Query 039173
Match_columns 265
No_of_seqs 197 out of 980
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 11:37:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039173.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039173hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nps_D Syntaxin-6; vesicle fus 99.7 8.3E-17 2.8E-21 117.8 9.3 66 174-239 15-80 (82)
2 1gl2_D Syntaxin 8, vesicle tra 99.6 1.2E-15 4.3E-20 106.7 7.7 61 174-234 5-65 (65)
3 1n7s_D SNAP-25A; neuronal snar 99.6 7E-15 2.4E-19 103.1 8.0 60 174-233 6-65 (66)
4 1sfc_D Protein (SNAP-25B), pro 99.6 1.2E-14 4E-19 107.5 8.5 62 174-235 25-86 (87)
5 1l4a_D S-SNAP25 fusion protein 99.5 1.3E-14 4.5E-19 107.1 6.4 62 174-235 26-87 (87)
6 3b5n_D Protein transport prote 99.5 1.5E-13 5E-18 95.5 8.1 59 174-232 6-64 (64)
7 3hd7_B Syntaxin-1A; membrane p 99.3 3.8E-11 1.3E-15 92.2 11.9 73 174-246 17-89 (109)
8 4dnd_A Syntaxin-10, SYN10; str 98.9 7.6E-09 2.6E-13 81.6 9.8 101 25-125 17-129 (130)
9 2c5k_T Syntaxin TLG1, T-snare 98.7 2.6E-08 8.8E-13 74.3 6.7 89 32-125 4-92 (95)
10 1jth_B Syntaxin 1A; coiled-coi 98.5 7.3E-07 2.5E-11 63.9 9.6 70 174-243 6-75 (77)
11 2nps_B Syntaxin 13, vesicle-as 98.4 1.6E-06 5.6E-11 61.1 9.7 69 175-243 3-71 (71)
12 3b5n_B Protein SSO1; snare com 98.1 3.9E-05 1.3E-09 53.6 9.9 63 174-236 6-68 (69)
13 1sfc_B Protein (syntaxin 1A), 98.0 5.4E-05 1.9E-09 54.8 9.9 65 174-238 17-81 (83)
14 1dn1_B Syntaxin 1A, syntaxin b 98.0 1.7E-05 5.7E-10 69.8 8.0 206 34-243 31-265 (267)
15 1gl2_B Syntaxin 7; membrane pr 97.9 4.8E-05 1.6E-09 52.5 8.3 59 174-232 5-63 (65)
16 1n7s_B Syntaxin 1A; neuronal s 97.9 7.2E-05 2.5E-09 52.1 8.8 60 174-233 8-67 (68)
17 2xhe_B Syntaxin1; exocytosis, 97.1 0.00021 7.2E-09 63.0 3.3 64 174-237 213-276 (279)
18 3hd7_B Syntaxin-1A; membrane p 96.5 0.081 2.8E-06 39.8 13.1 74 174-251 24-97 (109)
19 3hd7_A Vesicle-associated memb 96.1 0.13 4.3E-06 37.5 11.5 56 180-235 7-62 (91)
20 1n7s_C SNAP-25A; neuronal snar 95.1 0.51 1.7E-05 33.3 11.4 60 174-233 16-78 (79)
21 1nhl_A Synaptosomal-associated 94.4 0.35 1.2E-05 31.6 8.4 47 185-231 7-53 (54)
22 1l4a_C S-SNAP25 fusion protein 94.2 0.13 4.5E-06 36.8 6.3 58 174-231 20-80 (83)
23 3c98_B Syntaxin-1A; protein co 92.5 0.014 4.8E-07 50.1 -1.3 70 174-243 208-277 (279)
24 3b5n_C Protein transport prote 92.3 1.6 5.4E-05 30.1 9.2 57 177-233 8-67 (70)
25 1gl2_C VTI1B, vesicle transpor 91.4 1.4 4.6E-05 29.8 8.1 56 177-232 8-63 (65)
26 2nps_C Vesicle transport throu 91.3 2.3 8E-05 30.0 9.5 62 175-236 16-77 (81)
27 3hd7_A Vesicle-associated memb 89.6 4.4 0.00015 29.1 10.6 7 223-229 53-59 (91)
28 2kog_A Vesicle-associated memb 89.0 0.046 1.6E-06 42.0 -1.3 36 200-235 55-90 (119)
29 2d9d_A BAG family molecular ch 82.9 5.7 0.0002 28.1 7.0 70 7-91 9-79 (89)
30 3ghg_A Fibrinogen alpha chain; 66.7 24 0.00083 33.3 8.8 17 4-20 60-76 (562)
31 1ic2_A Tropomyosin alpha chain 63.0 35 0.0012 23.6 10.7 58 178-235 20-77 (81)
32 1pi7_A VPU protein, U ORF prot 58.5 10 0.00034 22.5 3.0 19 245-263 7-25 (36)
33 2l3l_A Tubulin-specific chaper 56.7 57 0.002 24.1 8.4 76 32-124 32-107 (111)
34 3efg_A Protein SLYX homolog; x 55.0 27 0.00093 24.2 5.4 50 176-225 12-61 (78)
35 1s94_A S-syntaxin; three helix 52.9 82 0.0028 24.8 9.6 55 71-126 88-144 (180)
36 1fjk_A Cardiac phospholamban; 52.2 8 0.00027 24.0 1.9 10 241-250 34-43 (52)
37 1ssz_A Pulmonary surfactant-as 51.4 5.5 0.00019 22.5 1.0 20 4-23 5-24 (34)
38 1ez3_A Syntaxin-1A; three heli 46.7 83 0.0028 23.0 10.3 55 71-125 57-112 (127)
39 2lk9_A Bone marrow stromal ant 44.5 19 0.00064 20.9 2.6 13 245-257 10-22 (35)
40 1pfi_A Major coat protein of P 44.2 22 0.00076 21.6 3.0 20 245-264 25-44 (46)
41 3arc_I Photosystem II reaction 42.6 30 0.001 20.5 3.3 19 247-265 8-26 (38)
42 2l34_A TYRO protein tyrosine k 41.4 30 0.001 19.9 3.2 17 249-265 17-33 (33)
43 3a7p_A Autophagy protein 16; c 41.3 1.3E+02 0.0043 23.6 9.7 61 176-236 66-126 (152)
44 3p8c_F ABL interactor 2; actin 39.4 1.4E+02 0.0048 23.6 8.5 51 178-228 54-104 (159)
45 1qoy_A Hemolysin E; toxin, mem 39.1 70 0.0024 28.1 6.6 42 177-219 22-63 (318)
46 1jcd_A Major outer membrane li 36.1 84 0.0029 20.0 7.6 44 180-230 6-49 (52)
47 2l8s_A Integrin alpha-1; trans 35.8 42 0.0014 21.7 3.5 7 240-246 8-14 (54)
48 1vcs_A Vesicle transport throu 35.8 1.2E+02 0.0041 21.8 8.5 84 34-125 8-91 (102)
49 1gmj_A ATPase inhibitor; coile 35.1 1.2E+02 0.004 21.4 6.8 43 174-226 36-78 (84)
50 1yod_A Water-solublized phosph 33.6 35 0.0012 18.9 2.5 11 241-251 13-23 (30)
51 1rh5_B Preprotein translocase 32.8 56 0.0019 22.4 4.0 25 215-239 5-29 (74)
52 2knc_A Integrin alpha-IIB; tra 32.8 42 0.0015 21.6 3.2 7 240-246 11-17 (54)
53 1g6u_A Domain swapped dimer; d 32.7 82 0.0028 18.9 5.0 25 97-121 16-40 (48)
54 3u1c_A Tropomyosin alpha-1 cha 32.6 1.4E+02 0.0047 21.5 10.2 57 178-234 23-79 (101)
55 3nmd_A CGMP dependent protein 32.5 98 0.0034 21.1 5.2 25 100-124 46-70 (72)
56 2qyw_A Vesicle transport throu 31.6 1.4E+02 0.0049 21.4 9.6 48 76-123 50-100 (102)
57 3na7_A HP0958; flagellar bioge 29.9 2.1E+02 0.0072 23.8 8.2 55 177-231 31-85 (256)
58 2ww9_B Protein transport prote 27.9 1.5E+02 0.0051 20.6 5.6 26 214-239 17-42 (80)
59 3onj_A T-snare VTI1; helix, HA 26.6 1.7E+02 0.0059 20.7 8.3 26 99-124 63-89 (97)
60 3mtu_E Head morphogenesis prot 26.5 1.6E+02 0.0055 20.3 6.8 46 157-203 24-69 (77)
61 3oja_B Anopheles plasmodium-re 26.5 3.8E+02 0.013 24.7 16.7 63 175-237 520-582 (597)
62 3mp7_B Preprotein translocase 25.9 99 0.0034 20.3 4.2 18 222-239 8-25 (61)
63 2w1k_A Putative sortase; pilus 25.9 14 0.00049 31.5 0.0 24 242-265 225-248 (252)
64 3nmd_A CGMP dependent protein 25.7 1.6E+02 0.0055 20.0 6.7 9 207-215 41-49 (72)
65 2k1a_A Integrin alpha-IIB; sin 25.5 82 0.0028 19.1 3.4 7 240-246 9-15 (42)
66 3ghg_A Fibrinogen alpha chain; 24.3 2.8E+02 0.0097 26.2 8.3 57 179-235 103-160 (562)
67 1urq_A M-tomosyn isoform; tran 24.2 1.6E+02 0.0053 19.4 8.6 54 181-234 7-60 (63)
68 1fio_A SSO1 protein; four heli 23.6 1.7E+02 0.0058 23.0 6.2 31 174-204 165-195 (196)
69 3fym_A Putative uncharacterize 22.9 18 0.00061 27.2 0.0 18 95-112 14-31 (130)
70 3u59_A Tropomyosin beta chain; 22.8 2.1E+02 0.0072 20.3 10.6 55 178-232 23-77 (101)
71 3efg_A Protein SLYX homolog; x 22.6 1.9E+02 0.0065 19.8 6.5 20 174-193 24-43 (78)
72 2l5g_B Putative uncharacterize 20.1 1.6E+02 0.0054 17.9 4.5 28 208-235 11-38 (42)
73 3arc_H Photosystem II reaction 20.0 93 0.0032 20.7 3.0 18 244-261 32-49 (65)
74 2l6w_A Beta-type platelet-deri 24.8 23 0.00079 21.3 0.0 14 248-261 20-33 (39)
No 1
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=99.69 E-value=8.3e-17 Score=117.82 Aligned_cols=66 Identities=21% Similarity=0.370 Sum_probs=61.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCC
Q 039173 174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSS 239 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~ 239 (265)
++||+.||.|+.+|++||++|.+||+||+.||+|||+|+++||++..+|..+++|+++++++++++
T Consensus 15 ~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~~~ 80 (82)
T 2nps_D 15 RMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDR 80 (82)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcC
Confidence 899999999999999999999999999999999999999999999999999999999999997644
No 2
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.61 E-value=1.2e-15 Score=106.68 Aligned_cols=61 Identities=26% Similarity=0.419 Sum_probs=53.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 039173 174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLL 234 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~ 234 (265)
++||+.||.|+.+|++||++|.+||+||+.||++||+++++||++..+|..+++|++++++
T Consensus 5 ~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l~k 65 (65)
T 1gl2_D 5 QEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLVDR 65 (65)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 7999999999999999999999999999999999999999999999999999999998864
No 3
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=99.57 E-value=7e-15 Score=103.15 Aligned_cols=60 Identities=32% Similarity=0.463 Sum_probs=58.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 039173 174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETL 233 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~ 233 (265)
.+||+.|+.|+.+|++||++|.+||+||+.||++||+|+.+||++..+|..+++|+++++
T Consensus 6 ~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ll 65 (66)
T 1n7s_D 6 NEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHc
Confidence 799999999999999999999999999999999999999999999999999999999875
No 4
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.55 E-value=1.2e-14 Score=107.46 Aligned_cols=62 Identities=31% Similarity=0.425 Sum_probs=60.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 039173 174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLK 235 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~ 235 (265)
++||+.|+.|+.+|++||++|.+||+||+.||++||+|+.+||++..+|..+++|+++++++
T Consensus 25 ~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll~k 86 (87)
T 1sfc_D 25 NEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGS 86 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 79999999999999999999999999999999999999999999999999999999999875
No 5
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.52 E-value=1.3e-14 Score=107.06 Aligned_cols=62 Identities=23% Similarity=0.384 Sum_probs=59.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 039173 174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLK 235 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~ 235 (265)
.+||+.|+.|+.+|++||++|.+||+||+.||++||.|+++||++..+|..+++|+++++++
T Consensus 26 ~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kll~k 87 (87)
T 1l4a_D 26 DDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLLKN 87 (87)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHCC--
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 68999999999999999999999999999999999999999999999999999999998764
No 6
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=99.47 E-value=1.5e-13 Score=95.47 Aligned_cols=59 Identities=31% Similarity=0.428 Sum_probs=57.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 039173 174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKET 232 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~ 232 (265)
.+||+.|++|+..+++||++|.+||+||+.||++||.|+.++|++..++..+++|++++
T Consensus 6 ~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~i 64 (64)
T 3b5n_D 6 LEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAGI 64 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 68999999999999999999999999999999999999999999999999999999864
No 7
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=99.29 E-value=3.8e-11 Score=92.22 Aligned_cols=73 Identities=18% Similarity=0.226 Sum_probs=65.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchHHHH
Q 039173 174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFCIDI 246 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~ci~i 246 (265)
++.++++..|..++..|+++..+|+..|.+|++++|.++..++.+...+..++..+++..+..++.++|+|++
T Consensus 17 ~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i~ 89 (109)
T 3hd7_B 17 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMI 89 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceeh
Confidence 6788999999999999999999999999999999999999999999999999999999977766654444333
No 8
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=98.90 E-value=7.6e-09 Score=81.58 Aligned_cols=101 Identities=14% Similarity=0.118 Sum_probs=69.6
Q ss_pred hhhccCCC-CChHHHHHHHHHHHHHHHHHHHhhhhh---hh---hhHHhhhhhHHHHHHHHHHHhhHHHHHHHHH--H--
Q 039173 25 QRDLNAHG-DDAFARFYATVESEIDKALLKAETASM---ET---NRAAAVAMKAEVRRTKARLLEEVPKLQKLAR--K-- 93 (265)
Q Consensus 25 ~~~~~~~~-~Dpw~~~~~~~~~~l~~~l~~~~~~~~---~~---~~~~~~~~~~eiR~~l~~l~~~l~~L~~~l~--k-- 93 (265)
|---|+.+ .|||+.+..+++..|..+......... .. +......+..||+..|..++++|++|++++. +
T Consensus 17 ~~~~~~ms~~DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~n 96 (130)
T 4dnd_A 17 NLYFQSMSLEDPFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEAN 96 (130)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ceeeecCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33345544 599999998988777766433332211 10 1112345678999999999999999999972 2
Q ss_pred -hcCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 039173 94 -KVKGLSKEEQETRHDLVLGLSERIEAIPDGNT 125 (265)
Q Consensus 94 -k~~~lt~~El~~R~~~v~~l~~~~~~l~~~~~ 125 (265)
.+|+|++.|+.+|+.||..++.++..++..++
T Consensus 97 p~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~~l~ 129 (130)
T 4dnd_A 97 PGKFKLPAGDLQERKVFVERMREAVQEMKDHMV 129 (130)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35699999999999999999999999987653
No 9
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=98.71 E-value=2.6e-08 Score=74.33 Aligned_cols=89 Identities=11% Similarity=0.159 Sum_probs=68.3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhhhHHHHHHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 039173 32 GDDAFARFYATVESEIDKALLKAETASMETNRAAAVAMKAEVRRTKARLLEEVPKLQKLARKKVKGLSKEEQETRHDLVL 111 (265)
Q Consensus 32 ~~Dpw~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~eiR~~l~~l~~~l~~L~~~l~kk~~~lt~~El~~R~~~v~ 111 (265)
+.|||+++..++++.|..+.+...+... .....+..++...+..++++|.+|.+++.-.... ++.|+.+|+.+|.
T Consensus 4 s~DPF~~V~~D~~~ql~~l~~~~~~~~~----~~~~~~~~El~~~l~el~e~l~DL~~SI~i~e~~-~~~EI~~Rk~~v~ 78 (95)
T 2c5k_T 4 SEDPFQQVVKDTKEQLNRINNYITRHNT----AGDDDQEEEIQDILKDVEETIVDLDRSIIVMKRD-ENEDVSGREAQVK 78 (95)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHTCC----C--CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTS-TTCCCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHccC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Confidence 5699999999999888877554332111 1123566799999999999999999996211122 9999999999999
Q ss_pred HHHHHHHhcccccc
Q 039173 112 GLSERIEAIPDGNT 125 (265)
Q Consensus 112 ~l~~~~~~l~~~~~ 125 (265)
.++.+++.|+..++
T Consensus 79 ~l~~~i~~lk~~~~ 92 (95)
T 2c5k_T 79 NIKQQLDALKLRFD 92 (95)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987664
No 10
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=98.52 E-value=7.3e-07 Score=63.89 Aligned_cols=70 Identities=16% Similarity=0.212 Sum_probs=59.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchH
Q 039173 174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFC 243 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~c 243 (265)
++-++.+..|..++..|+++..+|..-|.+|+++||.|+..|+.+...+..++..+++..+..++.++++
T Consensus 6 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rkk~ 75 (77)
T 1jth_B 6 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKK 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 5667889999999999999999999999999999999999999999999999999999999877665554
No 11
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=98.45 E-value=1.6e-06 Score=61.06 Aligned_cols=69 Identities=14% Similarity=0.253 Sum_probs=61.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchH
Q 039173 175 KQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFC 243 (265)
Q Consensus 175 eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~c 243 (265)
+-++.+..|...+..|+++..+|..-|.+|+++||.|+..|+.+...+..++..|.+..+..++.++|+
T Consensus 3 eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~rk~~ 71 (71)
T 2nps_B 3 MRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRKKM 71 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 446788999999999999999999999999999999999999999999999999999999887766653
No 12
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=98.07 E-value=3.9e-05 Score=53.58 Aligned_cols=63 Identities=22% Similarity=0.241 Sum_probs=59.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHc
Q 039173 174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKV 236 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~ 236 (265)
++-++.+..|..++..|+++..++..-|.+|+++||.|+..|+.+...+..++..+++..+..
T Consensus 6 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q 68 (69)
T 3b5n_B 6 QARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKSA 68 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566788999999999999999999999999999999999999999999999999999987653
No 13
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=98.01 E-value=5.4e-05 Score=54.81 Aligned_cols=65 Identities=15% Similarity=0.228 Sum_probs=60.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccC
Q 039173 174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRS 238 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~ 238 (265)
++-++.+..|..++..|+++..+|..-|.+|+++||.|+..|+.+...+..++..|++..+..++
T Consensus 17 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~ 81 (83)
T 1sfc_B 17 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSK 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHc
Confidence 56778899999999999999999999999999999999999999999999999999999887553
No 14
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=97.97 E-value=1.7e-05 Score=69.81 Aligned_cols=206 Identities=13% Similarity=0.170 Sum_probs=106.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhhhhh------------hhHHhhhhhHHHHHHHHHHHhhHHHHHHHHHH-hcCCCCH
Q 039173 34 DAFARFYATVESEIDKALLKAETASMET------------NRAAAVAMKAEVRRTKARLLEEVPKLQKLARK-KVKGLSK 100 (265)
Q Consensus 34 Dpw~~~~~~~~~~l~~~l~~~~~~~~~~------------~~~~~~~~~~eiR~~l~~l~~~l~~L~~~l~k-k~~~lt~ 100 (265)
+.|+....++...|..+-...+...... .+.....+..++......+...|..|+..+.. ....-++
T Consensus 31 ~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~~~~~~~ 110 (267)
T 1dn1_B 31 DEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSS 110 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Confidence 3477777777766665422222111100 01112223344444455555555555544211 1123456
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccccC-------c----CC-CCCCCCCCCCCcc--cCC--CCCCCCccccCchhHHH
Q 039173 101 EEQETRHDLVLGLSERIEAIPDGNTNAT-------K----AN-GGWATSASNKNIK--FDS--DGNIGDDFFQQSEESSQ 164 (265)
Q Consensus 101 ~El~~R~~~v~~l~~~~~~l~~~~~~~~-------~----~~-~~~~~~~~~~~~~--~~~--~~~~~~~~~~~te~t~~ 164 (265)
.+.+-|+..+..|...+.++...|...- + +. ...|+..+...+. ++. ...+....+..+. .
T Consensus 111 ~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~~i~~~~~tdeeie~~ie~g~~~~f~q~~l~~~~---~ 187 (267)
T 1dn1_B 111 ADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSS---I 187 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTCSSCTTTTTCCCCSH---H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccCCCCCHHHHHHHHhCCcHHHHHHHHHHhhH---H
Confidence 7778889999999888887766554310 0 00 0001110000000 000 0011111111222 2
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchH
Q 039173 165 FRQEYEMRKMKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFC 243 (265)
Q Consensus 165 ~qQq~~~~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~c 243 (265)
.++.. ...++-++.+..|..+|..|+++..+|+.-|.+|+++||.|+..|+.+...+..++..|.+..+..++.++|.
T Consensus 188 ~~~~l-~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~q~~~rkk~ 265 (267)
T 1dn1_B 188 SKQAL-SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKK 265 (267)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-----------------
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 22221 1226778899999999999999999999999999999999999999999999999999999988887765553
No 15
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=97.95 E-value=4.8e-05 Score=52.50 Aligned_cols=59 Identities=15% Similarity=0.324 Sum_probs=55.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 039173 174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKET 232 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~ 232 (265)
++.++.+..|..++..|+++..++..-|.+|+++||.|+..|+.+...+..++..|++.
T Consensus 5 ~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA 63 (65)
T 1gl2_B 5 HERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRA 63 (65)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999999999999999999999999999999999999999999999874
No 16
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=97.91 E-value=7.2e-05 Score=52.05 Aligned_cols=60 Identities=17% Similarity=0.279 Sum_probs=56.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 039173 174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETL 233 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~ 233 (265)
++-++.+..|..++..|+++..++..-|.+|+++||.|+..|+.+...+..++..+++..
T Consensus 8 ~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 67 (68)
T 1n7s_B 8 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566788999999999999999999999999999999999999999999999999998753
No 17
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=97.15 E-value=0.00021 Score=63.02 Aligned_cols=64 Identities=16% Similarity=0.230 Sum_probs=47.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcc
Q 039173 174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVR 237 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~ 237 (265)
++-++.+..|..+|..|+++..+|+.-|.+|+++||.|+..|+.+...+..++..|.+..+..+
T Consensus 213 ~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~~~qk 276 (279)
T 2xhe_B 213 RDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARHYQE 276 (279)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 5667899999999999999999999999999999999999999999999999999998877654
No 18
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=96.54 E-value=0.081 Score=39.83 Aligned_cols=74 Identities=15% Similarity=0.110 Sum_probs=60.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchHHHHHHHHH
Q 039173 174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFCIDIILLCV 251 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~ci~i~lliv 251 (265)
++..+.+-+|++....+..+-..=|+-++.=..=++.....++.+...|..|.+-=++--+ +.+||++++++++
T Consensus 24 ~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rk----k~~i~l~~~~i~~ 97 (109)
T 3hd7_B 24 IKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARR----KKIMIIICCVILG 97 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----cceehHHHHHHHH
Confidence 5677888899999999999988889989988888999999999999999998766555433 4688877755443
No 19
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=96.08 E-value=0.13 Score=37.52 Aligned_cols=56 Identities=11% Similarity=0.107 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 039173 180 LDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLK 235 (265)
Q Consensus 180 Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~ 235 (265)
|..+..-|...+.+-..=-+.+-+-++-||.|.+..+.....=..=.+..+++-++
T Consensus 7 l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rk 62 (91)
T 3hd7_A 7 LQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK 62 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444333334455566667777777766555444444444444444
No 20
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=95.15 E-value=0.51 Score=33.34 Aligned_cols=60 Identities=18% Similarity=0.255 Sum_probs=50.2
Q ss_pred hhhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 039173 174 MKQDQGLDVISEG---LDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETL 233 (265)
Q Consensus 174 ~eqD~~Ld~l~~~---v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~ 233 (265)
.-+++.++.+..+ +....++|..+-.+|..|.+.|+.++..++.++..|+.+.+.|+.+-
T Consensus 16 ~~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~ 78 (79)
T 1n7s_C 16 QLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLG 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhc
Confidence 4566666666554 45677799999999999999999999999999999999999888764
No 21
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=94.43 E-value=0.35 Score=31.58 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 039173 185 EGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKE 231 (265)
Q Consensus 185 ~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~ 231 (265)
..+....++|..+-.+|..|.+.|+.++..+|..+..|+.+.+.|+.
T Consensus 7 ~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~~ 53 (54)
T 1nhl_A 7 GLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTE 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHhc
Confidence 34556778899999999999999999999999999999999887753
No 22
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=94.15 E-value=0.13 Score=36.81 Aligned_cols=58 Identities=22% Similarity=0.299 Sum_probs=47.1
Q ss_pred hhhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 039173 174 MKQDQGLDVISEGLD---TLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKE 231 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~---~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~ 231 (265)
.-+++.++.....+. .-.+.|..--.+|..|++.|+.++..+|..+..|+.+.+.|+.
T Consensus 20 ~~~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~ 80 (83)
T 1l4a_C 20 QVTDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEG 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456777877665554 4555888888999999999999999999999999988776654
No 23
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=92.52 E-value=0.014 Score=50.08 Aligned_cols=70 Identities=16% Similarity=0.212 Sum_probs=50.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchH
Q 039173 174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFC 243 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~c 243 (265)
++-...|..|...|..+.++...|..-+.+|..+++.|+..|+.+...+..++..+.+..+..++.++|-
T Consensus 208 ~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~q~~~Rkkk 277 (279)
T 3c98_B 208 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKK 277 (279)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 4667889999999999999999999999999999999999999999999999999999888877666664
No 24
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=92.26 E-value=1.6 Score=30.05 Aligned_cols=57 Identities=11% Similarity=0.153 Sum_probs=45.3
Q ss_pred hhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 039173 177 DQGLDVISEGL---DTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETL 233 (265)
Q Consensus 177 D~~Ld~l~~~v---~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~ 233 (265)
++.++.-...+ ..-.+.|..--.+|..|.+.|+.++..+|..+..++.+.++++.+-
T Consensus 8 ~esl~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk 67 (70)
T 3b5n_C 8 QSSVASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELK 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455444443 3445577788889999999999999999999999999999998763
No 25
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=91.44 E-value=1.4 Score=29.81 Aligned_cols=56 Identities=13% Similarity=0.211 Sum_probs=48.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 039173 177 DQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKET 232 (265)
Q Consensus 177 D~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~ 232 (265)
.+.|..-...+....++|..|-.+|..|.+-|......++.++..|..+.+-|+.+
T Consensus 8 ~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m 63 (65)
T 1gl2_C 8 TQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSM 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhh
Confidence 35566666778888999999999999999999999999999999999999877654
No 26
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=91.25 E-value=2.3 Score=29.95 Aligned_cols=62 Identities=13% Similarity=0.186 Sum_probs=55.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHc
Q 039173 175 KQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKV 236 (265)
Q Consensus 175 eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~ 236 (265)
.-.+.|..-...+..-.++|..|-.+|..|.+-|....+.++.+++.|..+.+-|+.+....
T Consensus 16 rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~ 77 (81)
T 2nps_C 16 RSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRI 77 (81)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Confidence 44567777778888999999999999999999999999999999999999999999887764
No 27
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=89.64 E-value=4.4 Score=29.14 Aligned_cols=7 Identities=14% Similarity=0.434 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 039173 223 KNNNVRL 229 (265)
Q Consensus 223 ~~~~~~l 229 (265)
.+..+++
T Consensus 53 ~~~A~~l 59 (91)
T 3hd7_A 53 ETSAAKL 59 (91)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 28
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=88.98 E-value=0.046 Score=41.96 Aligned_cols=36 Identities=11% Similarity=0.110 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 039173 200 ELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLK 235 (265)
Q Consensus 200 El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~ 235 (265)
.+-+-++-||.|.++.+.....=..=.+..+++.++
T Consensus 55 kvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rk 90 (119)
T 2kog_A 55 KVLERDQKLSELDDRADALQAGASQFETSAAKLKRK 90 (119)
T ss_dssp HHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777777777666444333334444444444
No 29
>2d9d_A BAG family molecular chaperone regulator 5; triple helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.87 E-value=5.7 Score=28.06 Aligned_cols=70 Identities=17% Similarity=0.318 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhccCchH-hhhhccCCCCChHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhhhHHHHHHHHHHHhhHH
Q 039173 7 LFRLDDICKKYDKYDIE-KQRDLNAHGDDAFARFYATVESEIDKALLKAETASMETNRAAAVAMKAEVRRTKARLLEEVP 85 (265)
Q Consensus 7 ~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dpw~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~eiR~~l~~l~~~l~ 85 (265)
|.+++.|++|....-++ .... ..+|+|+-. +.+|..++...++....+| +.||..-+...-++.
T Consensus 9 i~~Ie~v~~r~r~l~~ell~~~---~~s~~yl~~----k~eLq~Li~~LDev~~~~N--------pcIReaRRrAV~EvQ 73 (89)
T 2d9d_A 9 ILKIEKVLKRMREIKNELLQAQ---NPSELYLSS----KTELQGLIGQLDEVSLEKN--------PCIREARRRAVIEVQ 73 (89)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCS---CTTTHHHHH----HHHHHHHHHHHGGGCSCSS--------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc---CchHHHhhh----HHHHHHHHHHHhhcccCCC--------hHHHHHHHHHHHHHH
Confidence 45666666666555444 2222 225777666 7777777777776544444 478888888888888
Q ss_pred HHHHHH
Q 039173 86 KLQKLA 91 (265)
Q Consensus 86 ~L~~~l 91 (265)
.|-..+
T Consensus 74 ~lit~l 79 (89)
T 2d9d_A 74 TLITYI 79 (89)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877775
No 30
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=66.74 E-value=24 Score=33.30 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHhhccC
Q 039173 4 IDILFRLDDICKKYDKY 20 (265)
Q Consensus 4 ~~~~~r~~~~~~~~~~~ 20 (265)
+|+..|++.|..+|+.|
T Consensus 60 rDltkrINELKnqLEdl 76 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHHHHTHH
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 68999999999999766
No 31
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=62.99 E-value=35 Score=23.61 Aligned_cols=58 Identities=14% Similarity=0.162 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 039173 178 QGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLK 235 (265)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~ 235 (265)
..++.+..-+.....-+....+|+..-+.-+-.+++++|++..+|..++.+|...-+.
T Consensus 20 ~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~ 77 (81)
T 1ic2_A 20 DRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKK 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666667788899999999999999999999999999999999876554
No 32
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=58.52 E-value=10 Score=22.52 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 039173 245 DIILLCVILGIASYLYQAL 263 (265)
Q Consensus 245 ~i~llivil~l~~~~~~~~ 263 (265)
.++.+++.+++.+++|+++
T Consensus 7 ~ivalivalIiaIVVWtiv 25 (36)
T 1pi7_A 7 AIVALVVAIIIAIVVWSIV 25 (36)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666677777777754
No 33
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=56.72 E-value=57 Score=24.11 Aligned_cols=76 Identities=17% Similarity=0.178 Sum_probs=57.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhhhHHHHHHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 039173 32 GDDAFARFYATVESEIDKALLKAETASMETNRAAAVAMKAEVRRTKARLLEEVPKLQKLARKKVKGLSKEEQETRHDLVL 111 (265)
Q Consensus 32 ~~Dpw~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~eiR~~l~~l~~~l~~L~~~l~kk~~~lt~~El~~R~~~v~ 111 (265)
+.+-|+.-|..-...|...+.... +...+..+...|..|++.+.....=|++=++..-+..|.
T Consensus 32 ~~~~F~~~F~~~~~~Ie~~l~~~~-----------------~~~~ld~i~~~I~~Lqk~v~das~fLp~YD~R~~q~~i~ 94 (111)
T 2l3l_A 32 NSHFFVATFARERAAVEELLERAE-----------------SVERLEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALA 94 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC-----------------SHHHHHHHHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCc-----------------hhhHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHH
Confidence 446688888887777777663110 233466777778888888655667799999999999999
Q ss_pred HHHHHHHhccccc
Q 039173 112 GLSERIEAIPDGN 124 (265)
Q Consensus 112 ~l~~~~~~l~~~~ 124 (265)
.|+..+++....+
T Consensus 95 ~L~~~l~e~r~~l 107 (111)
T 2l3l_A 95 RLQAALAERRRGL 107 (111)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999876654
No 34
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=54.98 E-value=27 Score=24.23 Aligned_cols=50 Identities=12% Similarity=0.036 Sum_probs=27.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 039173 176 QDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNN 225 (265)
Q Consensus 176 qD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~ 225 (265)
.++.|+.|...+.-+-..-..+++.|-.|...||.+...+.....++...
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455555555555555555556666666677777666666665555543
No 35
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=52.93 E-value=82 Score=24.80 Aligned_cols=55 Identities=9% Similarity=0.172 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhccccccc
Q 039173 71 AEVRRTKARLLEEVPKLQKLARKKV--KGLSKEEQETRHDLVLGLSERIEAIPDGNTN 126 (265)
Q Consensus 71 ~eiR~~l~~l~~~l~~L~~~l~kk~--~~lt~~El~~R~~~v~~l~~~~~~l~~~~~~ 126 (265)
.++......+...|..|+... +.. .+.++.+.+-|+..+..|..++.++...|+.
T Consensus 88 ~~i~~~a~~ik~~Lk~l~~~~-~~~~~~~~~s~~~Rir~~q~~~L~~kf~~~m~~yq~ 144 (180)
T 1s94_A 88 TDIKRTANKVRGKLKTIELNI-EQEEHSNKSSADLRIRKTQYSTISRKFVEVMSDYNT 144 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHTC-----CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555442 211 1345567788999999999999988776653
No 36
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=52.18 E-value=8 Score=24.04 Aligned_cols=10 Identities=50% Similarity=1.085 Sum_probs=5.0
Q ss_pred chHHHHHHHH
Q 039173 241 NFCIDIILLC 250 (265)
Q Consensus 241 ~~ci~i~lli 250 (265)
+||+++++++
T Consensus 34 nfclilicll 43 (52)
T 1fjk_A 34 NFCLILIFLL 43 (52)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4675544433
No 37
>1ssz_A Pulmonary surfactant-associated protein B; LUNG surfactant protein, saposin, surface active protein; NMR {Synthetic}
Probab=51.41 E-value=5.5 Score=22.50 Aligned_cols=20 Identities=10% Similarity=0.092 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhhccCchH
Q 039173 4 IDILFRLDDICKKYDKYDIE 23 (265)
Q Consensus 4 ~~~~~r~~~~~~~~~~~~~~ 23 (265)
|-+|+|++++.-|+|...+.
T Consensus 5 r~likriqa~ipk~grmlpq 24 (34)
T 1ssz_A 5 RALIKRIQAMIPKGGRMLPQ 24 (34)
T ss_dssp HHHHHHHHHHCSSSCCCCHH
T ss_pred HHHHHHHHHHccccchhhHH
Confidence 67899999999999987764
No 38
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=46.74 E-value=83 Score=23.03 Aligned_cols=55 Identities=9% Similarity=0.170 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 039173 71 AEVRRTKARLLEEVPKLQKLARK-KVKGLSKEEQETRHDLVLGLSERIEAIPDGNT 125 (265)
Q Consensus 71 ~eiR~~l~~l~~~l~~L~~~l~k-k~~~lt~~El~~R~~~v~~l~~~~~~l~~~~~ 125 (265)
.++......+...|..|+..... ...+-+..+.+-|+..+..|...+.++...++
T Consensus 57 ~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~~~L~~kf~e~m~~y~ 112 (127)
T 1ez3_A 57 SDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYN 112 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555444211 11234567788899999999999988766554
No 39
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=44.52 E-value=19 Score=20.91 Aligned_cols=13 Identities=23% Similarity=0.460 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 039173 245 DIILLCVILGIAS 257 (265)
Q Consensus 245 ~i~llivil~l~~ 257 (265)
.++++++++++.+
T Consensus 10 Gvl~LLviV~LgV 22 (35)
T 2lk9_A 10 GILVLLIIVILGV 22 (35)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcc
Confidence 3444444444433
No 40
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=44.22 E-value=22 Score=21.64 Aligned_cols=20 Identities=35% Similarity=0.531 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 039173 245 DIILLCVILGIASYLYQALK 264 (265)
Q Consensus 245 ~i~llivil~l~~~~~~~~k 264 (265)
.|+-.++|+.++..+|.|++
T Consensus 25 ~IVGaLvil~VAGLiysm~R 44 (46)
T 1pfi_A 25 YIVGALVILAVAGLIYSMLR 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45666667777888999875
No 41
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=42.62 E-value=30 Score=20.54 Aligned_cols=19 Identities=11% Similarity=0.326 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 039173 247 ILLCVILGIASYLYQALKN 265 (265)
Q Consensus 247 ~llivil~l~~~~~~~~k~ 265 (265)
+-.+|++++.++++.++.|
T Consensus 8 Vy~vV~ffvsLFiFGfLsn 26 (38)
T 3arc_I 8 VYIVVTFFVLLFVFGFLSG 26 (38)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred ehhHHHHHHHHHHccccCC
Confidence 4455566666677776654
No 42
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=41.44 E-value=30 Score=19.95 Aligned_cols=17 Identities=24% Similarity=0.116 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHhcC
Q 039173 249 LCVILGIASYLYQALKN 265 (265)
Q Consensus 249 livil~l~~~~~~~~k~ 265 (265)
+++++++++.+|.+.||
T Consensus 17 i~~t~~i~~~vy~~~r~ 33 (33)
T 2l34_A 17 LVLTVLIALAVYFLGRL 33 (33)
T ss_dssp HHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhheecC
Confidence 33444455555666664
No 43
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=41.35 E-value=1.3e+02 Score=23.62 Aligned_cols=61 Identities=8% Similarity=0.056 Sum_probs=53.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHc
Q 039173 176 QDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKV 236 (265)
Q Consensus 176 qD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~ 236 (265)
+.+.+..|...+..+..--.+...|+...+..++.+.+.+...+-.+..+..++.++-+.+
T Consensus 66 ~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN 126 (152)
T 3a7p_A 66 LLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888888888888889999999999999999999999999999999988888886654
No 44
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=39.37 E-value=1.4e+02 Score=23.55 Aligned_cols=51 Identities=10% Similarity=0.172 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 039173 178 QGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVR 228 (265)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~ 228 (265)
=.-..|...+-.+..+|..+-+-|+.|..-+..++..|......+..=..+
T Consensus 54 Ya~qsLaSVAyqIn~lA~~ll~lLd~Q~~~l~~mes~v~~l~Q~v~ih~EK 104 (159)
T 3p8c_F 54 YTTQSLASVAYLINTLANNVLQMLDIQASQLRRMESSINHISQTVDIHKEK 104 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678889999999999999999999999999999999877776543333
No 45
>1qoy_A Hemolysin E; toxin, membrane pore former, cytolysin, pores; 2.0A {Escherichia coli} SCOP: h.4.4.1 PDB: 2wcd_A
Probab=39.12 E-value=70 Score=28.13 Aligned_cols=42 Identities=19% Similarity=0.368 Sum_probs=31.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039173 177 DQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKAT 219 (265)
Q Consensus 177 D~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~ 219 (265)
|+.++.+..++..+..+....+.|++.+-. +.+|++.+|...
T Consensus 22 ~~~~e~vk~al~Sls~iv~kY~~elD~kvk-f~~LQ~aId~ID 63 (318)
T 1qoy_A 22 DKTVEVVKNAIETADGALDLYNKYLDQVIP-WQTFDETIKELS 63 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHSC-HHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHH
Confidence 567888888899999999999999987754 345555555443
No 46
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=36.05 E-value=84 Score=20.01 Aligned_cols=44 Identities=18% Similarity=0.157 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 039173 180 LDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLK 230 (265)
Q Consensus 180 Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~ 230 (265)
+++|+.-|+.|......+..++.. +..++..+...-.++|.||.
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~a-------l~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANA-------ARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhh
Confidence 344444444444444444443332 33344455555555555554
No 47
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=35.83 E-value=42 Score=21.67 Aligned_cols=7 Identities=14% Similarity=0.121 Sum_probs=3.3
Q ss_pred CchHHHH
Q 039173 240 RNFCIDI 246 (265)
Q Consensus 240 ~~~ci~i 246 (265)
..|.|++
T Consensus 8 p~WiIi~ 14 (54)
T 2l8s_A 8 PLWVILL 14 (54)
T ss_dssp CTHHHHH
T ss_pred chHHHHH
Confidence 4455444
No 48
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=35.83 E-value=1.2e+02 Score=21.76 Aligned_cols=84 Identities=10% Similarity=0.198 Sum_probs=42.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhhhHHHHHHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 039173 34 DAFARFYATVESEIDKALLKAETASMETNRAAAVAMKAEVRRTKARLLEEVPKLQKLARKKVKGLSKEEQETRHDLVLGL 113 (265)
Q Consensus 34 Dpw~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~eiR~~l~~l~~~l~~L~~~l~kk~~~lt~~El~~R~~~v~~l 113 (265)
+.|...|..+..+|...+........+ .+. ..=.++...+..+.+-|..++-- ...+++..-..-...|..+
T Consensus 8 e~YE~df~~l~~~i~~kl~~i~~~~ge-erk---~~i~~ie~~l~EA~ell~qMelE----~r~~p~~~R~~~~~klr~Y 79 (102)
T 1vcs_A 8 EGYEQDFAVLTAEITSKIARVPRLPPD-EKK---QMVANVEKQLEEARELLEQMDLE----VREIPPQSRGMYSNRMRSY 79 (102)
T ss_dssp CCSHHHHHHHHHHHHHHHHHGGGSCTT-THH---HHHHHHHHHHHHHHHHHHHHHHH----HTTSCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCcH-HHH---HHHHHHHHHHHHHHHHHHHHHHH----HHhCCHHhHHHHHHHHHHH
Confidence 457778888888888777654322111 110 00113333444444444433221 1345555445555667777
Q ss_pred HHHHHhcccccc
Q 039173 114 SERIEAIPDGNT 125 (265)
Q Consensus 114 ~~~~~~l~~~~~ 125 (265)
+.++..++..+.
T Consensus 80 k~dL~~lk~elk 91 (102)
T 1vcs_A 80 KQEMGKLETDFK 91 (102)
T ss_dssp HHHHHHHHHHTH
T ss_pred HHHHHHHHHHHH
Confidence 777777766554
No 49
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=35.10 E-value=1.2e+02 Score=21.38 Aligned_cols=43 Identities=9% Similarity=0.310 Sum_probs=31.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 039173 174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNN 226 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~ 226 (265)
+.+-++|..|...+ -+||+.|.+-|+.++..+++...+|+...
T Consensus 36 qkekEqL~~LKkkl----------~~el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 36 ARAKEQLAALKKHK----------ENEISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456666655444 78899999999999999888777766543
No 50
>1yod_A Water-solublized phospholamban; protein design, water-soluble, de novo protein; 1.80A {Synthetic}
Probab=33.60 E-value=35 Score=18.89 Aligned_cols=11 Identities=27% Similarity=0.353 Sum_probs=5.5
Q ss_pred chHHHHHHHHH
Q 039173 241 NFCIDIILLCV 251 (265)
Q Consensus 241 ~~ci~i~lliv 251 (265)
+||++.+++.+
T Consensus 13 NfcLilICllL 23 (30)
T 1yod_A 13 NRCLREICQEL 23 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 36755544433
No 51
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=32.79 E-value=56 Score=22.44 Aligned_cols=25 Identities=12% Similarity=0.173 Sum_probs=11.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHccCC
Q 039173 215 VDKATSDLKNNNVRLKETLLKVRSS 239 (265)
Q Consensus 215 vd~~~~~l~~~~~~l~~~~~~~~~~ 239 (265)
++...+.++.--+.-.++++..+.+
T Consensus 5 ~~~~~e~~~~f~kd~~rvlk~~~KP 29 (74)
T 1rh5_B 5 FNQKIEQLKEFIEECRRVWLVLKKP 29 (74)
T ss_dssp -------CCHHHHHHHHHHHSEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3444445555556667788877654
No 52
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=32.77 E-value=42 Score=21.62 Aligned_cols=7 Identities=0% Similarity=0.054 Sum_probs=3.1
Q ss_pred CchHHHH
Q 039173 240 RNFCIDI 246 (265)
Q Consensus 240 ~~~ci~i 246 (265)
..|.+++
T Consensus 11 p~wiIi~ 17 (54)
T 2knc_A 11 PIWWVLV 17 (54)
T ss_dssp CHHHHHH
T ss_pred chHHHHH
Confidence 4454433
No 53
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=32.67 E-value=82 Score=18.89 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=14.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhcc
Q 039173 97 GLSKEEQETRHDLVLGLSERIEAIP 121 (265)
Q Consensus 97 ~lt~~El~~R~~~v~~l~~~~~~l~ 121 (265)
+++++|+..-..-+..+...+..++
T Consensus 16 gfspeelaaleselqalekklaalk 40 (48)
T 1g6u_A 16 GFSPEELAALESELQALEKKLAALK 40 (48)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777666555555555554443
No 54
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=32.64 E-value=1.4e+02 Score=21.46 Aligned_cols=57 Identities=5% Similarity=0.047 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 039173 178 QGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLL 234 (265)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~ 234 (265)
+..+.+...+.....-+....+|+..-+.-+..+++++|++...|..++.++...-+
T Consensus 23 drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek 79 (101)
T 3u1c_A 23 DRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEE 79 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666777777788888888888888888888999888888888877765533
No 55
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=32.50 E-value=98 Score=21.11 Aligned_cols=25 Identities=12% Similarity=0.193 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccc
Q 039173 100 KEEQETRHDLVLGLSERIEAIPDGN 124 (265)
Q Consensus 100 ~~El~~R~~~v~~l~~~~~~l~~~~ 124 (265)
+.++..+...+..|++++..+++.+
T Consensus 46 Ek~L~ekd~eI~~LqseLDKfrSVl 70 (72)
T 3nmd_A 46 ELELDQKDELIQMLQNELDKYRSVI 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccC
Confidence 4456777888888888888876543
No 56
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=31.57 E-value=1.4e+02 Score=21.36 Aligned_cols=48 Identities=2% Similarity=-0.042 Sum_probs=27.7
Q ss_pred HHHHHHhhHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHhcccc
Q 039173 76 TKARLLEEVPKLQKLARK---KVKGLSKEEQETRHDLVLGLSERIEAIPDG 123 (265)
Q Consensus 76 ~l~~l~~~l~~L~~~l~k---k~~~lt~~El~~R~~~v~~l~~~~~~l~~~ 123 (265)
.+..++..|+..++.|.+ ....+++..-..-...|..+++++..++..
T Consensus 50 ~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~lk~e 100 (102)
T 2qyw_A 50 LVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHRE 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555444444311 123667766666677788888888777653
No 57
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=29.95 E-value=2.1e+02 Score=23.82 Aligned_cols=55 Identities=11% Similarity=0.170 Sum_probs=38.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 039173 177 DQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKE 231 (265)
Q Consensus 177 D~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~ 231 (265)
-..|+.+...+..++.-...+..++++-..-+..++.+++.+..++.....++..
T Consensus 31 p~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~ 85 (256)
T 3na7_A 31 RKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE 85 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3556666666666777777777777777777777777777777777777776643
No 58
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=27.86 E-value=1.5e+02 Score=20.62 Aligned_cols=26 Identities=15% Similarity=0.052 Sum_probs=13.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHccCC
Q 039173 214 KVDKATSDLKNNNVRLKETLLKVRSS 239 (265)
Q Consensus 214 ~vd~~~~~l~~~~~~l~~~~~~~~~~ 239 (265)
.++.....++.--+.-.++++..+.+
T Consensus 17 ~~~~~~e~~~~f~kd~~rvlk~~~KP 42 (80)
T 2ww9_B 17 QVEKLVEAPVEFVREGTQFLAKCKKP 42 (80)
T ss_dssp ----CCHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33444455555556667777777654
No 59
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=26.62 E-value=1.7e+02 Score=20.69 Aligned_cols=26 Identities=15% Similarity=0.115 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHh-ccccc
Q 039173 99 SKEEQETRHDLVLGLSERIEA-IPDGN 124 (265)
Q Consensus 99 t~~El~~R~~~v~~l~~~~~~-l~~~~ 124 (265)
++..-..-...|..++.++.. ++..+
T Consensus 63 p~~~R~~~~~klr~Yk~dl~~~lk~~l 89 (97)
T 3onj_A 63 DASERATYKAKLREWKKTIQSDIKRPL 89 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555556667777777777 66544
No 60
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=26.54 E-value=1.6e+02 Score=20.30 Aligned_cols=46 Identities=22% Similarity=0.253 Sum_probs=33.7
Q ss_pred cCchhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039173 157 QQSEESSQFRQEYEMRKMKQDQGLDVISEGLDTLKNLALDMNEELDR 203 (265)
Q Consensus 157 ~~te~t~~~qQq~~~~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~ 203 (265)
.+++.|..+ ||....---..+.+|.|...+...|.--..|.++++.
T Consensus 24 ~~~~~~~~~-~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~eeLDq 69 (77)
T 3mtu_E 24 AQSERTEAL-QQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQMLDQ 69 (77)
T ss_dssp -CHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 455666555 4444433467899999999999999999999998764
No 61
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=26.50 E-value=3.8e+02 Score=24.68 Aligned_cols=63 Identities=11% Similarity=0.018 Sum_probs=47.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcc
Q 039173 175 KQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVR 237 (265)
Q Consensus 175 eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~ 237 (265)
.....+..+.+.+...+.....+..|++.-...++.....+......+...+.+++.+.++..
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 520 FKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334556666777777777777777777777788888888888888888888888888887753
No 62
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=25.89 E-value=99 Score=20.30 Aligned_cols=18 Identities=6% Similarity=0.147 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHccCC
Q 039173 222 LKNNNVRLKETLLKVRSS 239 (265)
Q Consensus 222 l~~~~~~l~~~~~~~~~~ 239 (265)
++.--+.-.+++++.+.+
T Consensus 8 ~~~f~kd~~rvlk~~~KP 25 (61)
T 3mp7_B 8 IRHFWKESRRAFLVTKKP 25 (61)
T ss_dssp CTTHHHHHTHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 333445566777776654
No 63
>2w1k_A Putative sortase; pilus, pneumococcus, pathogenicity, transferase; HET: MES; 2.14A {Streptococcus pneumoniae}
Probab=25.88 E-value=14 Score=31.51 Aligned_cols=24 Identities=17% Similarity=0.265 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcC
Q 039173 242 FCIDIILLCVILGIASYLYQALKN 265 (265)
Q Consensus 242 ~ci~i~llivil~l~~~~~~~~k~ 265 (265)
|.+.+++++.++++++++|.++|+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~ 248 (252)
T 2w1k_A 225 WLYRGLVVLAFLGILFVLWKLARL 248 (252)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443445555555566677776653
No 64
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=25.71 E-value=1.6e+02 Score=20.03 Aligned_cols=9 Identities=44% Similarity=0.870 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 039173 207 LIDEIDTKV 215 (265)
Q Consensus 207 lLd~l~~~v 215 (265)
++++++..+
T Consensus 41 ~I~eLEk~L 49 (72)
T 3nmd_A 41 LIDELELEL 49 (72)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 65
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=25.51 E-value=82 Score=19.11 Aligned_cols=7 Identities=0% Similarity=0.054 Sum_probs=2.9
Q ss_pred CchHHHH
Q 039173 240 RNFCIDI 246 (265)
Q Consensus 240 ~~~ci~i 246 (265)
..|.+.+
T Consensus 9 p~wiIi~ 15 (42)
T 2k1a_A 9 PIWWVLV 15 (42)
T ss_dssp CHHHHHH
T ss_pred chHHHHH
Confidence 3454333
No 66
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=24.30 E-value=2.8e+02 Score=26.16 Aligned_cols=57 Identities=14% Similarity=0.154 Sum_probs=38.7
Q ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 039173 179 GLDVISEGLD-TLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLK 235 (265)
Q Consensus 179 ~Ld~l~~~v~-~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~ 235 (265)
+.+.....+. .|...-..|..+|+.|-..|.-|...++....+|++.-.-|.--++.
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirs 160 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRS 160 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333 66777777888888888888888888888877777766665554444
No 67
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=24.22 E-value=1.6e+02 Score=19.36 Aligned_cols=54 Identities=9% Similarity=0.115 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 039173 181 DVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLL 234 (265)
Q Consensus 181 d~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~ 234 (265)
..+...|+..+.+...--+.|-+=++-|+.|++..+.....=..=.+...++.+
T Consensus 7 ~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~ 60 (63)
T 1urq_A 7 EGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMML 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555556666666777776666654443333333333333
No 68
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=23.63 E-value=1.7e+02 Score=22.99 Aligned_cols=31 Identities=26% Similarity=0.249 Sum_probs=26.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039173 174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQ 204 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q 204 (265)
++-++.+-.|..+|..|+++..+|+.-|.+|
T Consensus 165 ~eR~~eI~~IE~sI~EL~qiF~Dla~LV~~Q 195 (196)
T 1fio_A 165 QARHQELLKLEKSMAELTQLFNDMEELVIEQ 195 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6778999999999999999999998766555
No 69
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=22.87 E-value=18 Score=27.23 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=12.2
Q ss_pred cCCCCHHHHHHHHHHHHH
Q 039173 95 VKGLSKEEQETRHDLVLG 112 (265)
Q Consensus 95 ~~~lt~~El~~R~~~v~~ 112 (265)
..++|.+|+.++-..=..
T Consensus 14 ~~gltq~elA~~~gis~~ 31 (130)
T 3fym_A 14 RLGMTLTELEQRTGIKRE 31 (130)
T ss_dssp HTTCCHHHHHHHHCCCHH
T ss_pred HcCCCHHHHHHHHCcCHH
Confidence 358999999887544333
No 70
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=22.80 E-value=2.1e+02 Score=20.33 Aligned_cols=55 Identities=11% Similarity=0.185 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 039173 178 QGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKET 232 (265)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~ 232 (265)
...+.+...+.....-+....+|+..-+.-+..+++++|.+...|..++.++...
T Consensus 23 d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ 77 (101)
T 3u59_A 23 DRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666777777777777777788888888888777777766544
No 71
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=22.60 E-value=1.9e+02 Score=19.78 Aligned_cols=20 Identities=30% Similarity=0.268 Sum_probs=11.3
Q ss_pred hhhhhhHHHHHHHHHHHHHH
Q 039173 174 MKQDQGLDVISEGLDTLKNL 193 (265)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~ 193 (265)
.-|+..++.|+..|.++...
T Consensus 24 AfqE~tIeeLn~~v~~Qq~~ 43 (78)
T 3efg_A 24 SFQEQALTELSEALADARLT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666555443
No 72
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=20.14 E-value=1.6e+02 Score=17.88 Aligned_cols=28 Identities=7% Similarity=0.211 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 039173 208 IDEIDTKVDKATSDLKNNNVRLKETLLK 235 (265)
Q Consensus 208 Ld~l~~~vd~~~~~l~~~~~~l~~~~~~ 235 (265)
++.++..+++|..++....++++.+-+.
T Consensus 11 I~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 11 MDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666677777777777777777666544
No 73
>3arc_H Photosystem II reaction center protein H; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3kzi_H* 3bz1_H* 1s5l_H* 2axt_H* 3bz2_H* 3prq_H* 3prr_H* 3a0b_H* 3a0h_H*
Probab=20.03 E-value=93 Score=20.70 Aligned_cols=18 Identities=28% Similarity=0.275 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039173 244 IDIILLCVILGIASYLYQ 261 (265)
Q Consensus 244 i~i~llivil~l~~~~~~ 261 (265)
+.+.+|.++++++.=+|+
T Consensus 32 v~m~Lf~vFl~iiLeIYN 49 (65)
T 3arc_H 32 VFMGLFLVFLLIILEIYN 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 344555555555555553
No 74
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=24.78 E-value=23 Score=21.26 Aligned_cols=14 Identities=36% Similarity=0.335 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 039173 248 LLCVILGIASYLYQ 261 (265)
Q Consensus 248 llivil~l~~~~~~ 261 (265)
++++.+++++++|.
T Consensus 20 i~iisLIiLi~~w~ 33 (39)
T 2l6w_A 20 LTIISLIILIMLWQ 33 (39)
Confidence 33344444445553
Done!