ~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt~GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~H 183 (477)
+++|....... .+....+++++|+++++++++||.|.+..--+...+..++-..+.......++|.+.|+.
T Consensus 16 ~~~G~l~~~~~---~~L~~~a~~~al~~~~i~~~~Id~v~~G~~~~~~~g~~~ar~~~l~aGl~~~vp~~~V~~ 86 (264)
T PF00108_consen 16 KFGGSLADVSP---EDLAAEAVKAALERAGIDPEDIDAVIVGNVLQEGEGQNIARQAALAAGLPESVPATTVNR 86 (264)
T ss_dssp CTTSTTTTS-H---HHHHHHHHHHHHHHHTSHGGGEEEEEEE-SSSCTTTCHHHHHHHHHTTS-TTSEEEEEE-
T ss_pred cCCCccCCCCH---HHHHHHHHHHHHHhcccchhhhhhcCcccccccccchhhhhhhhhhcccccccceeeehh
Confidence 45565443322 234457899999999999999999998864332223333322222222223578888875
No 117
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=59.02 E-value=3.2e+02 Score=31.16 Aligned_cols=64 Identities=16% Similarity=0.204 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCCCCCCcHHHHHHHHHHH
Q 039172 343 LEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGVMVAWTGIE 412 (477)
Q Consensus 343 L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~~~ctDNGamIa~ag~~ 412 (477)
+.+.+.++++.+.-....++.|++.||-+.-..+++.+.+.+.. ++. ...-.|-+++.|+|-+-
T Consensus 350 ~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~---~~~---~~~npdeaVA~GAAi~a 413 (663)
T PTZ00400 350 TIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGK---EPS---KGVNPDEAVAMGAAIQA 413 (663)
T ss_pred HHHHHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCC---Ccc---cCCCCccceeeccHHHH
Confidence 34444455543221123478999999999999999999988643 221 12234666777766543
No 118
>PRK08304 stage V sporulation protein AD; Validated
Probab=58.58 E-value=21 Score=37.33 Aligned_cols=53 Identities=23% Similarity=0.304 Sum_probs=37.6
Q ss_pred HHhHHHHHHHHHHHCCCCCCCcCEEEEecCCCcchhhHHHHHHHHHHHhhcCCCEEEecc
Q 039172 124 SLAIDPVVQEALHKANLTERDLSAVAVTIGPGLSLCLRVGVQKARKIAGQFNLPIVGVHH 183 (477)
Q Consensus 124 ~~~l~~~i~~~L~~agi~~~did~IAvt~GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~H 183 (477)
.+....+++++|+++|++++|||.|.+..-++... .+-.++..+++|.+.|+-
T Consensus 57 seLa~eAa~~ALekAGI~~~DID~lI~Gdll~Q~~-------sAs~vA~~LGIPa~dV~g 109 (337)
T PRK08304 57 RKMMEDAIQQALQKANLKKSDIDYLLAGDLLNQII-------SANFAARELGIPFLGLYG 109 (337)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCcc-------hHHHHHHHhCCcEEEEec
Confidence 34556799999999999999999998876444221 122334556789888764
No 119
>PLN02377 3-ketoacyl-CoA synthase
Probab=58.17 E-value=25 Score=38.70 Aligned_cols=66 Identities=12% Similarity=0.079 Sum_probs=42.6
Q ss_pred HHHHHh-HHHHHHHHHHHCCCCCCCcCEEEEecCCCc-chhhHHHHHHHHHHHhhcCCCEEEeccHHHHH
Q 039172 121 EAHSLA-IDPVVQEALHKANLTERDLSAVAVTIGPGL-SLCLRVGVQKARKIAGQFNLPIVGVHHMEAHA 188 (477)
Q Consensus 121 ~~H~~~-l~~~i~~~L~~agi~~~did~IAvt~GPG~-~t~LrvG~~~Ak~La~~~~~Pli~V~H~~AHa 188 (477)
+++.+. +..+++++|+++|++++|||.|.|+..|-. .+++ ....++.|....+++-+.++.+-+.+
T Consensus 169 ~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSl--aa~V~~~LGlr~~v~afdL~gmGCsg 236 (502)
T PLN02377 169 REEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSL--SAMIVNKYKLRGNIRSFNLGGMGCSA 236 (502)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcH--HHHHHHHhCCCCCCeEEecccchhhH
Confidence 334443 357999999999999999999999766652 3332 33344555444455666666554444
No 120
>PLN02854 3-ketoacyl-CoA synthase
Probab=57.81 E-value=26 Score=38.82 Aligned_cols=66 Identities=12% Similarity=0.079 Sum_probs=41.9
Q ss_pred HHHHH-hHHHHHHHHHHHCCCCCCCcCEEEEecCCCc-chhhHHHHHHHHHHHhhcCCCEEEeccHHHHH
Q 039172 121 EAHSL-AIDPVVQEALHKANLTERDLSAVAVTIGPGL-SLCLRVGVQKARKIAGQFNLPIVGVHHMEAHA 188 (477)
Q Consensus 121 ~~H~~-~l~~~i~~~L~~agi~~~did~IAvt~GPG~-~t~LrvG~~~Ak~La~~~~~Pli~V~H~~AHa 188 (477)
++..+ .+..+++++|+++|++++|||.|.|+..|-. .+++ ....++.|....+++-+.++.+-+.+
T Consensus 185 r~ea~~v~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSl--Aa~I~n~LGlr~~i~afdLsgmGCSg 252 (521)
T PLN02854 185 RAEAEAVMFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSL--SAMIVNHYKLRTDIKSYNLGGMGCSA 252 (521)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCH--HHHHHHHhCCCCCceEEecccchhhh
Confidence 33333 3557999999999999999999999776542 3332 23344444443455566666544443
No 121
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=57.13 E-value=22 Score=31.41 Aligned_cols=51 Identities=20% Similarity=0.235 Sum_probs=35.6
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEecCCCcchhhHHHHHHHHHHHhhcCCCEEEec
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVTIGPGLSLCLRVGVQKARKIAGQFNLPIVGVH 182 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt~GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~ 182 (477)
+.+...++++|++.++++.+|+.||.-..----.+ -..++..+++|++.++
T Consensus 15 ~~i~~ai~~~l~~~~~~~~~i~~iasi~~K~~E~~-------l~~~A~~l~~~~~~~~ 65 (121)
T PF01890_consen 15 EEIEEAIEQALAEAGLSPRSIAAIASIDIKADEPG-------LLELAEELGIPLRFFS 65 (121)
T ss_dssp HHHHHHHHHHHHHCT--GGGEEEEEESSSSS--HH-------HHHHHHHCTSEEEEE-
T ss_pred HHHHHHHHHHHHHcCCChhhccEEEeccccCCCHH-------HHHHHHHhCCCeEEEC
Confidence 45677899999999999999999996643221222 2467888999998875
No 122
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=54.96 E-value=29 Score=37.21 Aligned_cols=53 Identities=21% Similarity=0.278 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHH-hhcCCCCcEEEEEchhH-hhHHHHHHHHHHHHcCCCEE
Q 039172 339 AVLHLEERCERAIEWA-LKIEPSIKHLVVSGGVA-SNKYVRARLDRAVKNNSLQL 391 (477)
Q Consensus 339 v~~~L~~~~~ral~~~-~~~~~~~~~lvlsGGVA-~N~~Lr~~L~~~~~~~g~~l 391 (477)
+.+..+.++.+.+-.+ -.+..+++.||++||++ -...+|+++.+.++..|+++
T Consensus 305 A~~~f~yri~k~Iga~~a~L~G~vDaiVFTGGIGEns~~vr~~i~~~l~~lGi~l 359 (404)
T TIGR00016 305 AIKMYVHRIAKYIGSYIASLEGNLDAIVFTGGIGENAATVRELVLEALEFLGFEL 359 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCEEEEcCccccCCHHHHHHHHhhhhhcCcee
Confidence 3455555555554322 12222489999999999 77889999988887666543
No 123
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=53.80 E-value=37 Score=31.91 Aligned_cols=62 Identities=15% Similarity=0.245 Sum_probs=43.1
Q ss_pred EEEecccccceEEEEecCCeEEEEe-eehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEec
Q 039172 76 LGIETSCDDTAAAVVRGNGEILSQV-VSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVTI 152 (477)
Q Consensus 76 LgIeTS~ddtsvAlv~~dg~il~~~-~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt~ 152 (477)
+|||....-|=+.+++.+++++... ..+. ...-..-+...+++++++.++++++++.|..+.
T Consensus 2 igIDvGGT~TD~v~~d~~~~~~~~~K~~Tt---------------~~d~~~gi~~al~~l~~~~~~~~~~i~~v~~gT 64 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDEDTGVVATAKVPTT---------------PDDPAEGILEALDALLEESGIDPSDIDRVRHGT 64 (176)
T ss_pred eeEecCCCcEEEEEEeCCCCEEEEEEeCCC---------------CcCHHHHHHHHHHhhhcccCCChhhCcEEEecc
Confidence 6899988888888998663444433 3221 122235567788899998888888998887653
No 124
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=53.74 E-value=28 Score=37.41 Aligned_cols=80 Identities=19% Similarity=0.277 Sum_probs=48.4
Q ss_pred cEEEEEecccccceEEEEec-CCeEEEEeeehhhhhhhhcC-CccchhcHHHH-----------HHhHHHHHHHHHHHCC
Q 039172 73 LIILGIETSCDDTAAAVVRG-NGEILSQVVSSQADLLAKYG-GVAPKMAEEAH-----------SLAIDPVVQEALHKAN 139 (477)
Q Consensus 73 m~iLgIeTS~ddtsvAlv~~-dg~il~~~~~sq~~~h~~~g-Gv~P~~a~~~H-----------~~~l~~~i~~~L~~ag 139 (477)
|+-++||-.+....++++|- +|++++...... -...|| -|+.++..-.+ .+.|..+++++++++|
T Consensus 1 ~~GiAvDiGTTti~~~L~dl~~G~~l~~~s~~N--pQ~~~GaDViSRI~~a~~~~~~~~L~~~i~~~i~~li~~l~~~~g 78 (412)
T PF14574_consen 1 NYGIAVDIGTTTIAAYLVDLETGEVLATASFLN--PQRAYGADVISRISYALSPEGLEELQRLIRETINELIEELLEKAG 78 (412)
T ss_dssp -EEEEEEE-SSEEEEEEEETTT--EEEEEEEE---GGGGT-SSHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEcchhheeeEEEECCCCCEEEeecccC--CCCCcchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45689999999999999984 688887664321 124566 44433322222 1235678888888899
Q ss_pred CCCCCcCEEEEecCC
Q 039172 140 LTERDLSAVAVTIGP 154 (477)
Q Consensus 140 i~~~did~IAvt~GP 154 (477)
+++++|..|++.-.|
T Consensus 79 i~~~~I~~i~i~GNt 93 (412)
T PF14574_consen 79 ISPEDIYEIVIVGNT 93 (412)
T ss_dssp --GGGEEEEEEEE-H
T ss_pred CCHHHeEEEEEEecH
Confidence 999999999988654
No 125
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=53.25 E-value=27 Score=34.31 Aligned_cols=42 Identities=17% Similarity=0.438 Sum_probs=34.4
Q ss_pred CCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCCCCCCcH
Q 039172 359 PSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPPSLCTDN 402 (477)
Q Consensus 359 ~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~~~ctDN 402 (477)
.|++-|++.++-.. ..+|+.|++.|++.|+++.+|.+ +|+-.
T Consensus 75 ~g~kavIvp~~~~~-~g~~~~lk~~~e~~gi~~~~P~~-~CsL~ 116 (217)
T PF02593_consen 75 AGVKAVIVPSESPK-PGLRRQLKKQLEEFGIEVEFPKP-FCSLE 116 (217)
T ss_pred cCCCEEEEecCCCc-cchHHHHHHHHHhcCceeecCcc-ccccC
Confidence 57887776666555 89999999999999999999986 67654
No 126
>CHL00094 dnaK heat shock protein 70
Probab=52.67 E-value=3.8e+02 Score=30.16 Aligned_cols=52 Identities=15% Similarity=0.191 Sum_probs=36.8
Q ss_pred CCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCCCCCCcHHHHHHHHHHHHHHcC
Q 039172 360 SIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGVMVAWTGIEHFCVG 417 (477)
Q Consensus 360 ~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~~~ctDNGamIa~ag~~~~~~g 417 (477)
.++.|++.||-+.-..+++.+.+.+.. ++. .....|-++++|+|-+-....|
T Consensus 328 ~i~~ViLvGGssriP~v~~~l~~~fg~---~~~---~~~~pdeava~GAA~~aa~ls~ 379 (621)
T CHL00094 328 DIDEVVLVGGSTRIPAIQELVKKLLGK---KPN---QSVNPDEVVAIGAAVQAGVLAG 379 (621)
T ss_pred hCcEEEEECCccCChHHHHHHHHHhCC---CcC---cCCCchhHHHhhhHHHHHHhcC
Confidence 578999999999999999999987642 222 2245688888886644333333
No 127
>CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional
Probab=52.62 E-value=22 Score=36.31 Aligned_cols=45 Identities=13% Similarity=0.269 Sum_probs=33.3
Q ss_pred HHhHHHHHHHHHHHCCCCCCCcCEEEEecCCCcchhhHHHHHHHHHHHhhcCCC
Q 039172 124 SLAIDPVVQEALHKANLTERDLSAVAVTIGPGLSLCLRVGVQKARKIAGQFNLP 177 (477)
Q Consensus 124 ~~~l~~~i~~~L~~agi~~~did~IAvt~GPG~~t~LrvG~~~Ak~La~~~~~P 177 (477)
.+.++.+++++|+++|++++|||.+++..+-. .+.+.++..+++|
T Consensus 225 ~~~~~~~i~~~L~~~g~~~~did~~~~hq~~~---------~~~~~~~~~lgl~ 269 (326)
T CHL00203 225 VFQVPAVIIKCLNALNISIDEVDWFILHQANK---------RILEAIANRLSVP 269 (326)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEECCCCH---------HHHHHHHHHhCCC
Confidence 35677899999999999999999998765321 3345566666666
No 128
>PRK12404 stage V sporulation protein AD; Provisional
Probab=51.35 E-value=68 Score=33.49 Aligned_cols=50 Identities=16% Similarity=0.197 Sum_probs=34.1
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEecCCCc-chhhHHHHHHHHHHHhhcCCCEEEec
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVTIGPGL-SLCLRVGVQKARKIAGQFNLPIVGVH 182 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt~GPG~-~t~LrvG~~~Ak~La~~~~~Pli~V~ 182 (477)
+.+..+++.+|+++|++++|||.+.+..-.+- +++ -.++..+++|.++|.
T Consensus 56 ~L~~EA~~~AL~kAGI~~~DID~i~vGdL~nQ~ips--------sfvar~LGIP~~gV~ 106 (334)
T PRK12404 56 KLLEEACSRAIEKAKLRKEDIQFFLAGDLMNQITPT--------SFAARTLGIPYLGLF 106 (334)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEecCCCcCcH--------HHHHHHhCCCcccee
Confidence 34557999999999999999999998542221 111 123445668887774
No 129
>KOG4417 consensus Predicted endonuclease [General function prediction only]
Probab=50.90 E-value=36 Score=33.32 Aligned_cols=101 Identities=18% Similarity=0.173 Sum_probs=57.5
Q ss_pred cEEEEEecccccc-----eEEEE--e-cCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCC
Q 039172 73 LIILGIETSCDDT-----AAAVV--R-GNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERD 144 (477)
Q Consensus 73 m~iLgIeTS~ddt-----svAlv--~-~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~d 144 (477)
-+|-|||+|.+.. ++|++ + .+-++++..... ..+|.+| +|-+-+.+-.+.+.+.++....+-. .-.
T Consensus 42 kyV~GiD~Sf~K~~S~~a~~~lv~~~lp~l~~v~~d~~~-~~Le~pY---vPgfLafREa~v~l~~L~~v~~erh--~fr 115 (261)
T KOG4417|consen 42 KYVAGIDTSFAKLNSDMAYISLVFWTLPDLKHVATDSDT-RMLELPY---VPGFLAFREAEVMLDFLKSVITERH--EFR 115 (261)
T ss_pred eeeeeeccchhhcCCCceEEEEEEEecccceeeeehhhh-hhhccCc---CccceeeehhHHHHHHHHhcccccC--Ccc
Confidence 4789999987533 33333 3 245666654332 2455665 5555555556666666666654321 124
Q ss_pred cCEEEEecCCCcchhhHHHHHHHHHHHhhcCCCEEEec
Q 039172 145 LSAVAVTIGPGLSLCLRVGVQKARKIAGQFNLPIVGVH 182 (477)
Q Consensus 145 id~IAvt~GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~ 182 (477)
+|.|-|+ |-|-+-. +|...|--|....++|.+||-
T Consensus 116 ~dvilvD-GnG~lHp--rGfGlACHlGvL~~lp~iGVa 150 (261)
T KOG4417|consen 116 PDVILVD-GNGELHP--RGFGLACHLGVLSGLPSIGVA 150 (261)
T ss_pred ccEEEEc-CCceEcc--cccchhhhhhHhcCCCccchh
Confidence 6777776 4443332 233445556667788988884
No 130
>PRK13324 pantothenate kinase; Reviewed
Probab=49.83 E-value=1.7e+02 Score=29.33 Aligned_cols=67 Identities=13% Similarity=0.243 Sum_probs=44.1
Q ss_pred EEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEe-cC
Q 039172 75 ILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVT-IG 153 (477)
Q Consensus 75 iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt-~G 153 (477)
+|.||.....+..++++ +++++...... .....+-...+...+...+++.++...+++.|.++ .-
T Consensus 2 iL~iDiGNT~ik~gl~~-~~~~~~~~r~~-------------t~~~~~t~de~~~~l~~~~~~~~~~~~~i~~viisSVv 67 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFD-GDRIVSQIRYA-------------TSSVDSTSDQMGVFLRQALRENSVDLGKIDGCGISSVV 67 (258)
T ss_pred EEEEEeCCCceEEEEEE-CCEEEEEEEEe-------------cCccccchHHHHHHHHHHHHhcCCCccCCCeEEEEeCc
Confidence 89999999999999999 44565432211 00112223445667788888888888888876654 44
Q ss_pred CC
Q 039172 154 PG 155 (477)
Q Consensus 154 PG 155 (477)
|-
T Consensus 68 P~ 69 (258)
T PRK13324 68 PH 69 (258)
T ss_pred ch
Confidence 64
No 131
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=49.43 E-value=37 Score=30.19 Aligned_cols=51 Identities=16% Similarity=0.159 Sum_probs=36.1
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEecCCCcchhhHHHHHHHHHHHhhcCCCEEEec
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVTIGPGLSLCLRVGVQKARKIAGQFNLPIVGVH 182 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt~GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~ 182 (477)
+.+...|+++|++.|+.+..|+.|+...--.--.+ -..++..+++|+..++
T Consensus 17 e~i~~ai~~~L~~~~l~~~si~~lasi~~K~~E~~-------L~~~A~~lg~pl~~~~ 67 (126)
T PRK07027 17 EQIEAAIRAALAQRPLASADVRVVATLDLKADEAG-------LLALCARHGWPLRAFS 67 (126)
T ss_pred HHHHHHHHHHHHHcCCCHHHhheeEehhhhcCCHH-------HHHHHHHhCCCeEEeC
Confidence 34677899999999999999999986531111111 1356778899998874
No 132
>TIGR02845 spore_V_AD stage V sporulation protein AD. Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation.
Probab=48.35 E-value=41 Score=35.03 Aligned_cols=53 Identities=23% Similarity=0.230 Sum_probs=37.4
Q ss_pred HHhHHHHHHHHHHHCCCCCCCcCEEEEecCCCcchhhHHHHHHHHHHHhhcCCCEEEecc
Q 039172 124 SLAIDPVVQEALHKANLTERDLSAVAVTIGPGLSLCLRVGVQKARKIAGQFNLPIVGVHH 183 (477)
Q Consensus 124 ~~~l~~~i~~~L~~agi~~~did~IAvt~GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~H 183 (477)
.+....+++++|+++|++++|||.|.+..-+... ..+-.++..+++|.+.|+-
T Consensus 51 ~eLa~eAa~~ALekAGL~~~DID~IIvGdl~~Q~-------~~As~vA~~LGIP~fdV~~ 103 (327)
T TIGR02845 51 RKLMEDAVNLALKKANLKKDDVDFFLAGDLLNQI-------ITANFVARDLGIPFLGLYG 103 (327)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEeCCCCcc-------cHHHHHHHHhCCCEEEEec
Confidence 3455679999999999999999999876533211 1233455667789888763
No 133
>PRK08963 fadI 3-ketoacyl-CoA thiolase; Reviewed
Probab=48.28 E-value=21 Score=38.24 Aligned_cols=55 Identities=15% Similarity=0.020 Sum_probs=36.2
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEecCCCcchhhHHHHHHHHHHHhhc----CCCEEEecc
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVTIGPGLSLCLRVGVQKARKIAGQF----NLPIVGVHH 183 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt~GPG~~t~LrvG~~~Ak~La~~~----~~Pli~V~H 183 (477)
+....+++++|+++|+.+++||.|.+....+...+ ...++.++... ++|.+.|+.
T Consensus 31 eL~~~a~~~al~~agl~~~~ID~vi~G~~~~~~~~----~~~ar~~a~~aGl~~~~P~~tV~~ 89 (428)
T PRK08963 31 DLGKMVVGELLARSEIDPELIEQLVFGQVVQMPEA----PNIAREIVLGTGMNVHTDAYSVSR 89 (428)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEeccCCCCCc----cHHHHHHHHHCCCCCCCcceeehh
Confidence 34467899999999999999999998865433322 12333333333 466777664
No 134
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=47.94 E-value=2.2e+02 Score=26.09 Aligned_cols=98 Identities=16% Similarity=0.157 Sum_probs=39.8
Q ss_pred cEEEEEeccccc----ceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEE
Q 039172 73 LIILGIETSCDD----TAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAV 148 (477)
Q Consensus 73 m~iLgIeTS~dd----tsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~I 148 (477)
..||++-...++ +-++++|++|+++...... ....+.....+..+.|..+| ++ ..+|.|
T Consensus 5 ~rVla~~~g~g~~~~~~~~v~ld~~G~v~d~~~~~--------~~~~~~~~~~~~~~~l~~~i----~~-----~kP~vI 67 (150)
T PF14639_consen 5 PRVLALSWGSGDGDDAVFCVVLDENGEVLDHLKLV--------YNERDRERKEEDMERLKKFI----EK-----HKPDVI 67 (150)
T ss_dssp --EEEEE-TT--TTS-EEEEEE-TTS-EEEEEEE---------S-TT-SS-SHHHHHHHHHHH----HH-----H--SEE
T ss_pred CEEEEEEcCCCCCCCCEEEEEECCCCcEEEEEEEc--------CCccchHHHHHHHHHHHHHH----HH-----cCCeEE
Confidence 358888776554 5677889999998776431 00111122233334444444 33 268999
Q ss_pred EEecCCCcchhhHHHHHHHHHHHhh------cCCCEEEeccHHHHHH
Q 039172 149 AVTIGPGLSLCLRVGVQKARKIAGQ------FNLPIVGVHHMEAHAL 189 (477)
Q Consensus 149 Avt~GPG~~t~LrvG~~~Ak~La~~------~~~Pli~V~H~~AHa~ 189 (477)
+++ |-+ ..+.++=-.+.+-+... ..+|++-|+--.|-++
T Consensus 68 ~v~-g~~-~~s~~l~~~v~~~v~~~~~~~~~~~i~V~~v~~~~A~lY 112 (150)
T PF14639_consen 68 AVG-GNS-RESRKLYDDVRDIVEELDEDEQMPPIPVVIVDDEVARLY 112 (150)
T ss_dssp EE---SS-THHHHHHHHHHHHHHHTTB-TTS-B--EEE---TTHHHH
T ss_pred EEc-CCC-hhHHHHHHHHHHHHHHhhhcccCCCceEEEECcHHHHHH
Confidence 994 422 33433322233333222 2466666665555544
No 135
>PRK06205 acetyl-CoA acetyltransferase; Provisional
Probab=47.84 E-value=24 Score=37.45 Aligned_cols=30 Identities=10% Similarity=0.209 Sum_probs=24.7
Q ss_pred HHhHHHHHHHHHHHCCCCCCCcCEEEEecC
Q 039172 124 SLAIDPVVQEALHKANLTERDLSAVAVTIG 153 (477)
Q Consensus 124 ~~~l~~~i~~~L~~agi~~~did~IAvt~G 153 (477)
.+....+++++|+++|++++|||.|.+..-
T Consensus 27 ~eLa~~A~~~AL~~agl~~~dID~vv~g~~ 56 (404)
T PRK06205 27 EELAATVIRALVERTGIDPARIDDVIFGQG 56 (404)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEEec
Confidence 344567899999999999999999987653
No 136
>PRK08235 acetyl-CoA acetyltransferase; Provisional
Probab=46.69 E-value=24 Score=37.41 Aligned_cols=58 Identities=21% Similarity=0.148 Sum_probs=35.5
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEecC-CCcchhhHHHHHHHHHHHhhcCCCEEEecc
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVTIG-PGLSLCLRVGVQKARKIAGQFNLPIVGVHH 183 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt~G-PG~~t~LrvG~~~Ak~La~~~~~Pli~V~H 183 (477)
+....+++++|+++|++++|||.|.+... |+. .+.-.+...+..+....++|.+.|+.
T Consensus 28 eLa~~A~~~aL~~agl~~~dID~vi~g~~~~~~-~~~~~~~~~~~~~Gl~~~~p~~~V~~ 86 (393)
T PRK08235 28 ELGGIAIKEALERANVSAEDVEEVIMGTVLQGG-QGQIPSRQAARAAGIPWEVQTETVNK 86 (393)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEecccCC-CCCCHHHHHHHHcCCCCCcceeehhh
Confidence 44457899999999999999999988643 211 11112222233333334577777763
No 137
>PRK13331 pantothenate kinase; Reviewed
Probab=46.51 E-value=73 Score=31.93 Aligned_cols=64 Identities=8% Similarity=-0.019 Sum_probs=43.3
Q ss_pred CCcEEEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEE-
Q 039172 71 DDLIILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVA- 149 (477)
Q Consensus 71 ~~m~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IA- 149 (477)
..|.+|.||.....+.+++++ +.+++.... +. ..+... +..+|+..++.+++++.++
T Consensus 5 ~~~~~L~iDiGNT~~~~g~f~-~~~~~~~~r-t~----------------~~~t~d----~~~~l~~~~~~~~~i~~~ii 62 (251)
T PRK13331 5 TSNEWLALMIGNSRLHWGYFS-GETLVKTWD-TP----------------HLDESI----IQLLLPGQTLLIVAPNPLVI 62 (251)
T ss_pred CCCcEEEEEeCCCcEEEEEEE-CCEEEEEEE-cC----------------CcchHH----HHHHHHHcCCCccccCEEEE
Confidence 457799999999999999999 446654322 21 000111 6778888888888887755
Q ss_pred EecCCCc
Q 039172 150 VTIGPGL 156 (477)
Q Consensus 150 vt~GPG~ 156 (477)
++.-|-.
T Consensus 63 sSVVP~~ 69 (251)
T PRK13331 63 ASVVPQQ 69 (251)
T ss_pred EecCccH
Confidence 5566754
No 138
>PLN02932 3-ketoacyl-CoA synthase
Probab=46.39 E-value=49 Score=36.26 Aligned_cols=68 Identities=12% Similarity=0.081 Sum_probs=41.2
Q ss_pred HHHHHHhH-HHHHHHHHHHCCCCCCCcCEEEEec-CCCcchhhHHHHHHHHHHHhhcCCCEEEeccHHHHHH
Q 039172 120 EEAHSLAI-DPVVQEALHKANLTERDLSAVAVTI-GPGLSLCLRVGVQKARKIAGQFNLPIVGVHHMEAHAL 189 (477)
Q Consensus 120 ~~~H~~~l-~~~i~~~L~~agi~~~did~IAvt~-GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~H~~AHa~ 189 (477)
.+++.+.+ ..+++++|+++|++++|||.|.+.. -|-..+++ ...+++.|....+++-+.++.+-+.+.
T Consensus 144 ~~~ea~~la~~Aa~~aL~~agi~p~dId~lIv~tst~~~~Psl--aa~V~~~lGlr~~i~~fdL~gmGCSgg 213 (478)
T PLN02932 144 SRKETEEVIIGAVDNLFRNTGISPSDIGILVVNSSTFNPTPSL--SSILVNKFKLRDNIKSLNLGGMGCSAG 213 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCCcH--HHHHHHHhCCCCCceEEEeccchhhhH
Confidence 34445444 4799999999999999999996554 33333332 233344444333455666665555443
No 139
>PRK07108 acetyl-CoA acetyltransferase; Provisional
Probab=46.25 E-value=27 Score=37.07 Aligned_cols=54 Identities=26% Similarity=0.260 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHCCCCCCCcCEEEEec-CCCcchhhHHHHHHHHHHHhhcC----CCEEEecc
Q 039172 126 AIDPVVQEALHKANLTERDLSAVAVTI-GPGLSLCLRVGVQKARKIAGQFN----LPIVGVHH 183 (477)
Q Consensus 126 ~l~~~i~~~L~~agi~~~did~IAvt~-GPG~~t~LrvG~~~Ak~La~~~~----~Pli~V~H 183 (477)
....+++++|+++|++++|||.|.+.. -|+...+- ..|+.++...+ +|.+.|+.
T Consensus 30 L~~~A~~~aL~~agi~~~~ID~vi~G~~~~~~~~~~----~~a~~i~~~lGl~~~~p~~~V~~ 88 (392)
T PRK07108 30 LGGHVVQHAVERAKLDPAEVEDVIMGCANPEGATGA----NIARQIALRAGLPVTVPGMTVNR 88 (392)
T ss_pred HHHHHHHHHHHHcCCCHHHCCcEEEEEeeccccccc----HHHHHHHHHcCCCCCCceeeecc
Confidence 345689999999999999999998854 33333221 23444444434 78888864
No 140
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=45.42 E-value=46 Score=34.11 Aligned_cols=37 Identities=16% Similarity=0.123 Sum_probs=28.7
Q ss_pred HHHHHH-hHHHHHHHHHHHCCCCCCCcCEEEEecCCCc
Q 039172 120 EEAHSL-AIDPVVQEALHKANLTERDLSAVAVTIGPGL 156 (477)
Q Consensus 120 ~~~H~~-~l~~~i~~~L~~agi~~~did~IAvt~GPG~ 156 (477)
+++..+ .+..+++++|+++|++++|||.+.|+..=+.
T Consensus 79 a~~Eae~v~f~av~~LL~ktgv~p~dIdiLVvncs~f~ 116 (290)
T PF08392_consen 79 AREEAEMVIFGAVDDLLAKTGVKPSDIDILVVNCSLFN 116 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECcCCC
Confidence 344444 4568999999999999999999988865443
No 141
>PRK12379 propionate/acetate kinase; Provisional
Probab=44.43 E-value=47 Score=35.54 Aligned_cols=113 Identities=18% Similarity=0.216 Sum_probs=56.7
Q ss_pred CcEEEEEecccccceEEEEecC-CeEEEEeeehhhh-----hhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCc
Q 039172 72 DLIILGIETSCDDTAAAVVRGN-GEILSQVVSSQAD-----LLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDL 145 (477)
Q Consensus 72 ~m~iLgIeTS~ddtsvAlv~~d-g~il~~~~~sq~~-----~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~di 145 (477)
.-.||.|++.+.....+|++-+ .+++..-..+++- +..+ +|..-......|.+.+..+++. |.+.++ ..+|
T Consensus 4 ~~~iLvlN~GSSSlK~~l~~~~~~~~l~~G~ve~ig~~~~~~~~~-~~~~~~~~~~~h~~a~~~i~~~-l~~~~~-~~~i 80 (396)
T PRK12379 4 FPVVLVINCGSSSIKFSVLDASDCEVLMSGIADGINSENAFLSVN-GGEPAPLAHHSYEGALKAIAFE-LEKRNL-NDSV 80 (396)
T ss_pred CCEEEEEECChHhheEEEEECCCCceEEEEEEeeccCCCceEEec-CCccccCCCCCHHHHHHHHHHH-HHhcCC-ccce
Confidence 3479999999999999999843 3444333222211 0001 2211001112465555544443 444443 3688
Q ss_pred CEEE---EecCCCcchhhHHHHHHHHHHHhhcCCCEEEeccHHHHHHH
Q 039172 146 SAVA---VTIGPGLSLCLRVGVQKARKIAGQFNLPIVGVHHMEAHALV 190 (477)
Q Consensus 146 d~IA---vt~GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~H~~AHa~s 190 (477)
++|+ |--|+-+..+.+|--.+-..|.. -.|+-+.|| -+++..
T Consensus 81 ~aVGHRVVHGG~~f~~~v~V~~~v~~~l~~--~~~lAPlHn-p~nL~~ 125 (396)
T PRK12379 81 ALIGHRIAHGGSIFTESVIITDEVIDNIRR--VSPLAPLHN-YANLSG 125 (396)
T ss_pred eEEEEeeeCCCCCCCCCEEECHHHHHHHHh--cCcCcccCC-HHHHHH
Confidence 8887 33455555555555444444432 235545444 344433
No 142
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=44.33 E-value=34 Score=36.43 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=42.8
Q ss_pred EEEEEecccccceEEEEecC-CeEEEEeeehhhhhhhh------cCCcc--chhcHHHHHHhHHHHHHHHHHH--CCCCC
Q 039172 74 IILGIETSCDDTAAAVVRGN-GEILSQVVSSQADLLAK------YGGVA--PKMAEEAHSLAIDPVVQEALHK--ANLTE 142 (477)
Q Consensus 74 ~iLgIeTS~ddtsvAlv~~d-g~il~~~~~sq~~~h~~------~gGv~--P~~a~~~H~~~l~~~i~~~L~~--agi~~ 142 (477)
+||.|++.+..+..+|++.+ .+++.+-..+.+..+.. .+|-. -......|...+. .+-+.|++ .+...
T Consensus 1 KILVIN~GSSS~Kfalf~~~~~~~l~~g~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~il~~L~~~~~~~~~ 79 (388)
T PF00871_consen 1 KILVINPGSSSTKFALFDMDSGEVLASGLVERIGSPDSEILHKVSGGQKEQEPTIIDQHEYALE-AILDFLKEHGIGFDL 79 (388)
T ss_dssp EEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTSTTHEEEEEECTTEEEEEESTSCSHHHHHH-HHHHHHHHTTSTTCG
T ss_pred CEEEEcCChHhheeeeEECCCCCeeeechheeccCCcceeeeecCCCcccccccCCCCHHHHHH-HHHHHHHhcCCcccc
Confidence 58999999999999999964 35554332222211111 12210 0112234555444 44455555 34457
Q ss_pred CCcCEEEEe
Q 039172 143 RDLSAVAVT 151 (477)
Q Consensus 143 ~did~IAvt 151 (477)
.+||+|+.=
T Consensus 80 ~~i~AVghR 88 (388)
T PF00871_consen 80 EEIDAVGHR 88 (388)
T ss_dssp GGEEEEEEE
T ss_pred CceeEEEEe
Confidence 899999844
No 143
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=44.08 E-value=1.8e+02 Score=32.83 Aligned_cols=125 Identities=19% Similarity=0.250 Sum_probs=61.6
Q ss_pred CcEEEEEeccc---ccc----eEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHH---HHHHHHCCCC
Q 039172 72 DLIILGIETSC---DDT----AAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVV---QEALHKANLT 141 (477)
Q Consensus 72 ~m~iLgIeTS~---ddt----svAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i---~~~L~~agi~ 141 (477)
+|.|+|||-.. +.- +++++. ||+++-....+...+..-.---.|..-+- .|+..+. ++++.-.+.-
T Consensus 1 ~~~I~GVDI~~g~p~~~~p~yAvv~~~-dg~~~~k~~~s~~rllrli~~~kpDIvAv---DnvyEL~~~~~~li~il~~l 76 (652)
T COG2433 1 DMVIMGVDIVSGSPRGKAPLYAVVILE-DGEIVEKGEVSLRRLLRLIWSYKPDIVAV---DNVYELGADKRDLIRILKRL 76 (652)
T ss_pred CceEEEEeeecCCCCCcCcceeEEEEe-cCcEEeehhhhHHHHHHHHHhcCCCEEEe---ccHHHHhcChhHHHHHHHhC
Confidence 47899999742 222 567765 77776544333222110000001111110 1222222 2333333344
Q ss_pred CCCcCEEEEecCCCcchhhHHHHHHHHHHHhhcCCCEEE-eccH-HHHHHHHHHhhhhcCCcCceeeeecc
Q 039172 142 ERDLSAVAVTIGPGLSLCLRVGVQKARKIAGQFNLPIVG-VHHM-EAHALVARQWLTMTRMQNDFLDLFNN 210 (477)
Q Consensus 142 ~~did~IAvt~GPG~~t~LrvG~~~Ak~La~~~~~Pli~-V~H~-~AHa~sa~~~~~~~~~~~P~l~llDg 210 (477)
|.....|=||.+||-+-+| ..||..+|+|+=+ .+-. +|-+ .+++ ...++..++.++-|.
T Consensus 77 P~~tkLVQVTg~~g~~~sL-------~~lArr~G~~~~~~~~P~eeA~~-~A~L--A~~GvG~ev~~fEde 137 (652)
T COG2433 77 PEGTKLVQVTGRPGEQESL-------WELARRHGIRVNGKLNPYEEAYA-CARL--ASKGVGTEVSVFEDE 137 (652)
T ss_pred CCCceEEEEeCCCCCcchH-------HHHHHHhCCCCCCCCChHHHHHH-HHHH--HhcCCCceeEeeeee
Confidence 5678899999999988887 3566666665431 1222 2332 3344 245666665554343
No 144
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=43.55 E-value=22 Score=28.89 Aligned_cols=32 Identities=16% Similarity=0.400 Sum_probs=27.3
Q ss_pred EEEEchhHhhHHHHHHHHHHHHcCCCEEEcCC
Q 039172 364 LVVSGGVASNKYVRARLDRAVKNNSLQLVCPP 395 (477)
Q Consensus 364 lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp 395 (477)
++|++|++.+..+.+++++.++++|+++..-.
T Consensus 4 vvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~ 35 (90)
T PF02302_consen 4 VVCGSGIGTSLMVANKIKKALKELGIEVEVSA 35 (90)
T ss_dssp EEESSSSHHHHHHHHHHHHHHHHTTECEEEEE
T ss_pred EECCChHHHHHHHHHHHHHHHHhccCceEEEE
Confidence 67889999999999999999999997665543
No 145
>PRK08313 acetyl-CoA acetyltransferase; Provisional
Probab=43.53 E-value=31 Score=36.41 Aligned_cols=58 Identities=24% Similarity=0.277 Sum_probs=36.4
Q ss_pred HHhHHHHHHHHHHHCCCCCCCcCEEEEecCCCcchhh-HHHHHHHHHHHhhcCCCEEEec
Q 039172 124 SLAIDPVVQEALHKANLTERDLSAVAVTIGPGLSLCL-RVGVQKARKIAGQFNLPIVGVH 182 (477)
Q Consensus 124 ~~~l~~~i~~~L~~agi~~~did~IAvt~GPG~~t~L-rvG~~~Ak~La~~~~~Pli~V~ 182 (477)
.+....+++++|+.+|++++|||.|.+...|..+.+. ..+..++..|.. .++|.+.|+
T Consensus 25 ~eL~~eAa~~Al~dAgl~~~dID~iv~~~~~~~~~~~~~~~~~va~~LGl-~~~~~~~v~ 83 (386)
T PRK08313 25 AGLVREAIDRALADAGLTWDDIDAVVVGKAPDFFEGVMMPELFLADALGA-TGKPLIRVH 83 (386)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEeccccccccccCchHHHHHhcCC-CCCceEEEe
Confidence 3445678889999999999999999987666554321 111233333332 235666664
No 146
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=43.08 E-value=57 Score=34.75 Aligned_cols=115 Identities=16% Similarity=0.168 Sum_probs=58.4
Q ss_pred cEEEEEecccccceEEEEecC-CeEEEEeeehhhhhh-----hhcCC-c-cch-hcHHHHHHhHHHHHHHHHHHCC--CC
Q 039172 73 LIILGIETSCDDTAAAVVRGN-GEILSQVVSSQADLL-----AKYGG-V-APK-MAEEAHSLAIDPVVQEALHKAN--LT 141 (477)
Q Consensus 73 m~iLgIeTS~ddtsvAlv~~d-g~il~~~~~sq~~~h-----~~~gG-v-~P~-~a~~~H~~~l~~~i~~~L~~ag--i~ 141 (477)
|+||.|++.+.....+|++.. ++++..-..+++... -+++| . ... ..-..|.+.+..+++.+.+ .+ .+
T Consensus 1 ~~iLviN~GSSSlKf~l~~~~~~~~~~~Gl~Erig~~~~~~~~~~~~~~~~~~~~~~~dh~~al~~l~~~l~~-~~ii~~ 79 (396)
T COG0282 1 MKILVINAGSSSLKFQLFDMPELEVLASGLAERIGLPDAIITIKFDGKQKLELEADIADHKEALKLLLETLEE-HKIIKS 79 (396)
T ss_pred CeEEEEecCcchheeeEeccCcccchhhhhHHHcCCCCceEEEEecCccceeeecCCCCHHHHHHHHHHHHHh-cchhcc
Confidence 579999999999999999743 334433322221110 12232 0 000 1113377777766666655 33 34
Q ss_pred CCCcCEEE---EecCCCcchhhHHHHHHHHHHHhhcCCCEEEeccHHHHHHHH
Q 039172 142 ERDLSAVA---VTIGPGLSLCLRVGVQKARKIAGQFNLPIVGVHHMEAHALVA 191 (477)
Q Consensus 142 ~~did~IA---vt~GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~H~~AHa~sa 191 (477)
.++|++|. |--|.-+-.+..|--.+-+.+.... |+-+. |=-+|+...
T Consensus 80 ~~~I~~vGHRVVhGGe~f~~svli~~eVl~~I~~~~--~LAPL-HNPanl~gI 129 (396)
T COG0282 80 LDEIDAVGHRVVHGGEKFTESVLIDDEVLKAIEDLS--PLAPL-HNPANLIGI 129 (396)
T ss_pred hhhhcEEeeEEEecccccCccEEEcHHHHHHHHhhc--ccCCC-CChHhHHHH
Confidence 47899887 3334444334444444444444322 33332 334555443
No 147
>PRK12397 propionate kinase; Reviewed
Probab=43.04 E-value=54 Score=35.16 Aligned_cols=76 Identities=18% Similarity=0.225 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhH-HHHHHHHHHHHcCCCEE-----------Ec-CC-----CCCCC
Q 039172 339 AVLHLEERCERAIEWALKIEPSIKHLVVSGGVASNK-YVRARLDRAVKNNSLQL-----------VC-PP-----PSLCT 400 (477)
Q Consensus 339 v~~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~-~Lr~~L~~~~~~~g~~l-----------~~-Pp-----~~~ct 400 (477)
+.++.+.++.+.+-.+.....+++.||++||++-|+ .+|+++.+.++..|+++ +- +. ...+|
T Consensus 300 A~d~f~yri~k~IGa~~a~lggvDaiVFTGGIGEns~~vR~~ic~~L~~lGi~lD~~~N~~~~~~Is~~~S~v~v~VipT 379 (404)
T PRK12397 300 ALTLFAERIRATIGSYIMQMGGLDALVFTGGIGENSARARSAVCHNLQFLGLAVDEEKNQRNATFIQTENALVKVAVINT 379 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCEEEECCchhhCCHHHHHHHHhhhhhcCceECHHHcCCCCCeecCCCCCceEEEECC
Confidence 345556665555432221235799999999999876 56777777776555433 11 11 11357
Q ss_pred cHHHHHHHHHHHHH
Q 039172 401 DNGVMVAWTGIEHF 414 (477)
Q Consensus 401 DNGamIa~ag~~~~ 414 (477)
|--.|||.-.+..+
T Consensus 380 nEEl~IA~~~~~l~ 393 (404)
T PRK12397 380 NEELMIAQDVMRIA 393 (404)
T ss_pred CHHHHHHHHHHHHh
Confidence 77778877666554
No 148
>PRK09051 beta-ketothiolase; Provisional
Probab=43.03 E-value=31 Score=36.66 Aligned_cols=60 Identities=18% Similarity=0.110 Sum_probs=35.3
Q ss_pred HHhHHHHHHHHHHHCCCCCCCcCEEEEecC-CCcchhhHHHHHHHHHHHhhcCCCEEEecc
Q 039172 124 SLAIDPVVQEALHKANLTERDLSAVAVTIG-PGLSLCLRVGVQKARKIAGQFNLPIVGVHH 183 (477)
Q Consensus 124 ~~~l~~~i~~~L~~agi~~~did~IAvt~G-PG~~t~LrvG~~~Ak~La~~~~~Pli~V~H 183 (477)
.+....+++++|+++|++++|||.|.+... |......-++...+..+....++|.+.|+.
T Consensus 28 ~eL~~~A~~~AL~~agi~~~dID~vi~g~~~~~~~~~~~~a~~~~~~~Gl~~~~p~~~V~~ 88 (394)
T PRK09051 28 TDLGATVVREALARAGVDPDQVGHVVFGHVIPTEPRDMYLSRVAAINAGVPQETPAFNVNR 88 (394)
T ss_pred HHHHHHHHHHHHHHcCCCHHHcCEEEEeeeccccCCCccHHHHHHHHcCCCCCCceEEecc
Confidence 345567899999999999999999987632 211111112222222222112478878764
No 149
>PRK05656 acetyl-CoA acetyltransferase; Provisional
Probab=42.60 E-value=32 Score=36.41 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=23.7
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEec
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVTI 152 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt~ 152 (477)
+....+++++|+++|++++|||.|.+..
T Consensus 28 ~La~~A~~~AL~~agl~~~dID~vi~g~ 55 (393)
T PRK05656 28 ELGAAVIRRLLEQTGLDPAQVDEVILGQ 55 (393)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEE
Confidence 4445789999999999999999998854
No 150
>PRK06366 acetyl-CoA acetyltransferase; Provisional
Probab=42.46 E-value=30 Score=36.61 Aligned_cols=30 Identities=10% Similarity=0.065 Sum_probs=25.2
Q ss_pred HHHhHHHHHHHHHHHCCCCCCCcCEEEEec
Q 039172 123 HSLAIDPVVQEALHKANLTERDLSAVAVTI 152 (477)
Q Consensus 123 H~~~l~~~i~~~L~~agi~~~did~IAvt~ 152 (477)
..+....+++++|+++|++++|||.|.+..
T Consensus 26 ~~~L~~~a~~~al~dagi~~~dID~vi~g~ 55 (388)
T PRK06366 26 APQLGGAAIKAVIDDAKLDPALVQEVIMGN 55 (388)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence 345566899999999999999999998764
No 151
>PLN00415 3-ketoacyl-CoA synthase
Probab=41.50 E-value=62 Score=35.36 Aligned_cols=61 Identities=11% Similarity=0.078 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHCCCCCCCcCEEEEecCCC-cchhhHHHHHHHHHHHhhcCCCEEEeccHHHHH
Q 039172 126 AIDPVVQEALHKANLTERDLSAVAVTIGPG-LSLCLRVGVQKARKIAGQFNLPIVGVHHMEAHA 188 (477)
Q Consensus 126 ~l~~~i~~~L~~agi~~~did~IAvt~GPG-~~t~LrvG~~~Ak~La~~~~~Pli~V~H~~AHa 188 (477)
.+..+++++|+++|++++|||.|.|+..|- .++++- ...++.+...-++.-+.++.|-+.+
T Consensus 137 ~i~~A~~~aL~~aGi~p~dID~LIvs~T~~~~~Psla--a~l~~~LGLr~~v~~~dL~gmGCsg 198 (466)
T PLN00415 137 VIFGALNSLFKKTGIEPREVGIFIVNCSLFNPNPSLS--SMIVNRYKLKTDVKTYNLSGMGCSA 198 (466)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEECcCCCCCchHH--HHHHHHhCCCCCceEEEeccccchH
Confidence 355789999999999999999988876544 234432 2233334333345566666544443
No 152
>PRK06633 acetyl-CoA acetyltransferase; Provisional
Probab=41.45 E-value=22 Score=37.79 Aligned_cols=28 Identities=7% Similarity=0.137 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHCCCCCCCcCEEEEecC
Q 039172 126 AIDPVVQEALHKANLTERDLSAVAVTIG 153 (477)
Q Consensus 126 ~l~~~i~~~L~~agi~~~did~IAvt~G 153 (477)
....+++++|+++|++++|||.|.+..-
T Consensus 30 L~~~a~~~al~~agi~~~~Id~vv~G~~ 57 (392)
T PRK06633 30 LAAHLIKDILQNSKIDPALVNEVILGQV 57 (392)
T ss_pred HHHHHHHHHHHHcCCCHHHcCEEEEEec
Confidence 3457899999999999999999998653
No 153
>PRK06065 acetyl-CoA acetyltransferase; Provisional
Probab=41.43 E-value=44 Score=35.48 Aligned_cols=56 Identities=18% Similarity=0.169 Sum_probs=37.1
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEecCCCcchhhHHHHHHHHHHHhh---cCCCEEEecc
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVTIGPGLSLCLRVGVQKARKIAGQ---FNLPIVGVHH 183 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt~GPG~~t~LrvG~~~Ak~La~~---~~~Pli~V~H 183 (477)
+....+++++|+.+|++++|||.+.+..-|+.+.+.. ..+..++.. .++|.+.|+.
T Consensus 31 ~L~~~A~~~Al~dagl~~~dID~~i~~~~~~~~~~~~---~~a~~l~~~lG~~~~~~~~V~~ 89 (392)
T PRK06065 31 ELAWEAASKALDEAGLELKDIDCVVIGSAPDAFDGVH---MKGEYLSHGSGGIRKPVSRVYV 89 (392)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEeccCCcccccc---cHHHHHHHHcCCCCCCeEEEec
Confidence 4456789999999999999999998865455443321 122334433 3478877764
No 154
>PF07451 SpoVAD: Stage V sporulation protein AD (SpoVAD); InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation [].; PDB: 3LMA_D 3LM6_A.
Probab=41.17 E-value=1.2e+02 Score=31.49 Aligned_cols=62 Identities=27% Similarity=0.261 Sum_probs=37.3
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEecCCCcchhhHHHHHHHHHHHhhcCCCEEEec-----cHHHHHHHHHH
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVTIGPGLSLCLRVGVQKARKIAGQFNLPIVGVH-----HMEAHALVARQ 193 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt~GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~-----H~~AHa~sa~~ 193 (477)
..+..+++.+|++++++.+|||.+-..- +.+= .+..+|+ +..+++|++++- ..++.++++.+
T Consensus 53 ~m~~~A~~~al~Ka~l~~~dId~~~aGD---LlnQ-~i~s~f~---ar~l~iPf~GlygACST~~e~l~laa~~ 119 (329)
T PF07451_consen 53 KMQKEAVELALKKAGLKKEDIDYLFAGD---LLNQ-IISSSFA---ARDLGIPFLGLYGACSTMMESLALAAML 119 (329)
T ss_dssp HHHHHHHHHHHHHTT--GGG-SEEEEEE---TTCC-CCHHHHH---HHHHT--EEEB--CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHCeEEEehh---hhhh-hHHHHHH---HHhcCCCccchhhHHHHHHHHHHHHHHH
Confidence 3455799999999999999999986431 1111 1233333 456789998873 56777777766
No 155
>PF10079 DUF2317: Uncharacterized protein conserved in bacteria (DUF2317); InterPro: IPR011199 Members of this protein family include BshC, which is an enzyme required for bacillithiol biosynthesis and described as a cysteine-adding enzyme. Bacillithiol is a low-molecular-weight thiol, an analog of glutathione and mycothiol, and is found largely in the Firmicutes.
Probab=40.90 E-value=64 Score=35.93 Aligned_cols=41 Identities=22% Similarity=0.353 Sum_probs=31.6
Q ss_pred CcCEEEEecC--CCcchhh-------HHHHHHHHHHHhhcCCCEEEeccH
Q 039172 144 DLSAVAVTIG--PGLSLCL-------RVGVQKARKIAGQFNLPIVGVHHM 184 (477)
Q Consensus 144 did~IAvt~G--PG~~t~L-------rvG~~~Ak~La~~~~~Pli~V~H~ 184 (477)
+-+.++|+.| +|+|||= -..+..||.+...++.|+|+|-=+
T Consensus 82 ~~~t~vVvtGQQ~gLfTGPLYtiyK~is~I~LA~~l~~~l~~pvVPVFWi 131 (542)
T PF10079_consen 82 DPNTFVVVTGQQAGLFTGPLYTIYKAISAIKLAKELEEELGRPVVPVFWI 131 (542)
T ss_pred CCCCEEEEeCcccccccchHHHHHHHHHHHHHHHHHHHHhCCCeeeEEEc
Confidence 5577777776 8999983 345668899999999999998644
No 156
>PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=40.61 E-value=39 Score=35.22 Aligned_cols=53 Identities=13% Similarity=0.116 Sum_probs=33.6
Q ss_pred HHHHHHHHHHCCCCCCCcCEEE-EecCCCcchhhHHHHHHHHHHHhhcCCCEEEe
Q 039172 128 DPVVQEALHKANLTERDLSAVA-VTIGPGLSLCLRVGVQKARKIAGQFNLPIVGV 181 (477)
Q Consensus 128 ~~~i~~~L~~agi~~~did~IA-vt~GPG~~t~LrvG~~~Ak~La~~~~~Pli~V 181 (477)
..+.+++|+++|++++|||.|. +|..|+.... -.....++.|....+++.+.|
T Consensus 65 ~~Aa~~aL~~a~~~~~dId~lI~~t~t~d~~~P-~~a~~v~~~Lg~~~~~~~~di 118 (353)
T PRK12880 65 KHAANTLLQGLNIDKNSLDALIVVTQSPDFFMP-STACYLHQLLNLSSKTIAFDL 118 (353)
T ss_pred HHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCC-cHHHHHHHHhCCCCCceEEeh
Confidence 4689999999999999999986 5566765433 223333444433223444555
No 157
>PRK04011 peptide chain release factor 1; Provisional
Probab=40.42 E-value=1.9e+02 Score=31.02 Aligned_cols=141 Identities=21% Similarity=0.255 Sum_probs=69.2
Q ss_pred hhhhhccccccccccCCCCC-----ccCC---CCCccccccccccCCCCCCcc----cccCCCccCCCCcccccccCCCC
Q 039172 4 LQTLSSRISRLNLLQKPSLN-----YSPM---SPGLFVRHNRQIIRPTWSPLR----IFSLPNRHFSSKNFGQIKMSAKD 71 (477)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 71 (477)
+..+.+.+.|+.+++++.-| ..-. .||--+-|+..+.-|. .... -|..+..-+... ... .+.
T Consensus 67 ~~ai~~~~~rl~~~~~~p~nGl~~f~g~~~~~~~~~~~~~t~~i~p~~-~i~~~~y~~d~~f~le~L~e----~~~-~~~ 140 (411)
T PRK04011 67 QSALESIIQRLKLYKKPPENGLVIFCGAVPIGGPGTEDMETYVIEPPE-PVPTFFYRCDSEFHTEPLED----MLE-DKE 140 (411)
T ss_pred HHHHHHHHHhhccCCCCCCCeEEEEEeecccCCCCCceEEEEEEcCCC-ccEEEEecCCcHHHHHHHHH----Hhc-CCC
Confidence 35678889999999887433 2211 3455566776665332 1211 122222222221 112 255
Q ss_pred CcEEEEEecccccceEEEEecCC-eEEEEeeehhhhhhhh-c-CCccc-------hhcHHHHHHhHHHHHHHHHHHCCCC
Q 039172 72 DLIILGIETSCDDTAAAVVRGNG-EILSQVVSSQADLLAK-Y-GGVAP-------KMAEEAHSLAIDPVVQEALHKANLT 141 (477)
Q Consensus 72 ~m~iLgIeTS~ddtsvAlv~~dg-~il~~~~~sq~~~h~~-~-gGv~P-------~~a~~~H~~~l~~~i~~~L~~agi~ 141 (477)
...++.||.. ...++++...+ +++..+. + .+..+ . ||--- +.+..++.+.+...+.+++....
T Consensus 141 ~~~~VvvD~~--~A~i~~l~g~~~~~~~~i~-~--~vp~K~~~GG~S~~Rf~r~~e~~~~~f~k~Vae~~~~~f~~~~-- 213 (411)
T PRK04011 141 VYGLIVVDRR--EATIGLLKGKRIEVLKELT-S--FVPGKHRKGGQSARRFERLIEQAAHEFYKRVGEKANEAFLPLL-- 213 (411)
T ss_pred CEEEEEEecC--ceEEEEEeCCEEEEEEEEE-e--eCCCCccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc--
Confidence 6677778764 45578887554 2333332 1 12122 2 45321 12222333334444444433211
Q ss_pred CCCcCEEEEecCCCcch
Q 039172 142 ERDLSAVAVTIGPGLSL 158 (477)
Q Consensus 142 ~~did~IAvt~GPG~~t 158 (477)
..+++.|.+. |||.+.
T Consensus 214 ~~~v~~Ivla-Gpg~~K 229 (411)
T PRK04011 214 EGKLKGILIG-GPGPTK 229 (411)
T ss_pred cccccEEEEE-CChhHH
Confidence 3578999885 998544
No 158
>PRK13411 molecular chaperone DnaK; Provisional
Probab=40.41 E-value=60 Score=36.87 Aligned_cols=65 Identities=17% Similarity=0.103 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCCCCCCcHHHHHHHHHHH
Q 039172 343 LEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGVMVAWTGIE 412 (477)
Q Consensus 343 L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~~~ctDNGamIa~ag~~ 412 (477)
+.+.+.++++.+.-....++.|++.||-+.-..+++.+.+.+.. .++. .....|-+++.|+|-+-
T Consensus 310 ~~~~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~--~~~~---~~~npdeaVA~GAAi~a 374 (653)
T PRK13411 310 TIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGG--KQPD---RSVNPDEAVALGAAIQA 374 (653)
T ss_pred HHHHHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCC--cCcC---CCCCchHHHHHHHHHHH
Confidence 44445555542211112367899999999999999999987532 1222 22456888998877543
No 159
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination ; PDB: 3AGK_A 2VGN_A 2VGM_A 3J16_A 3IZQ 3IR9_A 3OBW_A 3MCA_B 2QI2_A 3E1Y_D ....
Probab=40.29 E-value=89 Score=27.73 Aligned_cols=81 Identities=23% Similarity=0.369 Sum_probs=38.8
Q ss_pred cEEEEEecccccceEEEEecCCeEEEEeeehhhhhhhhc--CCccch-hcHHHHHHhHHHHHHHHHHHC-CCCCCCcCEE
Q 039172 73 LIILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKY--GGVAPK-MAEEAHSLAIDPVVQEALHKA-NLTERDLSAV 148 (477)
Q Consensus 73 m~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~--gGv~P~-~a~~~H~~~l~~~i~~~L~~a-gi~~~did~I 148 (477)
..++.||. +...+|++...+-.+-..+.+. +..+. ||.-.. +...+..+.....|-+.+.+. =....+++.|
T Consensus 2 v~~v~id~--g~A~i~~l~~~~~~~~~~i~~~--ip~K~~~Gg~s~~rf~r~~~~~~f~~~i~~~l~~~f~~~~~~~~~i 77 (133)
T PF03464_consen 2 VGIVVIDE--GEANICLLRGYGTEILQRIESN--IPGKHKKGGQSQRRFEREKALEKFFKEIAEALKKYFLVNFDDVKCI 77 (133)
T ss_dssp EEEEEEET--TEEEEEEEETTEEEEEEEEE-G--HCCCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHCCCHTTTCSEE
T ss_pred EEEEEEeC--CCEEEEEEcCCEEEEEEEEEec--CCCccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccEE
Confidence 34677887 6778899986553333333221 22222 443211 001122233332222222221 0334689999
Q ss_pred EEecCCCcch
Q 039172 149 AVTIGPGLSL 158 (477)
Q Consensus 149 Avt~GPG~~t 158 (477)
.+. |||...
T Consensus 78 Iia-GPGf~k 86 (133)
T PF03464_consen 78 IIA-GPGFTK 86 (133)
T ss_dssp EEE-ESTTHH
T ss_pred EEE-CCHHHH
Confidence 887 999654
No 160
>PRK12408 glucokinase; Provisional
Probab=39.60 E-value=65 Score=33.29 Aligned_cols=99 Identities=14% Similarity=0.100 Sum_probs=60.2
Q ss_pred CCcEEEEEecccccceEEEEecCCeE------EEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCC
Q 039172 71 DDLIILGIETSCDDTAAAVVRGNGEI------LSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERD 144 (477)
Q Consensus 71 ~~m~iLgIeTS~ddtsvAlv~~dg~i------l~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~d 144 (477)
++-.+|++|-....+.++++|.++++ +..... |.. -.+.+..++++.+++ . .+
T Consensus 14 ~~~~~L~~DIGGT~i~~al~d~~g~~~~~~~~~~~~~~-------------~t~----~~~~~~~~i~~~~~~-~---~~ 72 (336)
T PRK12408 14 RPESFVAADVGGTHVRVALVCASPDAAKPVELLDYRTY-------------RCA----DYPSLAAILADFLAE-C---AP 72 (336)
T ss_pred ccccEEEEEcChhhhheeEEeccCCccccccccceeEe-------------cCC----CccCHHHHHHHHHhc-C---CC
Confidence 44458999999999999999866653 222111 100 112345567777765 2 25
Q ss_pred cCEEEEecCCCc-c-h------hhHHHHHHHHHHHhhcCCC-EEEeccHHHHHHHHH
Q 039172 145 LSAVAVTIGPGL-S-L------CLRVGVQKARKIAGQFNLP-IVGVHHMEAHALVAR 192 (477)
Q Consensus 145 id~IAvt~GPG~-~-t------~LrvG~~~Ak~La~~~~~P-li~V~H~~AHa~sa~ 192 (477)
+++|++.. ||. . + .+--. ...+.|...+++| +.-+|=..|.+++-.
T Consensus 73 ~~~igIg~-pG~~~~~g~v~~~nl~w~-~~~~~l~~~~~~~~V~l~ND~naaa~gE~ 127 (336)
T PRK12408 73 VRRGVIAS-AGYALDDGRVITANLPWT-LSPEQIRAQLGLQAVHLVNDFEAVAYAAP 127 (336)
T ss_pred cCEEEEEe-cCCceECCEEEecCCCCc-cCHHHHHHHcCCCeEEEeecHHHHHcccc
Confidence 77777763 332 1 1 11100 1457788889996 999998888877643
No 161
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=39.45 E-value=1.4e+02 Score=30.84 Aligned_cols=70 Identities=19% Similarity=0.297 Sum_probs=49.5
Q ss_pred EEEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCC-cCEEEEe
Q 039172 74 IILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERD-LSAVAVT 151 (477)
Q Consensus 74 ~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~d-id~IAvt 151 (477)
.+.|+|....-+-+.+++++++++....-.- . ..|. +| ...-.+.|..+|+++++++|+..++ +..+++.
T Consensus 4 ~y~GvEGgaT~s~~Vivd~~~~~~~~a~~~~-T--nh~~--ig---~~~~~~rie~~i~~A~~k~g~d~~~~lr~lgL~ 74 (336)
T KOG1794|consen 4 FYGGVEGGATCSRLVIVDEDGTILGRAVGGG-T--NHWL--IG---STTCASRIEDMIREAKEKAGWDKKGPLRSLGLG 74 (336)
T ss_pred eeEeecCCcceeEEEEECCCCCEeeEeeccc-c--cccc--CC---chHHHHHHHHHHHHHHhhcCCCccCccceeeee
Confidence 5789999888888888998999887654211 1 1222 12 2233467888999999999999888 7777655
No 162
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=39.30 E-value=27 Score=29.99 Aligned_cols=31 Identities=16% Similarity=0.422 Sum_probs=25.9
Q ss_pred EEEEchhHhhHHHHHHHHHHHHcCCCEEEcCC
Q 039172 364 LVVSGGVASNKYVRARLDRAVKNNSLQLVCPP 395 (477)
Q Consensus 364 lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp 395 (477)
|+++|| +.-+.+.+++++.++++|+++.+-.
T Consensus 5 l~C~~G-aSSs~la~km~~~a~~~gi~~~i~a 35 (99)
T cd05565 5 VLCAGG-GTSGLLANALNKGAKERGVPLEAAA 35 (99)
T ss_pred EECCCC-CCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 566666 9999999999999999999876653
No 163
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=39.22 E-value=1.5e+02 Score=30.42 Aligned_cols=77 Identities=12% Similarity=0.131 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cC-CCCc-EEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCCCCCCcHHH
Q 039172 328 RANIAASFQRVAVLHLEERCERAIEWALK-IE-PSIK-HLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGV 404 (477)
Q Consensus 328 ~~dIAasfQ~av~~~L~~~~~ral~~~~~-~~-~~~~-~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~~~ctDNGa 404 (477)
.+++...++. ..+.+++.+.+.++.+.. .. ..++ .|+++||.+.=..+++.+.+.+ +.++.+.. --|.++
T Consensus 241 ~~~~~eii~~-~~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~---~~~v~~~~---~P~~av 313 (336)
T PRK13928 241 SEEIREALKE-PVSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEET---KVPVYIAE---DPISCV 313 (336)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHH---CCCceecC---CHHHHH
Confidence 4455444443 234455566666653321 01 1133 6999999999889999998876 34554443 235667
Q ss_pred HHHHHHH
Q 039172 405 MVAWTGI 411 (477)
Q Consensus 405 mIa~ag~ 411 (477)
++|++-+
T Consensus 314 a~Gaa~~ 320 (336)
T PRK13928 314 ALGTGKM 320 (336)
T ss_pred HHHHHHH
Confidence 7776654
No 164
>TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases. This model represents a large family of enzymes which catalyze the thiolysis of a linear fatty acid CoA (or acetoacetyl-CoA) using a second CoA molecule to produce acetyl-CoA and a CoA-ester product two carbons shorter (or, alternatively, the condensation of two molecules of acetyl-CoA to produce acetoacetyl-CoA and CoA). This enzyme is also known as "thiolase", "3-ketoacyl-CoA thiolase", "beta-ketothiolase" and "Fatty oxidation complex beta subunit". When catalyzing the degradative reaction on fatty acids the corresponding EC number is 2.3.1.16. The condensation reaction corresponds to 2.3.1.9. Note that the enzymes which catalyze the condensation are generally not involved in fatty acid biosynthesis, which is carried out by a decarboxylating condensation of acetyl and malonyl esters of acyl carrier proteins. Rather, this activity may produce acetoacetyl-CoA for pathways such as IPP biosynthesis in the absence of sufficient fatt
Probab=39.05 E-value=42 Score=35.37 Aligned_cols=29 Identities=17% Similarity=0.100 Sum_probs=24.2
Q ss_pred HHhHHHHHHHHHHHCCCCCCCcCEEEEec
Q 039172 124 SLAIDPVVQEALHKANLTERDLSAVAVTI 152 (477)
Q Consensus 124 ~~~l~~~i~~~L~~agi~~~did~IAvt~ 152 (477)
.+....+++++|+++|++++|||.|.+..
T Consensus 22 ~~La~~A~~~Al~dAgl~~~dID~vv~g~ 50 (386)
T TIGR01930 22 EDLGAAVIKELLERNPLDPELIDDVIFGN 50 (386)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence 34456789999999999999999998754
No 165
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=38.45 E-value=2.9e+02 Score=25.29 Aligned_cols=76 Identities=24% Similarity=0.329 Sum_probs=48.4
Q ss_pred CCCcEEEEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEE
Q 039172 70 KDDLIILGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVA 149 (477)
Q Consensus 70 ~~~m~iLgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IA 149 (477)
.+...|.|||-. ..+++|++|-+|+++.-....+. . ...+|+.+. +.| ..=.||
T Consensus 29 ~~~~lIVGiDPG-~ttgiAildL~G~~l~l~S~R~~--------------~------~~evi~~I~-~~G----~PviVA 82 (138)
T PF04312_consen 29 SRRYLIVGIDPG-TTTGIAILDLDGELLDLKSSRNM--------------S------RSEVIEWIS-EYG----KPVIVA 82 (138)
T ss_pred CCCCEEEEECCC-ceeEEEEEecCCcEEEEEeecCC--------------C------HHHHHHHHH-HcC----CEEEEE
Confidence 366789999985 57899999999998865432211 1 123454443 345 345677
Q ss_pred EecCCCcchhhHHHHHHHHHHHhhcCCCEE
Q 039172 150 VTIGPGLSLCLRVGVQKARKIAGQFNLPIV 179 (477)
Q Consensus 150 vt~GPG~~t~LrvG~~~Ak~La~~~~~Pli 179 (477)
.+..|=. .+.+.|+..++..++
T Consensus 83 tDV~p~P--------~~V~Kia~~f~A~ly 104 (138)
T PF04312_consen 83 TDVSPPP--------ETVKKIARSFNAVLY 104 (138)
T ss_pred ecCCCCc--------HHHHHHHHHhCCccc
Confidence 7777643 345777777776553
No 166
>PRK06954 acetyl-CoA acetyltransferase; Provisional
Probab=38.40 E-value=41 Score=35.67 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=23.9
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEec
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVTI 152 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt~ 152 (477)
+....+++++|+++|++++|||.|.+..
T Consensus 33 eL~~~a~~~aL~~Agi~~~dID~vi~G~ 60 (397)
T PRK06954 33 QLGAAAIAAAVERAGLKPEQIDEVVMGC 60 (397)
T ss_pred HHHHHHHHHHHHHcCCCHHHcCEEEEEe
Confidence 4446789999999999999999998864
No 167
>cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=38.05 E-value=34 Score=35.97 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=24.6
Q ss_pred HHhHHHHHHHHHHHCCCCCCCcCEEEEecC
Q 039172 124 SLAIDPVVQEALHKANLTERDLSAVAVTIG 153 (477)
Q Consensus 124 ~~~l~~~i~~~L~~agi~~~did~IAvt~G 153 (477)
.+....+++++|+++|++++|||.|.+...
T Consensus 23 ~~La~~A~~~AL~dAgl~~~dID~vi~~~~ 52 (386)
T cd00751 23 DDLGAAVIKALLERAGLDPEEVDDVIMGNV 52 (386)
T ss_pred HHHHHHHHHHHHHhcCCCHHHCCEEEEEec
Confidence 344567899999999999999999988643
No 168
>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=37.91 E-value=45 Score=34.00 Aligned_cols=58 Identities=10% Similarity=-0.020 Sum_probs=34.6
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEec-CCCcchhhHHHHHHHHHHHhhcCCCEEEecc
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVTI-GPGLSLCLRVGVQKARKIAGQFNLPIVGVHH 183 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt~-GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~H 183 (477)
+....+++++|+++|+.++|||.|.+.. .|+.+.. ......++.|....+++.+.|++
T Consensus 63 ~la~~Aa~~aL~~ag~~~~~Id~li~~s~~~~~~~p-~~a~~v~~~lgl~~~~~~~~v~~ 121 (338)
T PRK09258 63 DGAIAAGRKALAEAGIDPSDIGLLINTSVCRDYLEP-ATACRVHHNLGLPKSCANFDVSN 121 (338)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCC-hHHHHHHHHcCCCCCCceeehhh
Confidence 3445789999999999999999997643 4554432 11222333332222345566643
No 169
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=37.70 E-value=58 Score=28.94 Aligned_cols=54 Identities=24% Similarity=0.446 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHCCCCCCCcCEEEEecCCCc---chhhHHHHHHHHHHHhhcCCCEEEeccH
Q 039172 126 AIDPVVQEALHKANLTERDLSAVAVTIGPGL---SLCLRVGVQKARKIAGQFNLPIVGVHHM 184 (477)
Q Consensus 126 ~l~~~i~~~L~~agi~~~did~IAvt~GPG~---~t~LrvG~~~Ak~La~~~~~Pli~V~H~ 184 (477)
.-..++++.+++.+++++||-.|-+|.-|-+ |++ .+|+.+...-++|++..+.+
T Consensus 21 at~eLl~~i~~~N~l~~edivSv~FT~T~DL~a~FPA-----~aaR~~~~~~~Vplmc~qE~ 77 (117)
T cd02185 21 ATRELLEEIIERNNIKPEDIISVIFTVTPDLDAAFPA-----KAARELGGWKYVPLMCAQEM 77 (117)
T ss_pred HHHHHHHHHHHHcCCCHHHEEEEEEEeCCcccccChH-----HHHHhcCCCCCcceeecCcC
Confidence 3445788889999999999999999998876 443 45565543337888876654
No 170
>PRK12408 glucokinase; Provisional
Probab=37.36 E-value=1.5e+02 Score=30.63 Aligned_cols=48 Identities=6% Similarity=0.182 Sum_probs=26.1
Q ss_pred CCcE-EEEEchhHhh--HHHHHH--HHHHHHcC-------CCEEEcCCCCCCCcHHHHHHHHHH
Q 039172 360 SIKH-LVVSGGVASN--KYVRAR--LDRAVKNN-------SLQLVCPPPSLCTDNGVMVAWTGI 411 (477)
Q Consensus 360 ~~~~-lvlsGGVA~N--~~Lr~~--L~~~~~~~-------g~~l~~Pp~~~ctDNGamIa~ag~ 411 (477)
+... |+++|||+.+ ..+.+. +++..++. .++++.... .| +.++|++.+
T Consensus 271 dPe~GIvIGGGIs~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~I~~~~~---~~-agl~GAa~~ 330 (336)
T PRK12408 271 GARGGVYLAGGILPQIADFLARSDFVERFLNKGPMRPALEQVPVKLVEH---GQ-LGVLGAASW 330 (336)
T ss_pred CCCceEEEECchhHhHHhhhcCHHHHHHHhccCchhhHhcCCCEEEEeC---CC-hHHHHHHHH
Confidence 4455 9999999865 444443 55544432 122333321 24 566887643
No 171
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=37.26 E-value=80 Score=30.25 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHCCCCCCCcCEEEEec
Q 039172 126 AIDPVVQEALHKANLTERDLSAVAVTI 152 (477)
Q Consensus 126 ~l~~~i~~~L~~agi~~~did~IAvt~ 152 (477)
....+++++|+++|++++|||.|.+..
T Consensus 10 l~~~A~~~al~~ag~~~~~i~~li~~~ 36 (254)
T cd00327 10 LGFEAAEQAIADAGLSKGPIVGVIVGT 36 (254)
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEEEE
Confidence 345688999999999999999998764
No 172
>cd00828 elong_cond_enzymes "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases.They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues.
Probab=37.13 E-value=53 Score=34.42 Aligned_cols=66 Identities=21% Similarity=0.204 Sum_probs=37.8
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEecCCCcchhhHHHHH-HHHHHHhh-cCCCEEEeccHHHHHHHH
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVTIGPGLSLCLRVGVQ-KARKIAGQ-FNLPIVGVHHMEAHALVA 191 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt~GPG~~t~LrvG~~-~Ak~La~~-~~~Pli~V~H~~AHa~sa 191 (477)
+.+..+++++|+++|++++|||.|- ..|.|...+=..=.. ..+.+... ..+|+..+-...+|..++
T Consensus 274 ~~~~~a~~~Al~~Agi~~~dId~i~-~hgtgt~~~D~~E~~ai~~~~~~~~~~~~v~s~K~~~Gh~~~A 341 (407)
T cd00828 274 KGIARAIRTALAKAGLSLDDLDVIS-AHGTSTPANDVAESRAIAEVAGALGAPLPVTAQKALFGHSKGA 341 (407)
T ss_pred HHHHHHHHHHHHHcCCCHHHcCEEe-cccccCccccHHHHHHHHHHHhccCCCceeecccchhccchhh
Confidence 3455689999999999999999884 446654322111111 11111110 135666666666666543
No 173
>cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.
Probab=36.86 E-value=49 Score=34.22 Aligned_cols=56 Identities=14% Similarity=0.189 Sum_probs=35.2
Q ss_pred HHHHHHHHHHCCCCCCCcCEEEEecCCCcchhhHHHHHHHHHHHhhcCCCEEEeccH
Q 039172 128 DPVVQEALHKANLTERDLSAVAVTIGPGLSLCLRVGVQKARKIAGQFNLPIVGVHHM 184 (477)
Q Consensus 128 ~~~i~~~L~~agi~~~did~IAvt~GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~H~ 184 (477)
..+.+++|+++|++++|||.|.+....+... -.....+++.|....+++.+.|+++
T Consensus 90 ~~Aa~~aL~~a~~~~~~Id~li~~s~~~~~~-P~~a~~i~~~lgl~~~~~~~dv~~~ 145 (361)
T cd00831 90 EEAARGALDEAGLRPSDIDHLVVNTSTGNPT-PSLDAMLINRLGLRPDVKRYNLGGM 145 (361)
T ss_pred HHHHHHHHHHhCCCHHHCCEEEEECCCCCCC-CCHHHHHHHHhCCCcccchhccccc
Confidence 4688999999999999999998765555322 1122234444443334555566643
No 174
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=36.68 E-value=2.6e+02 Score=24.97 Aligned_cols=86 Identities=17% Similarity=0.165 Sum_probs=50.1
Q ss_pred EEEecccccceEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEe----
Q 039172 76 LGIETSCDDTAAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVT---- 151 (477)
Q Consensus 76 LgIeTS~ddtsvAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt---- 151 (477)
||||-...-+++|+-|..+.+ +.-... ++.... ......+.+++++.+ ++.|++.
T Consensus 1 laiD~G~kriGvA~~d~~~~~-a~pl~~-----------i~~~~~----~~~~~~l~~~i~~~~-----~~~iVvGlP~~ 59 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDITGWT-AQGIPT-----------IKAQDG----EPDWSRIEELLKEWT-----PDKIVVGLPLN 59 (130)
T ss_pred CeEccCCCeEEEEEECCCCCE-EeceEE-----------EEecCC----cHHHHHHHHHHHHcC-----CCEEEEeccCC
Confidence 689999999999988865533 321111 000000 122345556666543 6788887
Q ss_pred -cCCCcchhhHHHHHHHHHHHhhcCCCEEEecc
Q 039172 152 -IGPGLSLCLRVGVQKARKIAGQFNLPIVGVHH 183 (477)
Q Consensus 152 -~GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~H 183 (477)
.|=-...+ +....|++.|...+++|+.-++.
T Consensus 60 ~dG~~~~~a-~~v~~f~~~L~~~~~~~v~~~DE 91 (130)
T TIGR00250 60 MDGTEGPLT-ERAQKFANRLEGRFGVPVVLWDE 91 (130)
T ss_pred CCcCcCHHH-HHHHHHHHHHHHHhCCCEEEEcC
Confidence 33222222 23346888888888999988863
No 175
>PRK07850 acetyl-CoA acetyltransferase; Provisional
Probab=36.47 E-value=52 Score=34.83 Aligned_cols=59 Identities=8% Similarity=0.022 Sum_probs=35.1
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEecCCCcch-hhHHHHHHHHHHHhhcCCCEEEecc
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVTIGPGLSL-CLRVGVQKARKIAGQFNLPIVGVHH 183 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt~GPG~~t-~LrvG~~~Ak~La~~~~~Pli~V~H 183 (477)
+....+++++|+++|++++|||.|.+...-.... +..++-..+..+....++|.+.|+.
T Consensus 28 eL~~~a~~~aL~~agi~~~~Id~v~~G~~~~~~~q~~~~ar~~~l~~Gl~~~~p~~tV~~ 87 (387)
T PRK07850 28 ELLGAVQRAVLDRAGIDPGDVEQVIGGCVTQAGEQSNNITRTAWLHAGLPYHVGATTIDC 87 (387)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEeccccccccchHHHHHHHhCCCCCCCceEEEec
Confidence 3445789999999999999999999875321111 1112212222222222477788864
No 176
>PLN02287 3-ketoacyl-CoA thiolase
Probab=36.44 E-value=48 Score=35.96 Aligned_cols=29 Identities=17% Similarity=0.324 Sum_probs=24.1
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEecC
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVTIG 153 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt~G 153 (477)
+....+++++|+++|++++|||.|.+...
T Consensus 73 eLa~eA~~~AL~dAgl~~~dID~vv~G~~ 101 (452)
T PLN02287 73 DLLAPVLKAVVEKTGLNPSEVGDIVVGTV 101 (452)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEee
Confidence 44457899999999999999999987544
No 177
>PLN02644 acetyl-CoA C-acetyltransferase
Probab=36.25 E-value=52 Score=34.82 Aligned_cols=29 Identities=17% Similarity=0.061 Sum_probs=24.2
Q ss_pred HHhHHHHHHHHHHHCCCCCCCcCEEEEec
Q 039172 124 SLAIDPVVQEALHKANLTERDLSAVAVTI 152 (477)
Q Consensus 124 ~~~l~~~i~~~L~~agi~~~did~IAvt~ 152 (477)
.+....+++++|+++|++++|||.|.+..
T Consensus 26 ~~L~~~a~~~al~dAgl~~~~ID~vv~g~ 54 (394)
T PLN02644 26 TELGSIAIQAALERAGVDPALVQEVFFGN 54 (394)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence 34556789999999999999999998754
No 178
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=35.99 E-value=1.3e+02 Score=29.16 Aligned_cols=98 Identities=27% Similarity=0.412 Sum_probs=50.4
Q ss_pred CCcEEEEEecccc---cce--EEEEec--CCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCC
Q 039172 71 DDLIILGIETSCD---DTA--AAVVRG--NGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTER 143 (477)
Q Consensus 71 ~~m~iLgIeTS~d---dts--vAlv~~--dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~ 143 (477)
...+|-|+|.|.. +.+ ++++-+ +++++...... .++..+| +|-..+. .. .+.+.+++++.. .
T Consensus 24 ~~~~I~gvDiS~~~~~~~~vaa~Vv~~~~~~~~~~~~~~~-~~~~~PY---IPG~Laf---RE-~p~l~~~~~~l~---~ 92 (208)
T cd06559 24 EVRLVAGVDVSYKKDGDLAVAAAVVLDYPDLEVVETAVAV-GEVTFPY---IPGLLAF---RE-GPPLLEALEKLK---T 92 (208)
T ss_pred CccEEEEEEeeeccCCCeEEEEEEEEECCCCcEEEEEEEE-EecCCCC---cchhHHH---hh-HHHHHHHHHhCC---C
Confidence 3457999999875 222 222222 56666544322 1222233 2322221 11 234555666544 3
Q ss_pred CcCEEEEecCCCcchhhHHHHHHHHHHHhhcCCCEEEec
Q 039172 144 DLSAVAVTIGPGLSLCLRVGVQKARKIAGQFNLPIVGVH 182 (477)
Q Consensus 144 did~IAvt~GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~ 182 (477)
..|.|.|+ |=|..=--|.|++ --|...+++|.|||-
T Consensus 93 ~PDlilVD-G~G~~HpR~~GlA--~HlGv~l~~PtIGVA 128 (208)
T cd06559 93 KPDLLLVD-GHGIAHPRRFGLA--SHLGVLLDLPTIGVA 128 (208)
T ss_pred CCCEEEEe-CCccccCCCcchh--heeeeecCCCEEEEE
Confidence 67888887 3333222233433 345667889999984
No 179
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=35.79 E-value=43 Score=35.97 Aligned_cols=74 Identities=8% Similarity=0.136 Sum_probs=44.5
Q ss_pred EEEecccccceEEEEecC---CeEEEEeeehhhhhhhhcCCccchhcHH-HHHHhHHHHHHHHHHHCCCCCCCcCEEEEe
Q 039172 76 LGIETSCDDTAAAVVRGN---GEILSQVVSSQADLLAKYGGVAPKMAEE-AHSLAIDPVVQEALHKANLTERDLSAVAVT 151 (477)
Q Consensus 76 LgIeTS~ddtsvAlv~~d---g~il~~~~~sq~~~h~~~gGv~P~~a~~-~H~~~l~~~i~~~L~~agi~~~did~IAvt 151 (477)
||||-.+..+.+++++.+ ++++..... +.+-+.+|..... ...+.+...+.++++++.-...+|.+|+++
T Consensus 1 ~aiD~Gtt~~k~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~~~~i~~Igis 74 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYENECQKLTLEEIH------RFKNGLVSQNGHECWDIDALEQEIRLGLNKVDAEGIAPDSIGID 74 (454)
T ss_pred CcEeccCCchheEEEEEcCCCceEEEEEEE------eCCCCCEeECCEEEEehHHHHHHHHHHHHHHhccCCCceEEEEe
Confidence 689999999999999976 466622222 2233444433222 222345566667777654444579999987
Q ss_pred c-CCC
Q 039172 152 I-GPG 155 (477)
Q Consensus 152 ~-GPG 155 (477)
. |.+
T Consensus 75 ~q~~~ 79 (454)
T TIGR02627 75 TWGVD 79 (454)
T ss_pred cccee
Confidence 4 444
No 180
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=35.71 E-value=48 Score=33.69 Aligned_cols=43 Identities=14% Similarity=0.136 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHCCCCCCCcCEEEEecCCCcchhhHHHHHHHHHHHhhcCCC
Q 039172 126 AIDPVVQEALHKANLTERDLSAVAVTIGPGLSLCLRVGVQKARKIAGQFNLP 177 (477)
Q Consensus 126 ~l~~~i~~~L~~agi~~~did~IAvt~GPG~~t~LrvG~~~Ak~La~~~~~P 177 (477)
.+..+++++|+++|++++|||.+.+-.+ + . .+.+.+...+++|
T Consensus 231 ~~~~~i~~~L~~~gl~~~did~~~~H~~-~----~----~~~~~i~~~l~l~ 273 (329)
T PRK07204 231 YLMKFIDKLLMDAGYTLADIDLIVPHQA-S----G----PAMRLIRKKLGVD 273 (329)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEeCCC-C----H----HHHHHHHHHcCCC
Confidence 4668999999999999999999976542 2 1 2334555666665
No 181
>PRK08131 acetyl-CoA acetyltransferase; Provisional
Probab=35.34 E-value=47 Score=35.36 Aligned_cols=55 Identities=16% Similarity=0.088 Sum_probs=35.2
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEecC-CCcchhhHHHHHHHHHHHhhc----CCCEEEecc
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVTIG-PGLSLCLRVGVQKARKIAGQF----NLPIVGVHH 183 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt~G-PG~~t~LrvG~~~Ak~La~~~----~~Pli~V~H 183 (477)
+....+++++|+++|++++|||.+.+.+- ++.+.+. ..++..+... ++|.+.|+.
T Consensus 28 eL~~~a~~~al~~agi~~~~Id~v~~G~~~~~~~~~~----~~ar~~~~~~Glp~~~p~~tV~~ 87 (401)
T PRK08131 28 DLAATVIRRLLEKSGFPGDDIEDVILGCTNQAGEDSR----NVARNALLLAGLPVTVPGQTVNR 87 (401)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEeccccccccc----cHHHHHHHhcCCCCCCceeeeec
Confidence 44567899999999999999999988643 3323221 2233233333 356777765
No 182
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=35.23 E-value=2.1e+02 Score=29.46 Aligned_cols=77 Identities=12% Similarity=0.158 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-cC-CCCc-EEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCCCCCCcHHHH
Q 039172 329 ANIAASFQRVAVLHLEERCERAIEWALK-IE-PSIK-HLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGVM 405 (477)
Q Consensus 329 ~dIAasfQ~av~~~L~~~~~ral~~~~~-~~-~~~~-~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~~~ctDNGam 405 (477)
+++...+.+.+. .+.+.+.++++.+.. .. .-+. .|+|+||.+.=..+.+++.+.+ +.++.... --|.++.
T Consensus 245 ~~~~~~i~~~l~-~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~---~~~v~~~~---~P~~~Va 317 (335)
T PRK13929 245 KEIQGAMRESLL-HILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEI---VVPVHVAA---NPLESVA 317 (335)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHH---CCCceeCC---CHHHHHH
Confidence 444444444332 355566666664421 01 1234 5999999998888888888876 44554432 2355677
Q ss_pred HHHHHHH
Q 039172 406 VAWTGIE 412 (477)
Q Consensus 406 Ia~ag~~ 412 (477)
+|.+-+.
T Consensus 318 ~Ga~~~~ 324 (335)
T PRK13929 318 IGTGRSL 324 (335)
T ss_pred HHHHHHH
Confidence 7766553
No 183
>PRK08170 acetyl-CoA acetyltransferase; Provisional
Probab=34.76 E-value=56 Score=34.99 Aligned_cols=27 Identities=15% Similarity=0.121 Sum_probs=23.0
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEe
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVT 151 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt 151 (477)
+....+++++|+++|++++|||.|.+.
T Consensus 29 ~L~~~A~~~Al~dAgl~~~dID~vi~g 55 (426)
T PRK08170 29 DLAVAAGRALLNRQPFAPDDLDEVILG 55 (426)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence 444578999999999999999998875
No 184
>PLN03168 chalcone synthase; Provisional
Probab=34.62 E-value=68 Score=33.99 Aligned_cols=26 Identities=12% Similarity=0.180 Sum_probs=22.0
Q ss_pred HHHHHHHHHHCCCCCCCcCEEEEecC
Q 039172 128 DPVVQEALHKANLTERDLSAVAVTIG 153 (477)
Q Consensus 128 ~~~i~~~L~~agi~~~did~IAvt~G 153 (477)
..+.+++|+++|++++|||.|.+...
T Consensus 106 ~~Aa~~AL~~ag~~~~dId~lI~~T~ 131 (389)
T PLN03168 106 AEAAQKAIKEWGGRKSDITHIVFATT 131 (389)
T ss_pred HHHHHHHHHHcCCCHHHCCEEEEECC
Confidence 36888999999999999999976544
No 185
>PLN03169 chalcone synthase family protein; Provisional
Probab=33.97 E-value=48 Score=35.10 Aligned_cols=30 Identities=3% Similarity=-0.024 Sum_probs=24.2
Q ss_pred HHHHHHHHHHCCCCCCCcCEEEEecCCCcc
Q 039172 128 DPVVQEALHKANLTERDLSAVAVTIGPGLS 157 (477)
Q Consensus 128 ~~~i~~~L~~agi~~~did~IAvt~GPG~~ 157 (477)
..+.+++|+++|++++|||.|.+..-+++.
T Consensus 111 ~~Aa~~aL~~ag~~~~dId~lI~~t~t~~~ 140 (391)
T PLN03169 111 VEASLACIKEWGRPVSDITHLVYVSSSEAR 140 (391)
T ss_pred HHHHHHHHHHhCCCHHHCCEEEEECcCCCC
Confidence 368899999999999999987665556643
No 186
>PRK00292 glk glucokinase; Provisional
Probab=33.84 E-value=2.4e+02 Score=28.50 Aligned_cols=95 Identities=15% Similarity=0.163 Sum_probs=0.0
Q ss_pred CcEEEEEecccccceEEEEe-cCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHH-CCCCCCCcCEEE
Q 039172 72 DLIILGIETSCDDTAAAVVR-GNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHK-ANLTERDLSAVA 149 (477)
Q Consensus 72 ~m~iLgIeTS~ddtsvAlv~-~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~-agi~~~did~IA 149 (477)
+-.+||||-....+.+++++ ++++++...... ... .+.+..++++++++ .+. ++..|+
T Consensus 1 ~~~~lgiDIGgT~i~~~l~~~~~~~~~~~~~~~--------------~~~---~~~~~~~l~~~l~~~~~~---~~~gig 60 (316)
T PRK00292 1 MKPALVGDIGGTNARFALCDWANGEIEQIKTYA--------------TAD---YPSLEDAIRAYLADEHGV---QVRSAC 60 (316)
T ss_pred CceEEEEEcCccceEEEEEecCCCceeeeEEEe--------------cCC---CCCHHHHHHHHHHhccCC---CCceEE
Q ss_pred EecCCCcchh---------hHHHHHHHHHHHhhcCCC-EEEeccHHHHHHH
Q 039172 150 VTIGPGLSLC---------LRVGVQKARKIAGQFNLP-IVGVHHMEAHALV 190 (477)
Q Consensus 150 vt~GPG~~t~---------LrvG~~~Ak~La~~~~~P-li~V~H~~AHa~s 190 (477)
+.. ||.... .+. . .+.|...+++| ++-.|-..+.+++
T Consensus 61 Ig~-pG~vd~~~i~~~n~~w~~--~-~~~l~~~~~~p~v~l~ND~~aaalg 107 (316)
T PRK00292 61 FAI-AGPVDGDEVRMTNHHWAF--S-IAAMKQELGLDHLLLINDFTAQALA 107 (316)
T ss_pred EEE-eCcccCCEEEecCCCccc--C-HHHHHHHhCCCeEEEEecHHHHHcc
No 187
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=33.79 E-value=98 Score=35.15 Aligned_cols=64 Identities=16% Similarity=0.113 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCCCCCCcHHHHHHHHHHH
Q 039172 344 EERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGVMVAWTGIE 412 (477)
Q Consensus 344 ~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~~~ctDNGamIa~ag~~ 412 (477)
.+.+.++++.+.-....++.|++.||-+.-..+++.+.+.+... ++ ......|.++++|+|-+-
T Consensus 316 ~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~--~~---~~~~npdeaVA~GAa~~a 379 (653)
T PTZ00009 316 LQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGK--EP---CKSINPDEAVAYGAAVQA 379 (653)
T ss_pred HHHHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCC--CC---CCCCCcchHHhhhhhhhH
Confidence 33444555432211234789999999999999999999876422 11 223466888988876543
No 188
>PRK06519 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=33.68 E-value=51 Score=35.12 Aligned_cols=62 Identities=15% Similarity=0.178 Sum_probs=42.0
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEecCCCcchhhHHHHHHHHHHHhhcCCCEEEeccHHHHHHHH
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVTIGPGLSLCLRVGVQKARKIAGQFNLPIVGVHHMEAHALVA 191 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt~GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~H~~AHa~sa 191 (477)
..+...|+.+|+++|+ ++|||.|. ..|.|...+=+ .=++.|...++.|+-.+-.+.+|.+.+
T Consensus 280 ~~~~~am~~AL~~Agl-~~~IdyI~-ahgtgT~~~D~---~E~~Ai~~~f~~pvsS~Ks~~GH~l~A 341 (398)
T PRK06519 280 GDLEASLERLLKPAGG-LAAPTAVI-SGATGAHPATA---EEKAALEAALAGPVRGIGTLFGHTMEA 341 (398)
T ss_pred HHHHHHHHHHHHHCCC-cccCCEEE-eCCCCCCCccH---HHHHHHHHHcCCCccccchhhccchHH
Confidence 3456799999999999 79999985 44555322101 113345555678888888888887754
No 189
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=33.62 E-value=2.1e+02 Score=29.10 Aligned_cols=37 Identities=22% Similarity=0.405 Sum_probs=34.3
Q ss_pred CCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCC
Q 039172 359 PSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPP 395 (477)
Q Consensus 359 ~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp 395 (477)
.|.+-+++|=|..++..++++|.+.+++.|-++|+|.
T Consensus 85 ~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipS 121 (267)
T PRK13301 85 AGLDMIICSAGALADDALRARLIAAAEAGGARIRVPA 121 (267)
T ss_pred cCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeC
Confidence 4778899999999999999999999999999999997
No 190
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=33.46 E-value=1.3e+02 Score=29.26 Aligned_cols=96 Identities=23% Similarity=0.377 Sum_probs=48.2
Q ss_pred CcEEEEEeccc---ccceEE---EEe-cCCeEEEEeeehhhhhhhhcCCccch-hcHHHHHHhHHHHHHHHHHHCCCCCC
Q 039172 72 DLIILGIETSC---DDTAAA---VVR-GNGEILSQVVSSQADLLAKYGGVAPK-MAEEAHSLAIDPVVQEALHKANLTER 143 (477)
Q Consensus 72 ~m~iLgIeTS~---ddtsvA---lv~-~dg~il~~~~~sq~~~h~~~gGv~P~-~a~~~H~~~l~~~i~~~L~~agi~~~ 143 (477)
...|.|+|.|. .+.++| +++ .+.+++...... .+...+| +|- ++. ..+ +.+-++|++.. .
T Consensus 21 ~~~V~gvDvsy~~~~~~~~a~~Vv~~~~~~~~v~~~~~~-~~~~~PY---iPG~Laf----RE~-P~~l~~l~~l~---~ 88 (206)
T PF04493_consen 21 VRLVAGVDVSYSDRGDRAVAAAVVLDYPSLKVVEESYVI-VPVSFPY---IPGFLAF----REL-PCILEALEKLK---N 88 (206)
T ss_dssp -SEEEEEEEEEECCCCEEEEEEEEEETTTTEEEEEEEEE-EE--S-S---STT-GGG----GTH-HHHHHHHHTSS---S
T ss_pred cCEEEEEEEEEEcCCCeEEEEEEEEECCCCCeEEEEEEE-eccCcCc---cCCceeh----hhH-HHHHHHHHHhc---c
Confidence 35899999999 233222 233 366776655432 1233444 222 222 122 45557777655 3
Q ss_pred CcCEEEEecCCCcchhhHHHHHHHHHHHhhcCCCEEEec
Q 039172 144 DLSAVAVTIGPGLSLCLRVGVQKARKIAGQFNLPIVGVH 182 (477)
Q Consensus 144 did~IAvt~GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~ 182 (477)
+.|.|.|+ |=|..-.-+.|++ --|+..+++|.|||-
T Consensus 89 ~~dvilvD-G~G~~HpR~~GlA--~HlGv~l~iPtIGVA 124 (206)
T PF04493_consen 89 KPDVILVD-GHGILHPRRFGLA--SHLGVLLDIPTIGVA 124 (206)
T ss_dssp --SCEEEE-S-SSSSTTS--HH--HHHHHHHTS-EEEEE
T ss_pred cCCEEEEe-CceeecCCCcChh--heeeeccCCCEEEEe
Confidence 57788887 3343333234444 346677899999984
No 191
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=33.22 E-value=42 Score=28.26 Aligned_cols=31 Identities=16% Similarity=0.364 Sum_probs=24.9
Q ss_pred EEEEchhHhhHHHHHHHHHHHHcCCCEEEcCC
Q 039172 364 LVVSGGVASNKYVRARLDRAVKNNSLQLVCPP 395 (477)
Q Consensus 364 lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp 395 (477)
+|+++|++.. .+.+++++.++++|+++-+-.
T Consensus 4 ~~Cg~G~sTS-~~~~ki~~~~~~~~~~~~v~~ 34 (96)
T cd05564 4 LVCSAGMSTS-ILVKKMKKAAEKRGIDAEIEA 34 (96)
T ss_pred EEcCCCchHH-HHHHHHHHHHHHCCCceEEEE
Confidence 6788899888 567799999999998765554
No 192
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=32.33 E-value=80 Score=31.03 Aligned_cols=50 Identities=24% Similarity=0.334 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCC
Q 039172 339 AVLHLEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPP 396 (477)
Q Consensus 339 v~~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~ 396 (477)
+.+.+++.+.+.++ ..+++.|.+.||..+-.-.-+.+++.+ ++++|.|..
T Consensus 210 V~eKMAeIv~~hie-----~~~i~dl~lvGGac~~~g~e~~Fe~~l---~l~v~~P~~ 259 (277)
T COG4820 210 VYEKMAEIVARHIE-----GQGITDLWLVGGACMQPGVEELFEKQL---ALQVHLPQH 259 (277)
T ss_pred HHHHHHHHHHHHhc-----cCCCcceEEecccccCccHHHHHHHHh---ccccccCCC
Confidence 45556677777776 789999999999877777766666654 567777763
No 193
>PRK06840 hypothetical protein; Validated
Probab=31.97 E-value=62 Score=33.05 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHCCCCCCCcCEEEEec
Q 039172 126 AIDPVVQEALHKANLTERDLSAVAVTI 152 (477)
Q Consensus 126 ~l~~~i~~~L~~agi~~~did~IAvt~ 152 (477)
.+..+++++|+++|++++|||.+.+..
T Consensus 238 ~~~~~i~~~L~~~gl~~~did~~~~h~ 264 (339)
T PRK06840 238 NFLKVIREALRKSGYTPKDIDYLAILH 264 (339)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEECC
Confidence 356789999999999999999987654
No 194
>PRK06157 acetyl-CoA acetyltransferase; Validated
Probab=31.95 E-value=66 Score=34.12 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=24.7
Q ss_pred HHhHHHHHHHHHHHCCCCCCCcCEEEEec
Q 039172 124 SLAIDPVVQEALHKANLTERDLSAVAVTI 152 (477)
Q Consensus 124 ~~~l~~~i~~~L~~agi~~~did~IAvt~ 152 (477)
.+....+++++|+++|++++|||.|.++.
T Consensus 28 ~~L~~ea~~~AL~dagl~~~dID~v~vg~ 56 (398)
T PRK06157 28 EDLMVEAFLEALADAGIEPKDIDAAWFGT 56 (398)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence 34556789999999999999999998865
No 195
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=31.85 E-value=2.4e+02 Score=28.77 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=31.6
Q ss_pred EEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCCCCCCcHHHHHHHHHH
Q 039172 363 HLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGVMVAWTGI 411 (477)
Q Consensus 363 ~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~~~ctDNGamIa~ag~ 411 (477)
.|+++||-+.=..++++|.+.+ +.++..+.. -|.++..|++-+
T Consensus 282 ~IvL~GGss~ipgl~e~l~~~~---~~~v~~~~~---P~~~va~Ga~~~ 324 (333)
T TIGR00904 282 GIVLTGGGALLRNLDKLLSKET---GLPVIVADD---PLLCVAKGTGKA 324 (333)
T ss_pred CEEEECcccchhhHHHHHHHHH---CCCceecCC---hHHHHHHHHHHH
Confidence 6999999998899999998876 456665542 266677776655
No 196
>cd00826 nondecarbox_cond_enzymes nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=31.79 E-value=69 Score=33.94 Aligned_cols=58 Identities=16% Similarity=0.127 Sum_probs=34.0
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEecCCCcchhhHHHHH-HHHHHHhhcCCCEEEecc
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVTIGPGLSLCLRVGVQ-KARKIAGQFNLPIVGVHH 183 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt~GPG~~t~LrvG~~-~Ak~La~~~~~Pli~V~H 183 (477)
+....+++++|++++++++|||.|.+..-.+.+.+.-.+-. +...+ -..++|.+.|+.
T Consensus 25 el~~~a~~~Al~~agl~p~dID~vi~g~~~~~~~g~~~~~~~~~~~l-g~~~~p~~~V~~ 83 (393)
T cd00826 25 EAGAKAIAAALEPAGVAAGAVEEACLGQVLGAGEGQNCAQQAAMHAG-GLQEAPAIGMNN 83 (393)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEEccCCcccCcHHHHHHHHcC-CCCCCcEEEecc
Confidence 34456888999999999999998887653221111111111 11111 124578888864
No 197
>PRK09052 acetyl-CoA acetyltransferase; Provisional
Probab=31.66 E-value=69 Score=34.10 Aligned_cols=28 Identities=14% Similarity=0.168 Sum_probs=23.4
Q ss_pred HhHHHHHHHHHHHC-CCCCCCcCEEEEec
Q 039172 125 LAIDPVVQEALHKA-NLTERDLSAVAVTI 152 (477)
Q Consensus 125 ~~l~~~i~~~L~~a-gi~~~did~IAvt~ 152 (477)
+....+++++|+++ |++++|||.|.+..
T Consensus 33 eLa~~A~~~AL~~a~gl~~~dID~vi~g~ 61 (399)
T PRK09052 33 DLLAHVLRSAVAQVPGLDPKLIEDAIVGC 61 (399)
T ss_pred HHHHHHHHHHHHhccCcCHHHCCEEEEEe
Confidence 44457899999997 99999999998863
No 198
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=31.20 E-value=1.9e+02 Score=29.29 Aligned_cols=43 Identities=16% Similarity=0.054 Sum_probs=30.9
Q ss_pred EEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCCCCCCcHHHHHHHHHH
Q 039172 363 HLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGVMVAWTGI 411 (477)
Q Consensus 363 ~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~~~ctDNGamIa~ag~ 411 (477)
.|+++||-+.=..++++|.+.+ +.++..+. ..|.++.+|++-+
T Consensus 283 ~IvL~GG~s~ipg~~~~l~~~~---~~~v~~~~---~p~~ava~Ga~~~ 325 (335)
T PRK13930 283 GIVLTGGGALLRGLDKLLSEET---GLPVHIAE---DPLTCVARGTGKA 325 (335)
T ss_pred CEEEECchhcchhHHHHHHHHH---CCCceecC---CHHHHHHHHHHHH
Confidence 3999999999999999998876 34555543 2466677766544
No 199
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=31.12 E-value=77 Score=31.98 Aligned_cols=28 Identities=25% Similarity=0.246 Sum_probs=24.0
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEec
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVTI 152 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt~ 152 (477)
+.+..+++++|+++|++++|||.+++..
T Consensus 225 ~~~~~~i~~~L~~~g~~~~did~~~~h~ 252 (325)
T PRK12879 225 RTMPKGARQVLEKAGLTKDDIDWVIPHQ 252 (325)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEECC
Confidence 4466789999999999999999998763
No 200
>PLN03169 chalcone synthase family protein; Provisional
Probab=31.01 E-value=90 Score=33.05 Aligned_cols=47 Identities=19% Similarity=0.314 Sum_probs=32.3
Q ss_pred HHhHHHHHHHHHHHCCCCCCCcCEEEEecCCCcchhhHHHHHHHHHHHhhcCCC
Q 039172 124 SLAIDPVVQEALHKANLTERDLSAVAVTIGPGLSLCLRVGVQKARKIAGQFNLP 177 (477)
Q Consensus 124 ~~~l~~~i~~~L~~agi~~~did~IAvt~GPG~~t~LrvG~~~Ak~La~~~~~P 177 (477)
.++++.+++++|+++|++++|+|-+.+-.+||. . .+.+.+...+++|
T Consensus 280 ~~~~~~~i~~~L~~~gl~~~did~~~~v~Hq~n---~----~il~~v~~~Lgl~ 326 (391)
T PLN03169 280 EDNIEGFCKKLMKKAGLVEKDYNDLFWAVHPGG---P----AILNRLEKKLKLA 326 (391)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCcceEEecCCC---H----HHHHHHHHHcCCC
Confidence 456778899999999999999984433448874 2 3334455556665
No 201
>PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyse the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group [].; GO: 0016746 transferase activity, transferring acyl groups, 0009058 biosynthetic process; PDB: 3EUO_B 3EUT_C 3EUQ_D 3E1H_A 3AWK_A 3AWJ_A 2H84_A 3A5S_A 3A5Q_B 3A5R_A ....
Probab=30.92 E-value=1.2e+02 Score=29.88 Aligned_cols=62 Identities=13% Similarity=0.165 Sum_probs=39.7
Q ss_pred HHHHHHHHHCCCCCCCcCEEEEecCCCcchhhHHHHHHHHHHHhhcCCCEEEeccHHHHHHHH
Q 039172 129 PVVQEALHKANLTERDLSAVAVTIGPGLSLCLRVGVQKARKIAGQFNLPIVGVHHMEAHALVA 191 (477)
Q Consensus 129 ~~i~~~L~~agi~~~did~IAvt~GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~H~~AHa~sa 191 (477)
.+.+++|+++|+.++||+.|.++.-=|..+. -+=+.+++.|...-++.=+.|++|=+++...
T Consensus 106 ~Aa~~AL~~~g~~~~dIthlv~vs~TG~~~P-glD~~l~~~LgL~~~v~R~~i~~~GC~gg~~ 167 (226)
T PF00195_consen 106 EAARKALAEAGLDPSDITHLVTVSCTGIAAP-GLDARLINRLGLRPDVQRTPIFGMGCAGGAA 167 (226)
T ss_dssp HHHHHHHHHHTS-GGGECEEEEEESSSSECS--HHHHHHHHHT--TTSEEEEEES-GGGHHHH
T ss_pred HHHHHHHHHcCCCCcccceEEEEecCCcCCC-chhHHHHhcCCCCCCcEEEEEeccchhhHHH
Confidence 5778899999999999999997765554332 1223455666666666677788887766543
No 202
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=30.88 E-value=48 Score=28.62 Aligned_cols=30 Identities=10% Similarity=0.289 Sum_probs=24.3
Q ss_pred EEEEchhHhhHHHHHHHHHHHHcCCCEEEcC
Q 039172 364 LVVSGGVASNKYVRARLDRAVKNNSLQLVCP 394 (477)
Q Consensus 364 lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~P 394 (477)
+|+++|++.. .+.+++++.++++|+++-+-
T Consensus 6 lvCg~G~STS-lla~k~k~~~~e~gi~~~i~ 35 (104)
T PRK09590 6 IICAAGMSSS-MMAKKTTEYLKEQGKDIEVD 35 (104)
T ss_pred EECCCchHHH-HHHHHHHHHHHHCCCceEEE
Confidence 6778888666 88888999999999976654
No 203
>PLN02326 3-oxoacyl-[acyl-carrier-protein] synthase III
Probab=30.87 E-value=68 Score=33.62 Aligned_cols=43 Identities=21% Similarity=0.348 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHCCCCCCCcCEEEEecCCCcchhhHHHHHHHHHHHhhcCCC
Q 039172 126 AIDPVVQEALHKANLTERDLSAVAVTIGPGLSLCLRVGVQKARKIAGQFNLP 177 (477)
Q Consensus 126 ~l~~~i~~~L~~agi~~~did~IAvt~GPG~~t~LrvG~~~Ak~La~~~~~P 177 (477)
.++.+++++|+++|++++|||.+++..+ . ..+-+.++..+++|
T Consensus 281 ~~~~~i~~~L~~~gl~~~dId~~v~Hq~--n-------~~~~~~~~~~Lgl~ 323 (379)
T PLN02326 281 CVPQVIESALQKAGLTAESIDWLLLHQA--N-------QRIIDAVAQRLGIP 323 (379)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEECCC--C-------HHHHHHHHHHcCCC
Confidence 4667899999999999999999886643 1 12334556666665
No 204
>cd00832 CLF Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria. CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine.
Probab=30.76 E-value=83 Score=33.29 Aligned_cols=63 Identities=21% Similarity=0.288 Sum_probs=39.9
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEecCCCcchhhHHHHHHHHHHHhhc---CCCEEEeccHHHHHHHH
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVTIGPGLSLCLRVGVQKARKIAGQF---NLPIVGVHHMEAHALVA 191 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt~GPG~~t~LrvG~~~Ak~La~~~---~~Pli~V~H~~AHa~sa 191 (477)
+.+..+|+++|+++|++++|||.|. +.|.|...+=..=. ++|...+ .+|+..+-.+.+|...+
T Consensus 270 ~~~~~a~~~al~~ag~~~~~i~~v~-~hgtgt~~~D~~E~---~al~~~fg~~~~pv~s~K~~~Gh~~~a 335 (399)
T cd00832 270 PGLARAIRLALADAGLTPEDVDVVF-ADAAGVPELDRAEA---AALAAVFGPRGVPVTAPKTMTGRLYAG 335 (399)
T ss_pred HHHHHHHHHHHHHcCCCHHHccEEE-eccCcCCCCCHHHH---HHHHHHhCCCCCceeCCCchhcchHHH
Confidence 4566789999999999999999875 44666533322111 2222222 46776666677776643
No 205
>cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes. They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues.
Probab=30.71 E-value=69 Score=32.15 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=23.5
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEec
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVTI 152 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt~ 152 (477)
+....+++++|+++|++++|||.|.+..
T Consensus 50 ~l~~~a~~~aL~~ag~~~~~Id~li~~~ 77 (324)
T cd00827 50 TMAVEAARRALERAGIDPDDIGLLIVAT 77 (324)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEc
Confidence 3445789999999999999999998754
No 206
>PRK06365 acetyl-CoA acetyltransferase; Provisional
Probab=30.68 E-value=68 Score=34.50 Aligned_cols=33 Identities=15% Similarity=0.102 Sum_probs=25.6
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEecCCCcc
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVTIGPGLS 157 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt~GPG~~ 157 (477)
+....+++++|+++|++++|||.|++..-++.+
T Consensus 39 eL~~eA~~~Al~dagl~~~dID~vv~~~~~~~~ 71 (430)
T PRK06365 39 ERVKKAFDYAMNDAGLTLADIDGSVASYFSDHF 71 (430)
T ss_pred HHHHHHHHHHHHHcCCCHHHcCEEEEecccccc
Confidence 444578899999999999999998876544333
No 207
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=30.44 E-value=86 Score=31.82 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHCCCCCCCcCEEEEecC
Q 039172 126 AIDPVVQEALHKANLTERDLSAVAVTIG 153 (477)
Q Consensus 126 ~l~~~i~~~L~~agi~~~did~IAvt~G 153 (477)
....+.+++|+++|++++|||.|.++..
T Consensus 55 la~~Aa~~aL~~ag~~~~dId~li~~~~ 82 (329)
T PRK07204 55 MGAEAAKKAVEDAKLTLDDIDCIICASG 82 (329)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEECC
Confidence 3456889999999999999999887653
No 208
>PLN03172 chalcone synthase family protein; Provisional
Probab=30.39 E-value=1.4e+02 Score=31.74 Aligned_cols=42 Identities=7% Similarity=0.021 Sum_probs=27.3
Q ss_pred HHHHHHHHHHCCCCCCCcCEEE-EecCCCcchhhHHHHHHHHHHH
Q 039172 128 DPVVQEALHKANLTERDLSAVA-VTIGPGLSLCLRVGVQKARKIA 171 (477)
Q Consensus 128 ~~~i~~~L~~agi~~~did~IA-vt~GPG~~t~LrvG~~~Ak~La 171 (477)
..+.+++|+++|+.++|||.|. +|.-|-.+++ ....+++.|.
T Consensus 107 ~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~--~a~~l~~~LG 149 (393)
T PLN03172 107 KEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPG--ADYQLTKLLG 149 (393)
T ss_pred HHHHHHHHHHcCCCHHHCCEEEEEccCCCcCch--HHHHHHHHhC
Confidence 3678899999999999999875 4433323444 2333444443
No 209
>PRK11617 endonuclease V; Provisional
Probab=30.32 E-value=72 Score=31.46 Aligned_cols=96 Identities=21% Similarity=0.311 Sum_probs=48.7
Q ss_pred cEEEEEeccccc------ceEEEEe-cCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCc
Q 039172 73 LIILGIETSCDD------TAAAVVR-GNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDL 145 (477)
Q Consensus 73 m~iLgIeTS~dd------tsvAlv~-~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~di 145 (477)
-+|.|+|.|+.+ .++++++ .+.+++...... .+..-+| +|-+=+. .. .+.+-+++++.. .+.
T Consensus 30 ~~VaGvDvsy~~~~~~~~aa~Vvl~~~~~~~v~~~~~~-~~~~~PY---IPG~LaF---RE-~P~~l~al~~l~---~~P 98 (224)
T PRK11617 30 RLIAGADVGFEQGGEVTRAAIVVLKYPSLELVEYQVAR-IATTMPY---IPGFLSF---RE-YPALLAAWEQLS---QKP 98 (224)
T ss_pred cEEEEEEEEEcCCCceEEEEEEEEECCCCcEEEEEEEE-eccCCCc---CcchHHH---hh-HHHHHHHHHhcC---cCC
Confidence 479999999854 3334444 355666554332 1233344 3322111 12 244556676654 357
Q ss_pred CEEEEecCCCcchhhHHHHHHHHHHHhhcCCCEEEec
Q 039172 146 SAVAVTIGPGLSLCLRVGVQKARKIAGQFNLPIVGVH 182 (477)
Q Consensus 146 d~IAvt~GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~ 182 (477)
|.|.|+ |=|..---|.|++ --|...+++|.|||-
T Consensus 99 dlllvD-G~G~~HPR~~GlA--~HlGv~~~~PtIGVA 132 (224)
T PRK11617 99 DLVFVD-GHGIAHPRRLGVA--SHFGLLVDVPTIGVA 132 (224)
T ss_pred CEEEEc-CceeECCCCccee--eEEEeecCCCEEEEE
Confidence 777776 2222111122222 223456789999984
No 210
>PRK05790 putative acyltransferase; Provisional
Probab=30.24 E-value=65 Score=33.91 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=23.6
Q ss_pred HHhHHHHHHHHHHHCCCCCCCcCEEEEe
Q 039172 124 SLAIDPVVQEALHKANLTERDLSAVAVT 151 (477)
Q Consensus 124 ~~~l~~~i~~~L~~agi~~~did~IAvt 151 (477)
.+....+++++|+++|++++|||.|.+.
T Consensus 27 ~~La~~A~~~AL~dAgl~~~dID~vi~g 54 (393)
T PRK05790 27 VELGAIVIKAALERAGVPPEQVDEVIMG 54 (393)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCeEEEE
Confidence 3445678999999999999999999875
No 211
>PTZ00455 3-ketoacyl-CoA thiolase; Provisional
Probab=30.19 E-value=81 Score=34.08 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=24.6
Q ss_pred HHhHHHHHHHHHHHCCCCCCC--cCEEEEecC
Q 039172 124 SLAIDPVVQEALHKANLTERD--LSAVAVTIG 153 (477)
Q Consensus 124 ~~~l~~~i~~~L~~agi~~~d--id~IAvt~G 153 (477)
.+....+++++|+++|++++| ||.|.+...
T Consensus 49 ~eL~~~a~~~al~~agl~~~d~~ID~vi~G~~ 80 (438)
T PTZ00455 49 EELLATAIQGTLENTGLDGKAALVDKVVVGNF 80 (438)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCcCEEEEEec
Confidence 344567899999999999999 999987653
No 212
>PRK07851 acetyl-CoA acetyltransferase; Provisional
Probab=30.09 E-value=73 Score=33.92 Aligned_cols=29 Identities=21% Similarity=0.255 Sum_probs=23.8
Q ss_pred HHhHHHHHHHHHHHC-CCCCCCcCEEEEec
Q 039172 124 SLAIDPVVQEALHKA-NLTERDLSAVAVTI 152 (477)
Q Consensus 124 ~~~l~~~i~~~L~~a-gi~~~did~IAvt~ 152 (477)
.+....+++++|+++ |++++|||.|.+..
T Consensus 28 ~eL~~~A~~~AL~da~gl~~~dID~vv~g~ 57 (406)
T PRK07851 28 DDLAAQMVRAALDKVPALDPTDIDDLMLGC 57 (406)
T ss_pred HHHHHHHHHHHHHhccCCCHHHCCEEEEEc
Confidence 344567899999996 99999999998764
No 213
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=29.95 E-value=49 Score=27.92 Aligned_cols=31 Identities=10% Similarity=0.365 Sum_probs=24.5
Q ss_pred EEEEchhHhhHHHHHHHHHHHHcCCCEEEcCC
Q 039172 364 LVVSGGVASNKYVRARLDRAVKNNSLQLVCPP 395 (477)
Q Consensus 364 lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp 395 (477)
+++++|++.+ .+.+++++.++++|+++-+-.
T Consensus 8 l~C~~G~sSS-~l~~k~~~~~~~~gi~~~v~a 38 (95)
T TIGR00853 8 LLCAAGMSTS-LLVNKMNKAAEEYGVPVKIAA 38 (95)
T ss_pred EECCCchhHH-HHHHHHHHHHHHCCCcEEEEE
Confidence 6778888865 577999999999999776553
No 214
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=29.94 E-value=87 Score=31.35 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=23.2
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEec
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVTI 152 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt~ 152 (477)
+....+++++|+++|++++|||.|.++.
T Consensus 52 ~la~~A~~~al~~ag~~~~~Id~li~~~ 79 (320)
T cd00830 52 DLAVEAAKKALEDAGIDADDIDLIIVAT 79 (320)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEc
Confidence 3345788999999999999999998754
No 215
>PLN03170 chalcone synthase; Provisional
Probab=29.50 E-value=1e+02 Score=32.81 Aligned_cols=24 Identities=8% Similarity=0.177 Sum_probs=20.3
Q ss_pred HHHHHHHHHCCCCCCCcCEEEEec
Q 039172 129 PVVQEALHKANLTERDLSAVAVTI 152 (477)
Q Consensus 129 ~~i~~~L~~agi~~~did~IAvt~ 152 (477)
.+.+++|+++|++++|||.|.+..
T Consensus 112 ~Aa~~AL~~ag~~~~dId~lI~~T 135 (401)
T PLN03170 112 AAAQKAIKEWGQPKSKITHLVFCT 135 (401)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEEc
Confidence 678899999999999999875443
No 216
>PRK05788 cobalamin biosynthesis protein CbiG; Validated
Probab=29.46 E-value=1e+02 Score=31.80 Aligned_cols=51 Identities=22% Similarity=0.258 Sum_probs=37.2
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEecCCCcchhhHHHHHHHHHHHhhcCCCEEEec
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVTIGPGLSLCLRVGVQKARKIAGQFNLPIVGVH 182 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt~GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~ 182 (477)
+.+...++++|+++|++++.|+.||.-.-----.+| ..+|..+++|+..++
T Consensus 208 e~i~~ai~~~L~~~~i~~~~i~~iatid~K~~E~gL-------~~~a~~lg~pl~~~~ 258 (315)
T PRK05788 208 EEIAEAVERALEALNIDPRAVKAIASITLKKDEPGL-------LQLAEELGVPFITFS 258 (315)
T ss_pred HHHHHHHHHHHHHcCCCHHHccEEeeeeccCCCHHH-------HHHHHHhCCCeEEeC
Confidence 457788999999999999999999866321111122 356778899998876
No 217
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=29.25 E-value=2.3e+02 Score=28.74 Aligned_cols=43 Identities=16% Similarity=0.050 Sum_probs=30.5
Q ss_pred EEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCCCCCCcHHHHHHHHHH
Q 039172 363 HLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGVMVAWTGI 411 (477)
Q Consensus 363 ~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~~~ctDNGamIa~ag~ 411 (477)
.|+++||.+.=..+.++|.+.+. .++.++. .-|.++..|++-+
T Consensus 279 ~IvL~GG~s~ipgl~~~l~~~~~---~~v~~~~---~P~~ava~Ga~~~ 321 (334)
T PRK13927 279 GIVLTGGGALLRGLDKLLSEETG---LPVHVAE---DPLTCVARGTGKA 321 (334)
T ss_pred CEEEECchhhhhHHHHHHHHHHC---CCcEecC---CHHHHHHHHHHHH
Confidence 59999999999999999998763 4454443 1256666665544
No 218
>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=29.25 E-value=85 Score=31.93 Aligned_cols=29 Identities=7% Similarity=-0.081 Sum_probs=23.9
Q ss_pred HHhHHHHHHHHHHHCCCCCCCcCEEEEec
Q 039172 124 SLAIDPVVQEALHKANLTERDLSAVAVTI 152 (477)
Q Consensus 124 ~~~l~~~i~~~L~~agi~~~did~IAvt~ 152 (477)
...+..+++++|+++|++++|||.+++-.
T Consensus 238 ~~~~~~~~~~~L~~~g~~~~did~~i~H~ 266 (338)
T PRK09258 238 VELAVDTWEAFLAQLGWAVEQVDRVICHQ 266 (338)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEecCC
Confidence 34556789999999999999999988654
No 219
>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=29.12 E-value=79 Score=32.05 Aligned_cols=54 Identities=17% Similarity=0.099 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHCCCCCCCcCEEEE-ecCCCcc-hhhHHHHHHHHHHHhhcCCCEEEecc
Q 039172 127 IDPVVQEALHKANLTERDLSAVAV-TIGPGLS-LCLRVGVQKARKIAGQFNLPIVGVHH 183 (477)
Q Consensus 127 l~~~i~~~L~~agi~~~did~IAv-t~GPG~~-t~LrvG~~~Ak~La~~~~~Pli~V~H 183 (477)
...+.+++|+++|++++|||.|.+ |..|... .+. ....++.|... +.+.+.|++
T Consensus 56 a~~Aa~~aL~~ag~~~~~Id~li~~t~~~d~~~p~~--a~~v~~~Lg~~-~~~~~di~~ 111 (326)
T PRK05963 56 AASAGDMALSDAGIERSDIALTLLATSTPDHLLPPS--APLLAHRLGLQ-NSGAIDLAG 111 (326)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCcH--HHHHHHHhCCC-CCceeeccc
Confidence 346889999999999999999976 5666532 331 12233444321 345566654
No 220
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=29.04 E-value=85 Score=32.63 Aligned_cols=40 Identities=15% Similarity=0.260 Sum_probs=28.6
Q ss_pred cEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCC-CCCCCcHHH
Q 039172 362 KHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPP-PSLCTDNGV 404 (477)
Q Consensus 362 ~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp-~~~ctDNGa 404 (477)
+.++|+||.|.=..|.+.|.+.. ++++++.+ |..|.=+|+
T Consensus 275 ~GI~LtGGga~l~Gl~~~i~~~~---~~pV~va~~P~~~va~G~ 315 (326)
T PF06723_consen 275 NGIVLTGGGALLRGLDEYISEET---GVPVRVADDPLTAVARGA 315 (326)
T ss_dssp H-EEEESGGGGSBTHHHHHHHHH---SS-EEE-SSTTTHHHHHH
T ss_pred CCEEEEChhhhhccHHHHHHHHH---CCCEEEcCCHHHHHHHHH
Confidence 45999999999999999998876 68888876 444544444
No 221
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=28.92 E-value=62 Score=27.19 Aligned_cols=32 Identities=9% Similarity=0.237 Sum_probs=27.3
Q ss_pred EEEEchhHhhHHHHHHHHHHHHcCCCEEEcCC
Q 039172 364 LVVSGGVASNKYVRARLDRAVKNNSLQLVCPP 395 (477)
Q Consensus 364 lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp 395 (477)
+||+.|++....+..++++.++++|+++-+-.
T Consensus 7 vvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~ 38 (94)
T PRK10310 7 VACGGAVATSTMAAEEIKELCQSHNIPVELIQ 38 (94)
T ss_pred EECCCchhHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 67788999999999999999999999766543
No 222
>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=28.78 E-value=93 Score=31.52 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=23.3
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEe
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVT 151 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt 151 (477)
+.+...++++|+++|++++|||.+++.
T Consensus 227 ~~~~~~~~~~L~~~gl~~~did~~~~h 253 (326)
T PRK05963 227 RMMSGASQNVLASAAMTPQDIDRFFPH 253 (326)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEeC
Confidence 446678999999999999999999873
No 223
>cd00829 SCP-x_thiolase Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein.
Probab=28.66 E-value=81 Score=32.65 Aligned_cols=28 Identities=29% Similarity=0.268 Sum_probs=23.2
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEec
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVTI 152 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt~ 152 (477)
+....+++++|+++|++++|||.|.+..
T Consensus 18 eL~~~A~~~Al~dagl~~~~Id~vi~g~ 45 (375)
T cd00829 18 ELAAEAARAALDDAGLEPADIDAVVVGN 45 (375)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEec
Confidence 3445688999999999999999998754
No 224
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=28.53 E-value=83 Score=30.16 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=24.5
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEecCCCc
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVTIGPGL 156 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt~GPG~ 156 (477)
+.+...++++|+++|++++|+|.|.+. +++.
T Consensus 145 ~~~~~~i~~~l~~ag~~~~did~~~~h-~~~~ 175 (254)
T cd00327 145 EGLARAARKALEGAGLTPSDIDYVEAH-GTGT 175 (254)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEcc-CCcC
Confidence 345678899999999999999998654 4554
No 225
>TIGR02446 FadI fatty oxidation complex, beta subunit FadI. This subunit of the FadJI complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit, and YfcY. This protein is almost always located adjacent to FadJ (TIGR02440). The FadJI complex is needed for anaerobic beta-oxidation of short-chain fatty acids in E. coli.
Probab=28.46 E-value=57 Score=35.09 Aligned_cols=55 Identities=15% Similarity=0.036 Sum_probs=36.0
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEecCCCcchhhHHHHHHHHHHHhhcC----CCEEEecc
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVTIGPGLSLCLRVGVQKARKIAGQFN----LPIVGVHH 183 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt~GPG~~t~LrvG~~~Ak~La~~~~----~Pli~V~H 183 (477)
+....+++.+|+++++++++||.|.+..--+... +...++.++...+ +|.+.|+.
T Consensus 33 ~L~~~a~~~al~~agl~~~~Id~vi~G~~~~~~~----~~~~ar~~~l~aGl~~~~p~~~V~~ 91 (430)
T TIGR02446 33 DLGKMVVSELLARSEIDPKLIEQLVFGQVVQMPE----APNIAREIVLGTGMNVHTDAYSVTR 91 (430)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEeccCcCc----cchHHHHHHHhCCCCCCCchhhhhh
Confidence 3445789999999999999999999875332221 2235666554444 45566553
No 226
>PRK06840 hypothetical protein; Validated
Probab=28.01 E-value=85 Score=32.05 Aligned_cols=32 Identities=13% Similarity=0.035 Sum_probs=24.9
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEE-e-cCCCc
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAV-T-IGPGL 156 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAv-t-~GPG~ 156 (477)
+....+++++|+++|++++|||.|.+ + .+|+.
T Consensus 55 ~la~~Aa~~aL~~ag~~~~dId~li~~~~~~~~~ 88 (339)
T PRK06840 55 DMAIAAAKPALKQAGVDPAAIDVVIYIGSEHKDY 88 (339)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEeccCCCCC
Confidence 33457899999999999999999864 3 45654
No 227
>PRK09050 beta-ketoadipyl CoA thiolase; Validated
Probab=27.89 E-value=89 Score=33.31 Aligned_cols=59 Identities=7% Similarity=-0.065 Sum_probs=35.8
Q ss_pred HhHHHHHHHHHHH-CCCCCCCcCEEEEecCCCcch-hhHHHHHHHHHHHhhcCCCEEEecc
Q 039172 125 LAIDPVVQEALHK-ANLTERDLSAVAVTIGPGLSL-CLRVGVQKARKIAGQFNLPIVGVHH 183 (477)
Q Consensus 125 ~~l~~~i~~~L~~-agi~~~did~IAvt~GPG~~t-~LrvG~~~Ak~La~~~~~Pli~V~H 183 (477)
+....+++++|++ +|++++|||.|.+.+--+... +.-++..++..+....++|.+.|+.
T Consensus 28 ~L~~~a~~~al~~~agi~~~~Id~v~~G~~~~~~~~~~~~ar~~~~~~Gl~~~vP~~tV~~ 88 (401)
T PRK09050 28 DLGAVPLKALMARNPGVDWEAVDDVIYGCANQAGEDNRNVARMSALLAGLPVSVPGTTINR 88 (401)
T ss_pred HHHHHHHHHHHHhccCCCHHHCCEEEEEeccccccccchHHHHHHHHcCCCCCCceEEEec
Confidence 3445789999995 799999999999874321111 1222222333333334688888854
No 228
>PRK04262 hypothetical protein; Provisional
Probab=27.57 E-value=71 Score=32.96 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=24.0
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEe-cCCC
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVT-IGPG 155 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt-~GPG 155 (477)
+....+++++|+++|++++|||.|.+. ..|.
T Consensus 53 ~la~~Aa~~aL~~ag~~~~dId~li~~s~~~~ 84 (347)
T PRK04262 53 TIAVEAARNALKRAGIDPKEIGAVYVGSESHP 84 (347)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEecCCC
Confidence 344578999999999999999998654 3344
No 229
>PRK08947 fadA 3-ketoacyl-CoA thiolase; Reviewed
Probab=27.27 E-value=82 Score=33.30 Aligned_cols=58 Identities=10% Similarity=0.100 Sum_probs=33.9
Q ss_pred HHHHHHHHHHH-CCCCCCCcCEEEEecCCCcch-hhHHHHHHHHHHHhhcCCCEEEeccH
Q 039172 127 IDPVVQEALHK-ANLTERDLSAVAVTIGPGLSL-CLRVGVQKARKIAGQFNLPIVGVHHM 184 (477)
Q Consensus 127 l~~~i~~~L~~-agi~~~did~IAvt~GPG~~t-~LrvG~~~Ak~La~~~~~Pli~V~H~ 184 (477)
...+++.+|++ +|++++|||.|.+...+.... +..++...+..+....++|.+.|+..
T Consensus 31 ~~~~~~~al~~~agl~~~~Id~vi~g~~~~~~~~g~~~ar~~~~~~Gl~~~~p~~~V~~~ 90 (387)
T PRK08947 31 SAHLMRSLLARNPALDPAEIDDIIWGCVQQTLEQGFNIARNAALLAGIPHSVPAVTVNRL 90 (387)
T ss_pred HHHHHHHHHHhccCcChHHhCeEEEEeccccccccccHHHHHHHHcCCCCCCcceeeech
Confidence 34578999996 799999999999886543222 12222222222222223566777653
No 230
>cd00833 PKS polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations. PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits.
Probab=27.20 E-value=77 Score=33.09 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=25.3
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEecCCCcc
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVTIGPGLS 157 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt~GPG~~ 157 (477)
..+...++++|+++|++++|||.|.+. |.|..
T Consensus 279 ~~~~~a~~~al~~Agi~~~did~i~~h-gtgt~ 310 (421)
T cd00833 279 EAQAALIRRAYARAGVDPSDIDYVEAH-GTGTP 310 (421)
T ss_pred HHHHHHHHHHHHHhCCCHHHCcEEEee-CCCCC
Confidence 345578999999999999999998654 66643
No 231
>TIGR00748 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase, putative. Thus, although there is no experimental evidence supporting this name, the bioinformatics-based conclusion appears to be sound.
Probab=26.67 E-value=79 Score=32.73 Aligned_cols=28 Identities=25% Similarity=0.270 Sum_probs=23.0
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEec
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVTI 152 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt~ 152 (477)
+....+.+++|+++|++++|||.|.+..
T Consensus 52 ~la~~Aa~~aL~~agl~~~dID~li~~s 79 (345)
T TIGR00748 52 TIGVEAARNALKRAKIDPKDIGAVYVGS 79 (345)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence 3445688999999999999999997643
No 232
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=26.57 E-value=3.3e+02 Score=27.08 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=30.7
Q ss_pred CCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCC
Q 039172 359 PSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPP 395 (477)
Q Consensus 359 ~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp 395 (477)
.|..-++++-|..++..+.++|.+.+++.|..+++|+
T Consensus 84 ~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~s 120 (265)
T PRK13304 84 NGKDVIIMSVGALADKELFLKLYKLAKENNCKIYLPS 120 (265)
T ss_pred cCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeC
Confidence 3556677777777899999999999999999999865
No 233
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=26.49 E-value=1.1e+02 Score=27.21 Aligned_cols=54 Identities=24% Similarity=0.412 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHCCCCCCCcCEEEEecCCCc---chhhHHHHHHHHHHHhhcCCCEEEeccH
Q 039172 126 AIDPVVQEALHKANLTERDLSAVAVTIGPGL---SLCLRVGVQKARKIAGQFNLPIVGVHHM 184 (477)
Q Consensus 126 ~l~~~i~~~L~~agi~~~did~IAvt~GPG~---~t~LrvG~~~Ak~La~~~~~Pli~V~H~ 184 (477)
.-..++++.+++.+++++||-.|-+|.-|-+ |++ .+|+.+.--.++|++..+.+
T Consensus 21 at~eLl~~ii~~N~l~~edivSv~FT~T~DL~a~FPA-----~aaR~~~Gw~~Vplmc~qEm 77 (117)
T TIGR01796 21 AVAELLTELMERNELTPEDLISVIFTVTEDLHADFPA-----AAARGLPGWTDVPVMCAQEI 77 (117)
T ss_pred HHHHHHHHHHHHcCCCHHHEEEEEEEecCcccccChH-----HHHHhccCCCCcceeccCcC
Confidence 3345788889999999999999999988875 333 34444422236787765543
No 234
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=26.29 E-value=1.5e+02 Score=32.06 Aligned_cols=28 Identities=21% Similarity=0.484 Sum_probs=23.7
Q ss_pred EEEEEecccccceEEEEecCCeEEEEee
Q 039172 74 IILGIETSCDDTAAAVVRGNGEILSQVV 101 (477)
Q Consensus 74 ~iLgIeTS~ddtsvAlv~~dg~il~~~~ 101 (477)
+++|||..+..+.++|++++++++....
T Consensus 3 y~lGIDIGSTsTKaVVmd~~g~Il~~~i 30 (432)
T TIGR02259 3 CFVGIDLGSTTTKAVLMDDKGEVIGRGI 30 (432)
T ss_pred eEEEEEcCchhEEEEEEcCCCcEEEEEe
Confidence 6899999999999999997667876654
No 235
>PLN03173 chalcone synthase; Provisional
Probab=26.25 E-value=1.3e+02 Score=31.97 Aligned_cols=23 Identities=4% Similarity=0.140 Sum_probs=19.9
Q ss_pred HHHHHHHHHCCCCCCCcCEEEEe
Q 039172 129 PVVQEALHKANLTERDLSAVAVT 151 (477)
Q Consensus 129 ~~i~~~L~~agi~~~did~IAvt 151 (477)
.+.+++|+++|++++|||.|.+.
T Consensus 108 ~Aa~~AL~~ag~~~~dId~li~~ 130 (391)
T PLN03173 108 EAAAKAIKEWGQPKSKITHLVFC 130 (391)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEE
Confidence 68899999999999999987544
No 236
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=26.13 E-value=63 Score=26.25 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=13.5
Q ss_pred HHHCCCCCCCcCEEEEec
Q 039172 135 LHKANLTERDLSAVAVTI 152 (477)
Q Consensus 135 L~~agi~~~did~IAvt~ 152 (477)
|+++|++++|||.+.+..
T Consensus 1 L~~~g~~~~did~~i~hq 18 (90)
T PF08541_consen 1 LERAGLSPDDIDHFIPHQ 18 (90)
T ss_dssp HHHTT--GGGESEEEE-S
T ss_pred CccccCCHHHCCEEEeCC
Confidence 688999999999999876
No 237
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=26.03 E-value=82 Score=31.54 Aligned_cols=28 Identities=29% Similarity=0.292 Sum_probs=23.8
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEec
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVTI 152 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt~ 152 (477)
+.+..+++++|+++|++++|||.+++..
T Consensus 223 ~~~~~~i~~~l~~~g~~~~di~~~~~h~ 250 (320)
T cd00830 223 RLMPESIEEALEKAGLTPDDIDWFVPHQ 250 (320)
T ss_pred HhhHHHHHHHHHHcCCCHHHCCEEEECC
Confidence 3456789999999999999999988764
No 238
>PRK06064 acetyl-CoA acetyltransferase; Provisional
Probab=25.97 E-value=96 Score=32.58 Aligned_cols=55 Identities=25% Similarity=0.211 Sum_probs=34.1
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEec-CCCcchhhHHHHHHHHHHHhhcC---CCEEEec
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVTI-GPGLSLCLRVGVQKARKIAGQFN---LPIVGVH 182 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt~-GPG~~t~LrvG~~~Ak~La~~~~---~Pli~V~ 182 (477)
+....+++++|+++|++++|||.|.+.. .|+.+.+. ...+..++..++ +|.+.|+
T Consensus 24 eLa~~a~~~Al~dagl~~~~Id~vi~g~~~~~~~~~~---~~~a~~va~~lGl~~~~~~~v~ 82 (389)
T PRK06064 24 DLAVEAGLEALEDAGIDGKDIDAMYVGNMSAGLFVSQ---EHIAALIADYAGLAPIPATRVE 82 (389)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEeccccccccc---ccHHHHHHHHcCCCCCCeeEEe
Confidence 4456788899999999999999998744 34433211 012333444444 5666664
No 239
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=25.10 E-value=1.8e+02 Score=25.04 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=33.8
Q ss_pred ceEEEEecCCeEEEEeeehhhhh----hh-hcCC-ccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEE
Q 039172 85 TAAAVVRGNGEILSQVVSSQADL----LA-KYGG-VAPKMAEEAHSLAIDPVVQEALHKANLTERDLSAV 148 (477)
Q Consensus 85 tsvAlv~~dg~il~~~~~sq~~~----h~-~~gG-v~P~~a~~~H~~~l~~~i~~~L~~agi~~~did~I 148 (477)
++|.+++.+|+|+.......... +. ..|| +-|.+. ....+++++.++.|+...++..+
T Consensus 3 ~~v~i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~------~~~aa~REl~EEtGl~~~~l~~~ 66 (126)
T cd04697 3 TYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGES------YLQNAQRELEEELGIDGVQLTPL 66 (126)
T ss_pred EEEEEEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCC------HHHHHHHHHHHHHCCCccccEEe
Confidence 56788888899887554322111 11 1355 433322 22357889999999976654433
No 240
>PRK10949 protease 4; Provisional
Probab=25.08 E-value=2e+02 Score=32.71 Aligned_cols=64 Identities=19% Similarity=0.306 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcEEEE-----EchhHhhHHHHHHHHHHHHcCCCEEEcCCCCCCCcHHHHHHHHH
Q 039172 341 LHLEERCERAIEWALKIEPSIKHLVV-----SGGVASNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGVMVAWTG 410 (477)
Q Consensus 341 ~~L~~~~~ral~~~~~~~~~~~~lvl-----sGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~~~ctDNGamIa~ag 410 (477)
+.+.+.+++|.+ +..++.||+ +|.+++-..+++.+.+. ++.|.++++.=...|.-+|-+|+.++
T Consensus 350 ~~~~~~l~~a~~-----D~~vkaVvLrInSpGGs~~ase~i~~~i~~~-r~~gKPVvas~~~~aASggY~iA~aa 418 (618)
T PRK10949 350 DTTAAQIRDARL-----DPKVKAIVLRVNSPGGSVTASEVIRAELAAA-RAAGKPVVVSMGGMAASGGYWISTPA 418 (618)
T ss_pred HHHHHHHHHHHh-----CCCCcEEEEEecCCCCcHHHHHHHHHHHHHH-HhcCCcEEEEECCCCccHHHHHHHhc
Confidence 345566666665 677888888 56688889999988764 55677887753345666666666655
No 241
>PRK06147 3-oxoacyl-(acyl carrier protein) synthase; Validated
Probab=24.96 E-value=1.4e+02 Score=31.03 Aligned_cols=66 Identities=11% Similarity=-0.019 Sum_probs=40.1
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEecCCCcchh-hHHHHHHHHHHHhh-cCCCEEEeccHHHHHHHH
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVTIGPGLSLC-LRVGVQKARKIAGQ-FNLPIVGVHHMEAHALVA 191 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt~GPG~~t~-LrvG~~~Ak~La~~-~~~Pli~V~H~~AHa~sa 191 (477)
+.+...|+++|+++|++++|||.|... +.|.... .--+..+.+.+... ...|+..+-.+.+|..++
T Consensus 234 ~gl~~ai~~AL~~agl~~~dId~v~ah-~~gt~~~d~~e~~A~~~~f~~~~~~~~~~~~k~~~Gh~~aA 301 (348)
T PRK06147 234 DGLTQAIRAALAEAGCGLEDMDYRIAD-LNGEQYRFKEAALAEMRLFRVRKEFFDLWHPAECIGEIGAA 301 (348)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEcC-CCCCccchHHHHHHHHHHhhhccCCCceecchHhhcchHHH
Confidence 467789999999999999999998644 5554222 11133333333321 234555555566776543
No 242
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=24.88 E-value=2.4e+02 Score=28.99 Aligned_cols=54 Identities=17% Similarity=0.199 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHhhc--CCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcC
Q 039172 338 VAVLHLEERCERAIEWALKI--EPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCP 394 (477)
Q Consensus 338 av~~~L~~~~~ral~~~~~~--~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~P 394 (477)
.+.+.|+..+.|.++++... ...+++|+++||.+.=..|.+.|.+.+ ++++..-
T Consensus 250 ~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l---~~~v~~~ 305 (340)
T PF11104_consen 250 PFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEEL---GIPVEVI 305 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHH---TSEEEE-
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHH---CCceEEc
Confidence 34455777777888765432 335799999999998888998888775 5666544
No 243
>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=24.77 E-value=1.2e+02 Score=30.40 Aligned_cols=45 Identities=24% Similarity=0.297 Sum_probs=31.4
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEecCCCcchhhHHHHHHHHHHHhhcCCCE
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVTIGPGLSLCLRVGVQKARKIAGQFNLPI 178 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt~GPG~~t~LrvG~~~Ak~La~~~~~Pl 178 (477)
..+..+++++|+++|++++|||.+.+- ++.. .+-+.++..+++|.
T Consensus 219 ~~~~~~i~~~l~~~g~~~~di~~~~~h--~~~~-------~~~~~~~~~lg~~~ 263 (319)
T PRK09352 219 RELAKVAREALEAAGLTPEDIDWLVPH--QANL-------RIIDATAKKLGLPM 263 (319)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEC--CCCH-------HHHHHHHHHhCCCH
Confidence 456679999999999999999999864 2221 23344556666664
No 244
>PLN03184 chloroplast Hsp70; Provisional
Probab=24.50 E-value=1.1e+03 Score=26.96 Aligned_cols=64 Identities=14% Similarity=0.063 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCCCCCCcHHHHHHHHHHH
Q 039172 343 LEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGVMVAWTGIE 412 (477)
Q Consensus 343 L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~~~ctDNGamIa~ag~~ 412 (477)
+.+.+.++++.+.-....++.|++.||-+.-..+++.+.+.+. .++. .....|-++++|+|-+-
T Consensus 348 ~~~~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg---~~~~---~~~npdeaVA~GAAi~a 411 (673)
T PLN03184 348 CKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTG---KDPN---VTVNPDEVVALGAAVQA 411 (673)
T ss_pred HHHHHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHhC---CCcc---cccCcchHHHHHHHHHH
Confidence 3344445554222112357899999999999999999998763 2222 22345888888877543
No 245
>PRK06059 lipid-transfer protein; Provisional
Probab=24.44 E-value=2.8e+02 Score=29.21 Aligned_cols=27 Identities=26% Similarity=0.090 Sum_probs=22.7
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEe
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVT 151 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt 151 (477)
+....+++++|+++|++++|||.|++.
T Consensus 25 ~La~~A~~~Al~dAgl~~~dId~vi~~ 51 (399)
T PRK06059 25 EYGVVAARAALADAGLDWRDVQLVVGA 51 (399)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence 444578899999999999999999864
No 246
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=24.40 E-value=1.6e+02 Score=26.16 Aligned_cols=55 Identities=24% Similarity=0.433 Sum_probs=34.0
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEecCCCc---chhhHHHHHHHHHHHhhcCCCEEEeccH
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVTIGPGL---SLCLRVGVQKARKIAGQFNLPIVGVHHM 184 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt~GPG~---~t~LrvG~~~Ak~La~~~~~Pli~V~H~ 184 (477)
+.-..++++.+++.+++++||-.|-+|.-|-+ |++ ..++.+.-...+|++..+.+
T Consensus 20 ~at~eLl~~i~~~N~l~~~dIvSi~FT~T~DL~a~fPA-----~a~R~~~g~~~Vpl~c~~E~ 77 (118)
T PF07736_consen 20 EATRELLEEILERNELSPEDIVSIIFTVTPDLDAAFPA-----AAARELPGWDDVPLMCAQEM 77 (118)
T ss_dssp HHHHHHHHHHHHHTT--GGGEEEEEEEE-TT--SS-TC-----HHHHHTTTGTTSEEEEEE--
T ss_pred HHHHHHHHHHHHHcCCCHHHEEEEEEEeCCCcCccChH-----HHHHccCCCCccceeccCcC
Confidence 34456888999999999999999999988875 333 34444422245788776654
No 247
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=24.38 E-value=2.3e+02 Score=31.12 Aligned_cols=43 Identities=12% Similarity=0.157 Sum_probs=34.5
Q ss_pred CCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCCCCCCcHHHHHHHH
Q 039172 360 SIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGVMVAWT 409 (477)
Q Consensus 360 ~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~~~ctDNGamIa~a 409 (477)
...++.++||.+.|..+.+.+.+.. |.++|.- =++|.+.+|.|
T Consensus 442 ~~~rilvtGGAS~N~~Ilq~iadVf---~apVy~~----~~~~sa~lG~A 484 (545)
T KOG2531|consen 442 PPTRILVTGGASRNEAILQIIADVF---GAPVYTI----EGPNSAALGGA 484 (545)
T ss_pred CCceEEEecCccccHHHHHHHHHHh---CCCeEee----cCCchhhHHHH
Confidence 4578999999999999999998875 5677765 37788888754
No 248
>PRK07661 acetyl-CoA acetyltransferase; Provisional
Probab=24.30 E-value=1.2e+02 Score=32.28 Aligned_cols=27 Identities=22% Similarity=0.166 Sum_probs=22.5
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEe
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVT 151 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt 151 (477)
+....+++++|+++|+.++|||.|.+.
T Consensus 29 eLa~~A~~~AL~~ag~~~~dID~vi~g 55 (391)
T PRK07661 29 DLGALVVKETLKRAGNYEGPIDDLIIG 55 (391)
T ss_pred HHHHHHHHHHHHhcCCChhHCCEEEEE
Confidence 444578899999998877999999886
No 249
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=24.19 E-value=1.4e+02 Score=30.14 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHCCCCCCCcCEEEEec-CCCc
Q 039172 126 AIDPVVQEALHKANLTERDLSAVAVTI-GPGL 156 (477)
Q Consensus 126 ~l~~~i~~~L~~agi~~~did~IAvt~-GPG~ 156 (477)
....+++++|+++|+.++|||.|.++. .|+.
T Consensus 56 la~~A~~~al~~ag~~~~~Id~li~~~~~~~~ 87 (325)
T PRK12879 56 LAIKAAERALARAGLDAEDIDLIIVATTTPDY 87 (325)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCC
Confidence 345789999999999999999987654 3443
No 250
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=23.99 E-value=1.2e+02 Score=28.00 Aligned_cols=40 Identities=23% Similarity=0.414 Sum_probs=29.2
Q ss_pred CCCcCEEEEecCCCcchhhHHHHHHHHHHHhhcCCCEEEec
Q 039172 142 ERDLSAVAVTIGPGLSLCLRVGVQKARKIAGQFNLPIVGVH 182 (477)
Q Consensus 142 ~~did~IAvt~GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~ 182 (477)
..+.|+|.++-|||+..-+..-..+.+. +...++|++||-
T Consensus 40 ~~~~d~iii~Gg~~~~~d~~~~~~~i~~-~~~~~~PilGIC 79 (192)
T PF00117_consen 40 LDDYDGIIISGGPGSPYDIEGLIELIRE-ARERKIPILGIC 79 (192)
T ss_dssp TTTSSEEEEECESSSTTSHHHHHHHHHH-HHHTTSEEEEET
T ss_pred hcCCCEEEECCcCCcccccccccccccc-ccccceEEEEEe
Confidence 3589999999999998764444444443 334799999985
No 251
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms. Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. This model identifies both archaeal (aRF1) and eukaryotic (eRF1) of the protein. Also known as translation termination factor 1.
Probab=23.83 E-value=3e+02 Score=29.48 Aligned_cols=20 Identities=35% Similarity=0.532 Sum_probs=16.0
Q ss_pred hhhhhccccccccccCCCCC
Q 039172 4 LQTLSSRISRLNLLQKPSLN 23 (477)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~ 23 (477)
+..+.|.++||.++.||.-|
T Consensus 60 ~~ai~~~~~rlk~~~~~p~n 79 (403)
T TIGR03676 60 QSAIESIMQRLKLYKKPPEN 79 (403)
T ss_pred HHHHHHHHHHHhccCCCCCC
Confidence 35688999999999987655
No 252
>PLN02367 lactoylglutathione lyase
Probab=23.77 E-value=38 Score=33.59 Aligned_cols=32 Identities=31% Similarity=0.251 Sum_probs=26.6
Q ss_pred CcchhhhhccccccccccCCCCCccCCCCCcc
Q 039172 1 MSSLQTLSSRISRLNLLQKPSLNYSPMSPGLF 32 (477)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (477)
|-+..|+++|+||+.|..||++.+|+.-|-++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (233)
T PLN02367 1 SYSIATAISRLSPLILIVKPYSSGSSFITCFC 32 (233)
T ss_pred CchhhhhhhhccceEEecCCcccCCcceeecc
Confidence 34677899999999999999999988755544
No 253
>PRK13320 pantothenate kinase; Reviewed
Probab=23.69 E-value=4.2e+02 Score=26.20 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=21.6
Q ss_pred CcEEEEEecccccceEEEEecCCeEEE
Q 039172 72 DLIILGIETSCDDTAAAVVRGNGEILS 98 (477)
Q Consensus 72 ~m~iLgIeTS~ddtsvAlv~~dg~il~ 98 (477)
+|++|.||-....+..++++ +++++.
T Consensus 1 ~~M~L~iDiGNT~ik~~~~~-~~~~~~ 26 (244)
T PRK13320 1 VSMNLVIDIGNTTTKLAVFE-GDELLE 26 (244)
T ss_pred CceEEEEEeCCCcEEEEEEE-CCEEEE
Confidence 35799999999999999999 556654
No 254
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=23.32 E-value=1.6e+02 Score=31.34 Aligned_cols=51 Identities=22% Similarity=0.285 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHH-HhhcCCCCcEEEEEchhHhhHH-HHHHHHHHHHcCCCE
Q 039172 340 VLHLEERCERAIEW-ALKIEPSIKHLVVSGGVASNKY-VRARLDRAVKNNSLQ 390 (477)
Q Consensus 340 ~~~L~~~~~ral~~-~~~~~~~~~~lvlsGGVA~N~~-Lr~~L~~~~~~~g~~ 390 (477)
.+.++.++.+.+-. +-.+..+++.||++||++-|+. +|+.+.+.+...|+.
T Consensus 299 ~d~~~y~i~k~Ig~~~a~l~G~vDaivfTGGige~~~~vr~~~~~~l~~~gv~ 351 (388)
T PF00871_consen 299 LDAFAYQIAKYIGAYAAVLEGGVDAIVFTGGIGENSALVRERICRKLWFLGVK 351 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSS-SEEEEEHHHHHHTHHHHHHHHCTGGGGTB-
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCEEEEccccccchHHHHHHHHhhcCcCCeE
Confidence 34444444444321 1122357999999999999965 666665555444443
No 255
>PLN02929 NADH kinase
Probab=22.86 E-value=2e+02 Score=29.67 Aligned_cols=52 Identities=21% Similarity=0.328 Sum_probs=36.1
Q ss_pred HHhHHHHHHHHHHHCCCCC------------CCcCEEEEecCCCcchhhHHHHHHHHHHHhhcCCCEEEecc
Q 039172 124 SLAIDPVVQEALHKANLTE------------RDLSAVAVTIGPGLSLCLRVGVQKARKIAGQFNLPIVGVHH 183 (477)
Q Consensus 124 ~~~l~~~i~~~L~~agi~~------------~did~IAvt~GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~H 183 (477)
.+.....+.+.|++.|+.. .+.|.|.+--|-|-+- .+|+.+ ..++|+++||.
T Consensus 32 h~~~~~~~~~~L~~~gi~~~~v~r~~~~~~~~~~Dlvi~lGGDGT~L------~aa~~~--~~~iPvlGIN~ 95 (301)
T PLN02929 32 HKDTVNFCKDILQQKSVDWECVLRNELSQPIRDVDLVVAVGGDGTLL------QASHFL--DDSIPVLGVNS 95 (301)
T ss_pred hHHHHHHHHHHHHHcCCEEEEeeccccccccCCCCEEEEECCcHHHH------HHHHHc--CCCCcEEEEEC
Confidence 3445567788888888653 3568888888887432 344444 56799999987
No 256
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III. Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment.
Probab=22.76 E-value=1.2e+02 Score=30.61 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=31.3
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEecCCCcchhhHHHHHHHHHHHhhcCCC
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVTIGPGLSLCLRVGVQKARKIAGQFNLP 177 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt~GPG~~t~LrvG~~~Ak~La~~~~~P 177 (477)
+.+..+++++|+++|++++|||.+++.. ++ ..+.+.++..+++|
T Consensus 219 ~~~~~~~~~~l~~~g~~~~di~~~~~h~-~~--------~~~~~~~~~~lgi~ 262 (318)
T TIGR00747 219 RKMGDVVEETLEANGLDPEDIDWFVPHQ-AN--------LRIIEALAKRLELD 262 (318)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEECC-CC--------HHHHHHHHHHcCCC
Confidence 3456788999999999999999998642 22 13344556666776
No 257
>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein]
Probab=22.49 E-value=76 Score=33.03 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=24.0
Q ss_pred HHHHHHHHHHCCCCCCCcCEEEEe-cCCCc
Q 039172 128 DPVVQEALHKANLTERDLSAVAVT-IGPGL 156 (477)
Q Consensus 128 ~~~i~~~L~~agi~~~did~IAvt-~GPG~ 156 (477)
..+.+++|+.+|++++|||.|.|. .-|-.
T Consensus 57 ~~Aa~~AL~~Agi~~~dIDlII~aT~tpd~ 86 (323)
T COG0332 57 VEAARKALEDAGISPDDIDLIIVATSTPDH 86 (323)
T ss_pred HHHHHHHHHHcCCCHHHCCEEEEEcCCccc
Confidence 478899999999999999999875 44543
No 258
>KOG3147 consensus 6-phosphogluconolactonase - like protein [Carbohydrate transport and metabolism]
Probab=22.41 E-value=1.6e+02 Score=29.65 Aligned_cols=54 Identities=15% Similarity=0.217 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCcEEEEEchhHhhHHHHHHHHHH----HHcCCCEEEcCCCCC
Q 039172 339 AVLHLEERCERAIEWALKIEPSIKHLVVSGGVASNKYVRARLDRA----VKNNSLQLVCPPPSL 398 (477)
Q Consensus 339 v~~~L~~~~~ral~~~~~~~~~~~~lvlsGGVA~N~~Lr~~L~~~----~~~~g~~l~~Pp~~~ 398 (477)
+.+-+.++...+++ +.|.=+|++||| ..++.|.+.|..- .+-...++|+-.-+.
T Consensus 24 l~~~~~~~s~~~~~-----~~g~F~i~lSGG-SLi~~L~~~l~~~~~~~i~w~kW~if~~DER~ 81 (252)
T KOG3147|consen 24 LAGYIAEKSEKALK-----KRGRFTLALSGG-SLIQVLSKLLESPYQDDIDWSKWHIFFVDERV 81 (252)
T ss_pred HHHHHHHHHHHHHh-----cCCeEEEEEcCC-cHHHHHHHHhcccccCCCCccceEEEEEeccc
Confidence 34445555555555 456668999999 5667777766551 122234666655433
No 259
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=22.31 E-value=2.4e+02 Score=23.46 Aligned_cols=58 Identities=14% Similarity=0.177 Sum_probs=31.8
Q ss_pred eEEEEecCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCC--cCEEE
Q 039172 86 AAAVVRGNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERD--LSAVA 149 (477)
Q Consensus 86 svAlv~~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~d--id~IA 149 (477)
++++++.+|+++.........+.-+-|.+-|.+. ....+++++.++.|+.... +..+.
T Consensus 4 ~~~v~~~~~~vLl~~r~~~~~w~~PgG~ve~~Es------~~~aa~REl~EEtGl~~~~~~~~~~~ 63 (118)
T cd04690 4 AALILVRDGRVLLVRKRGTDVFYLPGGKIEAGET------PLQALIRELSEELGLDLDPDSLEYLG 63 (118)
T ss_pred EEEEEecCCeEEEEEECCCCcEECCCCccCCCCC------HHHHHHHHHHHHHCCccChhheEEEE
Confidence 4556666778776443322112222244555432 2234678899999997655 54444
No 260
>PRK09268 acetyl-CoA acetyltransferase; Provisional
Probab=22.26 E-value=1.2e+02 Score=32.58 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=24.0
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEec
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVTI 152 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt~ 152 (477)
+....+++.+|+++|+.++|||.|.+..
T Consensus 33 eL~~~a~~~al~~agl~~~~Id~vv~G~ 60 (427)
T PRK09268 33 DMLTAALDGLVDRFGLQGERLGEVVAGA 60 (427)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence 4456789999999999999999999865
No 261
>PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=22.08 E-value=1.1e+02 Score=31.74 Aligned_cols=45 Identities=13% Similarity=0.050 Sum_probs=32.5
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEecCCCcchhhHHHHHHHHHHHhhcCCCE
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVTIGPGLSLCLRVGVQKARKIAGQFNLPI 178 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt~GPG~~t~LrvG~~~Ak~La~~~~~Pl 178 (477)
+.++..++++|+++|++.+|||.+++..+ . ..+-+.+...+++|-
T Consensus 242 ~~~~~~i~~~L~~~gl~~~did~~v~HQ~--~-------~~i~~~i~~~Lgl~~ 286 (353)
T PRK12880 242 ECEPKSFKEILEFSKVDEKDIAFHLFHQS--N-------AYLVDCIKEELKLND 286 (353)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEECCC--C-------HHHHHHHHHHhCCCH
Confidence 34567999999999999999999987653 1 133345556666664
No 262
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=21.92 E-value=2.7e+02 Score=31.85 Aligned_cols=71 Identities=17% Similarity=0.122 Sum_probs=0.0
Q ss_pred hhcHHHHHHhHHHHHHHHHHHCCCCCCCcCEEEEecCCCcchhhHHHHHHHHHHHhhcCC-CEEEeccHHHHHHHHHH
Q 039172 117 KMAEEAHSLAIDPVVQEALHKANLTERDLSAVAVTIGPGLSLCLRVGVQKARKIAGQFNL-PIVGVHHMEAHALVARQ 193 (477)
Q Consensus 117 ~~a~~~H~~~l~~~i~~~L~~agi~~~did~IAvt~GPG~~t~LrvG~~~Ak~La~~~~~-Pli~V~H~~AHa~sa~~ 193 (477)
+.....-.+.+...++++|+++|++++|||.|...-|--.++.++ +.+...++. |+..++--++-|..+.+
T Consensus 326 e~l~~~l~~r~~~~v~~~L~~a~~~~~dId~VvLVGGssriP~V~------~~l~~~fg~~~~~~~nPdeaVA~GAAi 397 (657)
T PTZ00186 326 EGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVV------EEVKKFFQKDPFRGVNPDEAVALGAAT 397 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcccChHHH------HHHHHHhCCCccccCCCchHHHHhHHH
No 263
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.90 E-value=1.6e+02 Score=29.70 Aligned_cols=54 Identities=20% Similarity=0.237 Sum_probs=36.1
Q ss_pred HHhHHHHHHHHHHHCCCCC--CCcCEEEEecCCCcchhhHHHHHHHHHHHhh-cCCCEEEecc
Q 039172 124 SLAIDPVVQEALHKANLTE--RDLSAVAVTIGPGLSLCLRVGVQKARKIAGQ-FNLPIVGVHH 183 (477)
Q Consensus 124 ~~~l~~~i~~~L~~agi~~--~did~IAvt~GPG~~t~LrvG~~~Ak~La~~-~~~Pli~V~H 183 (477)
...+...+.+.|++.|+.. ++.|.|.+--|-|-+- .+++.+... .++|+++||.
T Consensus 13 ~~~~~~~l~~~l~~~g~~~~~~~~Dlvi~iGGDGT~L------~a~~~~~~~~~~iPilGIN~ 69 (265)
T PRK04885 13 SKRVASKLKKYLKDFGFILDEKNPDIVISVGGDGTLL------SAFHRYENQLDKVRFVGVHT 69 (265)
T ss_pred HHHHHHHHHHHHHHcCCccCCcCCCEEEEECCcHHHH------HHHHHhcccCCCCeEEEEeC
Confidence 3445556666677777764 4689998888888432 345554432 6899999985
No 264
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=21.89 E-value=3.4e+02 Score=26.67 Aligned_cols=50 Identities=18% Similarity=0.364 Sum_probs=38.6
Q ss_pred CCCcEEEEEchhHhhHHHHHHHHHHHHcCCCEEEcCCCCCCCcHHHHHHHHHHHHHHcCC
Q 039172 359 PSIKHLVVSGGVASNKYVRARLDRAVKNNSLQLVCPPPSLCTDNGVMVAWTGIEHFCVGR 418 (477)
Q Consensus 359 ~~~~~lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp~~~ctDNGamIa~ag~~~~~~g~ 418 (477)
.|..-+|++=|...+....++|.+.+++.|.++++|+ |+ ..|...++.|.
T Consensus 60 aGkhVl~~s~gAlad~e~~~~l~~aA~~~g~~l~i~s-------Ga---i~g~d~l~a~~ 109 (229)
T TIGR03855 60 NGKDLLIMSVGALADRELRERLREVARSSGRKVYIPS-------GA---IGGLDALKAAS 109 (229)
T ss_pred CCCCEEEECCcccCCHHHHHHHHHHHHhcCCEEEECh-------HH---HHHHHHHHhcc
Confidence 4677788887877788999999999999999999995 22 24455666654
No 265
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=21.81 E-value=88 Score=32.55 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=24.1
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEec
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVTI 152 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt~ 152 (477)
+.++.+|+++|+++|++++|||.|.+-.
T Consensus 271 ~~~~~~i~~~L~~~gl~~~dId~~~~Hq 298 (372)
T PRK07515 271 PMVAEHIVEHLAENGLTPADVKRFWLHQ 298 (372)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEECC
Confidence 3467899999999999999999998653
No 266
>PRK08242 acetyl-CoA acetyltransferase; Validated
Probab=21.77 E-value=1.4e+02 Score=32.00 Aligned_cols=27 Identities=7% Similarity=0.091 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHCCCCCCCcCEEEEecC
Q 039172 127 IDPVVQEALHKANLTERDLSAVAVTIG 153 (477)
Q Consensus 127 l~~~i~~~L~~agi~~~did~IAvt~G 153 (477)
...+++++|+++|++++|||.|.+..-
T Consensus 32 a~~A~~~al~~agi~p~~ID~vi~G~~ 58 (402)
T PRK08242 32 AAGLLEALRDRNGLDTAAVDDVVLGCV 58 (402)
T ss_pred HHHHHHHHHHHcCCCHHHcCEEEEEec
Confidence 346889999999999999999988543
No 267
>PRK13410 molecular chaperone DnaK; Provisional
Probab=21.70 E-value=2.4e+02 Score=32.21 Aligned_cols=62 Identities=21% Similarity=0.171 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHCCCCCCCcCEEEEecCCCcchhhHHHHHHHHHHHhhcCC-CEEEeccHHHHHHHHHH
Q 039172 126 AIDPVVQEALHKANLTERDLSAVAVTIGPGLSLCLRVGVQKARKIAGQFNL-PIVGVHHMEAHALVARQ 193 (477)
Q Consensus 126 ~l~~~i~~~L~~agi~~~did~IAvt~GPG~~t~LrvG~~~Ak~La~~~~~-Pli~V~H~~AHa~sa~~ 193 (477)
.+...|+++|+++|++++|||.|...-|-...+.++ +.+...++. |...++.-++-|..+.+
T Consensus 310 r~~~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~------~~l~~~fg~~~~~~~npdeaVA~GAAi 372 (668)
T PRK13410 310 RLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQ------QLVRTLIPREPNQNVNPDEVVAVGAAI 372 (668)
T ss_pred HHHHHHHHHHHHcCCChhhCcEEEEECCccccHHHH------HHHHHHcCCCcccCCCCchHHHHhHHH
Confidence 345677889999999999999999998877666554 334444554 45556766666665443
No 268
>PRK04262 hypothetical protein; Provisional
Probab=21.70 E-value=1.1e+02 Score=31.52 Aligned_cols=27 Identities=15% Similarity=0.118 Sum_probs=24.2
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEe
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVT 151 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt 151 (477)
+.++..++++|+++|++++|||.+++.
T Consensus 209 ~~~~~~i~~~L~~~gl~~~dId~~v~H 235 (347)
T PRK04262 209 KHIISAAKGLMEKLGLKPSDYDYAVFH 235 (347)
T ss_pred HHHHHHHHHHHHHhCcCHHHhceeecC
Confidence 567789999999999999999999876
No 269
>PLN02326 3-oxoacyl-[acyl-carrier-protein] synthase III
Probab=21.69 E-value=1.4e+02 Score=31.18 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=22.7
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEe
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVT 151 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt 151 (477)
+....+++++|+++|++++|||.|.+.
T Consensus 98 ~La~~Aa~~aL~~agi~~~dId~li~~ 124 (379)
T PLN02326 98 SLAVEAAKKALEMAGVDPEDVDLVLLC 124 (379)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence 334578999999999999999988765
No 270
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=21.60 E-value=4.3e+02 Score=30.01 Aligned_cols=30 Identities=30% Similarity=0.431 Sum_probs=24.0
Q ss_pred CCCcEEEEEecccccceEEEEecCCeEEEEe
Q 039172 70 KDDLIILGIETSCDDTAAAVVRGNGEILSQV 100 (477)
Q Consensus 70 ~~~m~iLgIeTS~ddtsvAlv~~dg~il~~~ 100 (477)
++...|.|||-. -+|++|+++-||+++.-.
T Consensus 241 ~r~~lIVGIDPG-iTtgiAvldldGevl~~~ 270 (652)
T COG2433 241 ERRSLIVGIDPG-ITTGIAVLDLDGEVLDLE 270 (652)
T ss_pred cccceEEEeCCC-ceeeEEEEecCCcEEeee
Confidence 344789999985 578999999999998643
No 271
>TIGR02430 pcaF beta-ketoadipyl CoA thiolase. Members of this family are designated beta-ketoadipyl CoA thiolase, an enzyme that acts at the end of pathways for the degradation of protocatechuate (from benzoate and related compounds) and of phenylacetic acid.
Probab=21.56 E-value=1.2e+02 Score=32.36 Aligned_cols=59 Identities=14% Similarity=0.030 Sum_probs=35.5
Q ss_pred HhHHHHHHHHHHH-CCCCCCCcCEEEEecC--CCcchhhHHHHHHHHHHHhhcCCCEEEeccH
Q 039172 125 LAIDPVVQEALHK-ANLTERDLSAVAVTIG--PGLSLCLRVGVQKARKIAGQFNLPIVGVHHM 184 (477)
Q Consensus 125 ~~l~~~i~~~L~~-agi~~~did~IAvt~G--PG~~t~LrvG~~~Ak~La~~~~~Pli~V~H~ 184 (477)
+....+++++|++ ++++++|||.|.+... .|. .+.-.+-.++..+....++|.+.|+..
T Consensus 27 ~L~~~a~~~al~~~a~i~~~~Id~v~~G~~~~~~~-~~~~~ar~~~~~~Gl~~~~p~~~V~~~ 88 (400)
T TIGR02430 27 DLAAVPIKALLARNPQLDWAAIDDVIYGCANQAGE-DNRNVARMAALLAGLPVSVPGTTVNRL 88 (400)
T ss_pred HHHHHHHHHHHHhccCCCHHHCCEEEEEecccccc-ccccHHHHHHHHcCCCCCCceEEeech
Confidence 3445788999995 6999999999998743 221 111122223333333335788888654
No 272
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=21.43 E-value=1.5e+02 Score=31.68 Aligned_cols=44 Identities=23% Similarity=0.614 Sum_probs=30.6
Q ss_pred CcCEEEEecCCCcchhhHHHHHHHHHHHhhcCCCEEEeccHHHHHHH
Q 039172 144 DLSAVAVTIGPGLSLCLRVGVQKARKIAGQFNLPIVGVHHMEAHALV 190 (477)
Q Consensus 144 did~IAvt~GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~H~~AHa~s 190 (477)
++|+|.++.|||....+.--+...+.+. ..++|+++|- .+|-+.
T Consensus 233 ~~dgIilSgGPg~p~~~~~~i~~i~~~~-~~~~PilGIC--lGhQlL 276 (382)
T CHL00197 233 QPDGILLSNGPGDPSAIHYGIKTVKKLL-KYNIPIFGIC--MGHQIL 276 (382)
T ss_pred CCCEEEEcCCCCChhHHHHHHHHHHHHH-hCCCCEEEEc--HHHHHH
Confidence 6899999999998776554444555543 3479999975 355433
No 273
>PRK06504 acetyl-CoA acetyltransferase; Provisional
Probab=21.34 E-value=1.1e+02 Score=32.44 Aligned_cols=57 Identities=12% Similarity=0.091 Sum_probs=35.4
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEecCC--Ccc--hhhHHHHHHHHHHHhhcCCCEEEeccH
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVTIGP--GLS--LCLRVGVQKARKIAGQFNLPIVGVHHM 184 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt~GP--G~~--t~LrvG~~~Ak~La~~~~~Pli~V~H~ 184 (477)
+....+++++|+++|++++|||.|.+..-. |.. ...| +..++.+| ..++|.+.|+..
T Consensus 28 ~L~~~a~~~al~~a~l~~~~Id~vi~G~~~~~~~~~~~~ar-~~~l~~gl--~~~vP~~tV~~~ 88 (390)
T PRK06504 28 DLAAQVLDALVDRSGADPALIEDVIMGCVSQVGEQATNVAR-NAVLASKL--PESVPGTSIDRQ 88 (390)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEeccccccccccHHH-HHHHHcCC--CCCCceEEEech
Confidence 344578999999999999999999986432 221 1111 11122222 136899888653
No 274
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=21.32 E-value=1.3e+02 Score=28.35 Aligned_cols=38 Identities=21% Similarity=0.268 Sum_probs=24.6
Q ss_pred CcCEEEEecCCCcchhhHHHHHHHHHHHhhcCCCEEEecc
Q 039172 144 DLSAVAVTIGPGLSLCLRVGVQKARKIAGQFNLPIVGVHH 183 (477)
Q Consensus 144 did~IAvt~GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~H 183 (477)
++|+|.++-|||...-...-....+.+ ..++|+++|-.
T Consensus 43 ~~d~iilsgGpg~p~~~~~~~~~i~~~--~~~~PvLGIC~ 80 (188)
T TIGR00566 43 LPLLIVISPGPCTPNEAGISLEAIRHF--AGKLPILGVCL 80 (188)
T ss_pred CCCEEEEcCCCCChhhcchhHHHHHHh--ccCCCEEEECH
Confidence 589999999999864321112233332 34899999864
No 275
>PRK06289 acetyl-CoA acetyltransferase; Provisional
Probab=21.21 E-value=1.2e+02 Score=32.02 Aligned_cols=28 Identities=25% Similarity=0.215 Sum_probs=23.7
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEec
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVTI 152 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt~ 152 (477)
+....+++++|+++|++++|||.|.+..
T Consensus 28 eLa~eA~~~AL~dAgl~~~dID~vi~g~ 55 (403)
T PRK06289 28 DLTREVVDGTLAAAGVDADDIEVVHVGN 55 (403)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence 4446789999999999999999998764
No 276
>PRK14691 3-oxoacyl-(acyl carrier protein) synthase II; Provisional
Probab=21.15 E-value=99 Score=32.22 Aligned_cols=62 Identities=11% Similarity=0.086 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHCCCCCCCcCEEEEecCCCcchhhHHHHH-HHHHHHhhcCCCEEEeccHHHHH
Q 039172 126 AIDPVVQEALHKANLTERDLSAVAVTIGPGLSLCLRVGVQ-KARKIAGQFNLPIVGVHHMEAHA 188 (477)
Q Consensus 126 ~l~~~i~~~L~~agi~~~did~IAvt~GPG~~t~LrvG~~-~Ak~La~~~~~Pli~V~H~~AHa 188 (477)
....+++++|+++|++++|||.|- ..|+|...+=.+=.. +.+.+.....+|+-.+-.+.+|.
T Consensus 207 ~~~~ai~~AL~~Agl~p~dIdyIe-aHgtgT~~~D~~E~~Ai~~~fg~~~~~~v~s~K~~~GH~ 269 (342)
T PRK14691 207 GAYRAMKIALRQAGITPEQVQHLN-AHATSTPVGDLGEINAIKHLFGESNALAITSTKSATGHL 269 (342)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEE-ecCCCCcCCCHHHHHHHHHHhCCCCCceEECCcccccCC
Confidence 345689999999999999999875 446665433122111 11112111235555555566664
No 277
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=21.09 E-value=2.9e+02 Score=28.67 Aligned_cols=65 Identities=14% Similarity=0.210 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcCCCCcE-EEEEchhHhhHHHHHHHHHHHHcCCCEEEcCC
Q 039172 328 RANIAASFQRVAVLHLEERCE-RAIEWALKIEPSIKH-LVVSGGVASNKYVRARLDRAVKNNSLQLVCPP 395 (477)
Q Consensus 328 ~~dIAasfQ~av~~~L~~~~~-ral~~~~~~~~~~~~-lvlsGGVA~N~~Lr~~L~~~~~~~g~~l~~Pp 395 (477)
..++...++.. .+.+.+.+. +.++.... ...++. ++++||-+.=..+++.+.+.+.. ..++.-|.
T Consensus 282 ~~~l~~ii~~~-~~ei~~~i~~~~L~~~~~-~~~i~~gIvLtGG~S~ipgi~~~l~~~~~~-~vr~~~P~ 348 (371)
T TIGR01174 282 RKELAEIIEAR-AEEILEIVKQKELRKSGF-KEELNGGIVLTGGGAQLEGIVELAEKVFDN-PVRIGLPQ 348 (371)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHhcCC-cccCCCEEEEeChHHcccCHHHHHHHHhCC-CeEEECCC
Confidence 34444433332 333444443 44542211 123444 99999999999999999988753 34555543
No 278
>PLN02836 3-oxoacyl-[acyl-carrier-protein] synthase
Probab=21.07 E-value=1.4e+02 Score=32.00 Aligned_cols=31 Identities=13% Similarity=0.145 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHCCCCCCCcCEEEEecCCCcc
Q 039172 126 AIDPVVQEALHKANLTERDLSAVAVTIGPGLS 157 (477)
Q Consensus 126 ~l~~~i~~~L~~agi~~~did~IAvt~GPG~~ 157 (477)
.+..+++++|+++|++++|||.|- ..|.|..
T Consensus 300 ~~~~a~~~Al~~Agi~~~dId~ve-~hgtgt~ 330 (437)
T PLN02836 300 GAVLAMTRALQQSGLHPNQVDYVN-AHATSTP 330 (437)
T ss_pred HHHHHHHHHHHHcCCCHhHcCEEE-ccCCcCc
Confidence 345678999999999999999885 4466653
No 279
>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=20.86 E-value=1.7e+02 Score=29.28 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=23.6
Q ss_pred HHhHHHHHHHHHHHCCCCCCCcCEEEEec
Q 039172 124 SLAIDPVVQEALHKANLTERDLSAVAVTI 152 (477)
Q Consensus 124 ~~~l~~~i~~~L~~agi~~~did~IAvt~ 152 (477)
.+....+++++|+++|+.++|||.|.+..
T Consensus 53 ~~la~~A~~~al~~agl~~~~id~vi~~~ 81 (319)
T PRK09352 53 SDLATEAAKKALEAAGIDPEDIDLIIVAT 81 (319)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEEc
Confidence 34455789999999999999999987653
No 280
>PRK12578 acetyl-CoA acetyltransferase; Provisional
Probab=20.85 E-value=1.4e+02 Score=31.27 Aligned_cols=28 Identities=25% Similarity=0.274 Sum_probs=23.5
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEec
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVTI 152 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt~ 152 (477)
+....+++++|+++|++++|||.|.+..
T Consensus 23 eLa~~A~~~AL~dAgi~~~dID~vi~g~ 50 (385)
T PRK12578 23 ELAWESIKEALNDAGVSQTDIELVVVGS 50 (385)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence 3445789999999999999999998764
No 281
>TIGR03150 fabF beta-ketoacyl-acyl-carrier-protein synthase II. FabB sequences should fall well below the noise cutoff of this model.
Probab=20.79 E-value=1.7e+02 Score=30.50 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHCCCCCCCcCEEEEecCCCc
Q 039172 127 IDPVVQEALHKANLTERDLSAVAVTIGPGL 156 (477)
Q Consensus 127 l~~~i~~~L~~agi~~~did~IAvt~GPG~ 156 (477)
+..+++++|+++|++++|||.|- ..|.|.
T Consensus 277 ~~~ai~~Al~~Agi~~~dId~ve-~h~tgt 305 (407)
T TIGR03150 277 AARAMRAALKDAGINPEDVDYIN-AHGTST 305 (407)
T ss_pred HHHHHHHHHHHcCCCHhHCCEEe-CcCCCC
Confidence 45689999999999999999884 446665
No 282
>PRK07910 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=20.65 E-value=1.3e+02 Score=32.07 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHCCCCCCCcCEEEEecCCCc
Q 039172 127 IDPVVQEALHKANLTERDLSAVAVTIGPGL 156 (477)
Q Consensus 127 l~~~i~~~L~~agi~~~did~IAvt~GPG~ 156 (477)
...+++++|+++|++++|||.|- ..|.|.
T Consensus 288 ~~~a~~~Al~~agi~~~did~ie-~hgtgt 316 (418)
T PRK07910 288 AGHAMTRAIELAGLTPGDIDHVN-AHATGT 316 (418)
T ss_pred HHHHHHHHHHHhCCCHHHCCEEE-cCCcCC
Confidence 45689999999999999999984 445654
No 283
>cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction. Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units).
Probab=20.58 E-value=1.4e+02 Score=29.94 Aligned_cols=66 Identities=20% Similarity=0.183 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEecCCCcchhhHHHHHHHHHHHhhcCCCEEEeccHHHHHHHH
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVTIGPGLSLCLRVGVQKARKIAGQFNLPIVGVHHMEAHALVA 191 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt~GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~H~~AHa~sa 191 (477)
+.+..+++++|+++|++++|||.|.+. ++|....-.+-.......-.....++..+-...+|..++
T Consensus 205 ~~~~~~i~~al~~agl~~~did~~~~h-~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~G~~~aa 270 (332)
T cd00825 205 EGLARAAKEALAVAGLTVWDIDYLVAH-GTGTPIGDVKELKLLRSEFGDKSPAVSATKAMTGNLSSA 270 (332)
T ss_pred HHHHHHHHHHHHHcCCCHhHCCEEEcc-CCCCCCCCHHHHHHHHHHhCCCCceeECCCcccccchhH
No 284
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III. Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment.
Probab=20.40 E-value=1.7e+02 Score=29.33 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=24.5
Q ss_pred HhHHHHHHHHHHHCCCCCCCcCEEEEec-CCC
Q 039172 125 LAIDPVVQEALHKANLTERDLSAVAVTI-GPG 155 (477)
Q Consensus 125 ~~l~~~i~~~L~~agi~~~did~IAvt~-GPG 155 (477)
+....+++++|+++|+.++|||.|.+.. .|.
T Consensus 53 ~la~~A~~~al~~agl~~~~Id~~i~~~~~~~ 84 (318)
T TIGR00747 53 TMGFEAAKRAIENAGISKDDIDLIIVATTTPD 84 (318)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEECCCCC
Confidence 3445789999999999999999997753 344
No 285
>TIGR00748 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase, putative. Thus, although there is no experimental evidence supporting this name, the bioinformatics-based conclusion appears to be sound.
Probab=20.36 E-value=1.7e+02 Score=30.17 Aligned_cols=29 Identities=14% Similarity=0.112 Sum_probs=24.5
Q ss_pred HHhHHHHHHHHHHHCCCCCCCcCEEEEec
Q 039172 124 SLAIDPVVQEALHKANLTERDLSAVAVTI 152 (477)
Q Consensus 124 ~~~l~~~i~~~L~~agi~~~did~IAvt~ 152 (477)
.+....+++++|+++|++++|||.+++..
T Consensus 207 ~~~~~~~~~~~L~~~gl~~~did~~i~Hq 235 (345)
T TIGR00748 207 FHHVVTAAKGLMEKLGLTPEDFDYAVFHQ 235 (345)
T ss_pred HHHHHHHHHHHHHHcCCCHHHcCEEEeCC
Confidence 44455789999999999999999998764
No 286
>PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=20.21 E-value=1.8e+02 Score=30.48 Aligned_cols=38 Identities=13% Similarity=0.036 Sum_probs=28.3
Q ss_pred HHHHHHHHHHCCCCCCCcCEEEEecCCCcchhhHHHHHHHHHH
Q 039172 128 DPVVQEALHKANLTERDLSAVAVTIGPGLSLCLRVGVQKARKI 170 (477)
Q Consensus 128 ~~~i~~~L~~agi~~~did~IAvt~GPG~~t~LrvG~~~Ak~L 170 (477)
+..++++|+++|++++|||.+..... +.++--.+++.|
T Consensus 275 ~~~i~~~L~~~gl~~~DId~~v~Hq~-----n~~~~~~v~~~l 312 (378)
T PRK06816 275 IKPLLELVDKRNLDPDDIDYFLPHYS-----SEYFREKIVELL 312 (378)
T ss_pred HHHHHHHHHHcCCChhhCCEEeeCcc-----cHHHHHHHHHHH
Confidence 67889999999999999999986653 334444555554
No 287
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=20.19 E-value=1.5e+02 Score=26.08 Aligned_cols=27 Identities=33% Similarity=0.500 Sum_probs=22.1
Q ss_pred EEEEecccccceEEEEecCCeEEEEee
Q 039172 75 ILGIETSCDDTAAAVVRGNGEILSQVV 101 (477)
Q Consensus 75 iLgIeTS~ddtsvAlv~~dg~il~~~~ 101 (477)
++|||.+.+...+|+++.+|+++....
T Consensus 1 ~vGiDv~k~~~~v~v~~~~~~~~~~~~ 27 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPNGEKLRRFK 27 (144)
T ss_pred eEEEEcccCeEEEEEEcCCCcEEEEEE
Confidence 589999999999999998875655443
No 288
>PRK13359 beta-ketoadipyl CoA thiolase; Provisional
Probab=20.17 E-value=1.4e+02 Score=31.73 Aligned_cols=59 Identities=5% Similarity=-0.097 Sum_probs=34.9
Q ss_pred HhHHHHHHHHHHH-CCCCCCCcCEEEEecC-CCcchhhHHHHHHHHHHHhhcCCCEEEecc
Q 039172 125 LAIDPVVQEALHK-ANLTERDLSAVAVTIG-PGLSLCLRVGVQKARKIAGQFNLPIVGVHH 183 (477)
Q Consensus 125 ~~l~~~i~~~L~~-agi~~~did~IAvt~G-PG~~t~LrvG~~~Ak~La~~~~~Pli~V~H 183 (477)
+....+++++|++ +|+.++|||.|.+..- ++...+--++-..+.......++|.+.|+.
T Consensus 28 ~L~~~a~~~al~r~a~i~~~~Id~vi~G~~~~~~~~g~~~ar~~~l~~Gl~~~vp~~tV~~ 88 (400)
T PRK13359 28 DLGAVPLKALVERNPDVDWAAIDDVIYGCANQAGEDNRNVARMSLLLAGLPHGVPGSTINR 88 (400)
T ss_pred HHHHHHHHHHHHhccCCCHHHCCEEEEEeccccccccccHHHHHHHHcCCCCCCceEEEec
Confidence 4445689999996 5999999999998642 222211122222332223333577777753
No 289
>COG1515 Nfi Deoxyinosine 3'endonuclease (endonuclease V) [DNA replication, recombination, and repair]
Probab=20.11 E-value=2.5e+02 Score=27.59 Aligned_cols=98 Identities=23% Similarity=0.361 Sum_probs=50.8
Q ss_pred cEEEEEeccccc----ceEE-EEe-cCCeEEEEeeehhhhhhhhcCCccchhcHHHHHHhHHHHHHHHHHHCCCCCCCcC
Q 039172 73 LIILGIETSCDD----TAAA-VVR-GNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSLAIDPVVQEALHKANLTERDLS 146 (477)
Q Consensus 73 m~iLgIeTS~dd----tsvA-lv~-~dg~il~~~~~sq~~~h~~~gGv~P~~a~~~H~~~l~~~i~~~L~~agi~~~did 146 (477)
-+|.|+|-|..+ .+++ +++ .+++++-.....- .+.-+| +|-+-+. ..++.++ ++++... .+.|
T Consensus 29 ~~vagvDvsy~~~~~~~aa~Vv~~~~~~~vie~~v~~~-~~~~PY---IPGfLaF---RE~p~~l-~a~~~l~---~~~d 97 (212)
T COG1515 29 RTVAGVDVSYEDGERGRAAAVVLDYPDLEVIETAVVRG-PVSFPY---IPGFLAF---RELPLLL-KALEKLS---VKPD 97 (212)
T ss_pred ceEEEEEEEecCCCeEEEEEEEEEcCCCceEEEEEEec-ccccCc---ccchhhh---hhhHHHH-HHHHhcC---CCCC
Confidence 378999998871 2233 333 2666665443221 222333 3433222 2233333 4444433 3688
Q ss_pred EEEEecCCCcchhhHHHHHHHHHHHhhcCCCEEEeccH
Q 039172 147 AVAVTIGPGLSLCLRVGVQKARKIAGQFNLPIVGVHHM 184 (477)
Q Consensus 147 ~IAvt~GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~H~ 184 (477)
.|-|+ |-|..---+.|++. -++..+++|.|||--.
T Consensus 98 ~ilVD-G~GiaHPR~~GlAs--H~Gv~l~~PtIGVAK~ 132 (212)
T COG1515 98 LLLVD-GHGIAHPRRLGLAS--HIGVLLDVPTIGVAKS 132 (212)
T ss_pred EEEEc-CcceecCcccChhh--eeeeeeCCCceeEehh
Confidence 88888 33443333444433 3556789999998643
No 290
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=20.02 E-value=1.9e+02 Score=30.65 Aligned_cols=64 Identities=20% Similarity=0.332 Sum_probs=42.3
Q ss_pred CcCEEEEecCCCcchhhHHHHHHHHHHHhhcCCCEEEec---cHHHHHHHHHHh---hhhcCCcCceeeee
Q 039172 144 DLSAVAVTIGPGLSLCLRVGVQKARKIAGQFNLPIVGVH---HMEAHALVARQW---LTMTRMQNDFLDLF 208 (477)
Q Consensus 144 did~IAvt~GPG~~t~LrvG~~~Ak~La~~~~~Pli~V~---H~~AHa~sa~~~---~~~~~~~~P~l~ll 208 (477)
+.|+|-.++|||=...+.-.+.+.|.|. ...+|+.++- -+.|.|+.+.-+ ....+...|+.++.
T Consensus 220 ~pDGiflSNGPGDP~~~~~~i~~ik~l~-~~~iPifGICLGHQllalA~Ga~T~KmkFGHrG~NhPV~dl~ 289 (368)
T COG0505 220 NPDGIFLSNGPGDPAPLDYAIETIKELL-GTKIPIFGICLGHQLLALALGAKTYKMKFGHRGANHPVKDLD 289 (368)
T ss_pred CCCEEEEeCCCCChhHHHHHHHHHHHHh-ccCCCeEEEcHHHHHHHHhcCCceeecccCCCCCCcCccccc
Confidence 5799999999999999888888888876 3456999984 233333221100 01124466877776
Done!