Query 039173
Match_columns 265
No_of_seqs 197 out of 980
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 07:02:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039173.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039173hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3202 SNARE protein TLG1/Syn 100.0 1.4E-28 3.1E-33 212.9 24.1 219 29-255 1-229 (235)
2 KOG3385 V-SNARE [Intracellular 99.5 1.1E-13 2.3E-18 106.0 7.7 83 174-257 32-114 (118)
3 PF05739 SNARE: SNARE domain; 99.4 5.9E-12 1.3E-16 88.0 9.4 62 175-236 1-62 (63)
4 cd00193 t_SNARE Soluble NSF (N 99.0 1.7E-09 3.6E-14 74.2 8.0 58 174-231 2-59 (60)
5 KOG0811 SNARE protein PEP12/VA 99.0 1.4E-07 2.9E-12 84.0 20.0 91 174-264 176-268 (269)
6 smart00397 t_SNARE Helical reg 98.9 9.2E-09 2E-13 71.7 8.8 58 174-231 8-65 (66)
7 COG5325 t-SNARE complex subuni 98.9 3.1E-08 6.7E-13 87.1 12.0 69 174-242 191-259 (283)
8 KOG0809 SNARE protein TLG2/Syn 98.9 4.2E-07 9.2E-12 80.6 18.9 152 97-258 129-298 (305)
9 KOG3065 SNAP-25 (synaptosome-a 98.8 7.6E-09 1.7E-13 92.1 7.5 60 174-233 214-273 (273)
10 KOG0812 SNARE protein SED5/Syn 98.8 1.1E-05 2.4E-10 71.5 26.9 84 177-260 226-309 (311)
11 KOG0810 SNARE protein Syntaxin 98.8 2.4E-08 5.1E-13 90.2 10.5 68 172-239 200-267 (297)
12 PF09177 Syntaxin-6_N: Syntaxi 98.8 4.6E-08 1E-12 74.4 9.2 88 34-121 1-97 (97)
13 PF09753 Use1: Membrane fusion 98.6 2E-06 4.3E-11 76.4 14.6 80 174-255 163-242 (251)
14 COG5074 t-SNARE complex subuni 98.5 7.9E-07 1.7E-11 76.4 9.0 85 175-260 182-269 (280)
15 KOG1666 V-SNARE [Intracellular 98.3 0.00029 6.2E-09 60.2 19.3 211 34-263 6-219 (220)
16 KOG2678 Predicted membrane pro 97.5 0.0019 4.2E-08 55.5 12.1 89 175-265 152-242 (244)
17 PF03908 Sec20: Sec20; InterP 97.4 0.0064 1.4E-07 45.6 11.8 82 178-260 8-89 (92)
18 PF00957 Synaptobrevin: Synapt 97.1 0.016 3.4E-07 43.0 11.2 59 177-235 2-60 (89)
19 KOG0810 SNARE protein Syntaxin 97.0 0.035 7.5E-07 50.5 14.6 80 174-257 209-288 (297)
20 KOG0860 Synaptobrevin/VAMP-lik 96.7 0.035 7.5E-07 43.2 10.7 35 202-236 53-87 (116)
21 KOG3251 Golgi SNAP receptor co 96.6 0.086 1.9E-06 45.4 13.7 155 70-238 35-189 (213)
22 KOG3208 SNARE protein GS28 [In 96.4 0.21 4.5E-06 43.1 14.5 59 178-236 149-207 (231)
23 KOG3894 SNARE protein Syntaxin 96.1 0.1 2.2E-06 47.4 11.5 71 173-243 227-297 (316)
24 PF12352 V-SNARE_C: Snare regi 95.4 0.3 6.5E-06 33.9 9.6 59 177-235 7-65 (66)
25 PF10779 XhlA: Haemolysin XhlA 94.8 0.54 1.2E-05 33.4 9.6 51 195-249 9-59 (71)
26 COG5325 t-SNARE complex subuni 94.3 0.98 2.1E-05 40.4 11.8 80 174-257 198-277 (283)
27 COG5074 t-SNARE complex subuni 92.9 1.8 3.8E-05 37.9 10.8 77 175-258 196-272 (280)
28 KOG0811 SNARE protein PEP12/VA 92.2 4 8.7E-05 36.7 12.6 81 174-256 183-264 (269)
29 PF11166 DUF2951: Protein of u 90.4 6.1 0.00013 29.6 10.5 77 168-259 15-92 (98)
30 PF10779 XhlA: Haemolysin XhlA 89.5 4.4 9.6E-05 28.6 8.4 20 215-234 36-55 (71)
31 PF01519 DUF16: Protein of unk 88.7 3.7 7.9E-05 31.3 7.8 50 175-224 50-99 (102)
32 KOG0812 SNARE protein SED5/Syn 88.6 10 0.00023 34.2 11.8 78 173-255 229-309 (311)
33 PF09753 Use1: Membrane fusion 86.9 8.9 0.00019 33.9 10.6 66 187-252 169-236 (251)
34 PF03908 Sec20: Sec20; InterP 86.0 12 0.00026 27.7 10.3 79 186-264 6-90 (92)
35 PF07889 DUF1664: Protein of u 85.0 9.6 0.00021 30.3 8.8 61 174-234 64-124 (126)
36 PRK00846 hypothetical protein; 83.1 15 0.00033 26.6 8.5 55 172-226 7-61 (77)
37 PF00957 Synaptobrevin: Synapt 81.8 18 0.00038 26.4 11.6 42 180-222 16-57 (89)
38 PF03904 DUF334: Domain of unk 81.5 36 0.00078 29.8 11.6 47 200-246 91-154 (230)
39 PF07798 DUF1640: Protein of u 80.4 33 0.00071 28.6 12.8 56 196-257 117-172 (177)
40 PF06143 Baculo_11_kDa: Baculo 79.0 3.4 7.3E-05 30.5 3.8 19 226-244 19-38 (84)
41 PF10661 EssA: WXG100 protein 78.5 2.3 5.1E-05 34.6 3.2 27 239-265 116-142 (145)
42 KOG3202 SNARE protein TLG1/Syn 76.6 53 0.0012 29.0 12.0 77 176-256 157-233 (235)
43 PF05478 Prominin: Prominin; 75.8 19 0.00041 37.4 9.7 21 187-207 359-379 (806)
44 TIGR01149 mtrG N5-methyltetrah 74.4 26 0.00056 24.8 7.0 24 200-223 13-36 (70)
45 PRK10884 SH3 domain-containing 72.7 62 0.0013 27.9 11.4 38 192-229 118-155 (206)
46 PF06024 DUF912: Nucleopolyhed 72.7 2.4 5.1E-05 32.3 1.7 20 244-263 66-85 (101)
47 KOG2678 Predicted membrane pro 72.2 56 0.0012 28.6 10.0 32 212-243 182-213 (244)
48 PF05531 NPV_P10: Nucleopolyhe 69.9 18 0.00039 26.1 5.6 50 174-223 14-66 (75)
49 PF00804 Syntaxin: Syntaxin; 69.1 41 0.0009 24.4 10.9 87 34-120 3-102 (103)
50 PHA02414 hypothetical protein 68.7 49 0.0011 25.1 9.6 79 182-264 33-111 (111)
51 KOG0860 Synaptobrevin/VAMP-lik 68.3 56 0.0012 25.6 9.1 49 175-224 37-85 (116)
52 PRK02793 phi X174 lysis protei 68.0 39 0.00085 24.0 7.1 49 176-224 6-54 (72)
53 PF04102 SlyX: SlyX; InterPro 67.6 37 0.0008 23.8 6.9 48 178-225 4-51 (69)
54 PF00558 Vpu: Vpu protein; In 67.5 7 0.00015 28.6 3.1 22 242-263 5-26 (81)
55 PF01519 DUF16: Protein of unk 67.4 54 0.0012 25.1 8.3 60 175-234 34-95 (102)
56 PF05283 MGC-24: Multi-glycosy 64.9 6.3 0.00014 33.4 2.9 26 239-264 160-185 (186)
57 PF09680 Tiny_TM_bacill: Prote 64.8 6.7 0.00015 21.8 2.0 16 240-255 4-19 (24)
58 KOG0859 Synaptobrevin/VAMP-lik 63.4 21 0.00046 30.6 5.7 18 176-193 120-140 (217)
59 PRK01026 tetrahydromethanopter 63.3 55 0.0012 23.7 8.5 24 200-223 16-39 (77)
60 PF03597 CcoS: Cytochrome oxid 63.0 13 0.00028 24.1 3.4 22 243-265 6-27 (45)
61 PF15106 TMEM156: TMEM156 prot 62.5 9.1 0.0002 33.0 3.4 19 245-263 180-198 (226)
62 PRK09973 putative outer membra 62.5 54 0.0012 24.2 7.0 32 179-210 39-70 (85)
63 PF04210 MtrG: Tetrahydrometha 61.2 56 0.0012 23.1 7.0 23 201-223 14-36 (70)
64 PF03670 UPF0184: Uncharacteri 60.4 30 0.00064 25.5 5.3 17 174-190 29-45 (83)
65 COG4064 MtrG Tetrahydromethano 60.4 58 0.0013 23.1 7.9 25 199-223 15-39 (75)
66 PF04272 Phospholamban: Phosph 59.9 8.6 0.00019 24.8 2.1 11 241-251 34-44 (52)
67 PF09125 COX2-transmemb: Cytoc 59.7 24 0.00053 21.7 3.9 32 228-262 4-35 (38)
68 TIGR01732 tiny_TM_bacill conse 59.4 9.9 0.00021 21.6 2.0 16 240-255 6-21 (26)
69 PF08372 PRT_C: Plant phosphor 58.9 78 0.0017 26.1 8.2 22 178-199 52-73 (156)
70 PF04728 LPP: Lipoprotein leuc 58.8 54 0.0012 22.2 7.8 50 179-235 4-53 (56)
71 PF10151 DUF2359: Uncharacteri 58.4 1.8E+02 0.004 28.3 11.9 64 176-239 195-262 (469)
72 TIGR00847 ccoS cytochrome oxid 58.3 17 0.00037 24.1 3.5 21 243-264 7-27 (51)
73 PF12606 RELT: Tumour necrosis 58.1 14 0.0003 24.5 2.9 20 245-264 6-25 (50)
74 TIGR01294 P_lamban phospholamb 57.2 10 0.00022 24.5 2.1 11 241-251 34-44 (52)
75 KOG3385 V-SNARE [Intracellular 57.1 74 0.0016 24.9 7.2 25 239-263 93-117 (118)
76 PRK00736 hypothetical protein; 56.6 66 0.0014 22.5 7.6 46 179-224 6-51 (68)
77 COG3197 FixS Uncharacterized p 56.0 16 0.00035 24.9 3.1 22 243-265 7-28 (58)
78 PRK11466 hybrid sensory histid 55.4 2.6E+02 0.0056 29.0 13.8 8 209-216 302-309 (914)
79 PF06143 Baculo_11_kDa: Baculo 55.2 15 0.00032 27.1 3.0 13 222-234 26-38 (84)
80 PHA03386 P10 fibrous body prot 55.2 66 0.0014 24.1 6.4 52 168-223 9-60 (94)
81 KOG3065 SNAP-25 (synaptosome-a 54.9 1.6E+02 0.0034 26.6 10.1 50 186-235 87-136 (273)
82 cd00179 SynN Syntaxin N-termin 53.8 76 0.0016 25.1 7.4 62 174-235 9-70 (151)
83 PRK11637 AmiB activator; Provi 52.8 2.1E+02 0.0046 27.2 12.1 61 176-236 73-133 (428)
84 KOG0862 Synaptobrevin/VAMP-lik 52.1 1.4E+02 0.0029 26.0 8.8 57 179-235 135-191 (216)
85 PRK04406 hypothetical protein; 50.5 91 0.002 22.3 7.9 49 176-224 9-57 (75)
86 PRK04325 hypothetical protein; 49.8 92 0.002 22.2 7.8 47 178-224 9-55 (74)
87 PF07889 DUF1664: Protein of u 49.3 1.3E+02 0.0029 23.8 8.0 35 198-232 74-108 (126)
88 PRK02119 hypothetical protein; 49.3 94 0.002 22.1 7.9 50 175-224 6-55 (73)
89 PF11315 Med30: Mediator compl 48.5 60 0.0013 26.6 5.8 19 2-20 56-74 (150)
90 PF02532 PsbI: Photosystem II 48.3 35 0.00075 20.9 3.3 19 247-265 8-26 (36)
91 PRK00295 hypothetical protein; 48.0 94 0.002 21.7 7.6 46 179-224 6-51 (68)
92 PRK15396 murein lipoprotein; P 47.5 1.1E+02 0.0023 22.2 7.1 29 178-206 39-67 (78)
93 COG3883 Uncharacterized protei 47.0 2E+02 0.0044 25.8 9.4 56 176-231 50-105 (265)
94 KOG1666 V-SNARE [Intracellular 46.5 2E+02 0.0043 25.0 9.3 55 201-260 165-219 (220)
95 PRK04654 sec-independent trans 46.3 1.9E+02 0.0041 25.1 8.8 24 181-204 30-53 (214)
96 PF02009 Rifin_STEVOR: Rifin/s 45.4 23 0.0005 32.3 3.3 20 245-264 261-280 (299)
97 PF13800 Sigma_reg_N: Sigma fa 45.3 17 0.00037 27.0 2.1 6 231-236 3-8 (96)
98 PRK11637 AmiB activator; Provi 45.0 2.8E+02 0.0061 26.3 11.3 60 178-237 68-127 (428)
99 PF00523 Fusion_gly: Fusion gl 44.9 15 0.00033 35.8 2.2 26 209-234 441-466 (490)
100 PRK14762 membrane protein; Pro 44.3 40 0.00088 18.9 2.9 11 246-256 7-17 (27)
101 PF11337 DUF3139: Protein of u 43.5 29 0.00062 25.3 3.0 14 247-260 12-25 (85)
102 PHA03395 p10 fibrous body prot 42.9 1.3E+02 0.0028 22.3 6.3 50 173-222 13-65 (87)
103 PTZ00046 rifin; Provisional 42.7 1.1E+02 0.0024 28.7 7.4 19 246-264 321-339 (358)
104 PF15188 CCDC-167: Coiled-coil 42.6 89 0.0019 23.1 5.5 26 212-237 42-67 (85)
105 PF10267 Tmemb_cc2: Predicted 41.7 3.2E+02 0.0069 26.1 13.5 50 177-226 268-318 (395)
106 cd00179 SynN Syntaxin N-termin 40.9 1.8E+02 0.0039 22.9 8.3 27 99-125 79-105 (151)
107 KOG3208 SNARE protein GS28 [In 40.3 1.9E+02 0.0041 25.3 7.9 22 102-123 90-111 (231)
108 TIGR02956 TMAO_torS TMAO reduc 39.8 4.6E+02 0.0099 27.3 13.5 29 207-235 300-328 (968)
109 PF06682 DUF1183: Protein of u 39.7 26 0.00056 32.3 2.7 19 246-264 159-177 (318)
110 PHA02909 hypothetical protein; 39.3 46 0.001 22.6 3.2 7 240-246 30-36 (72)
111 PF08650 DASH_Dad4: DASH compl 39.1 1.1E+02 0.0024 21.9 5.3 36 202-237 7-42 (72)
112 PF05478 Prominin: Prominin; 38.9 2.4E+02 0.0052 29.4 10.0 44 178-223 357-400 (806)
113 PF10717 ODV-E18: Occlusion-de 38.5 43 0.00094 24.6 3.2 17 245-261 29-45 (85)
114 smart00503 SynN Syntaxin N-ter 38.3 1.7E+02 0.0036 21.8 8.6 26 99-124 80-105 (117)
115 PF01034 Syndecan: Syndecan do 38.1 10 0.00022 26.4 -0.1 18 246-263 20-37 (64)
116 KOG0994 Extracellular matrix g 37.8 5.5E+02 0.012 28.4 12.0 80 3-91 1173-1255(1758)
117 PF04835 Pox_A9: A9 protein co 37.7 58 0.0013 21.8 3.4 30 236-265 17-49 (54)
118 KOG1691 emp24/gp25L/p24 family 36.9 1.5E+02 0.0034 25.6 6.8 26 178-203 134-159 (210)
119 PF05008 V-SNARE: Vesicle tran 35.9 1.5E+02 0.0033 20.7 9.5 48 72-123 29-76 (79)
120 TIGR01477 RIFIN variant surfac 35.6 2.7E+02 0.0058 26.1 8.7 19 246-264 316-334 (353)
121 PF10498 IFT57: Intra-flagella 35.4 3.3E+02 0.0073 25.5 9.5 18 103-120 330-347 (359)
122 PF09771 Tmemb_18A: Transmembr 35.4 1.4E+02 0.0031 23.6 6.0 44 218-261 5-49 (125)
123 COG4640 Predicted membrane pro 35.4 54 0.0012 31.1 4.1 17 221-237 28-44 (465)
124 PF06716 DUF1201: Protein of u 35.4 67 0.0015 20.9 3.3 8 257-264 26-33 (54)
125 PF05791 Bacillus_HBL: Bacillu 35.2 2.7E+02 0.0058 23.3 9.6 62 176-237 101-162 (184)
126 PF06422 PDR_CDR: CDR ABC tran 34.7 54 0.0012 24.8 3.4 24 239-262 49-72 (103)
127 PF13747 DUF4164: Domain of un 34.4 1.9E+02 0.0041 21.3 8.6 57 178-234 32-88 (89)
128 COG4068 Uncharacterized protei 33.8 54 0.0012 22.5 2.9 14 230-243 30-44 (64)
129 PF11239 DUF3040: Protein of u 33.7 1.8E+02 0.0039 20.9 5.9 23 206-228 9-31 (82)
130 PLN03160 uncharacterized prote 33.6 26 0.00057 30.3 1.8 8 239-246 36-43 (219)
131 PF11688 DUF3285: Protein of u 33.4 99 0.0022 19.8 3.8 31 229-259 12-43 (45)
132 PRK01773 hscB co-chaperone Hsc 32.5 3E+02 0.0064 23.0 9.3 107 2-122 61-168 (173)
133 PF07798 DUF1640: Protein of u 32.2 2.9E+02 0.0063 22.8 12.3 68 193-264 107-174 (177)
134 smart00503 SynN Syntaxin N-ter 32.1 2.1E+02 0.0046 21.2 8.7 61 174-234 11-71 (117)
135 COG2900 SlyX Uncharacterized p 31.9 1.9E+02 0.0041 20.6 7.1 46 178-223 8-53 (72)
136 PF06009 Laminin_II: Laminin D 31.8 15 0.00034 29.3 0.0 30 176-205 50-79 (138)
137 PF09851 SHOCT: Short C-termin 31.7 1.1E+02 0.0024 17.8 4.0 26 83-110 4-29 (31)
138 PF14523 Syntaxin_2: Syntaxin- 31.5 2.1E+02 0.0045 20.9 6.6 56 179-235 4-59 (102)
139 TIGR02132 phaR_Bmeg polyhydrox 31.4 3.2E+02 0.007 23.1 7.7 50 174-223 89-138 (189)
140 PF00509 Hemagglutinin: Haemag 30.9 2.8E+02 0.006 27.6 8.2 58 177-234 395-455 (550)
141 PF11044 TMEMspv1-c74-12: Plec 30.5 75 0.0016 20.5 2.9 16 242-257 4-19 (49)
142 PF05545 FixQ: Cbb3-type cytoc 30.5 62 0.0013 20.9 2.7 15 246-260 16-30 (49)
143 PF01601 Corona_S2: Coronaviru 30.1 20 0.00044 35.6 0.5 18 174-191 484-501 (610)
144 PHA03164 hypothetical protein; 29.9 82 0.0018 22.8 3.4 16 247-262 66-81 (88)
145 PHA02849 putative transmembran 29.7 86 0.0019 22.8 3.5 20 240-259 15-34 (82)
146 KOG1419 Voltage-gated K+ chann 29.6 1.3E+02 0.0028 30.0 5.7 42 220-263 72-113 (654)
147 PRK01026 tetrahydromethanopter 29.2 2.2E+02 0.0049 20.6 7.1 27 209-235 18-44 (77)
148 PF11137 DUF2909: Protein of u 29.1 95 0.0021 21.6 3.6 20 246-265 7-26 (63)
149 COG4537 ComGC Competence prote 28.9 68 0.0015 24.5 3.0 10 227-236 2-11 (107)
150 PF05781 MRVI1: MRVI1 protein; 28.8 1.4E+02 0.0031 29.5 5.9 20 71-90 251-270 (538)
151 PF06260 DUF1024: Protein of u 28.7 33 0.00071 24.9 1.2 18 5-22 24-41 (82)
152 PF04639 Baculo_E56: Baculovir 28.4 41 0.00088 30.5 2.0 25 240-264 275-299 (305)
153 PF02970 TBCA: Tubulin binding 28.3 2.4E+02 0.0053 20.7 6.6 58 180-238 23-80 (90)
154 PHA02855 anti-apoptotic membra 28.3 3.5E+02 0.0077 22.6 8.6 26 240-265 149-174 (180)
155 PHA02955 hypothetical protein; 28.1 74 0.0016 27.6 3.5 18 245-262 185-202 (213)
156 PF13131 DUF3951: Protein of u 27.6 92 0.002 20.7 3.1 7 258-264 22-28 (53)
157 PF12108 SF3a60_bindingd: Spli 27.4 59 0.0013 18.8 1.9 15 30-44 3-17 (28)
158 PRK02793 phi X174 lysis protei 27.4 2.3E+02 0.0049 20.0 6.6 21 174-194 18-38 (72)
159 PF00261 Tropomyosin: Tropomyo 27.3 4.1E+02 0.0089 23.0 9.5 62 174-235 88-149 (237)
160 PF13150 DUF3989: Protein of u 27.1 1.4E+02 0.0031 21.9 4.4 26 225-250 11-36 (85)
161 PF02646 RmuC: RmuC family; I 26.5 4.9E+02 0.011 23.6 9.3 64 175-242 10-73 (304)
162 PRK15048 methyl-accepting chem 26.4 6.1E+02 0.013 24.7 12.4 15 104-118 84-98 (553)
163 PF06084 Cytomega_TRL10: Cytom 26.3 27 0.00058 27.3 0.5 14 247-260 67-80 (150)
164 PF08114 PMP1_2: ATPase proteo 26.0 98 0.0021 19.6 2.8 9 253-261 23-31 (43)
165 PF05335 DUF745: Protein of un 25.9 4.1E+02 0.0089 22.5 8.6 59 174-232 112-170 (188)
166 PHA02675 ORF104 fusion protein 25.7 2.8E+02 0.006 20.5 7.5 41 189-229 41-81 (90)
167 PF07432 Hc1: Histone H1-like 25.3 3.1E+02 0.0067 21.5 6.1 48 183-237 2-49 (123)
168 PF06024 DUF912: Nucleopolyhed 25.3 69 0.0015 24.2 2.6 23 240-262 59-81 (101)
169 PF05615 THOC7: Tho complex su 25.2 3.4E+02 0.0074 21.3 11.2 84 8-91 16-104 (139)
170 PF00804 Syntaxin: Syntaxin; 25.1 2.6E+02 0.0057 19.9 8.3 62 174-235 10-71 (103)
171 smart00502 BBC B-Box C-termina 25.0 2.9E+02 0.0063 20.5 8.6 33 205-237 60-92 (127)
172 PF04102 SlyX: SlyX; InterPro 24.9 2.4E+02 0.0053 19.5 6.5 21 174-194 14-34 (69)
173 PF08320 PIG-X: PIG-X / PBN1; 24.8 63 0.0014 27.6 2.6 24 241-264 183-206 (207)
174 PF12325 TMF_TATA_bd: TATA ele 24.8 3.4E+02 0.0074 21.2 7.2 23 103-125 91-113 (120)
175 COG3630 OadG Na+-transporting 24.6 80 0.0017 23.2 2.6 16 247-262 20-35 (84)
176 KOG4331 Polytopic membrane pro 24.6 43 0.00093 34.7 1.7 39 227-265 138-177 (865)
177 PRK04598 tatA twin arginine tr 24.4 65 0.0014 23.6 2.1 13 241-253 6-18 (81)
178 PRK02958 tatA twin arginine tr 24.1 77 0.0017 22.7 2.4 12 242-253 7-18 (73)
179 CHL00024 psbI photosystem II p 24.0 34 0.00073 20.9 0.5 17 249-265 10-26 (36)
180 PF15048 OSTbeta: Organic solu 23.7 1.2E+02 0.0027 24.0 3.7 34 227-260 21-54 (125)
181 PF00737 PsbH: Photosystem II 23.7 1.2E+02 0.0026 20.2 3.0 17 245-261 31-47 (52)
182 PRK00720 tatA twin arginine tr 23.6 78 0.0017 23.0 2.4 13 242-254 7-19 (78)
183 PF05633 DUF793: Protein of un 23.1 5.2E+02 0.011 24.6 8.4 82 32-124 283-364 (389)
184 PF10168 Nup88: Nuclear pore c 23.0 8.5E+02 0.018 25.2 11.0 51 175-225 555-605 (717)
185 PF05814 DUF843: Baculovirus p 23.0 1E+02 0.0022 22.7 2.9 26 232-257 16-41 (83)
186 PF11057 Cortexin: Cortexin of 22.9 1.2E+02 0.0027 21.8 3.2 22 241-262 30-51 (81)
187 PRK09738 small toxic polypepti 22.6 94 0.002 20.8 2.4 16 240-255 8-23 (52)
188 PF04906 Tweety: Tweety; Inte 22.3 4E+02 0.0087 25.3 7.7 12 253-264 198-209 (406)
189 PRK03554 tatA twin arginine tr 22.1 76 0.0017 23.6 2.1 15 241-255 6-20 (89)
190 PF15361 RIC3: Resistance to i 22.1 1.1E+02 0.0024 25.0 3.4 13 252-264 91-103 (152)
191 PRK00736 hypothetical protein; 22.0 2.8E+02 0.0062 19.3 6.6 20 174-193 15-34 (68)
192 PRK09759 small toxic polypepti 21.9 1.1E+02 0.0023 20.3 2.6 15 241-255 7-21 (50)
193 PF08614 ATG16: Autophagy prot 21.9 4.8E+02 0.01 21.8 9.2 64 174-237 112-175 (194)
194 PRK10884 SH3 domain-containing 21.8 5.2E+02 0.011 22.2 13.3 33 197-232 133-165 (206)
195 PF01105 EMP24_GP25L: emp24/gp 21.7 31 0.00066 27.8 0.0 25 177-201 111-135 (183)
196 KOG3156 Uncharacterized membra 21.7 4.6E+02 0.0099 22.8 7.1 27 98-124 113-139 (220)
197 PF06160 EzrA: Septation ring 21.5 8.1E+02 0.017 24.3 19.3 21 3-23 206-226 (560)
198 PF04859 DUF641: Plant protein 21.4 4.3E+02 0.0093 21.1 7.4 40 71-122 83-122 (131)
199 KOG0980 Actin-binding protein 21.4 7.9E+02 0.017 26.1 9.7 76 182-257 718-807 (980)
200 PF12459 DUF3687: D-Ala-teicho 21.3 1E+02 0.0022 19.7 2.3 23 239-261 7-29 (42)
201 PF06624 RAMP4: Ribosome assoc 21.3 43 0.00094 23.3 0.7 24 240-263 38-61 (63)
202 KOG3647 Predicted coiled-coil 21.0 6.3E+02 0.014 22.9 10.4 23 33-55 45-67 (338)
203 PF03938 OmpH: Outer membrane 20.9 2.8E+02 0.0062 22.0 5.7 49 72-120 47-95 (158)
204 PRK00295 hypothetical protein; 20.8 3E+02 0.0065 19.1 6.6 19 174-192 15-33 (68)
205 PF12420 DUF3671: Protein of u 20.8 2.4E+02 0.0051 21.5 4.8 20 215-234 23-42 (104)
206 PRK02119 hypothetical protein; 20.6 3.2E+02 0.0069 19.3 6.6 20 174-193 19-38 (73)
207 PF04568 IATP: Mitochondrial A 20.6 2.6E+02 0.0057 21.2 4.9 24 193-216 77-100 (100)
208 PRK09400 secE preprotein trans 20.5 2.9E+02 0.0064 18.9 6.7 22 218-239 6-27 (61)
209 PRK02655 psbI photosystem II r 20.5 43 0.00093 20.7 0.5 17 249-265 10-26 (38)
210 PF01102 Glycophorin_A: Glycop 20.3 1.4E+02 0.003 23.6 3.4 16 249-264 78-93 (122)
211 KOG0946 ER-Golgi vesicle-tethe 20.2 7.5E+02 0.016 26.1 9.2 67 166-232 659-725 (970)
212 PF09451 ATG27: Autophagy-rela 20.2 1.1E+02 0.0024 27.2 3.3 9 255-263 215-223 (268)
213 PF11932 DUF3450: Protein of u 20.1 5.9E+02 0.013 22.2 11.6 43 177-219 55-97 (251)
214 PRK15396 murein lipoprotein; P 20.1 3.5E+02 0.0076 19.6 8.0 26 211-236 51-76 (78)
215 PF05356 Phage_Coat_B: Phage C 20.0 1.4E+02 0.0029 21.6 3.0 19 246-264 63-81 (83)
No 1
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.4e-28 Score=212.85 Aligned_cols=219 Identities=21% Similarity=0.278 Sum_probs=151.5
Q ss_pred cCCCCChHHHHHHHHH---HHHHHHHHHHhhhhhhhhhHHhhhhhHHHHHHHHHHHhhHHHHHHHHHH--hcCCCCHHHH
Q 039173 29 NAHGDDAFARFYATVE---SEIDKALLKAETASMETNRAAAVAMKAEVRRTKARLLEEVPKLQKLARK--KVKGLSKEEQ 103 (265)
Q Consensus 29 ~~~~~Dpw~~~~~~~~---~~l~~~l~~~~~~~~~~~~~~~~~~~~eiR~~l~~l~~~l~~L~~~l~k--k~~~lt~~El 103 (265)
|.+..|||+.++.++. +.++..++++++..+. ....+...+..+|..+....++|+.+...+.+ ..+++++.|+
T Consensus 1 ~~~~~Dp~~~v~~e~~k~~~~~~~~~~r~~~~~~~-~~~~~~~~t~~lr~~i~~~~edl~~~~~il~~~~~~~~ide~El 79 (235)
T KOG3202|consen 1 MLSSEDPFFRVKNETLKLSEEIQGLYQRRSELLKD-TGSDAEELTSVLRRSIEEDLEDLDELISILERNPSKFGIDEFEL 79 (235)
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHhHHHHHHHHHHHHHHHhCcccccCcHHHH
Confidence 4567899999999987 5566777777765443 12234455667774454444444444444222 3468999999
Q ss_pred HHHHHHHHHHHHHHHhcccccccc---Cc--CCCCCCCCCCCCCcccCCCCCCCCccccCchhHHHHHHHHHHHHhhhhh
Q 039173 104 ETRHDLVLGLSERIEAIPDGNTNA---TK--ANGGWATSASNKNIKFDSDGNIGDDFFQQSEESSQFRQEYEMRKMKQDQ 178 (265)
Q Consensus 104 ~~R~~~v~~l~~~~~~l~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~te~t~~~qQq~~~~~~eqD~ 178 (265)
.+|+.++.+++.++.+++..+... +. +..+.++...+. ..+...+..+.. ......++||+ .+ ++||+
T Consensus 80 ~~R~~~i~~lr~q~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~--~~~~~~~~~~~D--~v~~~~~~qqq-m~--~eQDe 152 (235)
T KOG3202|consen 80 SRRRRFIDNLRTQLRQMKSKMAMSGFANSNIRDILLGPEKSPN--LDEAMSRASGLD--NVQEIVQLQQQ-ML--QEQDE 152 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhcCCCCCCc--hhhhHHHhhccC--cHHHHHHHHHH-HH--HHHHH
Confidence 999999999999999999887652 11 222222111110 001100111110 01333344444 44 89999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHH
Q 039173 179 GLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFCIDIILLCVILGI 255 (265)
Q Consensus 179 ~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~ci~i~llivil~l 255 (265)
+||.|+++|+++|++|..||+|+++|+.|||+++..||.|..+|.++++++.++.+...+|++||++++++++++++
T Consensus 153 ~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~~~s~~~~~~~il~l~~~~~lv 229 (235)
T KOG3202|consen 153 GLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNRMASQCSQWCAILLLVGLLLLV 229 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999877889899555444444433
No 2
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=1.1e-13 Score=106.03 Aligned_cols=83 Identities=22% Similarity=0.320 Sum_probs=72.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Q 039173 174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFCIDIILLCVIL 253 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~ci~i~llivil 253 (265)
.|.|+.++.|.+-|..||.++.+||.|++.||++||.+++++|+|...|..++.|++.+.+. +..+.||+.+++++|.+
T Consensus 32 ~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~-sg~~l~~~m~~f~lV~~ 110 (118)
T KOG3385|consen 32 RENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR-SGISLLCWMAVFSLVAF 110 (118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999998 44677886555555444
Q ss_pred HHHH
Q 039173 254 GIAS 257 (265)
Q Consensus 254 ~l~~ 257 (265)
+|+.
T Consensus 111 fi~~ 114 (118)
T KOG3385|consen 111 FILW 114 (118)
T ss_pred HHhh
Confidence 4443
No 3
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=99.36 E-value=5.9e-12 Score=88.01 Aligned_cols=62 Identities=32% Similarity=0.566 Sum_probs=59.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHc
Q 039173 175 KQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKV 236 (265)
Q Consensus 175 eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~ 236 (265)
++|+.|+.|+..|.+|++++.+|+.||++|+++||.|+.+|+.|..+|..++++|+++.++.
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~ 62 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999999999999999999999999998864
No 4
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=99.02 E-value=1.7e-09 Score=74.22 Aligned_cols=58 Identities=33% Similarity=0.566 Sum_probs=56.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 039173 174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKE 231 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~ 231 (265)
+++|+.|+.|+..|..+++++.+|+.||..|+++||.++..++.+...++.+++++.+
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~k 59 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKK 59 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999999876
No 5
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=1.4e-07 Score=84.03 Aligned_cols=91 Identities=14% Similarity=0.206 Sum_probs=77.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCC--CchHHHHHHHHH
Q 039173 174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSS--RNFCIDIILLCV 251 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~--~~~ci~i~lliv 251 (265)
++..+++.+|...|..+.+|..+++.-|.+|++++|.|+..|+++...+..++..|.+..+..++. ..||+.++++++
T Consensus 176 eeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~~~ll~v~~~v 255 (269)
T KOG0811|consen 176 EEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKKCILLLVGGPV 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHH
Confidence 678899999999999999999999999999999999999999999999999999999999887654 233344466666
Q ss_pred HHHHHHHHHHHhc
Q 039173 252 ILGIASYLYQALK 264 (265)
Q Consensus 252 il~l~~~~~~~~k 264 (265)
+|++++++|..++
T Consensus 256 ~lii~l~i~~~~~ 268 (269)
T KOG0811|consen 256 GLIIGLIIAGIAA 268 (269)
T ss_pred HHHHHHHHHHhhc
Confidence 6666667776554
No 6
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=98.92 E-value=9.2e-09 Score=71.74 Aligned_cols=58 Identities=36% Similarity=0.570 Sum_probs=56.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 039173 174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKE 231 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~ 231 (265)
+++|+.|+.|+..+..+++++..|+.+|..|+++||.++..++.+...+..+++++++
T Consensus 8 ~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~ 65 (66)
T smart00397 8 EERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKK 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 7999999999999999999999999999999999999999999999999999999875
No 7
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=98.87 E-value=3.1e-08 Score=87.06 Aligned_cols=69 Identities=22% Similarity=0.414 Sum_probs=64.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCch
Q 039173 174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNF 242 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~ 242 (265)
.+-|+++..|+.+|..+.++..++|.=|.+|++++|.||..++.|...++.|++.|.+.....+..++|
T Consensus 191 ~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~ 259 (283)
T COG5325 191 TERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKC 259 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccc
Confidence 678999999999999999999999999999999999999999999999999999999999988765554
No 8
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=4.2e-07 Score=80.63 Aligned_cols=152 Identities=13% Similarity=0.207 Sum_probs=101.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhcccccccc--------CcCCC-C--CCCCCCCCCcccCCCCCCCCccccCchhHHHH
Q 039173 97 GLSKEEQETRHDLVLGLSERIEAIPDGNTNA--------TKANG-G--WATSASNKNIKFDSDGNIGDDFFQQSEESSQF 165 (265)
Q Consensus 97 ~lt~~El~~R~~~v~~l~~~~~~l~~~~~~~--------~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~te~t~~~ 165 (265)
..++.|.--|.++...+-.++..+...|... ..+.. . +. ....+... .+...++... .+
T Consensus 129 ~~~~~e~~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e-~~~~~~~~----~~dd~d~~~~-----~~ 198 (305)
T KOG0809|consen 129 QLSPSERLLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYE-DSLDNTVD----LPDDEDFSDR-----TF 198 (305)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchh-hhcccccc----Ccchhhhhhh-----hH
Confidence 5789999999999988888888876665421 00100 0 00 00001100 0101112111 12
Q ss_pred HHHHHHHH-------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccC
Q 039173 166 RQEYEMRK-------MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRS 238 (265)
Q Consensus 166 qQq~~~~~-------~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~ 238 (265)
++++.|.. .+-++++-+|..+|..|.++..+++.-|-+|+-++|.||-.++.|..+++.|.+.+.+.-...+.
T Consensus 199 qe~ql~~~e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~ 278 (305)
T KOG0809|consen 199 QEQQLMLFENNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKR 278 (305)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhc
Confidence 11111111 45678899999999999999999999999999999999999999999999999999999888887
Q ss_pred CCchHHHHHHHHHHHHHHHH
Q 039173 239 SRNFCIDIILLCVILGIASY 258 (265)
Q Consensus 239 ~~~~ci~i~llivil~l~~~ 258 (265)
.+++|++.+|++++++++++
T Consensus 279 ~~k~~~i~~L~l~ii~llvl 298 (305)
T KOG0809|consen 279 NKKMKVILMLTLLIIALLVL 298 (305)
T ss_pred CCceEehHHHHHHHHHHHHH
Confidence 77776555555554444443
No 9
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=7.6e-09 Score=92.12 Aligned_cols=60 Identities=38% Similarity=0.510 Sum_probs=58.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 039173 174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETL 233 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~ 233 (265)
.++|..|++|+.++++||.||.+||.||+.||+.||.|++++|+.+.++..+|+|+++++
T Consensus 214 deiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~kLl 273 (273)
T KOG3065|consen 214 DEIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKKLL 273 (273)
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHhcC
Confidence 589999999999999999999999999999999999999999999999999999999874
No 10
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=1.1e-05 Score=71.47 Aligned_cols=84 Identities=17% Similarity=0.284 Sum_probs=72.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHH
Q 039173 177 DQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFCIDIILLCVILGIA 256 (265)
Q Consensus 177 D~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~ci~i~llivil~l~ 256 (265)
-..+..|+.+|..|..+...+..-|.+|.|++..||+.||.+.-.+..+...|-+.....++.+|.++-|+.++++|+|+
T Consensus 226 ~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwLmvkiF~i~ivFflv 305 (311)
T KOG0812|consen 226 AKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWLMVKIFGILIVFFLV 305 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 35677899999999999999999999999999999999999999999999999999999887766666666666666665
Q ss_pred HHHH
Q 039173 257 SYLY 260 (265)
Q Consensus 257 ~~~~ 260 (265)
+|+|
T Consensus 306 fvlf 309 (311)
T KOG0812|consen 306 FVLF 309 (311)
T ss_pred HHHh
Confidence 5554
No 11
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=2.4e-08 Score=90.21 Aligned_cols=68 Identities=18% Similarity=0.305 Sum_probs=62.2
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCC
Q 039173 172 RKMKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSS 239 (265)
Q Consensus 172 ~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~ 239 (265)
..++-...+-.|..++..|+++..+|...|+.|++|+|.|+.+|.++...+..++..+++.....+..
T Consensus 200 Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkka 267 (297)
T KOG0810|consen 200 EIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKA 267 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44667788999999999999999999999999999999999999999999999999999888776654
No 12
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=98.79 E-value=4.6e-08 Score=74.39 Aligned_cols=88 Identities=20% Similarity=0.242 Sum_probs=64.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhh---hhh-hhHHhhhhhHHHHHHHHHHHhhHHHHHHHHH--H---hcCCCCHHHHH
Q 039173 34 DAFARFYATVESEIDKALLKAETAS---MET-NRAAAVAMKAEVRRTKARLLEEVPKLQKLAR--K---KVKGLSKEEQE 104 (265)
Q Consensus 34 Dpw~~~~~~~~~~l~~~l~~~~~~~---~~~-~~~~~~~~~~eiR~~l~~l~~~l~~L~~~l~--k---k~~~lt~~El~ 104 (265)
|||+.+.+++...|..+-....... ... +......+..+++..|..++++|.+|++++. . .+|+|++.|+.
T Consensus 1 DPF~~v~~ev~~sl~~l~~~~~~~~~~~~~~~~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~ 80 (97)
T PF09177_consen 1 DPFFVVKDEVQSSLDRLESLYRRWQRLRSDTSSSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEIS 80 (97)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHTTHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHH
Confidence 8999999998877776533322111 111 1122345668999999999999999999972 1 34699999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q 039173 105 TRHDLVLGLSERIEAIP 121 (265)
Q Consensus 105 ~R~~~v~~l~~~~~~l~ 121 (265)
+|+.+|..++.++..|+
T Consensus 81 ~Rr~fv~~~~~~i~~~k 97 (97)
T PF09177_consen 81 RRRQFVSAIRNQIKQMK 97 (97)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999998764
No 13
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=98.57 E-value=2e-06 Score=76.37 Aligned_cols=80 Identities=23% Similarity=0.240 Sum_probs=66.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Q 039173 174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFCIDIILLCVIL 253 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~ci~i~llivil 253 (265)
..|++-.++|..-...||+.+..+++-|..-+..|+.....+|+....|+.+..|++...++. ++||.|.++++++++
T Consensus 163 ~~QE~L~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~--~~~~~~~~i~~v~~~ 240 (251)
T PF09753_consen 163 NLQEDLTEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKS--WGCWTWLMIFVVIIV 240 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999987764 333433333333333
Q ss_pred HH
Q 039173 254 GI 255 (265)
Q Consensus 254 ~l 255 (265)
||
T Consensus 241 Fi 242 (251)
T PF09753_consen 241 FI 242 (251)
T ss_pred HH
Confidence 33
No 14
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=98.48 E-value=7.9e-07 Score=76.44 Aligned_cols=85 Identities=21% Similarity=0.334 Sum_probs=68.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcc---CCCchHHHHHHHHH
Q 039173 175 KQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVR---SSRNFCIDIILLCV 251 (265)
Q Consensus 175 eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~---~~~~~ci~i~lliv 251 (265)
.-.+.|-.|..++..|-++..+|.++|.+|.++.|.++.++..+...+..++..+.+.++..| ...++|++|+++ +
T Consensus 182 ~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~c~gI~~i-i 260 (280)
T COG5074 182 ARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKKKIRCYGICFI-I 260 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhcceehhhhHHH-H
Confidence 445778999999999999999999999999999999999999999999999988888877654 346667555444 4
Q ss_pred HHHHHHHHH
Q 039173 252 ILGIASYLY 260 (265)
Q Consensus 252 il~l~~~~~ 260 (265)
|.||++|+|
T Consensus 261 i~viv~vv~ 269 (280)
T COG5074 261 IIVIVVVVF 269 (280)
T ss_pred HHHHHHHHh
Confidence 444444443
No 15
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.00029 Score=60.17 Aligned_cols=211 Identities=12% Similarity=0.149 Sum_probs=115.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhhhHHHHHHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 039173 34 DAFARFYATVESEIDKALLKAETASMETNRAAAVAMKAEVRRTKARLLEEVPKLQKLARKKVKGLSKEEQETRHDLVLGL 113 (265)
Q Consensus 34 Dpw~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~eiR~~l~~l~~~l~~L~~~l~kk~~~lt~~El~~R~~~v~~l 113 (265)
..|..-|..+..+|.+-+...-+...+ .+ ...=.+|...+..+.+.|..++--+ ..+++..-.--...+.++
T Consensus 6 e~yEqqy~~l~a~it~k~~~~~~~~~~-ek---k~~l~~i~~~leEa~ell~qMdlEv----r~lp~~~Rs~~~~KlR~y 77 (220)
T KOG1666|consen 6 EGYEQQYRELSAEITKKIGRALSLPGS-EK---KQLLSEIDSKLEEANELLDQMDLEV----RELPPNFRSSYLSKLREY 77 (220)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhcCCch-HH---HHHHHHHHHhHHHHHHHHHHHHHHH----HhCCchhhhHHHHHHHHH
Confidence 346667777777777666544322111 11 1122356666666666665554432 245555433344455566
Q ss_pred HHHHHhccccccccCcCCCCCCCCCCCCCcccCCCCCCCCccccCchhHHHHHHHHHHHH---hhhhhhHHHHHHHHHHH
Q 039173 114 SERIEAIPDGNTNATKANGGWATSASNKNIKFDSDGNIGDDFFQQSEESSQFRQEYEMRK---MKQDQGLDVISEGLDTL 190 (265)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~te~t~~~qQq~~~~~---~eqD~~Ld~l~~~v~~l 190 (265)
++.+++++..+...+.++...|... ....... .++. ..+. ..+++..+.- ..=-+.|..=+.++...
T Consensus 78 ksdl~~l~~e~k~~~~~~~~~~~rd-----e~~~~~~-add~-~~~~---dQR~rLl~nTerLeRst~rl~ds~Ria~ET 147 (220)
T KOG1666|consen 78 KSDLKKLKRELKRTTSRNLNAGDRD-----ELLEALE-ADDQ-NISA---DQRARLLQNTERLERSTDRLKDSQRIALET 147 (220)
T ss_pred HHHHHHHHHHHHHhhccccccchHH-----HHHhhhh-cccc-ccch---hHHHHHHhhhHHHHHhHHHHHHHHHHHHHH
Confidence 6666666655543332221111100 0000000 0000 0000 1111222111 11224455556777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHHHHHHh
Q 039173 191 KNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFCIDIILLCVILGIASYLYQAL 263 (265)
Q Consensus 191 k~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~ci~i~llivil~l~~~~~~~~ 263 (265)
-++|..|-++|..|.+-|..--+-.-.|++.|.++.+-++.+..+.- .++|.+.+++++.++++++++|+-+
T Consensus 148 EqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~-~nk~~~~aii~~l~~~il~ilY~kf 219 (220)
T KOG1666|consen 148 EQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLI-RNKFTLTAIIALLVLAILLILYSKF 219 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999999999999999999999999999888888887653 3556556666666666666666644
No 16
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=97.54 E-value=0.0019 Score=55.48 Aligned_cols=89 Identities=15% Similarity=0.174 Sum_probs=68.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchH-HHH-HHHHHH
Q 039173 175 KQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFC-IDI-ILLCVI 252 (265)
Q Consensus 175 eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~c-i~i-~llivi 252 (265)
-|.+-.+.+..-++.+|..+.+.++-+.+-|+-+......+|.....|..++.++.+--++.+ .+|. |.+ +++|+.
T Consensus 152 lQeeLaesll~LArslKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~--s~wf~~~miI~v~~s 229 (244)
T KOG2678|consen 152 LQEELAESLLKLARSLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKL--SYWFYITMIIFVILS 229 (244)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhh--hHHHHHHHHHHHHHH
Confidence 456777889999999999999999999999999999999999999999999999999877733 3332 322 333333
Q ss_pred HHHHHHHHHHhcC
Q 039173 253 LGIASYLYQALKN 265 (265)
Q Consensus 253 l~l~~~~~~~~k~ 265 (265)
||..+++..++|+
T Consensus 230 FVsMiliiqifkk 242 (244)
T KOG2678|consen 230 FVSMILIIQIFKK 242 (244)
T ss_pred HHHHHHHHHHhhc
Confidence 3444455566664
No 17
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=97.35 E-value=0.0064 Score=45.57 Aligned_cols=82 Identities=15% Similarity=0.123 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHH
Q 039173 178 QGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFCIDIILLCVILGIAS 257 (265)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~ci~i~llivil~l~~ 257 (265)
+.|......+..--+.+..--++|++|+.-|..+++..+...+.|..+.+-++.+.+... ..+|.++..++++++++++
T Consensus 8 ~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~-~D~~li~~~~~~f~~~v~y 86 (92)
T PF03908_consen 8 ESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDK-TDRILIFFAFLFFLLVVLY 86 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHH
Confidence 445555555555556666777889999999999999999999999999999999988753 4555555555555555555
Q ss_pred HHH
Q 039173 258 YLY 260 (265)
Q Consensus 258 ~~~ 260 (265)
|+|
T Consensus 87 I~~ 89 (92)
T PF03908_consen 87 ILW 89 (92)
T ss_pred Hhh
Confidence 554
No 18
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=97.06 E-value=0.016 Score=43.02 Aligned_cols=59 Identities=19% Similarity=0.280 Sum_probs=33.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 039173 177 DQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLK 235 (265)
Q Consensus 177 D~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~ 235 (265)
++.+..+...|...+.+-..=-+.+-+-++-|+.|++..+.-...=..=.+..+++-++
T Consensus 2 ~dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~ 60 (89)
T PF00957_consen 2 NDKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRK 60 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34555666666666655444445566666777777776665554444444444444444
No 19
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.035 Score=50.50 Aligned_cols=80 Identities=15% Similarity=0.168 Sum_probs=58.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Q 039173 174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFCIDIILLCVIL 253 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~ci~i~llivil 253 (265)
++....|.+|++.-..+..+...=|+-|+.=..-...-.+.|+.+.+.++.|.. .-++++.+.++||+++++++++
T Consensus 209 k~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~----~qkkaRK~k~i~ii~~iii~~v 284 (297)
T KOG0810|consen 209 KKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVK----YQKKARKWKIIIIIILIIIIVV 284 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhceeeeehHHHHHHHH
Confidence 567888999999988888888888888888888888888889999999888844 4455566766664444443333
Q ss_pred HHHH
Q 039173 254 GIAS 257 (265)
Q Consensus 254 ~l~~ 257 (265)
++++
T Consensus 285 ~v~~ 288 (297)
T KOG0810|consen 285 LVVV 288 (297)
T ss_pred Hhhh
Confidence 3333
No 20
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.035 Score=43.23 Aligned_cols=35 Identities=14% Similarity=0.122 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHc
Q 039173 202 DRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKV 236 (265)
Q Consensus 202 ~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~ 236 (265)
=+=.+-|++|++..|..+..=..=.+...++-+++
T Consensus 53 lER~ekL~~L~drad~L~~~as~F~~~A~klkrk~ 87 (116)
T KOG0860|consen 53 LERGEKLDELDDRADQLQAGASQFEKTAVKLKRKM 87 (116)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677888777776665555555555555553
No 21
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=0.086 Score=45.35 Aligned_cols=155 Identities=17% Similarity=0.177 Sum_probs=89.6
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhccccccccCcCCCCCCCCCCCCCcccCCCC
Q 039173 70 KAEVRRTKARLLEEVPKLQKLARKKVKGLSKEEQETRHDLVLGLSERIEAIPDGNTNATKANGGWATSASNKNIKFDSDG 149 (265)
Q Consensus 70 ~~eiR~~l~~l~~~l~~L~~~l~kk~~~lt~~El~~R~~~v~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (265)
-.++...+.++.+.+..|+..+ .+ ...+...-.+++ +.+++.++..++..+.....++.-..-........++..-
T Consensus 35 ~~~i~~sI~~~~s~~~rl~~~~-~~-epp~~rq~~rlr--~dQl~~d~~~l~~~l~~~~~R~~~r~~~~~er~~lL~~~~ 110 (213)
T KOG3251|consen 35 ENSIQRSIDQYASRCQRLDVLV-SK-EPPKSRQAARLR--VDQLLEDVEHLQTSLRTSMNRNNRREQQARERVELLDRRF 110 (213)
T ss_pred HHHHHHhHHHHHHHHHHHHhHh-hc-CCCCcHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCC
Confidence 3467777778887777777763 22 234455555555 7788888777766554321111000000000000000000
Q ss_pred CCCCccccCchhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 039173 150 NIGDDFFQQSEESSQFRQEYEMRKMKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRL 229 (265)
Q Consensus 150 ~~~~~~~~~te~t~~~qQq~~~~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l 229 (265)
+.+ + +.-+.++ +-. ..-+..|..=+..+..+=..|.+|=+-+.+|+.-|......|-.....|.-.+.-|
T Consensus 111 ~~~-~----~~~~~~~--D~e---l~~~d~l~~s~~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti 180 (213)
T KOG3251|consen 111 TNG-A----TGTSIPF--DEE---LQENDSLKRSHNMLDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLGLSNQTI 180 (213)
T ss_pred CCC-C----ccCCCcc--hHH---HHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 000 0 0000000 001 12234566667777777888999999999999999999999999999999888888
Q ss_pred HHHHHHccC
Q 039173 230 KETLLKVRS 238 (265)
Q Consensus 230 ~~~~~~~~~ 238 (265)
.-|-+..+.
T Consensus 181 ~lIeRR~~~ 189 (213)
T KOG3251|consen 181 RLIERRVRE 189 (213)
T ss_pred HHHHHHHHh
Confidence 888777764
No 22
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=0.21 Score=43.14 Aligned_cols=59 Identities=20% Similarity=0.226 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHc
Q 039173 178 QGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKV 236 (265)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~ 236 (265)
..|+.=...|..+=.+|.+-.+-+..|+.+|..+..+|-.+..++=..|.=+.++..+-
T Consensus 149 ~~in~s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~kk 207 (231)
T KOG3208|consen 149 DHINNSIRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIKK 207 (231)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 45667777788888899999999999999999999999999999999999999987773
No 23
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.09 E-value=0.1 Score=47.36 Aligned_cols=71 Identities=20% Similarity=0.138 Sum_probs=64.1
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchH
Q 039173 173 KMKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFC 243 (265)
Q Consensus 173 ~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~c 243 (265)
..+|+++...|...|-.+-.+=..|.+-|-.|.+-+|-|-+.+..++..++.+|..+.++...++..+.|.
T Consensus 227 ~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~ 297 (316)
T KOG3894|consen 227 LNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFL 297 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHH
Confidence 36778888899999999999999999999999999999999999999999999999999999877656555
No 24
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=95.40 E-value=0.3 Score=33.88 Aligned_cols=59 Identities=20% Similarity=0.238 Sum_probs=54.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 039173 177 DQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLK 235 (265)
Q Consensus 177 D~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~ 235 (265)
...|+.-...+...-++|.++-.+|..|++.|..+..+++.+...|..+++-++.+-++
T Consensus 7 ~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR 65 (66)
T PF12352_consen 7 SDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRR 65 (66)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcc
Confidence 45788888899999999999999999999999999999999999999999999888654
No 25
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=94.81 E-value=0.54 Score=33.42 Aligned_cols=51 Identities=20% Similarity=0.272 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchHHHHHHH
Q 039173 195 LDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFCIDIILL 249 (265)
Q Consensus 195 ~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~ci~i~ll 249 (265)
..+...++.+.+-++.++..-+.....+...+.+++++-.. .+|.+.+++=
T Consensus 9 ~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n----~kW~~r~iiG 59 (71)
T PF10779_consen 9 NRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSN----TKWIWRTIIG 59 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 34556666677788888888888888888999999988765 4565554333
No 26
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=94.29 E-value=0.98 Score=40.40 Aligned_cols=80 Identities=18% Similarity=0.247 Sum_probs=65.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Q 039173 174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFCIDIILLCVIL 253 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~ci~i~llivil 253 (265)
...-+++-+|..+-..|+.+...=|.-|+.=..=|+.+.+.+..|+..|.+|+..=++. +.|+.+|+++++++.++
T Consensus 198 ~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt----~k~~~~~Llil~vv~lf 273 (283)
T COG5325 198 KNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRT----KKCRFYLLLILLVVLLF 273 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhh----ccchhhHHHHHHHHHHH
Confidence 56778999999999999999999999999999999999999999999999998877654 45889996555444444
Q ss_pred HHHH
Q 039173 254 GIAS 257 (265)
Q Consensus 254 ~l~~ 257 (265)
++++
T Consensus 274 v~l~ 277 (283)
T COG5325 274 VSLI 277 (283)
T ss_pred HHHH
Confidence 4433
No 27
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=92.90 E-value=1.8 Score=37.94 Aligned_cols=77 Identities=12% Similarity=0.118 Sum_probs=45.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHH
Q 039173 175 KQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFCIDIILLCVILG 254 (265)
Q Consensus 175 eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~ci~i~llivil~ 254 (265)
+.-+-+..+++-|..+.++ |+.=+.-+.+...+|....+.+.++-+-....-++-=-|-..|++|+++|+.++
T Consensus 196 el~qLfndm~~~V~eq~e~-------Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~c~gI~~iii~viv~vv 268 (280)
T COG5074 196 ELTQLFNDMEELVIEQQEN-------VDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKKKIRCYGICFIIIIVIVVVV 268 (280)
T ss_pred HHHHHHHHHHHHHHhhcch-------HHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhcceehhhhHHHHHHHHHHHH
Confidence 3333444444444444444 444445566677788888888888877765555544447667866666666555
Q ss_pred HHHH
Q 039173 255 IASY 258 (265)
Q Consensus 255 l~~~ 258 (265)
+-++
T Consensus 269 ~~v~ 272 (280)
T COG5074 269 FKVV 272 (280)
T ss_pred hccc
Confidence 4333
No 28
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.21 E-value=4 Score=36.66 Aligned_cols=81 Identities=16% Similarity=0.144 Sum_probs=65.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchHHHH-HHHHHH
Q 039173 174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFCIDI-ILLCVI 252 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~ci~i-~llivi 252 (265)
.+...++-++.+....|..|...=|+-|+.=..=++.....|..++..|.+|.+-=++..++. |-..|+.+ ++|+++
T Consensus 183 ~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~--~~ll~v~~~v~lii~ 260 (269)
T KOG0811|consen 183 EQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKK--CILLLVGGPVGLIIG 260 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch--hhhhHHHHHHHHHHH
Confidence 677888889999999999999999999999999999999999999999999987766666664 76677655 444444
Q ss_pred HHHH
Q 039173 253 LGIA 256 (265)
Q Consensus 253 l~l~ 256 (265)
++++
T Consensus 261 l~i~ 264 (269)
T KOG0811|consen 261 LIIA 264 (269)
T ss_pred HHHH
Confidence 4443
No 29
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=90.39 E-value=6.1 Score=29.64 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=37.2
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHc-cCCCchHHHH
Q 039173 168 EYEMRKMKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKV-RSSRNFCIDI 246 (265)
Q Consensus 168 q~~~~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~-~~~~~~ci~i 246 (265)
.+..+++.....|++|..++..+..+ .+.++-.+|.-... +..+++.++-..|+ +....|.+.+
T Consensus 15 rLEendk~i~~~L~~Ik~gq~~qe~v--------------~~kld~tlD~i~re-Re~dee~k~~n~Knir~~KmwilGl 79 (98)
T PF11166_consen 15 RLEENDKTIFNKLDEIKDGQHDQELV--------------NQKLDRTLDEINRE-REEDEENKKKNDKNIRDIKMWILGL 79 (98)
T ss_pred HHHHhhHHHHHHHHHHHHhHhhHHHH--------------HHHHHhhHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44444555666666666665554444 44444444442221 33445555555552 2245566555
Q ss_pred HHHHHHHHHHHHH
Q 039173 247 ILLCVILGIASYL 259 (265)
Q Consensus 247 ~llivil~l~~~~ 259 (265)
+--++-.+|++++
T Consensus 80 vgTi~gsliia~l 92 (98)
T PF11166_consen 80 VGTIFGSLIIALL 92 (98)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
No 30
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=89.50 E-value=4.4 Score=28.65 Aligned_cols=20 Identities=10% Similarity=0.038 Sum_probs=10.1
Q ss_pred HHHHhhHHHHHHHHHHHHHH
Q 039173 215 VDKATSDLKNNNVRLKETLL 234 (265)
Q Consensus 215 vd~~~~~l~~~~~~l~~~~~ 234 (265)
.......|..-....+++..
T Consensus 36 i~~~~~~l~~I~~n~kW~~r 55 (71)
T PF10779_consen 36 IKNLNKQLEKIKSNTKWIWR 55 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555544
No 31
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=88.74 E-value=3.7 Score=31.32 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=36.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 039173 175 KQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKN 224 (265)
Q Consensus 175 eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~ 224 (265)
.|-++++.|.+.|..+.+.-.....|++.|++.|+-|...+..-+.+|..
T Consensus 50 ~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD~ 99 (102)
T PF01519_consen 50 AQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLDK 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667777777777777777777777777777777777777666666654
No 32
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.63 E-value=10 Score=34.20 Aligned_cols=78 Identities=18% Similarity=0.253 Sum_probs=51.7
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---HHHHHHccCCCchHHHHHHH
Q 039173 173 KMKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRL---KETLLKVRSSRNFCIDIILL 249 (265)
Q Consensus 173 ~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l---~~~~~~~~~~~~~ci~i~ll 249 (265)
++...-.+-+|+++...|.++...=++-+..=....|+.+-.++.+.+.|-+--.++ .+++-+ -|.++|++|
T Consensus 229 ~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwLmvk-----iF~i~ivFf 303 (311)
T KOG0812|consen 229 MQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWLMVK-----IFGILIVFF 303 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchHHHHH-----HHHHHHHHH
Confidence 356677777777777777777777777777777777888888888888777665555 334433 355455555
Q ss_pred HHHHHH
Q 039173 250 CVILGI 255 (265)
Q Consensus 250 ivil~l 255 (265)
+|++++
T Consensus 304 lvfvlf 309 (311)
T KOG0812|consen 304 LVFVLF 309 (311)
T ss_pred HHHHHh
Confidence 444443
No 33
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=86.94 E-value=8.9 Score=33.88 Aligned_cols=66 Identities=17% Similarity=0.228 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccC--CCchHHHHHHHHHH
Q 039173 187 LDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRS--SRNFCIDIILLCVI 252 (265)
Q Consensus 187 v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~--~~~~ci~i~llivi 252 (265)
...+-.+|..+-+-...=+..|.+=..-++++...+......++....+-+. ...|+|+.++++++
T Consensus 169 ~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~~~~~~~i~~ 236 (251)
T PF09753_consen 169 TEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWGCWTWLMIFV 236 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 3445566666666666667777777777888888888888777777666543 34455444444433
No 34
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=86.04 E-value=12 Score=27.74 Aligned_cols=79 Identities=11% Similarity=0.193 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHH---HHHHHHHHHHccCCCchHHHHHHHHHHHHHHHHH
Q 039173 186 GLDTLKNLALDMNEELDRQVPLIDEIDT---KVDKATSDLKNN---NVRLKETLLKVRSSRNFCIDIILLCVILGIASYL 259 (265)
Q Consensus 186 ~v~~lk~~a~~i~~El~~Q~~lLd~l~~---~vd~~~~~l~~~---~~~l~~~~~~~~~~~~~ci~i~llivil~l~~~~ 259 (265)
.-..|...-..|.+|++.=..-++.|++ .+..+++.+... ..+-++++++.....+.==+++.+.+++++++++
T Consensus 6 vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~v~ 85 (92)
T PF03908_consen 6 VTESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLVVL 85 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3455666666777777766665555554 334444444433 3333445555432322223445555566666666
Q ss_pred HHHhc
Q 039173 260 YQALK 264 (265)
Q Consensus 260 ~~~~k 264 (265)
|-+.|
T Consensus 86 yI~~r 90 (92)
T PF03908_consen 86 YILWR 90 (92)
T ss_pred HHhhh
Confidence 66544
No 35
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=85.03 E-value=9.6 Score=30.30 Aligned_cols=61 Identities=16% Similarity=0.247 Sum_probs=52.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 039173 174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLL 234 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~ 234 (265)
++.-+.|+.+...+..+.++...|.+|+.+=.+=++.+..+++.++..+...-.++..+-.
T Consensus 64 khLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 64 KHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE 124 (126)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5666888999999999999999999999999999999999999999998888888876643
No 36
>PRK00846 hypothetical protein; Provisional
Probab=83.13 E-value=15 Score=26.59 Aligned_cols=55 Identities=13% Similarity=0.058 Sum_probs=44.2
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 039173 172 RKMKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNN 226 (265)
Q Consensus 172 ~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~ 226 (265)
++...++.|+.|...+.-+-..-...++.|-.|...++.+...+.....+|+.+.
T Consensus 7 ~~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 7 RDQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456668888888888888888888888888999999888888888777776653
No 37
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=81.78 E-value=18 Score=26.42 Aligned_cols=42 Identities=17% Similarity=0.327 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 039173 180 LDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDL 222 (265)
Q Consensus 180 Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l 222 (265)
-+.+.+.+..+-+-+..+.+ ++.+.+-|.+-...+.+...+|
T Consensus 16 ~~im~~Ni~~ll~Rge~L~~-L~~kt~~L~~~a~~F~k~a~~l 57 (89)
T PF00957_consen 16 KNIMRENIDKLLERGEKLEE-LEDKTEELSDNAKQFKKNAKKL 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCchHHH-HHHHHHHHHHHhHHHHHHHHHH
Confidence 33344444444444444433 4444444444444444443333
No 38
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=81.47 E-value=36 Score=29.76 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHH----------------hhHHHHHHHHHHHHHHHccCC-CchHHHH
Q 039173 200 ELDRQVPLIDEIDTKVDKA----------------TSDLKNNNVRLKETLLKVRSS-RNFCIDI 246 (265)
Q Consensus 200 El~~Q~~lLd~l~~~vd~~----------------~~~l~~~~~~l~~~~~~~~~~-~~~ci~i 246 (265)
....|+..++-|.+..+.+ .+.+...-+.++...+++.+. ..+|-.+
T Consensus 91 ~~k~~~dF~~~Lq~~Lk~V~tde~k~~~~~ei~k~r~e~~~ml~evK~~~E~y~k~~k~~~~gi 154 (230)
T PF03904_consen 91 TEKVHNDFQDILQDELKDVDTDELKNIAQNEIKKVREENKSMLQEVKQSHEKYQKRQKSMYKGI 154 (230)
T ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4556666666555554443 223333344455555555544 4455444
No 39
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=80.35 E-value=33 Score=28.60 Aligned_cols=56 Identities=27% Similarity=0.393 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHH
Q 039173 196 DMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFCIDIILLCVILGIAS 257 (265)
Q Consensus 196 ~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~ci~i~llivil~l~~ 257 (265)
.+.+|...++.-+.+++.+++.--+.|+.....+|+=+ -+|++++++-++.+++++
T Consensus 117 ~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~~------lr~~~g~i~~~~a~~la~ 172 (177)
T PF07798_consen 117 RIREEQAKQELKIQELNNKIDTEIANLRTEIESLKWDT------LRWLVGVIFGCVALVLAI 172 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 44455555555566666665555555554444444322 347765555444444433
No 40
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=78.96 E-value=3.4 Score=30.46 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=11.0
Q ss_pred HHHHHHHHHHccCC-CchHH
Q 039173 226 NVRLKETLLKVRSS-RNFCI 244 (265)
Q Consensus 226 ~~~l~~~~~~~~~~-~~~ci 244 (265)
..++..++.++++- +.|.+
T Consensus 19 ~DQL~qlVsrN~sfirdFvL 38 (84)
T PF06143_consen 19 YDQLEQLVSRNRSFIRDFVL 38 (84)
T ss_pred HHHHHHHHHhChHHHHHHHH
Confidence 35677777776653 34443
No 41
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=78.50 E-value=2.3 Score=34.61 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=18.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHhcC
Q 039173 239 SRNFCIDIILLCVILGIASYLYQALKN 265 (265)
Q Consensus 239 ~~~~ci~i~llivil~l~~~~~~~~k~ 265 (265)
+.++.|+++++.+|++|++.+|..++|
T Consensus 116 ~~~~~i~~~i~g~ll~i~~giy~~~r~ 142 (145)
T PF10661_consen 116 PISPTILLSIGGILLAICGGIYVVLRK 142 (145)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666778888888888775
No 42
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.64 E-value=53 Score=28.95 Aligned_cols=77 Identities=12% Similarity=0.079 Sum_probs=50.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHH
Q 039173 176 QDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFCIDIILLCVILGI 255 (265)
Q Consensus 176 qD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~ci~i~llivil~l 255 (265)
..+.+-.+......+++--..=|.=++.+..-+|.++..++++..++..+++ ++ ...+.|.-..+++.+++++++|
T Consensus 157 ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~-~~---s~~~~~~~il~l~~~~~lvv~i 232 (235)
T KOG3202|consen 157 LSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR-MA---SQCSQWCAILLLVGLLLLVVII 232 (235)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh---ccccchhHHHHHHHHHHHHHHH
Confidence 3344444444444444444444555668888889999999999999998888 33 4566677776666555555554
Q ss_pred H
Q 039173 256 A 256 (265)
Q Consensus 256 ~ 256 (265)
+
T Consensus 233 ~ 233 (235)
T KOG3202|consen 233 F 233 (235)
T ss_pred h
Confidence 3
No 43
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=75.81 E-value=19 Score=37.39 Aligned_cols=21 Identities=10% Similarity=0.121 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039173 187 LDTLKNLALDMNEELDRQVPL 207 (265)
Q Consensus 187 v~~lk~~a~~i~~El~~Q~~l 207 (265)
+..++..-..++.++..+.+.
T Consensus 359 v~~ik~~l~~~~~~i~~~a~~ 379 (806)
T PF05478_consen 359 VPPIKRDLDSIGKQIRSQAKQ 379 (806)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 44
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=74.37 E-value=26 Score=24.79 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHH
Q 039173 200 ELDRQVPLIDEIDTKVDKATSDLK 223 (265)
Q Consensus 200 El~~Q~~lLd~l~~~vd~~~~~l~ 223 (265)
|..+=.+-||+++++|+.|++.+.
T Consensus 13 d~~~i~~rLd~iEeKVEf~~~E~~ 36 (70)
T TIGR01149 13 EFNEVMKRLDEIEEKVEFVNGEVA 36 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445667888888888777664
No 45
>PRK10884 SH3 domain-containing protein; Provisional
Probab=72.70 E-value=62 Score=27.88 Aligned_cols=38 Identities=11% Similarity=0.232 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 039173 192 NLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRL 229 (265)
Q Consensus 192 ~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l 229 (265)
+....+.++++.-+..+.+|+..-......+..+..++
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~ 155 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKV 155 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444443333
No 46
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=72.67 E-value=2.4 Score=32.31 Aligned_cols=20 Identities=25% Similarity=0.364 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 039173 244 IDIILLCVILGIASYLYQAL 263 (265)
Q Consensus 244 i~i~llivil~l~~~~~~~~ 263 (265)
+.++.|+++++|+.+||.||
T Consensus 66 i~lls~v~IlVily~IyYFV 85 (101)
T PF06024_consen 66 ISLLSFVCILVILYAIYYFV 85 (101)
T ss_pred HHHHHHHHHHHHHhhheEEE
Confidence 34455555555555555443
No 47
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=72.20 E-value=56 Score=28.57 Aligned_cols=32 Identities=13% Similarity=0.084 Sum_probs=18.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHccCCCchH
Q 039173 212 DTKVDKATSDLKNNNVRLKETLLKVRSSRNFC 243 (265)
Q Consensus 212 ~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~c 243 (265)
..-+..+...+..+-..++...++...-.+-|
T Consensus 182 nQvl~~~~k~~D~N~~~L~~~Serve~y~ksk 213 (244)
T KOG2678|consen 182 NQVLGAAEKGIDVNSQGLMDVSERVEKYDKSK 213 (244)
T ss_pred HHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhh
Confidence 44455555555665666666655555445556
No 48
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=69.90 E-value=18 Score=26.05 Aligned_cols=50 Identities=26% Similarity=0.394 Sum_probs=41.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 039173 174 MKQDQGLDVISEGLDTLKNLALD---MNEELDRQVPLIDEIDTKVDKATSDLK 223 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~---i~~El~~Q~~lLd~l~~~vd~~~~~l~ 223 (265)
+.-|+..+.|...|..++.--.. ++..++.|..-|+.++..|...++-|.
T Consensus 14 k~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL~ 66 (75)
T PF05531_consen 14 KAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDILN 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 67789999999999888887666 888888888888888888887776654
No 49
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=69.05 E-value=41 Score=24.39 Aligned_cols=87 Identities=16% Similarity=0.208 Sum_probs=52.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhhh---------h---hhhHHhhhhhHHHHHHHHHHHhhHHHHHHHHH-HhcCCCCH
Q 039173 34 DAFARFYATVESEIDKALLKAETASM---------E---TNRAAAVAMKAEVRRTKARLLEEVPKLQKLAR-KKVKGLSK 100 (265)
Q Consensus 34 Dpw~~~~~~~~~~l~~~l~~~~~~~~---------~---~~~~~~~~~~~eiR~~l~~l~~~l~~L~~~l~-kk~~~lt~ 100 (265)
+.|++...++...|..+-...+.... . ..+.....+..+|......+...|..|+.... ......+.
T Consensus 3 ~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~~~~~~~~ 82 (103)
T PF00804_consen 3 PEFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDSEGEEPSS 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT--S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc
Confidence 46999999988776655222221110 0 11112334455666666667666766666521 23457788
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 039173 101 EEQETRHDLVLGLSERIEAI 120 (265)
Q Consensus 101 ~El~~R~~~v~~l~~~~~~l 120 (265)
.+..-|+..+..|..++.++
T Consensus 83 ~~~ri~~nq~~~L~~kf~~~ 102 (103)
T PF00804_consen 83 NEVRIRKNQVQALSKKFQEV 102 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888754
No 50
>PHA02414 hypothetical protein
Probab=68.70 E-value=49 Score=25.05 Aligned_cols=79 Identities=10% Similarity=0.308 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHHHHH
Q 039173 182 VISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFCIDIILLCVILGIASYLYQ 261 (265)
Q Consensus 182 ~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~ci~i~llivil~l~~~~~~ 261 (265)
+|...|..|+.|...+.--+.-|.+--..|--.+.+...++. .+....++-....+=.+-=++++|+-.++-|+|+
T Consensus 33 eL~~av~ELRdivvslDKd~Av~sEKqshi~yQi~~Lee~i~----aL~~~n~ked~~KkD~vEkVfmivLGAvvtyVFs 108 (111)
T PHA02414 33 ELEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERLEEKIS----ALAESNKKEDTEKKDTVEKVFMIVLGAVVTYVFS 108 (111)
T ss_pred HHHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHHHHHHH----HHHhccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666655555555544444444433333222 2222223222222223333666666677778888
Q ss_pred Hhc
Q 039173 262 ALK 264 (265)
Q Consensus 262 ~~k 264 (265)
++|
T Consensus 109 ~fk 111 (111)
T PHA02414 109 KFK 111 (111)
T ss_pred hhC
Confidence 876
No 51
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.25 E-value=56 Score=25.57 Aligned_cols=49 Identities=18% Similarity=0.363 Sum_probs=26.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 039173 175 KQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKN 224 (265)
Q Consensus 175 eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~ 224 (265)
+-|+-.+-+...|.+.-+=+... +||++=.+-|..-.....++..+|++
T Consensus 37 QvdeVv~IMr~NV~KVlER~ekL-~~L~drad~L~~~as~F~~~A~klkr 85 (116)
T KOG0860|consen 37 QVDEVVDIMRENVEKVLERGEKL-DELDDRADQLQAGASQFEKTAVKLKR 85 (116)
T ss_pred HHHHHHHHHHHhHHHHHHhcchH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555554444443 23555555566656666666665544
No 52
>PRK02793 phi X174 lysis protein; Provisional
Probab=68.00 E-value=39 Score=23.96 Aligned_cols=49 Identities=12% Similarity=0.102 Sum_probs=28.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 039173 176 QDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKN 224 (265)
Q Consensus 176 qD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~ 224 (265)
.++.|..|...+.-+-..-..+++.|-.|...|+.+...+.....+|+.
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345555655555555555556666666666666666555555544443
No 53
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=67.62 E-value=37 Score=23.78 Aligned_cols=48 Identities=13% Similarity=0.207 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 039173 178 QGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNN 225 (265)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~ 225 (265)
+.|+.|...+.-+-..-..+++.|-.|...|+.+...+.....+|...
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455556666666666666666666777777777776666666666554
No 54
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=67.54 E-value=7 Score=28.60 Aligned_cols=22 Identities=32% Similarity=0.300 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 039173 242 FCIDIILLCVILGIASYLYQAL 263 (265)
Q Consensus 242 ~ci~i~llivil~l~~~~~~~~ 263 (265)
..+.|+.++|++++++++|+++
T Consensus 5 ~i~~iialiv~~iiaIvvW~iv 26 (81)
T PF00558_consen 5 EILAIIALIVALIIAIVVWTIV 26 (81)
T ss_dssp ---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777888764
No 55
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=67.38 E-value=54 Score=25.05 Aligned_cols=60 Identities=22% Similarity=0.215 Sum_probs=40.3
Q ss_pred hhhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 039173 175 KQDQGLDVISEGLDTL--KNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLL 234 (265)
Q Consensus 175 eqD~~Ld~l~~~v~~l--k~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~ 234 (265)
--++.|..+...+..+ .+.-....+.++.|++-+..+...++.....|......|..+.+
T Consensus 34 ~~~q~L~kiE~~~~~l~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~ink 95 (102)
T PF01519_consen 34 SNNQRLTKIENKLDQLAQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINK 95 (102)
T ss_dssp -HTTB-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777733 44444444778888888888888888777777776666666554
No 56
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=64.89 E-value=6.3 Score=33.44 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=21.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHhc
Q 039173 239 SRNFCIDIILLCVILGIASYLYQALK 264 (265)
Q Consensus 239 ~~~~ci~i~llivil~l~~~~~~~~k 264 (265)
..-|+-.|+|.+-++.|++|+|+|.|
T Consensus 160 ~~SFiGGIVL~LGv~aI~ff~~KF~k 185 (186)
T PF05283_consen 160 AASFIGGIVLTLGVLAIIFFLYKFCK 185 (186)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhhcc
Confidence 35577788888888899999999887
No 57
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=64.84 E-value=6.7 Score=21.79 Aligned_cols=16 Identities=13% Similarity=0.497 Sum_probs=8.5
Q ss_pred CchHHHHHHHHHHHHH
Q 039173 240 RNFCIDIILLCVILGI 255 (265)
Q Consensus 240 ~~~ci~i~llivil~l 255 (265)
+.|.++++||++++++
T Consensus 4 ~~FalivVLFILLiIv 19 (24)
T PF09680_consen 4 SGFALIVVLFILLIIV 19 (24)
T ss_pred ccchhHHHHHHHHHHh
Confidence 3466555555555444
No 58
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.44 E-value=21 Score=30.61 Aligned_cols=18 Identities=6% Similarity=0.270 Sum_probs=8.4
Q ss_pred hhhhHHHHH---HHHHHHHHH
Q 039173 176 QDQGLDVIS---EGLDTLKNL 193 (265)
Q Consensus 176 qD~~Ld~l~---~~v~~lk~~ 193 (265)
.+-.+|.|+ ..|..+|.+
T Consensus 120 ~~p~id~lskvkaqv~evk~v 140 (217)
T KOG0859|consen 120 EHPEISKLAKVKAQVTEVKGV 140 (217)
T ss_pred cCcchhHHHHHHHHHHHHHHH
Confidence 444455554 344444443
No 59
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=63.27 E-value=55 Score=23.68 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHH
Q 039173 200 ELDRQVPLIDEIDTKVDKATSDLK 223 (265)
Q Consensus 200 El~~Q~~lLd~l~~~vd~~~~~l~ 223 (265)
|..+=.+-||+++++|+.|++.+.
T Consensus 16 d~~~i~~rLD~iEeKVEftn~Ei~ 39 (77)
T PRK01026 16 DFKEIQKRLDEIEEKVEFTNAEIF 39 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445667888888888877664
No 60
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=62.97 E-value=13 Score=24.08 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q 039173 243 CIDIILLCVILGIASYLYQALKN 265 (265)
Q Consensus 243 ci~i~llivil~l~~~~~~~~k~ 265 (265)
.+-+.+++.++++++++|. +||
T Consensus 6 lip~sl~l~~~~l~~f~Wa-vk~ 27 (45)
T PF03597_consen 6 LIPVSLILGLIALAAFLWA-VKS 27 (45)
T ss_pred HHHHHHHHHHHHHHHHHHH-Hcc
Confidence 4455666666677777776 443
No 61
>PF15106 TMEM156: TMEM156 protein family
Probab=62.53 E-value=9.1 Score=33.01 Aligned_cols=19 Identities=32% Similarity=0.499 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 039173 245 DIILLCVILGIASYLYQAL 263 (265)
Q Consensus 245 ~i~llivil~l~~~~~~~~ 263 (265)
.++|+|+++.|+++||+++
T Consensus 180 vLVllVfiflii~iI~KIl 198 (226)
T PF15106_consen 180 VLVLLVFIFLIILIIYKIL 198 (226)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4466777777777899876
No 62
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=62.47 E-value=54 Score=24.20 Aligned_cols=32 Identities=13% Similarity=0.250 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039173 179 GLDVISEGLDTLKNLALDMNEELDRQVPLIDE 210 (265)
Q Consensus 179 ~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~ 210 (265)
..+++..-+...+.-+..-.+|...=|+-||.
T Consensus 39 kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN 70 (85)
T PRK09973 39 KIARLEQDMKALRPQIYAAKSEANRANTRLDA 70 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33444444444444444444444444444433
No 63
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=61.21 E-value=56 Score=23.14 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHH
Q 039173 201 LDRQVPLIDEIDTKVDKATSDLK 223 (265)
Q Consensus 201 l~~Q~~lLd~l~~~vd~~~~~l~ 223 (265)
..+=.+-||+++++++.+++.+.
T Consensus 14 ~~~i~~rLd~iEeKvEf~~~Ei~ 36 (70)
T PF04210_consen 14 FNEIMKRLDEIEEKVEFTNAEIA 36 (70)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Confidence 34445567777777777776654
No 64
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=60.40 E-value=30 Score=25.45 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=7.8
Q ss_pred hhhhhhHHHHHHHHHHH
Q 039173 174 MKQDQGLDVISEGLDTL 190 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~l 190 (265)
...+..||.|...+..|
T Consensus 29 ~~ins~LD~Lns~LD~L 45 (83)
T PF03670_consen 29 AAINSMLDQLNSCLDHL 45 (83)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555554444333
No 65
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=60.39 E-value=58 Score=23.07 Aligned_cols=25 Identities=20% Similarity=0.407 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHH
Q 039173 199 EELDRQVPLIDEIDTKVDKATSDLK 223 (265)
Q Consensus 199 ~El~~Q~~lLd~l~~~vd~~~~~l~ 223 (265)
+|.++-++-||+++++|+-|.+.+-
T Consensus 15 ~dfne~~kRLdeieekvef~~~Ev~ 39 (75)
T COG4064 15 DDFNEIHKRLDEIEEKVEFVNGEVY 39 (75)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3556667788889988888877664
No 66
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=59.92 E-value=8.6 Score=24.80 Aligned_cols=11 Identities=45% Similarity=0.935 Sum_probs=5.5
Q ss_pred chHHHHHHHHH
Q 039173 241 NFCIDIILLCV 251 (265)
Q Consensus 241 ~~ci~i~lliv 251 (265)
+||++++++++
T Consensus 34 nfcliliclll 44 (52)
T PF04272_consen 34 NFCLILICLLL 44 (52)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 46755544433
No 67
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=59.73 E-value=24 Score=21.71 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=15.1
Q ss_pred HHHHHHHHccCCCchHHHHHHHHHHHHHHHHHHHH
Q 039173 228 RLKETLLKVRSSRNFCIDIILLCVILGIASYLYQA 262 (265)
Q Consensus 228 ~l~~~~~~~~~~~~~ci~i~llivil~l~~~~~~~ 262 (265)
+..+.+..+. +.|. ...++.++++++++-|++
T Consensus 4 k~hkai~aYE--r~Wi-~F~l~mi~vFi~li~ytl 35 (38)
T PF09125_consen 4 KAHKAIEAYE--RGWI-AFALAMILVFIALIGYTL 35 (38)
T ss_dssp HHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HhHH-HHHHHHHHHHHHHHHHHH
Confidence 4455555543 2343 344444445555555554
No 68
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=59.36 E-value=9.9 Score=21.56 Aligned_cols=16 Identities=13% Similarity=0.459 Sum_probs=8.2
Q ss_pred CchHHHHHHHHHHHHH
Q 039173 240 RNFCIDIILLCVILGI 255 (265)
Q Consensus 240 ~~~ci~i~llivil~l 255 (265)
+.|.++++||++++++
T Consensus 6 ~gf~livVLFILLIIi 21 (26)
T TIGR01732 6 GGFALIVVLFILLVIV 21 (26)
T ss_pred cchHHHHHHHHHHHHh
Confidence 3455555555554444
No 69
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=58.92 E-value=78 Score=26.10 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 039173 178 QGLDVISEGLDTLKNLALDMNE 199 (265)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~i~~ 199 (265)
+..+.+..-.+++.++|..+.+
T Consensus 52 ~~~~~lr~Rydrlr~va~rvQ~ 73 (156)
T PF08372_consen 52 RPPDSLRMRYDRLRSVAGRVQN 73 (156)
T ss_pred cccHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666665543
No 70
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=58.83 E-value=54 Score=22.23 Aligned_cols=50 Identities=18% Similarity=0.311 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 039173 179 GLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLK 235 (265)
Q Consensus 179 ~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~ 235 (265)
.+|.|+.-|+.|+..-..+..++.. +..++..+...-.++|.||..+...
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~-------lr~~v~~ak~EAaRAN~RlDN~a~s 53 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNA-------LRADVQAAKEEAARANQRLDNIAQS 53 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhHhh
Confidence 4566666666666655555555443 3334445555555555555555444
No 71
>PF10151 DUF2359: Uncharacterised conserved protein (DUF2359); InterPro: IPR019308 This is a 450 amino acid region of a family of proteins conserved from insects to humans. The function is not known.
Probab=58.42 E-value=1.8e+02 Score=28.30 Aligned_cols=64 Identities=16% Similarity=0.130 Sum_probs=31.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHHHccCC
Q 039173 176 QDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKV----DKATSDLKNNNVRLKETLLKVRSS 239 (265)
Q Consensus 176 qD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~v----d~~~~~l~~~~~~l~~~~~~~~~~ 239 (265)
+.+-.--|...+...++....+..-+.+--.-+...++++ ......++.+.+--+.+++++++.
T Consensus 195 l~~S~llL~~l~~~W~~~s~KL~k~l~~Tl~sfr~~Nee~~~k~~~~~~~lk~~dk~Ck~il~K~~~~ 262 (469)
T PF10151_consen 195 LKQSVLLLKHLDDEWKESSKKLSKSLKETLKSFRLKNEELLKKGKAKDESLKECDKACKVILGKMSGS 262 (469)
T ss_pred HHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHhHHHHHhccccchHHHHHHHHHHHHHHHhhcCC
Confidence 3344444444444444444444433333333333333333 123345666777778888887653
No 72
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=58.31 E-value=17 Score=24.15 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 039173 243 CIDIILLCVILGIASYLYQALK 264 (265)
Q Consensus 243 ci~i~llivil~l~~~~~~~~k 264 (265)
.|-+.+++.++++++++|. +|
T Consensus 7 LIpiSl~l~~~~l~~f~Wa-vk 27 (51)
T TIGR00847 7 LIPISLLLGGVGLVAFLWS-LK 27 (51)
T ss_pred HHHHHHHHHHHHHHHHHHH-Hc
Confidence 3444666666666667776 44
No 73
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=58.06 E-value=14 Score=24.52 Aligned_cols=20 Identities=15% Similarity=0.130 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 039173 245 DIILLCVILGIASYLYQALK 264 (265)
Q Consensus 245 ~i~llivil~l~~~~~~~~k 264 (265)
++.+|+++.++++.++.+.|
T Consensus 6 iV~i~iv~~lLg~~I~~~~K 25 (50)
T PF12606_consen 6 IVSIFIVMGLLGLSICTTLK 25 (50)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34444444444445556655
No 74
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=57.25 E-value=10 Score=24.46 Aligned_cols=11 Identities=45% Similarity=0.935 Sum_probs=5.5
Q ss_pred chHHHHHHHHH
Q 039173 241 NFCIDIILLCV 251 (265)
Q Consensus 241 ~~ci~i~lliv 251 (265)
+||++++++++
T Consensus 34 nf~liliclll 44 (52)
T TIGR01294 34 NFCLILICLLL 44 (52)
T ss_pred HHHHHHHHHHH
Confidence 46755544433
No 75
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.08 E-value=74 Score=24.87 Aligned_cols=25 Identities=12% Similarity=-0.024 Sum_probs=14.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHh
Q 039173 239 SRNFCIDIILLCVILGIASYLYQAL 263 (265)
Q Consensus 239 ~~~~ci~i~llivil~l~~~~~~~~ 263 (265)
.+..-+.+.++++++|.++++|.++
T Consensus 93 ~sg~~l~~~m~~f~lV~~fi~~~~l 117 (118)
T KOG3385|consen 93 RSGISLLCWMAVFSLVAFFILWVWL 117 (118)
T ss_pred cCCcchHHHHHHHHHHHHHHhheee
Confidence 4555555566666666666666554
No 76
>PRK00736 hypothetical protein; Provisional
Probab=56.60 E-value=66 Score=22.52 Aligned_cols=46 Identities=13% Similarity=0.230 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 039173 179 GLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKN 224 (265)
Q Consensus 179 ~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~ 224 (265)
.|+.|...+.-+-..-..+++.|-.|...|+.+...+.....+|..
T Consensus 6 Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 6 RLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555666666667777777776666665555544
No 77
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=56.03 E-value=16 Score=24.87 Aligned_cols=22 Identities=23% Similarity=0.546 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q 039173 243 CIDIILLCVILGIASYLYQALKN 265 (265)
Q Consensus 243 ci~i~llivil~l~~~~~~~~k~ 265 (265)
.+-+.++++.+++.+++|. +||
T Consensus 7 Lipvsi~l~~v~l~~flWa-vks 28 (58)
T COG3197 7 LIPVSILLGAVGLGAFLWA-VKS 28 (58)
T ss_pred HHHHHHHHHHHHHHHHHHh-ccc
Confidence 4455666667777777776 554
No 78
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=55.39 E-value=2.6e+02 Score=28.98 Aligned_cols=8 Identities=38% Similarity=0.571 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 039173 209 DEIDTKVD 216 (265)
Q Consensus 209 d~l~~~vd 216 (265)
+.++.-++
T Consensus 302 ~~i~~l~~ 309 (914)
T PRK11466 302 SEVSQLVD 309 (914)
T ss_pred HHHHHHHH
Confidence 33333333
No 79
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=55.19 E-value=15 Score=27.13 Aligned_cols=13 Identities=15% Similarity=0.358 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 039173 222 LKNNNVRLKETLL 234 (265)
Q Consensus 222 l~~~~~~l~~~~~ 234 (265)
+.+...=++.++=
T Consensus 26 VsrN~sfirdFvL 38 (84)
T PF06143_consen 26 VSRNRSFIRDFVL 38 (84)
T ss_pred HHhChHHHHHHHH
Confidence 3333444455543
No 80
>PHA03386 P10 fibrous body protein; Provisional
Probab=55.16 E-value=66 Score=24.10 Aligned_cols=52 Identities=25% Similarity=0.269 Sum_probs=41.6
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 039173 168 EYEMRKMKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLK 223 (265)
Q Consensus 168 q~~~~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~ 223 (265)
++..-.+.-|..++.|...|..+..- .+-|+.|...|++++..|..-++-|.
T Consensus 9 ~Ir~dIkavd~KVdaLQ~qV~dv~~n----~~~LDa~~~qL~~l~tkV~~Iq~iLn 60 (94)
T PHA03386 9 QILDAVQEVDTKVDALQTQLNGLEED----SQPLDGLPAQLTELDTKVSDIQSILT 60 (94)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhc----chhhhhHHHHHHHHHHHHHHHHHhcC
Confidence 33333478889999999999998876 56699999999999999988777654
No 81
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.94 E-value=1.6e+02 Score=26.65 Aligned_cols=50 Identities=16% Similarity=0.072 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 039173 186 GLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLK 235 (265)
Q Consensus 186 ~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~ 235 (265)
.+...+..|..--.+|.+|.+.|+.++..+|.....++.+-+.+..+-.-
T Consensus 87 ~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~~~ 136 (273)
T KOG3065|consen 87 LAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELKGL 136 (273)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 34566777888889999999999999999999999999999988877544
No 82
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=53.83 E-value=76 Score=25.11 Aligned_cols=62 Identities=23% Similarity=0.224 Sum_probs=44.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 039173 174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLK 235 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~ 235 (265)
......|..|...|..|..+-..++...+....+=+.|+.-++.+..........|+.+-..
T Consensus 9 ~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~ 70 (151)
T cd00179 9 EEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEES 70 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556777777777777777778887776444667777777777777777777777766443
No 83
>PRK11637 AmiB activator; Provisional
Probab=52.75 E-value=2.1e+02 Score=27.17 Aligned_cols=61 Identities=15% Similarity=0.127 Sum_probs=40.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHc
Q 039173 176 QDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKV 236 (265)
Q Consensus 176 qD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~ 236 (265)
....|+.+...+..+...-..+..++...+.-|+.++..+......+......++..+..+
T Consensus 73 ~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~ 133 (428)
T PRK11637 73 LLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAA 133 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555565566666667777777777777777777777777777776666654
No 84
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.06 E-value=1.4e+02 Score=26.04 Aligned_cols=57 Identities=11% Similarity=0.175 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 039173 179 GLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLK 235 (265)
Q Consensus 179 ~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~ 235 (265)
.+..+...+..++.+...==+++-.=++.|+.+.....+....=+.-.+.++.+..+
T Consensus 135 n~~~~n~el~~v~~im~~niedvl~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~ 191 (216)
T KOG0862|consen 135 NLLKLNQELQDVQRIMVENLEDVLQRGEVLNALSSMASELSSESRKYPKTAKGINRK 191 (216)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhhhhhhcccHHHHhhHHHHHHHHHH
Confidence 445555555555555544445566677777777777666655555555555555555
No 85
>PRK04406 hypothetical protein; Provisional
Probab=50.55 E-value=91 Score=22.32 Aligned_cols=49 Identities=16% Similarity=0.278 Sum_probs=31.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 039173 176 QDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKN 224 (265)
Q Consensus 176 qD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~ 224 (265)
.++.|+.|...+.-+-..-...++.|-.|...|+.+...+.....+|..
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456666666666666666666777777777777776666655555543
No 86
>PRK04325 hypothetical protein; Provisional
Probab=49.77 E-value=92 Score=22.17 Aligned_cols=47 Identities=13% Similarity=0.220 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 039173 178 QGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKN 224 (265)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~ 224 (265)
+.|+.|..-+.-+-..-..+++.|-.|...|+.+...+.....+|+.
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666666666666777777777666665555555544
No 87
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=49.30 E-value=1.3e+02 Score=23.83 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 039173 198 NEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKET 232 (265)
Q Consensus 198 ~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~ 232 (265)
+..+++|.++...+.++|..+...+......+..+
T Consensus 74 d~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v 108 (126)
T PF07889_consen 74 DDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSV 108 (126)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34455555555555555555555555444444444
No 88
>PRK02119 hypothetical protein; Provisional
Probab=49.27 E-value=94 Score=22.09 Aligned_cols=50 Identities=18% Similarity=0.278 Sum_probs=31.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 039173 175 KQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKN 224 (265)
Q Consensus 175 eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~ 224 (265)
..++.|+.|...+.-+-..-..+++.|-.|...||.+...+.....+|+.
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456666666666666666666666777777777666666555555543
No 89
>PF11315 Med30: Mediator complex subunit 30; InterPro: IPR021019 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med30 is a metazoan-specific subunit of Mediator [], having no homologues in yeasts.
Probab=48.50 E-value=60 Score=26.62 Aligned_cols=19 Identities=21% Similarity=0.245 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHhhccC
Q 039173 2 TVIDILFRLDDICKKYDKY 20 (265)
Q Consensus 2 ~~~~~~~r~~~~~~~~~~~ 20 (265)
++.-+++|++-||.||..+
T Consensus 56 ~i~~LFkkLRlIYekCne~ 74 (150)
T PF11315_consen 56 TIKVLFKKLRLIYEKCNEN 74 (150)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4677899999999999774
No 90
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=48.32 E-value=35 Score=20.89 Aligned_cols=19 Identities=21% Similarity=0.452 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 039173 247 ILLCVILGIASYLYQALKN 265 (265)
Q Consensus 247 ~llivil~l~~~~~~~~k~ 265 (265)
+-.+|++++.++++.++.|
T Consensus 8 Vy~vV~ffv~LFifGflsn 26 (36)
T PF02532_consen 8 VYTVVIFFVSLFIFGFLSN 26 (36)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred ehhhHHHHHHHHhccccCC
Confidence 4455556666666666654
No 91
>PRK00295 hypothetical protein; Provisional
Probab=47.96 E-value=94 Score=21.73 Aligned_cols=46 Identities=9% Similarity=0.115 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 039173 179 GLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKN 224 (265)
Q Consensus 179 ~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~ 224 (265)
.|+.|...+.-+-..-...++.|-.|...|+.+...+.....+|..
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555556666666666666666666555555544
No 92
>PRK15396 murein lipoprotein; Provisional
Probab=47.54 E-value=1.1e+02 Score=22.25 Aligned_cols=29 Identities=10% Similarity=0.243 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039173 178 QGLDVISEGLDTLKNLALDMNEELDRQVP 206 (265)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~ 206 (265)
...+++..-+..++.-+....+|...=|+
T Consensus 39 ~kvdql~~dv~~~~~~~~~a~~eA~raN~ 67 (78)
T PRK15396 39 AKVDQLSNDVNAMRSDVQAAKDDAARANQ 67 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443333333333
No 93
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.04 E-value=2e+02 Score=25.83 Aligned_cols=56 Identities=9% Similarity=0.297 Sum_probs=31.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 039173 176 QDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKE 231 (265)
Q Consensus 176 qD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~ 231 (265)
.-.+|+.|-..|..+-.-...-..|++.-+.-|..+..+++.+..++..-+..+++
T Consensus 50 ~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~ 105 (265)
T COG3883 50 IQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKK 105 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555566666666666666666666666555544443
No 94
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.54 E-value=2e+02 Score=25.05 Aligned_cols=55 Identities=24% Similarity=0.220 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHHHH
Q 039173 201 LDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFCIDIILLCVILGIASYLY 260 (265)
Q Consensus 201 l~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~ci~i~llivil~l~~~~~ 260 (265)
+..-.++|-+.+..++++..-|..-.+|+-+--- -...|+++++++|++++++-|
T Consensus 165 L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~-----~~~aii~~l~~~il~ilY~kf 219 (220)
T KOG1666|consen 165 LERARERLRETDANLGKSRKILTTMTRRLIRNKF-----TLTAIIALLVLAILLILYSKF 219 (220)
T ss_pred HHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhc
Confidence 4455678888888999988888887777643211 134567777777777777644
No 95
>PRK04654 sec-independent translocase; Provisional
Probab=46.34 E-value=1.9e+02 Score=25.10 Aligned_cols=24 Identities=13% Similarity=0.076 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039173 181 DVISEGLDTLKNLALDMNEELDRQ 204 (265)
Q Consensus 181 d~l~~~v~~lk~~a~~i~~El~~Q 204 (265)
..++..+.+++..+..+.+|+.+.
T Consensus 30 RtlGk~irk~R~~~~~vk~El~~E 53 (214)
T PRK04654 30 RFAGLWVRRARMQWDSVKQELERE 53 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555544443
No 96
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=45.38 E-value=23 Score=32.35 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 039173 245 DIILLCVILGIASYLYQALK 264 (265)
Q Consensus 245 ~i~llivil~l~~~~~~~~k 264 (265)
.++.++||+.|+++||.+++
T Consensus 261 SiiaIliIVLIMvIIYLILR 280 (299)
T PF02009_consen 261 SIIAILIIVLIMVIIYLILR 280 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555556667777664
No 97
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=45.34 E-value=17 Score=27.02 Aligned_cols=6 Identities=33% Similarity=0.324 Sum_probs=2.8
Q ss_pred HHHHHc
Q 039173 231 ETLLKV 236 (265)
Q Consensus 231 ~~~~~~ 236 (265)
+++++.
T Consensus 3 ~i~kK~ 8 (96)
T PF13800_consen 3 KILKKA 8 (96)
T ss_pred hHHHHH
Confidence 445544
No 98
>PRK11637 AmiB activator; Provisional
Probab=44.95 E-value=2.8e+02 Score=26.33 Aligned_cols=60 Identities=7% Similarity=0.104 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcc
Q 039173 178 QGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVR 237 (265)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~ 237 (265)
..+..+...+..+..--.....++.....-|+.++.+++.+...+.....++...-+...
T Consensus 68 ~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 68 QQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555566667777777777777777777777777777766655443
No 99
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=44.87 E-value=15 Score=35.81 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH
Q 039173 209 DEIDTKVDKATSDLKNNNVRLKETLL 234 (265)
Q Consensus 209 d~l~~~vd~~~~~l~~~~~~l~~~~~ 234 (265)
..+...++++.+.|+..++-|..+..
T Consensus 441 ~~vn~sL~~A~~~L~~Sn~iL~~v~~ 466 (490)
T PF00523_consen 441 GQVNNSLNNAKDLLDKSNQILDSVNP 466 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34555566666666666666655443
No 100
>PRK14762 membrane protein; Provisional
Probab=44.31 E-value=40 Score=18.94 Aligned_cols=11 Identities=18% Similarity=0.664 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 039173 246 IILLCVILGIA 256 (265)
Q Consensus 246 i~llivil~l~ 256 (265)
+++++++++++
T Consensus 7 ~i~iifligll 17 (27)
T PRK14762 7 AVLIIFLIGLL 17 (27)
T ss_pred HHHHHHHHHHH
Confidence 33333344443
No 101
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=43.46 E-value=29 Score=25.29 Aligned_cols=14 Identities=36% Similarity=0.648 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 039173 247 ILLCVILGIASYLY 260 (265)
Q Consensus 247 ~llivil~l~~~~~ 260 (265)
+++++++++++++|
T Consensus 12 ~li~i~li~~~~~~ 25 (85)
T PF11337_consen 12 ILIVISLIIGIYYF 25 (85)
T ss_pred HHHHHHHHHHHHHh
Confidence 33333344444444
No 102
>PHA03395 p10 fibrous body protein; Provisional
Probab=42.94 E-value=1.3e+02 Score=22.32 Aligned_cols=50 Identities=26% Similarity=0.377 Sum_probs=39.4
Q ss_pred HhhhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 039173 173 KMKQDQGLDVISEGLDTLKNLA---LDMNEELDRQVPLIDEIDTKVDKATSDL 222 (265)
Q Consensus 173 ~~eqD~~Ld~l~~~v~~lk~~a---~~i~~El~~Q~~lLd~l~~~vd~~~~~l 222 (265)
.+.-|..++.|...|..++... ..|++.++.|..-|+.++..++.-++-|
T Consensus 13 Ikavd~KVdalQ~~V~~l~~nlpdv~~l~~kLdaq~~~Ltti~tkv~~I~diL 65 (87)
T PHA03395 13 IKAVSDKVDALQAAVDDVRANLPDVTEINEKLDAQSASLDTISSAVDNITDIL 65 (87)
T ss_pred HHHHhhHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHHHHHHHHHHHHHcc
Confidence 3678888999999999888665 3677888888888888888887765543
No 103
>PTZ00046 rifin; Provisional
Probab=42.68 E-value=1.1e+02 Score=28.69 Aligned_cols=19 Identities=32% Similarity=0.527 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 039173 246 IILLCVILGIASYLYQALK 264 (265)
Q Consensus 246 i~llivil~l~~~~~~~~k 264 (265)
|+.++||+.|+++||-+++
T Consensus 321 iiAIvVIVLIMvIIYLILR 339 (358)
T PTZ00046 321 IVAIVVIVLIMVIIYLILR 339 (358)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3555555555668887765
No 104
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=42.56 E-value=89 Score=23.06 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=17.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHcc
Q 039173 212 DTKVDKATSDLKNNNVRLKETLLKVR 237 (265)
Q Consensus 212 ~~~vd~~~~~l~~~~~~l~~~~~~~~ 237 (265)
++.+.....++..--++++.+-+.++
T Consensus 42 E~E~~~l~~~l~~~E~eL~~LrkENr 67 (85)
T PF15188_consen 42 EKELNELKEKLENNEKELKLLRKENR 67 (85)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhh
Confidence 35666666777777777777766653
No 105
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=41.71 E-value=3.2e+02 Score=26.07 Aligned_cols=50 Identities=12% Similarity=0.133 Sum_probs=39.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHH
Q 039173 177 DQGLDVISEGLDTLKNLALDMNEELDRQ-VPLIDEIDTKVDKATSDLKNNN 226 (265)
Q Consensus 177 D~~Ld~l~~~v~~lk~~a~~i~~El~~Q-~~lLd~l~~~vd~~~~~l~~~~ 226 (265)
++.++---.-+.+||+--..|.+.+++| .+-.-+|.+.|+..+.++.+.-
T Consensus 268 Nd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 268 NDLTELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4444444466888999888999999988 4788999999999999988766
No 106
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=40.86 E-value=1.8e+02 Score=22.90 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcccccc
Q 039173 99 SKEEQETRHDLVLGLSERIEAIPDGNT 125 (265)
Q Consensus 99 t~~El~~R~~~v~~l~~~~~~l~~~~~ 125 (265)
+..+...|+..+..|..++...-..+.
T Consensus 79 ~s~~~r~~~~q~~~L~~~f~~~m~~fq 105 (151)
T cd00179 79 GSSVDRIRKTQHSGLSKKFVEVMTEFN 105 (151)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888888888888777655544
No 107
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.29 E-value=1.9e+02 Score=25.28 Aligned_cols=22 Identities=5% Similarity=0.232 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHhcccc
Q 039173 102 EQETRHDLVLGLSERIEAIPDG 123 (265)
Q Consensus 102 El~~R~~~v~~l~~~~~~l~~~ 123 (265)
-+.|=++.+..+.++...++..
T Consensus 90 tL~RHrEILqdy~qef~rir~n 111 (231)
T KOG3208|consen 90 TLQRHREILQDYTQEFRRIRSN 111 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666677666666665544
No 108
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=39.79 E-value=4.6e+02 Score=27.31 Aligned_cols=29 Identities=17% Similarity=0.076 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 039173 207 LIDEIDTKVDKATSDLKNNNVRLKETLLK 235 (265)
Q Consensus 207 lLd~l~~~vd~~~~~l~~~~~~l~~~~~~ 235 (265)
+.+.++.-++................+..
T Consensus 300 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 328 (968)
T TIGR02956 300 LNTTVSQLVNAQNQRTEAAVSDLLMTLSV 328 (968)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444443
No 109
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=39.72 E-value=26 Score=32.34 Aligned_cols=19 Identities=16% Similarity=0.328 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 039173 246 IILLCVILGIASYLYQALK 264 (265)
Q Consensus 246 i~llivil~l~~~~~~~~k 264 (265)
++.++|++||+++||+++.
T Consensus 159 lf~ii~l~vla~ivY~~~~ 177 (318)
T PF06682_consen 159 LFWIIFLLVLAFIVYSLFL 177 (318)
T ss_pred hhhHHHHHHHHHHHHHHHh
Confidence 4444556666677777653
No 110
>PHA02909 hypothetical protein; Provisional
Probab=39.32 E-value=46 Score=22.58 Aligned_cols=7 Identities=43% Similarity=1.113 Sum_probs=4.4
Q ss_pred CchHHHH
Q 039173 240 RNFCIDI 246 (265)
Q Consensus 240 ~~~ci~i 246 (265)
+.||+.+
T Consensus 30 ntfcimv 36 (72)
T PHA02909 30 NTFCIMV 36 (72)
T ss_pred cchhHHH
Confidence 5688554
No 111
>PF08650 DASH_Dad4: DASH complex subunit Dad4; InterPro: IPR013959 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=39.07 E-value=1.1e+02 Score=21.87 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcc
Q 039173 202 DRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVR 237 (265)
Q Consensus 202 ~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~ 237 (265)
+.|+.+|..|-..|++.+.-+...+..+..+...+.
T Consensus 7 e~Q~~LLsRIi~NvekLNEsv~~lN~~l~eIn~~N~ 42 (72)
T PF08650_consen 7 EQQSNLLSRIIGNVEKLNESVAELNQELEEINRANK 42 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 457777777777777777777777777777776654
No 112
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=38.94 E-value=2.4e+02 Score=29.40 Aligned_cols=44 Identities=11% Similarity=0.197 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 039173 178 QGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLK 223 (265)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~ 223 (265)
..+..+...+..++..-..+.+.+..+ +...+.+-...+...++
T Consensus 357 ~~v~~ik~~l~~~~~~i~~~a~~i~~~--~~~~~s~~~~~~~~~~~ 400 (806)
T PF05478_consen 357 DVVPPIKRDLDSIGKQIRSQAKQIPNQ--IDSNISDILNNTERSSR 400 (806)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHhh
Confidence 333344444444444444444444444 33334444444433333
No 113
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=38.45 E-value=43 Score=24.58 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039173 245 DIILLCVILGIASYLYQ 261 (265)
Q Consensus 245 ~i~llivil~l~~~~~~ 261 (265)
.|++.+||+++++.+|.
T Consensus 29 tILivLVIIiLlImlfq 45 (85)
T PF10717_consen 29 TILIVLVIIILLIMLFQ 45 (85)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33333333444444443
No 114
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=38.26 E-value=1.7e+02 Score=21.83 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHhccccc
Q 039173 99 SKEEQETRHDLVLGLSERIEAIPDGN 124 (265)
Q Consensus 99 t~~El~~R~~~v~~l~~~~~~l~~~~ 124 (265)
+..+...|+.....|..++..+-..|
T Consensus 80 ~~~~~r~~~~q~~~L~~~f~~~m~~f 105 (117)
T smart00503 80 GSASDRTRKAQTEKLRKKFKEVMNEF 105 (117)
T ss_pred CCHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888888888877654443
No 115
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=38.12 E-value=10 Score=26.41 Aligned_cols=18 Identities=33% Similarity=0.347 Sum_probs=0.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 039173 246 IILLCVILGIASYLYQAL 263 (265)
Q Consensus 246 i~llivil~l~~~~~~~~ 263 (265)
+.+++++++|++++|.|=
T Consensus 20 vgll~ailLIlf~iyR~r 37 (64)
T PF01034_consen 20 VGLLFAILLILFLIYRMR 37 (64)
T ss_dssp -----------------S
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555566667777763
No 116
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=37.76 E-value=5.5e+02 Score=28.36 Aligned_cols=80 Identities=16% Similarity=0.260 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHhhccCchHhhhhccCCCCChHHHHHHHHHHHHH---HHHHHHhhhhhhhhhHHhhhhhHHHHHHHHH
Q 039173 3 VIDILFRLDDICKKYDKYDIEKQRDLNAHGDDAFARFYATVESEID---KALLKAETASMETNRAAAVAMKAEVRRTKAR 79 (265)
Q Consensus 3 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dpw~~~~~~~~~~l~---~~l~~~~~~~~~~~~~~~~~~~~eiR~~l~~ 79 (265)
|.++-.|+++++.++.. =+.++ ...+|...|.+++..|. .++..++-. ...-........++|+.|..
T Consensus 1173 l~~L~~rt~rl~~~A~~---l~~tG----v~gay~s~f~~me~kl~~ir~il~~~svs--~~~i~~l~~~~~~lr~~l~~ 1243 (1758)
T KOG0994|consen 1173 LQELALRTHRLINRAKE---LKQTG----VLGAYASRFLDMEEKLEEIRAILSAPSVS--AEDIAQLASATESLRRQLQA 1243 (1758)
T ss_pred HHHHHHHHHHHHHHHHH---hhhcc----CchhhHhHHHHHHHHHHHHHHHhcCCCcc--HHHHHHHHHHHHHHHHHHHH
Confidence 56777888888877611 13333 23478888888885554 444332211 11111123445677877777
Q ss_pred HHhhHHHHHHHH
Q 039173 80 LLEEVPKLQKLA 91 (265)
Q Consensus 80 l~~~l~~L~~~l 91 (265)
+.+.|..+|..|
T Consensus 1244 ~~e~L~~~E~~L 1255 (1758)
T KOG0994|consen 1244 LTEDLPQEEETL 1255 (1758)
T ss_pred HHhhhhhhhhhh
Confidence 777777776664
No 117
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=37.75 E-value=58 Score=21.83 Aligned_cols=30 Identities=20% Similarity=0.185 Sum_probs=13.6
Q ss_pred ccCCCchHHHH---HHHHHHHHHHHHHHHHhcC
Q 039173 236 VRSSRNFCIDI---ILLCVILGIASYLYQALKN 265 (265)
Q Consensus 236 ~~~~~~~ci~i---~llivil~l~~~~~~~~k~ 265 (265)
-|..+.|.+++ +-.++.+++.+.++.+.+|
T Consensus 17 ~R~NsF~fViik~vismimylilGi~L~yis~~ 49 (54)
T PF04835_consen 17 LRPNSFWFVIIKSVISMIMYLILGIALIYISSN 49 (54)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 34445555444 2333334444455555443
No 118
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.90 E-value=1.5e+02 Score=25.58 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039173 178 QGLDVISEGLDTLKNLALDMNEELDR 203 (265)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~i~~El~~ 203 (265)
++|+-+.--+.+|-++...|++|+..
T Consensus 134 eklep~E~elrrLed~~~sI~~e~~Y 159 (210)
T KOG1691|consen 134 EKLEPLEVELRRLEDLVESIHEEMYY 159 (210)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888899999999999998865
No 119
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=35.91 E-value=1.5e+02 Score=20.70 Aligned_cols=48 Identities=13% Similarity=0.200 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcccc
Q 039173 72 EVRRTKARLLEEVPKLQKLARKKVKGLSKEEQETRHDLVLGLSERIEAIPDG 123 (265)
Q Consensus 72 eiR~~l~~l~~~l~~L~~~l~kk~~~lt~~El~~R~~~v~~l~~~~~~l~~~ 123 (265)
++...|.++++.|..++-- ...++..+-..-..-|..++.++..++..
T Consensus 29 ~~e~~l~ea~~~l~qMe~E----~~~~p~s~r~~~~~kl~~yr~~l~~lk~~ 76 (79)
T PF05008_consen 29 EIERDLDEAEELLKQMELE----VRSLPPSERNQYKSKLRSYRSELKKLKKE 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HCTS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444332 23567777777777888888888777654
No 120
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=35.59 E-value=2.7e+02 Score=26.12 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 039173 246 IILLCVILGIASYLYQALK 264 (265)
Q Consensus 246 i~llivil~l~~~~~~~~k 264 (265)
++.++||+.|+++||-+++
T Consensus 316 iIAIvvIVLIMvIIYLILR 334 (353)
T TIGR01477 316 IIAILIIVLIMVIIYLILR 334 (353)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3555555556668887764
No 121
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=35.42 E-value=3.3e+02 Score=25.51 Aligned_cols=18 Identities=11% Similarity=0.143 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 039173 103 QETRHDLVLGLSERIEAI 120 (265)
Q Consensus 103 l~~R~~~v~~l~~~~~~l 120 (265)
+-+-+..+..|+.++.+|
T Consensus 330 lv~IKqAl~kLk~EI~qM 347 (359)
T PF10498_consen 330 LVKIKQALTKLKQEIKQM 347 (359)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 445555555565555554
No 122
>PF09771 Tmemb_18A: Transmembrane protein 188; InterPro: IPR019168 The function of this family of transmembrane proteins has not, as yet, been determined.
Probab=35.42 E-value=1.4e+02 Score=23.62 Aligned_cols=44 Identities=20% Similarity=0.374 Sum_probs=33.3
Q ss_pred HhhHHHHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHHHHHHH
Q 039173 218 ATSDLKNNNVRLKETLLKVRS-SRNFCIDIILLCVILGIASYLYQ 261 (265)
Q Consensus 218 ~~~~l~~~~~~l~~~~~~~~~-~~~~ci~i~llivil~l~~~~~~ 261 (265)
+-..|+.=.+||..++...+. +..|=++++++.++.++.++.|-
T Consensus 5 ~ceDLkaFErRLtEvI~~l~Pst~RWRiiL~v~svct~v~A~~wL 49 (125)
T PF09771_consen 5 ACEDLKAFERRLTEVINSLQPSTTRWRIILVVVSVCTAVGAWHWL 49 (125)
T ss_pred hHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHh
Confidence 456788888999999998876 46777677777777777777663
No 123
>COG4640 Predicted membrane protein [Function unknown]
Probab=35.39 E-value=54 Score=31.13 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHcc
Q 039173 221 DLKNNNVRLKETLLKVR 237 (265)
Q Consensus 221 ~l~~~~~~l~~~~~~~~ 237 (265)
+=..+++-+..++.+.|
T Consensus 28 ~~sqan~~tn~i~~trr 44 (465)
T COG4640 28 RQSQANKSTNEIIQTRR 44 (465)
T ss_pred hhhhhhHHHHHHHHhhc
Confidence 33445556666666554
No 124
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=35.38 E-value=67 Score=20.91 Aligned_cols=8 Identities=13% Similarity=0.488 Sum_probs=3.6
Q ss_pred HHHHHHhc
Q 039173 257 SYLYQALK 264 (265)
Q Consensus 257 ~~~~~~~k 264 (265)
+++|.++|
T Consensus 26 ~F~~F~~K 33 (54)
T PF06716_consen 26 VFIWFVYK 33 (54)
T ss_pred HHHHHHHH
Confidence 34454444
No 125
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=35.16 E-value=2.7e+02 Score=23.29 Aligned_cols=62 Identities=13% Similarity=0.254 Sum_probs=53.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcc
Q 039173 176 QDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVR 237 (265)
Q Consensus 176 qD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~ 237 (265)
..+..+.+..++..|...+..+..+++.....|..+...+..-...++.....+..++....
T Consensus 101 d~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~ 162 (184)
T PF05791_consen 101 DQKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGEN 162 (184)
T ss_dssp HHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccc
Confidence 34667888889999999999999999999999999999999999999999999888887643
No 126
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=34.66 E-value=54 Score=24.81 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=12.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHH
Q 039173 239 SRNFCIDIILLCVILGIASYLYQA 262 (265)
Q Consensus 239 ~~~~ci~i~llivil~l~~~~~~~ 262 (265)
+++|.|++.++++++++.+++..+
T Consensus 49 WRN~GIli~f~i~f~~~~~~~~e~ 72 (103)
T PF06422_consen 49 WRNFGILIAFWIFFIVLTLLATEF 72 (103)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 466775555555555554444433
No 127
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=34.38 E-value=1.9e+02 Score=21.33 Aligned_cols=57 Identities=14% Similarity=0.200 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 039173 178 QGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLL 234 (265)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~ 234 (265)
..-+.+..-|+++..-=..+.+|++....-+..++..-..+..+|..++..++.++.
T Consensus 32 ~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~vL~ 88 (89)
T PF13747_consen 32 RKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRAVLD 88 (89)
T ss_pred hhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333666666666666666677777777777777777777777777777777776654
No 128
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=33.84 E-value=54 Score=22.47 Aligned_cols=14 Identities=50% Similarity=0.558 Sum_probs=6.2
Q ss_pred HHHHHHccCC-CchH
Q 039173 230 KETLLKVRSS-RNFC 243 (265)
Q Consensus 230 ~~~~~~~~~~-~~~c 243 (265)
..++.+.+.. +.+.
T Consensus 30 ~eil~ker~R~r~~~ 44 (64)
T COG4068 30 GEILNKERKRQRNFM 44 (64)
T ss_pred HHHHHHHHHHHHHHH
Confidence 3445554433 3444
No 129
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=33.69 E-value=1.8e+02 Score=20.88 Aligned_cols=23 Identities=9% Similarity=0.166 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHH
Q 039173 206 PLIDEIDTKVDKATSDLKNNNVR 228 (265)
Q Consensus 206 ~lLd~l~~~vd~~~~~l~~~~~~ 228 (265)
+.|++|+...-..+=++....+.
T Consensus 9 r~L~eiEr~L~~~DP~fa~~l~~ 31 (82)
T PF11239_consen 9 RRLEEIERQLRADDPRFAARLRS 31 (82)
T ss_pred HHHHHHHHHHHhcCcHHHHHhcc
Confidence 58999999888887777766555
No 130
>PLN03160 uncharacterized protein; Provisional
Probab=33.62 E-value=26 Score=30.34 Aligned_cols=8 Identities=25% Similarity=0.231 Sum_probs=3.4
Q ss_pred CCchHHHH
Q 039173 239 SRNFCIDI 246 (265)
Q Consensus 239 ~~~~ci~i 246 (265)
+.+||..+
T Consensus 36 ~~~c~~~~ 43 (219)
T PLN03160 36 CIKCCGCI 43 (219)
T ss_pred ceEEHHHH
Confidence 44444333
No 131
>PF11688 DUF3285: Protein of unknown function (DUF3285); InterPro: IPR021702 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=33.41 E-value=99 Score=19.81 Aligned_cols=31 Identities=23% Similarity=0.215 Sum_probs=15.6
Q ss_pred HHHHHHHccCC-CchHHHHHHHHHHHHHHHHH
Q 039173 229 LKETLLKVRSS-RNFCIDIILLCVILGIASYL 259 (265)
Q Consensus 229 l~~~~~~~~~~-~~~ci~i~llivil~l~~~~ 259 (265)
|+...+|.+.+ .-|++..+-++.+++.++|+
T Consensus 12 MRNMVRKg~~SL~HF~LT~~gll~~lv~la~l 43 (45)
T PF11688_consen 12 MRNMVRKGGTSLFHFGLTAVGLLGFLVGLAYL 43 (45)
T ss_pred HHHHHHccCcchhHHHHHHHHHHHHHHHHHHh
Confidence 44556665444 34455445555555555554
No 132
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=32.45 E-value=3e+02 Score=22.96 Aligned_cols=107 Identities=14% Similarity=0.195 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHHhhccCchHhhhhccCCCCCh-HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhhhHHHHHHHHHH
Q 039173 2 TVIDILFRLDDICKKYDKYDIEKQRDLNAHGDDA-FARFYATVESEIDKALLKAETASMETNRAAAVAMKAEVRRTKARL 80 (265)
Q Consensus 2 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dp-w~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~eiR~~l~~l 80 (265)
|+.|=++|..-++.-++..+...... ...|| |+-..=+....|..+ .. ..+...-..+..+++..+..+
T Consensus 61 tLkdPl~RA~YLL~L~~g~~~~~e~~---~~~d~~fLme~ME~rE~lee~----~~---~~d~~~L~~l~~~v~~~~~~~ 130 (173)
T PRK01773 61 ILKDPILRAEAIIALNTGEQQNLEEK---STQDMAFLMQQMEWREQLEEI----EQ---QQDEDALTAFSKEIKQEQQAI 130 (173)
T ss_pred HHCChHHHHHHHHHhccCCCCCcccc---cCCCHHHHHHHHHHHHHHHhh----cc---cCCHHHHHHHHHHHHHHHHHH
Confidence 57788899999999996666432222 33466 665522222333221 11 011111223334555555544
Q ss_pred HhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhccc
Q 039173 81 LEEVPKLQKLARKKVKGLSKEEQETRHDLVLGLSERIEAIPD 122 (265)
Q Consensus 81 ~~~l~~L~~~l~kk~~~lt~~El~~R~~~v~~l~~~~~~l~~ 122 (265)
...+. ..+.... --+....-+|-.++..+..++.....
T Consensus 131 ~~~l~---~~~~~~d-~~~A~~~~~rL~y~~kl~~ei~~~~~ 168 (173)
T PRK01773 131 LTELS---TALNSQQ-WQQASQINDRLRFIKKLIIEIERVEE 168 (173)
T ss_pred HHHHH---HHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433 2211110 11345567888888888888877654
No 133
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=32.16 E-value=2.9e+02 Score=22.82 Aligned_cols=68 Identities=18% Similarity=0.233 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHHHHHHhc
Q 039173 193 LALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFCIDIILLCVILGIASYLYQALK 264 (265)
Q Consensus 193 ~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~ci~i~llivil~l~~~~~~~~k 264 (265)
+-.+|+.|=..-.+....++..+..++.++...-..++.-++. .+|=++=.++.+++++++++..+++
T Consensus 107 ~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~----~K~~~lr~~~g~i~~~~a~~la~~r 174 (177)
T PF07798_consen 107 VKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIES----LKWDTLRWLVGVIFGCVALVLAILR 174 (177)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777888888999999999999999888888888886 4576555777777777777776654
No 134
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=32.09 E-value=2.1e+02 Score=21.22 Aligned_cols=61 Identities=18% Similarity=0.209 Sum_probs=39.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 039173 174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLL 234 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~ 234 (265)
.+....|..|...|..|..+-..++...+.-..+=+.|+..++.+....+..+..|+.+-+
T Consensus 11 ~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~ 71 (117)
T smart00503 11 EEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEK 71 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677777777777777777777665532344456666666666666666666665544
No 135
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.95 E-value=1.9e+02 Score=20.63 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 039173 178 QGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLK 223 (265)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~ 223 (265)
+.|..|.-.+.-+-..=..++.-|.+|...++.+..+++....++.
T Consensus 8 ~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~ 53 (72)
T COG2900 8 ARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLK 53 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444433333333444445555555555555444444443
No 136
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=31.78 E-value=15 Score=29.31 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039173 176 QDQGLDVISEGLDTLKNLALDMNEELDRQV 205 (265)
Q Consensus 176 qD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~ 205 (265)
-...|+.....|..|...+-.+-+.+..-.
T Consensus 50 ~~~~l~~a~~~v~~L~~~~~~L~~kl~~l~ 79 (138)
T PF06009_consen 50 ANKALDDANNSVKNLEQLAPDLLDKLKPLE 79 (138)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555554444444443333
No 137
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=31.72 E-value=1.1e+02 Score=17.80 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 039173 83 EVPKLQKLARKKVKGLSKEEQETRHDLV 110 (265)
Q Consensus 83 ~l~~L~~~l~kk~~~lt~~El~~R~~~v 110 (265)
.|..|.+. ....-||++|.++++..+
T Consensus 4 ~L~~L~~l--~~~G~IseeEy~~~k~~l 29 (31)
T PF09851_consen 4 RLEKLKEL--YDKGEISEEEYEQKKARL 29 (31)
T ss_pred HHHHHHHH--HHcCCCCHHHHHHHHHHH
Confidence 34555553 345689999999888765
No 138
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=31.49 E-value=2.1e+02 Score=20.92 Aligned_cols=56 Identities=18% Similarity=0.173 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 039173 179 GLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLK 235 (265)
Q Consensus 179 ~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~ 235 (265)
.|-.|...|..+..+...||.- .+-.++-+.|..-+..+....+.....++.+...
T Consensus 4 ~l~~in~~v~~l~k~~~~lGt~-~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~ 59 (102)
T PF14523_consen 4 NLFKINQNVSQLEKLVNQLGTP-RDSQELREKIHQLIQKTNQLIKEISELLKKLNSL 59 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHH-SS-S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHhCCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666666666666654 3444555666666666666666666665555443
No 139
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=31.45 E-value=3.2e+02 Score=23.09 Aligned_cols=50 Identities=18% Similarity=0.191 Sum_probs=37.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 039173 174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLK 223 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~ 223 (265)
...++.++++...++.+-+.+-+.+.+|.-=..-|..+++++|+.-.-|.
T Consensus 89 D~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE 138 (189)
T TIGR02132 89 DLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLE 138 (189)
T ss_pred HHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567777777777777777778888887777778888888887766665
No 140
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=30.85 E-value=2.8e+02 Score=27.60 Aligned_cols=58 Identities=16% Similarity=0.267 Sum_probs=42.8
Q ss_pred hhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHH
Q 039173 177 DQGLDVISEGLDTLKNLAL-DMNEELDRQVPLIDEIDT--KVDKATSDLKNNNVRLKETLL 234 (265)
Q Consensus 177 D~~Ld~l~~~v~~lk~~a~-~i~~El~~Q~~lLd~l~~--~vd~~~~~l~~~~~~l~~~~~ 234 (265)
|.++++|+.-+.++...-. .+.+-...|.|||.-|+. ..|-.++.|++.-.|+++-++
T Consensus 395 ~~ef~~ve~Ri~~l~~~v~d~~~d~wsynaELlVlleN~~tld~~Ds~~~~L~ekvk~qL~ 455 (550)
T PF00509_consen 395 DKEFNEVEKRIDNLEKKVDDKIADVWSYNAELLVLLENQRTLDLHDSNVNNLYEKVKRQLR 455 (550)
T ss_dssp SCSSSTTGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHhhhccchhhhcccHHHHHHhccccchhhhHHHHHHHHHHHHHHHh
Confidence 4555556665555544333 344567889999998875 588999999999999999998
No 141
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=30.50 E-value=75 Score=20.48 Aligned_cols=16 Identities=31% Similarity=0.557 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHHHHH
Q 039173 242 FCIDIILLCVILGIAS 257 (265)
Q Consensus 242 ~ci~i~llivil~l~~ 257 (265)
|.-.|+-++++|++++
T Consensus 4 wlt~iFsvvIil~If~ 19 (49)
T PF11044_consen 4 WLTTIFSVVIILGIFA 19 (49)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444455555544
No 142
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=30.46 E-value=62 Score=20.88 Aligned_cols=15 Identities=20% Similarity=0.742 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 039173 246 IILLCVILGIASYLY 260 (265)
Q Consensus 246 i~llivil~l~~~~~ 260 (265)
+++++++++++++.|
T Consensus 16 v~~~~~F~gi~~w~~ 30 (49)
T PF05545_consen 16 VLFFVFFIGIVIWAY 30 (49)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 143
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=30.15 E-value=20 Score=35.64 Aligned_cols=18 Identities=17% Similarity=0.215 Sum_probs=1.4
Q ss_pred hhhhhhHHHHHHHHHHHH
Q 039173 174 MKQDQGLDVISEGLDTLK 191 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk 191 (265)
++.++-+..+...+-.+.
T Consensus 484 kel~e~~~n~n~t~P~l~ 501 (610)
T PF01601_consen 484 KELDEIFKNLNSTLPNLD 501 (610)
T ss_dssp ---------S------HH
T ss_pred HHHHHHHHhcCCCCCCCC
Confidence 344444444444444444
No 144
>PHA03164 hypothetical protein; Provisional
Probab=29.95 E-value=82 Score=22.76 Aligned_cols=16 Identities=31% Similarity=0.347 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 039173 247 ILLCVILGIASYLYQA 262 (265)
Q Consensus 247 ~llivil~l~~~~~~~ 262 (265)
+.+.+||++++++|.+
T Consensus 66 LaIamILfiifvlyvF 81 (88)
T PHA03164 66 LAIAMILFIIFVLYVF 81 (88)
T ss_pred HHHHHHHHHHHHHHhe
Confidence 3344455555555543
No 145
>PHA02849 putative transmembrane protein; Provisional
Probab=29.67 E-value=86 Score=22.75 Aligned_cols=20 Identities=20% Similarity=0.203 Sum_probs=8.5
Q ss_pred CchHHHHHHHHHHHHHHHHH
Q 039173 240 RNFCIDIILLCVILGIASYL 259 (265)
Q Consensus 240 ~~~ci~i~llivil~l~~~~ 259 (265)
+...++.+++++|.++++.+
T Consensus 15 g~v~vi~v~v~vI~i~~flL 34 (82)
T PHA02849 15 GAVTVILVFVLVISFLAFML 34 (82)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 43444444444444444433
No 146
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=29.59 E-value=1.3e+02 Score=30.04 Aligned_cols=42 Identities=7% Similarity=0.065 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHHHHHHh
Q 039173 220 SDLKNNNVRLKETLLKVRSSRNFCIDIILLCVILGIASYLYQAL 263 (265)
Q Consensus 220 ~~l~~~~~~l~~~~~~~~~~~~~ci~i~llivil~l~~~~~~~~ 263 (265)
.++++...++-+++++- .+|-|..-=++|+++|+++.++..+
T Consensus 72 ~r~Rr~q~~vYN~LERP--rGWkaf~YH~~VFllVl~CLILsV~ 113 (654)
T KOG1419|consen 72 ARYRRIQNKVYNFLERP--RGWKAFLYHFFVFLLVLSCLILSVL 113 (654)
T ss_pred HHHHHHHHHHHHHHhCC--CcchHHHHHHHHHHHHHHHHHHHHh
Confidence 78888899999999983 2332543444555555555554443
No 147
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=29.20 E-value=2.2e+02 Score=20.56 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 039173 209 DEIDTKVDKATSDLKNNNVRLKETLLK 235 (265)
Q Consensus 209 d~l~~~vd~~~~~l~~~~~~l~~~~~~ 235 (265)
.++.+..|....++..++..+-.-..+
T Consensus 18 ~~i~~rLD~iEeKVEftn~Ei~Qr~Gk 44 (77)
T PRK01026 18 KEIQKRLDEIEEKVEFTNAEIFQRIGK 44 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 455666777788888888777544443
No 148
>PF11137 DUF2909: Protein of unknown function (DUF2909); InterPro: IPR021313 This is a family of proteins conserved in Proteobacteria of unknown function.
Probab=29.06 E-value=95 Score=21.55 Aligned_cols=20 Identities=30% Similarity=0.557 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 039173 246 IILLCVILGIASYLYQALKN 265 (265)
Q Consensus 246 i~llivil~l~~~~~~~~k~ 265 (265)
++++.++.-+..-+|.|+|+
T Consensus 7 ~lll~ii~sL~saL~~l~kd 26 (63)
T PF11137_consen 7 LLLLAIIASLFSALFFLVKD 26 (63)
T ss_pred HHHHHHHHHHHHHHHHHhhC
Confidence 34444444444467777764
No 149
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=28.94 E-value=68 Score=24.48 Aligned_cols=10 Identities=20% Similarity=0.228 Sum_probs=6.1
Q ss_pred HHHHHHHHHc
Q 039173 227 VRLKETLLKV 236 (265)
Q Consensus 227 ~~l~~~~~~~ 236 (265)
.++++.+++.
T Consensus 2 ~~~~k~~~~~ 11 (107)
T COG4537 2 KKMKKFLKHK 11 (107)
T ss_pred hhHHHHHHhc
Confidence 4566666664
No 150
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=28.83 E-value=1.4e+02 Score=29.50 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhhHHHHHHH
Q 039173 71 AEVRRTKARLLEEVPKLQKL 90 (265)
Q Consensus 71 ~eiR~~l~~l~~~l~~L~~~ 90 (265)
.+.+..+..|...|+-|...
T Consensus 251 ~e~~e~~~kl~~~l~~l~~~ 270 (538)
T PF05781_consen 251 NESREIIQKLQKSLDVLHQC 270 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555444
No 151
>PF06260 DUF1024: Protein of unknown function (DUF1024); InterPro: IPR009368 This entry is represented by Bacteriophage 92, Orf64. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical proteins from Staphylococcus aureus, which are related to Orf64 from Staphylococcus phage 92 (Bacteriophage 92). The function of this family is unknown.
Probab=28.66 E-value=33 Score=24.93 Aligned_cols=18 Identities=28% Similarity=0.530 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhhccCch
Q 039173 5 DILFRLDDICKKYDKYDI 22 (265)
Q Consensus 5 ~~~~r~~~~~~~~~~~~~ 22 (265)
-||+-++.||||+.+||.
T Consensus 24 ~llkEiedVYKKAqaFDe 41 (82)
T PF06260_consen 24 GLLKEIEDVYKKAQAFDE 41 (82)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 478999999999976665
No 152
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=28.36 E-value=41 Score=30.50 Aligned_cols=25 Identities=20% Similarity=0.139 Sum_probs=11.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhc
Q 039173 240 RNFCIDIILLCVILGIASYLYQALK 264 (265)
Q Consensus 240 ~~~ci~i~llivil~l~~~~~~~~k 264 (265)
.++.=+|+++-++++|+++.|.++|
T Consensus 275 ~~l~piil~IG~vl~i~~Ig~~ifK 299 (305)
T PF04639_consen 275 DSLLPIILIIGGVLLIVFIGYFIFK 299 (305)
T ss_pred hhhhHHHHHHHHHHHHHHhhheeeE
Confidence 3344344444444445555555554
No 153
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=28.32 E-value=2.4e+02 Score=20.72 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccC
Q 039173 180 LDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRS 238 (265)
Q Consensus 180 Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~ 238 (265)
++.-..-|.+++.-+.+-. .|..|.++|++...=+-.+..+|..+...|..++.....
T Consensus 23 ~~~q~~rle~~k~~~~de~-~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~~~~ 80 (90)
T PF02970_consen 23 VEEQEARLEKMKAEGEDEY-DIKKQEEVLEETKMMIPDCQQRLEKAVEDLEEFLEEEEG 80 (90)
T ss_dssp HHHHHHHHHHHHHCTTSHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCcHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHCcC
Confidence 3333444555555555444 599999999999999999999999999999999887543
No 154
>PHA02855 anti-apoptotic membrane protein; Provisional
Probab=28.30 E-value=3.5e+02 Score=22.57 Aligned_cols=26 Identities=35% Similarity=0.504 Sum_probs=19.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhcC
Q 039173 240 RNFCIDIILLCVILGIASYLYQALKN 265 (265)
Q Consensus 240 ~~~ci~i~llivil~l~~~~~~~~k~ 265 (265)
+.+...+..+++++++++.+|.++|+
T Consensus 149 ~~il~sv~~~f~i~~~i~~~yY~~K~ 174 (180)
T PHA02855 149 NDILFSVINFFVIVGIIILLYYLLKI 174 (180)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778888888888888888774
No 155
>PHA02955 hypothetical protein; Provisional
Probab=28.07 E-value=74 Score=27.56 Aligned_cols=18 Identities=39% Similarity=0.635 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039173 245 DIILLCVILGIASYLYQA 262 (265)
Q Consensus 245 ~i~llivil~l~~~~~~~ 262 (265)
.+++++++++++.+++.-
T Consensus 185 ~~v~ii~~~v~l~yikR~ 202 (213)
T PHA02955 185 YIVLCLLILIILGYIYRT 202 (213)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333344444455443
No 156
>PF13131 DUF3951: Protein of unknown function (DUF3951)
Probab=27.58 E-value=92 Score=20.69 Aligned_cols=7 Identities=14% Similarity=0.330 Sum_probs=3.9
Q ss_pred HHHHHhc
Q 039173 258 YLYQALK 264 (265)
Q Consensus 258 ~~~~~~k 264 (265)
+-|+|+-
T Consensus 22 ity~mfV 28 (53)
T PF13131_consen 22 ITYKMFV 28 (53)
T ss_pred HHHHhhe
Confidence 4466654
No 157
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=27.41 E-value=59 Score=18.81 Aligned_cols=15 Identities=33% Similarity=0.817 Sum_probs=9.2
Q ss_pred CCCCChHHHHHHHHH
Q 039173 30 AHGDDAFARFYATVE 44 (265)
Q Consensus 30 ~~~~Dpw~~~~~~~~ 44 (265)
++++|||...|+.++
T Consensus 3 is~~d~f~eFY~rlk 17 (28)
T PF12108_consen 3 ISGGDPFSEFYERLK 17 (28)
T ss_dssp --S--HHHHHHHHHH
T ss_pred CCCCChHHHHHHHHH
Confidence 357899999987766
No 158
>PRK02793 phi X174 lysis protein; Provisional
Probab=27.39 E-value=2.3e+02 Score=20.02 Aligned_cols=21 Identities=5% Similarity=-0.018 Sum_probs=11.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHH
Q 039173 174 MKQDQGLDVISEGLDTLKNLA 194 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a 194 (265)
.-|+..++.|...|.++...-
T Consensus 18 afQe~tIe~Ln~~v~~Qq~~I 38 (72)
T PRK02793 18 AFQEITIEELNVTVTAHEMEM 38 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666655554433
No 159
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=27.32 E-value=4.1e+02 Score=23.01 Aligned_cols=62 Identities=10% Similarity=0.214 Sum_probs=49.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 039173 174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLK 235 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~ 235 (265)
...|..|+.|...+...+..+......+++-..-|..++.+.+++..++..+-.++..+=..
T Consensus 88 ~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~e 149 (237)
T PF00261_consen 88 QSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEE 149 (237)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHH
Confidence 45678888888888888888888888888888888888888888888888877777766544
No 160
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=27.10 E-value=1.4e+02 Score=21.90 Aligned_cols=26 Identities=12% Similarity=0.287 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHccCCCchHHHHHHHH
Q 039173 225 NNVRLKETLLKVRSSRNFCIDIILLC 250 (265)
Q Consensus 225 ~~~~l~~~~~~~~~~~~~ci~i~lli 250 (265)
+..+++.....-.......+++++|+
T Consensus 11 ~~~~Lr~~c~~Lsp~~R~~vvl~ml~ 36 (85)
T PF13150_consen 11 ADDRLRRYCGRLSPKQRLRVVLVMLV 36 (85)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34445555555443333343333333
No 161
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=26.45 E-value=4.9e+02 Score=23.57 Aligned_cols=64 Identities=14% Similarity=0.219 Sum_probs=31.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCch
Q 039173 175 KQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNF 242 (265)
Q Consensus 175 eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~ 242 (265)
-.+++|+.+...|..+......=...|..+-.-|.+....+ ..|......|..+++..+..|.|
T Consensus 10 pl~e~l~~~~~~l~~~~~~~~~~~~~L~~~l~~l~~~~~~~----~~l~~~~~~L~~aL~~~k~rG~w 73 (304)
T PF02646_consen 10 PLKEQLEKFEKRLEESFEQRSEEFGSLKEQLKQLSEANGEI----QQLSQEASNLTSALKNSKTRGNW 73 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHhCCCchhhH
Confidence 44455555555555444433333333444443344433333 45555666666677744444555
No 162
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=26.35 E-value=6.1e+02 Score=24.66 Aligned_cols=15 Identities=7% Similarity=0.213 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 039173 104 ETRHDLVLGLSERIE 118 (265)
Q Consensus 104 ~~R~~~v~~l~~~~~ 118 (265)
..|...+......+.
T Consensus 84 ~~~~~~~~~~~~~~~ 98 (553)
T PRK15048 84 NAKVELLDSARKTLA 98 (553)
T ss_pred hhHHHHHHHHHHHHH
Confidence 334444444444444
No 163
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=26.35 E-value=27 Score=27.28 Aligned_cols=14 Identities=29% Similarity=0.377 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 039173 247 ILLCVILGIASYLY 260 (265)
Q Consensus 247 ~llivil~l~~~~~ 260 (265)
.-|||+|+++++||
T Consensus 67 atliillviffviy 80 (150)
T PF06084_consen 67 ATLIILLVIFFVIY 80 (150)
T ss_pred HHHHHHHHHhheeE
Confidence 33444455545554
No 164
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=26.04 E-value=98 Score=19.61 Aligned_cols=9 Identities=22% Similarity=0.434 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 039173 253 LGIASYLYQ 261 (265)
Q Consensus 253 l~l~~~~~~ 261 (265)
.++..++|.
T Consensus 23 ~iva~~iYR 31 (43)
T PF08114_consen 23 GIVALFIYR 31 (43)
T ss_pred HHHHHHHHH
Confidence 333335553
No 165
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=25.87 E-value=4.1e+02 Score=22.52 Aligned_cols=59 Identities=15% Similarity=0.268 Sum_probs=52.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 039173 174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKET 232 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~ 232 (265)
.-.-..|......+......+..-..|+.++..||+.-...|+.....|..+..-+.+.
T Consensus 112 ~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~t 170 (188)
T PF05335_consen 112 ETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKT 170 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888999999999999999999999999999999999999999888776654
No 166
>PHA02675 ORF104 fusion protein; Provisional
Probab=25.74 E-value=2.8e+02 Score=20.46 Aligned_cols=41 Identities=10% Similarity=0.174 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 039173 189 TLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRL 229 (265)
Q Consensus 189 ~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l 229 (265)
+|-.....|-+.-..-++.|+.|+.+.|.....|-..++|+
T Consensus 41 ~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~Ml~L~KKI 81 (90)
T PHA02675 41 SLLDSYKTITDCCRETGARLDRLERHLETLREALLKLNTKI 81 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33345555666666667777777777777766666666555
No 167
>PF07432 Hc1: Histone H1-like protein Hc1; InterPro: IPR010886 This family consists of several bacterial histone H1-like Hc1 proteins, which are found in Chlamydiae and Bacteroidetes species. Chlamydiae are prokaryotic obligate intracellular parasites that undergo a biphasic life cycle involving an infectious, extracellular form known as elementary bodies and an intracellular, replicating form termed reticulate bodies. The gene coding for Hc1 is expressed only during the late stages of the chlamydial life cycle concomitant with the reorganisation of chlamydial reticulate bodies into elementary bodies, suggesting that the Hc1 protein plays a role in the condensation of chlamydial chromatin during intracellular differentiation [].; GO: 0003677 DNA binding
Probab=25.30 E-value=3.1e+02 Score=21.52 Aligned_cols=48 Identities=10% Similarity=0.256 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcc
Q 039173 183 ISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVR 237 (265)
Q Consensus 183 l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~ 237 (265)
|.+.+..++++-..|..+++ .++.+---++.+.+.++-.|.++++..|
T Consensus 2 lKdt~~kmkeL~e~~~~D~~-------K~EKGNKAAGtRaRK~sleLeKLaKefR 49 (123)
T PF07432_consen 2 LKDTFKKMKELLESFEADAE-------KAEKGNKAAGTRARKASLELEKLAKEFR 49 (123)
T ss_pred hHHHHHHHHHHHHHHHHHHH-------HHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666653 4688888889999999999999988765
No 168
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=25.27 E-value=69 Score=24.19 Aligned_cols=23 Identities=30% Similarity=0.236 Sum_probs=13.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHH
Q 039173 240 RNFCIDIILLCVILGIASYLYQA 262 (265)
Q Consensus 240 ~~~ci~i~llivil~l~~~~~~~ 262 (265)
+.+-++++.++.++.+++++|.+
T Consensus 59 ~~~~iili~lls~v~IlVily~I 81 (101)
T PF06024_consen 59 NNGNIILISLLSFVCILVILYAI 81 (101)
T ss_pred ccccchHHHHHHHHHHHHHHhhh
Confidence 44444556666666666666653
No 169
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=25.20 E-value=3.4e+02 Score=21.32 Aligned_cols=84 Identities=14% Similarity=0.194 Sum_probs=41.3
Q ss_pred HHHHHHHHhhccCchHhhhhccCCCCChHHHHHHHHHHHHHHH---HHHHhhh--hhhhhhHHhhhhhHHHHHHHHHHHh
Q 039173 8 FRLDDICKKYDKYDIEKQRDLNAHGDDAFARFYATVESEIDKA---LLKAETA--SMETNRAAAVAMKAEVRRTKARLLE 82 (265)
Q Consensus 8 ~r~~~~~~~~~~~~~~~~~~~~~~~~Dpw~~~~~~~~~~l~~~---l~~~~~~--~~~~~~~~~~~~~~eiR~~l~~l~~ 82 (265)
+|+..+.|+|.++-......+.......+...+..+..++..+ +.+.... ...+....+.....+|...+..+..
T Consensus 16 r~l~~l~k~~~~~~~~~~~~~~~~~~e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~ 95 (139)
T PF05615_consen 16 RPLKRLLKRFLKWCNLSDSILSGQPSEESQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKK 95 (139)
T ss_pred hhHHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777776554333321111133444444443333322 1111100 0012223455666778888888888
Q ss_pred hHHHHHHHH
Q 039173 83 EVPKLQKLA 91 (265)
Q Consensus 83 ~l~~L~~~l 91 (265)
++..|...|
T Consensus 96 ~ie~lk~~L 104 (139)
T PF05615_consen 96 EIEELKEEL 104 (139)
T ss_pred HHHHHHHHH
Confidence 888877764
No 170
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=25.06 E-value=2.6e+02 Score=19.95 Aligned_cols=62 Identities=23% Similarity=0.280 Sum_probs=39.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 039173 174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLK 235 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~ 235 (265)
.+....|+.|...|..+..+-..+......-..+=.+++.-++.+.........+|+.+-..
T Consensus 10 ~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~ 71 (103)
T PF00804_consen 10 QEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKD 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667788888888888777776665555223455555555556666666666666665444
No 171
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=25.01 E-value=2.9e+02 Score=20.46 Aligned_cols=33 Identities=12% Similarity=0.227 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcc
Q 039173 205 VPLIDEIDTKVDKATSDLKNNNVRLKETLLKVR 237 (265)
Q Consensus 205 ~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~ 237 (265)
..||+.|+..-......|.....++..-+....
T Consensus 60 ~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~ 92 (127)
T smart00502 60 KQLLEDLEEQKENKLKVLEQQLESLTQKQEKLS 92 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788888777777777777777766666644
No 172
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=24.88 E-value=2.4e+02 Score=19.55 Aligned_cols=21 Identities=5% Similarity=0.120 Sum_probs=10.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHH
Q 039173 174 MKQDQGLDVISEGLDTLKNLA 194 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a 194 (265)
.-|+..++.|...|.++...-
T Consensus 14 a~qe~~ie~Ln~~v~~Qq~~I 34 (69)
T PF04102_consen 14 AFQEDTIEELNDVVTEQQRQI 34 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555554444433
No 173
>PF08320 PIG-X: PIG-X / PBN1; InterPro: IPR013233 Mammalian PIG-X and yeast PBN1 are essential components of glycosylphosphatidylinositol-mannosyltransferase I []. These enzymes are involved in the transfer of sugar molecules.; GO: 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane
Probab=24.79 E-value=63 Score=27.57 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=19.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhc
Q 039173 241 NFCIDIILLCVILGIASYLYQALK 264 (265)
Q Consensus 241 ~~ci~i~llivil~l~~~~~~~~k 264 (265)
.|..++.++++++++++++|+++|
T Consensus 183 ~~V~~~T~~~~~lg~~~i~~~l~~ 206 (207)
T PF08320_consen 183 DFVEIGTLLVVLLGFIWILWKLFK 206 (207)
T ss_pred CEEhHHHHHHHHHHHHHHHHHHhC
Confidence 344477899999999999999887
No 174
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=24.77 E-value=3.4e+02 Score=21.23 Aligned_cols=23 Identities=9% Similarity=0.111 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHhcccccc
Q 039173 103 QETRHDLVLGLSERIEAIPDGNT 125 (265)
Q Consensus 103 l~~R~~~v~~l~~~~~~l~~~~~ 125 (265)
+-.+...+.+|+.++.+++.++.
T Consensus 91 lGEK~E~veEL~~Dv~DlK~myr 113 (120)
T PF12325_consen 91 LGEKSEEVEELRADVQDLKEMYR 113 (120)
T ss_pred hcchHHHHHHHHHHHHHHHHHHH
Confidence 34455677788888888776653
No 175
>COG3630 OadG Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit [Energy production and conversion]
Probab=24.63 E-value=80 Score=23.25 Aligned_cols=16 Identities=0% Similarity=-0.064 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 039173 247 ILLCVILGIASYLYQA 262 (265)
Q Consensus 247 ~llivil~l~~~~~~~ 262 (265)
++|++++++++++|.|
T Consensus 20 ~VflfL~iLi~~~~~m 35 (84)
T COG3630 20 FVFLFLSILIYAMRGM 35 (84)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5556666666666665
No 176
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=24.62 E-value=43 Score=34.67 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHHHHHHHHccCCCchHHHHHHHHHHHHHHH-HHHHHhcC
Q 039173 227 VRLKETLLKVRSSRNFCIDIILLCVILGIAS-YLYQALKN 265 (265)
Q Consensus 227 ~~l~~~~~~~~~~~~~ci~i~llivil~l~~-~~~~~~k~ 265 (265)
++++.-.+++..+...|..|.|+++++++++ +++.|+.|
T Consensus 138 ~r~~~~~~~~~a~kR~~~~l~Llvl~i~~ligv~~~fvtn 177 (865)
T KOG4331|consen 138 GRIKSALKQDDACKRPCCELELLVLAIELLIGVFRAFVTN 177 (865)
T ss_pred CCCCchhccCcHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
No 177
>PRK04598 tatA twin arginine translocase protein A; Provisional
Probab=24.45 E-value=65 Score=23.58 Aligned_cols=13 Identities=31% Similarity=0.391 Sum_probs=5.2
Q ss_pred chHHHHHHHHHHH
Q 039173 241 NFCIDIILLCVIL 253 (265)
Q Consensus 241 ~~ci~i~llivil 253 (265)
.|-++|+++|++|
T Consensus 6 ~~elliIlvivll 18 (81)
T PRK04598 6 IWQLLIIAVIVVL 18 (81)
T ss_pred HHHHHHHHHHHHH
Confidence 3443444443333
No 178
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=24.08 E-value=77 Score=22.71 Aligned_cols=12 Identities=33% Similarity=0.523 Sum_probs=4.6
Q ss_pred hHHHHHHHHHHH
Q 039173 242 FCIDIILLCVIL 253 (265)
Q Consensus 242 ~ci~i~llivil 253 (265)
|-|+|+++|++|
T Consensus 7 ~elliIl~Ivll 18 (73)
T PRK02958 7 WHWLIVLVIVVL 18 (73)
T ss_pred HHHHHHHHHHHH
Confidence 433344433333
No 179
>CHL00024 psbI photosystem II protein I
Probab=23.99 E-value=34 Score=20.95 Aligned_cols=17 Identities=24% Similarity=0.444 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHhcC
Q 039173 249 LCVILGIASYLYQALKN 265 (265)
Q Consensus 249 livil~l~~~~~~~~k~ 265 (265)
.+|++++.++++.++.|
T Consensus 10 ~vV~ffvsLFifGFlsn 26 (36)
T CHL00024 10 TVVIFFVSLFIFGFLSN 26 (36)
T ss_pred hHHHHHHHHHHccccCC
Confidence 34455555566665544
No 180
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=23.72 E-value=1.2e+02 Score=23.97 Aligned_cols=34 Identities=15% Similarity=-0.005 Sum_probs=16.9
Q ss_pred HHHHHHHHHccCCCchHHHHHHHHHHHHHHHHHH
Q 039173 227 VRLKETLLKVRSSRNFCIDIILLCVILGIASYLY 260 (265)
Q Consensus 227 ~~l~~~~~~~~~~~~~ci~i~llivil~l~~~~~ 260 (265)
..+-++.+.-..+.|=|.+++|.+++++|.+++.
T Consensus 21 EemlW~fR~ED~tpWNysiL~Ls~vvlvi~~~LL 54 (125)
T PF15048_consen 21 EEMLWFFRVEDATPWNYSILALSFVVLVISFFLL 54 (125)
T ss_pred HHHHHheecCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 3455666665444333444455444555544443
No 181
>PF00737 PsbH: Photosystem II 10 kDa phosphoprotein; InterPro: IPR001056 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight phosphoprotein PsbH found in PSII. The phosphorylation site of PsbH is located in the N terminus, where reversible phosphorylation is light-dependent and redox-controlled. PsbH is necessary for the photoprotection of PSII, being required for: (1) the rapid degradation of photodamaged D1 core protein to prevent further oxidative damage to the PSII core, and (2) the insertion of newly synthesised D1 protein into the thylakoid membrane []. PsbH may also regulate the transfer of electrons from D2 (Qa) to D1 (Qb) in the reaction core.; GO: 0042301 phosphate ion binding, 0015979 photosynthesis, 0050821 protein stabilization, 0009523 photosystem II, 0016020 membrane; PDB: 3PRR_H 2AXT_h 3BZ2_H 3BZ1_H 4FBY_W 3PRQ_H 3KZI_H 1S5L_h 3A0H_H 3ARC_H ....
Probab=23.67 E-value=1.2e+02 Score=20.24 Aligned_cols=17 Identities=29% Similarity=0.342 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039173 245 DIILLCVILGIASYLYQ 261 (265)
Q Consensus 245 ~i~llivil~l~~~~~~ 261 (265)
.+++|.++++++.-+|+
T Consensus 31 ~m~lf~vfl~iiL~IyN 47 (52)
T PF00737_consen 31 FMALFAVFLLIILEIYN 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 44555555555555553
No 182
>PRK00720 tatA twin arginine translocase protein A; Provisional
Probab=23.61 E-value=78 Score=23.00 Aligned_cols=13 Identities=31% Similarity=0.314 Sum_probs=5.1
Q ss_pred hHHHHHHHHHHHH
Q 039173 242 FCIDIILLCVILG 254 (265)
Q Consensus 242 ~ci~i~llivil~ 254 (265)
|-++|+++|++|+
T Consensus 7 ~ellIIlvIvlll 19 (78)
T PRK00720 7 WHWLIVLAVVLLL 19 (78)
T ss_pred HHHHHHHHHHHHH
Confidence 4333444433333
No 183
>PF05633 DUF793: Protein of unknown function (DUF793); InterPro: IPR008511 This entry includes Protein BYPASS 1 which is required for normal root and shoot development. Prevents constitutive production of a root mobile carotenoid-derived signaling compound that is capable of arresting shoot and leaf development [, ].
Probab=23.12 E-value=5.2e+02 Score=24.60 Aligned_cols=82 Identities=18% Similarity=0.232 Sum_probs=51.2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhhhHHHHHHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 039173 32 GDDAFARFYATVESEIDKALLKAETASMETNRAAAVAMKAEVRRTKARLLEEVPKLQKLARKKVKGLSKEEQETRHDLVL 111 (265)
Q Consensus 32 ~~Dpw~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~eiR~~l~~l~~~l~~L~~~l~kk~~~lt~~El~~R~~~v~ 111 (265)
..-+|-.-+..+++.|.+-+.+++.... .-+-+.+..++.-+..|.+.+....+.++.++.+.=+..|.
T Consensus 283 ~~~~WA~s~~~LQ~rI~eEikkk~~kgs-----------~gLLkEl~~ve~~vr~L~el~d~~~~p~~~e~~~ev~~~V~ 351 (389)
T PF05633_consen 283 RQFSWAPSFISLQERINEEIKKKERKGS-----------CGLLKELQQVEASVRELHELIDSFQFPLEEEKEEEVREAVE 351 (389)
T ss_pred cccccchHHHHHHHHHHHHHhhccccCc-----------chHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHH
Confidence 4456888888889888877666553211 12223445555555555555333345677776666677888
Q ss_pred HHHHHHHhccccc
Q 039173 112 GLSERIEAIPDGN 124 (265)
Q Consensus 112 ~l~~~~~~l~~~~ 124 (265)
+|..-++.|++++
T Consensus 352 EL~~~~~~L~~GL 364 (389)
T PF05633_consen 352 ELARVCEALSQGL 364 (389)
T ss_pred HHHHHHHHHHccc
Confidence 8888887776654
No 184
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=23.02 E-value=8.5e+02 Score=25.16 Aligned_cols=51 Identities=18% Similarity=0.161 Sum_probs=22.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 039173 175 KQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNN 225 (265)
Q Consensus 175 eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~ 225 (265)
.++..=++|...+..|+.+...--.|+.+=.+-++.|.+..++...++..+
T Consensus 555 ~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a 605 (717)
T PF10168_consen 555 KQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEA 605 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555544444444433333444444444444444433
No 185
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=22.97 E-value=1e+02 Score=22.67 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=11.6
Q ss_pred HHHHccCCCchHHHHHHHHHHHHHHH
Q 039173 232 TLLKVRSSRNFCIDIILLCVILGIAS 257 (265)
Q Consensus 232 ~~~~~~~~~~~ci~i~llivil~l~~ 257 (265)
+..+....+...+.+++++++++++.
T Consensus 16 i~~k~~~~s~li~~~LilfviF~~~L 41 (83)
T PF05814_consen 16 IFDKNEGFSELIITLLILFVIFFCVL 41 (83)
T ss_pred HHccccchHHHHHHHHHHHHHHHHHH
Confidence 34454333444444444444444444
No 186
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=22.85 E-value=1.2e+02 Score=21.82 Aligned_cols=22 Identities=9% Similarity=0.036 Sum_probs=11.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHH
Q 039173 241 NFCIDIILLCVILGIASYLYQA 262 (265)
Q Consensus 241 ~~ci~i~llivil~l~~~~~~~ 262 (265)
-|+..++|++++.++++=.+.+
T Consensus 30 ~faFV~~L~~fL~~liVRCfrI 51 (81)
T PF11057_consen 30 AFAFVGLLCLFLGLLIVRCFRI 51 (81)
T ss_pred eehHHHHHHHHHHHHHHHHHHH
Confidence 3554455555555555544444
No 187
>PRK09738 small toxic polypeptide; Provisional
Probab=22.55 E-value=94 Score=20.77 Aligned_cols=16 Identities=19% Similarity=0.428 Sum_probs=8.2
Q ss_pred CchHHHHHHHHHHHHH
Q 039173 240 RNFCIDIILLCVILGI 255 (265)
Q Consensus 240 ~~~ci~i~llivil~l 255 (265)
--||++++++.++++.
T Consensus 8 ~~~~livvCiTvL~f~ 23 (52)
T PRK09738 8 LVWCVLIVCLTLLIFT 23 (52)
T ss_pred ehhhHHHHHHHHHHHH
Confidence 3456555555544444
No 188
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=22.25 E-value=4e+02 Score=25.33 Aligned_cols=12 Identities=8% Similarity=-0.213 Sum_probs=5.2
Q ss_pred HHHHHHHHHHhc
Q 039173 253 LGIASYLYQALK 264 (265)
Q Consensus 253 l~l~~~~~~~~k 264 (265)
++.++.++.++|
T Consensus 198 ~icl~~l~glar 209 (406)
T PF04906_consen 198 VICLLGLLGLAR 209 (406)
T ss_pred HHHHHHHHHHHh
Confidence 333334445444
No 189
>PRK03554 tatA twin arginine translocase protein A; Provisional
Probab=22.10 E-value=76 Score=23.61 Aligned_cols=15 Identities=27% Similarity=0.264 Sum_probs=6.5
Q ss_pred chHHHHHHHHHHHHH
Q 039173 241 NFCIDIILLCVILGI 255 (265)
Q Consensus 241 ~~ci~i~llivil~l 255 (265)
.|-|+|+++|++|++
T Consensus 6 ~~eLlIIlvIvLLlF 20 (89)
T PRK03554 6 IWQLLIIAVIVVLLF 20 (89)
T ss_pred HHHHHHHHHHHHHHh
Confidence 343444444444443
No 190
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=22.06 E-value=1.1e+02 Score=25.00 Aligned_cols=13 Identities=31% Similarity=0.240 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHhc
Q 039173 252 ILGIASYLYQALK 264 (265)
Q Consensus 252 il~l~~~~~~~~k 264 (265)
|-|+++++|+++|
T Consensus 91 iGI~~f~lY~l~K 103 (152)
T PF15361_consen 91 IGIVLFILYTLFK 103 (152)
T ss_pred HHHHHHHHHHHHH
Confidence 3444445555554
No 191
>PRK00736 hypothetical protein; Provisional
Probab=22.00 E-value=2.8e+02 Score=19.27 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=11.8
Q ss_pred hhhhhhHHHHHHHHHHHHHH
Q 039173 174 MKQDQGLDVISEGLDTLKNL 193 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~ 193 (265)
.-|+..++.|...|.++...
T Consensus 15 afqe~tie~Ln~~v~~Qq~~ 34 (68)
T PRK00736 15 AEQEKTIEELSDQLAEQWKT 34 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666655443
No 192
>PRK09759 small toxic polypeptide; Provisional
Probab=21.89 E-value=1.1e+02 Score=20.29 Aligned_cols=15 Identities=7% Similarity=0.135 Sum_probs=7.4
Q ss_pred chHHHHHHHHHHHHH
Q 039173 241 NFCIDIILLCVILGI 255 (265)
Q Consensus 241 ~~ci~i~llivil~l 255 (265)
-||++++++.++++.
T Consensus 7 l~~liivCiTvL~f~ 21 (50)
T PRK09759 7 LLSLIVICFTLLFFT 21 (50)
T ss_pred HHHHHHHHHHHHHHH
Confidence 355555555444443
No 193
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=21.86 E-value=4.8e+02 Score=21.83 Aligned_cols=64 Identities=16% Similarity=0.207 Sum_probs=55.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcc
Q 039173 174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVR 237 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~ 237 (265)
.+....|..+...+..+..-......++.+.+..+..+.+.+...+-.+..+..++.++-..+.
T Consensus 112 ~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~ 175 (194)
T PF08614_consen 112 SEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENR 175 (194)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677889999999999999999999999999999999999999999999888888888766654
No 194
>PRK10884 SH3 domain-containing protein; Provisional
Probab=21.78 E-value=5.2e+02 Score=22.19 Aligned_cols=33 Identities=12% Similarity=0.221 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 039173 197 MNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKET 232 (265)
Q Consensus 197 i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~ 232 (265)
.-.+|+.+|.-| ......+..++..+..++...
T Consensus 133 ~~~~L~~~n~~L---~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 133 VINGLKEENQKL---KNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 334455555444 344444455544444444333
No 195
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=21.70 E-value=31 Score=27.81 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 039173 177 DQGLDVISEGLDTLKNLALDMNEEL 201 (265)
Q Consensus 177 D~~Ld~l~~~v~~lk~~a~~i~~El 201 (265)
.+.++.+...+.++......|..+.
T Consensus 111 ~~~~~~~~~~l~~l~~~l~~i~~~q 135 (183)
T PF01105_consen 111 KEHLDPLEESLEKLESNLKEIKDEQ 135 (183)
T ss_dssp -------------------------
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3455555555555544444444443
No 196
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=21.69 E-value=4.6e+02 Score=22.83 Aligned_cols=27 Identities=11% Similarity=0.094 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhccccc
Q 039173 98 LSKEEQETRHDLVLGLSERIEAIPDGN 124 (265)
Q Consensus 98 lt~~El~~R~~~v~~l~~~~~~l~~~~ 124 (265)
+...|...=+.-.+.++.+++.++..+
T Consensus 113 ~e~sEF~~lr~e~EklkndlEk~ks~l 139 (220)
T KOG3156|consen 113 IERSEFANLRAENEKLKNDLEKLKSSL 139 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666677777777766544
No 197
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=21.46 E-value=8.1e+02 Score=24.32 Aligned_cols=21 Identities=14% Similarity=0.172 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHhhccCchH
Q 039173 3 VIDILFRLDDICKKYDKYDIE 23 (265)
Q Consensus 3 ~~~~~~r~~~~~~~~~~~~~~ 23 (265)
+.+.|.++=.+++++...-|+
T Consensus 206 l~~~~e~IP~l~~~l~~~~P~ 226 (560)
T PF06160_consen 206 LEEIMEDIPKLYKELQKEFPD 226 (560)
T ss_pred HHHHHHHhHHHHHHHHHHhHH
Confidence 556777777777777666554
No 198
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=21.43 E-value=4.3e+02 Score=21.10 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhccc
Q 039173 71 AEVRRTKARLLEEVPKLQKLARKKVKGLSKEEQETRHDLVLGLSERIEAIPD 122 (265)
Q Consensus 71 ~eiR~~l~~l~~~l~~L~~~l~kk~~~lt~~El~~R~~~v~~l~~~~~~l~~ 122 (265)
.+.+..+...+..+.+|+.. +..+..-+..|+.++.++..
T Consensus 83 ~e~qsli~~yE~~~~kLe~e------------~~~Kdsei~~Lr~~L~~~~~ 122 (131)
T PF04859_consen 83 QEQQSLIKTYEIVVKKLEAE------------LRAKDSEIDRLREKLDELNR 122 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666554 56666667777777766543
No 199
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=21.38 E-value=7.9e+02 Score=26.12 Aligned_cols=76 Identities=22% Similarity=0.366 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHccCCC------------chHHHHH
Q 039173 182 VISEGLDTLKNLALDM-NEELDRQVPLIDE-IDTKVDKATSDLKNNNVRLKETLLKVRSSR------------NFCIDII 247 (265)
Q Consensus 182 ~l~~~v~~lk~~a~~i-~~El~~Q~~lLd~-l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~------------~~ci~i~ 247 (265)
.+..-++.+..++... ..|++.+.+.|++ ++..|-.+..-+..+..++..+..|.+.++ .+|..|+
T Consensus 718 ~l~~~lq~~~~~~eel~~~~~di~~e~l~~lld~ema~t~aAI~~A~~rie~~~~Kar~ss~~~~LeVne~iL~~ct~lm 797 (980)
T KOG0980|consen 718 LLRQYLQTLNQLGEELLPKELDIDQELLGNLLDIEMAETDAAIEDAVSRIEAIAAKARESSSGVRLEVNESILSACTALM 797 (980)
T ss_pred HHHHHHHHHHHHhHHhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCceeeccHHHHHHHHHHH
Confidence 4556666666666666 5666777777765 577889999999999999999999877532 2565555
Q ss_pred HHHHHHHHHH
Q 039173 248 LLCVILGIAS 257 (265)
Q Consensus 248 llivil~l~~ 257 (265)
=.|..||...
T Consensus 798 ~aI~~Lv~as 807 (980)
T KOG0980|consen 798 EAIMALVKAS 807 (980)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 200
>PF12459 DUF3687: D-Ala-teichoic acid biosynthesis protein; InterPro: IPR021008 Proteins in this family are bacterial proteins of approximately 50 amino acids in length. There are two completely conserved residues (L and Y) that may be functionally important. A number of entries are annotated as D-Ala-teichoic acid biosynthesis protein; however there is no direct evidence to support this annotation.
Probab=21.30 E-value=1e+02 Score=19.66 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=14.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHH
Q 039173 239 SRNFCIDIILLCVILGIASYLYQ 261 (265)
Q Consensus 239 ~~~~ci~i~llivil~l~~~~~~ 261 (265)
..+|+.--++-.+|+++++++|.
T Consensus 7 ~~~fi~~T~fYf~Ill~L~ylYg 29 (42)
T PF12459_consen 7 AVKFIGKTLFYFAILLALIYLYG 29 (42)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566555666666666677775
No 201
>PF06624 RAMP4: Ribosome associated membrane protein RAMP4; InterPro: IPR010580 This entry contains Serp1/Ramp4, which has been shown to interacts with target proteins during their translocation into the lumen of the endoplasmic reticulum. It has also been shown to protect unfolded target proteins against degradation during ER stress. It may facilitate glycosylation of target proteins after termination of ER stress and may modulate the use of N-glycosylation sites on target proteins [, ].
Probab=21.27 E-value=43 Score=23.26 Aligned_cols=24 Identities=4% Similarity=0.160 Sum_probs=16.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHh
Q 039173 240 RNFCIDIILLCVILGIASYLYQAL 263 (265)
Q Consensus 240 ~~~ci~i~llivil~l~~~~~~~~ 263 (265)
+.|++.+++|+|+-..++=++.++
T Consensus 38 gp~~L~l~iFVV~Gs~ifqiir~i 61 (63)
T PF06624_consen 38 GPWLLGLFIFVVCGSAIFQIIRSI 61 (63)
T ss_pred CHHHHhhhheeeEcHHHHHHHHHH
Confidence 667777777777777776555554
No 202
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=21.04 E-value=6.3e+02 Score=22.92 Aligned_cols=23 Identities=13% Similarity=0.252 Sum_probs=15.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHh
Q 039173 33 DDAFARFYATVESEIDKALLKAE 55 (265)
Q Consensus 33 ~Dpw~~~~~~~~~~l~~~l~~~~ 55 (265)
.|.|.++..-+.+.+..+...|.
T Consensus 45 ~~~~~q~~~~i~~k~~e~r~~r~ 67 (338)
T KOG3647|consen 45 EDQRDQYRSLIGDKIEELRKARE 67 (338)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 37799998877776666544444
No 203
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=20.95 E-value=2.8e+02 Score=21.96 Aligned_cols=49 Identities=18% Similarity=0.276 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhc
Q 039173 72 EVRRTKARLLEEVPKLQKLARKKVKGLSKEEQETRHDLVLGLSERIEAI 120 (265)
Q Consensus 72 eiR~~l~~l~~~l~~L~~~l~kk~~~lt~~El~~R~~~v~~l~~~~~~l 120 (265)
..+..+.....++..+...+......+++.+...|...+.....++...
T Consensus 47 ~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~ 95 (158)
T PF03938_consen 47 ALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555444322334677777777777666666666554
No 204
>PRK00295 hypothetical protein; Provisional
Probab=20.84 E-value=3e+02 Score=19.13 Aligned_cols=19 Identities=16% Similarity=0.200 Sum_probs=10.6
Q ss_pred hhhhhhHHHHHHHHHHHHH
Q 039173 174 MKQDQGLDVISEGLDTLKN 192 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~ 192 (265)
.-|+..++.|...|.++..
T Consensus 15 a~qE~tie~Ln~~v~~Qq~ 33 (68)
T PRK00295 15 AFQDDTIQALNDVLVEQQR 33 (68)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555566666655555543
No 205
>PF12420 DUF3671: Protein of unknown function ; InterPro: IPR022139 This domain family is found in eukaryotes, and is typically between 96 and 116 amino acids in length.
Probab=20.77 E-value=2.4e+02 Score=21.49 Aligned_cols=20 Identities=20% Similarity=0.418 Sum_probs=11.2
Q ss_pred HHHHhhHHHHHHHHHHHHHH
Q 039173 215 VDKATSDLKNNNVRLKETLL 234 (265)
Q Consensus 215 vd~~~~~l~~~~~~l~~~~~ 234 (265)
+|.-..+...-.+..+++.-
T Consensus 23 I~k~~~~~n~~kk~fkki~~ 42 (104)
T PF12420_consen 23 IDKLKKDPNIDKKKFKKIIF 42 (104)
T ss_pred HHHHhhCCChhHHHHHHHHH
Confidence 44444555556667766543
No 206
>PRK02119 hypothetical protein; Provisional
Probab=20.63 E-value=3.2e+02 Score=19.33 Aligned_cols=20 Identities=15% Similarity=0.121 Sum_probs=10.5
Q ss_pred hhhhhhHHHHHHHHHHHHHH
Q 039173 174 MKQDQGLDVISEGLDTLKNL 193 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~ 193 (265)
.-|+..++.|...|.++...
T Consensus 19 a~QE~tie~LN~~v~~Qq~~ 38 (73)
T PRK02119 19 AFQENLLEELNQALIEQQFV 38 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555433
No 207
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=20.63 E-value=2.6e+02 Score=21.23 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039173 193 LALDMNEELDRQVPLIDEIDTKVD 216 (265)
Q Consensus 193 ~a~~i~~El~~Q~~lLd~l~~~vd 216 (265)
+-..+.+|+..|.+-||+++..++
T Consensus 77 Lk~kl~~e~~~~~k~i~~le~~I~ 100 (100)
T PF04568_consen 77 LKEKLKEEIEHHRKEIDELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334566788889999999988765
No 208
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=20.53 E-value=2.9e+02 Score=18.90 Aligned_cols=22 Identities=23% Similarity=0.166 Sum_probs=12.3
Q ss_pred HhhHHHHHHHHHHHHHHHccCC
Q 039173 218 ATSDLKNNNVRLKETLLKVRSS 239 (265)
Q Consensus 218 ~~~~l~~~~~~l~~~~~~~~~~ 239 (265)
....++.--+.-.++++..+.+
T Consensus 6 ~~e~~~~f~~d~~rvl~~~~KP 27 (61)
T PRK09400 6 LQENVKNFLEDYKRVLKVARKP 27 (61)
T ss_pred HHHhHHHHHHHHHHHHHHhcCC
Confidence 3444455555666666666554
No 209
>PRK02655 psbI photosystem II reaction center I protein I; Provisional
Probab=20.51 E-value=43 Score=20.69 Aligned_cols=17 Identities=12% Similarity=0.378 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHhcC
Q 039173 249 LCVILGIASYLYQALKN 265 (265)
Q Consensus 249 livil~l~~~~~~~~k~ 265 (265)
.+|++++.++++.++.|
T Consensus 10 ~vV~ffvsLFiFGflsn 26 (38)
T PRK02655 10 IVVFFFVGLFVFGFLSS 26 (38)
T ss_pred hhHHHHHHHHHcccCCC
Confidence 34455555666666544
No 210
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.28 E-value=1.4e+02 Score=23.59 Aligned_cols=16 Identities=25% Similarity=0.262 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHhc
Q 039173 249 LCVILGIASYLYQALK 264 (265)
Q Consensus 249 livil~l~~~~~~~~k 264 (265)
+.+||+|++++...-|
T Consensus 78 Ig~Illi~y~irR~~K 93 (122)
T PF01102_consen 78 IGIILLISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3344455556555443
No 211
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.16 E-value=7.5e+02 Score=26.10 Aligned_cols=67 Identities=12% Similarity=0.163 Sum_probs=49.8
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 039173 166 RQEYEMRKMKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKET 232 (265)
Q Consensus 166 qQq~~~~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~ 232 (265)
+|.+.-...++|-++..+.+...++...-....+|+..++.....+.+.++-....|..++.+....
T Consensus 659 ~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~ 725 (970)
T KOG0946|consen 659 QQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDL 725 (970)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhH
Confidence 4455545589999999999999998888888888888888777777777777777776444443333
No 212
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=20.15 E-value=1.1e+02 Score=27.19 Aligned_cols=9 Identities=11% Similarity=0.261 Sum_probs=3.6
Q ss_pred HHHHHHHHh
Q 039173 255 IASYLYQAL 263 (265)
Q Consensus 255 l~~~~~~~~ 263 (265)
++.+++.++
T Consensus 215 ~~Y~i~g~~ 223 (268)
T PF09451_consen 215 AAYLIFGSW 223 (268)
T ss_pred HHHhhhhhh
Confidence 333444433
No 213
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=20.11 E-value=5.9e+02 Score=22.18 Aligned_cols=43 Identities=5% Similarity=0.185 Sum_probs=22.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039173 177 DQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKAT 219 (265)
Q Consensus 177 D~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~ 219 (265)
-..+..+..-+..+...-..+...++.|..-++.++..++...
T Consensus 55 ~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 55 LAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555555554443
No 214
>PRK15396 murein lipoprotein; Provisional
Probab=20.08 E-value=3.5e+02 Score=19.57 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=14.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHc
Q 039173 211 IDTKVDKATSDLKNNNVRLKETLLKV 236 (265)
Q Consensus 211 l~~~vd~~~~~l~~~~~~l~~~~~~~ 236 (265)
+..++..+...-.++|.||..+...+
T Consensus 51 ~~~~~~~a~~eA~raN~RlDn~~~sy 76 (78)
T PRK15396 51 MRSDVQAAKDDAARANQRLDNQATKY 76 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444445556666677766665544
No 215
>PF05356 Phage_Coat_B: Phage Coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 1QL1_A 2XKM_A 4IFM_A 1QL2_A 1IFM_A 2KLV_A 1IFN_A 2IFN_A 3IFM_A 2KSJ_A ....
Probab=20.03 E-value=1.4e+02 Score=21.61 Aligned_cols=19 Identities=37% Similarity=0.651 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 039173 246 IILLCVILGIASYLYQALK 264 (265)
Q Consensus 246 i~llivil~l~~~~~~~~k 264 (265)
|+-.+++|.++.+||.|++
T Consensus 63 IVgvl~~laVaGlI~~l~R 81 (83)
T PF05356_consen 63 IVGVLVILAVAGLIYSLLR 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4444455666677788765
Done!