BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039176
(282 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4KM65|CPSF5_RAT Cleavage and polyadenylation specificity factor subunit 5 OS=Rattus
norvegicus GN=Nudt21 PE=2 SV=1
Length = 227
Score = 221 bits (563), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 105/171 (61%), Positives = 125/171 (73%), Gaps = 1/171 (0%)
Query: 50 VVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHIL 109
+N YPL++YTFGTKEP EKD+SVA R RM+ + K GMR +VE +L+V EH PH+L
Sbjct: 36 TINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVL 95
Query: 110 LLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWWRPNFE 169
LLQ+G TF KLPGG L PGE+E+EGLKR +T LG ++ DW I +C+ WWRPNFE
Sbjct: 96 LLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQD-GVLQDWVIDDCIGNWWRPNFE 154
Query: 170 TIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNV 220
YPY P HITKPKE KKLFLV L E+ FAVPKN KL+A PLFELYDN
Sbjct: 155 PPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNA 205
>sp|Q5RAI8|CPSF5_PONAB Cleavage and polyadenylation specificity factor subunit 5 OS=Pongo
abelii GN=NUDT21 PE=2 SV=1
Length = 227
Score = 221 bits (563), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 105/171 (61%), Positives = 125/171 (73%), Gaps = 1/171 (0%)
Query: 50 VVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHIL 109
+N YPL++YTFGTKEP EKD+SVA R RM+ + K GMR +VE +L+V EH PH+L
Sbjct: 36 TINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVL 95
Query: 110 LLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWWRPNFE 169
LLQ+G TF KLPGG L PGE+E+EGLKR +T LG ++ DW I +C+ WWRPNFE
Sbjct: 96 LLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQD-GVLQDWVIDDCIGNWWRPNFE 154
Query: 170 TIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNV 220
YPY P HITKPKE KKLFLV L E+ FAVPKN KL+A PLFELYDN
Sbjct: 155 PPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNA 205
>sp|Q9CQF3|CPSF5_MOUSE Cleavage and polyadenylation specificity factor subunit 5 OS=Mus
musculus GN=Nudt21 PE=2 SV=1
Length = 227
Score = 221 bits (563), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 105/171 (61%), Positives = 125/171 (73%), Gaps = 1/171 (0%)
Query: 50 VVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHIL 109
+N YPL++YTFGTKEP EKD+SVA R RM+ + K GMR +VE +L+V EH PH+L
Sbjct: 36 TINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVL 95
Query: 110 LLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWWRPNFE 169
LLQ+G TF KLPGG L PGE+E+EGLKR +T LG ++ DW I +C+ WWRPNFE
Sbjct: 96 LLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQD-GVLQDWVIDDCIGNWWRPNFE 154
Query: 170 TIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNV 220
YPY P HITKPKE KKLFLV L E+ FAVPKN KL+A PLFELYDN
Sbjct: 155 PPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNA 205
>sp|O43809|CPSF5_HUMAN Cleavage and polyadenylation specificity factor subunit 5 OS=Homo
sapiens GN=NUDT21 PE=1 SV=1
Length = 227
Score = 221 bits (563), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 105/171 (61%), Positives = 125/171 (73%), Gaps = 1/171 (0%)
Query: 50 VVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHIL 109
+N YPL++YTFGTKEP EKD+SVA R RM+ + K GMR +VE +L+V EH PH+L
Sbjct: 36 TINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVL 95
Query: 110 LLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWWRPNFE 169
LLQ+G TF KLPGG L PGE+E+EGLKR +T LG ++ DW I +C+ WWRPNFE
Sbjct: 96 LLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQD-GVLQDWVIDDCIGNWWRPNFE 154
Query: 170 TIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNV 220
YPY P HITKPKE KKLFLV L E+ FAVPKN KL+A PLFELYDN
Sbjct: 155 PPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNA 205
>sp|Q3ZCA2|CPSF5_BOVIN Cleavage and polyadenylation specificity factor subunit 5 OS=Bos
taurus GN=NUDT21 PE=2 SV=1
Length = 227
Score = 221 bits (563), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 105/171 (61%), Positives = 125/171 (73%), Gaps = 1/171 (0%)
Query: 50 VVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHIL 109
+N YPL++YTFGTKEP EKD+SVA R RM+ + K GMR +VE +L+V EH PH+L
Sbjct: 36 TINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVL 95
Query: 110 LLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWWRPNFE 169
LLQ+G TF KLPGG L PGE+E+EGLKR +T LG ++ DW I +C+ WWRPNFE
Sbjct: 96 LLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQD-GVLQDWVIDDCIGNWWRPNFE 154
Query: 170 TIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNV 220
YPY P HITKPKE KKLFLV L E+ FAVPKN KL+A PLFELYDN
Sbjct: 155 PPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNA 205
>sp|Q6DJE4|CPSF5_XENLA Cleavage and polyadenylation specificity factor subunit 5
OS=Xenopus laevis GN=cpsf5 PE=2 SV=1
Length = 227
Score = 220 bits (560), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 105/171 (61%), Positives = 124/171 (72%), Gaps = 1/171 (0%)
Query: 50 VVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHIL 109
+N YPL++YTFGTKEP EKD+SVA R RM+ + K GMR +VE +L+V EH PH+L
Sbjct: 36 TINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVL 95
Query: 110 LLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWWRPNFE 169
LLQ+G TF KLPGG L PGE+E+EGLKR +T LG + DW I +C+ WWRPNFE
Sbjct: 96 LLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQD-GVQQDWVIDDCIGNWWRPNFE 154
Query: 170 TIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNV 220
YPY P HITKPKE KKLFLV L E+ FAVPKN KL+A PLFELYDN
Sbjct: 155 PPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNA 205
>sp|Q7T3C6|CPSF5_DANRE Cleavage and polyadenylation specificity factor subunit 5 OS=Danio
rerio GN=cpsf5 PE=2 SV=1
Length = 228
Score = 219 bits (559), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 105/171 (61%), Positives = 124/171 (72%), Gaps = 1/171 (0%)
Query: 50 VVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHIL 109
+N YPL++YTFGTKEP EKD+SVA R RM+ + K GMR +VE +L+V EH PH+L
Sbjct: 37 TINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFEKIGMRRTVEGVLIVHEHRLPHVL 96
Query: 110 LLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWWRPNFE 169
LLQ+G TF KLPGG L PGE+E+EGLKR +T LG + DW I +C+ WWRPNFE
Sbjct: 97 LLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQD-GVKQDWVIDDCIGNWWRPNFE 155
Query: 170 TIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNV 220
YPY P HITKPKE KKLFLV L E+ FAVPKN KL+A PLFELYDN
Sbjct: 156 PPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNA 206
>sp|Q55E68|CPSF5_DICDI Cleavage and polyadenylation specificity factor subunit 5
OS=Dictyostelium discoideum GN=cpsf5 PE=3 SV=1
Length = 200
Score = 186 bits (472), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 94/170 (55%), Positives = 125/170 (73%), Gaps = 3/170 (1%)
Query: 57 SSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILLLQIGNT 116
+SY+FG +E K ++ S+ +LAR+K +Y KEG+R +VE I+++ +H HPHILLLQ N
Sbjct: 13 TSYSFGKEEKKEKEQ-SLTSKLARLKDSYEKEGLRKAVEGIIIIHDHGHPHILLLQDNNY 71
Query: 117 FCKLPGGRLKPGENEIEGLKRKLTSKLG-ANSPALVPDWQIGECVAIWWRPNFETIMYPY 175
F KLPGG+LKPGENEI+GL RKLT KL +P W+IG+ V+ WWRPNFE ++PY
Sbjct: 72 F-KLPGGKLKPGENEIDGLIRKLTKKLSPTGTPVSDAPWEIGDHVSTWWRPNFEPSLFPY 130
Query: 176 CPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQIWAS 225
P HITKPKECKKLF+V L E+ FAV NL L+AV L+E+Y+N Q + +
Sbjct: 131 IPSHITKPKECKKLFVVTLPEKCKFAVSNNLSLIAVSLYEIYNNSQRYGA 180
>sp|Q00174|LAMA_DROME Laminin subunit alpha OS=Drosophila melanogaster GN=LanA PE=1 SV=2
Length = 3712
Score = 32.3 bits (72), Expect = 4.1, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 3 KTPLETRLL-TKEQLRFKGEKQRPVDSLFLNREREREREKESKMVTSPVVNTYPLSSYTF 61
KTP +T+LL T+ L P L + +K + V +VN YP+ +
Sbjct: 2686 KTPEKTKLLATRTNLSTYFRTTEPSGFLLYLGNDNKTAQKNNDFVAVEIVNGYPILTIDL 2745
Query: 62 GTKEPKMEKDTSVAD 76
G ++ D VAD
Sbjct: 2746 GNGPERITSDKYVAD 2760
>sp|O06558|MUTT2_MYCTU Putative 8-oxo-dGTP diphosphatase 2 OS=Mycobacterium tuberculosis
GN=mutT2 PE=3 SV=1
Length = 141
Score = 32.0 bits (71), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 119 KLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWWRPNFETIMYPY 175
+LPGG++ GE E L R+L +LG L ++G+ +A+ N T + Y
Sbjct: 33 ELPGGKVAAGETERAALARELAEELGLEVADLAVGDRVGDDIAL----NGTTTLRAY 85
>sp|Q6ZVK8|NUD18_HUMAN 8-oxo-dGDP phosphatase NUDT18 OS=Homo sapiens GN=NUDT18 PE=1 SV=3
Length = 323
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 108 ILLLQIGNTFCK----LPGGRLKPGENEIEGLKRKLTSKLG 144
+LL+Q C+ LP GR++PGE +E L+R++ + G
Sbjct: 57 VLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAG 97
>sp|P96590|MUTT_BACSU Putative 8-oxo-dGTP diphosphatase OS=Bacillus subtilis (strain 168)
GN=mutT PE=3 SV=1
Length = 149
Score = 31.2 bits (69), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 17/75 (22%)
Query: 95 EAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDW 154
+ ILLV+ + P LPGGR+ PGE+ E R++ + G N+
Sbjct: 15 QQILLVKRKDVP----------LWDLPGGRVDPGESAEEAAVREILEETGYNAA------ 58
Query: 155 QIGECVAIWWRPNFE 169
+ + ++ RP F+
Sbjct: 59 -LSAKIGVYQRPKFQ 72
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,112,247
Number of Sequences: 539616
Number of extensions: 4446879
Number of successful extensions: 11198
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 11166
Number of HSP's gapped (non-prelim): 26
length of query: 282
length of database: 191,569,459
effective HSP length: 116
effective length of query: 166
effective length of database: 128,974,003
effective search space: 21409684498
effective search space used: 21409684498
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)