Query 039177
Match_columns 453
No_of_seqs 539 out of 2595
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 07:04:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039177.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039177hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.7E-59 3.7E-64 472.4 50.9 386 61-451 453-880 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 3.2E-59 7E-64 470.3 49.8 404 18-428 362-801 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 5.5E-56 1.2E-60 443.9 41.7 361 60-431 102-477 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 1.9E-55 4.1E-60 450.2 42.7 394 21-427 217-636 (857)
5 PLN03077 Protein ECB2; Provisi 100.0 2.1E-55 4.5E-60 449.9 42.8 375 63-449 170-624 (857)
6 PLN03081 pentatricopeptide (PP 100.0 3.6E-54 7.8E-59 430.8 38.8 396 19-432 80-510 (697)
7 TIGR02917 PEP_TPR_lipo putativ 99.9 2.9E-20 6.2E-25 194.3 45.9 348 79-440 532-897 (899)
8 PRK11788 tetratricopeptide rep 99.9 5.6E-21 1.2E-25 179.8 35.0 302 88-417 43-354 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 5.3E-20 1.1E-24 192.3 44.5 322 76-409 461-798 (899)
10 PRK11788 tetratricopeptide rep 99.9 2.9E-19 6.4E-24 168.2 35.0 296 123-445 42-349 (389)
11 PRK15174 Vi polysaccharide exp 99.8 1.8E-16 3.8E-21 157.0 41.9 315 84-410 46-381 (656)
12 KOG4626 O-linked N-acetylgluco 99.8 2.2E-17 4.7E-22 150.2 30.3 324 78-416 114-489 (966)
13 TIGR00990 3a0801s09 mitochondr 99.8 6E-16 1.3E-20 153.5 40.8 63 75-139 155-217 (615)
14 TIGR00990 3a0801s09 mitochondr 99.8 7.2E-15 1.6E-19 145.8 43.8 348 83-441 130-569 (615)
15 PRK15174 Vi polysaccharide exp 99.8 3.9E-15 8.5E-20 147.4 39.3 320 79-408 75-418 (656)
16 PRK11447 cellulose synthase su 99.8 3.4E-14 7.4E-19 150.3 45.5 314 87-410 276-700 (1157)
17 KOG4422 Uncharacterized conser 99.7 2.6E-14 5.7E-19 124.9 32.2 318 116-435 207-580 (625)
18 PRK10049 pgaA outer membrane p 99.7 1.7E-13 3.7E-18 138.7 42.4 357 79-448 48-461 (765)
19 PRK11447 cellulose synthase su 99.7 2.2E-13 4.8E-18 144.2 44.6 353 79-446 384-780 (1157)
20 PRK10049 pgaA outer membrane p 99.7 1.1E-12 2.5E-17 132.8 42.7 333 78-421 81-465 (765)
21 PRK14574 hmsH outer membrane p 99.7 8.8E-12 1.9E-16 124.4 44.2 324 85-418 73-485 (822)
22 KOG4422 Uncharacterized conser 99.7 2.3E-12 5E-17 113.0 34.1 291 82-380 118-467 (625)
23 PRK09782 bacteriophage N4 rece 99.7 5.7E-12 1.2E-16 128.3 42.1 324 79-416 375-710 (987)
24 KOG4626 O-linked N-acetylgluco 99.7 1.5E-13 3.2E-18 125.6 27.0 290 113-415 113-454 (966)
25 PRK14574 hmsH outer membrane p 99.6 4.2E-11 9.2E-16 119.6 42.5 327 87-420 109-521 (822)
26 PRK10747 putative protoheme IX 99.6 1.9E-11 4.2E-16 114.3 33.4 283 93-409 97-389 (398)
27 TIGR00540 hemY_coli hemY prote 99.6 3.1E-11 6.7E-16 113.6 34.3 288 92-408 96-397 (409)
28 PRK09782 bacteriophage N4 rece 99.6 8.7E-11 1.9E-15 119.8 38.6 290 93-417 451-745 (987)
29 PF13429 TPR_15: Tetratricopep 99.6 3.3E-14 7.1E-19 127.0 12.2 220 178-407 53-274 (280)
30 PF13429 TPR_15: Tetratricopep 99.6 3.9E-14 8.5E-19 126.5 12.5 243 174-426 13-258 (280)
31 KOG1126 DNA-binding cell divis 99.6 5.3E-12 1.1E-16 116.9 25.9 286 94-413 333-623 (638)
32 COG2956 Predicted N-acetylgluc 99.5 8.2E-11 1.8E-15 99.8 29.5 252 169-432 69-331 (389)
33 KOG2003 TPR repeat-containing 99.5 4.4E-11 9.6E-16 105.8 28.0 333 82-426 278-704 (840)
34 PRK10747 putative protoheme IX 99.5 1.8E-10 3.8E-15 107.9 33.6 272 147-433 97-378 (398)
35 KOG1155 Anaphase-promoting com 99.5 7.8E-11 1.7E-15 104.6 28.6 292 88-408 235-534 (559)
36 KOG1155 Anaphase-promoting com 99.5 2.6E-10 5.6E-15 101.4 31.8 164 242-409 331-494 (559)
37 TIGR00540 hemY_coli hemY prote 99.5 6.9E-10 1.5E-14 104.5 34.5 290 146-443 96-399 (409)
38 COG3071 HemY Uncharacterized e 99.5 3.4E-09 7.3E-14 92.9 34.1 294 86-410 88-390 (400)
39 KOG2076 RNA polymerase III tra 99.4 2E-09 4.3E-14 103.4 35.2 314 88-408 147-510 (895)
40 KOG4318 Bicoid mRNA stability 99.4 2.3E-11 5E-16 115.8 22.1 89 66-185 11-99 (1088)
41 KOG2002 TPR-containing nuclear 99.4 6.8E-10 1.5E-14 107.3 32.0 344 80-431 307-731 (1018)
42 COG2956 Predicted N-acetylgluc 99.4 5E-10 1.1E-14 95.1 27.5 223 188-416 52-284 (389)
43 TIGR02521 type_IV_pilW type IV 99.4 2.7E-10 5.9E-15 98.9 26.8 202 204-409 29-231 (234)
44 KOG1126 DNA-binding cell divis 99.4 1E-10 2.2E-15 108.5 24.5 260 150-425 335-599 (638)
45 PRK12370 invasion protein regu 99.4 7.7E-10 1.7E-14 108.2 30.5 266 168-442 255-534 (553)
46 KOG4318 Bicoid mRNA stability 99.4 2.8E-11 6E-16 115.3 19.1 251 156-428 12-283 (1088)
47 KOG0547 Translocase of outer m 99.4 2.2E-09 4.7E-14 96.2 28.5 215 188-408 343-564 (606)
48 PRK12370 invasion protein regu 99.4 7.8E-10 1.7E-14 108.1 28.5 250 147-410 274-535 (553)
49 COG3071 HemY Uncharacterized e 99.4 1.6E-08 3.4E-13 88.8 32.9 302 137-451 87-397 (400)
50 PF13041 PPR_2: PPR repeat fam 99.4 1.6E-12 3.4E-17 82.0 6.3 49 204-252 1-49 (50)
51 PF13041 PPR_2: PPR repeat fam 99.4 2.4E-12 5.2E-17 81.2 6.7 47 310-356 2-48 (50)
52 TIGR02521 type_IV_pilW type IV 99.3 2E-09 4.4E-14 93.3 26.2 201 168-374 30-231 (234)
53 KOG0495 HAT repeat protein [RN 99.3 2.6E-07 5.7E-12 86.1 38.9 351 68-432 467-867 (913)
54 PF12569 NARP1: NMDA receptor- 99.3 2.2E-08 4.8E-13 95.0 32.6 294 86-409 10-333 (517)
55 KOG2002 TPR-containing nuclear 99.3 7.3E-09 1.6E-13 100.3 28.9 325 79-423 413-758 (1018)
56 KOG1129 TPR repeat-containing 99.3 7.1E-10 1.5E-14 94.3 19.6 234 173-416 227-462 (478)
57 KOG2003 TPR repeat-containing 99.3 5.4E-09 1.2E-13 92.9 25.5 178 254-437 503-680 (840)
58 KOG2076 RNA polymerase III tra 99.3 4.3E-08 9.3E-13 94.4 33.2 328 76-409 169-554 (895)
59 KOG1173 Anaphase-promoting com 99.3 1.2E-08 2.6E-13 93.2 27.4 270 148-428 258-534 (611)
60 KOG1915 Cell cycle control pro 99.2 5.6E-08 1.2E-12 87.1 29.2 147 80-234 73-235 (677)
61 KOG1129 TPR repeat-containing 99.2 1.4E-09 2.9E-14 92.7 17.7 230 120-375 227-458 (478)
62 KOG1840 Kinesin light chain [C 99.2 1.8E-08 4E-13 94.4 25.6 245 80-337 199-476 (508)
63 KOG0495 HAT repeat protein [RN 99.2 3.2E-06 6.9E-11 79.1 37.8 312 86-409 412-781 (913)
64 KOG1840 Kinesin light chain [C 99.2 6.9E-08 1.5E-12 90.6 27.7 237 170-408 200-477 (508)
65 COG3063 PilF Tfp pilus assembl 99.1 1.1E-07 2.5E-12 77.4 23.8 209 208-422 37-246 (250)
66 KOG1174 Anaphase-promoting com 99.1 7.6E-07 1.7E-11 78.7 28.8 306 76-415 190-503 (564)
67 PF12569 NARP1: NMDA receptor- 99.1 8.2E-07 1.8E-11 84.5 31.5 262 122-414 10-295 (517)
68 PRK11189 lipoprotein NlpI; Pro 99.1 3.4E-07 7.4E-12 82.1 27.7 195 171-376 66-266 (296)
69 PRK11189 lipoprotein NlpI; Pro 99.1 2.4E-07 5.3E-12 83.1 26.5 225 188-422 43-276 (296)
70 KOG4162 Predicted calmodulin-b 99.0 6.2E-06 1.3E-10 78.7 33.4 359 69-433 312-771 (799)
71 KOG1173 Anaphase-promoting com 99.0 1.1E-06 2.3E-11 80.9 27.0 285 76-391 240-532 (611)
72 cd05804 StaR_like StaR_like; a 99.0 3.8E-06 8.2E-11 78.1 31.3 304 81-409 7-335 (355)
73 COG3063 PilF Tfp pilus assembl 99.0 9.2E-07 2E-11 72.2 22.9 199 243-445 37-238 (250)
74 KOG1915 Cell cycle control pro 99.0 2.3E-05 4.9E-10 70.9 33.2 347 62-422 158-546 (677)
75 KOG0547 Translocase of outer m 98.9 4.8E-07 1E-11 81.6 21.0 219 147-375 339-566 (606)
76 KOG4340 Uncharacterized conser 98.9 1.7E-06 3.7E-11 73.3 22.7 279 80-372 10-336 (459)
77 KOG2047 mRNA splicing factor [ 98.9 3.4E-05 7.4E-10 72.4 33.0 289 75-377 133-508 (835)
78 PF04733 Coatomer_E: Coatomer 98.9 1.2E-07 2.7E-12 83.8 16.2 228 169-415 35-268 (290)
79 KOG2376 Signal recognition par 98.9 3.7E-05 8E-10 71.4 31.8 115 312-429 377-505 (652)
80 KOG3785 Uncharacterized conser 98.8 2.7E-05 6E-10 67.8 28.5 59 86-146 63-121 (557)
81 PF04733 Coatomer_E: Coatomer 98.8 1.6E-07 3.5E-12 83.1 15.5 251 88-375 9-265 (290)
82 PF12854 PPR_1: PPR repeat 98.8 8.8E-09 1.9E-13 58.2 4.0 29 343-371 4-32 (34)
83 PF12854 PPR_1: PPR repeat 98.8 1.4E-08 3.1E-13 57.4 4.0 34 375-408 1-34 (34)
84 KOG1914 mRNA cleavage and poly 98.7 0.00016 3.4E-09 66.7 31.3 151 257-409 347-500 (656)
85 KOG1128 Uncharacterized conser 98.7 2.5E-06 5.5E-11 80.8 19.6 221 113-375 395-616 (777)
86 cd05804 StaR_like StaR_like; a 98.7 0.00012 2.6E-09 68.0 30.9 270 116-409 6-292 (355)
87 KOG2047 mRNA splicing factor [ 98.7 0.00022 4.8E-09 67.1 30.9 325 80-412 102-508 (835)
88 KOG1070 rRNA processing protei 98.7 8.7E-06 1.9E-10 82.5 23.4 209 203-415 1455-1668(1710)
89 KOG3081 Vesicle coat complex C 98.7 6.8E-05 1.5E-09 62.9 24.6 172 192-374 94-270 (299)
90 KOG0985 Vesicle coat protein c 98.7 8.7E-05 1.9E-09 73.2 29.0 290 78-408 982-1306(1666)
91 PLN02789 farnesyltranstransfer 98.6 7.4E-05 1.6E-09 67.2 26.7 200 188-393 54-267 (320)
92 KOG1174 Anaphase-promoting com 98.6 8.7E-05 1.9E-09 66.1 26.0 271 76-376 228-501 (564)
93 KOG1070 rRNA processing protei 98.6 3.9E-05 8.5E-10 78.0 26.7 208 113-343 1455-1666(1710)
94 KOG1156 N-terminal acetyltrans 98.6 0.00047 1E-08 65.0 32.3 322 78-412 73-470 (700)
95 KOG1125 TPR repeat-containing 98.6 5.1E-06 1.1E-10 76.8 18.9 222 179-409 295-526 (579)
96 KOG4340 Uncharacterized conser 98.6 8E-06 1.7E-10 69.3 18.0 92 172-268 13-105 (459)
97 PRK04841 transcriptional regul 98.6 0.00027 6E-09 74.5 33.9 238 171-410 493-760 (903)
98 TIGR03302 OM_YfiO outer membra 98.6 2.3E-05 4.9E-10 68.1 21.0 186 203-410 30-232 (235)
99 TIGR03302 OM_YfiO outer membra 98.6 1.8E-05 4E-10 68.7 20.4 186 167-375 31-232 (235)
100 PLN02789 farnesyltranstransfer 98.6 0.00014 3.1E-09 65.4 26.0 216 83-323 40-267 (320)
101 PRK14720 transcript cleavage f 98.6 5.4E-05 1.2E-09 76.0 25.3 220 79-357 30-268 (906)
102 PRK10370 formate-dependent nit 98.6 3.4E-05 7.5E-10 64.5 20.6 149 213-376 23-174 (198)
103 PRK10370 formate-dependent nit 98.5 3.6E-05 7.9E-10 64.3 20.0 155 248-418 23-180 (198)
104 KOG3616 Selective LIM binding 98.5 7.9E-05 1.7E-09 71.0 23.6 57 85-144 620-676 (1636)
105 KOG1128 Uncharacterized conser 98.5 4.9E-05 1.1E-09 72.4 21.5 213 174-409 403-615 (777)
106 PRK15359 type III secretion sy 98.5 1.7E-05 3.7E-10 62.6 15.4 101 316-420 29-129 (144)
107 KOG3785 Uncharacterized conser 98.4 0.0005 1.1E-08 60.2 25.0 207 211-426 290-504 (557)
108 KOG3617 WD40 and TPR repeat-co 98.4 0.00025 5.5E-09 68.6 25.0 48 90-144 738-785 (1416)
109 PRK14720 transcript cleavage f 98.4 0.00029 6.3E-09 70.9 26.7 135 168-322 115-268 (906)
110 KOG1125 TPR repeat-containing 98.4 3.2E-05 6.8E-10 71.7 18.2 198 213-417 292-498 (579)
111 PRK04841 transcriptional regul 98.4 0.0021 4.5E-08 67.9 34.7 283 125-409 383-719 (903)
112 COG5010 TadD Flp pilus assembl 98.4 5.2E-05 1.1E-09 63.5 17.6 89 282-372 106-194 (257)
113 COG5010 TadD Flp pilus assembl 98.4 0.00015 3.2E-09 60.9 20.0 165 205-374 66-230 (257)
114 PRK15179 Vi polysaccharide bio 98.4 0.00028 6E-09 70.2 25.2 162 238-410 83-245 (694)
115 KOG0624 dsRNA-activated protei 98.4 0.0014 3E-08 57.3 30.9 283 85-376 43-371 (504)
116 PRK15179 Vi polysaccharide bio 98.4 0.00042 9.1E-09 69.0 25.9 164 202-375 82-245 (694)
117 PRK15359 type III secretion sy 98.3 0.0001 2.2E-09 58.3 17.0 91 212-304 30-120 (144)
118 TIGR00756 PPR pentatricopeptid 98.3 1.3E-06 2.9E-11 50.1 4.5 33 383-415 2-34 (35)
119 KOG3081 Vesicle coat complex C 98.3 0.0016 3.4E-08 55.0 25.6 250 168-444 40-295 (299)
120 COG4783 Putative Zn-dependent 98.3 0.00058 1.3E-08 62.5 22.6 182 204-410 272-454 (484)
121 KOG3060 Uncharacterized conser 98.3 0.0016 3.5E-08 54.5 23.5 186 148-340 26-220 (289)
122 KOG0624 dsRNA-activated protei 98.3 0.0023 4.9E-08 56.0 27.0 286 115-409 37-369 (504)
123 KOG0548 Molecular co-chaperone 98.3 0.0035 7.6E-08 58.1 28.7 107 318-428 365-471 (539)
124 TIGR02552 LcrH_SycD type III s 98.2 5.7E-05 1.2E-09 59.2 14.0 104 313-420 19-122 (135)
125 TIGR00756 PPR pentatricopeptid 98.2 2E-06 4.4E-11 49.3 4.2 33 208-240 2-34 (35)
126 KOG0985 Vesicle coat protein c 98.2 0.0035 7.5E-08 62.5 28.1 276 101-433 968-1266(1666)
127 KOG1914 mRNA cleavage and poly 98.2 0.0047 1E-07 57.4 30.7 365 76-445 16-503 (656)
128 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 0.00012 2.6E-09 67.3 17.1 121 246-372 174-294 (395)
129 PF13812 PPR_3: Pentatricopept 98.2 2.8E-06 6E-11 48.3 4.3 32 383-414 3-34 (34)
130 KOG2376 Signal recognition par 98.2 0.0061 1.3E-07 57.3 30.2 162 243-408 341-518 (652)
131 TIGR02552 LcrH_SycD type III s 98.2 0.00014 3E-09 57.0 14.8 95 208-304 19-113 (135)
132 PF10037 MRP-S27: Mitochondria 98.2 4.1E-05 8.9E-10 70.6 12.8 125 235-359 60-186 (429)
133 KOG1156 N-terminal acetyltrans 98.1 0.0079 1.7E-07 57.2 30.0 305 89-425 16-332 (700)
134 PF13812 PPR_3: Pentatricopept 98.1 4.3E-06 9.3E-11 47.5 4.2 32 208-239 3-34 (34)
135 COG4783 Putative Zn-dependent 98.1 0.0028 6.1E-08 58.2 23.3 147 207-375 307-454 (484)
136 KOG3617 WD40 and TPR repeat-co 98.1 0.0026 5.6E-08 62.0 23.9 150 79-234 756-940 (1416)
137 PF10037 MRP-S27: Mitochondria 98.1 7.9E-05 1.7E-09 68.8 13.5 124 201-324 61-186 (429)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00031 6.7E-09 64.6 16.5 125 209-340 172-297 (395)
139 KOG4162 Predicted calmodulin-b 98.0 0.017 3.7E-07 56.2 34.1 307 111-424 318-725 (799)
140 KOG0548 Molecular co-chaperone 98.0 0.013 2.9E-07 54.4 28.2 309 88-409 10-420 (539)
141 PF08579 RPM2: Mitochondrial r 98.0 0.00014 3.1E-09 52.6 10.1 75 283-357 32-115 (120)
142 PF09976 TPR_21: Tetratricopep 98.0 0.00096 2.1E-08 52.9 16.1 86 284-371 56-143 (145)
143 KOG3060 Uncharacterized conser 98.0 0.0077 1.7E-07 50.6 23.8 185 187-376 28-221 (289)
144 PF09976 TPR_21: Tetratricopep 98.0 0.00059 1.3E-08 54.1 14.8 128 277-407 13-144 (145)
145 KOG3616 Selective LIM binding 97.9 0.0014 3E-08 63.0 18.6 77 285-372 741-817 (1636)
146 PF01535 PPR: PPR repeat; Int 97.9 1.3E-05 2.9E-10 44.3 3.6 29 383-411 2-30 (31)
147 KOG1127 TPR repeat-containing 97.9 0.0091 2E-07 59.6 24.6 148 81-234 493-658 (1238)
148 PF01535 PPR: PPR repeat; Int 97.9 1.7E-05 3.7E-10 43.9 3.5 29 208-236 2-30 (31)
149 PF08579 RPM2: Mitochondrial r 97.9 0.00033 7.2E-09 50.8 10.6 74 317-390 31-113 (120)
150 PF04840 Vps16_C: Vps16, C-ter 97.8 0.021 4.5E-07 51.5 26.5 133 276-434 177-309 (319)
151 PRK10866 outer membrane biogen 97.8 0.0084 1.8E-07 51.9 20.7 183 206-408 32-239 (243)
152 cd00189 TPR Tetratricopeptide 97.8 0.00053 1.1E-08 49.3 11.6 90 317-408 6-95 (100)
153 PLN03088 SGT1, suppressor of 97.8 0.00072 1.6E-08 62.3 14.0 87 286-374 12-98 (356)
154 KOG2053 Mitochondrial inherita 97.7 0.056 1.2E-06 53.6 31.4 199 172-376 44-256 (932)
155 KOG1127 TPR repeat-containing 97.7 0.015 3.2E-07 58.2 22.6 180 188-374 475-658 (1238)
156 PF06239 ECSIT: Evolutionarily 97.7 0.0013 2.7E-08 54.1 13.0 105 273-396 44-153 (228)
157 PF06239 ECSIT: Evolutionarily 97.7 0.00091 2E-08 54.9 12.2 115 226-361 34-153 (228)
158 cd00189 TPR Tetratricopeptide 97.7 0.001 2.2E-08 47.7 11.5 92 210-303 4-95 (100)
159 KOG2041 WD40 repeat protein [G 97.7 0.049 1.1E-06 52.5 24.5 170 240-422 851-1063(1189)
160 PF05843 Suf: Suppressor of fo 97.7 0.0012 2.6E-08 58.7 13.5 132 242-375 2-136 (280)
161 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0029 6.3E-08 48.0 13.8 12 324-335 89-100 (119)
162 PF05843 Suf: Suppressor of fo 97.6 0.0016 3.5E-08 57.9 13.8 144 207-356 2-150 (280)
163 PF14938 SNAP: Soluble NSF att 97.6 0.018 3.9E-07 51.4 20.2 93 282-375 120-225 (282)
164 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0024 5.2E-08 48.5 12.6 95 315-409 6-104 (119)
165 PF12895 Apc3: Anaphase-promot 97.6 0.00018 4E-09 50.9 5.5 20 352-371 31-50 (84)
166 PRK15363 pathogenicity island 97.5 0.0076 1.6E-07 47.3 14.4 97 206-304 35-131 (157)
167 PF12895 Apc3: Anaphase-promot 97.5 0.00019 4.2E-09 50.7 5.2 81 289-371 2-83 (84)
168 PRK15363 pathogenicity island 97.5 0.0029 6.4E-08 49.5 11.9 93 281-375 40-132 (157)
169 PLN03088 SGT1, suppressor of 97.5 0.0038 8.3E-08 57.6 14.8 89 214-304 10-98 (356)
170 PRK02603 photosystem I assembl 97.5 0.01 2.2E-07 48.6 15.7 62 208-269 37-100 (172)
171 PF14938 SNAP: Soluble NSF att 97.5 0.029 6.3E-07 50.0 19.8 129 244-372 117-263 (282)
172 PRK02603 photosystem I assembl 97.5 0.0073 1.6E-07 49.4 14.7 89 170-261 36-126 (172)
173 PF13525 YfiO: Outer membrane 97.5 0.022 4.8E-07 48.0 17.8 180 209-401 8-198 (203)
174 KOG0553 TPR repeat-containing 97.5 0.0016 3.4E-08 56.1 10.5 100 285-388 90-189 (304)
175 KOG2796 Uncharacterized conser 97.5 0.043 9.3E-07 46.5 18.5 140 280-422 181-325 (366)
176 CHL00033 ycf3 photosystem I as 97.4 0.0048 1E-07 50.3 12.8 61 280-340 39-101 (168)
177 CHL00033 ycf3 photosystem I as 97.3 0.012 2.5E-07 48.0 13.8 96 311-407 35-139 (168)
178 KOG2053 Mitochondrial inherita 97.3 0.23 5.1E-06 49.5 32.0 53 168-224 76-128 (932)
179 PRK10153 DNA-binding transcrip 97.3 0.028 6.1E-07 54.4 18.1 143 272-420 333-490 (517)
180 PF12688 TPR_5: Tetratrico pep 97.3 0.031 6.8E-07 42.2 14.5 104 212-321 7-116 (120)
181 PRK10153 DNA-binding transcrip 97.2 0.046 1E-06 53.0 18.7 35 202-236 333-372 (517)
182 KOG1538 Uncharacterized conser 97.2 0.035 7.5E-07 53.0 16.5 228 75-339 551-801 (1081)
183 PF14559 TPR_19: Tetratricopep 97.2 0.0015 3.1E-08 44.0 5.9 50 324-374 4-53 (68)
184 PF12688 TPR_5: Tetratrico pep 97.2 0.033 7E-07 42.1 13.5 89 284-372 9-101 (120)
185 PF14559 TPR_19: Tetratricopep 97.2 0.0025 5.4E-08 42.8 7.0 53 91-145 2-54 (68)
186 KOG0553 TPR repeat-containing 97.1 0.016 3.5E-07 50.0 13.1 102 214-319 89-190 (304)
187 COG4700 Uncharacterized protei 97.1 0.11 2.3E-06 41.8 18.3 125 273-401 86-213 (251)
188 PF13432 TPR_16: Tetratricopep 97.1 0.0035 7.6E-08 41.6 6.9 51 321-372 7-57 (65)
189 PF13432 TPR_16: Tetratricopep 97.0 0.0041 8.8E-08 41.3 7.2 56 213-269 4-59 (65)
190 COG4235 Cytochrome c biogenesi 97.0 0.052 1.1E-06 47.2 15.2 111 310-424 155-268 (287)
191 KOG2041 WD40 repeat protein [G 97.0 0.38 8.2E-06 46.8 21.4 221 113-374 689-951 (1189)
192 PF13414 TPR_11: TPR repeat; P 97.0 0.0053 1.1E-07 41.3 7.2 58 314-372 6-64 (69)
193 PF12921 ATP13: Mitochondrial 96.9 0.028 6.1E-07 42.8 11.6 51 307-357 48-99 (126)
194 PF12921 ATP13: Mitochondrial 96.9 0.016 3.5E-07 44.1 10.3 96 310-425 1-97 (126)
195 PRK10866 outer membrane biogen 96.9 0.26 5.6E-06 42.8 22.4 175 177-373 40-239 (243)
196 PF03704 BTAD: Bacterial trans 96.9 0.0083 1.8E-07 47.6 8.7 57 315-372 66-122 (146)
197 PF13414 TPR_11: TPR repeat; P 96.8 0.0065 1.4E-07 40.9 6.8 61 207-268 4-65 (69)
198 KOG2796 Uncharacterized conser 96.7 0.32 6.9E-06 41.5 20.9 131 244-375 180-315 (366)
199 PF03704 BTAD: Bacterial trans 96.7 0.015 3.3E-07 46.1 8.9 71 348-419 64-139 (146)
200 PRK10803 tol-pal system protei 96.7 0.057 1.2E-06 47.3 13.1 96 278-375 145-246 (263)
201 PF13281 DUF4071: Domain of un 96.7 0.5 1.1E-05 43.3 19.4 77 210-286 145-227 (374)
202 PF13525 YfiO: Outer membrane 96.7 0.28 6.1E-06 41.3 17.0 174 178-366 14-198 (203)
203 COG5107 RNA14 Pre-mRNA 3'-end 96.7 0.53 1.2E-05 43.4 27.7 145 276-426 397-545 (660)
204 PF13281 DUF4071: Domain of un 96.6 0.55 1.2E-05 43.0 20.1 81 169-251 141-227 (374)
205 PRK10803 tol-pal system protei 96.6 0.054 1.2E-06 47.4 12.5 94 243-340 145-246 (263)
206 PF04840 Vps16_C: Vps16, C-ter 96.6 0.53 1.2E-05 42.6 25.4 111 242-372 178-288 (319)
207 PRK15331 chaperone protein Sic 96.6 0.1 2.3E-06 41.3 12.6 87 286-374 47-133 (165)
208 COG4235 Cytochrome c biogenesi 96.5 0.35 7.5E-06 42.3 16.4 102 273-376 153-257 (287)
209 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.16 3.6E-06 47.1 15.3 65 77-143 72-139 (453)
210 PF13371 TPR_9: Tetratricopept 96.4 0.028 6E-07 38.2 7.7 54 215-269 4-57 (73)
211 PF13170 DUF4003: Protein of u 96.3 0.22 4.9E-06 44.4 14.6 129 257-387 78-223 (297)
212 PF13371 TPR_9: Tetratricopept 96.2 0.025 5.4E-07 38.5 6.7 53 321-374 5-57 (73)
213 KOG1538 Uncharacterized conser 96.2 0.057 1.2E-06 51.6 10.7 83 211-304 752-845 (1081)
214 KOG1920 IkappaB kinase complex 96.2 2 4.3E-05 44.8 21.8 251 113-408 788-1053(1265)
215 KOG3941 Intermediate in Toll s 96.2 0.053 1.1E-06 46.5 9.3 102 238-339 64-187 (406)
216 PF13424 TPR_12: Tetratricopep 96.1 0.022 4.7E-07 39.4 5.9 60 313-372 7-72 (78)
217 smart00299 CLH Clathrin heavy 96.1 0.5 1.1E-05 37.0 14.8 125 280-427 11-136 (140)
218 PF13424 TPR_12: Tetratricopep 96.0 0.029 6.3E-07 38.7 6.3 61 347-407 6-72 (78)
219 PF07035 Mic1: Colon cancer-as 96.0 0.63 1.4E-05 37.3 14.3 125 111-269 24-148 (167)
220 KOG0543 FKBP-type peptidyl-pro 95.9 0.25 5.3E-06 44.9 13.0 83 348-433 259-341 (397)
221 PF09205 DUF1955: Domain of un 95.9 0.51 1.1E-05 35.7 13.2 136 253-413 14-152 (161)
222 smart00299 CLH Clathrin heavy 95.9 0.62 1.3E-05 36.4 16.6 85 210-302 11-95 (140)
223 PRK15331 chaperone protein Sic 95.9 0.55 1.2E-05 37.3 13.3 92 211-304 42-133 (165)
224 COG3118 Thioredoxin domain-con 95.9 1.1 2.4E-05 39.2 16.6 145 213-362 141-288 (304)
225 KOG3941 Intermediate in Toll s 95.9 0.25 5.3E-06 42.6 12.0 89 273-361 64-173 (406)
226 KOG2280 Vacuolar assembly/sort 95.8 2.3 5E-05 42.0 20.4 308 73-406 425-795 (829)
227 KOG2114 Vacuolar assembly/sort 95.7 0.74 1.6E-05 45.8 16.2 51 283-334 404-454 (933)
228 KOG2280 Vacuolar assembly/sort 95.6 2.6 5.6E-05 41.7 25.2 89 310-408 683-771 (829)
229 PF09205 DUF1955: Domain of un 95.6 0.7 1.5E-05 35.0 13.2 140 216-377 12-151 (161)
230 COG4105 ComL DNA uptake lipopr 95.6 1.3 2.8E-05 38.0 20.9 80 208-287 36-117 (254)
231 PLN03098 LPA1 LOW PSII ACCUMUL 95.6 0.32 6.9E-06 45.3 12.6 64 275-340 74-141 (453)
232 KOG1130 Predicted G-alpha GTPa 95.6 0.14 3.1E-06 46.4 9.9 264 126-409 27-343 (639)
233 PF07079 DUF1347: Protein of u 95.5 2 4.4E-05 39.8 30.2 323 84-422 132-531 (549)
234 COG4700 Uncharacterized protei 95.5 1 2.3E-05 36.4 19.1 101 204-304 87-188 (251)
235 COG3898 Uncharacterized membra 95.5 1.9 4.1E-05 39.3 26.9 264 145-425 95-371 (531)
236 PF04053 Coatomer_WDAD: Coatom 95.5 0.52 1.1E-05 44.7 14.1 160 88-302 269-428 (443)
237 KOG1130 Predicted G-alpha GTPa 95.5 0.64 1.4E-05 42.4 13.6 270 88-374 25-343 (639)
238 PF13170 DUF4003: Protein of u 95.3 2.1 4.5E-05 38.3 19.2 128 153-282 81-223 (297)
239 KOG2396 HAT (Half-A-TPR) repea 95.1 3 6.6E-05 39.3 27.3 69 77-146 102-170 (568)
240 PF10300 DUF3808: Protein of u 95.0 2.1 4.4E-05 41.4 17.0 163 244-409 191-375 (468)
241 KOG0543 FKBP-type peptidyl-pro 95.0 1.1 2.4E-05 40.9 13.8 95 312-409 258-354 (397)
242 PF10300 DUF3808: Protein of u 95.0 3.3 7E-05 40.0 18.1 138 118-269 190-333 (468)
243 KOG2610 Uncharacterized conser 94.8 0.93 2E-05 40.2 12.4 155 218-375 115-276 (491)
244 KOG1585 Protein required for f 94.8 0.37 8.1E-06 40.6 9.5 45 116-160 91-136 (308)
245 PF04053 Coatomer_WDAD: Coatom 94.8 0.75 1.6E-05 43.7 12.9 128 209-369 298-425 (443)
246 COG3629 DnrI DNA-binding trans 94.6 0.45 9.7E-06 41.7 10.2 62 312-374 154-215 (280)
247 PF13512 TPR_18: Tetratricopep 94.5 1.7 3.8E-05 33.7 12.2 74 320-393 19-94 (142)
248 KOG4570 Uncharacterized conser 94.5 0.7 1.5E-05 40.6 10.8 99 240-340 63-164 (418)
249 KOG0550 Molecular chaperone (D 94.3 4.2 9.1E-05 37.4 17.6 151 250-409 178-349 (486)
250 PF08631 SPO22: Meiosis protei 94.3 3.7 8E-05 36.5 26.1 62 208-270 86-150 (278)
251 COG3629 DnrI DNA-binding trans 94.2 0.65 1.4E-05 40.7 10.2 78 207-285 154-236 (280)
252 COG5107 RNA14 Pre-mRNA 3'-end 94.2 4.8 0.0001 37.5 23.0 147 240-392 396-546 (660)
253 PF07035 Mic1: Colon cancer-as 94.2 2.4 5.3E-05 34.0 15.1 29 265-293 18-46 (167)
254 KOG2114 Vacuolar assembly/sort 94.1 7.1 0.00015 39.4 17.9 179 118-339 336-518 (933)
255 PF13428 TPR_14: Tetratricopep 93.9 0.24 5.1E-06 29.6 5.2 29 208-236 3-31 (44)
256 PF13428 TPR_14: Tetratricopep 93.9 0.29 6.4E-06 29.2 5.6 24 317-340 7-30 (44)
257 PF04184 ST7: ST7 protein; In 93.7 6.5 0.00014 37.3 16.3 58 316-373 264-322 (539)
258 KOG4555 TPR repeat-containing 93.7 2.3 5.1E-05 32.2 11.6 92 214-306 51-145 (175)
259 COG1729 Uncharacterized protei 93.7 1.5 3.3E-05 37.8 11.4 97 278-375 144-244 (262)
260 PF13512 TPR_18: Tetratricopep 93.6 2.7 5.8E-05 32.7 12.3 77 212-288 16-94 (142)
261 PF08631 SPO22: Meiosis protei 93.6 5 0.00011 35.7 27.1 172 91-276 4-192 (278)
262 COG1729 Uncharacterized protei 93.0 2.2 4.9E-05 36.9 11.4 96 209-305 145-244 (262)
263 PRK11906 transcriptional regul 93.0 6.5 0.00014 37.0 15.0 79 223-304 321-400 (458)
264 KOG0550 Molecular chaperone (D 92.4 9 0.00019 35.4 23.7 268 87-376 56-351 (486)
265 COG3118 Thioredoxin domain-con 92.4 7.3 0.00016 34.3 17.4 149 87-260 141-291 (304)
266 KOG2066 Vacuolar assembly/sort 92.3 14 0.00029 37.2 24.5 93 86-181 362-467 (846)
267 COG0457 NrfG FOG: TPR repeat [ 92.1 6.4 0.00014 33.1 29.2 221 188-410 40-265 (291)
268 PF02284 COX5A: Cytochrome c o 91.9 1.1 2.4E-05 32.1 6.8 62 61-124 26-87 (108)
269 KOG2610 Uncharacterized conser 91.8 6.4 0.00014 35.2 12.6 156 181-340 115-277 (491)
270 PF13929 mRNA_stabil: mRNA sta 91.7 8.9 0.00019 33.7 16.1 98 167-264 162-261 (292)
271 KOG2297 Predicted translation 91.6 9.1 0.0002 33.8 16.9 70 287-366 266-341 (412)
272 PF13176 TPR_7: Tetratricopept 91.5 0.46 1E-05 26.9 3.9 23 209-231 2-24 (36)
273 COG3947 Response regulator con 91.5 9.1 0.0002 33.6 16.8 83 56-141 98-191 (361)
274 cd00923 Cyt_c_Oxidase_Va Cytoc 91.4 1.3 2.8E-05 31.5 6.5 63 60-124 22-84 (103)
275 KOG4555 TPR repeat-containing 91.3 3.8 8.2E-05 31.1 9.3 89 286-376 53-145 (175)
276 PF10602 RPN7: 26S proteasome 91.2 4.7 0.0001 33.0 11.0 61 278-338 38-100 (177)
277 PF07575 Nucleopor_Nup85: Nup8 90.9 18 0.0004 36.0 17.0 146 276-425 372-539 (566)
278 PF13176 TPR_7: Tetratricopept 90.9 0.66 1.4E-05 26.2 4.2 22 350-371 3-24 (36)
279 KOG1941 Acetylcholine receptor 90.9 12 0.00027 33.9 14.7 197 207-406 44-271 (518)
280 PRK09687 putative lyase; Provi 90.8 11 0.00025 33.4 26.4 235 166-427 34-278 (280)
281 KOG4570 Uncharacterized conser 90.7 3.8 8.3E-05 36.2 10.1 104 201-306 59-165 (418)
282 PF09613 HrpB1_HrpK: Bacterial 90.6 7.4 0.00016 30.9 12.0 52 287-340 21-73 (160)
283 COG0457 NrfG FOG: TPR repeat [ 90.1 10 0.00022 31.8 28.3 191 219-410 36-231 (291)
284 KOG1585 Protein required for f 90.1 11 0.00024 32.2 14.9 25 209-233 34-58 (308)
285 KOG0276 Vesicle coat complex C 89.8 4.3 9.3E-05 39.2 10.5 152 91-303 597-748 (794)
286 cd00923 Cyt_c_Oxidase_Va Cytoc 89.7 5.7 0.00012 28.3 8.5 45 364-408 25-69 (103)
287 PRK11906 transcriptional regul 89.6 19 0.00041 34.1 15.8 62 310-372 337-398 (458)
288 COG4649 Uncharacterized protei 89.5 9.7 0.00021 30.7 14.1 23 387-409 173-195 (221)
289 PF10602 RPN7: 26S proteasome 89.3 4.2 9E-05 33.3 9.2 96 312-407 37-139 (177)
290 PF13431 TPR_17: Tetratricopep 89.3 0.71 1.5E-05 25.7 3.3 21 345-365 12-32 (34)
291 COG3947 Response regulator con 88.3 17 0.00037 32.0 16.1 71 348-419 281-356 (361)
292 COG3898 Uncharacterized membra 87.6 23 0.0005 32.7 32.0 294 83-414 85-396 (531)
293 KOG1550 Extracellular protein 87.5 32 0.0007 34.2 19.2 180 222-413 228-429 (552)
294 PF09613 HrpB1_HrpK: Bacterial 87.4 13 0.00028 29.6 13.6 101 319-423 18-119 (160)
295 COG1747 Uncharacterized N-term 87.3 28 0.00061 33.3 22.6 159 243-408 68-232 (711)
296 COG4649 Uncharacterized protei 87.3 14 0.0003 29.8 15.1 135 168-305 58-196 (221)
297 PF13431 TPR_17: Tetratricopep 87.1 1.2 2.6E-05 24.8 3.3 32 103-136 2-33 (34)
298 PF11207 DUF2989: Protein of u 87.0 11 0.00024 31.3 10.0 71 224-295 124-197 (203)
299 PF11207 DUF2989: Protein of u 86.9 8.7 0.00019 31.8 9.4 20 345-364 177-196 (203)
300 PF13374 TPR_10: Tetratricopep 86.3 2.2 4.8E-05 24.6 4.5 25 348-372 4-28 (42)
301 COG4455 ImpE Protein of avirul 86.1 19 0.00042 30.3 12.1 54 318-372 8-61 (273)
302 PF04184 ST7: ST7 protein; In 86.1 33 0.00071 32.8 18.0 74 280-353 263-338 (539)
303 KOG4077 Cytochrome c oxidase, 85.6 4.2 9.2E-05 30.5 6.3 50 60-109 64-113 (149)
304 PF00637 Clathrin: Region in C 85.5 0.38 8.3E-06 37.8 1.0 83 212-301 13-95 (143)
305 PF07079 DUF1347: Protein of u 85.4 33 0.00072 32.3 22.4 284 89-417 15-332 (549)
306 PF00637 Clathrin: Region in C 85.4 0.31 6.7E-06 38.3 0.5 84 282-372 13-96 (143)
307 PF13374 TPR_10: Tetratricopep 85.4 2.1 4.5E-05 24.7 4.1 26 208-233 4-29 (42)
308 KOG1941 Acetylcholine receptor 85.3 29 0.00064 31.6 15.2 231 93-339 19-274 (518)
309 PF02259 FAT: FAT domain; Int 84.9 32 0.00069 31.7 22.8 65 240-304 145-212 (352)
310 PF02259 FAT: FAT domain; Int 84.8 32 0.00069 31.6 17.7 65 345-409 145-212 (352)
311 PF00515 TPR_1: Tetratricopept 84.5 3.5 7.5E-05 22.6 4.5 27 348-374 3-29 (34)
312 PF13762 MNE1: Mitochondrial s 84.0 18 0.0004 28.2 10.3 79 350-428 43-127 (145)
313 PF00515 TPR_1: Tetratricopept 83.9 2.7 5.8E-05 23.0 3.8 27 208-234 3-29 (34)
314 PHA02875 ankyrin repeat protei 83.3 22 0.00048 33.7 12.2 16 154-169 15-30 (413)
315 PF07719 TPR_2: Tetratricopept 83.2 2.2 4.8E-05 23.2 3.3 23 386-408 6-28 (34)
316 COG2909 MalT ATP-dependent tra 83.1 60 0.0013 33.5 25.5 196 215-410 424-647 (894)
317 COG1747 Uncharacterized N-term 82.9 46 0.001 32.0 25.2 180 166-355 63-248 (711)
318 PF02284 COX5A: Cytochrome c o 82.4 16 0.00035 26.4 8.9 47 188-234 27-73 (108)
319 KOG1258 mRNA processing protei 82.1 53 0.0012 32.1 24.4 302 80-410 45-395 (577)
320 PF07719 TPR_2: Tetratricopept 81.2 5.5 0.00012 21.6 4.5 29 347-375 2-30 (34)
321 PF13929 mRNA_stabil: mRNA sta 80.6 41 0.00088 29.8 18.3 115 221-335 143-262 (292)
322 PHA02875 ankyrin repeat protei 79.4 29 0.00063 32.9 11.5 170 155-347 49-231 (413)
323 KOG0276 Vesicle coat complex C 79.4 34 0.00073 33.5 11.2 100 287-407 648-747 (794)
324 COG4105 ComL DNA uptake lipopr 79.3 41 0.00089 29.1 22.3 189 167-374 33-232 (254)
325 COG4455 ImpE Protein of avirul 79.2 20 0.00043 30.2 8.5 60 244-304 4-63 (273)
326 TIGR02561 HrpB1_HrpK type III 78.9 30 0.00064 27.2 12.4 50 288-341 22-74 (153)
327 PF13181 TPR_8: Tetratricopept 78.8 7 0.00015 21.2 4.4 25 349-373 4-28 (34)
328 PF07721 TPR_4: Tetratricopept 78.4 5 0.00011 20.6 3.4 22 119-140 4-25 (26)
329 PF11848 DUF3368: Domain of un 78.1 9.2 0.0002 23.3 5.0 34 391-424 12-45 (48)
330 PF07163 Pex26: Pex26 protein; 77.8 42 0.00092 29.5 10.4 89 246-334 88-181 (309)
331 TIGR03504 FimV_Cterm FimV C-te 77.7 7.1 0.00015 23.3 4.2 20 319-338 7-26 (44)
332 PRK15180 Vi polysaccharide bio 77.6 36 0.00078 32.3 10.6 155 280-439 293-450 (831)
333 COG2976 Uncharacterized protei 77.2 40 0.00087 27.9 12.9 91 319-411 97-189 (207)
334 PF04097 Nic96: Nup93/Nic96; 77.2 86 0.0019 31.7 23.2 43 85-129 116-158 (613)
335 PF13181 TPR_8: Tetratricopept 76.8 7 0.00015 21.2 4.0 27 208-234 3-29 (34)
336 PF07163 Pex26: Pex26 protein; 76.5 39 0.00085 29.7 9.8 90 210-299 87-181 (309)
337 KOG2063 Vacuolar assembly/sort 75.5 92 0.002 32.6 13.8 26 209-234 507-532 (877)
338 TIGR03504 FimV_Cterm FimV C-te 74.8 7.8 0.00017 23.1 3.9 25 352-376 5-29 (44)
339 KOG2297 Predicted translation 74.8 62 0.0014 28.9 17.1 75 247-331 261-341 (412)
340 PRK09687 putative lyase; Provi 74.5 63 0.0014 28.8 28.5 220 78-339 35-262 (280)
341 KOG1586 Protein required for f 74.0 56 0.0012 28.0 15.3 21 357-377 165-185 (288)
342 PF10579 Rapsyn_N: Rapsyn N-te 73.7 14 0.0003 25.3 5.2 18 349-366 46-63 (80)
343 PF13762 MNE1: Mitochondrial s 73.6 42 0.00091 26.3 10.7 49 275-323 78-127 (145)
344 TIGR02561 HrpB1_HrpK type III 72.8 44 0.00096 26.3 12.0 50 219-270 23-73 (153)
345 KOG4077 Cytochrome c oxidase, 72.7 26 0.00056 26.6 6.8 47 329-375 67-113 (149)
346 PRK11619 lytic murein transgly 71.9 1.2E+02 0.0026 30.9 32.5 225 186-416 256-511 (644)
347 PF11838 ERAP1_C: ERAP1-like C 71.7 79 0.0017 28.7 21.9 135 292-431 146-290 (324)
348 cd08819 CARD_MDA5_2 Caspase ac 70.8 34 0.00073 24.0 7.1 13 255-267 50-62 (88)
349 PRK15180 Vi polysaccharide bio 70.7 59 0.0013 31.0 10.2 124 215-342 298-422 (831)
350 KOG1550 Extracellular protein 70.6 1.2E+02 0.0026 30.3 25.8 192 96-307 228-428 (552)
351 COG2976 Uncharacterized protei 70.0 63 0.0014 26.8 14.3 89 283-376 96-189 (207)
352 PF11846 DUF3366: Domain of un 69.7 28 0.00061 28.9 7.7 32 343-374 141-172 (193)
353 cd00280 TRFH Telomeric Repeat 69.5 45 0.00097 27.3 8.0 48 327-374 85-139 (200)
354 PF13174 TPR_6: Tetratricopept 69.5 9.9 0.00021 20.3 3.4 19 390-408 9-27 (33)
355 TIGR02508 type_III_yscG type I 69.4 33 0.00072 24.8 6.5 78 327-411 21-98 (115)
356 PF10579 Rapsyn_N: Rapsyn N-te 69.0 19 0.00041 24.7 5.1 51 353-404 14-66 (80)
357 PF08424 NRDE-2: NRDE-2, neces 67.9 98 0.0021 28.2 17.7 117 294-412 49-185 (321)
358 KOG4648 Uncharacterized conser 67.8 26 0.00057 31.6 7.1 78 284-371 105-183 (536)
359 PF06552 TOM20_plant: Plant sp 67.5 54 0.0012 26.8 8.2 104 96-216 7-123 (186)
360 PRK10564 maltose regulon perip 66.8 13 0.00029 32.9 5.2 35 349-383 260-294 (303)
361 KOG4648 Uncharacterized conser 66.8 44 0.00096 30.3 8.2 92 214-310 105-197 (536)
362 PF11848 DUF3368: Domain of un 66.4 25 0.00055 21.4 5.0 32 357-388 13-44 (48)
363 KOG1920 IkappaB kinase complex 66.2 2E+02 0.0043 31.1 24.4 91 308-408 932-1026(1265)
364 COG2909 MalT ATP-dependent tra 65.8 1.7E+02 0.0038 30.4 24.4 224 181-406 427-684 (894)
365 PF11663 Toxin_YhaV: Toxin wit 65.5 7.2 0.00016 29.8 2.9 30 148-179 109-138 (140)
366 smart00028 TPR Tetratricopepti 65.3 14 0.0003 18.8 3.6 25 384-408 4-28 (34)
367 PF11838 ERAP1_C: ERAP1-like C 65.2 1.1E+02 0.0023 27.8 19.3 109 257-370 146-261 (324)
368 PF10345 Cohesin_load: Cohesin 65.0 1.6E+02 0.0035 29.7 19.8 195 204-408 28-252 (608)
369 cd08819 CARD_MDA5_2 Caspase ac 64.4 47 0.001 23.3 7.6 14 325-338 50-63 (88)
370 COG5159 RPN6 26S proteasome re 64.3 1E+02 0.0022 27.3 11.1 35 386-420 130-168 (421)
371 COG5108 RPO41 Mitochondrial DN 63.5 96 0.0021 31.0 10.4 128 281-418 33-172 (1117)
372 PF14689 SPOB_a: Sensor_kinase 63.4 14 0.00029 24.1 3.6 46 362-409 6-51 (62)
373 PF11846 DUF3366: Domain of un 63.2 45 0.00098 27.6 7.7 55 358-414 120-175 (193)
374 KOG2582 COP9 signalosome, subu 62.5 1.3E+02 0.0028 27.7 15.0 231 167-411 73-346 (422)
375 KOG2063 Vacuolar assembly/sort 62.5 2.1E+02 0.0045 30.2 21.0 127 118-253 506-638 (877)
376 KOG1258 mRNA processing protei 62.4 1.7E+02 0.0036 28.9 30.9 345 75-426 108-485 (577)
377 PF08424 NRDE-2: NRDE-2, neces 61.6 1.3E+02 0.0028 27.5 17.7 24 354-377 162-185 (321)
378 COG5159 RPN6 26S proteasome re 60.7 1.2E+02 0.0026 26.9 11.2 124 214-337 11-151 (421)
379 COG2178 Predicted RNA-binding 60.6 97 0.0021 25.7 10.6 50 392-443 132-184 (204)
380 KOG4279 Serine/threonine prote 59.9 2.1E+02 0.0045 29.3 17.1 119 188-311 180-320 (1226)
381 PF14689 SPOB_a: Sensor_kinase 59.8 35 0.00075 22.2 5.0 24 350-373 27-50 (62)
382 KOG4507 Uncharacterized conser 59.2 1.2E+02 0.0027 29.8 10.2 152 166-320 568-719 (886)
383 KOG4234 TPR repeat-containing 59.1 1.1E+02 0.0023 25.7 12.3 87 286-375 105-197 (271)
384 KOG4234 TPR repeat-containing 58.8 1.1E+02 0.0023 25.7 9.8 92 249-342 103-199 (271)
385 KOG1464 COP9 signalosome, subu 58.4 1.3E+02 0.0028 26.4 15.3 174 200-373 20-218 (440)
386 PF11864 DUF3384: Domain of un 58.1 1.9E+02 0.004 28.1 21.5 58 257-314 151-216 (464)
387 COG0735 Fur Fe2+/Zn2+ uptake r 57.8 91 0.002 24.5 8.2 68 64-133 5-72 (145)
388 KOG1464 COP9 signalosome, subu 56.9 1.4E+02 0.003 26.3 18.6 214 74-303 20-259 (440)
389 COG5108 RPO41 Mitochondrial DN 56.1 74 0.0016 31.7 8.3 90 316-408 33-130 (1117)
390 TIGR02508 type_III_yscG type I 55.1 79 0.0017 23.0 9.0 85 188-280 22-106 (115)
391 PF14853 Fis1_TPR_C: Fis1 C-te 54.9 22 0.00047 22.3 3.3 35 387-423 7-41 (53)
392 PF12926 MOZART2: Mitotic-spin 54.9 57 0.0012 22.8 5.4 44 66-109 29-72 (88)
393 PRK10564 maltose regulon perip 54.8 26 0.00057 31.1 4.9 43 307-349 252-295 (303)
394 KOG4567 GTPase-activating prot 54.4 85 0.0018 28.1 7.7 58 296-358 263-320 (370)
395 PF06552 TOM20_plant: Plant sp 54.0 1.2E+02 0.0027 24.8 10.5 43 292-342 96-138 (186)
396 KOG0687 26S proteasome regulat 53.5 1.8E+02 0.0038 26.5 12.3 47 117-177 105-151 (393)
397 PF14669 Asp_Glu_race_2: Putat 53.5 1.3E+02 0.0028 24.9 12.1 176 74-266 2-206 (233)
398 COG0735 Fur Fe2+/Zn2+ uptake r 53.1 99 0.0021 24.3 7.5 60 195-255 10-69 (145)
399 PF10475 DUF2450: Protein of u 52.4 1.5E+02 0.0032 26.6 9.5 23 309-331 195-217 (291)
400 PF07575 Nucleopor_Nup85: Nup8 52.2 1.1E+02 0.0024 30.6 9.5 24 359-382 508-531 (566)
401 COG4785 NlpI Lipoprotein NlpI, 51.7 1.5E+02 0.0033 25.2 16.0 160 206-376 99-267 (297)
402 PRK11639 zinc uptake transcrip 51.5 1.1E+02 0.0023 24.8 7.7 68 65-134 11-78 (169)
403 KOG4567 GTPase-activating prot 51.0 1.2E+02 0.0025 27.3 8.0 42 227-268 264-305 (370)
404 PRK08691 DNA polymerase III su 48.2 2.6E+02 0.0055 28.8 11.0 86 292-380 180-279 (709)
405 PF09670 Cas_Cas02710: CRISPR- 48.0 2.4E+02 0.0053 26.5 12.2 62 132-200 135-198 (379)
406 PF11663 Toxin_YhaV: Toxin wit 47.7 24 0.00053 27.0 3.1 35 89-126 104-138 (140)
407 cd00280 TRFH Telomeric Repeat 47.5 1.6E+02 0.0035 24.3 11.6 38 283-323 118-155 (200)
408 PF09454 Vps23_core: Vps23 cor 47.3 50 0.0011 21.7 4.2 48 309-357 6-53 (65)
409 KOG4507 Uncharacterized conser 46.3 2.1E+02 0.0045 28.4 9.5 87 288-375 619-705 (886)
410 KOG2908 26S proteasome regulat 46.0 2.4E+02 0.0052 25.8 10.0 60 280-339 79-143 (380)
411 PF12862 Apc5: Anaphase-promot 45.7 1E+02 0.0022 21.9 6.1 21 249-269 49-69 (94)
412 PRK14956 DNA polymerase III su 44.4 3.1E+02 0.0068 26.7 11.6 45 293-339 183-228 (484)
413 KOG0991 Replication factor C, 44.0 2.1E+02 0.0046 24.7 14.7 127 246-381 135-273 (333)
414 PF11817 Foie-gras_1: Foie gra 43.7 1.6E+02 0.0034 25.7 8.1 21 121-141 15-35 (247)
415 COG5187 RPN7 26S proteasome re 43.7 2.4E+02 0.0052 25.2 11.8 82 104-201 103-185 (412)
416 KOG0890 Protein kinase of the 43.1 6.5E+02 0.014 30.0 23.8 140 86-230 1389-1542(2382)
417 PRK09857 putative transposase; 42.9 2E+02 0.0043 25.9 8.7 58 357-415 217-274 (292)
418 KOG2066 Vacuolar assembly/sort 42.4 4.1E+02 0.0088 27.5 22.9 107 26-144 423-533 (846)
419 COG4785 NlpI Lipoprotein NlpI, 42.1 2.2E+02 0.0048 24.3 15.4 179 220-411 79-267 (297)
420 KOG2908 26S proteasome regulat 41.7 2.8E+02 0.0061 25.4 10.6 79 313-391 77-166 (380)
421 PF02847 MA3: MA3 domain; Int 41.6 1.4E+02 0.003 21.9 6.6 19 283-301 9-27 (113)
422 PRK11639 zinc uptake transcrip 41.5 1.6E+02 0.0034 23.9 7.3 64 300-364 15-78 (169)
423 KOG0686 COP9 signalosome, subu 41.3 3.1E+02 0.0068 25.8 14.8 63 207-269 151-215 (466)
424 PF10475 DUF2450: Protein of u 41.0 2.7E+02 0.0058 25.0 10.3 23 344-366 195-217 (291)
425 PF03745 DUF309: Domain of unk 40.8 1E+02 0.0022 20.0 5.8 46 218-263 11-61 (62)
426 PF12862 Apc5: Anaphase-promot 40.7 1.3E+02 0.0028 21.3 7.2 23 352-374 47-69 (94)
427 PF10366 Vps39_1: Vacuolar sor 40.6 1.5E+02 0.0032 21.9 9.5 27 208-234 41-67 (108)
428 PHA03100 ankyrin repeat protei 40.4 3.5E+02 0.0076 26.2 11.0 235 154-416 48-311 (480)
429 KOG1498 26S proteasome regulat 40.4 3.2E+02 0.0069 25.6 15.4 175 112-306 48-242 (439)
430 PHA02798 ankyrin-like protein; 40.3 3.4E+02 0.0075 26.5 10.8 13 403-415 273-285 (489)
431 PF11817 Foie-gras_1: Foie gra 39.9 2E+02 0.0042 25.1 8.1 17 88-104 18-34 (247)
432 PRK07003 DNA polymerase III su 39.6 4.7E+02 0.01 27.4 11.8 92 328-422 181-286 (830)
433 PF10366 Vps39_1: Vacuolar sor 38.9 1.6E+02 0.0034 21.8 7.8 26 384-409 42-67 (108)
434 PF09454 Vps23_core: Vps23 cor 38.8 51 0.0011 21.7 3.3 53 76-130 4-56 (65)
435 PF04090 RNA_pol_I_TF: RNA pol 38.7 2E+02 0.0043 24.1 7.3 61 311-372 41-102 (199)
436 KOG0989 Replication factor C, 38.1 3.1E+02 0.0067 24.9 11.6 23 357-379 266-288 (346)
437 KOG2471 TPR repeat-containing 38.1 3.9E+02 0.0084 26.0 18.2 280 143-428 26-381 (696)
438 cd07153 Fur_like Ferric uptake 38.0 98 0.0021 22.9 5.3 44 213-256 7-50 (116)
439 KOG0292 Vesicle coat complex C 37.2 5.2E+02 0.011 27.3 11.1 158 211-410 625-782 (1202)
440 KOG4521 Nuclear pore complex, 36.9 6E+02 0.013 27.9 15.1 126 278-406 985-1127(1480)
441 PF09868 DUF2095: Uncharacteri 36.9 84 0.0018 23.3 4.3 41 122-162 67-107 (128)
442 COG4259 Uncharacterized protei 36.8 1.6E+02 0.0036 21.3 6.6 59 363-423 54-112 (121)
443 PF08311 Mad3_BUB1_I: Mad3/BUB 36.5 1.9E+02 0.0042 22.0 9.3 45 96-141 79-124 (126)
444 PRK09462 fur ferric uptake reg 36.4 2.1E+02 0.0046 22.4 7.4 64 68-133 5-69 (148)
445 KOG2396 HAT (Half-A-TPR) repea 36.3 4.2E+02 0.0091 25.8 21.6 89 315-406 464-555 (568)
446 PRK06645 DNA polymerase III su 36.2 3.1E+02 0.0067 27.0 9.5 17 188-204 274-290 (507)
447 PF13877 RPAP3_C: Potential Mo 35.9 53 0.0012 23.4 3.4 23 118-140 67-89 (94)
448 PF10345 Cohesin_load: Cohesin 35.9 4.8E+02 0.01 26.4 28.3 132 86-233 106-252 (608)
449 smart00386 HAT HAT (Half-A-TPR 35.7 68 0.0015 16.6 4.0 12 328-339 4-15 (33)
450 PF01475 FUR: Ferric uptake re 35.5 91 0.002 23.3 4.8 45 211-255 12-56 (120)
451 KOG1586 Protein required for f 35.4 3E+02 0.0064 23.9 13.8 27 317-343 160-186 (288)
452 KOG0686 COP9 signalosome, subu 35.4 3.9E+02 0.0085 25.2 14.4 175 243-425 152-353 (466)
453 PRK14962 DNA polymerase III su 35.3 4.3E+02 0.0094 25.8 15.4 46 172-220 247-292 (472)
454 PF15297 CKAP2_C: Cytoskeleton 35.1 3.6E+02 0.0079 24.8 9.1 44 348-391 142-185 (353)
455 KOG4642 Chaperone-dependent E3 34.9 3.1E+02 0.0066 23.9 11.0 120 214-337 18-143 (284)
456 PF09670 Cas_Cas02710: CRISPR- 34.8 3.9E+02 0.0085 25.1 12.2 55 215-270 140-198 (379)
457 PF14669 Asp_Glu_race_2: Putat 34.1 2.8E+02 0.006 23.1 15.2 55 352-406 138-206 (233)
458 COG5187 RPN7 26S proteasome re 34.0 3.5E+02 0.0075 24.2 13.5 99 240-340 114-221 (412)
459 COG4003 Uncharacterized protei 33.6 80 0.0017 21.7 3.5 19 123-141 38-56 (98)
460 PF09477 Type_III_YscG: Bacter 33.5 2E+02 0.0043 21.3 9.6 75 327-408 22-96 (116)
461 PF12968 DUF3856: Domain of Un 33.3 1.6E+02 0.0035 22.3 5.3 29 389-417 108-141 (144)
462 KOG1308 Hsp70-interacting prot 33.3 77 0.0017 28.8 4.4 89 288-378 126-214 (377)
463 PRK09462 fur ferric uptake reg 32.8 2.4E+02 0.0053 22.1 7.4 37 326-362 32-68 (148)
464 PRK06645 DNA polymerase III su 32.4 5E+02 0.011 25.6 11.1 86 292-380 189-291 (507)
465 PRK14958 DNA polymerase III su 32.2 5.1E+02 0.011 25.6 12.2 86 293-381 181-280 (509)
466 cd07153 Fur_like Ferric uptake 32.1 1.2E+02 0.0026 22.5 4.9 37 360-396 14-50 (116)
467 PF02847 MA3: MA3 domain; Int 31.9 2.1E+02 0.0045 21.0 8.2 22 121-142 7-28 (113)
468 PRK10941 hypothetical protein; 31.3 3.8E+02 0.0081 23.8 10.8 58 316-374 186-243 (269)
469 PRK08691 DNA polymerase III su 31.2 6.1E+02 0.013 26.2 12.1 98 98-205 182-279 (709)
470 PF08311 Mad3_BUB1_I: Mad3/BUB 31.0 2.4E+02 0.0052 21.5 8.5 42 294-335 81-123 (126)
471 PF07678 A2M_comp: A-macroglob 30.1 3.3E+02 0.0072 23.6 8.0 29 310-338 131-159 (246)
472 PRK14700 recombination factor 30.0 4.2E+02 0.009 23.9 13.7 49 207-255 124-175 (300)
473 PRK14956 DNA polymerase III su 30.0 5.4E+02 0.012 25.2 10.7 36 205-240 247-282 (484)
474 KOG0414 Chromosome condensatio 29.9 7.8E+02 0.017 27.0 14.7 186 243-432 525-726 (1251)
475 cd08326 CARD_CASP9 Caspase act 29.4 2E+02 0.0043 20.1 7.5 35 220-258 44-78 (84)
476 PRK14951 DNA polymerase III su 29.4 6.2E+02 0.013 25.7 11.3 84 293-379 186-283 (618)
477 PF02607 B12-binding_2: B12 bi 29.1 1.3E+02 0.0027 20.4 4.3 36 219-254 14-49 (79)
478 KOG0991 Replication factor C, 29.1 3.8E+02 0.0083 23.2 14.0 137 210-356 134-282 (333)
479 KOG2659 LisH motif-containing 29.1 3.7E+02 0.008 23.0 9.2 98 273-372 23-129 (228)
480 PF02631 RecX: RecX family; I 28.6 2.5E+02 0.0055 21.0 11.8 97 293-395 9-106 (121)
481 PF01475 FUR: Ferric uptake re 28.4 1.1E+02 0.0023 22.9 4.1 46 351-396 12-57 (120)
482 PF03745 DUF309: Domain of unk 28.4 1.7E+02 0.0037 19.0 5.6 15 289-303 12-26 (62)
483 PHA03100 ankyrin repeat protei 27.9 5.6E+02 0.012 24.7 12.1 233 121-377 37-307 (480)
484 PF07678 A2M_comp: A-macroglob 27.8 3.9E+02 0.0085 23.2 8.0 45 258-304 116-160 (246)
485 smart00139 MyTH4 Domain in Myo 27.8 1.8E+02 0.0038 22.9 5.3 26 424-449 53-78 (144)
486 PF04097 Nic96: Nup93/Nic96; 27.6 6.7E+02 0.014 25.5 15.6 88 318-410 265-356 (613)
487 PF04910 Tcf25: Transcriptiona 27.5 5.1E+02 0.011 24.2 21.6 126 113-268 37-166 (360)
488 cd07229 Pat_TGL3_like Triacylg 27.4 2.6E+02 0.0056 26.4 7.1 131 193-328 101-254 (391)
489 cd08326 CARD_CASP9 Caspase act 27.4 2.2E+02 0.0048 19.9 6.7 36 254-293 43-78 (84)
490 KOG2034 Vacuolar sorting prote 27.1 7.7E+02 0.017 26.1 29.3 343 86-446 364-792 (911)
491 PF04190 DUF410: Protein of un 27.0 4.4E+02 0.0095 23.2 17.9 193 217-443 1-216 (260)
492 KOG0376 Serine-threonine phosp 26.5 1.4E+02 0.0031 28.5 5.2 105 283-392 11-116 (476)
493 PF12926 MOZART2: Mitotic-spin 26.5 2.3E+02 0.0051 19.9 7.8 14 270-283 37-50 (88)
494 PF04090 RNA_pol_I_TF: RNA pol 26.5 3.9E+02 0.0084 22.4 10.2 50 276-326 41-91 (199)
495 smart00638 LPD_N Lipoprotein N 26.4 6.7E+02 0.015 25.1 25.3 255 188-450 292-563 (574)
496 COG2405 Predicted nucleic acid 26.2 1.4E+02 0.003 23.2 4.1 34 391-424 119-152 (157)
497 cd07229 Pat_TGL3_like Triacylg 26.2 3.1E+02 0.0066 25.9 7.3 17 412-428 233-249 (391)
498 COG5210 GTPase-activating prot 25.8 6.5E+02 0.014 24.7 11.0 48 296-343 362-409 (496)
499 PRK14700 recombination factor 24.9 5.2E+02 0.011 23.3 10.2 62 246-307 128-197 (300)
500 PF05944 Phage_term_smal: Phag 24.9 2.7E+02 0.0058 21.5 5.6 47 263-309 35-81 (132)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.7e-59 Score=472.35 Aligned_cols=386 Identities=19% Similarity=0.185 Sum_probs=345.4
Q ss_pred cchHHHHHHHhhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHh
Q 039177 61 PHILSSLLHSFSIYNCEPPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFY 140 (453)
Q Consensus 61 ~~~~~~ll~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 140 (453)
.+.+..++..|...|+.||..+|+.+|.+|++.|+++.|.++|+.|.+. |+.||..+|+.||.+|++.|++++|.++|+
T Consensus 453 ~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~-Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~ 531 (1060)
T PLN03218 453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCARAGQVAKAFGAYG 531 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 3445667788888999999999999999999999999999999999987 889999999999999999999999999999
Q ss_pred hcccCC-----------------CCcHHHHHHHHHHHHH--CCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcC
Q 039177 141 KIPKFR-----------------INRVGFAIEILNCMIN--DGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLG 201 (453)
Q Consensus 141 ~~~~~~-----------------~~~~~~a~~~~~~m~~--~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g 201 (453)
+|.+.+ .|++++|.++|.+|.. .|+.||..+|+.+|.+|++.|++ ++|.++|+.|.+.|
T Consensus 532 ~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~l--deA~elf~~M~e~g 609 (1060)
T PLN03218 532 IMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV--DRAKEVYQMIHEYN 609 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHcC
Confidence 997654 7889999999999976 67899999999999999999998 99999999999999
Q ss_pred CCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 039177 202 FCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNV 281 (453)
Q Consensus 202 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 281 (453)
+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|++
T Consensus 610 i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyns 689 (1060)
T PLN03218 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSS 689 (1060)
T ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 039177 282 YINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGD 361 (453)
Q Consensus 282 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 361 (453)
+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 690 LI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~ 769 (1060)
T PLN03218 690 LMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDD 769 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----C-------------------CCHHHHHHHHHHHhhCCCCCCHHH
Q 039177 362 IIEACGLLEEALNKGLCTQSSMFDETICGLCQ----R-------------------GLVRKALELLKQMADKDVSPGARV 418 (453)
Q Consensus 362 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~-------------------g~~~~A~~~~~~m~~~~~~p~~~~ 418 (453)
+++|.++|++|.+.|+.||..+|+.++..|.+ + +..++|..+|++|.+.|+.||..|
T Consensus 770 le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T 849 (1060)
T PLN03218 770 ADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEV 849 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHH
Confidence 99999999999999999999999999865432 1 234679999999999999999999
Q ss_pred HHHHHhchhcchhhHHHHHHHHHHhhhcCCCCC
Q 039177 419 WEALLLSSVSKLDFVNTSFIRLVDQILNTPCKM 451 (453)
Q Consensus 419 ~~~ll~a~~~~~~~~~~~~~~~~~~~~~~p~~~ 451 (453)
|+.+|.+++... ....+..|.+.+...|+.+
T Consensus 850 ~~~vL~cl~~~~--~~~~~~~m~~~m~~~~~~~ 880 (1060)
T PLN03218 850 LSQVLGCLQLPH--DATLRNRLIENLGISADSQ 880 (1060)
T ss_pred HHHHHHHhcccc--cHHHHHHHHHHhccCCCCc
Confidence 999994432222 2345678888887777654
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.2e-59 Score=470.32 Aligned_cols=404 Identities=13% Similarity=0.210 Sum_probs=368.7
Q ss_pred cCCCCCCCcchhhhhhchHHHHHHhhhhccCCCCCCCCCCC-CCcchHH----------------HHHHHhhhcCCCCCh
Q 039177 18 RKWPLSPYKAKWHQTLDQQQAKQNVKQSLTTPPTKQQQQIP-KQPHILS----------------SLLHSFSIYNCEPPP 80 (453)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------------~ll~~~~~~~~~p~~ 80 (453)
+..+..++...+...+..+.+.+....++..+..|...+.. .+..... .+++.|. .||.
T Consensus 362 ~~~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~----~pd~ 437 (1060)
T PLN03218 362 GGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR----NPTL 437 (1060)
T ss_pred cccCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC----CCCH
Confidence 34444555555666666666667777777776666555432 2222222 2333332 3999
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC--------------
Q 039177 81 EAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFR-------------- 146 (453)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------------- 146 (453)
.+|+.+|.+|++.|+++.|.++|+.|.+. |+.||..+|++||.+|+++|++++|.++|++|.+.+
T Consensus 438 ~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~-Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~g 516 (1060)
T PLN03218 438 STFNMLMSVCASSQDIDGALRVLRLVQEA-GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDG 516 (1060)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999998 899999999999999999999999999999998754
Q ss_pred ---CCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHH--cCCCcChhhHHHHHHHHHhcCC
Q 039177 147 ---INRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKK--LGFCFGMVDYTNVIRSLVKKEK 221 (453)
Q Consensus 147 ---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~ 221 (453)
.|++++|+++|+.|...|+.||..+|+.+|.+|++.|++ ++|.++|++|.+ .|+.||..+|++||.+|++.|+
T Consensus 517 y~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~--deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 517 CARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV--DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC
Confidence 799999999999999999999999999999999999999 999999999986 5789999999999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 039177 222 VFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIAC 301 (453)
Q Consensus 222 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 301 (453)
+++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|+.
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~e 674 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 039177 302 MEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQS 381 (453)
Q Consensus 302 m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 381 (453)
|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 675 M~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHhchhc
Q 039177 382 SMFDETICGLCQRGLVRKALELLKQMADKDVSPGARVWEALLLSSVS 428 (453)
Q Consensus 382 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~ 428 (453)
.+|+.++.+|++.|++++|.++|++|.+.|+.||..+|++++..|.+
T Consensus 755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~ 801 (1060)
T PLN03218 755 ITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR 801 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999976643
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.5e-56 Score=443.91 Aligned_cols=361 Identities=16% Similarity=0.210 Sum_probs=262.3
Q ss_pred CcchHHHHHHHhhhc-CCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039177 60 QPHILSSLLHSFSIY-NCEPPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNL 138 (453)
Q Consensus 60 ~~~~~~~ll~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 138 (453)
++..+..+|..|... +..||..+|+.++.+|++.++++.+.+++..|.+. |+.||..+|+.|+.+|+++|++++|.++
T Consensus 102 ~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~l 180 (697)
T PLN03081 102 RHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESS-GFEPDQYMMNRVLLMHVKCGMLIDARRL 180 (697)
T ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHhcCCCHHHHHHH
Confidence 344555667777665 47789999999999999999999999999988887 8888999999999999999999999999
Q ss_pred HhhcccCC-------------CCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcC
Q 039177 139 FYKIPKFR-------------INRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFG 205 (453)
Q Consensus 139 ~~~~~~~~-------------~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~ 205 (453)
|++|++.+ .|++++|+++|++|.+.|+.||..+|+.++.+|+..+.. +.+.+++..+.+.|+.+|
T Consensus 181 f~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~--~~~~~l~~~~~~~g~~~d 258 (697)
T PLN03081 181 FDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA--RAGQQLHCCVLKTGVVGD 258 (697)
T ss_pred HhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH--HHHHHHHHHHHHhCCCcc
Confidence 99988766 788899999999998888888888887777777777776 677777777777777777
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 039177 206 MVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYING 285 (453)
Q Consensus 206 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 285 (453)
..+|++||++|+++|++++|.++|++|.+ +|.++|+++|.+|++.|+.++|.++|++|.+.|+.||..||++++.+
T Consensus 259 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a 334 (697)
T PLN03081 259 TFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI 334 (697)
T ss_pred ceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 77777777777777777777777766653 36666777777777777777777777777666666676777777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 039177 286 LCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEA 365 (453)
Q Consensus 286 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 365 (453)
|++.|++++|.+++..|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+ ||..+|++||.+|++.|+.++|
T Consensus 335 ~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A 410 (697)
T PLN03081 335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKA 410 (697)
T ss_pred HHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHH
Confidence 766666666666666666666666666666666666666666666666666643 3566666666666666666666
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhh-CCCCCCHHHHHHHHhchhcchh
Q 039177 366 CGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMAD-KDVSPGARVWEALLLSSVSKLD 431 (453)
Q Consensus 366 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~ll~a~~~~~~ 431 (453)
.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|++++.++++.+.
T Consensus 411 ~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~ 477 (697)
T PLN03081 411 VEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL 477 (697)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCC
Confidence 66666666666666666666666666666666666666666654 4666666666666666544443
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.9e-55 Score=450.20 Aligned_cols=394 Identities=15% Similarity=0.168 Sum_probs=288.6
Q ss_pred CCCCCcchhhhhhchHHHHHHhhhhccCCCCCCCCC------------CCCCcchHHHHHHHhhhcCCCCChhhHHHHHH
Q 039177 21 PLSPYKAKWHQTLDQQQAKQNVKQSLTTPPTKQQQQ------------IPKQPHILSSLLHSFSIYNCEPPPEAYHFVIK 88 (453)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ll~~~~~~~~~p~~~~~~~ll~ 88 (453)
-..++...+++++..+...+....+...+..|.... ......-+..++..|...|+.||..+|+.++.
T Consensus 217 g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~ 296 (857)
T PLN03077 217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS 296 (857)
T ss_pred CCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence 334455555555555555555555554444443211 11223345567888999999999999999999
Q ss_pred HHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC-------------CCcHHHHHH
Q 039177 89 TLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFR-------------INRVGFAIE 155 (453)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~a~~ 155 (453)
+|++.|+++.|.+++..+.+. |+.||..+|++||.+|+++|++++|.++|++|...+ .|++++|++
T Consensus 297 a~~~~g~~~~a~~l~~~~~~~-g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~ 375 (857)
T PLN03077 297 ACELLGDERLGREMHGYVVKT-GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALE 375 (857)
T ss_pred HHHhcCChHHHHHHHHHHHHh-CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHH
Confidence 999999999999999999998 899999999999999999999999999999998876 799999999
Q ss_pred HHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 039177 156 ILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSD 235 (453)
Q Consensus 156 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 235 (453)
+|++|...|+.||..||+.++.+|++.|++ +.+.++++.+.+.|+.++..+||+||++|+++|++++|.++|++|.+
T Consensus 376 lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~--~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~- 452 (857)
T PLN03077 376 TYALMEQDNVSPDEITIASVLSACACLGDL--DVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE- 452 (857)
T ss_pred HHHHHHHhCCCCCceeHHHHHHHHhccchH--HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC-
Confidence 999999999999999999999999999999 99999999999999999999999999999999999999999999975
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 039177 236 GIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYN 315 (453)
Q Consensus 236 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 315 (453)
+|..+|+++|.+|++.|+.++|..+|++|.. ++.||..||+.++.+|++.|.++.+.+++..+.+.|+.+|..+++
T Consensus 453 ---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~n 528 (857)
T PLN03077 453 ---KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN 528 (857)
T ss_pred ---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceech
Confidence 4778888888888888888888888888875 477888888777777777777777777777776666655555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCC
Q 039177 316 TLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRG 395 (453)
Q Consensus 316 ~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 395 (453)
.||.+|+++|++++|.++|+.+ .||..+|++||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|
T Consensus 529 aLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 603 (857)
T PLN03077 529 ALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG 603 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC
Confidence 5555554444444444444443 23444444444444444444444444444444444444444444444444444
Q ss_pred CHHHHHHHHHHHh-hCCCCCCHHHHHHHHhchh
Q 039177 396 LVRKALELLKQMA-DKDVSPGARVWEALLLSSV 427 (453)
Q Consensus 396 ~~~~A~~~~~~m~-~~~~~p~~~~~~~ll~a~~ 427 (453)
++++|.++|++|. +.|+.|+..+|++++.++.
T Consensus 604 ~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~ 636 (857)
T PLN03077 604 MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG 636 (857)
T ss_pred hHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 4444444444444 3444444444444444443
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.1e-55 Score=449.89 Aligned_cols=375 Identities=18% Similarity=0.189 Sum_probs=326.0
Q ss_pred hHHHHHHHhhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhc
Q 039177 63 ILSSLLHSFSIYNCEPPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKI 142 (453)
Q Consensus 63 ~~~~ll~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 142 (453)
.+..+++.|...|+.||..+|+.++++|++.+++..+.+++..+.+. |+.++..++++||.+|+++|++++|.++|++|
T Consensus 170 ~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m 248 (857)
T PLN03077 170 EALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRF-GFELDVDVVNALITMYVKCGDVVSARLVFDRM 248 (857)
T ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHc-CCCcccchHhHHHHHHhcCCCHHHHHHHHhcC
Confidence 34566778888899999999999999999999999999999999988 89999999999999999999999999999999
Q ss_pred ccCC-------------CCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhH
Q 039177 143 PKFR-------------INRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDY 209 (453)
Q Consensus 143 ~~~~-------------~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 209 (453)
+..+ .|++++|+++|.+|...|+.||..||+.++.+|++.|+. +.+.+++..|.+.|+.||..+|
T Consensus 249 ~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~--~~a~~l~~~~~~~g~~~d~~~~ 326 (857)
T PLN03077 249 PRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE--RLGREMHGYVVKTGFAVDVSVC 326 (857)
T ss_pred CCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh--HHHHHHHHHHHHhCCccchHHH
Confidence 8876 789999999999999999999999999999999999999 8999999999999999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 039177 210 TNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQ 289 (453)
Q Consensus 210 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 289 (453)
|+||.+|+++|++++|.++|++|.. ||..+|+++|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.
T Consensus 327 n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~ 402 (857)
T PLN03077 327 NSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL 402 (857)
T ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhcc
Confidence 9999999999999999999999863 688899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 039177 290 NNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLL 369 (453)
Q Consensus 290 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 369 (453)
|++++|.++++.|.+.|+.|+..+|+.||.+|++.|++++|.++|++|.+. |..+|+.+|.+|++.|+.++|..+|
T Consensus 403 g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~----d~vs~~~mi~~~~~~g~~~eA~~lf 478 (857)
T PLN03077 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFF 478 (857)
T ss_pred chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC----CeeeHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999998888888888888888888888888888877653 4555666666665555555555555
Q ss_pred HHHHHCCC-----------------------------------------------------------------CCChhhH
Q 039177 370 EEALNKGL-----------------------------------------------------------------CTQSSMF 384 (453)
Q Consensus 370 ~~m~~~~~-----------------------------------------------------------------~~~~~~~ 384 (453)
++|.. ++ .+|..+|
T Consensus 479 ~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~ 557 (857)
T PLN03077 479 RQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSW 557 (857)
T ss_pred HHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhH
Confidence 55543 22 3566678
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHhchhc--chhhHHHHHHHHHHhhhcCCC
Q 039177 385 DETICGLCQRGLVRKALELLKQMADKDVSPGARVWEALLLSSVS--KLDFVNTSFIRLVDQILNTPC 449 (453)
Q Consensus 385 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~--~~~~~~~~~~~~~~~~~~~p~ 449 (453)
+.+|.+|++.|+.++|.++|++|.+.|+.||..||+++|.+|.. ..+.+...|..|.++....|.
T Consensus 558 n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 558 NILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence 88999999999999999999999999999999999999999974 445556668888777666664
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.6e-54 Score=430.85 Aligned_cols=396 Identities=13% Similarity=0.187 Sum_probs=363.2
Q ss_pred CCCCCCCcchhhhhhchHHHHHHhhhhccCCCCCCCC-CCCCCcchHHHH----------------HHHhhhcCCCCChh
Q 039177 19 KWPLSPYKAKWHQTLDQQQAKQNVKQSLTTPPTKQQQ-QIPKQPHILSSL----------------LHSFSIYNCEPPPE 81 (453)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l----------------l~~~~~~~~~p~~~ 81 (453)
......+..+|++++..+...+....++..+..+... +..++..++..+ +..|...|+.||..
T Consensus 80 ~~~~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~ 159 (697)
T PLN03081 80 DTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY 159 (697)
T ss_pred cccCCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchH
Confidence 3445667789999999999988888888776655433 234555554444 45566789999999
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC---------------
Q 039177 82 AYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFR--------------- 146 (453)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------------- 146 (453)
+|+.++.+|++.|+++.|.++|+.|. .||..+|+++|.+|++.|++++|.++|++|.+.+
T Consensus 160 ~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~ 234 (697)
T PLN03081 160 MMNRVLLMHVKCGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS 234 (697)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 99999999999999999999999996 4688999999999999999999999999997654
Q ss_pred --CCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhH
Q 039177 147 --INRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFD 224 (453)
Q Consensus 147 --~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 224 (453)
.+..+.+.+++..+.+.|+.||..+|+.|+.+|++.|++ ++|.++|++|.. +|..+||+||.+|++.|++++
T Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~--~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~e 308 (697)
T PLN03081 235 AGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDI--EDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEE 308 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCH--HHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHH
Confidence 578888999999999999999999999999999999999 999999999964 689999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 225 ALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEE 304 (453)
Q Consensus 225 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 304 (453)
|+++|++|.+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+
T Consensus 309 A~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~ 388 (697)
T PLN03081 309 ALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR 388 (697)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCChhh
Q 039177 305 LGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALN-KGLCTQSSM 383 (453)
Q Consensus 305 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~ 383 (453)
||..+||.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+
T Consensus 389 ----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~ 464 (697)
T PLN03081 389 ----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMH 464 (697)
T ss_pred ----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccc
Confidence 799999999999999999999999999999999999999999999999999999999999999986 599999999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHhchhcchhh
Q 039177 384 FDETICGLCQRGLVRKALELLKQMADKDVSPGARVWEALLLSSVSKLDF 432 (453)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~~~~ 432 (453)
|+.++.+|++.|++++|.+++++| ++.|+..+|++|+.+|..+++.
T Consensus 465 y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~ 510 (697)
T PLN03081 465 YACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNL 510 (697)
T ss_pred hHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCc
Confidence 999999999999999999999887 7899999999999999766544
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.91 E-value=2.9e-20 Score=194.29 Aligned_cols=348 Identities=11% Similarity=0.073 Sum_probs=196.4
Q ss_pred ChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC------------
Q 039177 79 PPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFR------------ 146 (453)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------------ 146 (453)
+..++..+...+.+.|++++|...++.+.+.. +.+...+..++..|.+.|++++|..+++.+....
T Consensus 532 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 609 (899)
T TIGR02917 532 NLRAILALAGLYLRTGNEEEAVAWLEKAAELN--PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGR 609 (899)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34445555555555555555555555555432 3344455555555555555555555555544322
Q ss_pred ----CCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCCh
Q 039177 147 ----INRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKV 222 (453)
Q Consensus 147 ----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 222 (453)
.+++++|+..|+.+.... +.+...+..+..++...|+. ++|..+++.+.+.. +.+..++..++..+...|++
T Consensus 610 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 685 (899)
T TIGR02917 610 AQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNY--AKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRT 685 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCH--HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCH
Confidence 355555555555555432 22344455555555555555 55666555555443 33345555566666666666
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 039177 223 FDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACM 302 (453)
Q Consensus 223 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 302 (453)
++|.++++.+.+.... +...+..+...+...|++++|...|+.+...+ |+..++..+..++.+.|+.++|.+.++.+
T Consensus 686 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 762 (899)
T TIGR02917 686 ESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAW 762 (899)
T ss_pred HHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666666554322 44555555566666666666666666665543 33355555666666666666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 039177 303 EELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSS 382 (453)
Q Consensus 303 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 382 (453)
.+.. ..+...+..+...|...|++++|..+|+.+.+..+. +...+..+...+...|+ .+|+.+++++.+.. +-+..
T Consensus 763 l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~ 838 (899)
T TIGR02917 763 LKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPA 838 (899)
T ss_pred HHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcH
Confidence 5543 224556666666666666666666666666665443 55666666666666666 55666666665542 22344
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHhchh--cchhhHHHHHHHH
Q 039177 383 MFDETICGLCQRGLVRKALELLKQMADKDVSPGARVWEALLLSSV--SKLDFVNTSFIRL 440 (453)
Q Consensus 383 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~--~~~~~~~~~~~~~ 440 (453)
++..+...+...|++++|.++++++.+.+.. +..++..+..++. ++.+.+.+.+.++
T Consensus 839 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 839 ILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4556666677777777777777777764432 5666666655554 3334444444444
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=5.6e-21 Score=179.83 Aligned_cols=302 Identities=12% Similarity=0.058 Sum_probs=245.2
Q ss_pred HHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCcc
Q 039177 88 KTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCV 167 (453)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p 167 (453)
..+...|+++.|...|..+.+.. +.+..++..+...|...|++++|..+++.+.. .+..+
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~------------------~~~~~ 102 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLS------------------RPDLT 102 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhc------------------CCCCC
Confidence 34567799999999999999873 55677899999999999999999998887432 22111
Q ss_pred ---ChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---
Q 039177 168 ---DGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDI--- 241 (453)
Q Consensus 168 ---~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--- 241 (453)
+..++..+...+...|+. +.|..+|+++.+.. +.+..+++.++..+.+.|++++|++.++.+.+.+..++.
T Consensus 103 ~~~~~~~~~~La~~~~~~g~~--~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 179 (389)
T PRK11788 103 REQRLLALQELGQDYLKAGLL--DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI 179 (389)
T ss_pred HHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH
Confidence 124678888899999998 99999999998763 456778999999999999999999999999886544322
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 039177 242 -VCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQA 320 (453)
Q Consensus 242 -~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 320 (453)
..+..+...+.+.|++++|...|+++.+.. +.+...+..+...|.+.|++++|.++|+++.+.+......+++.++.+
T Consensus 180 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~ 258 (389)
T PRK11788 180 AHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMEC 258 (389)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHH
Confidence 245567778889999999999999998754 234667778889999999999999999999875422224578889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh---CCCH
Q 039177 321 LCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQ---RGLV 397 (453)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~---~g~~ 397 (453)
|.+.|++++|...++.+.+.. |+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.
T Consensus 259 ~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~ 334 (389)
T PRK11788 259 YQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRA 334 (389)
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccc
Confidence 999999999999999998874 45566688999999999999999999998875 5888888888877764 5689
Q ss_pred HHHHHHHHHHhhCCCCCCHH
Q 039177 398 RKALELLKQMADKDVSPGAR 417 (453)
Q Consensus 398 ~~A~~~~~~m~~~~~~p~~~ 417 (453)
++++.++++|.++++.|+..
T Consensus 335 ~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 335 KESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hhHHHHHHHHHHHHHhCCCC
Confidence 99999999999888877766
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.91 E-value=5.3e-20 Score=192.32 Aligned_cols=322 Identities=10% Similarity=0.027 Sum_probs=192.1
Q ss_pred CCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC---------
Q 039177 76 CEPPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFR--------- 146 (453)
Q Consensus 76 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------- 146 (453)
.+.++.++..+...+...|++++|...|+.+.+.. +.+...+..+...+...|++++|...|+++....
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 538 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILA 538 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 34566677777777888888888888887777653 4455666777777777777777777777664432
Q ss_pred -------CCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhc
Q 039177 147 -------INRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKK 219 (453)
Q Consensus 147 -------~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 219 (453)
.|+.++|..+++++...+ +.+...+..+...+...|+. ++|..+++.+.+.. +.+...|..+...|.+.
T Consensus 539 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 614 (899)
T TIGR02917 539 LAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQL--KKALAILNEAADAA-PDSPEAWLMLGRAQLAA 614 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCH--HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 466666666666665532 23444555666666666666 66666666665543 34555666666666666
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 039177 220 EKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMI 299 (453)
Q Consensus 220 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~ 299 (453)
|++++|+..|+.+.+.... +...+..+..++...|++++|..+|+.+.+.. +.+..++..+...+...|++++|.+++
T Consensus 615 ~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 615 GDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666666654322 45556666666666666666666666665533 233555555666666666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 039177 300 ACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCT 379 (453)
Q Consensus 300 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 379 (453)
+.+.+.+ ..+...+..+...+.+.|++++|...|..+...+. +..++..+..++.+.|++++|.+.++++.+.. +.
T Consensus 693 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~ 768 (899)
T TIGR02917 693 KSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PN 768 (899)
T ss_pred HHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 6665543 22444555555555566666666666665555432 22444455555555555555555555555443 23
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 039177 380 QSSMFDETICGLCQRGLVRKALELLKQMAD 409 (453)
Q Consensus 380 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (453)
+...+..+...|...|++++|.++|+++.+
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 444455555555555555555555555554
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=2.9e-19 Score=168.16 Aligned_cols=296 Identities=13% Similarity=0.061 Sum_probs=237.2
Q ss_pred HHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC
Q 039177 123 IKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGF 202 (453)
Q Consensus 123 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~ 202 (453)
...+...|++++|...|.+ +...+ +.+..++..+...+...|+. ++|..+++.+.+.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~------------------al~~~-p~~~~~~~~la~~~~~~g~~--~~A~~~~~~~l~~~~ 100 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIE------------------MLKVD-PETVELHLALGNLFRRRGEV--DRAIRIHQNLLSRPD 100 (389)
T ss_pred HHHHHhcCChHHHHHHHHH------------------HHhcC-cccHHHHHHHHHHHHHcCcH--HHHHHHHHHHhcCCC
Confidence 3345677888888877777 44431 23456788899999999999 999999999887642
Q ss_pred CcC---hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh---
Q 039177 203 CFG---MVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDV--- 276 (453)
Q Consensus 203 ~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~--- 276 (453)
.++ ...+..+...|.+.|++++|+.+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+..
T Consensus 101 ~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 179 (389)
T PRK11788 101 LTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI 179 (389)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH
Confidence 221 3568899999999999999999999998763 347789999999999999999999999999886533321
Q ss_pred -hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 039177 277 -YTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDG 355 (453)
Q Consensus 277 -~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 355 (453)
..+..+...+.+.|++++|...|+++.+.. ..+...+..+...|.+.|++++|.++++++.+.+......+++.++.+
T Consensus 180 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~ 258 (389)
T PRK11788 180 AHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMEC 258 (389)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHH
Confidence 245567778899999999999999998854 224567888889999999999999999999987544345678899999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHhchhc-----ch
Q 039177 356 LASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADKDVSPGARVWEALLLSSVS-----KL 430 (453)
Q Consensus 356 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~-----~~ 430 (453)
|.+.|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. ..
T Consensus 259 ~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~ 334 (389)
T PRK11788 259 YQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRA 334 (389)
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccc
Confidence 99999999999999999876 466667788999999999999999999998854 7999999988876543 34
Q ss_pred hhHHHHHHHHHHhhh
Q 039177 431 DFVNTSFIRLVDQIL 445 (453)
Q Consensus 431 ~~~~~~~~~~~~~~~ 445 (453)
+.+...++++.++..
T Consensus 335 ~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 335 KESLLLLRDLVGEQL 349 (389)
T ss_pred hhHHHHHHHHHHHHH
Confidence 455566777776554
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=1.8e-16 Score=156.95 Aligned_cols=315 Identities=7% Similarity=-0.035 Sum_probs=227.5
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC----------------C
Q 039177 84 HFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFR----------------I 147 (453)
Q Consensus 84 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----------------~ 147 (453)
..++..+.+.|++++|..+++...... +.+...+..++.+....|++++|+..|+++...+ .
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 345556666677777777777666653 3344455555566666777777777776655433 4
Q ss_pred CcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHH
Q 039177 148 NRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALG 227 (453)
Q Consensus 148 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 227 (453)
|++++|+..++++.... +.+...+..+...+...|+. ++|...++.+.... +.+...+..+ ..+...|++++|+.
T Consensus 124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~--~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKE--LQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCh--HHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHH
Confidence 56666666666666531 23456777888888999988 88998888776654 2233333333 34788899999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH----HHHHHHHHH
Q 039177 228 ILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEA----GIKMIACME 303 (453)
Q Consensus 228 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~ 303 (453)
+++.+.+....++...+..+..++...|++++|+..+++..+.. +.+...+..+...+...|++++ |...|+...
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 99988776544455555666778888999999999999988764 3456777788888899998885 788888888
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-h
Q 039177 304 ELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQS-S 382 (453)
Q Consensus 304 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~ 382 (453)
+... .+...+..+...+.+.|++++|...++...+.... +...+..+..+|.+.|++++|...++.+...+ |+. .
T Consensus 278 ~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~ 353 (656)
T PRK15174 278 QFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSK 353 (656)
T ss_pred hhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchH
Confidence 7532 24568888889999999999999999998887554 56677788888999999999999999888753 333 2
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHhhC
Q 039177 383 MFDETICGLCQRGLVRKALELLKQMADK 410 (453)
Q Consensus 383 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 410 (453)
.+..+..++...|+.++|...|++..+.
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3444566788899999999999988753
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.83 E-value=2.2e-17 Score=150.20 Aligned_cols=324 Identities=14% Similarity=0.066 Sum_probs=242.1
Q ss_pred CChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC-----------
Q 039177 78 PPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFR----------- 146 (453)
Q Consensus 78 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----------- 146 (453)
--.++|+.+.+.+-..|++++|+.+++.+.+.. +.....|..+..++...|+.+.|...|....+.+
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lg 191 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLG 191 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchh
Confidence 346789999999999999999999999999874 5567789999999999999999998888766554
Q ss_pred ---------------------------------------CCcHHHHHHHHHHHHHCCCccC-hHhHHHHHHHHHhcCCCC
Q 039177 147 ---------------------------------------INRVGFAIEILNCMINDGFCVD-GKTCSLILSSVCEQRDLS 186 (453)
Q Consensus 147 ---------------------------------------~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~ 186 (453)
.|+.-.|+..|++.+. +.|+ ...|-.|...|...+.+
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~- 268 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIF- 268 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcc-
Confidence 3444455555555443 2233 23455555555555555
Q ss_pred hHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 039177 187 SDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDE 266 (453)
Q Consensus 187 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 266 (453)
++|...+....... +-...++..|...|-..|.++.|+..|++..+..+. =...|+.|..++...|++.+|++.|..
T Consensus 269 -d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 269 -DRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred -hHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHH
Confidence 55555555444432 223445666666666777777777777777765333 356788888888888888888888888
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 039177 267 LLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDV-ITYNTLLQALCKVRELNRLRELVKEMKWKGIVLN 345 (453)
Q Consensus 267 m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~ 345 (453)
.+... ..-..+.+.+...|...|.+++|..+|....+ +.|.- ..++.|...|-+.|++++|+..+++.++-.+. =
T Consensus 346 aL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~-f 421 (966)
T KOG4626|consen 346 ALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT-F 421 (966)
T ss_pred HHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch-H
Confidence 87753 23356677888888899999999998888877 34553 47888999999999999999999988876332 3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCH
Q 039177 346 LQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADKDVSPGA 416 (453)
Q Consensus 346 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 416 (453)
...|+.+...|-..|+++.|.+.+.+.+..+ +.-...++.|...|...|++.+|+.-+++.+ .++||.
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aL--klkPDf 489 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTAL--KLKPDF 489 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHH--ccCCCC
Confidence 4688899999999999999999999888754 2234568889999999999999999999988 567774
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=6e-16 Score=153.50 Aligned_cols=63 Identities=10% Similarity=0.121 Sum_probs=39.1
Q ss_pred CCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039177 75 NCEPPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLF 139 (453)
Q Consensus 75 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 139 (453)
.+.|++..|..+..++.+.|+++.|+..++...+.. +.+...+..+..+|...|++++|+.-|
T Consensus 155 ~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~eA~~~~ 217 (615)
T TIGR00990 155 ECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYADALLDL 217 (615)
T ss_pred hcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345566666666666666666666666666666542 445556666666666666666665433
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=7.2e-15 Score=145.84 Aligned_cols=348 Identities=12% Similarity=-0.006 Sum_probs=251.1
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC----------------
Q 039177 83 YHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFR---------------- 146 (453)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---------------- 146 (453)
+......+.+.|+++.|+..|+...+. .|+...|..+..+|.+.|++++|++.++...+.+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 446778888999999999999999865 5678899999999999999999999999877655
Q ss_pred CCcHHHHHHHHHHHHHCC----------------------------Ccc-ChHhHHHHHHHH------------------
Q 039177 147 INRVGFAIEILNCMINDG----------------------------FCV-DGKTCSLILSSV------------------ 179 (453)
Q Consensus 147 ~~~~~~a~~~~~~m~~~~----------------------------~~p-~~~~~~~ll~~~------------------ 179 (453)
.|++++|+..|......+ ..| +...+..+...+
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 688888876654432211 001 000000000000
Q ss_pred ------------------HhcCCCChHHHHHHHHHHHHcC-C-CcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 039177 180 ------------------CEQRDLSSDELLGFVQEMKKLG-F-CFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKP 239 (453)
Q Consensus 180 ------------------~~~~~~~~~~a~~~~~~~~~~g-~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 239 (453)
...+.+ ++|.+.|+...+.+ . +.....|+.+...+...|++++|+..|++..+....
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y--~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~- 363 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESY--EEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR- 363 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhH--HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-
Confidence 011234 67888888887764 2 334566888888999999999999999999876432
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039177 240 DIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQ 319 (453)
Q Consensus 240 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 319 (453)
+...|..+...+...|++++|...|+..++.. +.+...|..+...+...|++++|...|+...+... .+...+..+..
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~ 441 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGV 441 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHH
Confidence 46678888888999999999999999988754 34577888888899999999999999999988542 24567778888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh------hHHHHHHHHHh
Q 039177 320 ALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSS------MFDETICGLCQ 393 (453)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~------~~~~li~~~~~ 393 (453)
.+.+.|++++|+..|+...+.... +...++.+...+...|++++|+..|++..+.....+.. .++.....+..
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 999999999999999998886443 67788899999999999999999999987753221111 12222233445
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHhchh--cchhhHHHHHHHHH
Q 039177 394 RGLVRKALELLKQMADKDVSPGAR-VWEALLLSSV--SKLDFVNTSFIRLV 441 (453)
Q Consensus 394 ~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~a~~--~~~~~~~~~~~~~~ 441 (453)
.|++++|.+++++..+. .|+.. .+..+-..+. ++.+.+...+.+..
T Consensus 521 ~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~ 569 (615)
T TIGR00990 521 KQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAA 569 (615)
T ss_pred hhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 68999999999998754 45443 4555555443 34444444444443
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.79 E-value=3.9e-15 Score=147.43 Aligned_cols=320 Identities=11% Similarity=0.022 Sum_probs=243.6
Q ss_pred ChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC------------
Q 039177 79 PPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFR------------ 146 (453)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------------ 146 (453)
++..+..++.++...|+++.|...++.+.... |.+...+..+...+...|++++|+..|++....+
T Consensus 75 ~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~ 152 (656)
T PRK15174 75 GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLR 152 (656)
T ss_pred chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 34455666677778999999999999999874 5667788999999999999999999999877643
Q ss_pred ----CCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCCh
Q 039177 147 ----INRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKV 222 (453)
Q Consensus 147 ----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 222 (453)
.|++++|...++.+....-. +...+.. +..+...|+. ++|...++.+.+....++...+..+...+.+.|++
T Consensus 153 ~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~-~~~l~~~g~~--~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~ 228 (656)
T PRK15174 153 TLVLMDKELQAISLARTQAQEVPP-RGDMIAT-CLSFLNKSRL--PEDHDLARALLPFFALERQESAGLAVDTLCAVGKY 228 (656)
T ss_pred HHHHCCChHHHHHHHHHHHHhCCC-CHHHHHH-HHHHHHcCCH--HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCH
Confidence 68899999999888764322 2223333 3447788988 99999999987765333444556667889999999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 039177 223 FDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVK----AEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKM 298 (453)
Q Consensus 223 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~----a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~ 298 (453)
++|+..++++.+.... +...+..+...+...|++++ |+..|+...+.. +.+...+..+...+.+.|++++|...
T Consensus 229 ~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~ 306 (656)
T PRK15174 229 QEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPL 306 (656)
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999987544 67788889999999999986 899999998854 34567888999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 039177 299 IACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLC 378 (453)
Q Consensus 299 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 378 (453)
++...+.... +...+..+..+|.+.|++++|...++.+.+.+.. +...+..+..++...|+.++|...|++..+....
T Consensus 307 l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 307 LQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 9999985422 4557778889999999999999999999987443 3334455677889999999999999998876322
Q ss_pred CChhhHH----HHHHHHHhCCCHHHHHHHHHHHh
Q 039177 379 TQSSMFD----ETICGLCQRGLVRKALELLKQMA 408 (453)
Q Consensus 379 ~~~~~~~----~li~~~~~~g~~~~A~~~~~~m~ 408 (453)
-....|. .+-.++...+..++....+.++.
T Consensus 385 ~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~ 418 (656)
T PRK15174 385 HLPQSFEEGLLALDGQISAVNLPPERLDWAWEVA 418 (656)
T ss_pred hchhhHHHHHHHHHHHHHhcCCccchhhHHHHHh
Confidence 1222233 33333444455544444555544
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.77 E-value=3.4e-14 Score=150.31 Aligned_cols=314 Identities=11% Similarity=0.002 Sum_probs=216.2
Q ss_pred HHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC--------------------
Q 039177 87 IKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFR-------------------- 146 (453)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------------------- 146 (453)
...+...|++++|+..|+...+.. +.+..++..+..+|.+.|++++|+..|++..+.+
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 455667888888888888888763 5577788888888888888888888887765422
Q ss_pred ----------CCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHH-----
Q 039177 147 ----------INRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTN----- 211 (453)
Q Consensus 147 ----------~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----- 211 (453)
.+++++|+..|++.+... +.+...+..+...+...|+. ++|.+.|+++.+.. +.+...+..
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~--~eA~~~y~~aL~~~-p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDY--AAAERYYQQALRMD-PGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 356677788888777642 23455666777788888888 88888888877653 222222222
Q ss_pred -------------------------------------HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 039177 212 -------------------------------------VIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQ 254 (453)
Q Consensus 212 -------------------------------------li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 254 (453)
+...+...|++++|++.|++..+..+. +...+..+...|.+.
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQA 508 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 334455678888888888888876544 566777788888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----------------------------
Q 039177 255 EDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEEL----------------------------- 305 (453)
Q Consensus 255 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----------------------------- 305 (453)
|++++|...++++.+... .+...+..+...+...++.++|...++.+...
T Consensus 509 G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 509 GQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 999999888888876431 22222222222233344444444333322100
Q ss_pred ----------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 306 ----------GSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNK 375 (453)
Q Consensus 306 ----------~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 375 (453)
....+...+..+...+.+.|++++|+..|+.+.+..+. +...+..+...|...|+.++|.+.++...+.
T Consensus 588 ~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 588 KEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred CHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 01234445667778888888999999999888887555 6778888888888889999999998877654
Q ss_pred CCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhC
Q 039177 376 GLCTQSSMFDETICGLCQRGLVRKALELLKQMADK 410 (453)
Q Consensus 376 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 410 (453)
. ..+..++..+..++...|++++|.++++++...
T Consensus 667 ~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 667 A-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred C-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 2 223445666777888889999999999988753
No 17
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=2.6e-14 Score=124.94 Aligned_cols=318 Identities=16% Similarity=0.159 Sum_probs=217.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHhhcccCC-------------CCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhc
Q 039177 116 EFIFIDLIKTYADAHRFQDSVNLFYKIPKFR-------------INRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQ 182 (453)
Q Consensus 116 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 182 (453)
..++.+||.+.++-...+.|.+++.+-.... ...+....++..+|....+.||..|||+++++.++.
T Consensus 207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akf 286 (625)
T KOG4422|consen 207 DETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLFTFNALLSCAAKF 286 (625)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchHhHHHHHHHHHHh
Confidence 3455555555555555555555554433221 111222345677799999999999999999999999
Q ss_pred CCCC--hHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhH-HHHHHHHHHh----CCCCC----CHHHHHHHHHHH
Q 039177 183 RDLS--SDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFD-ALGILNQMKS----DGIKP----DIVCYTMVLNGV 251 (453)
Q Consensus 183 ~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~----~~~~~----~~~~~~~ll~~~ 251 (453)
|++. ...+.+++.+|++.|+.|+..+|..+|..+++.++..+ |..++.++.. +.++| |...|...+..|
T Consensus 287 g~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic 366 (625)
T KOG4422|consen 287 GKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSIC 366 (625)
T ss_pred cchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHH
Confidence 9762 25677889999999999999999999999999988754 4444444432 22332 566788888999
Q ss_pred HhcCCHHHHHHHHHHHHHCC----CCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 039177 252 IVQEDYVKAEELFDELLVLG----LVPD---VYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKV 324 (453)
Q Consensus 252 ~~~g~~~~a~~~~~~m~~~g----~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 324 (453)
.+..+.+.|.++..-+.... +.|+ ..-|..+....|+....+.....|+.|.-.-+-|+..+...++++..-.
T Consensus 367 ~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~ 446 (625)
T KOG4422|consen 367 SSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVA 446 (625)
T ss_pred HHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhc
Confidence 99999999999887664321 1222 2335667778889999999999999999877789999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC-CH--------HH-----HHHHH-------HHHHHCCCCCChhh
Q 039177 325 RELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKG-DI--------IE-----ACGLL-------EEALNKGLCTQSSM 383 (453)
Q Consensus 325 ~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~--------~~-----A~~~~-------~~m~~~~~~~~~~~ 383 (453)
|.++-.-++|.+++..|...+...-.-++..+++.. +. .. |..++ .+|.+. ......
T Consensus 447 ~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~ 524 (625)
T KOG4422|consen 447 NRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATS 524 (625)
T ss_pred CcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhH
Confidence 999999999999999886555555555555555433 11 11 11121 122222 334445
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhCC----CCCCHHHHHHHHhchhcchhhHHH
Q 039177 384 FDETICGLCQRGLVRKALELLKQMADKD----VSPGARVWEALLLSSVSKLDFVNT 435 (453)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p~~~~~~~ll~a~~~~~~~~~~ 435 (453)
.+.+...+.+.|..++|.++|.-+.+++ ..|......-++++...+.+...+
T Consensus 525 l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA 580 (625)
T KOG4422|consen 525 LNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQA 580 (625)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHH
Confidence 7777888899999999999999986543 234333344555555555554443
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.74 E-value=1.7e-13 Score=138.73 Aligned_cols=357 Identities=14% Similarity=0.085 Sum_probs=231.9
Q ss_pred ChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC------------
Q 039177 79 PPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFR------------ 146 (453)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------------ 146 (453)
+...+..+..++.+.|++++|..+++...+.. +.+...+..+..++...|++++|+..++++.+..
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~~~~la~~ 125 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKANLLALAYV 125 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34457778888888888888888888887663 5556677788888888888888888887765432
Q ss_pred ---CCcHHHHHHHHHHHHHCCCcc-ChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcCh------hhHHHHHHHH
Q 039177 147 ---INRVGFAIEILNCMINDGFCV-DGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGM------VDYTNVIRSL 216 (453)
Q Consensus 147 ---~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~------~~~~~li~~~ 216 (453)
.|+.++|+..++++... .| +...+..+..++...+.. +.|+..++.... .|+. .....++..+
T Consensus 126 l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~--e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~ 198 (765)
T PRK10049 126 YKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLS--APALGAIDDANL---TPAEKRDLEADAAAELVRLS 198 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCh--HHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhh
Confidence 45566666666666653 23 233344445555555555 556655554332 1110 0111122222
Q ss_pred H-----hcCCh---hHHHHHHHHHHhC-CCCCCHH-HHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CChhhHHH
Q 039177 217 V-----KKEKV---FDALGILNQMKSD-GIKPDIV-CYT----MVLNGVIVQEDYVKAEELFDELLVLGLV-PDVYTYNV 281 (453)
Q Consensus 217 ~-----~~g~~---~~a~~~~~~m~~~-~~~~~~~-~~~----~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~ 281 (453)
. ..+++ ++|++.++.+.+. ...|+.. .+. ..+.++...|++++|+..|+.+.+.+.. |+. .-..
T Consensus 199 ~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~ 277 (765)
T PRK10049 199 FMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRW 277 (765)
T ss_pred cccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHH
Confidence 1 11223 5667777777643 1222221 111 1134556779999999999999887532 322 2223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CcC--
Q 039177 282 YINGLCKQNNVEAGIKMIACMEELGSKP---DVITYNTLLQALCKVRELNRLRELVKEMKWKGI-----------VLN-- 345 (453)
Q Consensus 282 li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----------~p~-- 345 (453)
+..+|...|++++|...|+.+.+..... .......+..++.+.|++++|..+++.+..... .|+
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~ 357 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD 357 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch
Confidence 5678999999999999999987643211 134566777788999999999999999887632 123
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHH-HHH
Q 039177 346 -LQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADKDVSPGARVWE-ALL 423 (453)
Q Consensus 346 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~ll 423 (453)
...+..+...+...|+.++|+++++++.... +.+...+..+...+...|++++|++.+++..+ +.|+...+. ...
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a 434 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQA 434 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHH
Confidence 2355677788889999999999999998764 44567788889999999999999999999884 457643332 222
Q ss_pred hch--hcchhhHHHHHHHHHHhhhcCC
Q 039177 424 LSS--VSKLDFVNTSFIRLVDQILNTP 448 (453)
Q Consensus 424 ~a~--~~~~~~~~~~~~~~~~~~~~~p 448 (453)
..+ .++.+.+...+.++++..+++|
T Consensus 435 ~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 435 WTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 222 3566666667777777666554
No 19
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.74 E-value=2.2e-13 Score=144.21 Aligned_cols=353 Identities=10% Similarity=0.010 Sum_probs=243.6
Q ss_pred ChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccC-------------
Q 039177 79 PPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKF------------- 145 (453)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------------- 145 (453)
+...+..+...+...|++++|++.|+.+.+.. +.+...+..+...|. .++.++|+.+++.++..
T Consensus 384 ~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~ 460 (1157)
T PRK11447 384 DSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQ 460 (1157)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 44556667777788888888888888877653 445556666666664 45677777777655421
Q ss_pred ------------CCCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHH
Q 039177 146 ------------RINRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVI 213 (453)
Q Consensus 146 ------------~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 213 (453)
..+++++|++.|++.+... +-+...+..+...+.+.|+. ++|...++++.+.. +.+...+..+.
T Consensus 461 ~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~--~~A~~~l~~al~~~-P~~~~~~~a~a 536 (1157)
T PRK11447 461 NDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQR--SQADALMRRLAQQK-PNDPEQVYAYG 536 (1157)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 1577778888887777642 12445666777777788877 78888887776643 33444555555
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 039177 214 RSLVKKEKVFDALGILNQMKSDGIKPDIV---------CYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYIN 284 (453)
Q Consensus 214 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---------~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 284 (453)
..+...++.++|+..++.+......++.. .+..+...+...|+.++|..+++. .+.+...+..+..
T Consensus 537 l~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~ 611 (1157)
T PRK11447 537 LYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLAD 611 (1157)
T ss_pred HHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHH
Confidence 56667788888888777765432222211 122345667788888888888772 2455667778888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH
Q 039177 285 GLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIE 364 (453)
Q Consensus 285 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 364 (453)
.+.+.|+.++|++.|+...+... .+...+..+...|...|++++|++.++.+.+.... +...+..+..++...|++++
T Consensus 612 ~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~-~~~~~~~la~~~~~~g~~~e 689 (1157)
T PRK11447 612 WAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPATAND-SLNTQRRVALAWAALGDTAA 689 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHhCCCHHH
Confidence 99999999999999999998642 25678999999999999999999999988876433 56677778889999999999
Q ss_pred HHHHHHHHHHCCC--CC---ChhhHHHHHHHHHhCCCHHHHHHHHHHHhh-CCCCCC----HHHHHHHHhchhcchhhHH
Q 039177 365 ACGLLEEALNKGL--CT---QSSMFDETICGLCQRGLVRKALELLKQMAD-KDVSPG----ARVWEALLLSSVSKLDFVN 434 (453)
Q Consensus 365 A~~~~~~m~~~~~--~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~----~~~~~~ll~a~~~~~~~~~ 434 (453)
|.++++++..... .| +...+..+...+...|+.++|+..|++... .|+.|+ ..++..+.. .....++..
T Consensus 690 A~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~~p~~~~~~~~l~~-~~~~~~~l~ 768 (1157)
T PRK11447 690 AQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPTRPQDNDTFTRLTR-NDEKDDWLK 768 (1157)
T ss_pred HHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHhc-cccCchhhh
Confidence 9999999987532 12 223566667888999999999999999763 445432 234554442 222333444
Q ss_pred HHHHHHHHhhhc
Q 039177 435 TSFIRLVDQILN 446 (453)
Q Consensus 435 ~~~~~~~~~~~~ 446 (453)
..+..++..++.
T Consensus 769 ~~v~~~~~~l~~ 780 (1157)
T PRK11447 769 RGVRSDAADLYR 780 (1157)
T ss_pred hhHHHHHHHHHh
Confidence 445555555544
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.70 E-value=1.1e-12 Score=132.77 Aligned_cols=333 Identities=13% Similarity=0.055 Sum_probs=238.7
Q ss_pred CChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC-----------
Q 039177 78 PPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFR----------- 146 (453)
Q Consensus 78 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----------- 146 (453)
.++..+..+...+...|++++|...++.+.+.. +.+.. +..+..++...|+.++|+..++++.+..
T Consensus 81 ~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la 157 (765)
T PRK10049 81 QNDDYQRGLILTLADAGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYV 157 (765)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 346677788899999999999999999999873 56677 8899999999999999999999988766
Q ss_pred -----CCcHHHHHHHHHHHHHCCCccCh------HhHHHHHHHHHhcCCCC------hHHHHHHHHHHHHc-CCCcChh-
Q 039177 147 -----INRVGFAIEILNCMINDGFCVDG------KTCSLILSSVCEQRDLS------SDELLGFVQEMKKL-GFCFGMV- 207 (453)
Q Consensus 147 -----~~~~~~a~~~~~~m~~~~~~p~~------~~~~~ll~~~~~~~~~~------~~~a~~~~~~~~~~-g~~~~~~- 207 (453)
.+..+.|+..++.... .|+. .....++.......... .++|+..++.+.+. ...|+..
T Consensus 158 ~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~ 234 (765)
T PRK10049 158 QALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATA 234 (765)
T ss_pred HHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccch
Confidence 3445555555543332 2221 01222222222111110 14577777777754 2223221
Q ss_pred hH----HHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---ChhhH
Q 039177 208 DY----TNVIRSLVKKEKVFDALGILNQMKSDGIK-PDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVP---DVYTY 279 (453)
Q Consensus 208 ~~----~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~---~~~~~ 279 (453)
.+ ...+..+...|++++|+..|+.+.+.+.. |+. .-..+...|...|++++|+.+|+.+.+..... .....
T Consensus 235 ~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~ 313 (765)
T PRK10049 235 DYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEEL 313 (765)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHH
Confidence 11 11134556779999999999999987643 332 22225778999999999999999987643111 12345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 039177 280 NVYINGLCKQNNVEAGIKMIACMEELGS-----------KPD---VITYNTLLQALCKVRELNRLRELVKEMKWKGIVLN 345 (453)
Q Consensus 280 ~~li~~~~~~~~~~~a~~~~~~m~~~~~-----------~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~ 345 (453)
..+..++.+.|++++|..+++.+..... .|+ ...+..+...+...|++++|+.+++++....+. +
T Consensus 314 ~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n 392 (765)
T PRK10049 314 ADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-N 392 (765)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C
Confidence 6667788999999999999999987531 123 235567778899999999999999999988655 7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 039177 346 LQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADKDVSPGARVWEA 421 (453)
Q Consensus 346 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 421 (453)
...+..+...+...|++++|++.+++..+.. +-+...+......+...|++++|..+++++++ ..|+......
T Consensus 393 ~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~ 465 (765)
T PRK10049 393 QGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQR 465 (765)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHH
Confidence 8899999999999999999999999998864 33455666677788999999999999999995 3555544333
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.68 E-value=8.8e-12 Score=124.41 Aligned_cols=324 Identities=12% Similarity=0.102 Sum_probs=202.6
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC----------------CC
Q 039177 85 FVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFR----------------IN 148 (453)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----------------~~ 148 (453)
.++..+...|+.++|...+++.... .+.+......+...|...|++++|+++|+++.+.+ .+
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p--~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~ 150 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSS--MNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAG 150 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcC
Confidence 6666666677777777777776622 23334444444556677777777777777766554 45
Q ss_pred cHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHH
Q 039177 149 RVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGI 228 (453)
Q Consensus 149 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 228 (453)
..++|++.++.+... .|+...+..++..+...++. .+|++.++++.+.. +.+...+..++.+..+.|-...|.++
T Consensus 151 q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~--~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l 225 (822)
T PRK14574 151 RGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRN--YDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRL 225 (822)
T ss_pred CHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchH--HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 666666666666543 34444442222222222222 45677777776664 33455556666666655554444433
Q ss_pred HHHH------------------------------------------------HhC-CCCCCH-H----HHHHHHHHHHhc
Q 039177 229 LNQM------------------------------------------------KSD-GIKPDI-V----CYTMVLNGVIVQ 254 (453)
Q Consensus 229 ~~~m------------------------------------------------~~~-~~~~~~-~----~~~~ll~~~~~~ 254 (453)
..+- ... +..|.. . +..-.+-++...
T Consensus 226 ~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r 305 (822)
T PRK14574 226 AKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVR 305 (822)
T ss_pred HHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHh
Confidence 3211 110 011111 1 111233455666
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHH
Q 039177 255 EDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELG-----SKPDVITYNTLLQALCKVRELNR 329 (453)
Q Consensus 255 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~~~~~~ 329 (453)
|+..++++.|+.+...|.+....+-.++.++|...+++++|..+|+.+.... ..++......|..+|...+++++
T Consensus 306 ~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~ 385 (822)
T PRK14574 306 HQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDK 385 (822)
T ss_pred hhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHH
Confidence 7788888888888877766566677888888888888888888888886643 12234445778888888888888
Q ss_pred HHHHHHHHHHCCC-------------CcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCC
Q 039177 330 LRELVKEMKWKGI-------------VLNLQ-TYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRG 395 (453)
Q Consensus 330 a~~~~~~~~~~~~-------------~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 395 (453)
|..+++.+.+..+ .||-. .+..++..+...|++.+|++.++++.... +-|..+...+...+...|
T Consensus 386 A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg 464 (822)
T PRK14574 386 AYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARD 464 (822)
T ss_pred HHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 8888888887321 22222 33445667788888888988888886654 557777888888888889
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHH
Q 039177 396 LVRKALELLKQMADKDVSPGARV 418 (453)
Q Consensus 396 ~~~~A~~~~~~m~~~~~~p~~~~ 418 (453)
.+.+|.+.++... .+.|+...
T Consensus 465 ~p~~A~~~~k~a~--~l~P~~~~ 485 (822)
T PRK14574 465 LPRKAEQELKAVE--SLAPRSLI 485 (822)
T ss_pred CHHHHHHHHHHHh--hhCCccHH
Confidence 9999988887766 44666433
No 22
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=2.3e-12 Score=113.00 Aligned_cols=291 Identities=13% Similarity=0.176 Sum_probs=149.2
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh---cCChhHHHHHHhhcccCC------------
Q 039177 82 AYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYAD---AHRFQDSVNLFYKIPKFR------------ 146 (453)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~------------ 146 (453)
+-+.+++ +...|.+.++.-+|+.|... |++.+..+-..|++.-+- ..-+-.-.+.|-.|.+.+
T Consensus 118 ~E~nL~k-mIS~~EvKDs~ilY~~m~~e-~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 118 TENNLLK-MISSREVKDSCILYERMRSE-NVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred chhHHHH-HHhhcccchhHHHHHHHHhc-CCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 3444544 35568888999999999887 777777776666655332 222212223444444433
Q ss_pred ------------------------CCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC
Q 039177 147 ------------------------INRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGF 202 (453)
Q Consensus 147 ------------------------~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~ 202 (453)
-...+.|.+++.+-.....+.+..+||.+|.+-.-. ...+++.+|....+
T Consensus 196 AdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~------~~K~Lv~EMisqkm 269 (625)
T KOG4422|consen 196 ADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS------VGKKLVAEMISQKM 269 (625)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh------ccHHHHHHHHHhhc
Confidence 123344444444444444444555555554433221 11334445555555
Q ss_pred CcChhhHHHHHHHHHhcCChhH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH----CCCC
Q 039177 203 CFGMVDYTNVIRSLVKKEKVFD----ALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVK-AEELFDELLV----LGLV 273 (453)
Q Consensus 203 ~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~m~~----~g~~ 273 (453)
.||..|+|+++++..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++.. ..++
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 5555555555555555554443 23444555555555555555555555555544422 2222222221 1111
Q ss_pred C----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 039177 274 P----DVYTYNVYINGLCKQNNVEAGIKMIACMEELG----SKPD---VITYNTLLQALCKVRELNRLRELVKEMKWKGI 342 (453)
Q Consensus 274 ~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 342 (453)
| |...|...+..|.+..+.+.|.++..-+.... +.|+ ...|..+....|+....+.-...|+.|.-.-+
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y 429 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY 429 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 1 33344444555555555555555544433210 1122 12345555555666666666666666665555
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 039177 343 VLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQ 380 (453)
Q Consensus 343 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 380 (453)
-|+..+...++++....|.++-.-++|..++..|....
T Consensus 430 ~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r 467 (625)
T KOG4422|consen 430 FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFR 467 (625)
T ss_pred cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhh
Confidence 56666666666666666666666666666666554333
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.66 E-value=5.7e-12 Score=128.29 Aligned_cols=324 Identities=9% Similarity=-0.035 Sum_probs=234.1
Q ss_pred ChhhHHHHHHHHHhcCCcchHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHhcCChh---HHHHHHhhcccCC----CCcH
Q 039177 79 PPEAYHFVIKTLAENSQFCDISSVLDHIEKR-ENFETPEFIFIDLIKTYADAHRFQ---DSVNLFYKIPKFR----INRV 150 (453)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~----~~~~ 150 (453)
+......+--...+.|+.++|.++++..... ..-..+..+...++..|.+.+... ++..+-..+.... .++.
T Consensus 375 ~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 454 (987)
T PRK09782 375 NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQL 454 (987)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhh
Confidence 4444445555567788888888888888762 112235667778888888888744 3433322222222 2333
Q ss_pred HHHHHHHHHHHH-CCC-cc--ChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHH
Q 039177 151 GFAIEILNCMIN-DGF-CV--DGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDAL 226 (453)
Q Consensus 151 ~~a~~~~~~m~~-~~~-~p--~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 226 (453)
.++......... .+. ++ +...|..+..++.. ++. ++|...+.+..... |+......+...+...|++++|.
T Consensus 455 ~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~--~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi 529 (987)
T PRK09782 455 PGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLP--GVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATAL 529 (987)
T ss_pred hhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCc--HHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHH
Confidence 333333333322 122 23 45667777776665 666 78998777776654 55444444455557899999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039177 227 GILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELG 306 (453)
Q Consensus 227 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 306 (453)
..|+++... .|+...+..+..++.+.|++++|...++..++.. +.+...+..+.....+.|++++|...+++..+.
T Consensus 530 ~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l- 605 (987)
T PRK09782 530 AAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI- 605 (987)
T ss_pred HHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-
Confidence 999998664 3445556677888899999999999999998864 222333333334445669999999999999985
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 039177 307 SKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDE 386 (453)
Q Consensus 307 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 386 (453)
.|+...+..+..++.+.|++++|+..++......+. +...+..+...+...|+.++|+..+++..+.. +-+...+..
T Consensus 606 -~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~n 682 (987)
T PRK09782 606 -APSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQ 682 (987)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 477888999999999999999999999999998666 77888999999999999999999999998864 345677888
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhCCCCCCH
Q 039177 387 TICGLCQRGLVRKALELLKQMADKDVSPGA 416 (453)
Q Consensus 387 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 416 (453)
+..++...|++++|...+++..+ +.|+.
T Consensus 683 LA~al~~lGd~~eA~~~l~~Al~--l~P~~ 710 (987)
T PRK09782 683 LAYVNQRLDDMAATQHYARLVID--DIDNQ 710 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh--cCCCC
Confidence 99999999999999999999984 45654
No 24
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.66 E-value=1.5e-13 Score=125.63 Aligned_cols=290 Identities=12% Similarity=0.079 Sum_probs=160.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC----------------CCcHHHHHHHHHHHHHCCCccChHhHHH-H
Q 039177 113 ETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFR----------------INRVGFAIEILNCMINDGFCVDGKTCSL-I 175 (453)
Q Consensus 113 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----------------~~~~~~a~~~~~~m~~~~~~p~~~~~~~-l 175 (453)
+.-..+|..+...+-..|++++|+..|+.+.+.+ .|+.+.|.+.|.+.++ +.|+.....+ +
T Consensus 113 ~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~l 190 (966)
T KOG4626|consen 113 PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDL 190 (966)
T ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcch
Confidence 3345688889999999999999999999887765 5777888888877775 3465554333 2
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 039177 176 LSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQE 255 (453)
Q Consensus 176 l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 255 (453)
...+...|.+ .+|...+.+..+.. +.=...|..|...+-..|++..|+..|++..+.++. =...|-.|...|...+
T Consensus 191 gnLlka~Grl--~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~ 266 (966)
T KOG4626|consen 191 GNLLKAEGRL--EEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEAR 266 (966)
T ss_pred hHHHHhhccc--chhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHh
Confidence 3333445666 66666665555543 122345777777777777777777777777654322 2334555555555555
Q ss_pred CHHHHHHHHHHHHHCC--------------------------------CCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 039177 256 DYVKAEELFDELLVLG--------------------------------LVPD-VYTYNVYINGLCKQNNVEAGIKMIACM 302 (453)
Q Consensus 256 ~~~~a~~~~~~m~~~g--------------------------------~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m 302 (453)
.++.|...|.+..... +.|+ ...|+.|..+.-..|++.+|++.|...
T Consensus 267 ~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 267 IFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred cchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 5555555555544321 1121 334455555555555555555555544
Q ss_pred HHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-
Q 039177 303 EELGSKPD-VITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQ- 380 (453)
Q Consensus 303 ~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~- 380 (453)
... .|+ ....+.|...|...|.+++|..+|....+.... -...++.|...|-+.|++++|+..+++... +.|+
T Consensus 347 L~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~f 421 (966)
T KOG4626|consen 347 LRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTF 421 (966)
T ss_pred HHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchH
Confidence 442 122 234444555555555555555555544443221 223445555555555555555555555443 2232
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCC
Q 039177 381 SSMFDETICGLCQRGLVRKALELLKQMADKDVSPG 415 (453)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 415 (453)
...|+.+-..|-..|+.+.|++.+.+.+ .+.|.
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI--~~nPt 454 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAI--QINPT 454 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHH--hcCcH
Confidence 2344555555555555555555555544 34444
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.63 E-value=4.2e-11 Score=119.60 Aligned_cols=327 Identities=12% Similarity=0.036 Sum_probs=247.5
Q ss_pred HHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC---------------CCcHH
Q 039177 87 IKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFR---------------INRVG 151 (453)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---------------~~~~~ 151 (453)
...+...|+++.|.++|+.+.+.. +.+..++..++..|.+.++.++|++.++++...+ .+...
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHH
Confidence 457777899999999999999874 5667788888999999999999999999987765 35565
Q ss_pred HHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCCh--------------------------------------------
Q 039177 152 FAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSS-------------------------------------------- 187 (453)
Q Consensus 152 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~-------------------------------------------- 187 (453)
+|++.++++.... +-+...+..+..++.+.|-...
T Consensus 187 ~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 187 DALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 6899999998753 2245556666666666665411
Q ss_pred --HHHHHHHHHHHHc-CCCcCh-h----hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 039177 188 --DELLGFVQEMKKL-GFCFGM-V----DYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVK 259 (453)
Q Consensus 188 --~~a~~~~~~~~~~-g~~~~~-~----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 259 (453)
+.++.-++.+... +-.|.. . ...-.+-++...|++.++++.|+.|...+.+....+-.++..+|...+++++
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK 345 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 1122222222221 111211 1 1224456777889999999999999998876666788899999999999999
Q ss_pred HHHHHHHHHHCC-----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC--H-HHHHHHHHH
Q 039177 260 AEELFDELLVLG-----LVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGS-----------KPD--V-ITYNTLLQA 320 (453)
Q Consensus 260 a~~~~~~m~~~g-----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----------~p~--~-~~~~~li~~ 320 (453)
|+.+|..+.... ..++......|..+|...+++++|..+++.+.+... .|+ - ..+..++..
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 999999987643 122344457899999999999999999999987321 122 2 245566788
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHH
Q 039177 321 LCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKA 400 (453)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 400 (453)
+.-.|++.+|++.++.+....+. |......+.+.+...|.+.+|.+.++...... +-+..+.......+...|++++|
T Consensus 426 ~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHH
Confidence 89999999999999999888766 99999999999999999999999997766553 34556677778888999999999
Q ss_pred HHHHHHHhhCCCCCCHHHHH
Q 039177 401 LELLKQMADKDVSPGARVWE 420 (453)
Q Consensus 401 ~~~~~~m~~~~~~p~~~~~~ 420 (453)
..+.+...+ ..|+.....
T Consensus 504 ~~~~~~l~~--~~Pe~~~~~ 521 (822)
T PRK14574 504 ELLTDDVIS--RSPEDIPSQ 521 (822)
T ss_pred HHHHHHHHh--hCCCchhHH
Confidence 999999874 356555433
No 26
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.58 E-value=1.9e-11 Score=114.34 Aligned_cols=283 Identities=8% Similarity=-0.004 Sum_probs=204.0
Q ss_pred cCCcchHHHHHHHHHHcCCCCCCHHHHHHH-HHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCccChHh
Q 039177 93 NSQFCDISSVLDHIEKRENFETPEFIFIDL-IKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCVDGKT 171 (453)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 171 (453)
.|+++.|.+......+. .+++.++..+ ..+..+.|+++.|...|.++.+ ..|+...
T Consensus 97 eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~--------------------~~~~~~~ 153 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAE--------------------LADNDQL 153 (398)
T ss_pred CCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------------------cCCcchH
Confidence 58888888777776554 2223333333 4444777888888887776332 2455543
Q ss_pred HH--HHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-------H
Q 039177 172 CS--LILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDI-------V 242 (453)
Q Consensus 172 ~~--~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~ 242 (453)
.. .....+...|+. +.|...++.+.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .
T Consensus 154 ~~~l~~a~l~l~~g~~--~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~ 230 (398)
T PRK10747 154 PVEITRVRIQLARNEN--HAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQ 230 (398)
T ss_pred HHHHHHHHHHHHCCCH--HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 33 234567778887 89999998888876 556777888899999999999999999999887655322 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 039177 243 CYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALC 322 (453)
Q Consensus 243 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 322 (453)
+|..++.......+.+...++++.+.+. .+.+......+...+...|+.++|.++++...+. .+|... .++.+..
T Consensus 231 a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l 305 (398)
T PRK10747 231 AWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRL 305 (398)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhc
Confidence 3333444444455566666777766442 2356778888888899999999999999888874 344422 2334444
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHH
Q 039177 323 KVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALE 402 (453)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 402 (453)
..++.+++.+..+...+..+. |......+...|.+.|++++|.+.|+...+. .|+...|..+...+.+.|+.++|.+
T Consensus 306 ~~~~~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~ 382 (398)
T PRK10747 306 KTNNPEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAA 382 (398)
T ss_pred cCCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 568889999999888887665 7778888899999999999999999988875 5888888888999999999999999
Q ss_pred HHHHHhh
Q 039177 403 LLKQMAD 409 (453)
Q Consensus 403 ~~~~m~~ 409 (453)
++++-..
T Consensus 383 ~~~~~l~ 389 (398)
T PRK10747 383 MRRDGLM 389 (398)
T ss_pred HHHHHHh
Confidence 8887653
No 27
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.57 E-value=3.1e-11 Score=113.57 Aligned_cols=288 Identities=8% Similarity=-0.043 Sum_probs=191.2
Q ss_pred hcCCcchHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCccChH
Q 039177 92 ENSQFCDISSVLDHIEKRENFETP-EFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCVDGK 170 (453)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 170 (453)
..|+++.|.+.+....+. .|+ ...+-....++...|+.+.|...|.+..+ . .|+..
T Consensus 96 ~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~------------------~--~p~~~ 152 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAE------------------L--AGNDN 152 (409)
T ss_pred hCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------h--CCcCc
Confidence 378888888888877665 333 33334445667777888888887776322 1 24432
Q ss_pred --hHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 039177 171 --TCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVL 248 (453)
Q Consensus 171 --~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll 248 (453)
........+...|+. +.|...++.+.+.. +-+..++..+...|.+.|++++|.+.+..+.+.++.+.......-.
T Consensus 153 l~~~~~~a~l~l~~~~~--~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~ 229 (409)
T TIGR00540 153 ILVEIARTRILLAQNEL--HAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQ 229 (409)
T ss_pred hHHHHHHHHHHHHCCCH--HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 223345666778887 88888888888876 4466778888888999999999999998888876543222211111
Q ss_pred HHH---HhcCCHHHHHHHHHHHHHCCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHH
Q 039177 249 NGV---IVQEDYVKAEELFDELLVLGL---VPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVIT---YNTLLQ 319 (453)
Q Consensus 249 ~~~---~~~g~~~~a~~~~~~m~~~g~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~li~ 319 (453)
.++ ...+..+.+.+.+..+.+... +.+...+..+...+...|+.++|.+++++..+.. ||... ......
T Consensus 230 ~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~ 307 (409)
T TIGR00540 230 KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPI 307 (409)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHh
Confidence 111 222222323334444433221 1367778888888889999999999988888753 44432 111222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCH
Q 039177 320 ALCKVRELNRLRELVKEMKWKGIVLNL--QTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLV 397 (453)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 397 (453)
.....++.+.+.+.++...+.... |. ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.
T Consensus 308 ~~l~~~~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~ 386 (409)
T TIGR00540 308 PRLKPEDNEKLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDK 386 (409)
T ss_pred hhcCCCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCH
Confidence 223456778888888877776433 44 566788888888999999999888644444567888888888888899999
Q ss_pred HHHHHHHHHHh
Q 039177 398 RKALELLKQMA 408 (453)
Q Consensus 398 ~~A~~~~~~m~ 408 (453)
++|.+++++..
T Consensus 387 ~~A~~~~~~~l 397 (409)
T TIGR00540 387 AEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHHH
Confidence 99988888754
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.56 E-value=8.7e-11 Score=119.82 Aligned_cols=290 Identities=14% Similarity=0.015 Sum_probs=215.5
Q ss_pred cCCcchHHHHHHHHHHcCCC-CC--CHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCccCh
Q 039177 93 NSQFCDISSVLDHIEKRENF-ET--PEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCVDG 169 (453)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 169 (453)
.|++.++....+.+...-+. ++ +...|..+..++.. +++++|+..|.+... ..|+.
T Consensus 451 ~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~--------------------~~Pd~ 509 (987)
T PRK09782 451 QSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQ--------------------RQPDA 509 (987)
T ss_pred HhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHH--------------------hCCch
Confidence 55555555555555443222 44 67788888888877 788888887765322 23665
Q ss_pred HhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 039177 170 KTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLN 249 (453)
Q Consensus 170 ~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 249 (453)
.....+...+...|+. ++|...|+.+... +|+...+..+...+.+.|++++|...++...+.... +...+..+..
T Consensus 510 ~~~L~lA~al~~~Gr~--eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~ 584 (987)
T PRK09782 510 WQHRAVAYQAYQVEDY--ATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHA 584 (987)
T ss_pred HHHHHHHHHHHHCCCH--HHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHH
Confidence 5444445555688998 9999999987654 455566778888999999999999999999886532 3333334444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHH
Q 039177 250 GVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKP-DVITYNTLLQALCKVRELN 328 (453)
Q Consensus 250 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~ 328 (453)
.....|++++|...+++.++.. |+...+..+..++.+.|+.++|...++...+.. | +...++.+..++...|+++
T Consensus 585 ~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~--Pd~~~a~~nLG~aL~~~G~~e 660 (987)
T PRK09782 585 QRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE--PNNSNYQAALGYALWDSGDIA 660 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHH
Confidence 4556699999999999998854 678889999999999999999999999999864 4 4567888888999999999
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhCCCHHHHHHHHHHH
Q 039177 329 RLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQS-SMFDETICGLCQRGLVRKALELLKQM 407 (453)
Q Consensus 329 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m 407 (453)
+|+..++...+..+. +...+..+..++...|++++|...|++..+.. |+. .+.........+..+++.|.+-+++-
T Consensus 661 eAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~--P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~ 737 (987)
T PRK09782 661 QSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVIDDI--DNQALITPLTPEQNQQRFNFRRLHEEVGRR 737 (987)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999998665 77889999999999999999999999998764 444 33334444555566677777766665
Q ss_pred hhCCCCCCHH
Q 039177 408 ADKDVSPGAR 417 (453)
Q Consensus 408 ~~~~~~p~~~ 417 (453)
. .+.|+..
T Consensus 738 ~--~~~~~~~ 745 (987)
T PRK09782 738 W--TFSFDSS 745 (987)
T ss_pred h--hcCccch
Confidence 4 3444443
No 29
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.56 E-value=3.3e-14 Score=127.03 Aligned_cols=220 Identities=19% Similarity=0.136 Sum_probs=80.1
Q ss_pred HHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 039177 178 SVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDY 257 (453)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 257 (453)
.+...++. +.|...++++...+ +-+...+..++.. ...+++++|.++++...+.. ++...+..++..+...+++
T Consensus 53 La~~~~~~--~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~ 126 (280)
T PF13429_consen 53 LAWSLGDY--DEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDY 126 (280)
T ss_dssp -----------------------------------------------------------------------H-HHHTT-H
T ss_pred cccccccc--cccccccccccccc-ccccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHH
Confidence 33444555 56666666665544 1234445555555 56666666666665554432 3444555566666666666
Q ss_pred HHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 039177 258 VKAEELFDELLVLG-LVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPD-VITYNTLLQALCKVRELNRLRELVK 335 (453)
Q Consensus 258 ~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~ 335 (453)
+++.++++.+.... ...+...|..+...+.+.|+.++|.+.+++..+.. |+ ......++..+...|+.+++..++.
T Consensus 127 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~ 204 (280)
T PF13429_consen 127 DEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD--PDDPDARNALAWLLIDMGDYDEAREALK 204 (280)
T ss_dssp HHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 66666666655422 23455556666666666666666666666666643 43 4456666666666666666666666
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 039177 336 EMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQM 407 (453)
Q Consensus 336 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (453)
...+.. ..|...+..+..+|...|+.++|...|++..... +.|......+..++...|+.++|.++.++.
T Consensus 205 ~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 205 RLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred HHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 655543 2244455666666666666666766666665543 335555666666666666666666665554
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.56 E-value=3.9e-14 Score=126.51 Aligned_cols=243 Identities=12% Similarity=0.041 Sum_probs=89.4
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHcC-CCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 039177 174 LILSSVCEQRDLSSDELLGFVQEMKKLG-FCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVI 252 (453)
Q Consensus 174 ~ll~~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 252 (453)
.+...+.+.|++ ++|.+++....... .+.+...|..+...+...++++.|++.++++...+.. +...+..++.. .
T Consensus 13 ~~A~~~~~~~~~--~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~ 88 (280)
T PF13429_consen 13 RLARLLYQRGDY--EKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-c
Confidence 345556666776 77777774433332 2334455556666666777788888888777765443 45556666665 5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHH
Q 039177 253 VQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELG-SKPDVITYNTLLQALCKVRELNRLR 331 (453)
Q Consensus 253 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~ 331 (453)
..+++++|.+++....+.. ++...+..++..+.+.++++++.++++.+.... ...+...|..+...+.+.|+.++|+
T Consensus 89 ~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred ccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777776655432 455666677777777788888877777766432 2345667777777777788888888
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCC
Q 039177 332 ELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADKD 411 (453)
Q Consensus 332 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 411 (453)
+.++...+..+. |......++..+...|+.+++.+++....+.. ..+...+..+..+|...|+.++|+.+|++..+
T Consensus 167 ~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~-- 242 (280)
T PF13429_consen 167 RDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALK-- 242 (280)
T ss_dssp HHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH--
T ss_pred HHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccc--
Confidence 888877776544 56677777777777787777777777766553 34455666777777777888888888887764
Q ss_pred CCCC-HHHHHHHHhch
Q 039177 412 VSPG-ARVWEALLLSS 426 (453)
Q Consensus 412 ~~p~-~~~~~~ll~a~ 426 (453)
..|+ ..+...+-.++
T Consensus 243 ~~p~d~~~~~~~a~~l 258 (280)
T PF13429_consen 243 LNPDDPLWLLAYADAL 258 (280)
T ss_dssp HSTT-HHHHHHHHHHH
T ss_pred cccccccccccccccc
Confidence 3453 33333444443
No 31
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=5.3e-12 Score=116.89 Aligned_cols=286 Identities=14% Similarity=0.086 Sum_probs=221.7
Q ss_pred CCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCccChHhHH
Q 039177 94 SQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCVDGKTCS 173 (453)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 173 (453)
-+..+|..+|..+... +.-..++..-+..+|...+++++|.++|+.+.+.. .-..-+..+|.
T Consensus 333 y~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~----------------p~rv~~meiyS 394 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIE----------------PYRVKGMEIYS 394 (638)
T ss_pred HHHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------------cccccchhHHH
Confidence 3446788888886654 24445788888999999999999999998855421 01112667888
Q ss_pred HHHHHHHhcCCCChHHHHHHH-HHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 039177 174 LILSSVCEQRDLSSDELLGFV-QEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVI 252 (453)
Q Consensus 174 ~ll~~~~~~~~~~~~~a~~~~-~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 252 (453)
+.|..+-+. -++..+ +.+.+.. +-...+|.++.++|.-+++.+.|++.|++..+.+.. ...+|+.+..-+.
T Consensus 395 T~LWHLq~~------v~Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~ 466 (638)
T KOG1126|consen 395 TTLWHLQDE------VALSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESI 466 (638)
T ss_pred HHHHHHHhh------HHHHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhh
Confidence 888765432 223333 3333332 567899999999999999999999999999986443 7889999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHH---HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 039177 253 VQEDYVKAEELFDELLVLGLVPDVYTYNV---YINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNR 329 (453)
Q Consensus 253 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 329 (453)
....+|.|...|+..+. .|...|++ +...|.+.++++.|+-.|+...+.+.. +.+....+...+-+.|+.|+
T Consensus 467 ~~ee~d~a~~~fr~Al~----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~ 541 (638)
T KOG1126|consen 467 ATEEFDKAMKSFRKALG----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDK 541 (638)
T ss_pred hhHHHHhHHHHHHhhhc----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhH
Confidence 99999999999998875 45555554 667799999999999999999985532 56677888889999999999
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhCCCHHHHHHHHHHHh
Q 039177 330 LRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQS-SMFDETICGLCQRGLVRKALELLKQMA 408 (453)
Q Consensus 330 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (453)
|++++++....+.+ |+-.--.-+..+...++.++|+..++++++. .|+. ..|..+...|.+.|+.+.|+.-|..+.
T Consensus 542 AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 542 ALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWAL 618 (638)
T ss_pred HHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHh
Confidence 99999999988766 5555555667777889999999999999874 5554 557778889999999999999999988
Q ss_pred hCCCC
Q 039177 409 DKDVS 413 (453)
Q Consensus 409 ~~~~~ 413 (453)
+.+-+
T Consensus 619 ~ldpk 623 (638)
T KOG1126|consen 619 DLDPK 623 (638)
T ss_pred cCCCc
Confidence 54333
No 32
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=8.2e-11 Score=99.80 Aligned_cols=252 Identities=12% Similarity=0.050 Sum_probs=196.6
Q ss_pred hHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcCh------hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 039177 169 GKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGM------VDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIV 242 (453)
Q Consensus 169 ~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 242 (453)
..+-.+|.+.+.+.|.. +.|+.+++.+.+. ||. .....|..-|...|-+|.|+++|..+.+.+.- -..
T Consensus 69 ~e~~ltLGnLfRsRGEv--DRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef-a~~ 142 (389)
T COG2956 69 FEAHLTLGNLFRSRGEV--DRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF-AEG 142 (389)
T ss_pred hHHHHHHHHHHHhcchH--HHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh-hHH
Confidence 34556788888999999 9999999998875 332 34567788899999999999999999986432 455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 039177 243 CYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDV----YTYNVYINGLCKQNNVEAGIKMIACMEELGSKPD-VITYNTL 317 (453)
Q Consensus 243 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l 317 (453)
....|+..|-...+|++|+++-+++.+.+-++.. ..|.-+...+....+.+.|..+++...+.+ |+ +..-..+
T Consensus 143 AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~l 220 (389)
T COG2956 143 ALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD--KKCVRASIIL 220 (389)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhh
Confidence 7788999999999999999999999886644432 234555666667789999999999988854 43 3344456
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCH
Q 039177 318 LQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLV 397 (453)
Q Consensus 318 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 397 (453)
.+.+...|+++.|.+.|+.+.+.+...-..+...|..+|.+.|+.++...++..+.+... ....-..+........-.
T Consensus 221 G~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g~~~~l~l~~lie~~~G~ 298 (389)
T COG2956 221 GRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--GADAELMLADLIELQEGI 298 (389)
T ss_pred hHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--CccHHHHHHHHHHHhhCh
Confidence 688999999999999999999997766677889999999999999999999999988643 333333344444455567
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHhchhcchhh
Q 039177 398 RKALELLKQMADKDVSPGARVWEALLLSSVSKLDF 432 (453)
Q Consensus 398 ~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~~~~ 432 (453)
+.|..++.+-.. -+|+...+..|+..-....++
T Consensus 299 ~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daee 331 (389)
T COG2956 299 DAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEE 331 (389)
T ss_pred HHHHHHHHHHHh--hCCcHHHHHHHHHhhhccccc
Confidence 777777777664 489999999999987666665
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=4.4e-11 Score=105.83 Aligned_cols=333 Identities=13% Similarity=0.053 Sum_probs=219.7
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC---------------
Q 039177 82 AYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFR--------------- 146 (453)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------------- 146 (453)
..+.+.-.+.+.|.+++|+..|++.... .|+..+--.|+-++..-|+-++..+.|.++....
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~---~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp 354 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEE---APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDP 354 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHh---CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCc
Confidence 4555556678899999999999999876 6887777778888888899999999998876533
Q ss_pred -CCcHHHHH--HHHHHHHH------------------CCCccChH-----hHH----------------HHHHHHHhcCC
Q 039177 147 -INRVGFAI--EILNCMIN------------------DGFCVDGK-----TCS----------------LILSSVCEQRD 184 (453)
Q Consensus 147 -~~~~~~a~--~~~~~m~~------------------~~~~p~~~-----~~~----------------~ll~~~~~~~~ 184 (453)
...+.+++ ..+..|.+ .-+.||-. +.. .-...+.+.|+
T Consensus 355 ~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d 434 (840)
T KOG2003|consen 355 DDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGD 434 (840)
T ss_pred chHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccC
Confidence 00000000 00111110 00111110 000 01112445566
Q ss_pred CChHHHHHHHHHHHHcCCCcChhh-------------------------------HH-----HHHHHHHhcCChhHHHHH
Q 039177 185 LSSDELLGFVQEMKKLGFCFGMVD-------------------------------YT-----NVIRSLVKKEKVFDALGI 228 (453)
Q Consensus 185 ~~~~~a~~~~~~~~~~g~~~~~~~-------------------------------~~-----~li~~~~~~g~~~~a~~~ 228 (453)
+ +.|.+++.-+.+..-+.-... || .-.+....+|++++|.+.
T Consensus 435 ~--~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ 512 (840)
T KOG2003|consen 435 I--EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEF 512 (840)
T ss_pred H--HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHH
Confidence 6 666666555444321111111 11 111112246889999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 039177 229 LNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSK 308 (453)
Q Consensus 229 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 308 (453)
|++.....-.-....|+. .-.+-..|++++|++.|-.+... +..+..+...+.+.|-...+..+|++++.+.... +.
T Consensus 513 ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip 589 (840)
T KOG2003|consen 513 YKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IP 589 (840)
T ss_pred HHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CC
Confidence 998887532222223332 22456778999999998776432 1245667777888899999999999998877653 44
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 039177 309 PDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETI 388 (453)
Q Consensus 309 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 388 (453)
.|+...+-|...|-+.|+-.+|.+.+.+--+. +..+..+..=|..-|....-+++|+.+|++..- +.|+..-|..+|
T Consensus 590 ~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmi 666 (840)
T KOG2003|consen 590 NDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMI 666 (840)
T ss_pred CCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHH
Confidence 57789999999999999999999988766554 334777777788888888889999999998754 689999999888
Q ss_pred HHH-HhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHhch
Q 039177 389 CGL-CQRGLVRKALELLKQMADKDVSPGARVWEALLLSS 426 (453)
Q Consensus 389 ~~~-~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~ 426 (453)
..| .+.|++.+|++++++... .+.-|...+.-|+..|
T Consensus 667 asc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~ 704 (840)
T KOG2003|consen 667 ASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIA 704 (840)
T ss_pred HHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHh
Confidence 665 567999999999999765 3666777777777665
No 34
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.51 E-value=1.8e-10 Score=107.90 Aligned_cols=272 Identities=6% Similarity=-0.019 Sum_probs=198.0
Q ss_pred CCcHHHHHHHHHHHHHCCCccChHh-HHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHH--HHHHHHHhcCChh
Q 039177 147 INRVGFAIEILNCMINDGFCVDGKT-CSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYT--NVIRSLVKKEKVF 223 (453)
Q Consensus 147 ~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~li~~~~~~g~~~ 223 (453)
.|+++.|.+.+....... +++.. |.....+..+.|+. +.+.+.+.++.+.. |+..... .....+...|+++
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~--~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~ 170 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDE--ARANQHLERAAELA--DNDQLPVEITRVRIQLARNENH 170 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHH
Confidence 455555555544433321 12222 33334444788887 99999999998754 5543332 4467899999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-------hhHHHHHHHHHhcCCHHHHH
Q 039177 224 DALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDV-------YTYNVYINGLCKQNNVEAGI 296 (453)
Q Consensus 224 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~~~~~~a~ 296 (453)
.|.+.++++.+..+. +......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...
T Consensus 171 ~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 171 AARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999999988755 7888999999999999999999999999987754322 12333344444455566666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039177 297 KMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKG 376 (453)
Q Consensus 297 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 376 (453)
++++.+.+. .+.+......+...+...|+.++|.+++.+..+. .|+... .++.+....++.+++.+..+...+..
T Consensus 250 ~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 250 RWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC
Confidence 777666443 2347778899999999999999999999999885 334422 23444456699999999999998764
Q ss_pred CCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHhchhcchhhH
Q 039177 377 LCTQSSMFDETICGLCQRGLVRKALELLKQMADKDVSPGARVWEALLLSSVSKLDFV 433 (453)
Q Consensus 377 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~~~~~ 433 (453)
+-|...+..+...+.+.|++++|.+.|+... ...|+..++..+-..+...++..
T Consensus 325 -P~~~~l~l~lgrl~~~~~~~~~A~~~le~al--~~~P~~~~~~~La~~~~~~g~~~ 378 (398)
T PRK10747 325 -GDTPLLWSTLGQLLMKHGEWQEASLAFRAAL--KQRPDAYDYAWLADALDRLHKPE 378 (398)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHcCCHH
Confidence 4455668888999999999999999999999 45799999887777665444433
No 35
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=7.8e-11 Score=104.59 Aligned_cols=292 Identities=12% Similarity=0.023 Sum_probs=208.9
Q ss_pred HHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCc-
Q 039177 88 KTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFC- 166 (453)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~- 166 (453)
.++......+++..=.+..... |++-+..+-+-...+.-...+++.|+.+|+++.+.+ ...
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~-gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-----------------PYRl 296 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSV-GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-----------------PYRL 296 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-----------------CCcc
Confidence 3444444555666656666555 676666666666666666677777777777754421 111
Q ss_pred cChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 039177 167 VDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTM 246 (453)
Q Consensus 167 p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 246 (453)
-|..+|+.+|-.--....+ ..+.+-.-.-.+--..|+..+.+-|.-.++.++|+..|++..+.+.. ....|+.
T Consensus 297 ~dmdlySN~LYv~~~~skL------s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTL 369 (559)
T KOG1155|consen 297 DDMDLYSNVLYVKNDKSKL------SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTL 369 (559)
T ss_pred hhHHHHhHHHHHHhhhHHH------HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHH
Confidence 1566888777543322222 22222111111344677788888888899999999999999987655 6778998
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 039177 247 VLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKP-DVITYNTLLQALCKVR 325 (453)
Q Consensus 247 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~ 325 (453)
+..-|....+...|.+-++..++-. +.|-..|-.+..+|.-.+.+.-|+-.|++..+. +| |...|.+|.++|.+.+
T Consensus 370 mGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~ 446 (559)
T KOG1155|consen 370 MGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLN 446 (559)
T ss_pred hhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhc
Confidence 9999999999999999999998864 467888999999999999999999999988874 44 6779999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCChhhH--HHHHHHHHhCCCHHH
Q 039177 326 ELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNK----GLCTQSSMF--DETICGLCQRGLVRK 399 (453)
Q Consensus 326 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~--~~li~~~~~~g~~~~ 399 (453)
+.++|++.|......|-. +...+..|.+.|-+.++.++|.+.|++..+. |...+.... .-|..-+.+.+++++
T Consensus 447 ~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~ 525 (559)
T KOG1155|consen 447 RLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDE 525 (559)
T ss_pred cHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHH
Confidence 999999999998887644 6678899999999999999999998877652 433332222 224455677788888
Q ss_pred HHHHHHHHh
Q 039177 400 ALELLKQMA 408 (453)
Q Consensus 400 A~~~~~~m~ 408 (453)
|..+.....
T Consensus 526 As~Ya~~~~ 534 (559)
T KOG1155|consen 526 ASYYATLVL 534 (559)
T ss_pred HHHHHHHHh
Confidence 876655544
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=2.6e-10 Score=101.36 Aligned_cols=164 Identities=12% Similarity=0.023 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 039177 242 VCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQAL 321 (453)
Q Consensus 242 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 321 (453)
.|...+.+-|+-.++.++|...|++.++.+ +.....|+.+..-|....+...|.+-++..++... .|-..|-.|.++|
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p-~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP-RDYRAWYGLGQAY 408 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc-hhHHHHhhhhHHH
Confidence 344555566777788999999999999865 34577899999999999999999999999998542 3778999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHH
Q 039177 322 CKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKAL 401 (453)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 401 (453)
.-.+...-|+-.|++..+-.+. |...|.+|.++|.+.++.++|++.|......| ..+...+..|...|-+.++.++|.
T Consensus 409 eim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred HHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999987655 88999999999999999999999999998876 346678999999999999999999
Q ss_pred HHHHHHhh
Q 039177 402 ELLKQMAD 409 (453)
Q Consensus 402 ~~~~~m~~ 409 (453)
..|++..+
T Consensus 487 ~~yek~v~ 494 (559)
T KOG1155|consen 487 QYYEKYVE 494 (559)
T ss_pred HHHHHHHH
Confidence 99888765
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.48 E-value=6.9e-10 Score=104.47 Aligned_cols=290 Identities=9% Similarity=-0.030 Sum_probs=199.8
Q ss_pred CCCcHHHHHHHHHHHHHCCCccChH-hHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcCh--hhHHHHHHHHHhcCCh
Q 039177 146 RINRVGFAIEILNCMINDGFCVDGK-TCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGM--VDYTNVIRSLVKKEKV 222 (453)
Q Consensus 146 ~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~ 222 (453)
..|+++.|.+.+....+. .|+.. .+-....+....|+. +.+.+.+.+..+.. |+. ...-.....+...|++
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~--~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDE--ARANQHLEEAAELA--GNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCH
Confidence 356666666666555543 35433 334445667777888 99999999987654 443 3444468888999999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH---HhcCCHHHHHHHH
Q 039177 223 FDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGL---CKQNNVEAGIKMI 299 (453)
Q Consensus 223 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~---~~~~~~~~a~~~~ 299 (453)
+.|.+.++.+.+..+. +...+..+...+...|++++|.+.+..+.+.+..++......-..++ ...+..+++.+.+
T Consensus 170 ~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 170 HAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999998655 77788899999999999999999999999987543332222222222 2333333344455
Q ss_pred HHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 300 ACMEELGS---KPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTY-SIMIDGLASKGDIIEACGLLEEALNK 375 (453)
Q Consensus 300 ~~m~~~~~---~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~ 375 (453)
..+.+... +.+...+..+...+...|+.++|.+++++..+.........+ ..........++.+.+.+.++...+.
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 55554321 137788999999999999999999999999997544222111 12222234457888999999888765
Q ss_pred CCCCCh--hhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHhchh--cchhhHHHHHHHHHHh
Q 039177 376 GLCTQS--SMFDETICGLCQRGLVRKALELLKQMADKDVSPGARVWEALLLSSV--SKLDFVNTSFIRLVDQ 443 (453)
Q Consensus 376 ~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~--~~~~~~~~~~~~~~~~ 443 (453)
. +-+. ....++...+.+.|++++|.+.|+........|+...+..+-..+. ++.+.+.+.+.+-...
T Consensus 329 ~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 329 V-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred C-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3 2233 4566888899999999999999996444466899988887766664 4444444555554443
No 38
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.45 E-value=3.4e-09 Score=92.90 Aligned_cols=294 Identities=12% Similarity=0.013 Sum_probs=209.0
Q ss_pred HHHHHHh--cCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHC
Q 039177 86 VIKTLAE--NSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMIND 163 (453)
Q Consensus 86 ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 163 (453)
+..++.+ .|++..|+++...-.+.. +-....|..-.++.-..|+.+.|-..+.++.+ .
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae------------------~ 147 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAE------------------L 147 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhc------------------c
Confidence 3444443 688888888888866552 23334455555666677888887777766433 1
Q ss_pred CCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH--
Q 039177 164 GFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDI-- 241 (453)
Q Consensus 164 ~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-- 241 (453)
.-.++...+.+........|+. ..|..-.+++.+.+ +-+..+......+|.+.|++.....++..|.+.|.--|.
T Consensus 148 ~~~~~l~v~ltrarlll~~~d~--~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~ 224 (400)
T COG3071 148 AGDDTLAVELTRARLLLNRRDY--PAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA 224 (400)
T ss_pred CCCchHHHHHHHHHHHHhCCCc--hhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH
Confidence 1133444555666667778887 78888888887776 456777888889999999999999999999888765444
Q ss_pred -----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 039177 242 -----VCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNT 316 (453)
Q Consensus 242 -----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 316 (453)
.+|..++.-....+..+.-...|+..... .+.++..-.+++.-+.++|+.++|.++.++..+.+..|. -.
T Consensus 225 ~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~ 299 (400)
T COG3071 225 ARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LC 299 (400)
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HH
Confidence 36777777766666666666677766442 234566667788888899999999999988888776555 12
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCC
Q 039177 317 LLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGL 396 (453)
Q Consensus 317 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 396 (453)
..-.+.+-++...-++..+.-.+.... ++..+..|...|.+.+.+.+|...|+...+. .|+..+|+.+..+|.+.|+
T Consensus 300 ~~~~~l~~~d~~~l~k~~e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~ 376 (400)
T COG3071 300 RLIPRLRPGDPEPLIKAAEKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGE 376 (400)
T ss_pred HHHhhcCCCCchHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCC
Confidence 223445667777777776666655333 4578888889999999999999999866654 6788889999999999999
Q ss_pred HHHHHHHHHHHhhC
Q 039177 397 VRKALELLKQMADK 410 (453)
Q Consensus 397 ~~~A~~~~~~m~~~ 410 (453)
..+|.++.++....
T Consensus 377 ~~~A~~~r~e~L~~ 390 (400)
T COG3071 377 PEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999888886643
No 39
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.45 E-value=2e-09 Score=103.39 Aligned_cols=314 Identities=14% Similarity=0.056 Sum_probs=231.9
Q ss_pred HHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC----------------CCcHH
Q 039177 88 KTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFR----------------INRVG 151 (453)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----------------~~~~~ 151 (453)
+.+...|++++|.+++..+.+.. +.+...|-.|...|-..|+.+++...+-.....+ .|.++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHH
Confidence 34444599999999999999885 6678899999999999999999988775443332 67788
Q ss_pred HHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhH----HHHHHHHHhcCChhHHHH
Q 039177 152 FAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDY----TNVIRSLVKKEKVFDALG 227 (453)
Q Consensus 152 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~----~~li~~~~~~g~~~~a~~ 227 (453)
+|.-.|.+.++.. +++-..+-.-...|-+.|+. ..|..-|.++.....+.|..-. -.+++.|...++-+.|.+
T Consensus 225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~--~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDL--KRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChH--HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 8888888887642 33444445556678888988 8999999888887532232222 344566777788888988
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---------------------------ChhhH
Q 039177 228 ILNQMKSD-GIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVP---------------------------DVYTY 279 (453)
Q Consensus 228 ~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~---------------------------~~~~~ 279 (453)
.++..... +-..+...++.++..+.+...++.|......+.....++ +...+
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 88887763 223356678889999999999999998888776622212 22221
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 039177 280 NVYINGLCKQNNVEAGIKMIACMEELGSKP--DVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLA 357 (453)
Q Consensus 280 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 357 (453)
-++-+.......+...-+...+.+....| +...|.-+..+|...|++.+|+.+|..+......-+...|-.+..+|.
T Consensus 382 -rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 382 -RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred -hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 12223444444555555555555555333 456889999999999999999999999998855557889999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHh
Q 039177 358 SKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMA 408 (453)
Q Consensus 358 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (453)
..|..++|.+.+++..... +.+...-..|...+.+.|+.++|.+.+..+.
T Consensus 461 ~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999998763 3344455667778899999999999999964
No 40
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.45 E-value=2.3e-11 Score=115.81 Aligned_cols=89 Identities=16% Similarity=0.203 Sum_probs=79.8
Q ss_pred HHHHHhhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccC
Q 039177 66 SLLHSFSIYNCEPPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKF 145 (453)
Q Consensus 66 ~ll~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 145 (453)
.++..+...|+.|+..||..+|.-||..|+.+.|- +|..|... ..+.+..+++.++.....+++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~k-sLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIK-SLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcc-cccccchhHHHHHhcccccccccCCC---------
Confidence 56777889999999999999999999999999998 99999877 67888899999999999999877653
Q ss_pred CCCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCC
Q 039177 146 RINRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDL 185 (453)
Q Consensus 146 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 185 (453)
.|-..||..|+.+|...|++
T Consensus 80 --------------------ep~aDtyt~Ll~ayr~hGDl 99 (1088)
T KOG4318|consen 80 --------------------EPLADTYTNLLKAYRIHGDL 99 (1088)
T ss_pred --------------------CCchhHHHHHHHHHHhccch
Confidence 47888999999999999998
No 41
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.44 E-value=6.8e-10 Score=107.26 Aligned_cols=344 Identities=13% Similarity=0.044 Sum_probs=215.8
Q ss_pred hhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHhhcccCCCC----------
Q 039177 80 PEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETP-EFIFIDLIKTYADAHRFQDSVNLFYKIPKFRIN---------- 148 (453)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---------- 148 (453)
...|=.+.+++-..|+++.|...|-...+.. +.+ +..+--|..+|.+.|+.+.+...|+.+.+...+
T Consensus 307 aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~ 384 (1018)
T KOG2002|consen 307 AESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGC 384 (1018)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 3456678899999999999999998887663 222 445566889999999999999999987765511
Q ss_pred ----------cHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHH----HHHcCCCcChhhHHHHHH
Q 039177 149 ----------RVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQE----MKKLGFCFGMVDYTNVIR 214 (453)
Q Consensus 149 ----------~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~----~~~~g~~~~~~~~~~li~ 214 (453)
..+.|..++......- +-|...|..+-..+-...- ...+.++.. +...+-.+.+...|.+..
T Consensus 385 Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~---~~sL~~~~~A~d~L~~~~~~ip~E~LNNvas 460 (1018)
T KOG2002|consen 385 LYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP---WASLDAYGNALDILESKGKQIPPEVLNNVAS 460 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh---HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHH
Confidence 2244444444444322 3355566666555544433 333555543 334455577788888888
Q ss_pred HHHhcCChhHHHHHHHHHHhC---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------------
Q 039177 215 SLVKKEKVFDALGILNQMKSD---GIKPDI------VCYTMVLNGVIVQEDYVKAEELFDELLVLG-------------- 271 (453)
Q Consensus 215 ~~~~~g~~~~a~~~~~~m~~~---~~~~~~------~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-------------- 271 (453)
.+...|++.+|...|...... ...+|. .+--.+....-..++.+.|.+.|..+.+..
T Consensus 461 lhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma 540 (1018)
T KOG2002|consen 461 LHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMA 540 (1018)
T ss_pred HHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHH
Confidence 888888888888888877654 122233 222234444445556666666665554431
Q ss_pred -------------------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh--------
Q 039177 272 -------------------LVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELG-SKPDVITYNTLLQALCK-------- 323 (453)
Q Consensus 272 -------------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~-------- 323 (453)
...++..++.+...|.+...+..|.+-|..+.+.- ..+|..+.-.|.+.|.+
T Consensus 541 ~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn 620 (1018)
T KOG2002|consen 541 RDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRN 620 (1018)
T ss_pred HhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccC
Confidence 02233444444445555555555555444433221 12455555555555432
Q ss_pred ----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHH
Q 039177 324 ----VRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRK 399 (453)
Q Consensus 324 ----~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 399 (453)
.+..++|+++|..+++..+. |...-|-+.-.++..|++.+|..+|....+... -+..+|-.+...|..+|++..
T Consensus 621 ~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~ 698 (1018)
T KOG2002|consen 621 PEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRL 698 (1018)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHH
Confidence 24567788888888887666 777777888888888888888888888877642 244456677888888888888
Q ss_pred HHHHHHHHhh-CCCCCCHHHHHHHHhchhcchh
Q 039177 400 ALELLKQMAD-KDVSPGARVWEALLLSSVSKLD 431 (453)
Q Consensus 400 A~~~~~~m~~-~~~~p~~~~~~~ll~a~~~~~~ 431 (453)
|+++|+...+ ..-.-+......|-.++...+.
T Consensus 699 AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~ 731 (1018)
T KOG2002|consen 699 AIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK 731 (1018)
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh
Confidence 8888888655 3434456666666666544333
No 42
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=5e-10 Score=95.14 Aligned_cols=223 Identities=18% Similarity=0.166 Sum_probs=183.8
Q ss_pred HHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHH
Q 039177 188 DELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDI------VCYTMVLNGVIVQEDYVKAE 261 (453)
Q Consensus 188 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~------~~~~~ll~~~~~~g~~~~a~ 261 (453)
++|.+.|-+|.+.. +.+..+.-+|.+.|.+.|..|.|+++.+.+.+. ||. .....|..-|...|-+|.|+
T Consensus 52 dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 52 DKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred chHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 78999999998854 455667789999999999999999999999874 332 24445677888999999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039177 262 ELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDV----ITYNTLLQALCKVRELNRLRELVKEM 337 (453)
Q Consensus 262 ~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~ 337 (453)
.+|..+.+.+ ..-......++..|-...++++|+++-+++.+.+-.+.. ..|.-|...+....+.+.|..++...
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 9999998865 345677788999999999999999999999987655442 35677777777888999999999999
Q ss_pred HHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCH
Q 039177 338 KWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADKDVSPGA 416 (453)
Q Consensus 338 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 416 (453)
.+.+.+ ++..--.+.+.+...|++..|.+.++.+.+.+...-..+...|..+|.+.|+.++...++..+.+..-.++.
T Consensus 207 lqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~ 284 (389)
T COG2956 207 LQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA 284 (389)
T ss_pred HhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH
Confidence 988655 555556677889999999999999999999876666778888999999999999999999998865444443
No 43
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.43 E-value=2.7e-10 Score=98.85 Aligned_cols=202 Identities=14% Similarity=0.036 Sum_probs=160.1
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 039177 204 FGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYI 283 (453)
Q Consensus 204 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 283 (453)
.....+..+...|...|++++|.+.+++..+.... +...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 34566788888999999999999999988876433 56778888888999999999999999888754 34556777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH
Q 039177 284 NGLCKQNNVEAGIKMIACMEELGSKP-DVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDI 362 (453)
Q Consensus 284 ~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 362 (453)
..+...|++++|.+.++...+....+ ....+..+...+...|++++|...+....+.... +...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCH
Confidence 88899999999999999888743222 3456777788889999999999999998887544 566788888899999999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 039177 363 IEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMAD 409 (453)
Q Consensus 363 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (453)
++|...+++..+. ...+...+..+...+...|+.++|..+.+.+..
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999988776 234556666777888888999999988887763
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=1e-10 Score=108.52 Aligned_cols=260 Identities=15% Similarity=0.078 Sum_probs=198.4
Q ss_pred HHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcC--CCcChhhHHHHHHHHHhcCChhHHHH
Q 039177 150 VGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLG--FCFGMVDYTNVIRSLVKKEKVFDALG 227 (453)
Q Consensus 150 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~ 227 (453)
..+|+..|.... ..+.-+.++...+.++|-..++. +++.++|+.+.+.. ..-+..+|.+.+.-+-+.-. +.
T Consensus 335 ~~~A~~~~~klp-~h~~nt~wvl~q~GrayFEl~~Y--~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~----Ls 407 (638)
T KOG1126|consen 335 CREALNLFEKLP-SHHYNTGWVLSQLGRAYFELIEY--DQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVA----LS 407 (638)
T ss_pred HHHHHHHHHhhH-HhcCCchHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHH----HH
Confidence 455666666633 23344557788899999999999 99999999998764 12356778777766543322 22
Q ss_pred HH-HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 228 IL-NQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVP-DVYTYNVYINGLCKQNNVEAGIKMIACMEEL 305 (453)
Q Consensus 228 ~~-~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 305 (453)
++ +++.+.. +-...+|-++.++|.-.++.+.|++.|++..+.. | ...+|+.+..-+.....+|.|...|+..+..
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 22 2222222 2267899999999999999999999999998854 4 6788998888899999999999999998762
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 039177 306 GSKPD-VITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMF 384 (453)
Q Consensus 306 ~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 384 (453)
.|. -..|-.|.-.|.+.++++.|+-.|+...+.++. +.+....+...+-+.|+.|+|++++++....+.+ |+..-
T Consensus 485 --~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~ 560 (638)
T KOG1126|consen 485 --DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCK 560 (638)
T ss_pred --CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhH
Confidence 232 235566778899999999999999999998776 7778888888999999999999999999887644 33333
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHhc
Q 039177 385 DETICGLCQRGLVRKALELLKQMADKDVSPGARVWEALLLS 425 (453)
Q Consensus 385 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a 425 (453)
-.-+..+...+++++|+..+++++ .+.|+..+-..++.-
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk--~~vP~es~v~~llgk 599 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELK--ELVPQESSVFALLGK 599 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHH--HhCcchHHHHHHHHH
Confidence 334667778899999999999998 568887777766644
No 45
>PRK12370 invasion protein regulator; Provisional
Probab=99.40 E-value=7.7e-10 Score=108.18 Aligned_cols=266 Identities=13% Similarity=0.071 Sum_probs=183.5
Q ss_pred ChHhHHHHHHHHHhcCCC---ChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHh---------cCChhHHHHHHHHHHhC
Q 039177 168 DGKTCSLILSSVCEQRDL---SSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVK---------KEKVFDALGILNQMKSD 235 (453)
Q Consensus 168 ~~~~~~~ll~~~~~~~~~---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~ 235 (453)
+...|...+.+....... +.++|...|++..+.. +-+...|..+..+|.. .+++++|...+++..+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 444566666654332221 1268888888888765 2344556666555442 24478999999999887
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHH
Q 039177 236 GIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDV-ITY 314 (453)
Q Consensus 236 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~ 314 (453)
++. +..++..+...+...|++++|...|++.++.+ +.+...+..+...+...|++++|...++...+.. |+. ..+
T Consensus 334 dP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~ 409 (553)
T PRK12370 334 DHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAG 409 (553)
T ss_pred CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhH
Confidence 655 77888888888889999999999999998865 3346677888888999999999999999998854 443 233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhC
Q 039177 315 NTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQR 394 (453)
Q Consensus 315 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 394 (453)
..++..+...|++++|...++++.+....-+...+..+..+|...|+.++|...+.++.... ..+....+.+...|...
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhcc
Confidence 34455567789999999999988776422245567778888889999999999998875542 22233345555566777
Q ss_pred CCHHHHHHHHHHHhh-CCCCCCHHHHHHHHhchhcchhhHHHHHHHHHH
Q 039177 395 GLVRKALELLKQMAD-KDVSPGARVWEALLLSSVSKLDFVNTSFIRLVD 442 (453)
Q Consensus 395 g~~~~A~~~~~~m~~-~~~~p~~~~~~~ll~a~~~~~~~~~~~~~~~~~ 442 (453)
| ++|...++.+.+ .+..|....+..++.+..+..+.+.-. .++.+
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhc
Confidence 7 588887877765 344555556666676665555554333 44433
No 46
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.40 E-value=2.8e-11 Score=115.29 Aligned_cols=251 Identities=16% Similarity=0.140 Sum_probs=171.0
Q ss_pred HHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 039177 156 ILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSD 235 (453)
Q Consensus 156 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 235 (453)
.+-.+...|+.||..||..+|.-||..|++ +.|- +|.-|.-...+.+...++.++.+..+.++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdi--eaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDI--EAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCC--cccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 345577789999999999999999999999 6666 9999988888888999999999999999988876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------HCCCCCChhhH--------------HHHHHHHHhcCCHHH
Q 039177 236 GIKPDIVCYTMVLNGVIVQEDYVKAEELFDELL-------VLGLVPDVYTY--------------NVYINGLCKQNNVEA 294 (453)
Q Consensus 236 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~-------~~g~~~~~~~~--------------~~li~~~~~~~~~~~ 294 (453)
.|...||+.|+.+|...||+..-..+=++|. ..|+-....-+ ...+.-....|.++.
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 5788899999999999999765222222222 12221111111 111222233334444
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 295 GIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALN 374 (453)
Q Consensus 295 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 374 (453)
+.+++..+...... . ++-.+++-+... ....+++........-.|+..+|.+++.+-...|+++.|..++.+|.+
T Consensus 158 llkll~~~Pvsa~~-~--p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWN-A--PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHHhhCCccccc-c--hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 44444333221100 0 111123332221 223334443333321257888999999988889999999999999999
Q ss_pred CCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHhchhc
Q 039177 375 KGLCTQSSMFDETICGLCQRGLVRKALELLKQMADKDVSPGARVWEALLLSSVS 428 (453)
Q Consensus 375 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~ 428 (453)
+|+.....-|..|+-+ .|+..-+..+++-|.+.|+.|+..|+.-.+..|..
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 9988888888888766 77788888888888889999999998887777655
No 47
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=2.2e-09 Score=96.23 Aligned_cols=215 Identities=14% Similarity=0.060 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039177 188 DELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDEL 267 (453)
Q Consensus 188 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 267 (453)
..+..-|+..++... .+...|--+..+|.+..+.++..+.|++..+.+.. |..+|..-...+.-.+++++|..=|++.
T Consensus 343 ~~a~~d~~~~I~l~~-~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Ka 420 (606)
T KOG0547|consen 343 LGAQEDFDAAIKLDP-AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKA 420 (606)
T ss_pred hhhhhhHHHHHhcCc-ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666655541 12223777777888888888888888888877654 6667777677777778888888888888
Q ss_pred HHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----
Q 039177 268 LVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIV---- 343 (453)
Q Consensus 268 ~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---- 343 (453)
+... +.+...|--+..+..+.+.+++++..|++.++. ++.-+.+|+.....+...+++++|.+.|+..++....
T Consensus 421 i~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~ 498 (606)
T KOG0547|consen 421 ISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI 498 (606)
T ss_pred hhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc
Confidence 7743 234555666666667888899999999888874 4445678888889999999999999999887765222
Q ss_pred ---cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHh
Q 039177 344 ---LNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMA 408 (453)
Q Consensus 344 ---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (453)
+.+.+-.+++..-- .++++.|..++++..+.+.+ ....|..|...-.+.|+.++|+++|++-.
T Consensus 499 ~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 499 IVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 11111122222212 37888999999988887633 34458888888899999999999999865
No 48
>PRK12370 invasion protein regulator; Provisional
Probab=99.38 E-value=7.8e-10 Score=108.14 Aligned_cols=250 Identities=10% Similarity=-0.009 Sum_probs=179.8
Q ss_pred CCcHHHHHHHHHHHHHCCCccCh-HhHHHHHHHHHhc---------CCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHH
Q 039177 147 INRVGFAIEILNCMINDGFCVDG-KTCSLILSSVCEQ---------RDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSL 216 (453)
Q Consensus 147 ~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~---------~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 216 (453)
.+..++|+++|++..+. .|+. ..|..+..++... ++. ++|...+++..+.. +-+...+..+...+
T Consensus 274 ~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~--~~A~~~~~~Al~ld-P~~~~a~~~lg~~~ 348 (553)
T PRK12370 274 PYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAM--IKAKEHAIKATELD-HNNPQALGLLGLIN 348 (553)
T ss_pred HHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHH--HHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34567788888888764 4543 3454444443322 224 78999999988876 45677888899999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCHHHH
Q 039177 217 VKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDV-YTYNVYINGLCKQNNVEAG 295 (453)
Q Consensus 217 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~~~~~~a 295 (453)
...|++++|+..|++..+.++. +...+..+...+...|++++|...+++..+.. |+. ..+..++..+...|++++|
T Consensus 349 ~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA 425 (553)
T PRK12370 349 TIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDA 425 (553)
T ss_pred HHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHH
Confidence 9999999999999999987644 66788888999999999999999999998864 442 2333445557778999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 296 IKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNK 375 (453)
Q Consensus 296 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 375 (453)
...+++..+....-+...+..+..++...|++++|...+..+...... +....+.+...|...| +.|...++++.+.
T Consensus 426 ~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 426 IRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 999999876532224556777888899999999999999987665322 4445566667777777 5888878777654
Q ss_pred -CCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhC
Q 039177 376 -GLCTQSSMFDETICGLCQRGLVRKALELLKQMADK 410 (453)
Q Consensus 376 -~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 410 (453)
...+...-+ +-..|.-.|+.+.+..+ +++.+.
T Consensus 503 ~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 503 EQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 112222222 34456667887777766 888765
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.37 E-value=1.6e-08 Score=88.82 Aligned_cols=302 Identities=13% Similarity=0.008 Sum_probs=228.3
Q ss_pred HHHhhcccCCCCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHH
Q 039177 137 NLFYKIPKFRINRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSL 216 (453)
Q Consensus 137 ~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 216 (453)
...+.+.+...|++..|.++..+-.+.+-.| ...|..-..+.-..|+. +.+-.++.+..+.--.++...+-+.....
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~--~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDE--DRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccH--HHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 3344455556788888888887766654332 23455555666677777 89999999888873356777788889999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-------hhHHHHHHHHHhc
Q 039177 217 VKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDV-------YTYNVYINGLCKQ 289 (453)
Q Consensus 217 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~ 289 (453)
...|+++.|..-++++.+.+.. +.........+|.+.|++.....++..+.+.|.-.|. .+|..+++-....
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~ 242 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDD 242 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999988766 6778899999999999999999999999999876654 4577777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 039177 290 NNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLL 369 (453)
Q Consensus 290 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 369 (453)
+..+.-...++..... .+-++..-..++.-+.++|+.++|.++..+..+++..|+ -...-.+.+.++...-++..
T Consensus 243 ~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~ 317 (400)
T COG3071 243 NGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAA 317 (400)
T ss_pred ccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHH
Confidence 6666666666666543 445677788899999999999999999999999987766 22233456778888777777
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHhchhcchhhHHHH--HHHHHHhhhcC
Q 039177 370 EEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADKDVSPGARVWEALLLSSVSKLDFVNTS--FIRLVDQILNT 447 (453)
Q Consensus 370 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~~~~~~~~--~~~~~~~~~~~ 447 (453)
++-.... .-++..+..|-..|.+.+.+.+|.+.|+... ...|+..+|..+-.++...++...+. ..+-. .+...
T Consensus 318 e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl--~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L-~~~~~ 393 (400)
T COG3071 318 EKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAAL--KLRPSASDYAELADALDQLGEPEEAEQVRREAL-LLTRQ 393 (400)
T ss_pred HHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHH--hcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH-HHhcC
Confidence 7766542 3344778889999999999999999999877 66899999999988886666555433 33332 44445
Q ss_pred CCCC
Q 039177 448 PCKM 451 (453)
Q Consensus 448 p~~~ 451 (453)
|..|
T Consensus 394 ~~~~ 397 (400)
T COG3071 394 PNLP 397 (400)
T ss_pred CCCc
Confidence 5443
No 50
>PF13041 PPR_2: PPR repeat family
Probab=99.37 E-value=1.6e-12 Score=82.01 Aligned_cols=49 Identities=35% Similarity=0.608 Sum_probs=26.0
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 039177 204 FGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVI 252 (453)
Q Consensus 204 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 252 (453)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4455555555555555555555555555555555555555555555544
No 51
>PF13041 PPR_2: PPR repeat family
Probab=99.36 E-value=2.4e-12 Score=81.20 Aligned_cols=47 Identities=47% Similarity=0.772 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 039177 310 DVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGL 356 (453)
Q Consensus 310 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 356 (453)
|..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.||++|
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444333
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.34 E-value=2e-09 Score=93.34 Aligned_cols=201 Identities=10% Similarity=-0.029 Sum_probs=167.1
Q ss_pred ChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 039177 168 DGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMV 247 (453)
Q Consensus 168 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 247 (453)
....+..+...+...|+. ++|.+.+++..+.. +.+...+..+...|...|++++|.+.+++..+.... +...+..+
T Consensus 30 ~~~~~~~la~~~~~~~~~--~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~ 105 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDL--EVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNY 105 (234)
T ss_pred HHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHH
Confidence 345677788889999998 99999999988765 445778889999999999999999999999887544 66778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 039177 248 LNGVIVQEDYVKAEELFDELLVLGL-VPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRE 326 (453)
Q Consensus 248 l~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 326 (453)
...+...|++++|.+.++....... ......+..+...+...|++++|...+....+... .+...+..+...+...|+
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCC
Confidence 8999999999999999999987432 22345667788889999999999999999988542 246678889999999999
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 327 LNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALN 374 (453)
Q Consensus 327 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 374 (453)
+++|...+++..+.. ..+...+..+...+...|+.++|..+++.+..
T Consensus 185 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 185 YKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999998873 34667777888899999999999999888754
No 53
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.32 E-value=2.6e-07 Score=86.13 Aligned_cols=351 Identities=11% Similarity=0.044 Sum_probs=266.0
Q ss_pred HHHhhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHhhcccC
Q 039177 68 LHSFSIYNCEPPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFE--TPEFIFIDLIKTYADAHRFQDSVNLFYKIPKF 145 (453)
Q Consensus 68 l~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 145 (453)
+..+..-|+..+...|-.-..+|-..|..-....+.....-- |+. .-..+|+.-.+.|.+.+.++-|+.+|....+.
T Consensus 467 l~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigi-gvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv 545 (913)
T KOG0495|consen 467 LSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGI-GVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV 545 (913)
T ss_pred HHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhh-ccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh
Confidence 445667789999999988888999999988888888877754 332 22458888888999999999999888776553
Q ss_pred C----------------CCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhH
Q 039177 146 R----------------INRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDY 209 (453)
Q Consensus 146 ~----------------~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 209 (453)
. .|..+.-..+|++.... ++-....|....+.+...|++ ..|..++.+..+.. +-+..+|
T Consensus 546 fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv--~~ar~il~~af~~~-pnseeiw 621 (913)
T KOG0495|consen 546 FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDV--PAARVILDQAFEAN-PNSEEIW 621 (913)
T ss_pred ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCc--HHHHHHHHHHHHhC-CCcHHHH
Confidence 3 67777788888888764 233455666777778888998 89999998888775 3477889
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHh
Q 039177 210 TNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPD-VYTYNVYINGLCK 288 (453)
Q Consensus 210 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~ 288 (453)
-+-++.-..+.+++.|..+|.+.... .|+...|.--+..---.++.++|.+++++.++. .|+ ...|-.+...+-+
T Consensus 622 laavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 622 LAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQ 697 (913)
T ss_pred HHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHH
Confidence 99999999999999999999988875 556666666666666678999999999888874 244 4567777778888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 039177 289 QNNVEAGIKMIACMEELGSKPDV-ITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACG 367 (453)
Q Consensus 289 ~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 367 (453)
.++++.|.+.|..-.+. -|+. ..|-.|...=-+.|++-.|..+++...-++++ +...|-..|++-.+.|..+.|..
T Consensus 698 ~~~ie~aR~aY~~G~k~--cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 698 MENIEMAREAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAEL 774 (913)
T ss_pred HHHHHHHHHHHHhcccc--CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHH
Confidence 88999988888765552 3544 46667777777888999999999999888877 88899999999999999999988
Q ss_pred HHHHHHHC----CC-------------------------CCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCC-HH
Q 039177 368 LLEEALNK----GL-------------------------CTQSSMFDETICGLCQRGLVRKALELLKQMADKDVSPG-AR 417 (453)
Q Consensus 368 ~~~~m~~~----~~-------------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~ 417 (453)
+..+..+. |+ .-|....-.+...|.....+++|.+.|.+..+ +.|| -.
T Consensus 775 lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD 852 (913)
T KOG0495|consen 775 LMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGD 852 (913)
T ss_pred HHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccch
Confidence 87776653 11 23344444555667777889999999999884 4454 44
Q ss_pred HHHHHHhchhcchhh
Q 039177 418 VWEALLLSSVSKLDF 432 (453)
Q Consensus 418 ~~~~ll~a~~~~~~~ 432 (453)
+|.-+..-+..++.+
T Consensus 853 ~wa~fykfel~hG~e 867 (913)
T KOG0495|consen 853 AWAWFYKFELRHGTE 867 (913)
T ss_pred HHHHHHHHHHHhCCH
Confidence 555566656666643
No 54
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.31 E-value=2.2e-08 Score=94.99 Aligned_cols=294 Identities=15% Similarity=0.074 Sum_probs=204.2
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCC
Q 039177 86 VIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGF 165 (453)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~ 165 (453)
....+...|+++.|++.++.-.+. +.............|.+.|+.++|..+|..+.+ .
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~------------------r-- 67 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELID------------------R-- 67 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------H--
Confidence 345668899999999999886654 455567788889999999999999998887443 3
Q ss_pred ccChHhHHHHHHHHH-hc---CCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCC
Q 039177 166 CVDGKTCSLILSSVC-EQ---RDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKV-FDALGILNQMKSDGIKPD 240 (453)
Q Consensus 166 ~p~~~~~~~ll~~~~-~~---~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~~~ 240 (453)
.|+...|-..+..+. -. .+-+.+....+++++...- |.......+.-.+..-..+ ..+..++..+..+|+++
T Consensus 68 NPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs- 144 (517)
T PF12569_consen 68 NPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS- 144 (517)
T ss_pred CCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch-
Confidence 467776665555444 22 1112267778888876653 3322222222222221222 34556667777788663
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C----------CCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 241 IVCYTMVLNGVIVQEDYVKAEELFDELLVL----G----------LVPDVY--TYNVYINGLCKQNNVEAGIKMIACMEE 304 (453)
Q Consensus 241 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g----------~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~ 304 (453)
+|+.+-..|.......-..+++...... + -.|+.. ++..+...|-..|++++|++..+..++
T Consensus 145 --lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ 222 (517)
T PF12569_consen 145 --LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE 222 (517)
T ss_pred --HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 5666666676666666666666665432 1 123333 345556678899999999999999998
Q ss_pred CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 039177 305 LGSKPD-VITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSM 383 (453)
Q Consensus 305 ~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 383 (453)
. .|+ +..|..-...+-+.|++.+|.+.++.....+.. |...=+-.+..+.++|++++|.+++......+..|....
T Consensus 223 h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L 299 (517)
T PF12569_consen 223 H--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNL 299 (517)
T ss_pred c--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCH
Confidence 5 466 568888899999999999999999999998776 888888888999999999999999999887765333322
Q ss_pred H--------HHHHHHHHhCCCHHHHHHHHHHHhh
Q 039177 384 F--------DETICGLCQRGLVRKALELLKQMAD 409 (453)
Q Consensus 384 ~--------~~li~~~~~~g~~~~A~~~~~~m~~ 409 (453)
+ .....+|.+.|++..|+..|....+
T Consensus 300 ~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 300 NDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2 2335688899999888876666543
No 55
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.30 E-value=7.3e-09 Score=100.32 Aligned_cols=325 Identities=12% Similarity=0.078 Sum_probs=219.1
Q ss_pred ChhhHHHHHHHHHhcCCcchHHHHHHHHH----HcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHH
Q 039177 79 PPEAYHFVIKTLAENSQFCDISSVLDHIE----KRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAI 154 (453)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~ 154 (453)
|...|-.+...+- .++...++..|..+. .. +-.+...+.|.+...+...|.+..|...|.+...
T Consensus 413 d~~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~-~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~---------- 480 (1018)
T KOG2002|consen 413 DSEAWLELAQLLE-QTDPWASLDAYGNALDILESK-GKQIPPEVLNNVASLHFRLGNIEKALEHFKSALG---------- 480 (1018)
T ss_pred cHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHc-CCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhh----------
Confidence 3334443333333 344444454444333 22 3345666777777777777777777777766322
Q ss_pred HHHH-HHHH-CCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcC-hhhHHHHHHHHHhcCChhHHHHHHHH
Q 039177 155 EILN-CMIN-DGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFG-MVDYTNVIRSLVKKEKVFDALGILNQ 231 (453)
Q Consensus 155 ~~~~-~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 231 (453)
... .+.. .|-.++..+--.+...+-..++. +.|.++|..+.+.. |+ +..|--++.+....+...+|...+..
T Consensus 481 -~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~--~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~ 555 (1018)
T KOG2002|consen 481 -KLLEVANKDEGKSTNLTLKYNLARLLEELHDT--EVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKD 555 (1018)
T ss_pred -hhhhhcCccccccchhHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHH
Confidence 111 1110 11112222222334444555677 88999999998864 43 33344555455555788899999998
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHh------------cCCHHHHHHH
Q 039177 232 MKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLG-LVPDVYTYNVYINGLCK------------QNNVEAGIKM 298 (453)
Q Consensus 232 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~------------~~~~~~a~~~ 298 (453)
.....-. +...++.+...+.+...+..|..-|+...+.- ..+|..+.-+|.+.|.+ .+..++|+++
T Consensus 556 ~l~~d~~-np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~ 634 (1018)
T KOG2002|consen 556 ALNIDSS-NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQL 634 (1018)
T ss_pred HHhcccC-CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHH
Confidence 8875432 66667777778999999999988777765532 23577776666665543 3457899999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC
Q 039177 299 IACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNK-GL 377 (453)
Q Consensus 299 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~ 377 (453)
|.++.+... -|...-|.+.-.++..|++.+|..||..+.+.... +..+|-.+..+|..+|++-.|+++|+...+. .-
T Consensus 635 y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~ 712 (1018)
T KOG2002|consen 635 YGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYK 712 (1018)
T ss_pred HHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999988653 37778888999999999999999999999988553 5568889999999999999999999988766 44
Q ss_pred CCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 039177 378 CTQSSMFDETICGLCQRGLVRKALELLKQMADKDVSPGARVWEALL 423 (453)
Q Consensus 378 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 423 (453)
..+..+...|..++.++|.+.+|.+.+.........-....|+..+
T Consensus 713 ~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 713 KNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred cCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 5567788999999999999999999888877543333345555443
No 56
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.30 E-value=7.1e-10 Score=94.32 Aligned_cols=234 Identities=11% Similarity=-0.006 Sum_probs=196.8
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 039177 173 SLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVI 252 (453)
Q Consensus 173 ~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 252 (453)
+.+.++|.+.|.. .+|.+.++...+.. |-+.||-.|-++|.+..++..|+.++.+-.+.- +-|+....-+.+.+-
T Consensus 227 ~Q~gkCylrLgm~--r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMP--RRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcCh--hhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHH
Confidence 5688899999999 89999998887764 778899999999999999999999999988752 224444455777888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 039177 253 VQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRE 332 (453)
Q Consensus 253 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 332 (453)
..++.++|.++|+...+.. ..++.....+...|.-.++++-|+..|+.+.+.|+. +...|+.+.-+|.-.+++|-++.
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 8999999999999998864 356777778888899999999999999999999986 88899999999999999999999
Q ss_pred HHHHHHHCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhC
Q 039177 333 LVKEMKWKGIVLN--LQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADK 410 (453)
Q Consensus 333 ~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 410 (453)
-|......--.|+ ...|-.+-......|++..|.+.|+-....+ .-....++.|...-.+.|++++|..+++...
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~-- 456 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAK-- 456 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhh--
Confidence 9998887644444 3578888888888999999999999888775 3355678888888889999999999999987
Q ss_pred CCCCCH
Q 039177 411 DVSPGA 416 (453)
Q Consensus 411 ~~~p~~ 416 (453)
.+.|+.
T Consensus 457 s~~P~m 462 (478)
T KOG1129|consen 457 SVMPDM 462 (478)
T ss_pred hhCccc
Confidence 445653
No 57
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=5.4e-09 Score=92.87 Aligned_cols=178 Identities=13% Similarity=0.112 Sum_probs=132.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 039177 254 QEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLREL 333 (453)
Q Consensus 254 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 333 (453)
+|++++|.+.|++.+..........||+= -.+-..|++++|++.|-.+... +.-+..+...+.+.|-...+..+|+++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfnig-lt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIG-LTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 37788888888887764433333334432 2467788889998888776542 223666777888888888889999988
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCC
Q 039177 334 VKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADKDVS 413 (453)
Q Consensus 334 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 413 (453)
+.+.... +.-|+....-|.+.|-+.|+-..|.+..-+--. -++.+..+..-|..-|....-+++++.+|++.. =+.
T Consensus 581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaa--liq 656 (840)
T KOG2003|consen 581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQ 656 (840)
T ss_pred HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcC
Confidence 8776654 333777888899999999999988887654322 345567777777777778888999999999876 579
Q ss_pred CCHHHHHHHHhchhcchhhHHHHH
Q 039177 414 PGARVWEALLLSSVSKLDFVNTSF 437 (453)
Q Consensus 414 p~~~~~~~ll~a~~~~~~~~~~~~ 437 (453)
|+..-|..++..|.++.+.....|
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~ 680 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAF 680 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHH
Confidence 999999999999988877776664
No 58
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.28 E-value=4.3e-08 Score=94.44 Aligned_cols=328 Identities=10% Similarity=0.048 Sum_probs=244.3
Q ss_pred CCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC---------
Q 039177 76 CEPPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFR--------- 146 (453)
Q Consensus 76 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------- 146 (453)
.+..+..|-.|...+-..|+.+.+...+-.+.. -.+.|...|-.+.....+.|.++.|+-.|.+..+.+
T Consensus 169 dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~e 246 (895)
T KOG2076|consen 169 DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYE 246 (895)
T ss_pred CccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHH
Confidence 445678899999999999999887765543332 346677899999999999999999999999987766
Q ss_pred -------CCcHHHHHHHHHHHHHCCCccChHhHH----HHHHHHHhcCCCChHHHHHHHHHHHHc-CCCcChhhHHHHHH
Q 039177 147 -------INRVGFAIEILNCMINDGFCVDGKTCS----LILSSVCEQRDLSSDELLGFVQEMKKL-GFCFGMVDYTNVIR 214 (453)
Q Consensus 147 -------~~~~~~a~~~~~~m~~~~~~p~~~~~~----~ll~~~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~ 214 (453)
.|....|.+-|.++....-+.|..-+. .++..+...++. +.|.+.+...... +-..+...++.++.
T Consensus 247 rs~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~--e~a~~~le~~~s~~~~~~~~ed~ni~ae 324 (895)
T KOG2076|consen 247 RSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER--ERAAKALEGALSKEKDEASLEDLNILAE 324 (895)
T ss_pred HHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHhhccccccccHHHHHHH
Confidence 688888999999888753222222222 345556667766 7788877776653 33556677999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCC---------------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039177 215 SLVKKEKVFDALGILNQMKSDG---------------------------IKPDIVCYTMVLNGVIVQEDYVKAEELFDEL 267 (453)
Q Consensus 215 ~~~~~g~~~~a~~~~~~m~~~~---------------------------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 267 (453)
.|.+...++.|......+.... ..++...+. ++-++.+....+....+..-+
T Consensus 325 l~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r-l~icL~~L~~~e~~e~ll~~l 403 (895)
T KOG2076|consen 325 LFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR-LMICLVHLKERELLEALLHFL 403 (895)
T ss_pred HHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh-HhhhhhcccccchHHHHHHHH
Confidence 9999999999999988887622 222222211 223444555555555555555
Q ss_pred HHCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 039177 268 LVLG--LVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLN 345 (453)
Q Consensus 268 ~~~g--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~ 345 (453)
.+.. +.-+...|.-+..+|...|++.+|..+|..+......-+...|-.+..+|...|.+++|.+.|...+...+. +
T Consensus 404 ~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~ 482 (895)
T KOG2076|consen 404 VEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-N 482 (895)
T ss_pred HHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-c
Confidence 5555 334567788899999999999999999999998765567789999999999999999999999999988544 5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------CCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 039177 346 LQTYSIMIDGLASKGDIIEACGLLEEALN--------KGLCTQSSMFDETICGLCQRGLVRKALELLKQMAD 409 (453)
Q Consensus 346 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (453)
...--.|-..+.+.|+.++|.+.++.+.. .+..|...+-......+.+.|+.++=+.....|..
T Consensus 483 ~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 483 LDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred hhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 55666777888999999999999998542 23455566666667788899998886666666654
No 59
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.2e-08 Score=93.21 Aligned_cols=270 Identities=11% Similarity=-0.003 Sum_probs=207.5
Q ss_pred CcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHH
Q 039177 148 NRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALG 227 (453)
Q Consensus 148 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 227 (453)
.++++..++++...+. .+++...+..-|.++...|+. .+...+=..+.+.- |-...+|-++.--|...|+..+|.+
T Consensus 258 c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~--n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARr 333 (611)
T KOG1173|consen 258 CRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKS--NKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARR 333 (611)
T ss_pred ChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhccc--chHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHH
Confidence 3444444444445542 355666777778888999987 66666656666653 6678889999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 039177 228 ILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGS 307 (453)
Q Consensus 228 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 307 (453)
.|.+....+.. =...|-.....|.-.|..++|+..+...-+.= +-..--+--+.--|.+.+..+.|.+.|.+....
T Consensus 334 y~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-- 409 (611)
T KOG1173|consen 334 YFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-- 409 (611)
T ss_pred HHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc--
Confidence 99998765433 34578889999999999999999988775521 111111222334588999999999999998874
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC----cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 039177 308 KP-DVITYNTLLQALCKVRELNRLRELVKEMKWK--GIV----LNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQ 380 (453)
Q Consensus 308 ~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 380 (453)
.| |+..++-+.-..-..+.+.+|..+|+..+.. .+. -...+++.|..+|.+.+++++|+..+++..... +-+
T Consensus 410 ~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~ 488 (611)
T KOG1173|consen 410 APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKD 488 (611)
T ss_pred CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCc
Confidence 34 5667888877778889999999999987732 111 145578999999999999999999999998874 557
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHhchhc
Q 039177 381 SSMFDETICGLCQRGLVRKALELLKQMADKDVSPGARVWEALLLSSVS 428 (453)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~ 428 (453)
..++.++.-.|...|+++.|.+.|.+.+ .+.|+..+...+|.-+..
T Consensus 489 ~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 489 ASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIE 534 (611)
T ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHH
Confidence 7889999999999999999999999988 889999888888876543
No 60
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=5.6e-08 Score=87.09 Aligned_cols=147 Identities=7% Similarity=0.052 Sum_probs=118.6
Q ss_pred hhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhccc----CC---------
Q 039177 80 PEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPK----FR--------- 146 (453)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~--------- 146 (453)
...|-....-=...+++..|..+|+...... ..+..+|.-.+.+=.++..+..|+.++++... .+
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ym 150 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 3334434444445778888999999998764 56778999999999999999999999987433 22
Q ss_pred ---CCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChh
Q 039177 147 ---INRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVF 223 (453)
Q Consensus 147 ---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 223 (453)
.|++..|.++|++..+ ..|+...|.+.++.=.+-..+ +.|..+++...-.. |++.+|--....=-++|...
T Consensus 151 EE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykei--eraR~IYerfV~~H--P~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEI--ERARSIYERFVLVH--PKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHH--HHHHHHHHHHheec--ccHHHHHHHHHHHHhcCcHH
Confidence 7999999999999886 479999999999999999998 99999999887654 88888888888778888888
Q ss_pred HHHHHHHHHHh
Q 039177 224 DALGILNQMKS 234 (453)
Q Consensus 224 ~a~~~~~~m~~ 234 (453)
.|..+|+...+
T Consensus 225 ~aR~VyerAie 235 (677)
T KOG1915|consen 225 LARSVYERAIE 235 (677)
T ss_pred HHHHHHHHHHH
Confidence 88887777664
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.23 E-value=1.4e-09 Score=92.67 Aligned_cols=230 Identities=12% Similarity=0.028 Sum_probs=192.7
Q ss_pred HHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 039177 120 IDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKK 199 (453)
Q Consensus 120 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~ 199 (453)
+-+.++|.+.|.+.+|.+.|..-. . -.|-..||..|-++|.+..+. ..|+.++.+-.+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL------------------~--q~~~~dTfllLskvY~ridQP--~~AL~~~~~gld 284 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSL------------------T--QFPHPDTFLLLSKVYQRIDQP--ERALLVIGEGLD 284 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHh------------------h--cCCchhHHHHHHHHHHHhccH--HHHHHHHhhhhh
Confidence 567788888899988888876632 2 257788999999999999998 999999988776
Q ss_pred cCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 039177 200 LGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTY 279 (453)
Q Consensus 200 ~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 279 (453)
. ++.++....-+.+.+-..++.++|.++|+...+.... ++.....+...|.-.++++-|+..|+++++.|+ -+...|
T Consensus 285 ~-fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf 361 (478)
T KOG1129|consen 285 S-FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELF 361 (478)
T ss_pred c-CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHH
Confidence 5 3555555667788888999999999999999887543 777777888889999999999999999999996 578888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 039177 280 NVYINGLCKQNNVEAGIKMIACMEELGSKPDV--ITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLA 357 (453)
Q Consensus 280 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 357 (453)
+.+.-+|.-.+++|-++-.|......--.|+. .+|-.+-......|++..|.+.|+..+..+.. +...++.|.-.-.
T Consensus 362 ~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~ 440 (478)
T KOG1129|consen 362 CNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAA 440 (478)
T ss_pred hhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHh
Confidence 88888999999999999999988765444543 46778888888999999999999999988666 7788999998889
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 039177 358 SKGDIIEACGLLEEALNK 375 (453)
Q Consensus 358 ~~g~~~~A~~~~~~m~~~ 375 (453)
+.|++++|..+++.....
T Consensus 441 r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 441 RSGDILGARSLLNAAKSV 458 (478)
T ss_pred hcCchHHHHHHHHHhhhh
Confidence 999999999999988664
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.20 E-value=1.8e-08 Score=94.42 Aligned_cols=245 Identities=13% Similarity=0.119 Sum_probs=135.6
Q ss_pred hhhHHHHHHHHHhcCCcchHHHHHHHHHHc----CCC-CCCHH-HHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHH
Q 039177 80 PEAYHFVIKTLAENSQFCDISSVLDHIEKR----ENF-ETPEF-IFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFA 153 (453)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a 153 (453)
..+...+...|...|+++.|..++++.... .|. .+... ..+.+...|...+++++|..+|++ |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~-----------A 267 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEE-----------A 267 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHH-----------H
Confidence 445666889999999999999999988765 221 22222 333466788889999999999877 6
Q ss_pred HHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHc-----C-CCcChh-hHHHHHHHHHhcCChhHHH
Q 039177 154 IEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKL-----G-FCFGMV-DYTNVIRSLVKKEKVFDAL 226 (453)
Q Consensus 154 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~-----g-~~~~~~-~~~~li~~~~~~g~~~~a~ 226 (453)
+.+++.......+--..+++.|-.+|.+.|++ ++|...++...+. | ..+.+. .++.+...+...+++++|.
T Consensus 268 L~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf--~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~ 345 (508)
T KOG1840|consen 268 LTIREEVFGEDHPAVAATLNNLAVLYYKQGKF--AEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAK 345 (508)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccCCh--HHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHH
Confidence 66666655433333345677777788888888 7777666554432 1 111111 2455566666666666666
Q ss_pred HHHHHHHhC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC---CChhhHHHHHHHHHhcCCH
Q 039177 227 GILNQMKSD---GIKP----DIVCYTMVLNGVIVQEDYVKAEELFDELLVL----GLV---PDVYTYNVYINGLCKQNNV 292 (453)
Q Consensus 227 ~~~~~m~~~---~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~---~~~~~~~~li~~~~~~~~~ 292 (453)
.+++...+. -+.+ -..+++.|...|...|++++|+++|+..+.. +.. -....++.+...|.+.+..
T Consensus 346 ~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~ 425 (508)
T KOG1840|consen 346 KLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKY 425 (508)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhccc
Confidence 666655431 0111 1234555555555555555555555554321 000 1122334444445555555
Q ss_pred HHHHHHHHHHHH----CCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039177 293 EAGIKMIACMEE----LGS-KPDV-ITYNTLLQALCKVRELNRLRELVKEM 337 (453)
Q Consensus 293 ~~a~~~~~~m~~----~~~-~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~ 337 (453)
++|.++|.+... .|. .|++ .+|..|...|.+.|++++|.++.+.+
T Consensus 426 ~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 426 EEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred chHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 555555444321 111 1121 24455555555555555555544443
No 63
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.17 E-value=3.2e-06 Score=79.15 Aligned_cols=312 Identities=14% Similarity=0.052 Sum_probs=189.7
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhccc----CC---------------
Q 039177 86 VIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPK----FR--------------- 146 (453)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~--------------- 146 (453)
+.-++++...++.|..++....+. ++.+..+|.+-...--..|..+...++.++-.. .+
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 444666777788888888888875 577888888888877788888877777765221 11
Q ss_pred --CCcHHHHHHHHHHHHHCCCccC--hHhHHHHHHHHHhcCCCChHHHHHHH----------------------------
Q 039177 147 --INRVGFAIEILNCMINDGFCVD--GKTCSLILSSVCEQRDLSSDELLGFV---------------------------- 194 (453)
Q Consensus 147 --~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~~~a~~~~---------------------------- 194 (453)
.|..--+..+....+..|+.-. ..||+.--..|.+.+.+ +-+..+|
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~--~carAVya~alqvfp~k~slWlra~~~ek~hgt~E 567 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAI--ECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRE 567 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchH--HHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHH
Confidence 2333334444444444443321 12444444445555444 4444444
Q ss_pred ------HHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039177 195 ------QEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELL 268 (453)
Q Consensus 195 ------~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 268 (453)
++....- +-....|-...+.+-..|+...|..++....+.... +...|-.-+..-..+..++.|..+|.+..
T Consensus 568 sl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar 645 (913)
T KOG0495|consen 568 SLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKAR 645 (913)
T ss_pred HHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence 4433332 222333444445555566666666666666665444 55566666666666666667766666665
Q ss_pred HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH
Q 039177 269 VLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVI-TYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQ 347 (453)
Q Consensus 269 ~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 347 (453)
.. .|+...|.--+..---.+..++|.+++++..+. -|+-. .|..+.+.+-+.++++.|...|..-.+.- .-...
T Consensus 646 ~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c-P~~ip 720 (913)
T KOG0495|consen 646 SI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC-PNSIP 720 (913)
T ss_pred cc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC-CCCch
Confidence 53 355566655555555566667777777666653 34443 56666667777777777777666554442 22455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 039177 348 TYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMAD 409 (453)
Q Consensus 348 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (453)
.|-.|...--+.|.+..|..++++...++ +-+...|-..|..-.+.|+.+.|..++.+.++
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67777776677777777888887776665 34556677777777888888887777666554
No 64
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.17 E-value=6.9e-08 Score=90.65 Aligned_cols=237 Identities=16% Similarity=0.105 Sum_probs=168.3
Q ss_pred HhHHHHHHHHHhcCCCChHHHHHHHHHHHHc-----C-CCcChhh-HHHHHHHHHhcCChhHHHHHHHHHHhC-----CC
Q 039177 170 KTCSLILSSVCEQRDLSSDELLGFVQEMKKL-----G-FCFGMVD-YTNVIRSLVKKEKVFDALGILNQMKSD-----GI 237 (453)
Q Consensus 170 ~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~-----g-~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~ 237 (453)
.+...+...|...|++ +.|..++....+. | ..|.+.+ .+.+...|...+++++|..+|+++... |-
T Consensus 200 ~~~~~La~~y~~~g~~--e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRL--EKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHhccH--HHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 4666788889999999 8999988877654 2 1222222 445777888899999999999988752 21
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCC-CCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 039177 238 --KPDIVCYTMVLNGVIVQEDYVKAEELFDELLV-----LGL-VPDV-YTYNVYINGLCKQNNVEAGIKMIACMEEL--- 305 (453)
Q Consensus 238 --~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-----~g~-~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~--- 305 (453)
+--..+++.|..+|.+.|++++|...++...+ .|. .+.+ ..++.+...|+..+++++|..+++...+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 11334667777789999999988888877643 111 1222 23566777788899999999888765531
Q ss_pred CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 306 GSKPD----VITYNTLLQALCKVRELNRLRELVKEMKWK-----G--IVLNLQTYSIMIDGLASKGDIIEACGLLEEALN 374 (453)
Q Consensus 306 ~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 374 (453)
-+.++ ..+++.|...|.+.|++++|.++|+.++.. | ..-....++.|...|.+.++..+|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 12222 247899999999999999999999987653 1 111245677888889999999989888876543
Q ss_pred ----CCC--CCChhhHHHHHHHHHhCCCHHHHHHHHHHHh
Q 039177 375 ----KGL--CTQSSMFDETICGLCQRGLVRKALELLKQMA 408 (453)
Q Consensus 375 ----~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (453)
.|. +-...+|..|...|...|++++|+++.+...
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 222 2234578889999999999999999887765
No 65
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.13 E-value=1.1e-07 Score=77.42 Aligned_cols=209 Identities=14% Similarity=0.009 Sum_probs=170.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 039177 208 DYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLC 287 (453)
Q Consensus 208 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 287 (453)
+...|.-.|.+.|+...|.+-+++..+..+. +..+|..+...|.+.|+.+.|.+-|+..++.. +-+-.+.|..-..+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 3556778899999999999999999988655 77889999999999999999999999988854 345667788888889
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 039177 288 KQNNVEAGIKMIACMEELGSKPD-VITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEAC 366 (453)
Q Consensus 288 ~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 366 (453)
..|++++|...|+.....-.-+. ..+|..+.-+..+.|+.+.|...|+..++.... ...+.-.+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 99999999999999887533232 458888888888999999999999999988655 5567778888888999999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 039177 367 GLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADKDVSPGARVWEAL 422 (453)
Q Consensus 367 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 422 (453)
.+++.....+. ++.......|..-...|+.+.+-++=.++.. .-|...-|..+
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~s~e~q~f 246 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPYSEEYQTF 246 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHHhH
Confidence 99999987764 7877777778888889999988887777663 35665555544
No 66
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=7.6e-07 Score=78.67 Aligned_cols=306 Identities=12% Similarity=0.067 Sum_probs=205.5
Q ss_pred CCCChhhHHHHHHHHHh--cCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHH
Q 039177 76 CEPPPEAYHFVIKTLAE--NSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFA 153 (453)
Q Consensus 76 ~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a 153 (453)
++|.-.+...-+.+++. .++...+...+-.+.....++.|+.....+.+.|...|+.++|+..|++....
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~-------- 261 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA-------- 261 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--------
Confidence 44445555555665555 56666777777777766678999999999999999999999999999985432
Q ss_pred HHHHHHHHHCCCccCh----HhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHH
Q 039177 154 IEILNCMINDGFCVDG----KTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGIL 229 (453)
Q Consensus 154 ~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 229 (453)
.|+. ..|..|+ ...|+. +....+...+.... .-+...|-.-.......+++..|+.+-
T Consensus 262 ------------dpy~i~~MD~Ya~LL---~~eg~~--e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~ 323 (564)
T KOG1174|consen 262 ------------NPDNVEAMDLYAVLL---GQEGGC--EQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFV 323 (564)
T ss_pred ------------ChhhhhhHHHHHHHH---HhccCH--hhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 2222 2343343 344555 44444444444322 223444555556666677888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 039177 230 NQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKP 309 (453)
Q Consensus 230 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 309 (453)
++..+.+.. +...|-.-...+...|++++|.-.|+...... +.+...|.-++..|...|.+.+|.-+-....+. +.-
T Consensus 324 eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~ 400 (564)
T KOG1174|consen 324 EKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQN 400 (564)
T ss_pred HHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhc
Confidence 877765433 44444444466778888888888888876643 356788888999999999888887766554432 223
Q ss_pred CHHHHHHHH-HHHHh-cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 039177 310 DVITYNTLL-QALCK-VRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDET 387 (453)
Q Consensus 310 ~~~~~~~li-~~~~~-~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 387 (453)
+..+.+.+. ..|.- -..-++|.++++.-++..+. -....+.+...+...|...+++.++++.... .||....+.|
T Consensus 401 sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~L 477 (564)
T KOG1174|consen 401 SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHL 477 (564)
T ss_pred chhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHH
Confidence 444555442 33322 22346788888777665332 3446677777888888889999988887653 6788888888
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCC
Q 039177 388 ICGLCQRGLVRKALELLKQMADKDVSPG 415 (453)
Q Consensus 388 i~~~~~~g~~~~A~~~~~~m~~~~~~p~ 415 (453)
...+.-.+.+.+|++.|.... .+.|+
T Consensus 478 gd~~~A~Ne~Q~am~~y~~AL--r~dP~ 503 (564)
T KOG1174|consen 478 GDIMRAQNEPQKAMEYYYKAL--RQDPK 503 (564)
T ss_pred HHHHHHhhhHHHHHHHHHHHH--hcCcc
Confidence 888888888899888888877 44554
No 67
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.09 E-value=8.2e-07 Score=84.47 Aligned_cols=262 Identities=13% Similarity=0.106 Sum_probs=185.9
Q ss_pred HHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCccCh-HhHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Q 039177 122 LIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCVDG-KTCSLILSSVCEQRDLSSDELLGFVQEMKKL 200 (453)
Q Consensus 122 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~ 200 (453)
....+...|++++|++.+++... .-+|. .........+.+.|+. ++|..++..+.+.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~--------------------~I~Dk~~~~E~rA~ll~kLg~~--~eA~~~y~~Li~r 67 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEK--------------------QILDKLAVLEKRAELLLKLGRK--EEAEKIYRELIDR 67 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhh--------------------hCCCHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHH
Confidence 34556778888888888765322 23444 4556777788999999 9999999999998
Q ss_pred CCCcChhhHHHHHHHHH-hc-----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCC
Q 039177 201 GFCFGMVDYTNVIRSLV-KK-----EKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYV-KAEELFDELLVLGLV 273 (453)
Q Consensus 201 g~~~~~~~~~~li~~~~-~~-----g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~-~a~~~~~~m~~~g~~ 273 (453)
+ |+...|...+..+. -. ...+...++++++...- |.......+.-.+.....+. .+...+..++..|+
T Consensus 68 N--Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv- 142 (517)
T PF12569_consen 68 N--PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV- 142 (517)
T ss_pred C--CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCC-
Confidence 7 66666554444443 22 35678888999887764 33333333332233322333 44566667778886
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039177 274 PDVYTYNVYINGLCKQNNVEAGIKMIACMEEL----G----------SKPDV--ITYNTLLQALCKVRELNRLRELVKEM 337 (453)
Q Consensus 274 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~----------~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~ 337 (453)
+.+|+.+-..|......+-..+++...... + -.|+. +++..+.+.|...|++++|+.+++..
T Consensus 143 --PslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~a 220 (517)
T PF12569_consen 143 --PSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKA 220 (517)
T ss_pred --chHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 356677777777666666666676665432 1 12333 35567788899999999999999999
Q ss_pred HHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCC
Q 039177 338 KWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADKDVSP 414 (453)
Q Consensus 338 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 414 (453)
+++.+. .+..|..-.+.|-+.|++.+|.+.++.....+ .-|..+=+..+..+.++|++++|.+++......+..|
T Consensus 221 I~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 221 IEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred HhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc
Confidence 998544 46788889999999999999999999998886 3466666666788899999999999999998776544
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.08 E-value=3.4e-07 Score=82.14 Aligned_cols=195 Identities=11% Similarity=-0.064 Sum_probs=100.1
Q ss_pred hHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 039177 171 TCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNG 250 (453)
Q Consensus 171 ~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 250 (453)
.|..+...+...|+. ++|...|++..+.. +.+...|+.+...|...|++++|.+.|+...+..+. +..+|..+..+
T Consensus 66 ~~~~~g~~~~~~g~~--~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~ 141 (296)
T PRK11189 66 LHYERGVLYDSLGLR--ALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHCCCH--HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 455555556666666 66666666666654 334556666666666777777777766666654333 44555666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 039177 251 VIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRL 330 (453)
Q Consensus 251 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 330 (453)
+...|++++|.+.|+...+.. |+..........+...++.++|...|....... .|+...+ .+ .....|++..+
T Consensus 142 l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~--~~~~lg~~~~~ 215 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NI--VEFYLGKISEE 215 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HH--HHHHccCCCHH
Confidence 666667777766666666533 322211111222334556666666665443321 2222111 12 12223343332
Q ss_pred HHHHHHHHHC---CC--Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039177 331 RELVKEMKWK---GI--VL-NLQTYSIMIDGLASKGDIIEACGLLEEALNKG 376 (453)
Q Consensus 331 ~~~~~~~~~~---~~--~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 376 (453)
..+..+.+. .+ .| ....|..+...+.+.|++++|...|++..+.+
T Consensus 216 -~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 216 -TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 233333321 11 00 22355666666666666666666666665544
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.08 E-value=2.4e-07 Score=83.10 Aligned_cols=225 Identities=12% Similarity=-0.066 Sum_probs=159.0
Q ss_pred HHHHHHHHHHHHcC-CCc--ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 039177 188 DELLGFVQEMKKLG-FCF--GMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELF 264 (453)
Q Consensus 188 ~~a~~~~~~~~~~g-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 264 (453)
+.+..-+.++.... ..| ....|..+...|.+.|+.++|...|++..+..+. +...|+.+...+...|++++|...|
T Consensus 43 e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~ 121 (296)
T PRK11189 43 EVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEAF 121 (296)
T ss_pred HHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56666666666532 122 2455888888999999999999999999987654 7889999999999999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 039177 265 DELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVL 344 (453)
Q Consensus 265 ~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 344 (453)
+..++.. +-+..+|..+..++...|++++|.+.|+...+.. |+..........+...++.++|...|....... .|
T Consensus 122 ~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~ 197 (296)
T PRK11189 122 DSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DK 197 (296)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-Cc
Confidence 9998854 2346677888888999999999999999998854 544322233333456788999999997765442 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC--C-CChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHH
Q 039177 345 NLQTYSIMIDGLASKGDIIEACGLLEEALNK---GL--C-TQSSMFDETICGLCQRGLVRKALELLKQMADKDVSPGARV 418 (453)
Q Consensus 345 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 418 (453)
+...+ .+. ....|+.+.+ +.++.+.+. .. . .....|..+...+.+.|++++|...|++..+.+ .||..-
T Consensus 198 ~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e 272 (296)
T PRK11189 198 EQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVE 272 (296)
T ss_pred cccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHH
Confidence 32222 222 2335666554 355555432 11 1 123468888999999999999999999998543 235555
Q ss_pred HHHH
Q 039177 419 WEAL 422 (453)
Q Consensus 419 ~~~l 422 (453)
+...
T Consensus 273 ~~~~ 276 (296)
T PRK11189 273 HRYA 276 (296)
T ss_pred HHHH
Confidence 5443
No 70
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.01 E-value=6.2e-06 Score=78.72 Aligned_cols=359 Identities=13% Similarity=0.036 Sum_probs=217.9
Q ss_pred HHhhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC--
Q 039177 69 HSFSIYNCEPPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFR-- 146 (453)
Q Consensus 69 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-- 146 (453)
..+......-|+..|..+--++...|+++.+.+.|++...- .-.....|..+--.|..+|.-..|+.+.+.-....
T Consensus 312 ~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~--~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 312 RKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF--SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh--hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 33444556678999999999999999999999999998864 34456789999999999999999999987644332
Q ss_pred -----------------CCcHHHHHHHHHHHHH--CCC--ccChHhHHHHHHHHHhcCCCC---------hHHHHHHHHH
Q 039177 147 -----------------INRVGFAIEILNCMIN--DGF--CVDGKTCSLILSSVCEQRDLS---------SDELLGFVQE 196 (453)
Q Consensus 147 -----------------~~~~~~a~~~~~~m~~--~~~--~p~~~~~~~ll~~~~~~~~~~---------~~~a~~~~~~ 196 (453)
.+.+++++++-.+... .+. ......|..+.-+|...-... ..++.+.+++
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE 469 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence 4566666666655554 111 123334444444443222111 0456667777
Q ss_pred HHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC--
Q 039177 197 MKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVL-GLV-- 273 (453)
Q Consensus 197 ~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~-- 273 (453)
..+.+ +.|..+...+.--|+..++++.|++..++..+.+..-+...|..+.-.+...+++.+|+.+.+..... |..
T Consensus 470 av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~ 548 (799)
T KOG4162|consen 470 AVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHV 548 (799)
T ss_pred HHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh
Confidence 76654 33444444555667788889999999999988866668888988888888889999998888766542 210
Q ss_pred ----------------CChhhHHHHHHHHHh---------cC--------------CHHHHHHHHHHHH--------HCC
Q 039177 274 ----------------PDVYTYNVYINGLCK---------QN--------------NVEAGIKMIACME--------ELG 306 (453)
Q Consensus 274 ----------------~~~~~~~~li~~~~~---------~~--------------~~~~a~~~~~~m~--------~~~ 306 (453)
-...|+..++..+-. .| +..++......+. ..|
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence 011122222222110 00 0001111111100 001
Q ss_pred -----------CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 039177 307 -----------SKPD------VITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLL 369 (453)
Q Consensus 307 -----------~~p~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 369 (453)
..|+ ...|......+.+.++.++|...+.+..+..+. ....|......+...|...+|.+.|
T Consensus 629 se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 629 SELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred cccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 0122 123556666777777777777666666655332 5556666666777777888888877
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHH--HHHHHhhCCCCCCHHHHHHHHhchhcchhhH
Q 039177 370 EEALNKGLCTQSSMFDETICGLCQRGLVRKALE--LLKQMADKDVSPGARVWEALLLSSVSKLDFV 433 (453)
Q Consensus 370 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~~~~p~~~~~~~ll~a~~~~~~~~ 433 (453)
......+ +-......++...+.+.|+..-|.. ++.++.+.+ .-+...|..+=..+...||..
T Consensus 708 ~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 708 LVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchH
Confidence 7766543 2233456667777777777666665 777777433 124555555544444444433
No 71
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1.1e-06 Score=80.90 Aligned_cols=285 Identities=11% Similarity=-0.021 Sum_probs=214.5
Q ss_pred CCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHH
Q 039177 76 CEPPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIE 155 (453)
Q Consensus 76 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~ 155 (453)
..-++.....-..-|...+++.+..++.+.+.+.. +++...+..-|.++.+.|+..+-..+=.+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~-------------- 303 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHK-------------- 303 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHH--------------
Confidence 33455555566667777888999999999888875 44555666667788887776554333222
Q ss_pred HHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 039177 156 ILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSD 235 (453)
Q Consensus 156 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 235 (453)
|.+. .+-.+.+|-++.--|...+.. .+|.+.|....... +.=...|-.....|+-.|..++|+..+...-+.
T Consensus 304 ----LV~~-yP~~a~sW~aVg~YYl~i~k~--seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl 375 (611)
T KOG1173|consen 304 ----LVDL-YPSKALSWFAVGCYYLMIGKY--SEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL 375 (611)
T ss_pred ----HHHh-CCCCCcchhhHHHHHHHhcCc--HHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh
Confidence 3332 344567899998888888998 99999998876543 122457999999999999999999999887663
Q ss_pred --CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CC
Q 039177 236 --GIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEEL----G-SK 308 (453)
Q Consensus 236 --~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~-~~ 308 (453)
|.. -+..| +.--|.+.++++.|.+.|.+..... +.|+...+-+.-.....+.+.+|...|+..... + -+
T Consensus 376 ~~G~h-lP~LY--lgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~ 451 (611)
T KOG1173|consen 376 MPGCH-LPSLY--LGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK 451 (611)
T ss_pred ccCCc-chHHH--HHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccc
Confidence 322 11222 3345778899999999999987753 457778888877788889999999999887621 1 01
Q ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 039177 309 -PDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDET 387 (453)
Q Consensus 309 -p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 387 (453)
.-..+++.|..+|.+.+.+++|+..++..+....+ +..++.++.-.|...|+++.|.+.|.+... +.|+..+...+
T Consensus 452 ~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~l 528 (611)
T KOG1173|consen 452 IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISEL 528 (611)
T ss_pred cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHH
Confidence 13457899999999999999999999999988766 899999999999999999999999998865 57887776666
Q ss_pred HHHH
Q 039177 388 ICGL 391 (453)
Q Consensus 388 i~~~ 391 (453)
+..+
T Consensus 529 L~~a 532 (611)
T KOG1173|consen 529 LKLA 532 (611)
T ss_pred HHHH
Confidence 6543
No 72
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.98 E-value=3.8e-06 Score=78.09 Aligned_cols=304 Identities=10% Similarity=-0.089 Sum_probs=181.0
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHH
Q 039177 81 EAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPE-FIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNC 159 (453)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~ 159 (453)
..|..+...+...|+.+.+...+....+......+. .........+...|++++|...+++.
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~----------------- 69 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQL----------------- 69 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------------
Confidence 345556666667788888877777766553222232 22222334456678888887777663
Q ss_pred HHHCCCccC-hHhHHHHHHHHHh----cCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039177 160 MINDGFCVD-GKTCSLILSSVCE----QRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKS 234 (453)
Q Consensus 160 m~~~~~~p~-~~~~~~ll~~~~~----~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 234 (453)
... .|+ ...+.. ...+.. .+.. ..+.+.+.. .....+........+...+...|++++|.+.+++..+
T Consensus 70 -l~~--~P~~~~a~~~-~~~~~~~~~~~~~~--~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~ 142 (355)
T cd05804 70 -LDD--YPRDLLALKL-HLGAFGLGDFSGMR--DHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE 142 (355)
T ss_pred -HHH--CCCcHHHHHH-hHHHHHhcccccCc--hhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 322 233 333332 112222 3333 445554443 1111222334455667788999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC
Q 039177 235 DGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGL-VPDV--YTYNVYINGLCKQNNVEAGIKMIACMEELGS-KPD 310 (453)
Q Consensus 235 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~ 310 (453)
.... +...+..+...+...|++++|...+++...... .++. ..|..+...+...|+.++|..+++....... .+.
T Consensus 143 ~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~ 221 (355)
T cd05804 143 LNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDP 221 (355)
T ss_pred hCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCCh
Confidence 7544 567788888999999999999999999877432 1222 3455678889999999999999999865332 112
Q ss_pred HHHH-H--HHHHHHHhcCCHHHHHHH---HHHHHHCCC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----
Q 039177 311 VITY-N--TLLQALCKVRELNRLREL---VKEMKWKGI-VLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLC----- 378 (453)
Q Consensus 311 ~~~~-~--~li~~~~~~~~~~~a~~~---~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----- 378 (453)
.... + .++.-+...|..+.+.+. ......... ............++...|+.+.|..+++.+......
T Consensus 222 ~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 301 (355)
T cd05804 222 ALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNK 301 (355)
T ss_pred HHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchh
Confidence 2111 1 233333444443333332 111111101 111222235677788899999999999988664221
Q ss_pred -C--ChhhHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 039177 379 -T--QSSMFDETICGLCQRGLVRKALELLKQMAD 409 (453)
Q Consensus 379 -~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (453)
. ..........++...|+.++|.+.+.....
T Consensus 302 ~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 302 QPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred hhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 111122223345688999999999988764
No 73
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.97 E-value=9.2e-07 Score=72.24 Aligned_cols=199 Identities=13% Similarity=-0.046 Sum_probs=157.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 039177 243 CYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALC 322 (453)
Q Consensus 243 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 322 (453)
+..-|.-.|...|+...|..-+++.++.. +.+..+|..+...|.+.|+.+.|.+.|+...+.... +..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 34456778999999999999999999865 345678899999999999999999999999985422 4568899999999
Q ss_pred hcCCHHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHH
Q 039177 323 KVRELNRLRELVKEMKWKGI-VLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKAL 401 (453)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 401 (453)
..|++++|...|+....... .--..+|..+.-+..+.|+.+.|...|++..+.+ .-.......+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 99999999999999988732 2234689999999999999999999999998875 334455677888899999999999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHhchhcchh--hHHHHHHHHHHhhh
Q 039177 402 ELLKQMADKDVSPGARVWEALLLSSVSKLD--FVNTSFIRLVDQIL 445 (453)
Q Consensus 402 ~~~~~m~~~~~~p~~~~~~~ll~a~~~~~~--~~~~~~~~~~~~~~ 445 (453)
.+++.....+. ++..+....|..-..-+| .+...-..+...++
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 99999887655 888877776665433333 33333334444433
No 74
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.96 E-value=2.3e-05 Score=70.87 Aligned_cols=347 Identities=13% Similarity=0.126 Sum_probs=223.4
Q ss_pred chHHHHHHHhhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhh
Q 039177 62 HILSSLLHSFSIYNCEPPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYK 141 (453)
Q Consensus 62 ~~~~~ll~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 141 (453)
..+..++... ....|+...|.+.|+.=.+-+..+.|..+|+...-. .|++..|......=-++|.+..|..+|+.
T Consensus 158 ~gaRqiferW--~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~---HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 158 AGARQIFERW--MEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV---HPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred HHHHHHHHHH--HcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee---cccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3344445443 247899999999999999999999999999999854 79999999999999999999999999987
Q ss_pred cccCC-------------------CCcHHHHHHHHHHHHHCCCccC--hHhHHHHHHHHHhcCCCCh-HHHHH-----HH
Q 039177 142 IPKFR-------------------INRVGFAIEILNCMINDGFCVD--GKTCSLILSSVCEQRDLSS-DELLG-----FV 194 (453)
Q Consensus 142 ~~~~~-------------------~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~-~~a~~-----~~ 194 (453)
..+.- ...++.|.-+|.-.+.. ++-+ ...|..+...=-+-|+... +.+.- -+
T Consensus 233 Aie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 233 AIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQY 311 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHH
Confidence 55432 34444555555554442 2222 2344444443334444311 22211 22
Q ss_pred HHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHH---HhcCCHHHHHHHH
Q 039177 195 QEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDI-------VCYTMVLNGV---IVQEDYVKAEELF 264 (453)
Q Consensus 195 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~---~~~g~~~~a~~~~ 264 (453)
+.+.+.+ +.|-.+|-..++.--..|+.+...++|++.... ++|-. ..|-.+=-++ ....+.+.+.++|
T Consensus 312 E~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 312 EKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3344433 566777778888777888888888888888764 33311 1222221222 2456778888888
Q ss_pred HHHHHCCCCCChhhHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 265 DELLVLGLVPDVYTYNVYINGL----CKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWK 340 (453)
Q Consensus 265 ~~m~~~g~~~~~~~~~~li~~~----~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 340 (453)
...++. ++....||.-+=-.| .++.++..|.+++...+ |..|-..+|...|..=.+.+++|....+++..++.
T Consensus 390 q~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 390 QACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred HHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 877762 333455555443333 35667777777777665 35577777777777777778888888888877777
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHH
Q 039177 341 GIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKG-LCTQSSMFDETICGLCQRGLVRKALELLKQMADKDVSPGARVW 419 (453)
Q Consensus 341 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 419 (453)
++. |..+|......-...|+.+.|..+|+-..... +......|...|..-...|.+++|..+++++++. .+...+|
T Consensus 467 ~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvW 543 (677)
T KOG1915|consen 467 SPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVW 543 (677)
T ss_pred ChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHH
Confidence 666 66777777776677778888888887776542 2222334555555556777777777777777753 3333344
Q ss_pred HHH
Q 039177 420 EAL 422 (453)
Q Consensus 420 ~~l 422 (453)
.++
T Consensus 544 isF 546 (677)
T KOG1915|consen 544 ISF 546 (677)
T ss_pred HhH
Confidence 443
No 75
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=4.8e-07 Score=81.63 Aligned_cols=219 Identities=14% Similarity=0.080 Sum_probs=173.3
Q ss_pred CCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHH
Q 039177 147 INRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDAL 226 (453)
Q Consensus 147 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 226 (453)
.|+...|.+.|+..+.....++. .|-.+..+|....+- .+..+.|+...+.+ +-+..+|..-..++.-.+++++|.
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~--~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQS--EKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhcc--HHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHH
Confidence 56777777777777765433332 266667778888887 89999999988876 567788888888888899999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039177 227 GILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELG 306 (453)
Q Consensus 227 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 306 (453)
.-|++.....+. ++..|--+.-+..+.+.+++++..|++..+. ++..+..|+.....+...+++++|.+.|+..++..
T Consensus 415 aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 415 ADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 999999987544 6677777777778899999999999998774 55667889999999999999999999999988742
Q ss_pred CCCC-------H--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 307 SKPD-------V--ITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNK 375 (453)
Q Consensus 307 ~~p~-------~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 375 (453)
|+ . .+--.++..= =.+++..|..++....+.+++ ....|..|...-.+.|++++|+++|++-...
T Consensus 493 --~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 493 --PREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred --cccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33 1 1111122111 238999999999999998777 6778999999999999999999999987543
No 76
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=1.7e-06 Score=73.27 Aligned_cols=279 Identities=14% Similarity=0.110 Sum_probs=183.3
Q ss_pred hhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC-------------
Q 039177 80 PEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFR------------- 146 (453)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------------- 146 (453)
.--+++++..+.+..++++|++++..-.++. +.+..-...|..+|-...++..|...|+.+-...
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQS 87 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHH
Confidence 3346677777888888888888888877763 4466777788888888888888888888765433
Q ss_pred ---CCcHHHHHHHHHHHHHCCCccChHhHHHHHHHH--HhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCC
Q 039177 147 ---INRVGFAIEILNCMINDGFCVDGKTCSLILSSV--CEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEK 221 (453)
Q Consensus 147 ---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 221 (453)
.+.+..|+.+...|... ++...-..-+.+. ...+++ ..+..+.++....| +..+.+.......+.|+
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl--~g~rsLveQlp~en---~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDL--PGSRSLVEQLPSEN---EADGQINLGCLLYKEGQ 159 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccC--cchHHHHHhccCCC---ccchhccchheeecccc
Confidence 45666666666655432 2222222222222 234455 66666666655433 45555666666778899
Q ss_pred hhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-------------Ch-----------
Q 039177 222 VFDALGILNQMKSD-GIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVP-------------DV----------- 276 (453)
Q Consensus 222 ~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~-------------~~----------- 276 (453)
++.|++-|+...+- |.. ....|+..+..| +.|+.+.|++...+++++|+.. |+
T Consensus 160 yEaAvqkFqaAlqvsGyq-pllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~ 237 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQ-PLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQ 237 (459)
T ss_pred HHHHHHHHHHHHhhcCCC-chhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHH
Confidence 99999999998875 555 556788666544 5689999999999998877532 11
Q ss_pred ----hhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 039177 277 ----YTYNVYINGLCKQNNVEAGIKMIACMEEL-GSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSI 351 (453)
Q Consensus 277 ----~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 351 (453)
..+|.-...+.+.++.+.|.+.+-.|.-. ....|++|...+.-.- -.+++.+..+-+.-+...++- ...||..
T Consensus 238 Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFAN 315 (459)
T KOG4340|consen 238 SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFAN 315 (459)
T ss_pred HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHHH
Confidence 11233333456788888888888877532 2345666666553322 234455555556666666553 4568888
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 039177 352 MIDGLASKGDIIEACGLLEEA 372 (453)
Q Consensus 352 li~~~~~~g~~~~A~~~~~~m 372 (453)
++-.||++.-++.|-.++.+-
T Consensus 316 lLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhhC
Confidence 888899988888888877643
No 77
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.90 E-value=3.4e-05 Score=72.36 Aligned_cols=289 Identities=8% Similarity=0.044 Sum_probs=163.1
Q ss_pred CCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC--------
Q 039177 75 NCEPPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFR-------- 146 (453)
Q Consensus 75 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------- 146 (453)
.+.-....|...+......+-++.+.++|++..+- .| ..-+.-|..+++.+++++|.+.+..+...+
T Consensus 133 pvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~---~P--~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gk 207 (835)
T KOG2047|consen 133 PVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV---AP--EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGK 207 (835)
T ss_pred chHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc---CH--HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhccc
Confidence 34445566777777777788888888888888754 23 346777888888888888888888776544
Q ss_pred -------------CCcHH-----HHHHHHHHHHHCCCccCh--HhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcCh
Q 039177 147 -------------INRVG-----FAIEILNCMINDGFCVDG--KTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGM 206 (453)
Q Consensus 147 -------------~~~~~-----~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 206 (453)
..+.+ ....+++.+.. .-+|. ..|++|..-|.+.|.+ +.|.+++++....- .++
T Consensus 208 Sn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~--rftDq~g~Lw~SLAdYYIr~g~~--ekarDvyeeai~~v--~tv 281 (835)
T KOG2047|consen 208 SNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR--RFTDQLGFLWCSLADYYIRSGLF--EKARDVYEEAIQTV--MTV 281 (835)
T ss_pred chhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc--cCcHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHhh--eeh
Confidence 00000 11112222211 12332 3567777777777777 77777777665542 233
Q ss_pred hhHHHHHHHHHhcC----------------------ChhHHHHHHHHHHhCCC-----------CCCHHHHHHHHHHHHh
Q 039177 207 VDYTNVIRSLVKKE----------------------KVFDALGILNQMKSDGI-----------KPDIVCYTMVLNGVIV 253 (453)
Q Consensus 207 ~~~~~li~~~~~~g----------------------~~~~a~~~~~~m~~~~~-----------~~~~~~~~~ll~~~~~ 253 (453)
.-+..+-++|+... +++-.+.-|+.+..... +-++..|..-.. ..
T Consensus 282 rDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~ 359 (835)
T KOG2047|consen 282 RDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LY 359 (835)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hh
Confidence 33444444443221 11222223333332210 002222222211 12
Q ss_pred cCCHHHHHHHHHHHHHCCCCC------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc
Q 039177 254 QEDYVKAEELFDELLVLGLVP------DVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPD---VITYNTLLQALCKV 324 (453)
Q Consensus 254 ~g~~~~a~~~~~~m~~~g~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~ 324 (453)
.|+..+....|.+..+. +.| -...|..+...|-..|+++.|..+|++..+...+-- ..+|.....+=.+.
T Consensus 360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence 35555666666666542 122 234577778888888999999999888877544321 23555555566677
Q ss_pred CCHHHHHHHHHHHHHCCCC----------c-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 039177 325 RELNRLRELVKEMKWKGIV----------L-------NLQTYSIMIDGLASKGDIIEACGLLEEALNKGL 377 (453)
Q Consensus 325 ~~~~~a~~~~~~~~~~~~~----------p-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 377 (453)
.+++.|+++.+......-. | +...|...++.--..|-++....+++++.+..+
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri 508 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI 508 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Confidence 7788888877765432111 1 344556666666667777777777777766543
No 78
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.87 E-value=1.2e-07 Score=83.79 Aligned_cols=228 Identities=18% Similarity=0.116 Sum_probs=151.6
Q ss_pred hHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHH
Q 039177 169 GKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKP-DIVCYTMV 247 (453)
Q Consensus 169 ~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~l 247 (453)
......+.+++...|.. +.+ ..++.+.. .|.......+...+...++-+.++.-+++........ +.......
T Consensus 35 ~e~~~~~~Rs~iAlg~~--~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~ 108 (290)
T PF04733_consen 35 LERDFYQYRSYIALGQY--DSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLA 108 (290)
T ss_dssp HHHHHHHHHHHHHTT-H--HHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCh--hHH---HHHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHH
Confidence 34556677788888876 433 34444443 5666666555554444355566666665554443332 33332233
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----h
Q 039177 248 LNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALC----K 323 (453)
Q Consensus 248 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~----~ 323 (453)
...+...|++++|++++... .+.......+..|.+.+++|.|.+.++.|.+.+ .|. +...+..++. .
T Consensus 109 A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~-~l~qLa~awv~l~~g 179 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDS-ILTQLAEAWVNLATG 179 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcH-HHHHHHHHHHHHHhC
Confidence 34566779999999887642 456777788899999999999999999998753 443 4444544443 3
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCH-HHHHH
Q 039177 324 VRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLV-RKALE 402 (453)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~ 402 (453)
.+.+.+|..+|+++... ..++..+.+.+..++...|++++|.+++++..+.+ .-+..+...+|......|+. +.+.+
T Consensus 180 ~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~ 257 (290)
T PF04733_consen 180 GEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAER 257 (290)
T ss_dssp TTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred chhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHH
Confidence 45799999999998765 55688899999999999999999999999987665 33566677778888888887 67788
Q ss_pred HHHHHhhCCCCCC
Q 039177 403 LLKQMADKDVSPG 415 (453)
Q Consensus 403 ~~~~m~~~~~~p~ 415 (453)
++.++.. ..|+
T Consensus 258 ~l~qL~~--~~p~ 268 (290)
T PF04733_consen 258 YLSQLKQ--SNPN 268 (290)
T ss_dssp HHHHCHH--HTTT
T ss_pred HHHHHHH--hCCC
Confidence 8888874 3555
No 79
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=3.7e-05 Score=71.44 Aligned_cols=115 Identities=13% Similarity=0.010 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC-
Q 039177 312 ITYNTLLQALCKVRELNRLRELVK--------EMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNK--GLCTQ- 380 (453)
Q Consensus 312 ~~~~~li~~~~~~~~~~~a~~~~~--------~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~- 380 (453)
.+.-..++.....|+++.|.+++. .+.+.+..|. +...++..|.+.++-+.|..++.+.... .-.+.
T Consensus 377 ~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s 454 (652)
T KOG2376|consen 377 VVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS 454 (652)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc
Confidence 344555666778899999999888 5555555444 5556777777877777777777766542 01111
Q ss_pred ---hhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHhchhcc
Q 039177 381 ---SSMFDETICGLCQRGLVRKALELLKQMADKDVSPGARVWEALLLSSVSK 429 (453)
Q Consensus 381 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~ 429 (453)
..++..+...-.+.|+.++|..+++++.+. -.+|..+...++.+|+.-
T Consensus 455 ~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 455 IALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL 505 (652)
T ss_pred hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc
Confidence 223333344456779999999999999863 356788888899888543
No 80
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=2.7e-05 Score=67.75 Aligned_cols=59 Identities=10% Similarity=0.157 Sum_probs=48.4
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC
Q 039177 86 VIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFR 146 (453)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 146 (453)
+...+.+.|++++|...|..+...+ .++..++..|.-++.-.|.+.+|..+-++.++..
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~p 121 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTP 121 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhCCCCh
Confidence 4445567999999999999998864 6777888888888888899999999888877654
No 81
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.83 E-value=1.6e-07 Score=83.06 Aligned_cols=251 Identities=10% Similarity=0.013 Sum_probs=161.1
Q ss_pred HHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCcc
Q 039177 88 KTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCV 167 (453)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p 167 (453)
+...-.|++..++.-.+ .... .-..+.....-+.++|...|+.+.++.-. .. +-.|
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~-~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei---~~-------------------~~~~ 64 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSF-SPENKLERDFYQYRSYIALGQYDSVLSEI---KK-------------------SSSP 64 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTS-TCHHHHHHHHHHHHHHHHTT-HHHHHHHS----T-------------------TSSC
T ss_pred HHHHHhhhHHHHHHHhh-ccCC-CchhHHHHHHHHHHHHHHcCChhHHHHHh---cc-------------------CCCh
Confidence 44556788887776555 2222 11223445666788899999877654422 11 2245
Q ss_pred ChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCC-cChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 039177 168 DGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFC-FGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTM 246 (453)
Q Consensus 168 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 246 (453)
.......+.. |..... ..+.+..-+.+....... .+..........+...|++++|+++++.- .+......
T Consensus 65 ~l~av~~la~-y~~~~~-~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al 136 (290)
T PF04733_consen 65 ELQAVRLLAE-YLSSPS-DKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLAL 136 (290)
T ss_dssp CCHHHHHHHH-HHCTST-THHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHH
T ss_pred hHHHHHHHHH-HHhCcc-chHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHH
Confidence 5554444433 333322 114444433333322222 22233333345666789999999988653 26777788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 039177 247 VLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLC----KQNNVEAGIKMIACMEELGSKPDVITYNTLLQALC 322 (453)
Q Consensus 247 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 322 (453)
.+..|.+.++++.|.+.++.|.+.+ .| .+...+..++. ..+.+.+|..+|+++.+. ..++..+.+.+..+..
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l 212 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHL 212 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHH
Confidence 8999999999999999999998743 33 34444444443 344789999999998764 5678889999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHC
Q 039177 323 KVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDI-IEACGLLEEALNK 375 (453)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~ 375 (453)
..|++++|..++.+....+.. +..+...+|.+....|+. +.+.+++..+...
T Consensus 213 ~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 213 QLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999999999999998877655 677888888888888888 6678888888765
No 82
>PF12854 PPR_1: PPR repeat
Probab=98.79 E-value=8.8e-09 Score=58.24 Aligned_cols=29 Identities=34% Similarity=0.570 Sum_probs=11.4
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 039177 343 VLNLQTYSIMIDGLASKGDIIEACGLLEE 371 (453)
Q Consensus 343 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 371 (453)
.||..||+.||.+|++.|++++|.++|++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 33333333333333333333333333333
No 83
>PF12854 PPR_1: PPR repeat
Probab=98.75 E-value=1.4e-08 Score=57.39 Aligned_cols=34 Identities=29% Similarity=0.566 Sum_probs=32.2
Q ss_pred CCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHh
Q 039177 375 KGLCTQSSMFDETICGLCQRGLVRKALELLKQMA 408 (453)
Q Consensus 375 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (453)
+|+.||..+|+.||.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4789999999999999999999999999999984
No 84
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.74 E-value=0.00016 Score=66.69 Aligned_cols=151 Identities=18% Similarity=0.160 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039177 257 YVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKP-DVITYNTLLQALCKVRELNRLRELVK 335 (453)
Q Consensus 257 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~ 335 (453)
.+....++++++..-..--..+|...|+.-.+..-++.|..+|.+..+.+..+ ++.++++++.-||. ++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 45555666666553323334567777777777777888888888888877766 66677888877765 56688888888
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 039177 336 EMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQS--SMFDETICGLCQRGLVRKALELLKQMAD 409 (453)
Q Consensus 336 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (453)
.-.++--. +..-....++-+...|+-..|..+|++....++.++. .+|..+|.--..-|+...+.++-+++..
T Consensus 426 LGLkkf~d-~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 426 LGLKKFGD-SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHhcCC-ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 76655111 3334456677777788888888888888887555443 5788888877888888888887777653
No 85
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.71 E-value=2.5e-06 Score=80.84 Aligned_cols=221 Identities=11% Similarity=0.018 Sum_probs=176.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHH
Q 039177 113 ETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLG 192 (453)
Q Consensus 113 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~ 192 (453)
+|--.+-..+...+.+.|-...|..+|+++ ..|..++-+|+..|+. ++|..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl---------------------------emw~~vi~CY~~lg~~--~kaee 445 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL---------------------------EMWDPVILCYLLLGQH--GKAEE 445 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH---------------------------HHHHHHHHHHHHhccc--chHHH
Confidence 343344556777788888888888888763 2477788899999987 88888
Q ss_pred HHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 039177 193 FVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGL 272 (453)
Q Consensus 193 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 272 (453)
+..+..+. +||...|..+.+......-+++|.++++..... +-..+.....+.+++.++.+.|+.-.+..
T Consensus 446 i~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n- 515 (777)
T KOG1128|consen 446 INRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN- 515 (777)
T ss_pred HHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-
Confidence 88777763 689999999999999888899999999876432 22333334455799999999999876643
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 039177 273 VPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDV-ITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSI 351 (453)
Q Consensus 273 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 351 (453)
.....+|-..-.+..+.+++..|.+.|..... ..||. ..||.+-.+|.+.++..+|...+.+..+.+.. +...|..
T Consensus 516 plq~~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWEN 592 (777)
T KOG1128|consen 516 PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWEN 592 (777)
T ss_pred ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeec
Confidence 24567788888888899999999999999887 45665 58999999999999999999999999998855 6677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 352 MIDGLASKGDIIEACGLLEEALNK 375 (453)
Q Consensus 352 li~~~~~~g~~~~A~~~~~~m~~~ 375 (453)
.+....+-|.+++|.+.+..+...
T Consensus 593 ymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 593 YMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHh
Confidence 888889999999999999887653
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.69 E-value=0.00012 Score=68.01 Aligned_cols=270 Identities=10% Similarity=-0.024 Sum_probs=164.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCccChHhH-HHHHHHHHhcCCCChHHHHHHH
Q 039177 116 EFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCVDGKTC-SLILSSVCEQRDLSSDELLGFV 194 (453)
Q Consensus 116 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~~~a~~~~ 194 (453)
.-.+..+...+...|+.+++...+....+. ... .++.... ......+...|+. +++.+++
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~---------------~~~--~~~~~e~~~~~a~~~~~~g~~--~~A~~~~ 66 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQA---------------LAA--RATERERAHVEALSAWIAGDL--PKALALL 66 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHH---------------hcc--CCCHHHHHHHHHHHHHHcCCH--HHHHHHH
Confidence 445556666677777777776655543221 111 1222211 1222335666777 8999999
Q ss_pred HHHHHcCCCcChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 195 QEMKKLGFCFGMVDYTNVIRSLVK----KEKVFDALGILNQMKSDGIKPD-IVCYTMVLNGVIVQEDYVKAEELFDELLV 269 (453)
Q Consensus 195 ~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 269 (453)
++..+.. +.+...+.. ...+.. .+..+.+.+.+... ....|+ ......+...+...|++++|...+++..+
T Consensus 67 ~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~ 142 (355)
T cd05804 67 EQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE 142 (355)
T ss_pred HHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9988764 344444442 223333 34555555555441 122233 34445566788899999999999999988
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CcC
Q 039177 270 LGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGS-KPDV--ITYNTLLQALCKVRELNRLRELVKEMKWKGI-VLN 345 (453)
Q Consensus 270 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~p~ 345 (453)
.. +.+...+..+..+|...|++++|...++....... .++. ..|..+...+...|++++|..+++....... .+.
T Consensus 143 ~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~ 221 (355)
T cd05804 143 LN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDP 221 (355)
T ss_pred hC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCCh
Confidence 65 34566778888899999999999999999887432 1232 3456788899999999999999999865433 122
Q ss_pred HHHH-H--HHHHHHHhcCCHHHHHHH--HHHHHHCCC--CCChhhHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 039177 346 LQTY-S--IMIDGLASKGDIIEACGL--LEEALNKGL--CTQSSMFDETICGLCQRGLVRKALELLKQMAD 409 (453)
Q Consensus 346 ~~~~-~--~li~~~~~~g~~~~A~~~--~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (453)
.... + .++.-+...|..+.+.+. +........ ............++...|+.++|..+++.+..
T Consensus 222 ~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 222 ALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred HHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 2211 1 333344444543333332 111111110 11112223566778899999999999999876
No 87
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.68 E-value=0.00022 Score=67.14 Aligned_cols=325 Identities=10% Similarity=0.060 Sum_probs=210.0
Q ss_pred hhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC-------------
Q 039177 80 PEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFR------------- 146 (453)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------------- 146 (453)
+..|-..+..+.++|++......|+.....-.+.-...+|...+...-..|-++-++.+|++..+..
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAK 181 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 4567777888889999999999999988775555566789999999999999999999999877765
Q ss_pred CCcHHHHHHHHHHHHHCC------CccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC--CcC--hhhHHHHHHHH
Q 039177 147 INRVGFAIEILNCMINDG------FCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGF--CFG--MVDYTNVIRSL 216 (453)
Q Consensus 147 ~~~~~~a~~~~~~m~~~~------~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~--~~~--~~~~~~li~~~ 216 (453)
.+++++|-+.+...+... .+-+...|..+-...++..+. -..+.+ +.+.+.|+ -+| ...|++|.+-|
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~--~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDK--VQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcch--hcccCH-HHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 567777777766665421 233444566655555554443 111211 22333332 123 34599999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------------------CHHHHHHHHHHHHHCCC--
Q 039177 217 VKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQE----------------------DYVKAEELFDELLVLGL-- 272 (453)
Q Consensus 217 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g----------------------~~~~a~~~~~~m~~~g~-- 272 (453)
.+.|.+++|..+|++.... ..++.-|+.+..+|+.-. +++-...-|+.+...+.
T Consensus 259 Ir~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~ 336 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLL 336 (835)
T ss_pred HHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchH
Confidence 9999999999999998764 234555556666555321 12233333444333210
Q ss_pred ---------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039177 273 ---------VPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPD------VITYNTLLQALCKVRELNRLRELVKEM 337 (453)
Q Consensus 273 ---------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~------~~~~~~li~~~~~~~~~~~a~~~~~~~ 337 (453)
..++..|..-+. ...|+..+...+|.+..+. +.|- ...|..+...|-..|+++.|..+|+..
T Consensus 337 lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 337 LNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred HHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 123334433332 3456677777888777653 2232 346889999999999999999999999
Q ss_pred HHCCCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----------CCCCCh------hhHHHHHHHHHhCCCH
Q 039177 338 KWKGIVLN---LQTYSIMIDGLASKGDIIEACGLLEEALNK-----------GLCTQS------SMFDETICGLCQRGLV 397 (453)
Q Consensus 338 ~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----------~~~~~~------~~~~~li~~~~~~g~~ 397 (453)
.+...+-- ..+|..-..+-.++.+++.|.++.+..... +..+.. .+|...++-.-..|-+
T Consensus 414 ~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf 493 (835)
T KOG2047|consen 414 TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF 493 (835)
T ss_pred hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 88754422 346666667777888999999988876532 111122 2334444444556777
Q ss_pred HHHHHHHHHHhhCCC
Q 039177 398 RKALELLKQMADKDV 412 (453)
Q Consensus 398 ~~A~~~~~~m~~~~~ 412 (453)
+....+++++.+..+
T Consensus 494 estk~vYdriidLri 508 (835)
T KOG2047|consen 494 ESTKAVYDRIIDLRI 508 (835)
T ss_pred HHHHHHHHHHHHHhc
Confidence 777777777766443
No 88
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.68 E-value=8.7e-06 Score=82.50 Aligned_cols=209 Identities=11% Similarity=0.018 Sum_probs=138.7
Q ss_pred CcChhhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 039177 203 CFGMVDYTNVIRSLVKKEKVFDALGILNQMKSD-GIKP---DIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYT 278 (453)
Q Consensus 203 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 278 (453)
+-+...|-..|....+.+++++|.+++++.... ++.- -.-.|.++++.-...|.-+...++|++..+.. .....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 334556777777777777788887777777642 1111 12356666666666677777777777777642 23455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHH
Q 039177 279 YNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIV-LNLQTYSIMIDGLA 357 (453)
Q Consensus 279 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~ 357 (453)
|..|...|.+.+..++|-++++.|.+. ..-....|...+..+.+.++-+.|..++.+..+.=++ -......-.++.-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 667777777777788888888777764 2235567777777777777777777777777665221 12334455555666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCC
Q 039177 358 SKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADKDVSPG 415 (453)
Q Consensus 358 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 415 (453)
+.|+.+.+..+|+...... +--...|+..|+.-.++|+.+.+..+|++....++.|.
T Consensus 1612 k~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred hcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 7778888888887776653 22345677777777777888888888888777777664
No 89
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=6.8e-05 Score=62.88 Aligned_cols=172 Identities=11% Similarity=0.057 Sum_probs=111.5
Q ss_pred HHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039177 192 GFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLG 271 (453)
Q Consensus 192 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 271 (453)
++.+.+.......+......-...|++.|++++|++..+... +......=...+.+..+++.|.+.+++|.+.
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i- 166 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI- 166 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-
Confidence 344444444333343334444566788888888888877622 3334444445566777888888888888763
Q ss_pred CCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH
Q 039177 272 LVPDVYTYNVYINGLCK----QNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQ 347 (453)
Q Consensus 272 ~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 347 (453)
.+..+.+-|..++.+ .+.+.+|.-+|++|.+. ..|+..+.+....++...|++++|..++++.+.+... ++.
T Consensus 167 --ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpe 242 (299)
T KOG3081|consen 167 --DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPE 242 (299)
T ss_pred --chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHH
Confidence 455666656555543 45678888888888763 4577888888888888888888888888888887665 566
Q ss_pred HHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 039177 348 TYSIMIDGLASKGDIIEA-CGLLEEALN 374 (453)
Q Consensus 348 ~~~~li~~~~~~g~~~~A-~~~~~~m~~ 374 (453)
+...+|.+-...|...++ .+.+...+.
T Consensus 243 tL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 243 TLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 666666655556655443 344444443
No 90
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=8.7e-05 Score=73.16 Aligned_cols=290 Identities=13% Similarity=0.128 Sum_probs=181.3
Q ss_pred CChhhHHHHHHHHHhcCCcchHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC----------
Q 039177 78 PPPEAYHFVIKTLAENSQFCDISSVLDHIEKR-ENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFR---------- 146 (453)
Q Consensus 78 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---------- 146 (453)
.||+..+..++++...+-+.+..++++.+.-. +.+.-+...-|.|+-...+.. .....+..+++...+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad-~trVm~YI~rLdnyDa~~ia~iai~ 1060 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKAD-RTRVMEYINRLDNYDAPDIAEIAIE 1060 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcC-hHHHHHHHHHhccCCchhHHHHHhh
Confidence 46667777788888888888888888887644 234445556666666655544 345555666655544
Q ss_pred CCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHH
Q 039177 147 INRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDAL 226 (453)
Q Consensus 147 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 226 (453)
.+.+++|+.+|.... .+....+.|+.- .+.+ +.|.++-+.. -...+|..+..+-.+.|.+.+|+
T Consensus 1061 ~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~l--dRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAi 1124 (1666)
T KOG0985|consen 1061 NQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSL--DRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAI 1124 (1666)
T ss_pred hhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhH--HHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHH
Confidence 567777888776542 344455555542 3344 5555543332 13567888888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039177 227 GILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELG 306 (453)
Q Consensus 227 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 306 (453)
+-|-+.- |...|.-++....+.|.+++-...+.-..+...+|.+. +.+|-+|++.+++.+.+++.
T Consensus 1125 eSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi------- 1189 (1666)
T KOG0985|consen 1125 ESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI------- 1189 (1666)
T ss_pred HHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------
Confidence 8775543 67788888888888888888888777666655555444 46778888888877655433
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH---------------
Q 039177 307 SKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEE--------------- 371 (453)
Q Consensus 307 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--------------- 371 (453)
..|+....-.+.+-|...|.++.|.-+|.. +.-|..|...+...|++..|...-++
T Consensus 1190 ~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1190 AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACV 1260 (1666)
T ss_pred cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHh
Confidence 126666666666666666666666655542 23344444444444444443332222
Q ss_pred ---------HHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHh
Q 039177 372 ---------ALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMA 408 (453)
Q Consensus 372 ---------m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (453)
|...++.....-...++.-|...|-+++.+.+++.-.
T Consensus 1261 d~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1261 DKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred chhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 2122223333445667778888888888888777655
No 91
>PLN02789 farnesyltranstransferase
Probab=98.65 E-value=7.4e-05 Score=67.24 Aligned_cols=200 Identities=11% Similarity=0.024 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH--HHHHHHH
Q 039177 188 DELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKE-KVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDY--VKAEELF 264 (453)
Q Consensus 188 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~--~~a~~~~ 264 (453)
++|+.+.++++... +-+..+|+.--..+...| ++++++..++++.+...+ +..+|+.-...+.+.|+. +++..++
T Consensus 54 erAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~ 131 (320)
T PLN02789 54 PRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFT 131 (320)
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHH
Confidence 56666666655543 223334554444555555 456666666666655444 444555444444444442 4556666
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CC----HHHHHHHHHHH
Q 039177 265 DELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKV---RE----LNRLRELVKEM 337 (453)
Q Consensus 265 ~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---~~----~~~a~~~~~~~ 337 (453)
+.+++.. .-+..+|+....++...|+++++++.+.++++.+.. +...|+.....+.+. |. .++.......+
T Consensus 132 ~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~a 209 (320)
T PLN02789 132 RKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDA 209 (320)
T ss_pred HHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHH
Confidence 6665543 235566666666666666666666666666665433 344444443333332 21 23455555555
Q ss_pred HHCCCCcCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 039177 338 KWKGIVLNLQTYSIMIDGLASK----GDIIEACGLLEEALNKGLCTQSSMFDETICGLCQ 393 (453)
Q Consensus 338 ~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 393 (453)
+...+. |...|+-+...+... ++..+|...+.+....+ ..+......|+..|+.
T Consensus 210 I~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 210 ILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 555444 556666666666552 23345666666655433 2334445556666654
No 92
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=8.7e-05 Score=66.09 Aligned_cols=271 Identities=10% Similarity=0.002 Sum_probs=160.7
Q ss_pred CCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHH
Q 039177 76 CEPPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIE 155 (453)
Q Consensus 76 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~ 155 (453)
.+-|......+.+.+...|+..+|...|+.....+ +-+........-.+...|+.++.-.+...+....
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~--------- 296 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV--------- 296 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh---------
Confidence 44566777888999999999999999999988652 2222223333334456676666555544422210
Q ss_pred HHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 039177 156 ILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSD 235 (453)
Q Consensus 156 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 235 (453)
+-+..-|-.-+......++. ..|+.+-+..++.. +-++..|-.-...+...|+.++|.-.|+.....
T Consensus 297 ----------~~ta~~wfV~~~~l~~~K~~--~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 297 ----------KYTASHWFVHAQLLYDEKKF--ERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred ----------hcchhhhhhhhhhhhhhhhH--HHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 01111222222233344444 56666655555543 233444444455666777777777777777654
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCCCHH-
Q 039177 236 GIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYI-NGLC-KQNNVEAGIKMIACMEELGSKPDVI- 312 (453)
Q Consensus 236 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li-~~~~-~~~~~~~a~~~~~~m~~~~~~p~~~- 312 (453)
.+. +...|.-|+.+|...|.+.+|.-.-+...+. +..+..+.+.+. ..|. ...--++|..+++.-.+ +.|+-.
T Consensus 364 ap~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~ 439 (564)
T KOG1174|consen 364 APY-RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTP 439 (564)
T ss_pred chh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHH
Confidence 322 6677777787777777777776655544331 123444444331 2222 22234667777776665 335532
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039177 313 TYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKG 376 (453)
Q Consensus 313 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 376 (453)
..+.+...|...|..+++..+++..+.. .||...-+.|.+.+...+.+.+|...|......+
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 4556666777777777777777766654 5577777777777777777777777777766544
No 93
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.64 E-value=3.9e-05 Score=77.98 Aligned_cols=208 Identities=12% Similarity=0.032 Sum_probs=104.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCcc---ChHhHHHHHHHHHhcCCCChHH
Q 039177 113 ETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCV---DGKTCSLILSSVCEQRDLSSDE 189 (453)
Q Consensus 113 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~~~ 189 (453)
|-+...|-..|......++++.|++++++.... -++.- -...|.++++.-..-|.- +.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-----------------IN~REeeEKLNiWiA~lNlEn~yG~e--es 1515 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-----------------INFREEEEKLNIWIAYLNLENAYGTE--ES 1515 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-----------------CCcchhHHHHHHHHHHHhHHHhhCcH--HH
Confidence 445667777777777777777777777763321 00000 011344444443334433 55
Q ss_pred HHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 190 LLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLV 269 (453)
Q Consensus 190 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 269 (453)
..++|+++.+.- -...+|..|...|.+.+.+++|.++++.|.+.- .-....|...+..+.+..+-+.|..++.+.++
T Consensus 1516 l~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1516 LKKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred HHHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 556666655542 112345556666666666666666666665531 12444555555555555555555555555544
Q ss_pred CCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 039177 270 LGLV-PDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIV 343 (453)
Q Consensus 270 ~g~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 343 (453)
.-.+ -......-.+..-.+.|+.+.+..+|+.....-.+ -...|+..|++-.++|+.+.++.+|+++...++.
T Consensus 1593 ~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1593 SLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 2100 01222233333334555555555555555443211 2334555555555555555555555555555443
No 94
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.64 E-value=0.00047 Score=65.05 Aligned_cols=322 Identities=15% Similarity=0.120 Sum_probs=200.7
Q ss_pred CChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC-----------
Q 039177 78 PPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFR----------- 146 (453)
Q Consensus 78 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----------- 146 (453)
-+...|+.+.-......++++|+..|....+-+ +.|..++.-+--.-++.|+++.....-..+.+..
T Consensus 73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~A 150 (700)
T KOG1156|consen 73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFA 150 (700)
T ss_pred ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHH
Confidence 445667777777777888899999998888764 6677777776666666666655554443333322
Q ss_pred -----CCcHHHHHHHHHHHHHCCC-ccChHhHHHHHH------HHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHH
Q 039177 147 -----INRVGFAIEILNCMINDGF-CVDGKTCSLILS------SVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIR 214 (453)
Q Consensus 147 -----~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~------~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 214 (453)
.|++..|..+++....... .|+...|..... ...+.|.. +.+.+.+..-... +.-....-..-..
T Consensus 151 vs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~--q~ale~L~~~e~~-i~Dkla~~e~ka~ 227 (700)
T KOG1156|consen 151 VAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSL--QKALEHLLDNEKQ-IVDKLAFEETKAD 227 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccH--HHHHHHHHhhhhH-HHHHHHHhhhHHH
Confidence 6888889999888887553 466665544332 23455555 6666554433221 1112223345567
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHH-HHHHHHH------------------------
Q 039177 215 SLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLN-GVIVQEDYVKAE-ELFDELL------------------------ 268 (453)
Q Consensus 215 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~-~~~~~g~~~~a~-~~~~~m~------------------------ 268 (453)
.+.+.+++++|..++..+... .||...|.-.+. ++.+..+.-++. .+|....
T Consensus 228 l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~ 305 (700)
T KOG1156|consen 228 LLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKE 305 (700)
T ss_pred HHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHH
Confidence 788899999999999999987 456555554443 443233322222 4443332
Q ss_pred ----------HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CC----------CCCCH--HHHHHHHHHHH
Q 039177 269 ----------VLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEE----LG----------SKPDV--ITYNTLLQALC 322 (453)
Q Consensus 269 ----------~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~----------~~p~~--~~~~~li~~~~ 322 (453)
+.|+ +.++..+.+.|-.-...+-..++.-.+.. .| -.|.. +++-.++..|-
T Consensus 306 ~vdkyL~~~l~Kg~---p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D 382 (700)
T KOG1156|consen 306 IVDKYLRPLLSKGV---PSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYD 382 (700)
T ss_pred HHHHHHHHHhhcCC---CchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHH
Confidence 2222 22333333333332222211122111111 11 13444 35566788899
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHH
Q 039177 323 KVRELNRLRELVKEMKWKGIVLNL-QTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKAL 401 (453)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 401 (453)
+.|+++.|...++....+ .|+. ..|..=.+.+...|++++|..++++..+.+ .+|..+-..-..-..++++.++|.
T Consensus 383 ~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~ 459 (700)
T KOG1156|consen 383 KLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAE 459 (700)
T ss_pred HcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHH
Confidence 999999999999998877 3343 345555688899999999999999998876 456554334556667889999999
Q ss_pred HHHHHHhhCCC
Q 039177 402 ELLKQMADKDV 412 (453)
Q Consensus 402 ~~~~~m~~~~~ 412 (453)
++.......|.
T Consensus 460 ~~~skFTr~~~ 470 (700)
T KOG1156|consen 460 EVLSKFTREGF 470 (700)
T ss_pred HHHHHhhhccc
Confidence 99999988775
No 95
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.63 E-value=5.1e-06 Score=76.79 Aligned_cols=222 Identities=11% Similarity=-0.010 Sum_probs=170.6
Q ss_pred HHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 039177 179 VCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYV 258 (453)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 258 (453)
+.+.|++ .+|.-.|+..++.. +-+...|.-|.......++-..|+..+++..+..+. |....-.|.-.|...|.-.
T Consensus 295 lm~nG~L--~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 295 LMKNGDL--SEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHhcCCc--hHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHH
Confidence 4567777 78888888888776 567889999999999999999999999999987655 7888888889999999999
Q ss_pred HHHHHHHHHHHCCCC--------CChhhHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHH
Q 039177 259 KAEELFDELLVLGLV--------PDVYTYNVYINGLCKQNNVEAGIKMIACME-ELGSKPDVITYNTLLQALCKVRELNR 329 (453)
Q Consensus 259 ~a~~~~~~m~~~g~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~~~~p~~~~~~~li~~~~~~~~~~~ 329 (453)
.|...++.-+....+ ++...-.. ..+.....+....++|-++. ..+..+|..+...|.-.|--.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999887654310 00000000 11222233445556665544 44545788888899889999999999
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHh
Q 039177 330 LRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQ-SSMFDETICGLCQRGLVRKALELLKQMA 408 (453)
Q Consensus 330 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (453)
|.+.|+..+...+. |..+||-|...++...+..+|+..+++..+. .|+ +.....|..+|...|.+++|.+.|=..+
T Consensus 449 aiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999998766 8899999999999999999999999999886 343 2333445668999999999999887755
Q ss_pred h
Q 039177 409 D 409 (453)
Q Consensus 409 ~ 409 (453)
.
T Consensus 526 ~ 526 (579)
T KOG1125|consen 526 S 526 (579)
T ss_pred H
Confidence 3
No 96
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=8e-06 Score=69.32 Aligned_cols=92 Identities=9% Similarity=0.030 Sum_probs=44.7
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH-HHHH
Q 039177 172 CSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTM-VLNG 250 (453)
Q Consensus 172 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~-ll~~ 250 (453)
+.+++..+.+..++ +.+.+++..-.+.. +.+......|..+|....++..|-..++++... .|...-|.. -...
T Consensus 13 ftaviy~lI~d~ry--~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 13 FTAVVYRLIRDARY--ADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQS 87 (459)
T ss_pred hHHHHHHHHHHhhH--HHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence 44444444454555 55555555444443 224445555555666666666666666655543 222222221 1223
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 039177 251 VIVQEDYVKAEELFDELL 268 (453)
Q Consensus 251 ~~~~g~~~~a~~~~~~m~ 268 (453)
+.+.+.+.+|+++...|.
T Consensus 88 LY~A~i~ADALrV~~~~~ 105 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLL 105 (459)
T ss_pred HHHhcccHHHHHHHHHhc
Confidence 344555555555555544
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.60 E-value=0.00027 Score=74.46 Aligned_cols=238 Identities=11% Similarity=0.031 Sum_probs=155.4
Q ss_pred hHHHHHHHHHhcCCCChHHHHHHHHHHHHc----CC-CcChhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC--C
Q 039177 171 TCSLILSSVCEQRDLSSDELLGFVQEMKKL----GF-CFGMVDYTNVIRSLVKKEKVFDALGILNQMKSD----GIK--P 239 (453)
Q Consensus 171 ~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~--~ 239 (453)
..+.+...+...|+. +++...+++.... |. .....++..+...+...|+++.|...+++.... +.. +
T Consensus 493 a~~~lg~~~~~~G~~--~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 570 (903)
T PRK04841 493 ATSVLGEVHHCKGEL--ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP 570 (903)
T ss_pred HHHHHHHHHHHcCCH--HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 345555667788888 8898888877643 21 111234566777888999999999998887652 211 1
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHH
Q 039177 240 -DIVCYTMVLNGVIVQEDYVKAEELFDELLVLG--LVP--DVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKP-DVIT 313 (453)
Q Consensus 240 -~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g--~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~ 313 (453)
....+..+...+...|++++|...+.+..... ..+ ....+..+...+...|+.+.|.+.+.......... ....
T Consensus 571 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~ 650 (903)
T PRK04841 571 MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSD 650 (903)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHh
Confidence 22334455566777899999999998875521 112 23334445667788999999999988875421111 1111
Q ss_pred H-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-
Q 039177 314 Y-----NTLLQALCKVRELNRLRELVKEMKWKGIVLN---LQTYSIMIDGLASKGDIIEACGLLEEALNK----GLCTQ- 380 (453)
Q Consensus 314 ~-----~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~- 380 (453)
+ ...+..+...|+.+.|...+........... ...+..+..++...|+.++|...+++.... |....
T Consensus 651 ~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~ 730 (903)
T PRK04841 651 WIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDL 730 (903)
T ss_pred HhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHH
Confidence 1 1123445668899999999877554322111 112346677888999999999999987653 32222
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHhhC
Q 039177 381 SSMFDETICGLCQRGLVRKALELLKQMADK 410 (453)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 410 (453)
..+...+..++.+.|+.++|...+.+..+.
T Consensus 731 a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 731 NRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 234555667888999999999999998864
No 98
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.57 E-value=2.3e-05 Score=68.13 Aligned_cols=186 Identities=10% Similarity=0.043 Sum_probs=126.2
Q ss_pred CcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh---
Q 039177 203 CFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIK-P-DIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVY--- 277 (453)
Q Consensus 203 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~--- 277 (453)
......+..+...+.+.|++++|...|+++...... | ...++..+..++...|++++|...++++.+.. |+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchH
Confidence 345667888888999999999999999998875332 1 12466778888999999999999999998754 3222
Q ss_pred -hHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH
Q 039177 278 -TYNVYINGLCKQ--------NNVEAGIKMIACMEELGSKPDVI-TYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQ 347 (453)
Q Consensus 278 -~~~~li~~~~~~--------~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 347 (453)
++..+..++.+. |+.++|.+.|+.+.+.. |+.. .+..+.... . .... .. .
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~-~---~~~~------~~--------~ 167 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMD-Y---LRNR------LA--------G 167 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHH-H---HHHH------HH--------H
Confidence 344444555544 67888888888888753 4432 222221110 0 0000 00 0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhC
Q 039177 348 TYSIMIDGLASKGDIIEACGLLEEALNKGL--CTQSSMFDETICGLCQRGLVRKALELLKQMADK 410 (453)
Q Consensus 348 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 410 (453)
....+...|.+.|++.+|...++...+... ......+..+..++.+.|++++|..+++.+...
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 112455678889999999999999887631 123457778889999999999999998888643
No 99
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.57 E-value=1.8e-05 Score=68.70 Aligned_cols=186 Identities=9% Similarity=-0.060 Sum_probs=130.5
Q ss_pred cChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcC---hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH--
Q 039177 167 VDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFG---MVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDI-- 241 (453)
Q Consensus 167 p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-- 241 (453)
.....+..+...+...|+. +.|...++++.... +.+ ..++..+..+|.+.|++++|+..++++.+.......
T Consensus 31 ~~~~~~~~~g~~~~~~~~~--~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDY--TEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred CCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 3556777888889999999 99999999988764 222 246788899999999999999999999886443222
Q ss_pred HHHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 039177 242 VCYTMVLNGVIVQ--------EDYVKAEELFDELLVLGLVPDV-YTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVI 312 (453)
Q Consensus 242 ~~~~~ll~~~~~~--------g~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 312 (453)
.++..+..++... |+.++|.+.|+.+.+.. |+. ..+..+... .. ... ... .
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~-~~---~~~------~~~--------~ 167 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRM-DY---LRN------RLA--------G 167 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHH-HH---HHH------HHH--------H
Confidence 2455555556554 78899999999998753 443 222222111 00 000 000 0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 313 TYNTLLQALCKVRELNRLRELVKEMKWKGI-VL-NLQTYSIMIDGLASKGDIIEACGLLEEALNK 375 (453)
Q Consensus 313 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 375 (453)
....+...|.+.|++++|...+....+... .| ....+..+..++.+.|++++|..+++.+...
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 112455678899999999999999887633 12 4568889999999999999999998887654
No 100
>PLN02789 farnesyltranstransferase
Probab=98.56 E-value=0.00014 Score=65.40 Aligned_cols=216 Identities=7% Similarity=0.002 Sum_probs=140.4
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHhhcccCCCCcHHHHHHHHHHHH
Q 039177 83 YHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAH-RFQDSVNLFYKIPKFRINRVGFAIEILNCMI 161 (453)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~ 161 (453)
+..+-..+...+..++|+.+.+.+.+.. +.+..+|+..-..+...| .+++++..++++ .
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~------------------i 99 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDV------------------A 99 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHH------------------H
Confidence 3344455666788999999999999874 555667777766666666 467777766663 3
Q ss_pred HCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 039177 162 NDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDI 241 (453)
Q Consensus 162 ~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 241 (453)
... +-+..+|+.-...+.+.+....+++..+++.+.+.. +-+..+|+.....+...|+++++++.++++.+.++. |.
T Consensus 100 ~~n-pknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~ 176 (320)
T PLN02789 100 EDN-PKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NN 176 (320)
T ss_pred HHC-CcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-ch
Confidence 321 224445655444444555421145677777777765 557788888888888889999999999999887766 67
Q ss_pred HHHHHHHHHHHhc---CCH----HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCC
Q 039177 242 VCYTMVLNGVIVQ---EDY----VKAEELFDELLVLGLVPDVYTYNVYINGLCKQ----NNVEAGIKMIACMEELGSKPD 310 (453)
Q Consensus 242 ~~~~~ll~~~~~~---g~~----~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~p~ 310 (453)
.+|+.....+.+. |.. +..++...+++... +-|...|+.+...+... +...+|.+.+.+..+.++ .+
T Consensus 177 sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s 254 (320)
T PLN02789 177 SAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NH 254 (320)
T ss_pred hHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-Cc
Confidence 7777766655554 222 35566665665543 34667777777777662 334557777766665432 25
Q ss_pred HHHHHHHHHHHHh
Q 039177 311 VITYNTLLQALCK 323 (453)
Q Consensus 311 ~~~~~~li~~~~~ 323 (453)
......|+..|+.
T Consensus 255 ~~al~~l~d~~~~ 267 (320)
T PLN02789 255 VFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHHh
Confidence 5567777777764
No 101
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.56 E-value=5.4e-05 Score=75.99 Aligned_cols=220 Identities=8% Similarity=-0.004 Sum_probs=110.4
Q ss_pred ChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHH
Q 039177 79 PPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILN 158 (453)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~ 158 (453)
+...+..|+..+...+++++|.++.+...+.. +-....|-.+...|.+.++.+++..+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv-------------------- 87 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL-------------------- 87 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh--------------------
Confidence 35566777777777888888888877666653 22222333333366666665555443
Q ss_pred HHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 039177 159 CMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIK 238 (453)
Q Consensus 159 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 238 (453)
.++.......++ ..+..+...+.+.+ -+...+..+..+|-+.|+.++|..+|+++.+..+.
T Consensus 88 ---------------~~l~~~~~~~~~--~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~ 148 (906)
T PRK14720 88 ---------------NLIDSFSQNLKW--AIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD 148 (906)
T ss_pred ---------------hhhhhcccccch--hHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc
Confidence 122222222222 33333333333322 23335555566666666666666666666655533
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC------------
Q 039177 239 PDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELG------------ 306 (453)
Q Consensus 239 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------------ 306 (453)
|..+.|.+...|... ++++|++++.+.... |...+++..+.+++..+....
T Consensus 149 -n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ 211 (906)
T PRK14720 149 -NPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIER 211 (906)
T ss_pred -cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHH
Confidence 555556666555555 666666555555442 333334444444444444322
Q ss_pred -------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 039177 307 -------SKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLA 357 (453)
Q Consensus 307 -------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 357 (453)
...-+.++-.+-..|-..++++++..+++.+++.... |.....-++.+|.
T Consensus 212 ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 212 KVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 1112223333444455555555555555555555433 4444444444443
No 102
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.55 E-value=3.4e-05 Score=64.48 Aligned_cols=149 Identities=9% Similarity=0.065 Sum_probs=97.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 039177 213 IRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNV 292 (453)
Q Consensus 213 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~ 292 (453)
+..|...|+++.+....+.+... . ..+...++.+++...++..++.. +.|...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~----~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP----L--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc----c--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 44566777776654443222111 0 01222556666666666666544 35677777777778888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCC--HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 039177 293 EAGIKMIACMEELGSKPDVITYNTLLQA-LCKVRE--LNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLL 369 (453)
Q Consensus 293 ~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~--~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 369 (453)
++|...|+...+.... +...+..+..+ +...|+ .++|.+++++..+.+.. +...+..+...+...|++++|+..|
T Consensus 90 ~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888877775422 45566666665 356666 47888888888777666 6677777777777888888888888
Q ss_pred HHHHHCC
Q 039177 370 EEALNKG 376 (453)
Q Consensus 370 ~~m~~~~ 376 (453)
+++.+..
T Consensus 168 ~~aL~l~ 174 (198)
T PRK10370 168 QKVLDLN 174 (198)
T ss_pred HHHHhhC
Confidence 8877654
No 103
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.53 E-value=3.6e-05 Score=64.34 Aligned_cols=155 Identities=11% Similarity=0.088 Sum_probs=119.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 039177 248 LNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVREL 327 (453)
Q Consensus 248 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 327 (453)
+..|...|+++.+......+.. |. . .+...++.+++...++...+... .|...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCH
Confidence 3568899999887655433221 11 1 12236677888888888777543 4778999999999999999
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHH-HHhcCC--HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHH
Q 039177 328 NRLRELVKEMKWKGIVLNLQTYSIMIDG-LASKGD--IIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELL 404 (453)
Q Consensus 328 ~~a~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 404 (453)
++|...|+...+.... +...+..+..+ |...|+ .++|.+++++..+.+ .-+...+..+...+.+.|++++|+..|
T Consensus 90 ~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999998766 78888888886 467777 599999999999886 346677888889999999999999999
Q ss_pred HHHhhCCCCCCHHH
Q 039177 405 KQMADKDVSPGARV 418 (453)
Q Consensus 405 ~~m~~~~~~p~~~~ 418 (453)
+++.+. ..|+..-
T Consensus 168 ~~aL~l-~~~~~~r 180 (198)
T PRK10370 168 QKVLDL-NSPRVNR 180 (198)
T ss_pred HHHHhh-CCCCccH
Confidence 999864 3444433
No 104
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.51 E-value=7.9e-05 Score=71.04 Aligned_cols=57 Identities=14% Similarity=0.134 Sum_probs=33.7
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhccc
Q 039177 85 FVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPK 144 (453)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 144 (453)
+.|+.|.+.|.+..|.+....-. .+..|..+...+..++.+..-+++|-.+|+++..
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~---~l~~de~il~~ia~alik~elydkagdlfeki~d 676 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDE---ELLADEEILEHIAAALIKGELYDKAGDLFEKIHD 676 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHH---HhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC
Confidence 45667777777776665432221 2345566666666666666666666666666543
No 105
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.48 E-value=4.9e-05 Score=72.42 Aligned_cols=213 Identities=14% Similarity=0.034 Sum_probs=164.4
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 039177 174 LILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIV 253 (453)
Q Consensus 174 ~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 253 (453)
.+...+...|-. ..|..+|+.+ ..|.-+|.+|...|+..+|..+..+..++ +||...|..+......
T Consensus 403 ~laell~slGit--ksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 403 LLAELLLSLGIT--KSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHcchH--HHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccC
Confidence 344556666766 7777777654 45678889999999999999988888773 6788888888877777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 039177 254 QEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLREL 333 (453)
Q Consensus 254 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 333 (453)
..-+++|.++.+..-.. +-..+.....+.++++++.+.|+.-.+.+. ....+|-.+..++.+.++++.|.+.
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHHH
Confidence 66778888887765331 111222223447889999999988776431 2456888888889999999999999
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 039177 334 VKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMAD 409 (453)
Q Consensus 334 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (453)
|.......+. +...||.+-.+|.+.|+-.+|...+.+..+.+..++ .+|...+....+.|.+++|++.+.++.+
T Consensus 542 F~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w-~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 542 FHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHW-QIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCC-eeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 9988877554 678999999999999999999999999998875444 4466667778899999999999999876
No 106
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.45 E-value=1.7e-05 Score=62.65 Aligned_cols=101 Identities=12% Similarity=-0.030 Sum_probs=56.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCC
Q 039177 316 TLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRG 395 (453)
Q Consensus 316 ~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 395 (453)
.+...+.+.|++++|...|+......+. +...|..+..++...|++++|...|+.....+ ..+...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 3445555566666666666665555433 55555666666666666666666666665543 234445555555566666
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHH
Q 039177 396 LVRKALELLKQMADKDVSPGARVWE 420 (453)
Q Consensus 396 ~~~~A~~~~~~m~~~~~~p~~~~~~ 420 (453)
++++|+..|+... .+.|+...+.
T Consensus 107 ~~~eAi~~~~~Al--~~~p~~~~~~ 129 (144)
T PRK15359 107 EPGLAREAFQTAI--KMSYADASWS 129 (144)
T ss_pred CHHHHHHHHHHHH--HhCCCChHHH
Confidence 6666666666655 2344443333
No 107
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=0.0005 Score=60.15 Aligned_cols=207 Identities=13% Similarity=0.080 Sum_probs=130.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHHCCCCCChh-hHHHHHH
Q 039177 211 NVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLN-----GVIVQEDYVKAEELFDELLVLGLVPDVY-TYNVYIN 284 (453)
Q Consensus 211 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~-----~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~ 284 (453)
.|+--|.+.+++++|..+..++.-- .|-......+.. -........-|.+.|...-+++..-|.. .-.++.+
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMAS 367 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence 4555677888888888877666421 222222111111 1111223455666665554555444433 3455666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHH-HHHHHHhcCCHH
Q 039177 285 GLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSI-MIDGLASKGDII 363 (453)
Q Consensus 285 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~-li~~~~~~g~~~ 363 (453)
++.-..++|+++-.+..+...=..-|...| .+.++++..|++.+|+++|-.+....++ |..+|.+ |.++|.++++++
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~ 445 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQ 445 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCch
Confidence 666677788888887777765333344333 4678999999999999999887766666 6667655 557889999999
Q ss_pred HHHHHHHHHHHCCCCCChhh-HHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHhch
Q 039177 364 EACGLLEEALNKGLCTQSSM-FDETICGLCQRGLVRKALELLKQMADKDVSPGARVWEALLLSS 426 (453)
Q Consensus 364 ~A~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~ 426 (453)
.|+.++-++... .+... ...+..-|.+++.+--|-+.|+.+. ...|+...|..=-.||
T Consensus 446 lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE--~lDP~pEnWeGKRGAC 504 (557)
T KOG3785|consen 446 LAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELE--ILDPTPENWEGKRGAC 504 (557)
T ss_pred HHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH--ccCCCccccCCccchH
Confidence 999888665322 22222 3344567888899888888898887 4567777775444444
No 108
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=0.00025 Score=68.62 Aligned_cols=48 Identities=4% Similarity=0.072 Sum_probs=32.4
Q ss_pred HHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhccc
Q 039177 90 LAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPK 144 (453)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 144 (453)
|.-.|+.+.|.+-+..+. +..+|..|.+++.+..++|-|.-.+-.|..
T Consensus 738 yvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~ 785 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKN 785 (1416)
T ss_pred EEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhh
Confidence 444666666665555443 334888888888888888888777766654
No 109
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.43 E-value=0.00029 Score=70.94 Aligned_cols=135 Identities=13% Similarity=0.080 Sum_probs=98.3
Q ss_pred ChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 039177 168 DGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMV 247 (453)
Q Consensus 168 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 247 (453)
+...+-.+..+|.+.|+. +++..+++++.+.. +-|+.+.|.+...|... ++++|++++.+....
T Consensus 115 ~k~Al~~LA~~Ydk~g~~--~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~------------ 178 (906)
T PRK14720 115 NKLALRTLAEAYAKLNEN--KKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR------------ 178 (906)
T ss_pred hhHHHHHHHHHHHHcCCh--HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH------------
Confidence 444677788888889988 89999999999887 66788899999999988 999999988877653
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC-------------------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 039177 248 LNGVIVQEDYVKAEELFDELLVL-------------------GLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSK 308 (453)
Q Consensus 248 l~~~~~~g~~~~a~~~~~~m~~~-------------------g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 308 (453)
+...+++..+.++|.++... |..--..++-.+-..|-..++++++..+++.+.+...+
T Consensus 179 ---~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~ 255 (906)
T PRK14720 179 ---FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK 255 (906)
T ss_pred ---HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc
Confidence 33344445555555444432 22233445555667788889999999999999986533
Q ss_pred CCHHHHHHHHHHHH
Q 039177 309 PDVITYNTLLQALC 322 (453)
Q Consensus 309 p~~~~~~~li~~~~ 322 (453)
|.....-++.+|.
T Consensus 256 -n~~a~~~l~~~y~ 268 (906)
T PRK14720 256 -NNKAREELIRFYK 268 (906)
T ss_pred -chhhHHHHHHHHH
Confidence 5567777777776
No 110
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.42 E-value=3.2e-05 Score=71.74 Aligned_cols=198 Identities=13% Similarity=0.065 Sum_probs=152.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 039177 213 IRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNV 292 (453)
Q Consensus 213 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~ 292 (453)
..-+.+.|++.+|.-.|+...++.+. +...|..|......+++-..|+..+.+.++.. +-+....-.|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 34466889999999999999988766 88999999999999999999999999998864 24566777777789999999
Q ss_pred HHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHhcCCHH
Q 039177 293 EAGIKMIACMEELGSK--------PDVITYNTLLQALCKVRELNRLRELVKEMKWK-GIVLNLQTYSIMIDGLASKGDII 363 (453)
Q Consensus 293 ~~a~~~~~~m~~~~~~--------p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~ 363 (453)
..|...++..+....+ ++...-.. ..+.....+....++|-++... +..+|..+...|.-.|--.|+++
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 9999999988764311 00000000 1222223345556666666554 54578888899999999999999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHH
Q 039177 364 EACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADKDVSPGAR 417 (453)
Q Consensus 364 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 417 (453)
+|...|+...... +-|..+||.|-..++...+.++|++.|++.+ .+.|+.+
T Consensus 448 raiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL--qLqP~yV 498 (579)
T KOG1125|consen 448 RAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRAL--QLQPGYV 498 (579)
T ss_pred HHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHH--hcCCCee
Confidence 9999999998764 4466789999999999999999999999998 5677743
No 111
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.42 E-value=0.0021 Score=67.91 Aligned_cols=283 Identities=11% Similarity=-0.003 Sum_probs=172.8
Q ss_pred HHHhcCChhHHHHHHhhcccCC-----------------CCcHHHHHHHHHHHHHC--CC----ccChH--hHHHHHHHH
Q 039177 125 TYADAHRFQDSVNLFYKIPKFR-----------------INRVGFAIEILNCMIND--GF----CVDGK--TCSLILSSV 179 (453)
Q Consensus 125 ~~~~~g~~~~A~~~~~~~~~~~-----------------~~~~~~a~~~~~~m~~~--~~----~p~~~--~~~~ll~~~ 179 (453)
.....|+++.+..+++.++... .++++++..++...... .. .+... ....+-..+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777777777664211 67788888887766542 10 11111 122223344
Q ss_pred HhcCCCChHHHHHHHHHHHHcCCCcC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-CCCHHHHHHHHHH
Q 039177 180 CEQRDLSSDELLGFVQEMKKLGFCFG----MVDYTNVIRSLVKKEKVFDALGILNQMKSD----GI-KPDIVCYTMVLNG 250 (453)
Q Consensus 180 ~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~~~~~~~~~ll~~ 250 (453)
...|++ +.+...+++....--..+ ....+.+...+...|++++|...+++.... |. .....++..+...
T Consensus 463 ~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 463 INDGDP--EEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HhCCCH--HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 567777 889888888765311111 134566677788899999999998888642 11 1112344556667
Q ss_pred HHhcCCHHHHHHHHHHHHH----CCCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC--HHHHHHHHH
Q 039177 251 VIVQEDYVKAEELFDELLV----LGLV--P-DVYTYNVYINGLCKQNNVEAGIKMIACMEELG--SKPD--VITYNTLLQ 319 (453)
Q Consensus 251 ~~~~g~~~~a~~~~~~m~~----~g~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~--~~~~~~li~ 319 (453)
+...|+++.|...+++... .+.. + ....+..+...+...|++++|...+.+..... ..+. ...+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 8889999999998887654 2211 1 12234445556777899999999888765421 1122 234555667
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC--CCcCHH--HH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHH
Q 039177 320 ALCKVRELNRLRELVKEMKWKG--IVLNLQ--TY--SIMIDGLASKGDIIEACGLLEEALNKGLCTQ---SSMFDETICG 390 (453)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~--~~p~~~--~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~ 390 (453)
.+...|++++|...+....... ...... .. ...+..+...|+.+.|..++........... ...+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 7788999999999888875431 111111 00 1122445568899999998876543221111 1113456677
Q ss_pred HHhCCCHHHHHHHHHHHhh
Q 039177 391 LCQRGLVRKALELLKQMAD 409 (453)
Q Consensus 391 ~~~~g~~~~A~~~~~~m~~ 409 (453)
+...|++++|...+++...
T Consensus 701 ~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 701 QILLGQFDEAEIILEELNE 719 (903)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 8899999999999998765
No 112
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.41 E-value=5.2e-05 Score=63.54 Aligned_cols=89 Identities=17% Similarity=0.112 Sum_probs=33.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 039177 282 YINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGD 361 (453)
Q Consensus 282 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 361 (453)
.+....+.|++..|...+.+..... .+|...|+.+.-+|.+.|+.+.|..-|.+..+.... +...++.|...|.-.|+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd 183 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCC
Confidence 3333333444444444433333321 123333343334444444444444443333333222 22233333333333344
Q ss_pred HHHHHHHHHHH
Q 039177 362 IIEACGLLEEA 372 (453)
Q Consensus 362 ~~~A~~~~~~m 372 (453)
.+.|..++...
T Consensus 184 ~~~A~~lll~a 194 (257)
T COG5010 184 LEDAETLLLPA 194 (257)
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.39 E-value=0.00015 Score=60.86 Aligned_cols=165 Identities=14% Similarity=0.068 Sum_probs=136.6
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 039177 205 GMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYIN 284 (453)
Q Consensus 205 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 284 (453)
|..+ ..+-..+...|+-+....+.........+ |.......+....+.|++..|+..+.+..... ++|..+|+.+--
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~-d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPK-DRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcc-cHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 3444 66777888888888888888776554333 66667778899999999999999999988754 689999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH
Q 039177 285 GLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIE 364 (453)
Q Consensus 285 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 364 (453)
+|.+.|+.++|..-|.+..+.-. -+...++.+.-.|.-.|+++.|..++......+.. |...-..+.......|++++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHH
Confidence 99999999999999999988532 25667899999999999999999999999888665 77788888888999999999
Q ss_pred HHHHHHHHHH
Q 039177 365 ACGLLEEALN 374 (453)
Q Consensus 365 A~~~~~~m~~ 374 (453)
|..+...-..
T Consensus 221 A~~i~~~e~~ 230 (257)
T COG5010 221 AEDIAVQELL 230 (257)
T ss_pred HHhhcccccc
Confidence 9998765433
No 114
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.38 E-value=0.00028 Score=70.22 Aligned_cols=162 Identities=10% Similarity=0.070 Sum_probs=125.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 039177 238 KPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPD-VITYNT 316 (453)
Q Consensus 238 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ 316 (453)
..++..+..|.....+.|.+++|+.+++...+.. +-+......+...+.+.+++++|....++..... |+ ......
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~~ 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREILL 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHHH
Confidence 3468888889999999999999999999998853 2345567778888999999999999999998854 54 456777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCC
Q 039177 317 LLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGL 396 (453)
Q Consensus 317 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 396 (453)
+..++.+.|++++|..+|+++...+.. +..++..+..++-..|+.++|...|++..+.. .+....|+..+ ++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VD 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HH
Confidence 778888999999999999999985444 57888899999999999999999999987763 33444555444 34
Q ss_pred HHHHHHHHHHHhhC
Q 039177 397 VRKALELLKQMADK 410 (453)
Q Consensus 397 ~~~A~~~~~~m~~~ 410 (453)
...-..+++++.-.
T Consensus 232 ~~~~~~~~~~~~~~ 245 (694)
T PRK15179 232 LNADLAALRRLGVE 245 (694)
T ss_pred HHHHHHHHHHcCcc
Confidence 45556667776543
No 115
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.36 E-value=0.0014 Score=57.27 Aligned_cols=283 Identities=9% Similarity=-0.006 Sum_probs=176.2
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC----------------CC
Q 039177 85 FVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFR----------------IN 148 (453)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----------------~~ 148 (453)
-+.+.+...|.+.+|+..|.....- -+.+-..+-.-...|...|+-..|+.=++++.+.. .|
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcc
Confidence 3556666667777777777666643 12222222233444555565555555444443322 56
Q ss_pred cHHHHHHHHHHHHHCCCc------------cC--hHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHH
Q 039177 149 RVGFAIEILNCMINDGFC------------VD--GKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIR 214 (453)
Q Consensus 149 ~~~~a~~~~~~m~~~~~~------------p~--~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 214 (453)
.++.|..-|+..+...-. +- .......+..+...|+. ..++.....+.+.. +-|...|..-..
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~--~~ai~~i~~llEi~-~Wda~l~~~Rak 197 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDC--QNAIEMITHLLEIQ-PWDASLRQARAK 197 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCch--hhHHHHHHHHHhcC-cchhHHHHHHHH
Confidence 666666666666553210 00 11223344455566666 78888888887764 557777888888
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH------------
Q 039177 215 SLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVY------------ 282 (453)
Q Consensus 215 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l------------ 282 (453)
+|...|++..|+.-++...+..-. +..++--+-..+...|+.+.++...++.++. .||...+-..
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~le 274 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLE 274 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHH
Confidence 899999999888877776654333 4555556677778889988888888888774 3654432111
Q ss_pred -HHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 039177 283 -INGLCKQNNVEAGIKMIACMEELGSKPDV---ITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLAS 358 (453)
Q Consensus 283 -i~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 358 (453)
+......+++-++.+-.+...+....... ..+..+-.+|...+++.+|++.-.+++..... |+.++.--..+|.-
T Consensus 275 s~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~~l~dRAeA~l~ 353 (504)
T KOG0624|consen 275 SAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQVLCDRAEAYLG 353 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHHHHHHHHHHHhh
Confidence 11233455666666666666654422112 23455666777788899999888888876433 57777777788888
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 039177 359 KGDIIEACGLLEEALNKG 376 (453)
Q Consensus 359 ~g~~~~A~~~~~~m~~~~ 376 (453)
...+|+|+.=|+...+.+
T Consensus 354 dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 354 DEMYDDAIHDYEKALELN 371 (504)
T ss_pred hHHHHHHHHHHHHHHhcC
Confidence 888888888888887654
No 116
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.36 E-value=0.00042 Score=68.97 Aligned_cols=164 Identities=11% Similarity=0.007 Sum_probs=128.4
Q ss_pred CCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 039177 202 FCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNV 281 (453)
Q Consensus 202 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 281 (453)
.+.+...+-.|.....+.|.+++|..+++...+..+. +......+...+.+.+++++|+..+++..... +-+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 3456788889999999999999999999999987444 56677788899999999999999999998865 234556677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 039177 282 YINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGD 361 (453)
Q Consensus 282 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 361 (453)
+..++.+.|++++|..+|+++...+. -+..++..+..++-..|+.++|...|+...+.. .+...-|+.++ ++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VD 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HH
Confidence 77788999999999999999998432 246789999999999999999999999998762 22445555443 34
Q ss_pred HHHHHHHHHHHHHC
Q 039177 362 IIEACGLLEEALNK 375 (453)
Q Consensus 362 ~~~A~~~~~~m~~~ 375 (453)
+..-..+++.+.-.
T Consensus 232 ~~~~~~~~~~~~~~ 245 (694)
T PRK15179 232 LNADLAALRRLGVE 245 (694)
T ss_pred HHHHHHHHHHcCcc
Confidence 55556666666443
No 117
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.32 E-value=0.0001 Score=58.29 Aligned_cols=91 Identities=7% Similarity=-0.097 Sum_probs=37.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 039177 212 VIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNN 291 (453)
Q Consensus 212 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 291 (453)
+...+...|++++|...|+......+. +...|..+..++...|++++|...|+...... +.+...+..+..++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 333444444444444444444433222 33344444444444444444444444444322 1233333334444444444
Q ss_pred HHHHHHHHHHHHH
Q 039177 292 VEAGIKMIACMEE 304 (453)
Q Consensus 292 ~~~a~~~~~~m~~ 304 (453)
.++|...|+...+
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 118
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.31 E-value=1.3e-06 Score=50.06 Aligned_cols=33 Identities=39% Similarity=0.798 Sum_probs=25.1
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCC
Q 039177 383 MFDETICGLCQRGLVRKALELLKQMADKDVSPG 415 (453)
Q Consensus 383 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 415 (453)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
No 119
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.0016 Score=54.98 Aligned_cols=250 Identities=16% Similarity=0.060 Sum_probs=156.3
Q ss_pred ChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhH-HHHHHHHHHhCCCCCCHHHHHH
Q 039177 168 DGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFD-ALGILNQMKSDGIKPDIVCYTM 246 (453)
Q Consensus 168 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~~~~~~~~~~~~ 246 (453)
+...-..+-++|...|.. .. +..++.... .+.......+......-++.++ .-++.+.+......-+......
T Consensus 40 ~~e~d~y~~raylAlg~~--~~---~~~eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~ 113 (299)
T KOG3081|consen 40 DVELDVYMYRAYLALGQY--QI---VISEIKEGK-ATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLL 113 (299)
T ss_pred hhHHHHHHHHHHHHcccc--cc---ccccccccc-CChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHH
Confidence 344444555666666665 22 222333222 2222222222222222333333 3345555555544434444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---
Q 039177 247 VLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCK--- 323 (453)
Q Consensus 247 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~--- 323 (453)
-...|++.|++++|++...... +......=+..+.+..+.+.|.+.++.|.+. -+..|.+.|.++|.+
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhc
Confidence 5567889999999998887621 2333333344567888899999999999983 366788888887765
Q ss_pred -cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCH-HHHH
Q 039177 324 -VRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLV-RKAL 401 (453)
Q Consensus 324 -~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~ 401 (453)
.+.+.+|.-+|++|-++ ..|+..+.+-...++...|++++|..++++...+... +..+...+|..-...|.. +-..
T Consensus 185 ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred cchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHH
Confidence 45689999999999875 5678889999999999999999999999999988643 455555555555555554 4455
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHhchhcchhhHHHHHHHHHHhh
Q 039177 402 ELLKQMADKDVSPGARVWEALLLSSVSKLDFVNTSFIRLVDQI 444 (453)
Q Consensus 402 ~~~~~m~~~~~~p~~~~~~~ll~a~~~~~~~~~~~~~~~~~~~ 444 (453)
+.+.+++. ..|++. ++.+.+..+.-|++...+.
T Consensus 263 r~l~QLk~--~~p~h~--------~vk~~~ekeaeFDrl~~qy 295 (299)
T KOG3081|consen 263 RNLSQLKL--SHPEHP--------FVKHLNEKEAEFDRLVLQY 295 (299)
T ss_pred HHHHHHHh--cCCcch--------HHHHHHHHHHHHHHHHHHh
Confidence 66677663 244432 3345555555566665554
No 120
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.28 E-value=0.00058 Score=62.51 Aligned_cols=182 Identities=15% Similarity=0.119 Sum_probs=128.2
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 039177 204 FGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYI 283 (453)
Q Consensus 204 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 283 (453)
|+...+...+........-..+-.++.+..+ ..-...-|..- -.+...|++++|+..+..++..- +-|...+....
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~aa~YG~A-~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~ 347 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSK--RGGLAAQYGRA-LQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAG 347 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhC--ccchHHHHHHH-HHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3444455555544444333333333333222 11123334333 34557799999999999987753 34566667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH
Q 039177 284 NGLCKQNNVEAGIKMIACMEELGSKPD-VITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDI 362 (453)
Q Consensus 284 ~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 362 (453)
..+.+.++.++|.+.++.+... .|+ ....-.+.++|.+.|++.+|..+++........ |...|..|.++|...|+.
T Consensus 348 ~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 348 DILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCch
Confidence 8899999999999999999884 466 456677788999999999999999998888666 888999999999999998
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhC
Q 039177 363 IEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADK 410 (453)
Q Consensus 363 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 410 (453)
.+|.... ..+|...|+++.|+..+....+.
T Consensus 425 ~~a~~A~------------------AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 425 AEALLAR------------------AEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHH------------------HHHHHhCCCHHHHHHHHHHHHHh
Confidence 8776654 34556678888888888887764
No 121
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=0.0016 Score=54.46 Aligned_cols=186 Identities=11% Similarity=0.018 Sum_probs=107.0
Q ss_pred CcHHHHHHHHHHHHH---CC-CccChH-hHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCCh
Q 039177 148 NRVGFAIEILNCMIN---DG-FCVDGK-TCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKV 222 (453)
Q Consensus 148 ~~~~~a~~~~~~m~~---~~-~~p~~~-~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 222 (453)
.+.++.++++..+.. .| ..++.+ .|..++-+....++. +.|...++++...- +-+..+-..-.-.+-..|++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~--~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRD--DLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 344445555444443 23 445554 344555555666666 67777777765543 22332222222233445777
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 039177 223 FDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACM 302 (453)
Q Consensus 223 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 302 (453)
++|+++++.+.+.++. |.+++--=+...-..|+.-+|++-+....+. +..|...|.-+-..|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 7777777777776533 5555655555555566666666666666553 4467777777777777777777777777777
Q ss_pred HHCCCCCCHH-HHHHHHHHHHh---cCCHHHHHHHHHHHHHC
Q 039177 303 EELGSKPDVI-TYNTLLQALCK---VRELNRLRELVKEMKWK 340 (453)
Q Consensus 303 ~~~~~~p~~~-~~~~li~~~~~---~~~~~~a~~~~~~~~~~ 340 (453)
.-. .|... .+-.+...+.- ..++..+.++|...++.
T Consensus 181 ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 663 34333 33344443332 33455667777776665
No 122
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.28 E-value=0.0023 Score=55.98 Aligned_cols=286 Identities=10% Similarity=0.017 Sum_probs=186.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHhhcccCC----------------CCcHHHHHHHHHHHHHCCCccChHhH-HHHHH
Q 039177 115 PEFIFIDLIKTYADAHRFQDSVNLFYKIPKFR----------------INRVGFAIEILNCMINDGFCVDGKTC-SLILS 177 (453)
Q Consensus 115 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----------------~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~ 177 (453)
++.-.-.+...+...|++.+|+.-|....+.+ .|+.+.|+.-+.+.++ .+||-..- ..-..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhch
Confidence 33444455566666777777777777665544 3444555555555544 34553211 11223
Q ss_pred HHHhcCCCChHHHHHHHHHHHHcCCCc--Ch----------hh--HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 039177 178 SVCEQRDLSSDELLGFVQEMKKLGFCF--GM----------VD--YTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVC 243 (453)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~g~~~--~~----------~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 243 (453)
.+.+.|.+ +.|..=|+.+......- .. .. ....+..+.-.|+...|++....+.+..+- |...
T Consensus 115 vllK~Gel--e~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l 191 (504)
T KOG0624|consen 115 VLLKQGEL--EQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-DASL 191 (504)
T ss_pred hhhhcccH--HHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-hhHH
Confidence 45678888 88888888887764211 11 11 223455666778999999999888876433 7778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH----HHH--
Q 039177 244 YTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITY----NTL-- 317 (453)
Q Consensus 244 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~----~~l-- 317 (453)
|..-..+|...|++..|+.=++..-+.. ..++.++--+-..+...|+.+.++...++..+. .||...+ -.|
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHH
Confidence 8888889999999999887777765543 345556666677788899999999988888884 4665422 111
Q ss_pred -------HHHHHhcCCHHHHHHHHHHHHHCCCCcCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 039177 318 -------LQALCKVRELNRLRELVKEMKWKGIVLNLQ---TYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDET 387 (453)
Q Consensus 318 -------i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 387 (453)
+......++|.++..-.+...+....-... .+..+-.+|...|++.+|++...+..+.. +.|..++---
T Consensus 269 v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dR 347 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDR 347 (504)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHH
Confidence 223345677777777777777764432222 34455667778899999999999887643 2335566666
Q ss_pred HHHHHhCCCHHHHHHHHHHHhh
Q 039177 388 ICGLCQRGLVRKALELLKQMAD 409 (453)
Q Consensus 388 i~~~~~~g~~~~A~~~~~~m~~ 409 (453)
..+|.--..++.|+.=|+...+
T Consensus 348 AeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 348 AEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHHHh
Confidence 6777777778888887777764
No 123
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=0.0035 Score=58.12 Aligned_cols=107 Identities=13% Similarity=-0.023 Sum_probs=79.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCH
Q 039177 318 LQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLV 397 (453)
Q Consensus 318 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 397 (453)
.+.+.+.|++..|...|.++++..+. |...|..-.-+|.+.|.+..|+.=.+...+.+ +++...|..=..++.-..++
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~y 442 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEY 442 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHH
Confidence 55667889999999999999998766 88899999999999999999998888877764 33444444444455555678
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHhchhc
Q 039177 398 RKALELLKQMADKDVSPGARVWEALLLSSVS 428 (453)
Q Consensus 398 ~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~ 428 (453)
++|.+.|.+..+. .|+..-+..-+.-|..
T Consensus 443 dkAleay~eale~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 443 DKALEAYQEALEL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHhc--CchhHHHHHHHHHHHH
Confidence 8888888887744 4666666555555543
No 124
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.24 E-value=5.7e-05 Score=59.16 Aligned_cols=104 Identities=12% Similarity=-0.009 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 039177 313 TYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLC 392 (453)
Q Consensus 313 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 392 (453)
....+...+.+.|++++|...|+.+...+.. +...+..+...|.+.|++++|...++...+.+ ..+...+..+...|.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 3444555555666666666666666555433 55556666666666666666666666655543 233444555555666
Q ss_pred hCCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 039177 393 QRGLVRKALELLKQMADKDVSPGARVWE 420 (453)
Q Consensus 393 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 420 (453)
..|++++|...|+...+ +.|+...+.
T Consensus 97 ~~g~~~~A~~~~~~al~--~~p~~~~~~ 122 (135)
T TIGR02552 97 ALGEPESALKALDLAIE--ICGENPEYS 122 (135)
T ss_pred HcCCHHHHHHHHHHHHH--hccccchHH
Confidence 66666666666666553 234444433
No 125
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.24 E-value=2e-06 Score=49.29 Aligned_cols=33 Identities=36% Similarity=0.654 Sum_probs=18.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 039177 208 DYTNVIRSLVKKEKVFDALGILNQMKSDGIKPD 240 (453)
Q Consensus 208 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 240 (453)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
No 126
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.0035 Score=62.49 Aligned_cols=276 Identities=13% Similarity=0.162 Sum_probs=136.3
Q ss_pred HHHHHHHHcCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCccChHhHHHHHHH
Q 039177 101 SVLDHIEKRENF--ETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCVDGKTCSLILSS 178 (453)
Q Consensus 101 ~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 178 (453)
+++++..+. ++ ..|+.-....+.++...+-+.+-+++++++.-.+ +-+.-+...-+.|+-.
T Consensus 968 qLiDqVv~t-al~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~----------------S~Fse~~nLQnLLiLt 1030 (1666)
T KOG0985|consen 968 QLIDQVVQT-ALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDN----------------SVFSENRNLQNLLILT 1030 (1666)
T ss_pred HHHHHHHHh-cCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCC----------------cccccchhhhhhHHHH
Confidence 344444443 22 2345566677788888888888888887754211 1111222233334433
Q ss_pred HHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC---------------------C
Q 039177 179 VCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDG---------------------I 237 (453)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---------------------~ 237 (453)
..+... ..+++..+++.... .|+ +...+...+-+++|..+|+..-..+ -
T Consensus 1031 Aikad~---trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~ 1100 (1666)
T KOG0985|consen 1031 AIKADR---TRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAER 1100 (1666)
T ss_pred HhhcCh---HHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHh
Confidence 333332 35555555544332 122 2233444455555555555442100 0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 039177 238 KPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTL 317 (453)
Q Consensus 238 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 317 (453)
.-....|+.+..+-.+.|...+|++-|-+. .|+..|.-++....+.|.+++-.+.+.-..+..-.|.. =+.|
T Consensus 1101 ~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eL 1172 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSEL 1172 (1666)
T ss_pred hCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHH
Confidence 002234444444444444444444333211 23444555555555555555555444444443323322 2344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCH
Q 039177 318 LQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLV 397 (453)
Q Consensus 318 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 397 (453)
|-+|++.+++.+.++++ ..||......+.+-|...|.++.|.-++.. ..-|..|...+...|.+
T Consensus 1173 i~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~Lgey 1236 (1666)
T KOG0985|consen 1173 IFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEY 1236 (1666)
T ss_pred HHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHH
Confidence 44555555544433332 123444444444445555555554444432 33466777788888888
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHhchhcchhhH
Q 039177 398 RKALELLKQMADKDVSPGARVWEALLLSSVSKLDFV 433 (453)
Q Consensus 398 ~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~~~~~ 433 (453)
..|...-++. -+..||..+=.||....++-
T Consensus 1237 Q~AVD~aRKA------ns~ktWK~VcfaCvd~~EFr 1266 (1666)
T KOG0985|consen 1237 QGAVDAARKA------NSTKTWKEVCFACVDKEEFR 1266 (1666)
T ss_pred HHHHHHhhhc------cchhHHHHHHHHHhchhhhh
Confidence 8887766654 36678888888887665543
No 127
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.22 E-value=0.0047 Score=57.40 Aligned_cols=365 Identities=10% Similarity=0.089 Sum_probs=204.0
Q ss_pred CCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC---------
Q 039177 76 CEPPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFR--------- 146 (453)
Q Consensus 76 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------- 146 (453)
-+-|..+|..+|+-+... .++++.+.++++... ++.....|..-|..-.+..+++....+|.+....-
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lY 92 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLY 92 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 456888999999987766 999999999999975 56677899999999999999999999998865432
Q ss_pred -----------CCcHHHHHHHHHHH-HHCCCccCh-HhHHHHHHHHH---hcCCCCh----HHHHHHHHHHHHcCCCc--
Q 039177 147 -----------INRVGFAIEILNCM-INDGFCVDG-KTCSLILSSVC---EQRDLSS----DELLGFVQEMKKLGFCF-- 204 (453)
Q Consensus 147 -----------~~~~~~a~~~~~~m-~~~~~~p~~-~~~~~ll~~~~---~~~~~~~----~~a~~~~~~~~~~g~~~-- 204 (453)
.+.-+...+.|+-. .+.|+.+-. ..|+..+..+- ..|.+.. +...++++.+...-+.-
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 11111122222222 223443322 23444444322 1222210 44455555544321100
Q ss_pred ----ChhhHHHHHHHHH-------hcCChhHHHHHHHHHHh--CCCCCCHHH---------------HHHHHHHHH----
Q 039177 205 ----GMVDYTNVIRSLV-------KKEKVFDALGILNQMKS--DGIKPDIVC---------------YTMVLNGVI---- 252 (453)
Q Consensus 205 ----~~~~~~~li~~~~-------~~g~~~~a~~~~~~m~~--~~~~~~~~~---------------~~~ll~~~~---- 252 (453)
|-..|..=|+... +...+..|.++++++.. .|......+ |-.+|.-=-
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 0111111111111 12334556666655542 232211111 322221100
Q ss_pred ---------------------------------------------hcCC-------HHHHHHHHHHHHHCCCCCChhhHH
Q 039177 253 ---------------------------------------------VQED-------YVKAEELFDELLVLGLVPDVYTYN 280 (453)
Q Consensus 253 ---------------------------------------------~~g~-------~~~a~~~~~~m~~~g~~~~~~~~~ 280 (453)
..|+ -+++..+++.....-...+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111 122222222222211111122222
Q ss_pred HHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHH
Q 039177 281 VYINGLCKQ---NNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVL-NLQTYSIMIDGL 356 (453)
Q Consensus 281 ~li~~~~~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~ 356 (453)
.+...--.. +..+....++..+...-..--.-+|..+++.-.+...++.|..+|....+.+..+ ++..+++++.-|
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 211110001 1233444444444432211122367788888888999999999999999987776 788899999988
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHhc--hhcchhh
Q 039177 357 ASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADKDVSPG--ARVWEALLLS--SVSKLDF 432 (453)
Q Consensus 357 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~a--~~~~~~~ 432 (453)
|. ++..-|.++|+--.++ ..-+...-...+.-+...|+-..|..+|++....++.|+ ...|..+|.- +.+....
T Consensus 413 cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 413 CS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred hc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 75 7889999999876654 223344456667788889999999999999998877665 4788888763 3444444
Q ss_pred HHHHHHHHHHhhh
Q 039177 433 VNTSFIRLVDQIL 445 (453)
Q Consensus 433 ~~~~~~~~~~~~~ 445 (453)
..+.-.+++..+.
T Consensus 491 i~~lekR~~~af~ 503 (656)
T KOG1914|consen 491 ILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHHHhcc
Confidence 4444555555555
No 128
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.21 E-value=0.00012 Score=67.32 Aligned_cols=121 Identities=16% Similarity=0.121 Sum_probs=61.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 039177 246 MVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVR 325 (453)
Q Consensus 246 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 325 (453)
.|+..+...++++.|..+|+++.+.. |+ ....++..+...++-.+|.+++.+..+.. +-|...+..-...|.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 34444445555555666665555532 32 22334445555555555555555555432 123444444455555555
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039177 326 ELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEA 372 (453)
Q Consensus 326 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 372 (453)
+++.|+.+.+++.+..+. +-.+|..|..+|.+.|+++.|+..++.+
T Consensus 249 ~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 555555555555554322 3345555555666666666555555544
No 129
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.21 E-value=2.8e-06 Score=48.34 Aligned_cols=32 Identities=22% Similarity=0.440 Sum_probs=18.5
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCC
Q 039177 383 MFDETICGLCQRGLVRKALELLKQMADKDVSP 414 (453)
Q Consensus 383 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 414 (453)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555554
No 130
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.0061 Score=57.27 Aligned_cols=162 Identities=14% Similarity=0.082 Sum_probs=109.2
Q ss_pred HHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHH
Q 039177 243 CYTMVLNGVIVQ--EDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIA--------CMEELGSKPDVI 312 (453)
Q Consensus 243 ~~~~ll~~~~~~--g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~--------~m~~~~~~p~~~ 312 (453)
.+.+++..+.+. .....+..++...-+....-.....-+++......|+++.|.+++. .+.+.+..| .
T Consensus 341 ~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~ 418 (652)
T KOG2376|consen 341 LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--G 418 (652)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--h
Confidence 444444444322 2456667776666554322224455566777888999999999999 566655444 4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCcCHHH----HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 039177 313 TYNTLLQALCKVRELNRLRELVKEMKWK--GIVLNLQT----YSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDE 386 (453)
Q Consensus 313 ~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 386 (453)
+...++..+.+.++-+.|..++.+..+. .-.+.... +.-+..--.+.|+.++|..+++++.+.+ .++..+...
T Consensus 419 ~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~ 497 (652)
T KOG2376|consen 419 TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQ 497 (652)
T ss_pred HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHH
Confidence 5567777888888888888888777653 11112222 3333334456799999999999999865 678889999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHh
Q 039177 387 TICGLCQRGLVRKALELLKQMA 408 (453)
Q Consensus 387 li~~~~~~g~~~~A~~~~~~m~ 408 (453)
++.+|++. +++.|..+-..+.
T Consensus 498 lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 498 LVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred HHHHHHhc-CHHHHHHHhhcCC
Confidence 99999886 6788887766653
No 131
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.17 E-value=0.00014 Score=56.97 Aligned_cols=95 Identities=13% Similarity=0.097 Sum_probs=48.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 039177 208 DYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLC 287 (453)
Q Consensus 208 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 287 (453)
....+...+...|++++|.+.|+.+...+.. +...|..+...+...|++++|..+++...+.+ +.+...+..+...|.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 3444445555555555555555555544322 44455555555555555555555555554433 223344444444555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 039177 288 KQNNVEAGIKMIACMEE 304 (453)
Q Consensus 288 ~~~~~~~a~~~~~~m~~ 304 (453)
..|+.++|...|+...+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 97 ALGEPESALKALDLAIE 113 (135)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555554
No 132
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.15 E-value=4.1e-05 Score=70.60 Aligned_cols=125 Identities=12% Similarity=0.084 Sum_probs=103.1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 039177 235 DGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVL--GLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVI 312 (453)
Q Consensus 235 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 312 (453)
.+.+.+......+++.+....+.+.+..++-.+... ....-..|..++|+.|.+.|..+.++.++..=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 344557778888888888888889999988888764 222334566799999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 039177 313 TYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASK 359 (453)
Q Consensus 313 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 359 (453)
++|.||+.+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999888887766777777777776665
No 133
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.15 E-value=0.0079 Score=57.16 Aligned_cols=305 Identities=14% Similarity=0.056 Sum_probs=196.9
Q ss_pred HHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCccC
Q 039177 89 TLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCVD 168 (453)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 168 (453)
-|...+.+...+...+.+.+. ++....+.....-.+...|+-++|...... -.. +-.-+
T Consensus 16 k~yE~kQYkkgLK~~~~iL~k--~~eHgeslAmkGL~L~~lg~~~ea~~~vr~------------------glr-~d~~S 74 (700)
T KOG1156|consen 16 KCYETKQYKKGLKLIKQILKK--FPEHGESLAMKGLTLNCLGKKEEAYELVRL------------------GLR-NDLKS 74 (700)
T ss_pred HHHHHHHHHhHHHHHHHHHHh--CCccchhHHhccchhhcccchHHHHHHHHH------------------Hhc-cCccc
Confidence 345567788888888888874 344444554444445566777777765543 222 11235
Q ss_pred hHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 039177 169 GKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVL 248 (453)
Q Consensus 169 ~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll 248 (453)
.++|..+.-.+....+. ++|.+.|....+.+ +-|...|.-+--.-++.|+++........+.+..+. ....|..+.
T Consensus 75 ~vCwHv~gl~~R~dK~Y--~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~A 150 (700)
T KOG1156|consen 75 HVCWHVLGLLQRSDKKY--DEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFA 150 (700)
T ss_pred chhHHHHHHHHhhhhhH--HHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHH
Confidence 56777777666666777 99999999998876 556777888877788889999998888888876433 566788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCC-CCChhhHHHHHH------HHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHH
Q 039177 249 NGVIVQEDYVKAEELFDELLVLGL-VPDVYTYNVYIN------GLCKQNNVEAGIKMIACMEELGSKPDVI-TYNTLLQA 320 (453)
Q Consensus 249 ~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~------~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~ 320 (453)
.++.-.|+...|..++++..+... .|+...+.-... ...+.|..++|.+.+..-... + .|.. .-..-...
T Consensus 151 vs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~e~ka~l 228 (700)
T KOG1156|consen 151 VAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFEETKADL 228 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHhhhHHHH
Confidence 888899999999999999877542 455555543322 345677778887776655432 1 2332 33445667
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHC---CCCCChhhHHHHHHHHHhCCC
Q 039177 321 LCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEAC-GLLEEALNK---GLCTQSSMFDETICGLCQRGL 396 (453)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~ 396 (453)
+.+.+++++|..++..++...+. +...|..+..++.+--+.-++. .+|....+. ...|-... +.......-
T Consensus 229 ~~kl~~lEeA~~~y~~Ll~rnPd-n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlp----lsvl~~eel 303 (700)
T KOG1156|consen 229 LMKLGQLEEAVKVYRRLLERNPD-NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLP----LSVLNGEEL 303 (700)
T ss_pred HHHHhhHHhHHHHHHHHHhhCch-hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhcc----HHHhCcchh
Confidence 88999999999999999998443 4444455555554333333344 666666543 11121111 111111223
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHhc
Q 039177 397 VRKALELLKQMADKDVSPGARVWEALLLS 425 (453)
Q Consensus 397 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~a 425 (453)
.+..-.++..+..+|+.+-...+.+|..-
T Consensus 304 ~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~ 332 (700)
T KOG1156|consen 304 KEIVDKYLRPLLSKGVPSVFKDLRSLYKD 332 (700)
T ss_pred HHHHHHHHHHHhhcCCCchhhhhHHHHhc
Confidence 44555677788888988766666666543
No 134
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.14 E-value=4.3e-06 Score=47.54 Aligned_cols=32 Identities=31% Similarity=0.585 Sum_probs=14.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 039177 208 DYTNVIRSLVKKEKVFDALGILNQMKSDGIKP 239 (453)
Q Consensus 208 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 239 (453)
+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 34444444444444444444444444444443
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.11 E-value=0.0028 Score=58.18 Aligned_cols=147 Identities=15% Similarity=0.071 Sum_probs=120.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHH
Q 039177 207 VDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPD-VYTYNVYING 285 (453)
Q Consensus 207 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~ 285 (453)
..+.-....+...|++++|+..++.+...-+. |...+......+.+.++.++|.+.++.+... .|+ ...+-.+..+
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~a 383 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHH
Confidence 33444455566789999999999999876433 7777788888999999999999999999885 355 5666778889
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 039177 286 LCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEA 365 (453)
Q Consensus 286 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 365 (453)
+.+.|++.+|+.++....... +-|...|..|.++|...|+..++..-..+ +|...|+++.|
T Consensus 384 ll~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A 444 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQA 444 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHH
Confidence 999999999999999988764 34788999999999999998888766544 44567999999
Q ss_pred HHHHHHHHHC
Q 039177 366 CGLLEEALNK 375 (453)
Q Consensus 366 ~~~~~~m~~~ 375 (453)
...+....+.
T Consensus 445 ~~~l~~A~~~ 454 (484)
T COG4783 445 IIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHh
Confidence 9999888776
No 136
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.11 E-value=0.0026 Score=62.00 Aligned_cols=150 Identities=11% Similarity=0.015 Sum_probs=87.2
Q ss_pred ChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCC--------CCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC----
Q 039177 79 PPEAYHFVIKTLAENSQFCDISSVLDHIEKRENF--------ETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFR---- 146 (453)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---- 146 (453)
+...|..+.+.|.+.++++-|.-.+.+|....|. .++ ..-....-.....|.+++|..+|.+....+
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~DLlNK 834 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYDLLNK 834 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 5567999999999999999988777777643321 111 222233344567788899998888876655
Q ss_pred ----CCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHH----------HHcCC---------C
Q 039177 147 ----INRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEM----------KKLGF---------C 203 (453)
Q Consensus 147 ----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~----------~~~g~---------~ 203 (453)
.|.+++|+++-+.--+..++ .||.....-+-..+++ +.|++.|+.. ..... .
T Consensus 835 lyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di--~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~ 909 (1416)
T KOG3617|consen 835 LYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDI--EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRK 909 (1416)
T ss_pred HHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccH--HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhc
Confidence 78888888876543322222 2444444444455555 6666655432 11110 0
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039177 204 FGMVDYTNVIRSLVKKEKVFDALGILNQMKS 234 (453)
Q Consensus 204 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 234 (453)
.|...|.-.....-..|+.+.|+.+|....+
T Consensus 910 ~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 910 RDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred cchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 1222333333333445777777777766553
No 137
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.09 E-value=7.9e-05 Score=68.78 Aligned_cols=124 Identities=14% Similarity=0.124 Sum_probs=107.7
Q ss_pred CCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 039177 201 GFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSD--GIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYT 278 (453)
Q Consensus 201 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 278 (453)
+.+.+......+++.+....+++.+..++.+.+.. ....-..|..++++.|.+.|..+.++.++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44667777888888888889999999999999875 3333345667999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 039177 279 YNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKV 324 (453)
Q Consensus 279 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 324 (453)
+|.+|+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999998877777888888888888776
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.05 E-value=0.00031 Score=64.65 Aligned_cols=125 Identities=14% Similarity=0.216 Sum_probs=103.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 039177 209 YTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCK 288 (453)
Q Consensus 209 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 288 (453)
...|+..+...++++.|+++|+++.+.. |+ ....++..+...++-.+|.+++.+.++.. +.+......-...+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 4566677777899999999999999874 44 44568888888899999999999988653 3456666666777899
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 289 QNNVEAGIKMIACMEELGSKPDVI-TYNTLLQALCKVRELNRLRELVKEMKWK 340 (453)
Q Consensus 289 ~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~ 340 (453)
.++.+.|..+.+++.+. .|+.. +|..|..+|.+.|+++.|+..++.+...
T Consensus 247 k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 247 KKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred cCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 99999999999999984 57665 9999999999999999999999988765
No 139
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.02 E-value=0.017 Score=56.16 Aligned_cols=307 Identities=15% Similarity=0.072 Sum_probs=194.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC----------------CCcHHHHHHHHHHHHHCCCcc-ChHhHH
Q 039177 111 NFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFR----------------INRVGFAIEILNCMINDGFCV-DGKTCS 173 (453)
Q Consensus 111 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----------------~~~~~~a~~~~~~m~~~~~~p-~~~~~~ 173 (453)
.+.-+..+|..|.-+...+|+++.+.+.|++..... .|....|+.+++.-....-.| |...+.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 356688999999999999999999999999865533 456666777776655432224 333444
Q ss_pred HHHHHHHhc-CCCChHHHHHHHHHHHHc--CC--CcChhhHHHHHHHHHhc-----------CChhHHHHHHHHHHhCCC
Q 039177 174 LILSSVCEQ-RDLSSDELLGFVQEMKKL--GF--CFGMVDYTNVIRSLVKK-----------EKVFDALGILNQMKSDGI 237 (453)
Q Consensus 174 ~ll~~~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~~~ 237 (453)
..-+.|.+. +.. ++++++-.+.... +. ......|..+.-+|... ....++++.+++..+.+.
T Consensus 398 masklc~e~l~~~--eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 398 MASKLCIERLKLV--EEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHhchhhh--hhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 444444433 333 6666665555552 11 12334455555555532 224578888888877644
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC--------
Q 039177 238 -KPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEEL-GS-------- 307 (453)
Q Consensus 238 -~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~-------- 307 (453)
.|++..|-+ --|+..++++.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+..... |.
T Consensus 476 ~dp~~if~la--lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~ 553 (799)
T KOG4162|consen 476 TDPLVIFYLA--LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK 553 (799)
T ss_pred CCchHHHHHH--HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence 344444433 346677899999999999999866788999999999999999999999998776542 21
Q ss_pred ----------CCCHHHHHHHHHHHHh---------c--------------CCHHHHHHHHHHH----H----HCC-----
Q 039177 308 ----------KPDVITYNTLLQALCK---------V--------------RELNRLRELVKEM----K----WKG----- 341 (453)
Q Consensus 308 ----------~p~~~~~~~li~~~~~---------~--------------~~~~~a~~~~~~~----~----~~~----- 341 (453)
.--..|+..++..+-. . ++..++......+ . ..|
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence 0012233333333320 0 0111111111111 0 001
Q ss_pred ------CCcC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 039177 342 ------IVLN------LQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMAD 409 (453)
Q Consensus 342 ------~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (453)
..|+ ...|......+.+.+..++|...+.+..... ......|......+...|..++|.+.|....
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al- 711 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL- 711 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH-
Confidence 1123 3466777888999999999998888886653 3455567766677888999999999999887
Q ss_pred CCCCCCHHHHHHHHh
Q 039177 410 KDVSPGARVWEALLL 424 (453)
Q Consensus 410 ~~~~p~~~~~~~ll~ 424 (453)
-+.|+..--..-+.
T Consensus 712 -~ldP~hv~s~~Ala 725 (799)
T KOG4162|consen 712 -ALDPDHVPSMTALA 725 (799)
T ss_pred -hcCCCCcHHHHHHH
Confidence 56777555444333
No 140
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.013 Score=54.44 Aligned_cols=309 Identities=14% Similarity=0.135 Sum_probs=185.0
Q ss_pred HHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC----------------CCcHH
Q 039177 88 KTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFR----------------INRVG 151 (453)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----------------~~~~~ 151 (453)
++....|+++.|..+|-....-. ++|...|..-..+|++.|++++|++=-.+-.+.+ .|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHH
Confidence 45667889999999998888764 6688888888999999999888765433322222 67788
Q ss_pred HHHHHHHHHHHCCCcc-ChHhHHHHHHHHHhcCCCChHHHHHHH------HHHHHc---CCCcChhhHHHHHHHHHhc--
Q 039177 152 FAIEILNCMINDGFCV-DGKTCSLILSSVCEQRDLSSDELLGFV------QEMKKL---GFCFGMVDYTNVIRSLVKK-- 219 (453)
Q Consensus 152 ~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~------~~~~~~---g~~~~~~~~~~li~~~~~~-- 219 (453)
+|+.-|..=++. .| |...++-+..++... ..+.+.| ..+... ........|..++..+-+.
T Consensus 88 eA~~ay~~GL~~--d~~n~~L~~gl~~a~~~~-----~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~ 160 (539)
T KOG0548|consen 88 EAILAYSEGLEK--DPSNKQLKTGLAQAYLED-----YAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPT 160 (539)
T ss_pred HHHHHHHHHhhc--CCchHHHHHhHHHhhhHH-----HHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcH
Confidence 887777765553 34 344555566555111 0111111 000000 0000011122222222111
Q ss_pred --------CChhHHHHHHHHH-----HhCC-------CCC----------------------CHHHHHHHHHHHHhcCCH
Q 039177 220 --------EKVFDALGILNQM-----KSDG-------IKP----------------------DIVCYTMVLNGVIVQEDY 257 (453)
Q Consensus 220 --------g~~~~a~~~~~~m-----~~~~-------~~~----------------------~~~~~~~ll~~~~~~g~~ 257 (453)
..+..+..++... ...+ ..| -..-...+.++..+..++
T Consensus 161 ~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f 240 (539)
T KOG0548|consen 161 SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDF 240 (539)
T ss_pred hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhH
Confidence 1111111111100 0000 111 111344567777788888
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHhcCCHHHH
Q 039177 258 VKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYN-------TLLQALCKVRELNRL 330 (453)
Q Consensus 258 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-------~li~~~~~~~~~~~a 330 (453)
..|++.+....+.. -+..-++..-.+|...|.+.+....-....+.|-. ...-|+ .+..+|.+.++++.+
T Consensus 241 ~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~a 317 (539)
T KOG0548|consen 241 ETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGA 317 (539)
T ss_pred HHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHH
Confidence 99999998887754 45556677777788888888877776666655422 111222 234466677888899
Q ss_pred HHHHHHHHHCCCCcCHHHHH-------------------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 039177 331 RELVKEMKWKGIVLNLQTYS-------------------------IMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFD 385 (453)
Q Consensus 331 ~~~~~~~~~~~~~p~~~~~~-------------------------~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 385 (453)
...|...+.....|+...-. .=...+.+.|++..|+..+.+++..+ +-|...|.
T Consensus 318 i~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYs 396 (539)
T KOG0548|consen 318 IKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYS 396 (539)
T ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHH
Confidence 99888877665554432211 11334678899999999999999886 56777899
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhh
Q 039177 386 ETICGLCQRGLVRKALELLKQMAD 409 (453)
Q Consensus 386 ~li~~~~~~g~~~~A~~~~~~m~~ 409 (453)
.-..+|.+.|.+..|+.=.+...+
T Consensus 397 NRAac~~kL~~~~~aL~Da~~~ie 420 (539)
T KOG0548|consen 397 NRAACYLKLGEYPEALKDAKKCIE 420 (539)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999999999887666653
No 141
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.98 E-value=0.00014 Score=52.59 Aligned_cols=75 Identities=21% Similarity=0.327 Sum_probs=39.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 039177 283 INGLCKQNNVEAGIKMIACMEELGS-KPDVITYNTLLQALCKVR--------ELNRLRELVKEMKWKGIVLNLQTYSIMI 353 (453)
Q Consensus 283 i~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~~--------~~~~a~~~~~~~~~~~~~p~~~~~~~li 353 (453)
|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.++++|+..+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3344444556666666666666665 556666666655554321 1233455555555555555555555555
Q ss_pred HHHH
Q 039177 354 DGLA 357 (453)
Q Consensus 354 ~~~~ 357 (453)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 5544
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.97 E-value=0.00096 Score=52.88 Aligned_cols=86 Identities=10% Similarity=0.128 Sum_probs=37.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 039177 284 NGLCKQNNVEAGIKMIACMEELGSKPDV--ITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGD 361 (453)
Q Consensus 284 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 361 (453)
..+...|++++|...|+.+......++. ...-.|...+...|++++|+..++...... .....+....+.|.+.|+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCC
Confidence 3344455555555555555543311111 122233444445555555555554322211 122334444445555555
Q ss_pred HHHHHHHHHH
Q 039177 362 IIEACGLLEE 371 (453)
Q Consensus 362 ~~~A~~~~~~ 371 (453)
.++|...|+.
T Consensus 134 ~~~A~~~y~~ 143 (145)
T PF09976_consen 134 YDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 143
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.0077 Score=50.60 Aligned_cols=185 Identities=16% Similarity=0.108 Sum_probs=126.5
Q ss_pred hHHHHHHHHHHHHc---C-CCcChh-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHH
Q 039177 187 SDELLGFVQEMKKL---G-FCFGMV-DYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDI-VCYTMVLNGVIVQEDYVKA 260 (453)
Q Consensus 187 ~~~a~~~~~~~~~~---g-~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~g~~~~a 260 (453)
+++..+++.++... | ..++.. .|..++-+....|+.+.|..+++.+...- |.. ..-..-.--+-..|++++|
T Consensus 28 seevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 28 SEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred HHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhH
Confidence 37777777776543 3 344443 36677777888899999999999988763 222 2111111224456889999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 261 EELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWK 340 (453)
Q Consensus 261 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 340 (453)
+++++.+++.+ +.|..++-.=+...-..|+.-+|++-+....+. +.-|...|.-+...|...|++++|.-.++++.-.
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 99999988876 456666666666666677766777766665553 4458888999999999999999999999888877
Q ss_pred CCCcCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCC
Q 039177 341 GIVLNLQTYSIMIDGLASKG---DIIEACGLLEEALNKG 376 (453)
Q Consensus 341 ~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~ 376 (453)
.+. +...+..+.+.+--.| +...|.+.+.+..+..
T Consensus 184 ~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 184 QPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred CCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 443 5555566666554444 4556788888777654
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.97 E-value=0.00059 Score=54.08 Aligned_cols=128 Identities=9% Similarity=0.000 Sum_probs=93.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH--HHHHHH
Q 039177 277 YTYNVYINGLCKQNNVEAGIKMIACMEELGSKPD--VITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNL--QTYSIM 352 (453)
Q Consensus 277 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l 352 (453)
..|..++..+ ..++...+...++.+.+....-. ....-.+...+...|++++|...|+.+......|+. ...-.|
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 3455555555 48888999999999988642211 123344557888999999999999999998644332 244557
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 039177 353 IDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQM 407 (453)
Q Consensus 353 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (453)
...+...|++++|+..++...... .....+......|.+.|+.++|...|+..
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 788899999999999997754333 23445666778899999999999999864
No 145
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.94 E-value=0.0014 Score=62.99 Aligned_cols=77 Identities=16% Similarity=0.195 Sum_probs=42.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH
Q 039177 285 GLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIE 364 (453)
Q Consensus 285 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 364 (453)
+......+.+|+.+++.+.... .-...|..+.+-|+..|+++.|.++|-+. ..++-.|.+|.+.|+++.
T Consensus 741 aai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence 3344555666666666655532 22234555566666666666666666432 123445666666666666
Q ss_pred HHHHHHHH
Q 039177 365 ACGLLEEA 372 (453)
Q Consensus 365 A~~~~~~m 372 (453)
|.++-++.
T Consensus 810 a~kla~e~ 817 (1636)
T KOG3616|consen 810 AFKLAEEC 817 (1636)
T ss_pred HHHHHHHh
Confidence 66655443
No 146
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.94 E-value=1.3e-05 Score=44.31 Aligned_cols=29 Identities=28% Similarity=0.684 Sum_probs=15.1
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHhhCC
Q 039177 383 MFDETICGLCQRGLVRKALELLKQMADKD 411 (453)
Q Consensus 383 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 411 (453)
+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 35555555555555555555555555444
No 147
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.94 E-value=0.0091 Score=59.63 Aligned_cols=148 Identities=11% Similarity=0.050 Sum_probs=99.0
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC--------------
Q 039177 81 EAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFR-------------- 146 (453)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------------- 146 (453)
..|..+...|+...+...|...|+...+-+ ..+...+....+.|++...++.|..+.-...+..
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 356667777777667777777777776553 5567788888999999999998888754433322
Q ss_pred ----CCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCCh
Q 039177 147 ----INRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKV 222 (453)
Q Consensus 147 ----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 222 (453)
.++...++.-|+...+.. +-|...|..+..+|...|.. ..|.++|....... +.+...-.-..-+-+..|.+
T Consensus 571 yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry--~~AlKvF~kAs~Lr-P~s~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRY--SHALKVFTKASLLR-PLSKYGRFKEAVMECDNGKY 646 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCce--ehHHHhhhhhHhcC-cHhHHHHHHHHHHHHHhhhH
Confidence 456666777777766542 23566888888888888888 78888887766543 22222222333445566777
Q ss_pred hHHHHHHHHHHh
Q 039177 223 FDALGILNQMKS 234 (453)
Q Consensus 223 ~~a~~~~~~m~~ 234 (453)
.+|+..+.....
T Consensus 647 keald~l~~ii~ 658 (1238)
T KOG1127|consen 647 KEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHHH
Confidence 777777666543
No 148
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.90 E-value=1.7e-05 Score=43.86 Aligned_cols=29 Identities=24% Similarity=0.515 Sum_probs=14.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 039177 208 DYTNVIRSLVKKEKVFDALGILNQMKSDG 236 (453)
Q Consensus 208 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 236 (453)
+|+++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 44555555555555555555555554443
No 149
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.89 E-value=0.00033 Score=50.76 Aligned_cols=74 Identities=12% Similarity=0.295 Sum_probs=37.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCChhhHHHH
Q 039177 317 LLQALCKVRELNRLRELVKEMKWKGI-VLNLQTYSIMIDGLASKG--------DIIEACGLLEEALNKGLCTQSSMFDET 387 (453)
Q Consensus 317 li~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~~~~~~~~~l 387 (453)
.|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+++.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444444666666666666666666 566666666666554422 122334444444444444444444444
Q ss_pred HHH
Q 039177 388 ICG 390 (453)
Q Consensus 388 i~~ 390 (453)
+..
T Consensus 111 l~~ 113 (120)
T PF08579_consen 111 LGS 113 (120)
T ss_pred HHH
Confidence 433
No 150
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.84 E-value=0.021 Score=51.49 Aligned_cols=133 Identities=15% Similarity=0.141 Sum_probs=99.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 039177 276 VYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDG 355 (453)
Q Consensus 276 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 355 (453)
..+.+..|.-+...|+...|.++-.+..- ||..-|...+.+++..++|++..++-.. ++ .+.-|..++.+
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv----~dkrfw~lki~aLa~~~~w~eL~~fa~s--kK----sPIGyepFv~~ 246 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFKV----PDKRFWWLKIKALAENKDWDELEKFAKS--KK----SPIGYEPFVEA 246 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcCC----cHHHHHHHHHHHHHhcCCHHHHHHHHhC--CC----CCCChHHHHHH
Confidence 34556667778888999888888766642 7889999999999999999988876543 22 44678889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHhchhcchhhHH
Q 039177 356 LASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADKDVSPGARVWEALLLSSVSKLDFVN 434 (453)
Q Consensus 356 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~~~~~~ 434 (453)
|.+.|+..+|..++.++ ++ ..-+..|.++|++.+|.+.-.+.. |...+..+...|-+..+...
T Consensus 247 ~~~~~~~~eA~~yI~k~------~~----~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~~~~~~~~~~~ 309 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKI------PD----EERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILKRCPGNNDQLI 309 (319)
T ss_pred HHHCCCHHHHHHHHHhC------Ch----HHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHHHCCCCChHHH
Confidence 99999999999988772 22 334888999999999988766653 66667777766655544443
No 151
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.83 E-value=0.0084 Score=51.94 Aligned_cols=183 Identities=11% Similarity=0.080 Sum_probs=114.1
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 039177 206 MVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCY---TMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVY 282 (453)
Q Consensus 206 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~---~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 282 (453)
...+-.....+.+.|++++|.+.|+.+...-+.. .... -.+..++.+.+++++|...+++..+.........+...
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 3334455666677899999999999998864432 2222 34567788999999999999999885433333344444
Q ss_pred HHHHHh--cC---------------C---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 039177 283 INGLCK--QN---------------N---VEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGI 342 (453)
Q Consensus 283 i~~~~~--~~---------------~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 342 (453)
+.+.+. .+ + ..+|.+. +..+++-|-...-..+|...+..+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~---------------~~~li~~yP~S~ya~~A~~rl~~l~~~-- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRD---------------FSKLVRGYPNSQYTTDATKRLVFLKDR-- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHH---------------HHHHHHHCcCChhHHHHHHHHHHHHHH--
Confidence 444331 11 1 1223333 334444444444455665555544433
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHh
Q 039177 343 VLNLQTYSIMIDGLASKGDIIEACGLLEEALNK--GLCTQSSMFDETICGLCQRGLVRKALELLKQMA 408 (453)
Q Consensus 343 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (453)
=...--.+..-|.+.|.+..|..-|+.+.+. +..........++.+|...|..++|..+...+.
T Consensus 174 --la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 --LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred --HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1111124566688889999999999988876 434445566677888999999999888776653
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.83 E-value=0.00053 Score=49.31 Aligned_cols=90 Identities=17% Similarity=0.082 Sum_probs=42.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCC
Q 039177 317 LLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGL 396 (453)
Q Consensus 317 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 396 (453)
+...+...|++++|..++..+.+.... +...+..+...+...|++++|.+.|+...... ..+...+..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 334444455555555555554443222 22344444445555555555555555544432 1122344444455555555
Q ss_pred HHHHHHHHHHHh
Q 039177 397 VRKALELLKQMA 408 (453)
Q Consensus 397 ~~~A~~~~~~m~ 408 (453)
+++|...+....
T Consensus 84 ~~~a~~~~~~~~ 95 (100)
T cd00189 84 YEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHH
Confidence 555555555543
No 153
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.77 E-value=0.00072 Score=62.32 Aligned_cols=87 Identities=10% Similarity=0.002 Sum_probs=45.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 039177 286 LCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEA 365 (453)
Q Consensus 286 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 365 (453)
+...|++++|++.|++.++... -+...|..+..+|.+.|++++|+..++.+++.... +...|..+..+|...|++++|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHHHH
Confidence 4445555555555555555321 13344555555555555555555555555554332 444555555555555555555
Q ss_pred HHHHHHHHH
Q 039177 366 CGLLEEALN 374 (453)
Q Consensus 366 ~~~~~~m~~ 374 (453)
...|++..+
T Consensus 90 ~~~~~~al~ 98 (356)
T PLN03088 90 KAALEKGAS 98 (356)
T ss_pred HHHHHHHHH
Confidence 555555554
No 154
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.75 E-value=0.056 Score=53.65 Aligned_cols=199 Identities=15% Similarity=0.064 Sum_probs=126.8
Q ss_pred HHHHHHHH--HhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 039177 172 CSLILSSV--CEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLN 249 (453)
Q Consensus 172 ~~~ll~~~--~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 249 (453)
|..+++++ .+.|.. ++|..+++.....+. .|..|...+-.+|.+.++.++|..+|++.... -|+..-...+..
T Consensus 44 ~a~vLkaLsl~r~gk~--~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFm 118 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKG--DEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFM 118 (932)
T ss_pred HHHHHHHHHHHHhcCc--hhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHH
Confidence 44555554 567777 888888777666553 37788888889999999999999999988876 455777777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC----------CHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 039177 250 GVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQN----------NVEAGIKMIACMEELGSKP-DVITYNTLL 318 (453)
Q Consensus 250 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~----------~~~~a~~~~~~m~~~~~~p-~~~~~~~li 318 (453)
+|.+.+++.+-.++--+|-+. ++-+...|=++++.+.+.- -...|.+.++.+.+.+-+. +..-...-.
T Consensus 119 ayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl 197 (932)
T KOG2053|consen 119 AYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYL 197 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHH
Confidence 888888776655444444331 2234444445555544321 1234666666666544111 111222223
Q ss_pred HHHHhcCCHHHHHHHH-HHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039177 319 QALCKVRELNRLRELV-KEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKG 376 (453)
Q Consensus 319 ~~~~~~~~~~~a~~~~-~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 376 (453)
..+...|.+++|..++ ....+.-..-+...-+.-++.+...+++.+..++-.++..+|
T Consensus 198 ~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 198 LILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 3445667788888888 344444344455555666777788888888888888877776
No 155
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.75 E-value=0.015 Score=58.20 Aligned_cols=180 Identities=9% Similarity=-0.032 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHcCCCcC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 039177 188 DELLGFVQEMKKLGFCFG-MVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDE 266 (453)
Q Consensus 188 ~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 266 (453)
..+...|-+..+.. ++ ...|..|...|...-+...|.+.|+...+.+.. |...+......|++..+++.|..+.-.
T Consensus 475 ~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 475 ALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 45555554444432 22 345777777777777777888888887776544 666777777888888888888777322
Q ss_pred HHHCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 039177 267 LLVLG-LVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLN 345 (453)
Q Consensus 267 m~~~g-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~ 345 (453)
.-+.. ...-...|...--.|.+.++...++.-|+...+..++ |...|..+..+|.+.|.+..|.++|.......+.
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~-- 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL-- 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH--
Confidence 22111 0011122222333466677777777777777664432 5667788888888888888888888776655322
Q ss_pred HHHHHHH--HHHHHhcCCHHHHHHHHHHHHH
Q 039177 346 LQTYSIM--IDGLASKGDIIEACGLLEEALN 374 (453)
Q Consensus 346 ~~~~~~l--i~~~~~~g~~~~A~~~~~~m~~ 374 (453)
.+|... ...-+..|++.+|...++....
T Consensus 629 -s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 629 -SKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred -hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 122222 2223456777777777776654
No 156
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.74 E-value=0.0013 Score=54.11 Aligned_cols=105 Identities=18% Similarity=0.178 Sum_probs=62.9
Q ss_pred CCChhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH
Q 039177 273 VPDVYTYNVYINGLCK-----QNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQ 347 (453)
Q Consensus 273 ~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 347 (453)
..+..+|..++..|.+ .|+.+-....++.|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ------------ 109 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQ------------ 109 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHH------------
Confidence 4677888888888764 46777777888888888888888888888887765 2211 011111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCC
Q 039177 348 TYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGL 396 (453)
Q Consensus 348 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 396 (453)
++..-| ..+-+-|++++++|...|+.||..++..|+..|++.+.
T Consensus 110 ---~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 110 ---AEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ---HHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 111111 11234455666666666666666666666666555443
No 157
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.74 E-value=0.00091 Score=54.92 Aligned_cols=115 Identities=10% Similarity=0.119 Sum_probs=78.1
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 039177 226 LGILNQMKSDGIKPDIVCYTMVLNGVIVQ-----EDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIA 300 (453)
Q Consensus 226 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 300 (453)
...|+.... -..|..+|..++..|.+. |..+-....++.|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+
T Consensus 34 ~~~f~~~~~--~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ 109 (228)
T PF06239_consen 34 EELFERAPG--QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQ 109 (228)
T ss_pred HHHHHHHhh--ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHH
Confidence 444554422 244899999999999855 7788888999999999999999999999998765 3221 111222
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 039177 301 CMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGD 361 (453)
Q Consensus 301 ~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 361 (453)
.+-- -| -.+-+-|++++++|...|+-||..++..|++.+.+.+.
T Consensus 110 ~~F~---------------hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 110 AEFM---------------HY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHhc---------------cC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2111 11 12345677777777777777777777777777765554
No 158
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.70 E-value=0.001 Score=47.71 Aligned_cols=92 Identities=14% Similarity=0.035 Sum_probs=42.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 039177 210 TNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQ 289 (453)
Q Consensus 210 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 289 (453)
..+...+...|++++|..++++..+.... +...+..+...+...+++++|.+.++...+.. ..+..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 33444445555555555555555443221 22344444445555555555555555544432 12223444444444555
Q ss_pred CCHHHHHHHHHHHH
Q 039177 290 NNVEAGIKMIACME 303 (453)
Q Consensus 290 ~~~~~a~~~~~~m~ 303 (453)
|+.+.|...+....
T Consensus 82 ~~~~~a~~~~~~~~ 95 (100)
T cd00189 82 GKYEEALEAYEKAL 95 (100)
T ss_pred HhHHHHHHHHHHHH
Confidence 55555555544443
No 159
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.70 E-value=0.049 Score=52.50 Aligned_cols=170 Identities=16% Similarity=0.150 Sum_probs=89.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-----
Q 039177 240 DIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITY----- 314 (453)
Q Consensus 240 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~----- 314 (453)
|....-.+..++.+.|.-++|.+.|-+.-. | .+.+..|...+++.+|.++-+...- |.+.|.
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~avelaq~~~l----~qv~tliak~a 917 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAVELAQRFQL----PQVQTLIAKQA 917 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHH
Confidence 555556677777777777777766643211 2 2345566777777777766554332 222221
Q ss_pred ---------HHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcCH----HHHHH-HHHHH----------HhcCCHHHHH
Q 039177 315 ---------NTLLQALCKVRELNRLRELVKEMKWK----GIVLNL----QTYSI-MIDGL----------ASKGDIIEAC 366 (453)
Q Consensus 315 ---------~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p~~----~~~~~-li~~~----------~~~g~~~~A~ 366 (453)
.--|..+.+.|..-+|-+++.+|.++ +.+|-. ....+ |+.-+ -++|..++|.
T Consensus 918 aqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat 997 (1189)
T KOG2041|consen 918 AQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDAT 997 (1189)
T ss_pred HHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhh
Confidence 11245556666666666666666543 222211 11111 11111 1356667777
Q ss_pred HHHHHHHHC-------CCCCChhhHHHHH--HHHHhCCCHHHHHHHHHHHhh-CCCCCCHHHHHHH
Q 039177 367 GLLEEALNK-------GLCTQSSMFDETI--CGLCQRGLVRKALELLKQMAD-KDVSPGARVWEAL 422 (453)
Q Consensus 367 ~~~~~m~~~-------~~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l 422 (453)
.+++..... +.--....|.-+| .--...|.++.|++.--.+.+ ..+-|....|..+
T Consensus 998 ~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySll 1063 (1189)
T KOG2041|consen 998 DLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLL 1063 (1189)
T ss_pred hhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHH
Confidence 655543221 1111123344444 334567889998887655555 3567777777765
No 160
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.68 E-value=0.0012 Score=58.65 Aligned_cols=132 Identities=13% Similarity=0.038 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 039177 242 VCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYING-LCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQA 320 (453)
Q Consensus 242 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 320 (453)
.+|..+++..-+.+..+.|..+|.+..+.+ ..+...|...... |.-.++.+.|..+|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356666777777777777777777776432 1223333333333 22245555577777776654 33455666666777
Q ss_pred HHhcCCHHHHHHHHHHHHHC-CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 321 LCKVRELNRLRELVKEMKWK-GIVL-NLQTYSIMIDGLASKGDIIEACGLLEEALNK 375 (453)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 375 (453)
+.+.++.+.|..+|+..... .... ....|...++-=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777776655 1111 2236677777666777777777777666653
No 161
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.66 E-value=0.0029 Score=47.97 Aligned_cols=12 Identities=0% Similarity=0.238 Sum_probs=4.3
Q ss_pred cCCHHHHHHHHH
Q 039177 324 VRELNRLRELVK 335 (453)
Q Consensus 324 ~~~~~~a~~~~~ 335 (453)
.|+.++|...++
T Consensus 89 ~~~~~~A~~~~~ 100 (119)
T TIGR02795 89 LGDKEKAKATLQ 100 (119)
T ss_pred hCChHHHHHHHH
Confidence 333333333333
No 162
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.65 E-value=0.0016 Score=57.85 Aligned_cols=144 Identities=14% Similarity=0.159 Sum_probs=104.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 039177 207 VDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNG-VIVQEDYVKAEELFDELLVLGLVPDVYTYNVYING 285 (453)
Q Consensus 207 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 285 (453)
.+|..+|+..-+.+..+.|..+|.+.++.+. .+...|-..... |...++.+.|..+|+...+. +..+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4688899999999999999999999986532 233344433333 33357777799999998775 45677888999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 039177 286 LCKQNNVEAGIKMIACMEELGSKPDV----ITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGL 356 (453)
Q Consensus 286 ~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 356 (453)
+.+.++.+.|..+|+..... + +.. ..|...++.=.+.|+++.+.++.+.+.+. .|+......+++-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 99999999999999998875 3 333 48899999889999999999999888876 33434444444444
No 163
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.62 E-value=0.018 Score=51.40 Aligned_cols=93 Identities=17% Similarity=0.147 Sum_probs=50.7
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CcCHH-H
Q 039177 282 YINGLCKQ-NNVEAGIKMIACMEEL----GSKPD--VITYNTLLQALCKVRELNRLRELVKEMKWKGI-----VLNLQ-T 348 (453)
Q Consensus 282 li~~~~~~-~~~~~a~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----~p~~~-~ 348 (453)
+...|... |++++|.+.|++..+. | .+. ..++..+...+.+.|++++|..+|+++..... ..+.. .
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 33345555 6777777777665532 2 111 23556666777777777777777777766432 12222 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 349 YSIMIDGLASKGDIIEACGLLEEALNK 375 (453)
Q Consensus 349 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 375 (453)
|-..+-++...|+...|.+.|++....
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 223344555567777777777776544
No 164
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.60 E-value=0.0024 Score=48.47 Aligned_cols=95 Identities=12% Similarity=-0.018 Sum_probs=43.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CChhhHHHHHHH
Q 039177 315 NTLLQALCKVRELNRLRELVKEMKWKGIV--LNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLC--TQSSMFDETICG 390 (453)
Q Consensus 315 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~ 390 (453)
..+...+.+.|++++|...|..+...... .....+..+..++.+.|+++.|...|+.+...... .....+..+...
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 34444445555555555555555443211 01233444555555555555555555555443111 112234444445
Q ss_pred HHhCCCHHHHHHHHHHHhh
Q 039177 391 LCQRGLVRKALELLKQMAD 409 (453)
Q Consensus 391 ~~~~g~~~~A~~~~~~m~~ 409 (453)
+.+.|+.++|...++++.+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHhCChHHHHHHHHHHHH
Confidence 5555555555555555553
No 165
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.57 E-value=0.00018 Score=50.85 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=8.3
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 039177 352 MIDGLASKGDIIEACGLLEE 371 (453)
Q Consensus 352 li~~~~~~g~~~~A~~~~~~ 371 (453)
+..+|.+.|++++|..+++.
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 34444444444444444433
No 166
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.54 E-value=0.0076 Score=47.27 Aligned_cols=97 Identities=8% Similarity=-0.011 Sum_probs=62.7
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 039177 206 MVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYING 285 (453)
Q Consensus 206 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 285 (453)
......+..-+...|++++|.++|+.+....+. +..-|-.|..++-..|++.+|+..|....... +.|...+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 334445555566677777777777777665444 55556666666667777777777777766655 2455566666666
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 039177 286 LCKQNNVEAGIKMIACMEE 304 (453)
Q Consensus 286 ~~~~~~~~~a~~~~~~m~~ 304 (453)
+...|+.+.|.+.|+..+.
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777766554
No 167
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.54 E-value=0.00019 Score=50.73 Aligned_cols=81 Identities=23% Similarity=0.194 Sum_probs=61.1
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 039177 289 QNNVEAGIKMIACMEELGSK-PDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACG 367 (453)
Q Consensus 289 ~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 367 (453)
.|+++.|+.+++.+.+.... ++...+-.+..+|.+.|++++|..+++. .+.+.. +....-.+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 58899999999999986532 2445566689999999999999999988 333222 33445566889999999999999
Q ss_pred HHHH
Q 039177 368 LLEE 371 (453)
Q Consensus 368 ~~~~ 371 (453)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9976
No 168
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.53 E-value=0.0029 Score=49.53 Aligned_cols=93 Identities=8% Similarity=-0.053 Sum_probs=59.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 039177 281 VYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKG 360 (453)
Q Consensus 281 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 360 (453)
.+-..+...|++++|..+|+.+...... +..-|-.|..+|-..|++++|+..|.......+. |+..+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcC
Confidence 3444456677777777777776663321 3345556666666677777777777776666654 6666666777777777
Q ss_pred CHHHHHHHHHHHHHC
Q 039177 361 DIIEACGLLEEALNK 375 (453)
Q Consensus 361 ~~~~A~~~~~~m~~~ 375 (453)
+.+.|.+.|+..+..
T Consensus 118 ~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 118 NVCYAIKALKAVVRI 132 (157)
T ss_pred CHHHHHHHHHHHHHH
Confidence 777777777666544
No 169
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.51 E-value=0.0038 Score=57.58 Aligned_cols=89 Identities=9% Similarity=-0.014 Sum_probs=47.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 039177 214 RSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVE 293 (453)
Q Consensus 214 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~ 293 (453)
..+...|++++|++.|++..+.... +...|..+..+|...|++++|+..++..++.. +.+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 3344455555555555555554333 44455555555555566666665555555533 123444555555555556666
Q ss_pred HHHHHHHHHHH
Q 039177 294 AGIKMIACMEE 304 (453)
Q Consensus 294 ~a~~~~~~m~~ 304 (453)
+|...|+...+
T Consensus 88 eA~~~~~~al~ 98 (356)
T PLN03088 88 TAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHH
Confidence 66665555555
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.50 E-value=0.01 Score=48.61 Aligned_cols=62 Identities=15% Similarity=-0.052 Sum_probs=30.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 208 DYTNVIRSLVKKEKVFDALGILNQMKSDGIKPD--IVCYTMVLNGVIVQEDYVKAEELFDELLV 269 (453)
Q Consensus 208 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 269 (453)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555555555555555554322211 23444444455555555555555554444
No 171
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.50 E-value=0.029 Score=50.05 Aligned_cols=129 Identities=9% Similarity=0.021 Sum_probs=64.9
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHH----CCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHH
Q 039177 244 YTMVLNGVIVQ-EDYVKAEELFDELLV----LGLVP-DVYTYNVYINGLCKQNNVEAGIKMIACMEELGSK-----PDVI 312 (453)
Q Consensus 244 ~~~ll~~~~~~-g~~~~a~~~~~~m~~----~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~~ 312 (453)
+..+...|-.. |+++.|++.|.+..+ .|... -...+..+...+.+.|++++|.++|+++...-.. .+..
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 33444455555 677777777776543 22100 1223455666677777777777777777654322 1111
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCcC--HHHHHHHHHHHHh--cCCHHHHHHHHHHH
Q 039177 313 -TYNTLLQALCKVRELNRLRELVKEMKWKG--IVLN--LQTYSIMIDGLAS--KGDIIEACGLLEEA 372 (453)
Q Consensus 313 -~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~p~--~~~~~~li~~~~~--~g~~~~A~~~~~~m 372 (453)
.|-..+-++...|++..|.+.++...... +..+ ......||.+|-. ...++.|+.-|+.+
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 22233335556677777777777766542 2212 3345555666543 22344444444443
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.48 E-value=0.0073 Score=49.42 Aligned_cols=89 Identities=12% Similarity=-0.145 Sum_probs=56.4
Q ss_pred HhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcC--hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 039177 170 KTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFG--MVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMV 247 (453)
Q Consensus 170 ~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 247 (453)
..+..+...+...|+. ++|...|++..+....+. ...+..+...+.+.|++++|+..+++..+.... +...+..+
T Consensus 36 ~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 36 FVYYRDGMSAQADGEY--AEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHcCCH--HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 3556666666777777 777777777765532221 346777777777778888887777777765332 45555556
Q ss_pred HHHHHhcCCHHHHH
Q 039177 248 LNGVIVQEDYVKAE 261 (453)
Q Consensus 248 l~~~~~~g~~~~a~ 261 (453)
...+...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 66666666654444
No 173
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.48 E-value=0.022 Score=47.98 Aligned_cols=180 Identities=11% Similarity=0.099 Sum_probs=97.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 039177 209 YTNVIRSLVKKEKVFDALGILNQMKSDGIK--PDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGL 286 (453)
Q Consensus 209 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 286 (453)
+-.....+.+.|++.+|.+.|+.+...-+. --....-.++.++.+.|+++.|...++++++.-.......+...+.+.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 334456667788888888888888765221 123345567778888888888888888887643221222223233222
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 039177 287 CKQNNVEAGIKMIACMEELGSKPD-------VITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASK 359 (453)
Q Consensus 287 ~~~~~~~~a~~~~~~m~~~~~~p~-------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 359 (453)
+......... . ...| ...+..++.-|-...-..+|...+..+... =...--.+..-|.+.
T Consensus 88 ~~~~~~~~~~-------~--~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~ 154 (203)
T PF13525_consen 88 SYYKQIPGIL-------R--SDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKR 154 (203)
T ss_dssp HHHHHHHHHH----------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCT
T ss_pred HHHHhCccch-------h--cccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHc
Confidence 2111111110 0 0111 124555666666666666666665555443 111122356678888
Q ss_pred CCHHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhCCCHHHHH
Q 039177 360 GDIIEACGLLEEALNK--GLCTQSSMFDETICGLCQRGLVRKAL 401 (453)
Q Consensus 360 g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~ 401 (453)
|.+..|..-++.+.+. +..........++.+|.+.|..+.+.
T Consensus 155 ~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp T-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 8888888888888776 21112234566677888888776443
No 174
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.47 E-value=0.0016 Score=56.09 Aligned_cols=100 Identities=15% Similarity=0.127 Sum_probs=80.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH
Q 039177 285 GLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIE 364 (453)
Q Consensus 285 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 364 (453)
-..+.+++.+|++.|.+.++... -|.+.|..=..+|++.|.++.|.+=.+..+..+.. ...+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 35678999999999999998542 26777888889999999999999888888777444 55789999999999999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHH
Q 039177 365 ACGLLEEALNKGLCTQSSMFDETI 388 (453)
Q Consensus 365 A~~~~~~m~~~~~~~~~~~~~~li 388 (453)
|++.|++..+ +.|+..+|..=+
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL 189 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNL 189 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHH
Confidence 9999988876 467777654433
No 175
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.043 Score=46.51 Aligned_cols=140 Identities=13% Similarity=0.097 Sum_probs=69.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH-----
Q 039177 280 NVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMID----- 354 (453)
Q Consensus 280 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~----- 354 (453)
+.++......+.+.-...++.++++....-++...+.|.+.-.+.|+.+.|...|++..+..-+.|..+.+.++.
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 444455555555555555565555544444555555566666666666666666665554432333333333322
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 039177 355 GLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADKDVSPGARVWEAL 422 (453)
Q Consensus 355 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 422 (453)
.|.-.+++..|...+.++...+ ..+....|.-.-+..-.|+..+|++.++.|. .+.|...+-+++
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~--~~~P~~~l~es~ 325 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMV--QQDPRHYLHESV 325 (366)
T ss_pred heecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHh--ccCCccchhhhH
Confidence 2334455555666665555443 2222222322333334456666666666665 334544444433
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.42 E-value=0.0048 Score=50.31 Aligned_cols=61 Identities=7% Similarity=-0.135 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 280 NVYINGLCKQNNVEAGIKMIACMEELGSKP--DVITYNTLLQALCKVRELNRLRELVKEMKWK 340 (453)
Q Consensus 280 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 340 (453)
..+...+...|++++|...|+........+ ...++..+...|...|++++|+..++.....
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334444444455555555555444322111 1124444445555555555555555554443
No 177
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.30 E-value=0.012 Score=48.00 Aligned_cols=96 Identities=14% Similarity=-0.063 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 039177 311 VITYNTLLQALCKVRELNRLRELVKEMKWKGIVL--NLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETI 388 (453)
Q Consensus 311 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 388 (453)
...|..+...+...|++++|...|+........+ ...++..+...|...|++++|...++...... +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4567778888889999999999999998764333 23578899999999999999999999988753 22344455666
Q ss_pred HHHH-------hCCCHHHHHHHHHHH
Q 039177 389 CGLC-------QRGLVRKALELLKQM 407 (453)
Q Consensus 389 ~~~~-------~~g~~~~A~~~~~~m 407 (453)
..+. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 6666 778888666555543
No 178
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.29 E-value=0.23 Score=49.52 Aligned_cols=53 Identities=11% Similarity=0.060 Sum_probs=27.2
Q ss_pred ChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhH
Q 039177 168 DGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFD 224 (453)
Q Consensus 168 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 224 (453)
|..|...+-..|.+.+.. +++..+|+...... |+......+-.+|++.+.+.+
T Consensus 76 D~~tLq~l~~~y~d~~~~--d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 76 DDLTLQFLQNVYRDLGKL--DEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred chHHHHHHHHHHHHHhhh--hHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555 55555555544432 444444445555555555443
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.28 E-value=0.028 Score=54.39 Aligned_cols=143 Identities=13% Similarity=0.066 Sum_probs=88.4
Q ss_pred CCCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhc--------CCHHHHHHHHHHH
Q 039177 272 LVPDVYTYNVYINGLCKQ-----NNVEAGIKMIACMEELGSKPDV-ITYNTLLQALCKV--------RELNRLRELVKEM 337 (453)
Q Consensus 272 ~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~--------~~~~~a~~~~~~~ 337 (453)
.+.+...|..++.+.... +..+.|..+|++..+. .|+- ..|..+..+|... +++..+.+.....
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 345667777777764432 2266777778777774 3553 2333333333221 1223333333333
Q ss_pred HHC-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCH
Q 039177 338 KWK-GIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADKDVSPGA 416 (453)
Q Consensus 338 ~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 416 (453)
... ....+...|.++...+...|++++|...+++....+ |+...|..+...+...|+.++|.+.+++.. .+.|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~--~L~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAF--NLRPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hcCCCC
Confidence 332 123355677777666667789999999998888765 566778888888888999999998888876 345554
Q ss_pred HHHH
Q 039177 417 RVWE 420 (453)
Q Consensus 417 ~~~~ 420 (453)
.||.
T Consensus 487 pt~~ 490 (517)
T PRK10153 487 NTLY 490 (517)
T ss_pred chHH
Confidence 4443
No 180
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.27 E-value=0.031 Score=42.15 Aligned_cols=104 Identities=11% Similarity=0.057 Sum_probs=52.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hhhHHHHHHH
Q 039177 212 VIRSLVKKEKVFDALGILNQMKSDGIKPD--IVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPD----VYTYNVYING 285 (453)
Q Consensus 212 li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~ 285 (453)
+..++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|..++++..... |+ ......+..+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 34455556666666666666666554432 2233445555666666666666666655432 22 1111222234
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 039177 286 LCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQAL 321 (453)
Q Consensus 286 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 321 (453)
+...|+.++|.+.+-.... ++...|.--|..|
T Consensus 85 L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~y 116 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA----ETLPRYRRAIRFY 116 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 4556666666666544443 2333444444444
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.21 E-value=0.046 Score=52.96 Aligned_cols=35 Identities=9% Similarity=-0.019 Sum_probs=20.0
Q ss_pred CCcChhhHHHHHHHHHhcC-----ChhHHHHHHHHHHhCC
Q 039177 202 FCFGMVDYTNVIRSLVKKE-----KVFDALGILNQMKSDG 236 (453)
Q Consensus 202 ~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~~ 236 (453)
.+.+...|...+.+..... ..+.|..+|++..+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld 372 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE 372 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC
Confidence 3455666666666544322 2556777777776653
No 182
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.17 E-value=0.035 Score=52.99 Aligned_cols=228 Identities=12% Similarity=0.063 Sum_probs=127.1
Q ss_pred CCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHH
Q 039177 75 NCEPPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAI 154 (453)
Q Consensus 75 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~ 154 (453)
.+.|.+..+..-+-.+...|.+++|.++- +......-|.-|......+-+++-|++.|.++... .+-+-+
T Consensus 551 ~i~~~evp~~~~m~q~Ieag~f~ea~~ia-------clgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl---~~L~li 620 (1081)
T KOG1538|consen 551 SISAVEVPQSAPMYQYIERGLFKEAYQIA-------CLGVTDTDWRELAMEALEALDFETARKAYIRVRDL---RYLELI 620 (1081)
T ss_pred eeecccccccccchhhhhccchhhhhccc-------ccceecchHHHHHHHHHhhhhhHHHHHHHHHHhcc---HHHHHH
Confidence 35566666777777788888888776543 22333446777777777888889999888876653 344444
Q ss_pred HHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHH--
Q 039177 155 EILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQM-- 232 (453)
Q Consensus 155 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-- 232 (453)
.-++++.+.|-.|+.... ...|+-.|.+ .+|.++|.+ .|.+ |..+.+|.....++.|.+++..-
T Consensus 621 ~EL~~~k~rge~P~~iLl---A~~~Ay~gKF--~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~~g~~ 686 (1081)
T KOG1538|consen 621 SELEERKKRGETPNDLLL---ADVFAYQGKF--HEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLGSGDP 686 (1081)
T ss_pred HHHHHHHhcCCCchHHHH---HHHHHhhhhH--HHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhhcCCh
Confidence 556778888888887643 3345667777 788887743 4422 23445555555555555544221
Q ss_pred ----------HhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH------HHHCCCC---CChhhHHHHHHHHHhcCC
Q 039177 233 ----------KSD--GIKPDIVCYTMVLNGVIVQEDYVKAEELFDE------LLVLGLV---PDVYTYNVYINGLCKQNN 291 (453)
Q Consensus 233 ----------~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~------m~~~g~~---~~~~~~~~li~~~~~~~~ 291 (453)
.+. .++.. .+....+...|+.++|..+.-+ +.+-+.+ .+..+...+...+.+...
T Consensus 687 ~eKKmL~RKRA~WAr~~keP----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~ 762 (1081)
T KOG1538|consen 687 KEKKMLIRKRADWARNIKEP----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDS 762 (1081)
T ss_pred HHHHHHHHHHHHHhhhcCCc----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccc
Confidence 110 11100 1233344455666666544321 1111111 223333333333444555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 292 VEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKW 339 (453)
Q Consensus 292 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 339 (453)
+..|-++|..|-. ...+++.....+++++|..+-+...+
T Consensus 763 ~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 763 PGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred cchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc
Confidence 6666666666543 23455666666777777666554443
No 183
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.17 E-value=0.0015 Score=43.96 Aligned_cols=50 Identities=20% Similarity=0.188 Sum_probs=22.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 324 VRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALN 374 (453)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 374 (453)
.|++++|..+|+.+....+. +...+..+..+|.+.|++++|.++++.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444444444444333 444444444444444444444444444443
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.15 E-value=0.033 Score=42.06 Aligned_cols=89 Identities=18% Similarity=0.010 Sum_probs=44.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--cCHHHHHHHHHHHHhc
Q 039177 284 NGLCKQNNVEAGIKMIACMEELGSKPD--VITYNTLLQALCKVRELNRLRELVKEMKWKGIV--LNLQTYSIMIDGLASK 359 (453)
Q Consensus 284 ~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~li~~~~~~ 359 (453)
.++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|..+++........ .+......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 344555666666666666666554432 124444555556666666666666655544211 0112222233344555
Q ss_pred CCHHHHHHHHHHH
Q 039177 360 GDIIEACGLLEEA 372 (453)
Q Consensus 360 g~~~~A~~~~~~m 372 (453)
|+.++|+..+-..
T Consensus 89 gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 89 GRPKEALEWLLEA 101 (120)
T ss_pred CCHHHHHHHHHHH
Confidence 6666666655443
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.15 E-value=0.0025 Score=42.80 Aligned_cols=53 Identities=11% Similarity=0.209 Sum_probs=46.4
Q ss_pred HhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccC
Q 039177 91 AENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKF 145 (453)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 145 (453)
.+.|++++|..+|+.+.... +.+..++..+..+|.+.|++++|..+++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46799999999999999874 668889999999999999999999999997653
No 186
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.14 E-value=0.016 Score=50.04 Aligned_cols=102 Identities=16% Similarity=0.105 Sum_probs=74.1
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 039177 214 RSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVE 293 (453)
Q Consensus 214 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~ 293 (453)
.-+.+.+++++|+..|.+..+..+. |.+-|..=..+|++.|.++.|++-.+..+... +....+|..|-.+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 4556778888888888888876544 77777777788888888888887777766643 223567788888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039177 294 AGIKMIACMEELGSKPDVITYNTLLQ 319 (453)
Q Consensus 294 ~a~~~~~~m~~~~~~p~~~~~~~li~ 319 (453)
+|.+.|+..++ +.|+..+|-.=+.
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHHH
Confidence 88888887777 5577665544333
No 187
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.09 E-value=0.11 Score=41.84 Aligned_cols=125 Identities=15% Similarity=0.060 Sum_probs=68.2
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCcCHHHH
Q 039177 273 VPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKG---IVLNLQTY 349 (453)
Q Consensus 273 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~ 349 (453)
-|++..--.+..+..+.|+..+|...|++...--..-|....-.+.++....++...|...++.+-+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 355555555666666666666666666666553344455566666666666666666666666665542 2233 23
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHH
Q 039177 350 SIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKAL 401 (453)
Q Consensus 350 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 401 (453)
-.+.+.|...|+..+|...|+.....- |+...-......+.+.|+.+++.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHH
Confidence 345556666666666666666665542 22222111233344555544443
No 188
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.06 E-value=0.0035 Score=41.61 Aligned_cols=51 Identities=16% Similarity=0.099 Sum_probs=20.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039177 321 LCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEA 372 (453)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 372 (453)
+.+.|++++|...|+.+++..+. +...+..+..++...|++++|...|+++
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33344444444444444443322 3333344444444444444444444443
No 189
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.05 E-value=0.0041 Score=41.30 Aligned_cols=56 Identities=14% Similarity=0.162 Sum_probs=33.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 213 IRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLV 269 (453)
Q Consensus 213 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 269 (453)
...+.+.|++++|++.|+.+.+..+. +...+..+..++...|++++|...|+++++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556666666666666666665433 555666666666666666666666666654
No 190
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.052 Score=47.22 Aligned_cols=111 Identities=14% Similarity=0.048 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCChhhHHH
Q 039177 310 DVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASK---GDIIEACGLLEEALNKGLCTQSSMFDE 386 (453)
Q Consensus 310 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~~~~~~~~~ 386 (453)
|...|-.|...|...|+++.|..-|....+...+ +...+..+..++... ....++..+|+++...+ ..+......
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 5556666666666666666666666666665222 344444444433322 12345666666666654 334445555
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHh
Q 039177 387 TICGLCQRGLVRKALELLKQMADKDVSPGARVWEALLL 424 (453)
Q Consensus 387 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 424 (453)
|...+...|++.+|...|+.|. +..|....+..+|.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL--~~lp~~~~rr~~ie 268 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLL--DLLPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHH--hcCCCCCchHHHHH
Confidence 5566666666666666666666 33454455555554
No 191
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.97 E-value=0.38 Score=46.77 Aligned_cols=221 Identities=11% Similarity=0.049 Sum_probs=126.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC------------------------CCcHHHHHHHHHHHHHCCCccC
Q 039177 113 ETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFR------------------------INRVGFAIEILNCMINDGFCVD 168 (453)
Q Consensus 113 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------------------------~~~~~~a~~~~~~m~~~~~~p~ 168 (453)
.|.+..|..+.......-.++-|...|-+..... -|.+++|.++|-+|-++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD---- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD---- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh----
Confidence 4666677777666666666666666665543322 356666666665554432
Q ss_pred hHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 039177 169 GKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFG----MVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCY 244 (453)
Q Consensus 169 ~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 244 (453)
..+..+.+.|++ -.+.+++ ..-|-..| ...|+.+...++....+++|.+.|..-.. .
T Consensus 765 -----LAielr~klgDw--frV~qL~---r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------~--- 825 (1189)
T KOG2041|consen 765 -----LAIELRKKLGDW--FRVYQLI---RNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------T--- 825 (1189)
T ss_pred -----hhHHHHHhhhhH--HHHHHHH---HccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------h---
Confidence 223444555555 3333332 22111111 24577777777777777777777765432 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 039177 245 TMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKV 324 (453)
Q Consensus 245 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 324 (453)
...+.++.+..++++-+.+...+ +.+....-.+..++.+.|.-++|.+.|-+... |. ..+..|...
T Consensus 826 e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----pk-----aAv~tCv~L 891 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----PK-----AAVHTCVEL 891 (1189)
T ss_pred HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----cH-----HHHHHHHHH
Confidence 23566666666666655554443 34566677788888888888888877654332 22 345667777
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHH--------------HHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 325 RELNRLRELVKEMKWKGIVLNLQTY--------------SIMIDGLASKGDIIEACGLLEEALN 374 (453)
Q Consensus 325 ~~~~~a~~~~~~~~~~~~~p~~~~~--------------~~li~~~~~~g~~~~A~~~~~~m~~ 374 (453)
+++.+|.++-+...-. ...+. ---|..+.+.|+.-+|-+++.+|.+
T Consensus 892 nQW~~avelaq~~~l~----qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 892 NQWGEAVELAQRFQLP----QVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHHHhccch----hHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 7787777765533221 11111 1124556677877777777777754
No 192
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.96 E-value=0.0053 Score=41.32 Aligned_cols=58 Identities=19% Similarity=0.076 Sum_probs=23.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 039177 314 YNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKG-DIIEACGLLEEA 372 (453)
Q Consensus 314 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m 372 (453)
|..+...+.+.|++++|+..|...++.... +...|..+..+|...| ++++|++.|++.
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 333444444444444444444444443222 3333444444444444 344444444433
No 193
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.93 E-value=0.028 Score=42.85 Aligned_cols=51 Identities=10% Similarity=0.053 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHH
Q 039177 307 SKPDVITYNTLLQALCKVRELNRLRELVKEMKWK-GIVLNLQTYSIMIDGLA 357 (453)
Q Consensus 307 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~li~~~~ 357 (453)
..|+..+..+++.+|+..+++..|.++.+...+. ++..+...|..|+.-..
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4466666666666666666666666666665554 55555566666665443
No 194
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.93 E-value=0.016 Score=44.13 Aligned_cols=96 Identities=20% Similarity=0.272 Sum_probs=61.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 039177 310 DVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETIC 389 (453)
Q Consensus 310 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 389 (453)
|..++..+|.++++.|+++....+.+..= |+.++... ..+. --....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 44567777777777777777766665332 22221100 0000 0112356778888888888
Q ss_pred HHHhCCCHHHHHHHHHHHhh-CCCCCCHHHHHHHHhc
Q 039177 390 GLCQRGLVRKALELLKQMAD-KDVSPGARVWEALLLS 425 (453)
Q Consensus 390 ~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~ll~a 425 (453)
+|+..|++..|+++++...+ .++..+..+|..|+.=
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 88888888888888888765 5777778888887764
No 195
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.88 E-value=0.26 Score=42.78 Aligned_cols=175 Identities=10% Similarity=0.051 Sum_probs=111.8
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHcCCCcChhh---HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 039177 177 SSVCEQRDLSSDELLGFVQEMKKLGFCFGMVD---YTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIV 253 (453)
Q Consensus 177 ~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 253 (453)
..+...|+. ++|.+.|+.+...- +-+... .-.++.+|.+.+++++|...+++..+..+.-...-|...+.+.+.
T Consensus 40 ~~~~~~g~y--~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 40 QQKLQDGNW--KQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHCCCH--HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 334667888 89999999998864 222222 245678889999999999999999886443333344444444432
Q ss_pred --cC---------------CH---HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 039177 254 --QE---------------DY---VKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVIT 313 (453)
Q Consensus 254 --~g---------------~~---~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 313 (453)
.+ +. .+|...|+.+++ -|=.+.-..+|...+..+... .- ..
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~---la-~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDR---LA-KY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHH---HH-HH
Confidence 11 11 233344444443 333334455555544444331 01 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039177 314 YNTLLQALCKVRELNRLRELVKEMKWK--GIVLNLQTYSIMIDGLASKGDIIEACGLLEEAL 373 (453)
Q Consensus 314 ~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 373 (453)
--.+...|.+.|.+..|..-++.+++. +..........++.+|...|..++|.+....+.
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 125667788999999999999999886 444456677788899999999999988877654
No 196
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.86 E-value=0.0083 Score=47.58 Aligned_cols=57 Identities=19% Similarity=0.258 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039177 315 NTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEA 372 (453)
Q Consensus 315 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 372 (453)
..++..+...|++++|..+...+....+. +...|..+|.+|...|+..+|.+.|+.+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 33334444444444444444444444333 4444444444444444444444444444
No 197
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.83 E-value=0.0065 Score=40.87 Aligned_cols=61 Identities=15% Similarity=0.121 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 039177 207 VDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQE-DYVKAEELFDELL 268 (453)
Q Consensus 207 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~ 268 (453)
.+|..+...+.+.|++++|+..|++..+.... +...|..+..++...| ++++|++.++..+
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 34445555555555555555555555544322 4444445555555555 4555555555444
No 198
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.71 E-value=0.32 Score=41.49 Aligned_cols=131 Identities=11% Similarity=0.036 Sum_probs=72.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-----H
Q 039177 244 YTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTL-----L 318 (453)
Q Consensus 244 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-----i 318 (453)
.+.++..+.-.|.+.-....+.+.++...+.++.....+.+.-.+.|+.+.|...|+...+..-+.|..+++.+ .
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 34455555555666666666666666554455566666666666666666666666655543333333333322 2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 319 QALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNK 375 (453)
Q Consensus 319 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 375 (453)
..|.-.+++..|...+.++...+.. |....|.-.-+..-.|+..+|++.++.|.+.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344556666666666666665433 4433333333333346777777777777654
No 199
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.68 E-value=0.015 Score=46.08 Aligned_cols=71 Identities=20% Similarity=0.266 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhh-----CCCCCCHHHH
Q 039177 348 TYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMAD-----KDVSPGARVW 419 (453)
Q Consensus 348 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~ 419 (453)
+...++..+...|++++|..+.+.+...+ +.+...|..+|.+|...|+..+|.++|+++.. .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34445555555666666666666655544 33455566666666666666666665555432 2555555543
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.67 E-value=0.057 Score=47.29 Aligned_cols=96 Identities=14% Similarity=0.017 Sum_probs=49.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--cCHHHHHH
Q 039177 278 TYNVYINGLCKQNNVEAGIKMIACMEELGSKPDV----ITYNTLLQALCKVRELNRLRELVKEMKWKGIV--LNLQTYSI 351 (453)
Q Consensus 278 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~ 351 (453)
.|...+..+.+.|++++|...|+.+.+.- |+. ..+-.+...|...|++++|...|..+.+.-.. .....+-.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 34444444445566666666666665532 322 34455555666666666666666666543111 12233333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 352 MIDGLASKGDIIEACGLLEEALNK 375 (453)
Q Consensus 352 li~~~~~~g~~~~A~~~~~~m~~~ 375 (453)
+...+...|+.++|..+|+.+.+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444555556666666666655544
No 201
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.67 E-value=0.5 Score=43.27 Aligned_cols=77 Identities=12% Similarity=-0.015 Sum_probs=40.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 039177 210 TNVIRSLVKKEKVFDALGILNQMKSDG---IKPDIVCYTMVLNGVIV---QEDYVKAEELFDELLVLGLVPDVYTYNVYI 283 (453)
Q Consensus 210 ~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 283 (453)
..++-+|....+++..+++++.+...- +.-....--...-++.+ .|+.++|++++..++...-.++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 344445666667777777777666531 11011111122233444 566666666666654444455666665555
Q ss_pred HHH
Q 039177 284 NGL 286 (453)
Q Consensus 284 ~~~ 286 (453)
..|
T Consensus 225 RIy 227 (374)
T PF13281_consen 225 RIY 227 (374)
T ss_pred HHH
Confidence 544
No 202
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.67 E-value=0.28 Score=41.28 Aligned_cols=174 Identities=9% Similarity=-0.027 Sum_probs=99.6
Q ss_pred HHHhcCCCChHHHHHHHHHHHHcC--CCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 039177 178 SVCEQRDLSSDELLGFVQEMKKLG--FCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQE 255 (453)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 255 (453)
.+...|+. .+|.+.|+.+...- -+......-.++.++.+.|+++.|...+++..+.-+.-...-+...+.+.+...
T Consensus 14 ~~~~~g~y--~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 14 EALQQGDY--EEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHCT-H--HHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHCCCH--HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 35677887 89999999988763 122234466778899999999999999999887533322223333333332211
Q ss_pred CHHHHHHHHHHHHHCCCCCC-------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 039177 256 DYVKAEELFDELLVLGLVPD-------VYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELN 328 (453)
Q Consensus 256 ~~~~a~~~~~~m~~~g~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 328 (453)
...... . ...| ...+..++.-|=.+....+|...+..+.+. . ...--.+...|.+.|.+.
T Consensus 92 ~~~~~~-------~--~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---l-a~~e~~ia~~Y~~~~~y~ 158 (203)
T PF13525_consen 92 QIPGIL-------R--SDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---L-AEHELYIARFYYKRGKYK 158 (203)
T ss_dssp HHHHHH----------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---H-HHHHHHHHHHHHCTT-HH
T ss_pred hCccch-------h--cccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHcccHH
Confidence 111110 0 0011 223444555555556666666655555431 0 111223567889999999
Q ss_pred HHHHHHHHHHHC--CCCcCHHHHHHHHHHHHhcCCHHHHH
Q 039177 329 RLRELVKEMKWK--GIVLNLQTYSIMIDGLASKGDIIEAC 366 (453)
Q Consensus 329 ~a~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~ 366 (453)
.|..-++.+++. +..........++.+|.+.|..+.|.
T Consensus 159 aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 159 AAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 999999998887 22223345677888898888887554
No 203
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.66 E-value=0.53 Score=43.40 Aligned_cols=145 Identities=15% Similarity=0.193 Sum_probs=102.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH-HHHH
Q 039177 276 VYTYNVYINGLCKQNNVEAGIKMIACMEELG-SKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTY-SIMI 353 (453)
Q Consensus 276 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~li 353 (453)
..+|...|++-.+..-++.|..+|-++.+.| +.+++..++++|.-++. |+...|.++|+.-..+ -||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3456777777777778899999999999888 56777888888887765 6778888888866555 2243333 4455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHhch
Q 039177 354 DGLASKGDIIEACGLLEEALNKGLCTQ--SSMFDETICGLCQRGLVRKALELLKQMADKDVSPGARVWEALLLSS 426 (453)
Q Consensus 354 ~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~ 426 (453)
.-+...++-..|..+|+....+ +..+ ..+|..+|.--..-|+...+..+=+.|.+ +.|-..+...+.+-|
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry 545 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRY 545 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHH
Confidence 5666778888999999865543 1112 45788888888888888888887777763 355555555554444
No 204
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.62 E-value=0.55 Score=43.02 Aligned_cols=81 Identities=16% Similarity=0.063 Sum_probs=43.5
Q ss_pred hHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcC---CCcChhhHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCCHH
Q 039177 169 GKTCSLILSSVCEQRDLSSDELLGFVQEMKKLG---FCFGMVDYTNVIRSLVK---KEKVFDALGILNQMKSDGIKPDIV 242 (453)
Q Consensus 169 ~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 242 (453)
..+...++-+|....++ +...++.+.+...- +.-+..+-....-++.+ .|+.++|++++..+....-.++..
T Consensus 141 ~div~~lllSyRdiqdy--damI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDY--DAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred hhHHHHHHHHhhhhhhH--HHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 33445555566666666 66666666665541 11122222334444445 666777777776655444455666
Q ss_pred HHHHHHHHH
Q 039177 243 CYTMVLNGV 251 (453)
Q Consensus 243 ~~~~ll~~~ 251 (453)
+|..+.+.|
T Consensus 219 ~~gL~GRIy 227 (374)
T PF13281_consen 219 TLGLLGRIY 227 (374)
T ss_pred HHHHHHHHH
Confidence 666555544
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.62 E-value=0.054 Score=47.43 Aligned_cols=94 Identities=10% Similarity=-0.012 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHH
Q 039177 243 CYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDV----YTYNVYINGLCKQNNVEAGIKMIACMEELGSKPD----VITY 314 (453)
Q Consensus 243 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~ 314 (453)
.|...+..+.+.|++++|...|+.+++.. |+. ..+-.+...|...|++++|...|+.+.+.- |+ ...+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y--P~s~~~~dAl 220 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY--PKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhHHH
Confidence 34444444455567777777777766643 332 345556666667777777777777666532 22 2234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 315 NTLLQALCKVRELNRLRELVKEMKWK 340 (453)
Q Consensus 315 ~~li~~~~~~~~~~~a~~~~~~~~~~ 340 (453)
-.+...+...|+.++|..+|+.+.+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44455566667777777777766665
No 206
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.59 E-value=0.53 Score=42.56 Aligned_cols=111 Identities=18% Similarity=0.178 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 039177 242 VCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQAL 321 (453)
Q Consensus 242 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 321 (453)
.+.+..|.-+...|+...|.++-.+.. .|+...|-..+.+++..+++++..++-.. +-++.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 345556667777888888888776663 37888888888999999998877765432 12446788888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039177 322 CKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEA 372 (453)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 372 (453)
.+.|+..+|..+...+ .+..-+..|.++|++.+|.+.--+.
T Consensus 248 ~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 8888888888877651 1245677888888888887765443
No 207
>PRK15331 chaperone protein SicA; Provisional
Probab=96.59 E-value=0.1 Score=41.26 Aligned_cols=87 Identities=6% Similarity=-0.137 Sum_probs=53.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 039177 286 LCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEA 365 (453)
Q Consensus 286 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 365 (453)
+...|++++|..+|..+...+.. +..-+..|..+|-..+++++|...|......+.. |+..+--...+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 45667777777777766654432 4445556666666667777777777665554332 333344556666667777777
Q ss_pred HHHHHHHHH
Q 039177 366 CGLLEEALN 374 (453)
Q Consensus 366 ~~~~~~m~~ 374 (453)
...|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 777766655
No 208
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.35 Score=42.26 Aligned_cols=102 Identities=14% Similarity=0.077 Sum_probs=78.5
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCcCHHHH
Q 039177 273 VPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKV---RELNRLRELVKEMKWKGIVLNLQTY 349 (453)
Q Consensus 273 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~~~~p~~~~~ 349 (453)
+-|...|-.|..+|...|+.+.|..-|....+.. .++...+..+..++... ....++..+|+++++.+.. |..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 4578889999999999999999999998887743 23555666666655433 2356788899999888666 77777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039177 350 SIMIDGLASKGDIIEACGLLEEALNKG 376 (453)
Q Consensus 350 ~~li~~~~~~g~~~~A~~~~~~m~~~~ 376 (453)
..|...+...|++.+|...|+.|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 888888889999999999999998764
No 209
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.51 E-value=0.16 Score=47.11 Aligned_cols=65 Identities=8% Similarity=-0.019 Sum_probs=54.7
Q ss_pred CCChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHhhcc
Q 039177 77 EPPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPE---FIFIDLIKTYADAHRFQDSVNLFYKIP 143 (453)
Q Consensus 77 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~ 143 (453)
+.+...+..+..+|.+.|++++|+..|+...+.. +.+. ..|..+..+|...|++++|+..+++..
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3467788889999999999999999999998773 2233 469999999999999999999988743
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.40 E-value=0.028 Score=38.22 Aligned_cols=54 Identities=17% Similarity=0.112 Sum_probs=28.8
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 215 SLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLV 269 (453)
Q Consensus 215 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 269 (453)
.|.+.+++++|+++++.+...++. +...|.....++.+.|++++|.+.|+...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 445555555555555555554333 444455555555555555555555555554
No 211
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.29 E-value=0.22 Score=44.39 Aligned_cols=129 Identities=12% Similarity=0.204 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCC-
Q 039177 257 YVKAEELFDELLVLGLVPDVYTYNVYINGLCK--QN----NVEAGIKMIACMEELGS---KPDVITYNTLLQALCKVRE- 326 (453)
Q Consensus 257 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~~----~~~~a~~~~~~m~~~~~---~p~~~~~~~li~~~~~~~~- 326 (453)
+++...+++.|.+.|+.-+..+|-+....... .. ....+..+|+.|++.-. .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44566777888888887777666553333222 22 34567788888887542 2344556666544 3333
Q ss_pred ---HHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHh-cCC--HHHHHHHHHHHHHCCCCCChhhHHHH
Q 039177 327 ---LNRLRELVKEMKWKGIVLNLQ-TYSIMIDGLAS-KGD--IIEACGLLEEALNKGLCTQSSMFDET 387 (453)
Q Consensus 327 ---~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~-~g~--~~~A~~~~~~m~~~~~~~~~~~~~~l 387 (453)
.+.++.+|+.+.+.|+..+-. -+.+-|-++.. ... ...+.++++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 345677777777766543322 22222222222 111 34677778888888877776665544
No 212
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.22 E-value=0.025 Score=38.45 Aligned_cols=53 Identities=17% Similarity=0.046 Sum_probs=22.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 321 LCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALN 374 (453)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 374 (453)
|.+.+++++|.++++.+.+.++. +...|.....++.+.|++++|.+.|+...+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34444444444444444444333 333444444444444444444444444443
No 213
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.20 E-value=0.057 Score=51.62 Aligned_cols=83 Identities=13% Similarity=0.099 Sum_probs=46.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh-----------hH
Q 039177 211 NVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVY-----------TY 279 (453)
Q Consensus 211 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-----------~~ 279 (453)
.+..-+.+...+..|-++|..|-+. ..++......+++.+|..+-+...+. .+|+. -|
T Consensus 752 ~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrF 820 (1081)
T KOG1538|consen 752 LCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRF 820 (1081)
T ss_pred HHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhH
Confidence 3333344445555666666655421 24555666667777777666655442 23322 12
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 280 NVYINGLCKQNNVEAGIKMIACMEE 304 (453)
Q Consensus 280 ~~li~~~~~~~~~~~a~~~~~~m~~ 304 (453)
.-.-.+|.+.|+-.+|.++++++..
T Consensus 821 eEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 821 EEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHHHHHHHhcchHHHHHHHHHhhh
Confidence 3334556677777777777777654
No 214
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.18 E-value=2 Score=44.77 Aligned_cols=251 Identities=15% Similarity=0.145 Sum_probs=121.7
Q ss_pred CCCHHHHHHHHHHHHhcC--ChhHHHHHHhhcccCC-CCcHHHHHHHHHHHHHCCCccChHhHHHHHHHH--------Hh
Q 039177 113 ETPEFIFIDLIKTYADAH--RFQDSVNLFYKIPKFR-INRVGFAIEILNCMINDGFCVDGKTCSLILSSV--------CE 181 (453)
Q Consensus 113 ~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~--------~~ 181 (453)
.|+ .-...+|.+|++.+ .++.|+....++.... ....+++++.+-.+. +....|+..|..| ++
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~~~~ad~al~hll~Lv-----dvn~lfn~ALgtYDl~Lal~VAq 861 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQLAQVAVSADEALKHLLFLV-----DVNELFNSALGTYDLDLALLVAQ 861 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhc-----cHHHHHHhhhcccchHHHHHHHH
Confidence 444 55667888888887 6777777766655311 233344444433332 2233444443332 11
Q ss_pred cCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 039177 182 QRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAE 261 (453)
Q Consensus 182 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 261 (453)
..+.++.+-+-+++++.+. +++..- -.|+.| .+++++|+.-+.++ +...|.-.++.--+.|.+.+|+
T Consensus 862 ~SqkDPkEyLP~L~el~~m--~~~~rk--F~ID~~--L~ry~~AL~hLs~~-------~~~~~~e~~n~I~kh~Ly~~aL 928 (1265)
T KOG1920|consen 862 KSQKDPKEYLPFLNELKKM--ETLLRK--FKIDDY--LKRYEDALSHLSEC-------GETYFPECKNYIKKHGLYDEAL 928 (1265)
T ss_pred HhccChHHHHHHHHHHhhc--hhhhhh--eeHHHH--HHHHHHHHHHHHHc-------CccccHHHHHHHHhcccchhhh
Confidence 1111223444444443321 011000 011111 12334444333333 1223334444444555555555
Q ss_pred HHHHHHHHCCCCCChhhHHHHHH----HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039177 262 ELFDELLVLGLVPDVYTYNVYIN----GLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEM 337 (453)
Q Consensus 262 ~~~~~m~~~g~~~~~~~~~~li~----~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 337 (453)
.++ .|+...+..+.. -+.....+++|--.|+..-+ ..-.+.+|-.+|+|.+|..+..++
T Consensus 929 ~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql 991 (1265)
T KOG1920|consen 929 ALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQL 991 (1265)
T ss_pred hee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhh
Confidence 444 244444433333 33345556666555554432 123456777777777777777665
Q ss_pred HHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHh
Q 039177 338 KWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMA 408 (453)
Q Consensus 338 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (453)
....-. -..+-..|+.-+...++.-+|-++..+.... +...+..|++...+++|..+...-.
T Consensus 992 ~~~~de-~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 992 SEGKDE-LVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred cCCHHH-HHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 443111 1112255666777778887777777766432 2223556667777777777665543
No 215
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.15 E-value=0.053 Score=46.48 Aligned_cols=102 Identities=17% Similarity=0.134 Sum_probs=67.3
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC----------------HHHHH
Q 039177 238 KPDIVCYTMVLNGVIVQ-----EDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNN----------------VEAGI 296 (453)
Q Consensus 238 ~~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~----------------~~~a~ 296 (453)
+.|..+|-..+..+... +.++-....++.|.+.|+..|..+|+.|++.+=+-.- -+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 44777777777777643 5666677777888888888888888888887654321 23456
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 039177 297 KMIACMEELGSKPDVITYNTLLQALCKVRE-LNRLRELVKEMKW 339 (453)
Q Consensus 297 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~ 339 (453)
+++++|...|+.||..+-..|++++++.+- ..+..++.-.|.+
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 666777777777777777777777766554 2344444444444
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.09 E-value=0.022 Score=39.40 Aligned_cols=60 Identities=17% Similarity=0.123 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-cC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039177 313 TYNTLLQALCKVRELNRLRELVKEMKWK----GIV-LN-LQTYSIMIDGLASKGDIIEACGLLEEA 372 (453)
Q Consensus 313 ~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 372 (453)
+|+.+...|...|++++|+..|++..+. |.. |+ ..++..+..+|...|++++|++.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444445555555555555555544332 111 11 233444444444444444444444443
No 217
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.09 E-value=0.5 Score=36.98 Aligned_cols=125 Identities=19% Similarity=0.187 Sum_probs=65.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 039177 280 NVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASK 359 (453)
Q Consensus 280 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 359 (453)
..++..+.+.+........++.+...+. .+....+.++..|++.+. .+....+.. . .+......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHHHc
Confidence 4455555556666666666666665542 455566666666665432 333333331 1 1222334456666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhC-CCHHHHHHHHHHHhhCCCCCCHHHHHHHHhchh
Q 039177 360 GDIIEACGLLEEALNKGLCTQSSMFDETICGLCQR-GLVRKALELLKQMADKDVSPGARVWEALLLSSV 427 (453)
Q Consensus 360 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~ 427 (453)
+.++++.-++.++.. |...+..+... ++++.|.+++.+- -+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 666666666655421 22223333333 6667776666652 14456666665543
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.02 E-value=0.029 Score=38.74 Aligned_cols=61 Identities=20% Similarity=0.182 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCC-hhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 039177 347 QTYSIMIDGLASKGDIIEACGLLEEALNK----GL-CTQ-SSMFDETICGLCQRGLVRKALELLKQM 407 (453)
Q Consensus 347 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (453)
.+++.+...|...|++++|+..|++..+. |- .|+ ..++..+...|...|++++|++++++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555555555555555555555555432 10 111 234455555555555555555555554
No 219
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.98 E-value=0.63 Score=37.28 Aligned_cols=125 Identities=19% Similarity=0.132 Sum_probs=68.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHH
Q 039177 111 NFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDEL 190 (453)
Q Consensus 111 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a 190 (453)
+++++..++..+++.+.+.|++..-.. ++..++-+|.......+-.+.... ..+
T Consensus 24 ~i~~~~~L~~lli~lLi~~~~~~~L~q----------------------llq~~Vi~DSk~lA~~LLs~~~~~----~~~ 77 (167)
T PF07035_consen 24 NIPVQHELYELLIDLLIRNGQFSQLHQ----------------------LLQYHVIPDSKPLACQLLSLGNQY----PPA 77 (167)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHH----------------------HHhhcccCCcHHHHHHHHHhHccC----hHH
Confidence 566777777777777777776555443 333455555555544443333221 222
Q ss_pred HHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 191 LGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLV 269 (453)
Q Consensus 191 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 269 (453)
.++=-+|.+.= ...+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+|+-+.+
T Consensus 78 ~Ql~lDMLkRL----~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 78 YQLGLDMLKRL----GTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHHHHh----hhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22222232220 124456667777788888888777665332 222334566777777776666666655554
No 220
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.25 Score=44.93 Aligned_cols=83 Identities=12% Similarity=-0.003 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHhchh
Q 039177 348 TYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADKDVSPGARVWEALLLSSV 427 (453)
Q Consensus 348 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~ 427 (453)
++..|..+|.+.+++..|++..++..+.+ ..|....-.=-.+|...|+++.|...|+++. .+.|+......=|..|.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~--k~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKAL--KLEPSNKAARAELIKLK 335 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHH--HhCCCcHHHHHHHHHHH
Confidence 45556666666666666666666666654 3333333333456666666666666666666 44666555555555554
Q ss_pred cchhhH
Q 039177 428 SKLDFV 433 (453)
Q Consensus 428 ~~~~~~ 433 (453)
.+....
T Consensus 336 ~k~~~~ 341 (397)
T KOG0543|consen 336 QKIREY 341 (397)
T ss_pred HHHHHH
Confidence 444333
No 221
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.91 E-value=0.51 Score=35.68 Aligned_cols=136 Identities=14% Similarity=0.205 Sum_probs=80.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHH
Q 039177 253 VQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVIT---YNTLLQALCKVRELNR 329 (453)
Q Consensus 253 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~~~~~~ 329 (453)
-.|..++..++..+...+ .+..-+|.+|--....-+-+-..++++.+-+. .|... .-.++..|++.|.
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis~C~NlKrVi~C~~~~n~--- 84 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDISKCGNLKRVIECYAKRNK--- 84 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GGG-S-THHHHHHHHHTT----
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCchhhcchHHHHHHHHHhcc---
Confidence 457777888888877763 45666666666555555556666666655442 23321 1223333333332
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 039177 330 LRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMAD 409 (453)
Q Consensus 330 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (453)
+..-....++.....|+-|.-.++..++.+. -.+++...-.+..+|.+.|+..++.+++.+..+
T Consensus 85 ---------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 85 ---------------LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp -----------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ---------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3334455667777888888888888887653 367777778888899999999999999998888
Q ss_pred CCCC
Q 039177 410 KDVS 413 (453)
Q Consensus 410 ~~~~ 413 (453)
+|++
T Consensus 149 kG~k 152 (161)
T PF09205_consen 149 KGLK 152 (161)
T ss_dssp TT-H
T ss_pred hchH
Confidence 8864
No 222
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.89 E-value=0.62 Score=36.44 Aligned_cols=85 Identities=12% Similarity=0.022 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 039177 210 TNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQ 289 (453)
Q Consensus 210 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 289 (453)
..++..+.+.+.......+++.+...+. .+...++.++..|++.. .......+.. ..+......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 3555556666666666666666666553 45556666666666543 2222233321 12334444455666666
Q ss_pred CCHHHHHHHHHHH
Q 039177 290 NNVEAGIKMIACM 302 (453)
Q Consensus 290 ~~~~~a~~~~~~m 302 (453)
+.++++..++..+
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 6666666655554
No 223
>PRK15331 chaperone protein SicA; Provisional
Probab=95.89 E-value=0.55 Score=37.30 Aligned_cols=92 Identities=8% Similarity=-0.045 Sum_probs=59.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 039177 211 NVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQN 290 (453)
Q Consensus 211 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 290 (453)
...--+-..|++++|..+|+-+...++- +..-|..|..++-..+++++|...|......+. -|...+--...+|...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhC
Confidence 3344455677788888877777765444 555566666677777777777777776654432 33444444566777777
Q ss_pred CHHHHHHHHHHHHH
Q 039177 291 NVEAGIKMIACMEE 304 (453)
Q Consensus 291 ~~~~a~~~~~~m~~ 304 (453)
+.+.|...|+...+
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 77777777777766
No 224
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=1.1 Score=39.15 Aligned_cols=145 Identities=13% Similarity=0.105 Sum_probs=91.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 039177 213 IRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNV 292 (453)
Q Consensus 213 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~ 292 (453)
.......|++.+|...|......... +...--.+..+|...|+.+.|..++..+...--.........-|..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34556778888888888888776444 44555677888888888888888888775432222222323334445555555
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHhcCCH
Q 039177 293 EAGIKMIACMEELGSKP-DVITYNTLLQALCKVRELNRLRELVKEMKWK--GIVLNLQTYSIMIDGLASKGDI 362 (453)
Q Consensus 293 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~ 362 (453)
.+..++-...-. .| |...--.+...+...|+.+.|.+.+-.+.++ |.. |...-..|+..+.-.|..
T Consensus 220 ~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 220 PEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPA 288 (304)
T ss_pred CCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCC
Confidence 555555555544 25 5556667777788888888887776666655 333 445556666666655533
No 225
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.86 E-value=0.25 Score=42.57 Aligned_cols=89 Identities=18% Similarity=0.288 Sum_probs=61.2
Q ss_pred CCChhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------------HHHHH
Q 039177 273 VPDVYTYNVYINGLCK-----QNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRE----------------LNRLR 331 (453)
Q Consensus 273 ~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~----------------~~~a~ 331 (453)
+.|..+|-+.+..+.. .++++-....++.|.+.|+..|..+|+.|++.+-+-.- -+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 4577788888877754 46788888888999999999999999999998765321 22345
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 039177 332 ELVKEMKWKGIVLNLQTYSIMIDGLASKGD 361 (453)
Q Consensus 332 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 361 (453)
+++++|...|+.||-.+-..|+.++.+.|-
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 555555555555555555555555555443
No 226
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.77 E-value=2.3 Score=42.04 Aligned_cols=308 Identities=16% Similarity=0.162 Sum_probs=158.3
Q ss_pred hcCCCCChhhHHH-----HHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCh--hHHHH-HHhhccc
Q 039177 73 IYNCEPPPEAYHF-----VIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRF--QDSVN-LFYKIPK 144 (453)
Q Consensus 73 ~~~~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~-~~~~~~~ 144 (453)
..|++.+..-|.. +|+-+...+.+..|.++-.++....+ ....++.....-+.+..+. +++++ +=+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~--~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPES--QGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccc--cccHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 4577777666654 67777888888888888877754321 1256777777777776432 22222 2222222
Q ss_pred --CC-------------CCcHHHHHHHHHHHHHCCCc----cChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcC----
Q 039177 145 --FR-------------INRVGFAIEILNCMINDGFC----VDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLG---- 201 (453)
Q Consensus 145 --~~-------------~~~~~~a~~~~~~m~~~~~~----p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g---- 201 (453)
.. .|+.+.|..+++.=...+.. .+..-+...+.-+.+.|+. +....++-.+...-
T Consensus 503 ~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~--~Li~~Vllhlk~~~~~s~ 580 (829)
T KOG2280|consen 503 KLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDT--DLIIQVLLHLKNKLNRSS 580 (829)
T ss_pred cCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHH
Confidence 11 56666666665432222211 1333456666777777777 55665555444321
Q ss_pred -------CCcChhhHHHHHH--------HHHhcCChhHHHHHHHHHH------hCCCCCCHHHHHHHHHHHHhcCCHHH-
Q 039177 202 -------FCFGMVDYTNVIR--------SLVKKEKVFDALGILNQMK------SDGIKPDIVCYTMVLNGVIVQEDYVK- 259 (453)
Q Consensus 202 -------~~~~~~~~~~li~--------~~~~~g~~~~a~~~~~~m~------~~~~~~~~~~~~~ll~~~~~~g~~~~- 259 (453)
.+.....|..+++ .+.+.++-..+...|..=. ..+..|+ .....+.|.+.....-
T Consensus 581 l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e 657 (829)
T KOG2280|consen 581 LFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFE 657 (829)
T ss_pred HHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhH
Confidence 1111122222222 0111111111111111000 0111222 2223334443332111
Q ss_pred ---------HHHHHHHHH-HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 039177 260 ---------AEELFDELL-VLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNR 329 (453)
Q Consensus 260 ---------a~~~~~~m~-~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 329 (453)
-+.+.+.+. +.|......+.+--+.-+...|+..+|.++-.+.+- ||...|-.=+.+++..+++++
T Consensus 658 ~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki----pdKr~~wLk~~aLa~~~kwee 733 (829)
T KOG2280|consen 658 AKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI----PDKRLWWLKLTALADIKKWEE 733 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC----cchhhHHHHHHHHHhhhhHHH
Confidence 111111111 123233344445555566677777777777666653 677777777788888888777
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 039177 330 LRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQ 406 (453)
Q Consensus 330 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 406 (453)
-+++-+.... +.-|.-++.+|.+.|+.++|.+++.+.. | .. ....+|.+.|++.+|.++--+
T Consensus 734 LekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~--~---l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 734 LEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVG--G---LQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhccC--C---hH----HHHHHHHHhccHHHHHHHHHH
Confidence 6666544332 3345557777888888888888776542 1 11 346677788888777765444
No 227
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.74 E-value=0.74 Score=45.84 Aligned_cols=51 Identities=14% Similarity=0.295 Sum_probs=23.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 039177 283 INGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELV 334 (453)
Q Consensus 283 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 334 (453)
|.-|....++..-...++.+.+.|+. +...-+.|+.+|.+.++.++..++.
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI 454 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFI 454 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHH
Confidence 33344444444444455555555443 3333344555555555554444443
No 228
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.64 E-value=2.6 Score=41.72 Aligned_cols=89 Identities=10% Similarity=0.107 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 039177 310 DVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETIC 389 (453)
Q Consensus 310 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 389 (453)
..-+.+--+.-+...|+..+|.++-.+.+ .||-..|-.=+.+++..+++++-.++-+.++. +.-|.-.+.
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe 752 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVE 752 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHH
Confidence 33455666677788889888888766544 45888898889999999999987777655432 344777789
Q ss_pred HHHhCCCHHHHHHHHHHHh
Q 039177 390 GLCQRGLVRKALELLKQMA 408 (453)
Q Consensus 390 ~~~~~g~~~~A~~~~~~m~ 408 (453)
+|.+.|+.++|..++.+..
T Consensus 753 ~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred HHHhcccHHHHhhhhhccC
Confidence 9999999999999998874
No 229
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.61 E-value=0.7 Score=34.99 Aligned_cols=140 Identities=22% Similarity=0.245 Sum_probs=84.5
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 039177 216 LVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAG 295 (453)
Q Consensus 216 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a 295 (453)
..-.|.+++..++..+.... .+..-+|.+|--....-+-+-..++++.. |-..|.... |++...
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDis~C----------~NlKrV 75 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDISKC----------GNLKRV 75 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-GGG-----------S-THHH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHH---hhhcCchhh----------cchHHH
Confidence 34468888999999888764 26667777776666555555555555554 323444432 333333
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 296 IKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNK 375 (453)
Q Consensus 296 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 375 (453)
...+-.+- .+.......+......|.-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++.+.-++
T Consensus 76 i~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 76 IECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 33222211 24455667778888889999999999888763 3557778888889999999999999999998888
Q ss_pred CC
Q 039177 376 GL 377 (453)
Q Consensus 376 ~~ 377 (453)
|+
T Consensus 150 G~ 151 (161)
T PF09205_consen 150 GL 151 (161)
T ss_dssp T-
T ss_pred ch
Confidence 85
No 230
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.60 E-value=1.3 Score=37.96 Aligned_cols=80 Identities=15% Similarity=0.100 Sum_probs=51.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 039177 208 DYTNVIRSLVKKEKVFDALGILNQMKSDGI--KPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYING 285 (453)
Q Consensus 208 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 285 (453)
.+-.-+..-.+.|++++|.+.|+.+....+ +-...+.-.++-++.+.+++++|+..+++....-.......|...|.+
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg 115 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG 115 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence 333444455677888888888888876522 113445556667778888888888888888775433344445555555
Q ss_pred HH
Q 039177 286 LC 287 (453)
Q Consensus 286 ~~ 287 (453)
.+
T Consensus 116 Ls 117 (254)
T COG4105 116 LS 117 (254)
T ss_pred HH
Confidence 44
No 231
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.59 E-value=0.32 Score=45.27 Aligned_cols=64 Identities=11% Similarity=0.043 Sum_probs=42.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 275 DVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDV----ITYNTLLQALCKVRELNRLRELVKEMKWK 340 (453)
Q Consensus 275 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 340 (453)
+...++.+..+|.+.|++++|+..|+..++. .|+. .+|..+..+|...|++++|+..++..++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556666666777777777777777776663 3443 24666677777777777777777766664
No 232
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.56 E-value=0.14 Score=46.39 Aligned_cols=264 Identities=14% Similarity=0.018 Sum_probs=153.1
Q ss_pred HHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCC---ccChHhHHHHHHHHHhcCCCChHHHHHHHHHH--HHc
Q 039177 126 YADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGF---CVDGKTCSLILSSVCEQRDLSSDELLGFVQEM--KKL 200 (453)
Q Consensus 126 ~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~---~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~--~~~ 200 (453)
+++.|+....+.+|+. .++.|- ..=...|..|..+|.-.++. ++|++++..= ...
T Consensus 27 Lck~gdcraGv~ff~a------------------A~qvGTeDl~tLSAIYsQLGNAyfyL~DY--~kAl~yH~hDltlar 86 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKA------------------ALQVGTEDLSTLSAIYSQLGNAYFYLKDY--EKALKYHTHDLTLAR 86 (639)
T ss_pred HHhccchhhhHHHHHH------------------HHHhcchHHHHHHHHHHHhcchhhhHhhH--HHHHhhhhhhHHHHH
Confidence 5677777777777666 333331 11123566677777777777 7888765321 111
Q ss_pred --CCC-cChhhHHHHHHHHHhcCChhHHHHHHHHH----HhCCCC-CCHHHHHHHHHHHHhcCC----------------
Q 039177 201 --GFC-FGMVDYTNVIRSLVKKEKVFDALGILNQM----KSDGIK-PDIVCYTMVLNGVIVQED---------------- 256 (453)
Q Consensus 201 --g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m----~~~~~~-~~~~~~~~ll~~~~~~g~---------------- 256 (453)
|-+ -...+...|.+.+--.|.+++|+..-.+- .+.|-+ .....+..+...|...|+
T Consensus 87 ~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~e 166 (639)
T KOG1130|consen 87 LLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAE 166 (639)
T ss_pred HhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHH
Confidence 111 11222334445555566676665432221 121111 123344456666655443
Q ss_pred ----HHHHHHHHHHHHH----CCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCC-CHHHHHHHHHHHH
Q 039177 257 ----YVKAEELFDELLV----LGL-VPDVYTYNVYINGLCKQNNVEAGIKMIACME----ELGSKP-DVITYNTLLQALC 322 (453)
Q Consensus 257 ----~~~a~~~~~~m~~----~g~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~~p-~~~~~~~li~~~~ 322 (453)
++.|.++|.+-++ .|- -.--..|..+-+.|.-.|+++.|+...+.=. +.|-+. ....++.+.++++
T Consensus 167 v~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hi 246 (639)
T KOG1130|consen 167 VTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHI 246 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhh
Confidence 2344444443221 110 0122345666666777889999988776432 233221 2346888889999
Q ss_pred hcCCHHHHHHHHHHHHH----CC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCChhhHHHHHHHHH
Q 039177 323 KVRELNRLRELVKEMKW----KG-IVLNLQTYSIMIDGLASKGDIIEACGLLEEALN----K-GLCTQSSMFDETICGLC 392 (453)
Q Consensus 323 ~~~~~~~a~~~~~~~~~----~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-~~~~~~~~~~~li~~~~ 392 (453)
-.|+++.|.+.|+.-.. .| -.....++-+|..+|.-..++++|+.++++-.. . +..-....+.+|..+|.
T Consensus 247 flg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~ 326 (639)
T KOG1130|consen 247 FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFN 326 (639)
T ss_pred hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 99999999988875433 22 122445677788888888899999988875432 1 23345567888899999
Q ss_pred hCCCHHHHHHHHHHHhh
Q 039177 393 QRGLVRKALELLKQMAD 409 (453)
Q Consensus 393 ~~g~~~~A~~~~~~m~~ 409 (453)
..|..++|+.+.+.-++
T Consensus 327 alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 327 ALGEHRKALYFAELHLR 343 (639)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 99999999887766543
No 233
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.53 E-value=2 Score=39.84 Aligned_cols=323 Identities=14% Similarity=0.129 Sum_probs=175.5
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHcCCC----CCCHHHHHHHHHHHHhcCCh--------hHHHHHHhh-------ccc
Q 039177 84 HFVIKTLAENSQFCDISSVLDHIEKRENF----ETPEFIFIDLIKTYADAHRF--------QDSVNLFYK-------IPK 144 (453)
Q Consensus 84 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~-------~~~ 144 (453)
+..+..+...|++.++..+++++... -+ .-+...|+.++-++++.=-. +-+...|+. |..
T Consensus 132 ~i~a~sLIe~g~f~EgR~iLn~i~~~-llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~ 210 (549)
T PF07079_consen 132 EIEAHSLIETGRFSEGRAILNRIIER-LLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHA 210 (549)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHH-HhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHH
Confidence 45677888999999999999988765 23 36788888877776654211 111122221 111
Q ss_pred CC-------------------------CCcHHHHHHHHHHHHHCCCccChHh-HHHHHHHHHhcCCCChHHHHHHHHHHH
Q 039177 145 FR-------------------------INRVGFAIEILNCMINDGFCVDGKT-CSLILSSVCEQRDLSSDELLGFVQEMK 198 (453)
Q Consensus 145 ~~-------------------------~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~~~a~~~~~~~~ 198 (453)
.+ ..+..--.+++....+.-+.|+... ...+...... +. +++..+-+.+.
T Consensus 211 ~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~--e~~~~~ce~ia 286 (549)
T PF07079_consen 211 FDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DP--EQVGHFCEAIA 286 (549)
T ss_pred HhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--Ch--HHHHHHHHHHH
Confidence 11 1112222333333334444555332 2222322222 22 44555444443
Q ss_pred HcCCCc----ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH-------HHHHHHH----hcCCHHHHHHH
Q 039177 199 KLGFCF----GMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYT-------MVLNGVI----VQEDYVKAEEL 263 (453)
Q Consensus 199 ~~g~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-------~ll~~~~----~~g~~~~a~~~ 263 (453)
...+.+ =+.++..++...++.++...|.+.+.-+....+ +...-. .+-+..+ ...+...-+.+
T Consensus 287 ~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp--~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~l 364 (549)
T PF07079_consen 287 SSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDP--RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNL 364 (549)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC--cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHH
Confidence 332111 234577777777778888888777777665422 211111 1111121 11122333445
Q ss_pred HHHHHHCCCCCChhhHHHHHHH---HHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHh---cCCHHHHHH
Q 039177 264 FDELLVLGLVPDVYTYNVYING---LCKQNN-VEAGIKMIACMEELGSKPDVITYNTLL----QALCK---VRELNRLRE 332 (453)
Q Consensus 264 ~~~m~~~g~~~~~~~~~~li~~---~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~li----~~~~~---~~~~~~a~~ 332 (453)
|+.....++.. .....-++.+ +-+.|. -++|.++++.+.+-. .-|..+-|.+. .+|.+ ...+..-..
T Consensus 365 we~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlk 442 (549)
T PF07079_consen 365 WEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLK 442 (549)
T ss_pred HHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 55544433211 1112222222 344554 788999998888732 12333333332 33432 234455555
Q ss_pred HHHHHHHCCCCc----CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 039177 333 LVKEMKWKGIVL----NLQTYSIMIDG--LASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQ 406 (453)
Q Consensus 333 ~~~~~~~~~~~p----~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 406 (453)
+-+-+.+.|+.| +...-|.|-++ +...|++.++.-.-....+ +.|++.+|..+--++....++++|..++..
T Consensus 443 Le~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 443 LEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 555666677765 33455555554 4567999988777666654 578999999888888888999999999987
Q ss_pred HhhCCCCCCHHHHHHH
Q 039177 407 MADKDVSPGARVWEAL 422 (453)
Q Consensus 407 m~~~~~~p~~~~~~~l 422 (453)
+ +||..++.+=
T Consensus 521 L-----P~n~~~~dsk 531 (549)
T PF07079_consen 521 L-----PPNERMRDSK 531 (549)
T ss_pred C-----CCchhhHHHH
Confidence 5 6777777754
No 234
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.51 E-value=1 Score=36.37 Aligned_cols=101 Identities=9% Similarity=0.065 Sum_probs=49.1
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChhhHHHH
Q 039177 204 FGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGL-VPDVYTYNVY 282 (453)
Q Consensus 204 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~l 282 (453)
|++..--.|..+..+.|+..+|...|++...--..-|....-.+.++....+++..|...++++.+... .-+..+--.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 444444455555555555555555555555433333444444555555555555555555555544220 0011222234
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 039177 283 INGLCKQNNVEAGIKMIACMEE 304 (453)
Q Consensus 283 i~~~~~~~~~~~a~~~~~~m~~ 304 (453)
...+...|...+|+.-|+....
T Consensus 167 aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHH
Confidence 4445555555555555555554
No 235
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.51 E-value=1.9 Score=39.25 Aligned_cols=264 Identities=12% Similarity=-0.002 Sum_probs=144.2
Q ss_pred CCCCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHH--hcCCCChHHHHHHHHHHHHcCCCcChh--hHHHHHHHHHhcC
Q 039177 145 FRINRVGFAIEILNCMINDGFCVDGKTCSLILSSVC--EQRDLSSDELLGFVQEMKKLGFCFGMV--DYTNVIRSLVKKE 220 (453)
Q Consensus 145 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g 220 (453)
.+.|+-..|.++-.+..+ -+.-|..-...+|.+-. -.|+. +.+.+-|+.|... |... -...|.-..-+.|
T Consensus 95 agAGda~lARkmt~~~~~-llssDqepLIhlLeAQaal~eG~~--~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~G 168 (531)
T COG3898 95 AGAGDASLARKMTARASK-LLSSDQEPLIHLLEAQAALLEGDY--EDARKKFEAMLDD---PETRLLGLRGLYLEAQRLG 168 (531)
T ss_pred hccCchHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHhcCch--HHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcc
Confidence 335666666665544432 13445555555555433 33444 7777777777653 2211 1233333334567
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhh--HHHHHHHHH---hcCCHHH
Q 039177 221 KVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLG-LVPDVYT--YNVYINGLC---KQNNVEA 294 (453)
Q Consensus 221 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~--~~~li~~~~---~~~~~~~ 294 (453)
..+.|..+-++.-..-.. -...+...+...|..|+++.|+++++.-.... +.++..- -..|+.+-. -..+...
T Consensus 169 areaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~ 247 (531)
T COG3898 169 AREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPAS 247 (531)
T ss_pred cHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHH
Confidence 777777776666554322 34567777777777888888887777655432 2232221 112222211 1223444
Q ss_pred HHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039177 295 GIKMIACMEELGSKPDVIT-YNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEAL 373 (453)
Q Consensus 295 a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 373 (453)
|.+.-.+..+ +.||..- -..-..++.+.|++.++-.+++.+-+..+.|+. +. +..+++.|+. +..-++...
T Consensus 248 Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~--lY~~ar~gdt--a~dRlkRa~ 319 (531)
T COG3898 248 ARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--AL--LYVRARSGDT--ALDRLKRAK 319 (531)
T ss_pred HHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HH--HHHHhcCCCc--HHHHHHHHH
Confidence 4444444443 4566542 233456788888999999998888887555543 22 2233455543 333333332
Q ss_pred HC-CCCCCh-hhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHhc
Q 039177 374 NK-GLCTQS-SMFDETICGLCQRGLVRKALELLKQMADKDVSPGARVWEALLLS 425 (453)
Q Consensus 374 ~~-~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a 425 (453)
.. .++||. ...-.+..+-...|++..|..--+... ...|....|..|-..
T Consensus 320 ~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~--r~~pres~~lLlAdI 371 (531)
T COG3898 320 KLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA--REAPRESAYLLLADI 371 (531)
T ss_pred HHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh--hhCchhhHHHHHHHH
Confidence 22 334443 334455667777888888877666665 457777777665443
No 236
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.47 E-value=0.52 Score=44.73 Aligned_cols=160 Identities=12% Similarity=0.049 Sum_probs=102.2
Q ss_pred HHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCcc
Q 039177 88 KTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCV 167 (453)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p 167 (453)
+...-.++++.+.++.+.-.--..+ +....+.++..+-+.|..+.|+.+-.+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D-------------------------- 320 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTD-------------------------- 320 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS---------------------------
T ss_pred HHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCC--------------------------
Confidence 4445568888877766521111112 245689999999999999999887543
Q ss_pred ChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 039177 168 DGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMV 247 (453)
Q Consensus 168 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 247 (453)
. ..-+....+.|++ +.|.++..+ ..+...|..|.+...+.|+++-|.+.|.+..+ |..|
T Consensus 321 -~---~~rFeLAl~lg~L--~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L 379 (443)
T PF04053_consen 321 -P---DHRFELALQLGNL--DIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGL 379 (443)
T ss_dssp -H---HHHHHHHHHCT-H--HHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHH
T ss_pred -h---HHHhHHHHhcCCH--HHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------cccc
Confidence 1 1223345567777 777765322 23677899999999999999999999987763 5667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 039177 248 LNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACM 302 (453)
Q Consensus 248 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 302 (453)
+-.|.-.|+.+...++.+.....| -++....++.-.|+.++..+++..-
T Consensus 380 ~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 380 LLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 777888899888888877776654 2556666677778888887776653
No 237
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.47 E-value=0.64 Score=42.35 Aligned_cols=270 Identities=13% Similarity=0.061 Sum_probs=143.7
Q ss_pred HHHHhcCCcchHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHC
Q 039177 88 KTLAENSQFCDISSVLDHIEKRENFETP----EFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMIND 163 (453)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 163 (453)
.-+++.|+.......|+...+. | ..| ..+|.-|-.+|.-.+++++|+++...=. ..|..+=+++
T Consensus 25 ERLck~gdcraGv~ff~aA~qv-G-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDl-------tlar~lgdkl--- 92 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQV-G-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDL-------TLARLLGDKL--- 92 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHh-c-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhH-------HHHHHhcchh---
Confidence 4588999999999999999987 3 223 3466777778888888888887653200 0000000000
Q ss_pred CCccChHhHHHHHHHHHhcCCCChHHHHHHH-H---HHHHcCCC-cChhhHHHHHHHHHhcCC-----------------
Q 039177 164 GFCVDGKTCSLILSSVCEQRDLSSDELLGFV-Q---EMKKLGFC-FGMVDYTNVIRSLVKKEK----------------- 221 (453)
Q Consensus 164 ~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~-~---~~~~~g~~-~~~~~~~~li~~~~~~g~----------------- 221 (453)
| .......|...+-..|.+ ++|.-.. . -..+.|-. .....+..+...|...|+
T Consensus 93 G---EAKssgNLGNtlKv~G~f--deA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev 167 (639)
T KOG1130|consen 93 G---EAKSSGNLGNTLKVKGAF--DEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEV 167 (639)
T ss_pred c---cccccccccchhhhhccc--chHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHH
Confidence 0 001111112222222222 2221110 0 00111100 112334444555544332
Q ss_pred ---hhHHHHHHHHHHh----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-CChhhHHHHHHHHHh
Q 039177 222 ---VFDALGILNQMKS----DGI-KPDIVCYTMVLNGVIVQEDYVKAEELFDELLV----LGLV-PDVYTYNVYINGLCK 288 (453)
Q Consensus 222 ---~~~a~~~~~~m~~----~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~----~g~~-~~~~~~~~li~~~~~ 288 (453)
++.|.++|.+=.+ .|- -.--..|..|-+.|.-.|+++.|+...+.-+. .|-. .....+..+.+++.-
T Consensus 168 ~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif 247 (639)
T KOG1130|consen 168 TSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF 247 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh
Confidence 2334444432221 110 00123455666666677888888877765432 2211 234566777788888
Q ss_pred cCCHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCcCHHHHHHHHHHHHh
Q 039177 289 QNNVEAGIKMIACMEE----LGSK-PDVITYNTLLQALCKVRELNRLRELVKEMKWK-----GIVLNLQTYSIMIDGLAS 358 (453)
Q Consensus 289 ~~~~~~a~~~~~~m~~----~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~p~~~~~~~li~~~~~ 358 (453)
.|+++.|.+.|+.-.. .|-+ ....++-+|.+.|.-..++++|+.++..-+.. ...-....|-+|..+|..
T Consensus 248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a 327 (639)
T KOG1130|consen 248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA 327 (639)
T ss_pred hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 8888888888776432 2211 12345666777777777888888777643321 112255677788888888
Q ss_pred cCCHHHHHHHHHHHHH
Q 039177 359 KGDIIEACGLLEEALN 374 (453)
Q Consensus 359 ~g~~~~A~~~~~~m~~ 374 (453)
.|..++|+.+.+.-.+
T Consensus 328 lg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 328 LGEHRKALYFAELHLR 343 (639)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 8888888877765543
No 238
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.26 E-value=2.1 Score=38.32 Aligned_cols=128 Identities=16% Similarity=0.131 Sum_probs=67.8
Q ss_pred HHHHHHHHHHCCCccChHhHHHHHHHHHh--cCCCC--hHHHHHHHHHHHHcCC---CcChhhHHHHHHHHHhcCCh---
Q 039177 153 AIEILNCMINDGFCVDGKTCSLILSSVCE--QRDLS--SDELLGFVQEMKKLGF---CFGMVDYTNVIRSLVKKEKV--- 222 (453)
Q Consensus 153 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~~~~--~~~a~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~~--- 222 (453)
.+.+++.|.+.|+.-+.++|.+.+..... ..+.+ ...+..+|+.|++... .++...+..|+.. ..+++
T Consensus 81 ~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l 158 (297)
T PF13170_consen 81 VLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEEL 158 (297)
T ss_pred HHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHH
Confidence 56678889999999888887765444433 11111 1567777788877631 2333444444433 22222
Q ss_pred -hHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCChhhHHHH
Q 039177 223 -FDALGILNQMKSDGIKPDIV--CYTMVLNGVIVQED--YVKAEELFDELLVLGLVPDVYTYNVY 282 (453)
Q Consensus 223 -~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~g~--~~~a~~~~~~m~~~g~~~~~~~~~~l 282 (453)
+.++.+|+.+.+.|+..+-. ..+.++..+..... ...+.++++.+.+.|++.....|..+
T Consensus 159 ~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 159 AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 34556666666655544322 22222222221111 23556666666666666655555544
No 239
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.10 E-value=3 Score=39.27 Aligned_cols=69 Identities=7% Similarity=0.126 Sum_probs=49.6
Q ss_pred CCChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC
Q 039177 77 EPPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFR 146 (453)
Q Consensus 77 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 146 (453)
.-|+..|...+.-|-+.+.+.....+|..|...++-.|+..++.+.-.. -....++.|+.+|-+-.+.+
T Consensus 102 ~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wef-e~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 102 NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEF-EINLNIESARALFLRGLRFN 170 (568)
T ss_pred CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHH-hhccchHHHHHHHHHHhhcC
Confidence 3489999999998888888999999999999887555555554433222 22233888888887755544
No 240
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.05 E-value=2.1 Score=41.36 Aligned_cols=163 Identities=13% Similarity=0.023 Sum_probs=103.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh------hhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHH
Q 039177 244 YTMVLNGVIVQEDYVKAEELFDELLVLGLVPDV------YTYNVYINGLCK----QNNVEAGIKMIACMEELGSKPDVIT 313 (453)
Q Consensus 244 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~------~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~ 313 (453)
+..+++...-.||-+.+++.+.+..+.+-.... -.|..++..++. ....+.|.+++..+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 345666666778888888888776553211111 223444444433 34678888999888874 477666
Q ss_pred HHHHH-HHHHhcCCHHHHHHHHHHHHHCC---CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 039177 314 YNTLL-QALCKVRELNRLRELVKEMKWKG---IVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETIC 389 (453)
Q Consensus 314 ~~~li-~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 389 (453)
|...- +.+...|++++|.+.|+...... .+.....+--+.-.+.-.+++++|...|..+.+.. ..+..+|.-+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 65443 56677889999999998765421 11233344455666777889999999999998754 233444444433
Q ss_pred -HHHhCCCH-------HHHHHHHHHHhh
Q 039177 390 -GLCQRGLV-------RKALELLKQMAD 409 (453)
Q Consensus 390 -~~~~~g~~-------~~A~~~~~~m~~ 409 (453)
++...|+. ++|.++|.+...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 34456777 888888887653
No 241
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=1.1 Score=40.93 Aligned_cols=95 Identities=15% Similarity=-0.016 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh-HHHHHHH
Q 039177 312 ITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSM-FDETICG 390 (453)
Q Consensus 312 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~li~~ 390 (453)
.++..|.-+|.+.+++..|+..-...+..+.. |+...-.=..+|...|+++.|+..|+++++. .|+... -+.|+..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 45677788888999999999988888887655 7777667778888899999999999999875 455444 3344433
Q ss_pred HHhCCC-HHHHHHHHHHHhh
Q 039177 391 LCQRGL-VRKALELLKQMAD 409 (453)
Q Consensus 391 ~~~~g~-~~~A~~~~~~m~~ 409 (453)
-.+... .++..++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 333333 3344667777764
No 242
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.98 E-value=3.3 Score=40.02 Aligned_cols=138 Identities=17% Similarity=0.117 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhc--CCCChHHHHHHHH
Q 039177 118 IFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQ--RDLSSDELLGFVQ 195 (453)
Q Consensus 118 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--~~~~~~~a~~~~~ 195 (453)
....++...+-.|+-+.+++.+....+.+ ....++..+ -.-+|..++..++.. .+.+.+.+.++++
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~--~i~~~la~L----------~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~ 257 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSE--NIRSPLAAL----------VLLWYHLVVPSFLGIDGEDVPLEEAEELLE 257 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccC--CcchHHHHH----------HHHHHHHHHHHHcCCcccCCCHHHHHHHHH
Confidence 34456666666677666666655422210 000000000 011344444444433 3334466777777
Q ss_pred HHHHcCCCcChhhHH-HHHHHHHhcCChhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 196 EMKKLGFCFGMVDYT-NVIRSLVKKEKVFDALGILNQMKSDG---IKPDIVCYTMVLNGVIVQEDYVKAEELFDELLV 269 (453)
Q Consensus 196 ~~~~~g~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 269 (453)
.+.+.- |+...|. .-.+.+...|++++|++.|++..... .......+--+.-++.-.+++++|.+.|..+.+
T Consensus 258 ~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 258 EMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 666643 4444433 23445556677777777777554210 001112222233344455566666666665555
No 243
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.81 E-value=0.93 Score=40.21 Aligned_cols=155 Identities=10% Similarity=0.035 Sum_probs=82.2
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh----hHHHHHHHHHhcCCHH
Q 039177 218 KKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVY----TYNVYINGLCKQNNVE 293 (453)
Q Consensus 218 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~----~~~~li~~~~~~~~~~ 293 (453)
-.|++.+|-..++++.+.- +.|..++.-.=.+|..+|+.+.-...+++....- .+|.. .-..+..+...+|.++
T Consensus 115 ~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccch
Confidence 3566666666666666653 3366666666677777777777776666665431 12222 2222333344667777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---cCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039177 294 AGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIV---LNLQTYSIMIDGLASKGDIIEACGLLE 370 (453)
Q Consensus 294 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~ 370 (453)
+|++.-++..+.+ ..|...-.++...+--.|++.++.++...-...--. .-...|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 7777666666543 234555556666666666777766665433221000 001111122223344466777777776
Q ss_pred HHHHC
Q 039177 371 EALNK 375 (453)
Q Consensus 371 ~m~~~ 375 (453)
.-+-+
T Consensus 272 ~ei~k 276 (491)
T KOG2610|consen 272 REIWK 276 (491)
T ss_pred HHHHH
Confidence 54433
No 244
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.77 E-value=0.37 Score=40.62 Aligned_cols=45 Identities=9% Similarity=0.005 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHhhcccCC-CCcHHHHHHHHHHH
Q 039177 116 EFIFIDLIKTYADAHRFQDSVNLFYKIPKFR-INRVGFAIEILNCM 160 (453)
Q Consensus 116 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~a~~~~~~m 160 (453)
+..++.....|..+|.++-|-..+++.-+.- ..+++.|+++|++.
T Consensus 91 vdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqra 136 (308)
T KOG1585|consen 91 VDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRA 136 (308)
T ss_pred HHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 3445555566666666655555554422211 23444444444443
No 245
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.76 E-value=0.75 Score=43.72 Aligned_cols=128 Identities=20% Similarity=0.173 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 039177 209 YTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCK 288 (453)
Q Consensus 209 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 288 (453)
.+.++..+-+.|..+.|+++..+-. .-.....+.|+++.|.++.++. .+...|..|.....+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHH
Confidence 4555555555565555555533211 1223344555555555443321 345556666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 039177 289 QNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGL 368 (453)
Q Consensus 289 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 368 (453)
.|+++.|++.|.+..+ |..|+-.|.-.|+.+...++.+.....|- ++....++.-.|++++..++
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~l 424 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDL 424 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHH
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHH
Confidence 6666666655555443 44455555555555555555555444431 23333334444555554444
Q ss_pred H
Q 039177 369 L 369 (453)
Q Consensus 369 ~ 369 (453)
+
T Consensus 425 L 425 (443)
T PF04053_consen 425 L 425 (443)
T ss_dssp H
T ss_pred H
Confidence 4
No 246
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.63 E-value=0.45 Score=41.66 Aligned_cols=62 Identities=11% Similarity=0.083 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 312 ITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALN 374 (453)
Q Consensus 312 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 374 (453)
.++..++..+...|+++.+...++++....+. +...|..++.+|.+.|+...|+..++.+.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34555666666666666666666666665544 566666666666666666666666665543
No 247
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.50 E-value=1.7 Score=33.66 Aligned_cols=74 Identities=9% Similarity=-0.004 Sum_probs=44.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 039177 320 ALCKVRELNRLRELVKEMKWKGI--VLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQ 393 (453)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 393 (453)
...+.|++++|.+.|+.+..+-+ .-....--.|+.+|.+.|++++|...+++.++........-|...+.+++.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 33566777777777777776621 113345556677777777777777777777766433333345545555443
No 248
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.48 E-value=0.7 Score=40.56 Aligned_cols=99 Identities=16% Similarity=0.184 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 039177 240 DIVCYTMVLNGVIVQEDYVKAEELFDELLVLG---LVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNT 316 (453)
Q Consensus 240 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 316 (453)
.+.+...++..-....+++.++..+-.+...- ..++. +-.+.++.+. .-+.++++.++..=++.|+-||.++++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHH
Confidence 33444444444444455555555555544321 11111 1112222222 2234566666666666666666666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 317 LLQALCKVRELNRLRELVKEMKWK 340 (453)
Q Consensus 317 li~~~~~~~~~~~a~~~~~~~~~~ 340 (453)
+|+.+.+.+++.+|.++.-.|...
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHH
Confidence 666666666666666665555444
No 249
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=4.2 Score=37.41 Aligned_cols=151 Identities=19% Similarity=0.101 Sum_probs=76.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH---H-------
Q 039177 250 GVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYING--LCKQNNVEAGIKMIACMEELGSKPDVITYNT---L------- 317 (453)
Q Consensus 250 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~---l------- 317 (453)
++...|+.++|.++--..++.. ....+...+++ +.-.++.+.+..-|.+.+..+ |+...--. .
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHH
Confidence 3445566666666655555432 12222223322 334555666666666665533 44322111 1
Q ss_pred ---HHHHHhcCCHHHHHHHHHHHHHC---CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh---HHHHH
Q 039177 318 ---LQALCKVRELNRLRELVKEMKWK---GIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSM---FDETI 388 (453)
Q Consensus 318 ---i~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~---~~~li 388 (453)
.+-..+.|++..|.+.+.+.+.. ++.|+...|........+.|+..+|+.-.++....+ ... |..-.
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD----~syikall~ra 328 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID----SSYIKALLRRA 328 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC----HHHHHHHHHHH
Confidence 12234566667777777666654 345556666666666666677777666666654432 221 11112
Q ss_pred HHHHhCCCHHHHHHHHHHHhh
Q 039177 389 CGLCQRGLVRKALELLKQMAD 409 (453)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~m~~ 409 (453)
.++.-.+++++|.+-+++..+
T Consensus 329 ~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 329 NCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 233344556666666666543
No 250
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.29 E-value=3.7 Score=36.54 Aligned_cols=62 Identities=13% Similarity=0.075 Sum_probs=31.8
Q ss_pred hHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 208 DYTNVIRSLVKKEKVF---DALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVL 270 (453)
Q Consensus 208 ~~~~li~~~~~~g~~~---~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 270 (453)
++..++.+|...+..+ +|..+++.+...... ....+-.-+..+.+.++.+.+.+++.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3555666666655544 344444444433222 2333334445555566666666666666653
No 251
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.18 E-value=0.65 Score=40.69 Aligned_cols=78 Identities=15% Similarity=0.153 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCChhhHHH
Q 039177 207 VDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLV-----LGLVPDVYTYNV 281 (453)
Q Consensus 207 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~~~ 281 (453)
.++..++..+..+|+++.+.+.++++....+- +...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 34556666666667777777777766665443 666666777777777777777766666543 455565555544
Q ss_pred HHHH
Q 039177 282 YING 285 (453)
Q Consensus 282 li~~ 285 (453)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4433
No 252
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.18 E-value=4.8 Score=37.48 Aligned_cols=147 Identities=17% Similarity=0.174 Sum_probs=107.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHH
Q 039177 240 DIVCYTMVLNGVIVQEDYVKAEELFDELLVLG-LVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVIT-YNTL 317 (453)
Q Consensus 240 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l 317 (453)
-..+|...|+...+..-++.|..+|-+..+.| +.+++..++++|..++ .|+...|.++|+.-... -||... -+-.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHH
Confidence 44567788888888888999999999998888 5678888898887655 56678888998865543 245543 3556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 039177 318 LQALCKVRELNRLRELVKEMKWKGIVLN--LQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLC 392 (453)
Q Consensus 318 i~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 392 (453)
+..+...++-..|..+|+..+.+ +.-+ ...|..+|.--..-|++..+..+=+.|.+. .|...+......-|.
T Consensus 473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 77778889999999999865544 1112 457888998888899999888888888663 555555444444444
No 253
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.16 E-value=2.4 Score=34.00 Aligned_cols=29 Identities=14% Similarity=0.140 Sum_probs=14.5
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 039177 265 DELLVLGLVPDVYTYNVYINGLCKQNNVE 293 (453)
Q Consensus 265 ~~m~~~g~~~~~~~~~~li~~~~~~~~~~ 293 (453)
+.+.+.++.|+...+..+++.+.+.|++.
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 33344455555555555555555555433
No 254
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.12 E-value=7.1 Score=39.37 Aligned_cols=179 Identities=15% Similarity=0.164 Sum_probs=114.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCccChHhHHHH----HHHHHhcCCCChHHHHHH
Q 039177 118 IFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCVDGKTCSLI----LSSVCEQRDLSSDELLGF 193 (453)
Q Consensus 118 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l----l~~~~~~~~~~~~~a~~~ 193 (453)
....-++...+...++.|+.+-.. .+. |..+...+ ..-+.+.|++ ++|...
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~---------------------~~~--d~d~~~~i~~kYgd~Ly~Kgdf--~~A~~q 390 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKS---------------------QHL--DEDTLAEIHRKYGDYLYGKGDF--DEATDQ 390 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHh---------------------cCC--CHHHHHHHHHHHHHHHHhcCCH--HHHHHH
Confidence 344455666666666666665332 222 33333333 3345577887 888876
Q ss_pred HHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 039177 194 VQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLV 273 (453)
Q Consensus 194 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 273 (453)
+-+.... +.| ..+|.-|.+...+.+-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+... .|..
T Consensus 391 YI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~ 462 (933)
T KOG2114|consen 391 YIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW 462 (933)
T ss_pred HHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce
Confidence 6443332 122 25677778888888888899999998887 66777889999999999988777665543 2211
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 274 PDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKW 339 (453)
Q Consensus 274 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 339 (453)
..-....+..+.+.+-.++|..+-..... +......++ -..+++++|++.+..+.-
T Consensus 463 --~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 463 --FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLPI 518 (933)
T ss_pred --eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCCH
Confidence 12245677777888888888766554433 344444444 345789999988876543
No 255
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.93 E-value=0.24 Score=29.63 Aligned_cols=29 Identities=10% Similarity=0.075 Sum_probs=17.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 039177 208 DYTNVIRSLVKKEKVFDALGILNQMKSDG 236 (453)
Q Consensus 208 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 236 (453)
+|..+...|.+.|++++|+++|++..+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34555566666666666666666666553
No 256
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.89 E-value=0.29 Score=29.20 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=9.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 317 LLQALCKVRELNRLRELVKEMKWK 340 (453)
Q Consensus 317 li~~~~~~~~~~~a~~~~~~~~~~ 340 (453)
+..+|.+.|++++|+++|+.+++.
T Consensus 7 la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 7 LARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 333334444444444444443333
No 257
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.71 E-value=6.5 Score=37.29 Aligned_cols=58 Identities=16% Similarity=0.080 Sum_probs=34.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039177 316 TLLQALCKVRELNRLRELVKEMKWKGIV-LNLQTYSIMIDGLASKGDIIEACGLLEEAL 373 (453)
Q Consensus 316 ~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 373 (453)
.+..++-+.|+.++|.+.+++|.+.... -+......|+.++...+.+.++..++.+-.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3444455666666666666666654222 133455666666666666666666666653
No 258
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.70 E-value=2.3 Score=32.20 Aligned_cols=92 Identities=15% Similarity=0.026 Sum_probs=59.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH---HHHHHHhcC
Q 039177 214 RSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNV---YINGLCKQN 290 (453)
Q Consensus 214 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~---li~~~~~~~ 290 (453)
-+.+..|+++.|++.|.+....-++ ....||.-..++.-.|+.++|++=+++.++..-.-+.....+ -...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 4556777888888888777665333 667777777778777888888777777665321222222222 233466677
Q ss_pred CHHHHHHHHHHHHHCC
Q 039177 291 NVEAGIKMIACMEELG 306 (453)
Q Consensus 291 ~~~~a~~~~~~m~~~~ 306 (453)
+.+.|..=|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 7777777777766655
No 259
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.70 E-value=1.5 Score=37.83 Aligned_cols=97 Identities=13% Similarity=0.111 Sum_probs=55.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-Cc-CHHHHHHHH
Q 039177 278 TYNVYINGLCKQNNVEAGIKMIACMEELGSK--PDVITYNTLLQALCKVRELNRLRELVKEMKWKGI-VL-NLQTYSIMI 353 (453)
Q Consensus 278 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~p-~~~~~~~li 353 (453)
.|+..+. +.+.|++..|...|...++.... -....+-.|..++...|++++|..+|..+.+.-. .| -+...--|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4555554 34555577777777766664311 0122345566677777777777777776666421 11 224555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 039177 354 DGLASKGDIIEACGLLEEALNK 375 (453)
Q Consensus 354 ~~~~~~g~~~~A~~~~~~m~~~ 375 (453)
.+..+.|+.++|...|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 6666667777777777766654
No 260
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.64 E-value=2.7 Score=32.65 Aligned_cols=77 Identities=17% Similarity=0.163 Sum_probs=46.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 039177 212 VIRSLVKKEKVFDALGILNQMKSDGI--KPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCK 288 (453)
Q Consensus 212 li~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 288 (453)
-.....+.|++++|.+.|+.+...-+ +-...+--.++.+|.+.+++++|...++++++........-|...+.+++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 34445566777888877777776521 112344555777777778888888877777775533334445555555443
No 261
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.63 E-value=5 Score=35.73 Aligned_cols=172 Identities=12% Similarity=0.045 Sum_probs=104.3
Q ss_pred HhcCCcchHHHHHHHHHHcC-CCCCCH------HHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHH-H
Q 039177 91 AENSQFCDISSVLDHIEKRE-NFETPE------FIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMI-N 162 (453)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~-~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~-~ 162 (453)
.+.|+++.|...+.+..... ...|+. ..|+.-...+.+..++++|...+++ |.++++... .
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~-----------a~~~l~~~~~~ 72 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQR-----------AYDILEKPGKM 72 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH-----------HHHHHHhhhhc
Confidence 56789999999998887653 223332 2344444444444488899888876 666665421 1
Q ss_pred CCCccCh-----HhHHHHHHHHHhcCCCC-hHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 039177 163 DGFCVDG-----KTCSLILSSVCEQRDLS-SDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDG 236 (453)
Q Consensus 163 ~~~~p~~-----~~~~~ll~~~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 236 (453)
....|+. .++..+..++...+..+ .+++..+++.+.... +-...++-.-+..+.+.++.+.+.+++.+|...-
T Consensus 73 ~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 73 DKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 2223333 36677777887777652 145666766665543 2234555566777777899999999999998762
Q ss_pred CCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCh
Q 039177 237 IKPDIVCYTMVLNGV---IVQEDYVKAEELFDELLVLGLVPDV 276 (453)
Q Consensus 237 ~~~~~~~~~~ll~~~---~~~g~~~~a~~~~~~m~~~g~~~~~ 276 (453)
.- ....+..++..+ .. .....|...+..++...+.|..
T Consensus 152 ~~-~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 152 DH-SESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred cc-ccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 21 334455555554 33 3345566666666554444444
No 262
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.05 E-value=2.2 Score=36.86 Aligned_cols=96 Identities=13% Similarity=0.048 Sum_probs=50.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-ChhhHHHHHH
Q 039177 209 YTNVIRSLVKKEKVFDALGILNQMKSDGIK--PDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLV-P-DVYTYNVYIN 284 (453)
Q Consensus 209 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~-~~~~~~~li~ 284 (453)
|+.-++. .+.|++..|...|....+..+. -....+-.|..++...|++++|..+|..+.+.-.+ | -+...--+..
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 4444433 3445566666666666654221 12223445666666666666666666666553211 1 1233444444
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 039177 285 GLCKQNNVEAGIKMIACMEEL 305 (453)
Q Consensus 285 ~~~~~~~~~~a~~~~~~m~~~ 305 (453)
...+.|+.++|..+|+++.+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 555666666666666666653
No 263
>PRK11906 transcriptional regulator; Provisional
Probab=92.96 E-value=6.5 Score=37.04 Aligned_cols=79 Identities=13% Similarity=-0.001 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHH
Q 039177 223 FDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPD-VYTYNVYINGLCKQNNVEAGIKMIAC 301 (453)
Q Consensus 223 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~ 301 (453)
.+|.++.++..+.+.. |......+..+....++++.|..+|++....+ || ..+|........-+|+.++|.+.+++
T Consensus 321 ~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 321 QKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444332 44444444444444455555555555554432 22 22233333333445555555555555
Q ss_pred HHH
Q 039177 302 MEE 304 (453)
Q Consensus 302 m~~ 304 (453)
..+
T Consensus 398 alr 400 (458)
T PRK11906 398 SLQ 400 (458)
T ss_pred Hhc
Confidence 433
No 264
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.40 E-value=9 Score=35.38 Aligned_cols=268 Identities=9% Similarity=-0.011 Sum_probs=153.9
Q ss_pred HHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCc
Q 039177 87 IKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFC 166 (453)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~ 166 (453)
-.++.+..++..|+..+....+. .+.++.-|..-...|...|++++|.--...-.+...+... ....
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~--~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k-----------~~~r 122 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDM--CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSK-----------GQLR 122 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHh--CccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccc-----------cccc
Confidence 34566777788888888888776 2556666777777777777777766444332221100000 0000
Q ss_pred cC--hHhHHHHHHHHHhcCCCCh---HHHHHHHHHHHHcC-CCcChhhHHHH-HHHHHhcCChhHHHHHHHHHHhCCCCC
Q 039177 167 VD--GKTCSLILSSVCEQRDLSS---DELLGFVQEMKKLG-FCFGMVDYTNV-IRSLVKKEKVFDALGILNQMKSDGIKP 239 (453)
Q Consensus 167 p~--~~~~~~ll~~~~~~~~~~~---~~a~~~~~~~~~~g-~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~~~~ 239 (453)
++ ......++.+.....+.+. ..++..++.+.... -+|....|..+ ..++.-.|++++|...-....+....
T Consensus 123 ~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~- 201 (486)
T KOG0550|consen 123 EGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT- 201 (486)
T ss_pred hhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-
Confidence 00 0112222333222222211 11111112211111 12333444443 23455678888888887777665322
Q ss_pred CHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCChhhHH-------------HHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 240 DIVCYTMVLN--GVIVQEDYVKAEELFDELLVLGLVPDVYTYN-------------VYINGLCKQNNVEAGIKMIACMEE 304 (453)
Q Consensus 240 ~~~~~~~ll~--~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-------------~li~~~~~~~~~~~a~~~~~~m~~ 304 (453)
+ .+...++ ++.-.++.+.+...|.+.+..+ |+...-. .-.+-..+.|.+..|.+.|.+.+.
T Consensus 202 n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~ 277 (486)
T KOG0550|consen 202 N--AEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN 277 (486)
T ss_pred h--hHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence 2 2333333 3445678888888888887754 4433221 122334678999999999999886
Q ss_pred C---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHCC
Q 039177 305 L---GSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIM---IDGLASKGDIIEACGLLEEALNKG 376 (453)
Q Consensus 305 ~---~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~ 376 (453)
. +.+|+...|.....+..+.|+.++|+.--++..+. |..-.-++ ..++...++|++|.+-++...+..
T Consensus 278 idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 278 IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3 24455667888888888999999999988888776 44332222 345566788999999998887653
No 265
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.39 E-value=7.3 Score=34.29 Aligned_cols=149 Identities=11% Similarity=0.008 Sum_probs=94.3
Q ss_pred HHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCc
Q 039177 87 IKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFC 166 (453)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~ 166 (453)
...+...+++.+|..+|+...... +-+......+..+|...|+.+.|..++..++.....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~------------------ 200 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD------------------ 200 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchh------------------
Confidence 345677899999999999998874 445667888999999999999999999987753100
Q ss_pred cChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHHHH
Q 039177 167 VDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSD--GIKPDIVCY 244 (453)
Q Consensus 167 p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~ 244 (453)
........-|..+.+.... .+...+-...-.. +-|...-..+...+...|+.+.|.+.+-.+.++ |.. |...-
T Consensus 201 ~~~~~l~a~i~ll~qaa~~--~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~R 275 (304)
T COG3118 201 KAAHGLQAQIELLEQAAAT--PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEAR 275 (304)
T ss_pred hHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHH
Confidence 0011111122223333333 2222232333221 336666777888888889999988877766654 333 55556
Q ss_pred HHHHHHHHhcCCHHHH
Q 039177 245 TMVLNGVIVQEDYVKA 260 (453)
Q Consensus 245 ~~ll~~~~~~g~~~~a 260 (453)
..++..+.-.|.-+.+
T Consensus 276 k~lle~f~~~g~~Dp~ 291 (304)
T COG3118 276 KTLLELFEAFGPADPL 291 (304)
T ss_pred HHHHHHHHhcCCCCHH
Confidence 6677777666644433
No 266
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.28 E-value=14 Score=37.17 Aligned_cols=93 Identities=9% Similarity=0.003 Sum_probs=65.9
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHcCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHH
Q 039177 86 VIKTLAENSQFCDISSVLDHIEKRENFET---PEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMIN 162 (453)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~ 162 (453)
-|+-+.+.+.+++|+++.+... |..+ -..++...|..+.-.|++++|-...-.|...+...|++....|.+...
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~---~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASI---GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQ 438 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhcc---CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccc
Confidence 4566777888888888877665 3344 456888999999999999999999988887766666666666655543
Q ss_pred C----CCc------cChHhHHHHHHHHHh
Q 039177 163 D----GFC------VDGKTCSLILSSVCE 181 (453)
Q Consensus 163 ~----~~~------p~~~~~~~ll~~~~~ 181 (453)
. .+. .+...|..+|..+..
T Consensus 439 l~~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 439 LTDIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cchhhccCCCCCcccCchHHHHHHHHHHH
Confidence 1 111 244567777777765
No 267
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.15 E-value=6.4 Score=33.09 Aligned_cols=221 Identities=16% Similarity=0.022 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHcCCC-cChhhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039177 188 DELLGFVQEMKKLGFC-FGMVDYTNVIRSLVKKEKVFDALGILNQMKSD-GIKPDIVCYTMVLNGVIVQEDYVKAEELFD 265 (453)
Q Consensus 188 ~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 265 (453)
..+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+...+.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
T COG0457 40 AEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLE 119 (291)
T ss_pred HHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4444444444443311 13566777888888888888888888877652 233355666677777778888888888888
Q ss_pred HHHHCCCCCChhhHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 039177 266 ELLVLGLVPDVYTYNVYIN-GLCKQNNVEAGIKMIACMEELGS--KPDVITYNTLLQALCKVRELNRLRELVKEMKWKGI 342 (453)
Q Consensus 266 ~m~~~g~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 342 (453)
........+ ......... .+...|+++.+...+........ ......+......+...++.+.+...+....+...
T Consensus 120 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 198 (291)
T COG0457 120 KALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNP 198 (291)
T ss_pred HHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCc
Confidence 887644332 222223333 68889999999999988865221 12334444555557778899999999988887733
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhC
Q 039177 343 VLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADK 410 (453)
Q Consensus 343 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 410 (453)
......+..+...+...++++.|...+......... ....+..+...+...|..+++...+.+....
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 199 DDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred ccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 323567788888888888899999999888775322 2333444444555777788888888887743
No 268
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.91 E-value=1.1 Score=32.12 Aligned_cols=62 Identities=15% Similarity=0.217 Sum_probs=42.2
Q ss_pred cchHHHHHHHhhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 039177 61 PHILSSLLHSFSIYNCEPPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIK 124 (453)
Q Consensus 61 ~~~~~~ll~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 124 (453)
..-+..-+..+-..++.|++....+.+++|.+.+++..|.++++.+...-|-. ..+|..+++
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 33455666777788889999999999999999999999999999888764322 226655544
No 269
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.79 E-value=6.4 Score=35.23 Aligned_cols=156 Identities=10% Similarity=-0.029 Sum_probs=108.9
Q ss_pred hcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCH
Q 039177 181 EQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSD---GIKPDIVCYTMVLNGVIVQEDY 257 (453)
Q Consensus 181 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~g~~ 257 (453)
..|+. .+|-..++++.+. .|.|...++..=++|.-.|+.+.-...+++.... +++-.+..-..+.-++...|-+
T Consensus 115 ~~g~~--h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKH--HEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccc--cHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 44555 5666677777765 4778889999999999999999999999888754 2222233333344455678999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 039177 258 VKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEEL---GSKPDVITYNTLLQALCKVRELNRLRELV 334 (453)
Q Consensus 258 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 334 (453)
++|++.-++..+.+ ..|..+-.+.....-..|++.++.++...-... +--.-.+-|-...-.+...+.++.|+.+|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999998888765 457777788888888999999998877654431 10011122333444566779999999999
Q ss_pred HH-HHHC
Q 039177 335 KE-MKWK 340 (453)
Q Consensus 335 ~~-~~~~ 340 (453)
+. |.++
T Consensus 271 D~ei~k~ 277 (491)
T KOG2610|consen 271 DREIWKR 277 (491)
T ss_pred HHHHHHH
Confidence 85 4444
No 270
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=91.65 E-value=8.9 Score=33.73 Aligned_cols=98 Identities=11% Similarity=0.081 Sum_probs=47.2
Q ss_pred cChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHc-CCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHHHH
Q 039177 167 VDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKL-GFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSD-GIKPDIVCY 244 (453)
Q Consensus 167 p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~ 244 (453)
-|..+...+++......+.....--++.+-+... |-.++..+...+|..+++.+++.+-.++++..... +..-|...|
T Consensus 162 ~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW 241 (292)
T PF13929_consen 162 FDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPW 241 (292)
T ss_pred eChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchH
Confidence 3455555555554442211112222233333222 23444555555666666666666666665555443 444455556
Q ss_pred HHHHHHHHhcCCHHHHHHHH
Q 039177 245 TMVLNGVIVQEDYVKAEELF 264 (453)
Q Consensus 245 ~~ll~~~~~~g~~~~a~~~~ 264 (453)
..+|......|+..-...+.
T Consensus 242 ~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 242 AEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred HHHHHHHHHcCCHHHHHHHh
Confidence 66666666666654444433
No 271
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=91.63 E-value=9.1 Score=33.78 Aligned_cols=70 Identities=19% Similarity=0.308 Sum_probs=37.7
Q ss_pred HhcCCHHHHHHHH-HHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCcCHHHHHHHHHHHHhcC
Q 039177 287 CKQNNVEAGIKMI-ACMEELGSKPDVI----TYNTLLQALCKVRELNRLRELV-KEMKWKGIVLNLQTYSIMIDGLASKG 360 (453)
Q Consensus 287 ~~~~~~~~a~~~~-~~m~~~~~~p~~~----~~~~li~~~~~~~~~~~a~~~~-~~~~~~~~~p~~~~~~~li~~~~~~g 360 (453)
.+-..+++..... ++|.+.++ |+.. .|+.++++-- |.+-.++. +..++ ...+|.-|+.+++..|
T Consensus 266 s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsave----WnKkeelva~qalr-----hlK~yaPLL~af~s~g 335 (412)
T KOG2297|consen 266 SEEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVE----WNKKEELVAEQALR-----HLKQYAPLLAAFCSQG 335 (412)
T ss_pred ccCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHh----hchHHHHHHHHHHH-----HHHhhhHHHHHHhcCC
Confidence 3444455555444 45555554 5543 5666666543 32222222 12222 3457888889999888
Q ss_pred CHHHHH
Q 039177 361 DIIEAC 366 (453)
Q Consensus 361 ~~~~A~ 366 (453)
+.+..+
T Consensus 336 ~sEL~L 341 (412)
T KOG2297|consen 336 QSELEL 341 (412)
T ss_pred hHHHHH
Confidence 877543
No 272
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.52 E-value=0.46 Score=26.85 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 039177 209 YTNVIRSLVKKEKVFDALGILNQ 231 (453)
Q Consensus 209 ~~~li~~~~~~g~~~~a~~~~~~ 231 (453)
|+.|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555555555555555555
No 273
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.51 E-value=9.1 Score=33.58 Aligned_cols=83 Identities=11% Similarity=0.019 Sum_probs=54.3
Q ss_pred CCCCCcchHHHHHHHhhhcCCCCChhhHHHHHHHHHh------cCC-----cchHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 039177 56 QIPKQPHILSSLLHSFSIYNCEPPPEAYHFVIKTLAE------NSQ-----FCDISSVLDHIEKRENFETPEFIFIDLIK 124 (453)
Q Consensus 56 ~~~~~~~~~~~ll~~~~~~~~~p~~~~~~~ll~~~~~------~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 124 (453)
..|-.++.+...+......-......+|...+..++. +|. -..|+++|..+....|-+. .-+.++.
T Consensus 98 ~KPvt~ekLnraIdr~~k~ve~~~eee~~~~iscfgg~ev~~rqg~~vkWis~KA~ELFayLv~hkgk~v---~~~~~ie 174 (361)
T COG3947 98 PKPVTPEKLNRAIDRRLKRVELTAEEESGTQISCFGGTEVVLRQGQQVKWISRKALELFAYLVEHKGKEV---TSWEAIE 174 (361)
T ss_pred cCCCCHHHHHHHHHHHhccccccchhccCeeeEeccceeeeccCCceeeehhhHHHHHHHHHHHhcCCcc---cHhHHHH
Confidence 4556677777777776654444555666666666652 111 2468899999988865433 4456778
Q ss_pred HHHhcCChhHHHHHHhh
Q 039177 125 TYADAHRFQDSVNLFYK 141 (453)
Q Consensus 125 ~~~~~g~~~~A~~~~~~ 141 (453)
++....+..+|-..|..
T Consensus 175 ~lwpe~D~kka~s~lhT 191 (361)
T COG3947 175 ALWPEKDEKKASSLLHT 191 (361)
T ss_pred HHccccchhhHHHHHHH
Confidence 88888888887777665
No 274
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=91.37 E-value=1.3 Score=31.47 Aligned_cols=63 Identities=14% Similarity=0.233 Sum_probs=49.1
Q ss_pred CcchHHHHHHHhhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 039177 60 QPHILSSLLHSFSIYNCEPPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIK 124 (453)
Q Consensus 60 ~~~~~~~ll~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 124 (453)
+..-+..-+..+-..+..|++....+.+++|.+.+++..|.++++.+...-| .+..+|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 5556677778888889999999999999999999999999999998875522 24446655554
No 275
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.34 E-value=3.8 Score=31.12 Aligned_cols=89 Identities=15% Similarity=0.023 Sum_probs=39.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCcCHHHHHH---HHHHHHhcCC
Q 039177 286 LCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWK-GIVLNLQTYSI---MIDGLASKGD 361 (453)
Q Consensus 286 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~---li~~~~~~g~ 361 (453)
....|+++.|++.|.+....- .-....||.-.+++.-.|+.++|++=+++..+. |.+ +...+.+ -...|-..|+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCc
Confidence 344555555555555554421 113344555555555555555555555554443 222 2221111 1223444455
Q ss_pred HHHHHHHHHHHHHCC
Q 039177 362 IIEACGLLEEALNKG 376 (453)
Q Consensus 362 ~~~A~~~~~~m~~~~ 376 (453)
-+.|..=|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 555555555444444
No 276
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.22 E-value=4.7 Score=33.01 Aligned_cols=61 Identities=8% Similarity=0.200 Sum_probs=31.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039177 278 TYNVYINGLCKQNNVEAGIKMIACMEELGSKPDV--ITYNTLLQALCKVRELNRLRELVKEMK 338 (453)
Q Consensus 278 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~ 338 (453)
.+..+...|++.|+.+.|.+.|.++.+....+.. ..+-.+|+.+.-.+++..+........
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3444555555666666666666555554332222 234455555555555555555554443
No 277
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=90.93 E-value=18 Score=36.02 Aligned_cols=146 Identities=16% Similarity=0.110 Sum_probs=40.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 039177 276 VYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDG 355 (453)
Q Consensus 276 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 355 (453)
...|..-+..+..+++.. ....+.+...-.-.+.....-++..|.+.|-.+.|..+.+.+-.+-. ...-|..-+..
T Consensus 372 ~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~ 447 (566)
T PF07575_consen 372 HSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSW 447 (566)
T ss_dssp TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred cchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHH
Confidence 334444444444333222 33444444332334555667777888888888888888776655422 23356666677
Q ss_pred HHhcCCHHHHHHHHHHHHHC----CCCCChhhHHHH---------HH---------HHHhCCCHHHHHHHHHHHhhCCCC
Q 039177 356 LASKGDIIEACGLLEEALNK----GLCTQSSMFDET---------IC---------GLCQRGLVRKALELLKQMADKDVS 413 (453)
Q Consensus 356 ~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~l---------i~---------~~~~~g~~~~A~~~~~~m~~~~~~ 413 (453)
+.++|+......+.+.+.+. |...+....+.+ +. -..+.|++.+|.+.+-.+.+.++.
T Consensus 448 ~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~ 527 (566)
T PF07575_consen 448 FIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLLDNIGSPMLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIA 527 (566)
T ss_dssp HH------------------------------------------------------------------------------
T ss_pred HHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHHHHhcchhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCC
Confidence 77777777665555554432 221221111111 00 113447778887877777777777
Q ss_pred CCHHHHHHHHhc
Q 039177 414 PGARVWEALLLS 425 (453)
Q Consensus 414 p~~~~~~~ll~a 425 (453)
|...-..-|..+
T Consensus 528 Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 528 PKSFWPLLLCDA 539 (566)
T ss_dssp ------------
T ss_pred cHHHHHHHHHHH
Confidence 776655555444
No 278
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.89 E-value=0.66 Score=26.20 Aligned_cols=22 Identities=18% Similarity=0.117 Sum_probs=9.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 039177 350 SIMIDGLASKGDIIEACGLLEE 371 (453)
Q Consensus 350 ~~li~~~~~~g~~~~A~~~~~~ 371 (453)
..|...|.+.|++++|+.++++
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444444444444
No 279
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.85 E-value=12 Score=33.90 Aligned_cols=197 Identities=11% Similarity=0.042 Sum_probs=108.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHH-------HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC---C
Q 039177 207 VDYTNVIRSLVKKEKVFDALGIL-------NQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVL-GLVP---D 275 (453)
Q Consensus 207 ~~~~~li~~~~~~g~~~~a~~~~-------~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~~---~ 275 (453)
.++..+..+.++.|.+++++..- .+..+. ..--..|..+.+++-+..++.+++.+-+.-... |..+ .
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds--~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~ 121 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDS--DFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLG 121 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccc
Confidence 34555566666666666554421 111111 011234555555666666666666655544331 1111 1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCcCH
Q 039177 276 VYTYNVYINGLCKQNNVEAGIKMIACMEELGSK-----PDVITYNTLLQALCKVRELNRLRELVKEMKW----KGIVLNL 346 (453)
Q Consensus 276 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~p~~ 346 (453)
-....++-.++...+.++++++.|+...+.-.. ....+|..|-+.|.+..++++|.-+.....+ .++. |.
T Consensus 122 gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~ 200 (518)
T KOG1941|consen 122 GQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DW 200 (518)
T ss_pred chhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-ch
Confidence 123344666777777888888888776542111 1234678888888888888888766554433 2333 22
Q ss_pred H-HHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChhh----HHHHHHHHHhCCCHHHHHHHHHH
Q 039177 347 Q-TYS-----IMIDGLASKGDIIEACGLLEEALNKGL-CTQSSM----FDETICGLCQRGLVRKALELLKQ 406 (453)
Q Consensus 347 ~-~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~----~~~li~~~~~~g~~~~A~~~~~~ 406 (453)
. -|. .|.-++-..|++-+|.+..++..+..+ .-|..+ .-.+.+.|...|+.+.|+.-+++
T Consensus 201 ~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 201 SLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred hHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 1 222 233456677888778777776654311 113333 34456677788888887766655
No 280
>PRK09687 putative lyase; Provisional
Probab=90.82 E-value=11 Score=33.45 Aligned_cols=235 Identities=15% Similarity=0.032 Sum_probs=152.5
Q ss_pred ccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCCh----hHHHHHHHHHHhCCCCCCH
Q 039177 166 CVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKV----FDALGILNQMKSDGIKPDI 241 (453)
Q Consensus 166 ~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~~~~~~~ 241 (453)
.+|.......+.++...|.. .+...+..+... +|...-...+.++.+.|+. +++...+..+... .++.
T Consensus 34 d~d~~vR~~A~~aL~~~~~~---~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~ 105 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQ---DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSA 105 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcc---hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCH
Confidence 35777777778888877764 455555555443 4666666777888888764 4677777776443 3455
Q ss_pred HHHHHHHHHHHhcCCH-----HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 039177 242 VCYTMVLNGVIVQEDY-----VKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNT 316 (453)
Q Consensus 242 ~~~~~ll~~~~~~g~~-----~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 316 (453)
..-...+.++...+.. ..+...+..... .++..+-...+.++++.++ +.+...+-.+.+. +|..+-..
T Consensus 106 ~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~ 178 (280)
T PRK09687 106 CVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNW 178 (280)
T ss_pred HHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHH
Confidence 5555666666655421 223333333333 3466666677888888887 4566666666653 56666677
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCC
Q 039177 317 LLQALCKVR-ELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRG 395 (453)
Q Consensus 317 li~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 395 (453)
.+.++++.+ +...+...+..+... ++..+-...+.++.+.|+ ..|...+-+..+.+. .....+.++...|
T Consensus 179 A~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig 249 (280)
T PRK09687 179 AAFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELG 249 (280)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcC
Confidence 777777653 244566666666643 477778888899999988 456666666655542 2346688899999
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHhchh
Q 039177 396 LVRKALELLKQMADKDVSPGARVWEALLLSSV 427 (453)
Q Consensus 396 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~ 427 (453)
.. +|+..+..+.+. .||..+-...+.+|.
T Consensus 250 ~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 250 DK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred CH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 85 788888888843 567777777776663
No 281
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.69 E-value=3.8 Score=36.20 Aligned_cols=104 Identities=13% Similarity=0.188 Sum_probs=78.7
Q ss_pred CCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 039177 201 GFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSD---GIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVY 277 (453)
Q Consensus 201 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 277 (453)
|.+.+..+...++..-....++++++..+-+++.. ...|+...+ ++++.+. .-++++++.++..=++.|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 44556666777777777788899999998888753 122332222 3344443 356779999998889999999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039177 278 TYNVYINGLCKQNNVEAGIKMIACMEELG 306 (453)
Q Consensus 278 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 306 (453)
+++.+|+.+.+.+++.+|.++.-.|....
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999988877643
No 282
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.62 E-value=7.4 Score=30.94 Aligned_cols=52 Identities=8% Similarity=0.118 Sum_probs=25.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 287 CKQNNVEAGIKMIACMEELGSKPDVITYNT-LLQALCKVRELNRLRELVKEMKWK 340 (453)
Q Consensus 287 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-li~~~~~~~~~~~a~~~~~~~~~~ 340 (453)
.+.++.+++..++..+.-. .|....... -...+.+.|++.+|.++|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3455566666666655542 233322211 122345556666666666665544
No 283
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=90.11 E-value=10 Score=31.77 Aligned_cols=191 Identities=16% Similarity=0.028 Sum_probs=139.0
Q ss_pred cCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHH
Q 039177 219 KEKVFDALGILNQMKSDGIK-PDIVCYTMVLNGVIVQEDYVKAEELFDELLVL-GLVPDVYTYNVYINGLCKQNNVEAGI 296 (453)
Q Consensus 219 ~g~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~~~~~~a~ 296 (453)
.+....+...+......... .....+......+...+++..+...+...... ........+......+...+....+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45566666776666655332 13567778888899999999999998887752 23455666777777888888999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039177 297 KMIACMEELGSKPDVITYNTLLQ-ALCKVRELNRLRELVKEMKWKGI--VLNLQTYSIMIDGLASKGDIIEACGLLEEAL 373 (453)
Q Consensus 297 ~~~~~m~~~~~~p~~~~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 373 (453)
..+.........+ ......... .+...|+++.+...+........ ......+......+...++.+.|...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 9999988754333 122333333 78999999999999999866322 1234455555555778899999999999998
Q ss_pred HCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhC
Q 039177 374 NKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADK 410 (453)
Q Consensus 374 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 410 (453)
..........+..+...+...+.++.|...+......
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 231 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL 231 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh
Confidence 7642214566777888899999999999999998843
No 284
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.11 E-value=11 Score=32.20 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 039177 209 YTNVIRSLVKKEKVFDALGILNQMK 233 (453)
Q Consensus 209 ~~~li~~~~~~g~~~~a~~~~~~m~ 233 (453)
|.--..+|....++++|...+.+..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHH
Confidence 4445556666677777776666554
No 285
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.85 E-value=4.3 Score=39.24 Aligned_cols=152 Identities=10% Similarity=0.004 Sum_probs=101.2
Q ss_pred HhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCccChH
Q 039177 91 AENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCVDGK 170 (453)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 170 (453)
.-.|+++.|..++..+. ....+.+.+.+-+.|-.++|+++--. ||.
T Consensus 597 vmrrd~~~a~~vLp~I~--------k~~rt~va~Fle~~g~~e~AL~~s~D-------------------------~d~- 642 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIP--------KEIRTKVAHFLESQGMKEQALELSTD-------------------------PDQ- 642 (794)
T ss_pred hhhccccccccccccCc--------hhhhhhHHhHhhhccchHhhhhcCCC-------------------------hhh-
Confidence 34566666665554433 23566777888888888888765321 221
Q ss_pred hHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 039177 171 TCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNG 250 (453)
Q Consensus 171 ~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 250 (453)
-| ....+.|++ +.|.++..+. -+..-|..|.++..+.+++..|.+.|..... |..|+-.
T Consensus 643 rF----elal~lgrl--~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl 701 (794)
T KOG0276|consen 643 RF----ELALKLGRL--DIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLL 701 (794)
T ss_pred hh----hhhhhcCcH--HHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhh
Confidence 12 223456777 7777665432 3467799999999999999999999987763 4567777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039177 251 VIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACME 303 (453)
Q Consensus 251 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 303 (453)
+...|+-+....+-....+.|. .| .+ ..+|...|+++++.+++..-.
T Consensus 702 ~t~~g~~~~l~~la~~~~~~g~-~N-~A----F~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 702 YTSSGNAEGLAVLASLAKKQGK-NN-LA----FLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred hhhcCChhHHHHHHHHHHhhcc-cc-hH----HHHHHHcCCHHHHHHHHHhcC
Confidence 8888888877777667777663 32 22 235677899998888776543
No 286
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.68 E-value=5.7 Score=28.33 Aligned_cols=45 Identities=11% Similarity=0.130 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHh
Q 039177 364 EACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMA 408 (453)
Q Consensus 364 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (453)
++.+-++.+...++.|++.+..+-+++|.+.+++.-|+++|+-.+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444455455555665555555666666666666666655544
No 287
>PRK11906 transcriptional regulator; Provisional
Probab=89.57 E-value=19 Score=34.09 Aligned_cols=62 Identities=11% Similarity=-0.105 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039177 310 DVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEA 372 (453)
Q Consensus 310 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 372 (453)
|......+..+..-.++++.|...|++....++. ...+|......+.-+|+.++|.+.+++.
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333334444444444444444444444444322 2223333333333344444444444443
No 288
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.52 E-value=9.7 Score=30.66 Aligned_cols=23 Identities=22% Similarity=0.112 Sum_probs=10.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhh
Q 039177 387 TICGLCQRGLVRKALELLKQMAD 409 (453)
Q Consensus 387 li~~~~~~g~~~~A~~~~~~m~~ 409 (453)
|--+-.+.|++.+|.++|..+.+
T Consensus 173 LglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 173 LGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HhHHHHhccchHHHHHHHHHHHc
Confidence 33333444555555555554443
No 289
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.31 E-value=4.2 Score=33.30 Aligned_cols=96 Identities=13% Similarity=0.018 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHH--H
Q 039177 312 ITYNTLLQALCKVRELNRLRELVKEMKWKGIVLN--LQTYSIMIDGLASKGDIIEACGLLEEALNKGLCT-QSSMFD--E 386 (453)
Q Consensus 312 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~--~ 386 (453)
..+..+...|++.|+.+.|.+.|..+.+....+. ...+-.+|+.....|++..+...+.+....--.. +...-+ .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3678888999999999999999999888754433 3456778888888899999988888776542111 222222 2
Q ss_pred HHH--HHHhCCCHHHHHHHHHHH
Q 039177 387 TIC--GLCQRGLVRKALELLKQM 407 (453)
Q Consensus 387 li~--~~~~~g~~~~A~~~~~~m 407 (453)
... .+...|++.+|-+.|-+.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 222 245667888888877665
No 290
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.25 E-value=0.71 Score=25.71 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=9.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHH
Q 039177 345 NLQTYSIMIDGLASKGDIIEA 365 (453)
Q Consensus 345 ~~~~~~~li~~~~~~g~~~~A 365 (453)
+...|..+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 444444444444444444444
No 291
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.35 E-value=17 Score=31.99 Aligned_cols=71 Identities=14% Similarity=0.069 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhh-----CCCCCCHHHH
Q 039177 348 TYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMAD-----KDVSPGARVW 419 (453)
Q Consensus 348 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~ 419 (453)
+++.....|..+|.+.+|.++.+.....+ +.+...+-.++..+...|+--.|.+-++.+.+ .|+..+...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 44556678888999999999998887765 45666778888889999987666666666542 3666665544
No 292
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=87.65 E-value=23 Score=32.65 Aligned_cols=294 Identities=15% Similarity=0.115 Sum_probs=176.1
Q ss_pred HHHHHHHHHh--cCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHH--hcCChhHHHHHHhhcccCCCCcHHHHHHHHH
Q 039177 83 YHFVIKTLAE--NSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYA--DAHRFQDSVNLFYKIPKFRINRVGFAIEILN 158 (453)
Q Consensus 83 ~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~ 158 (453)
|..|-..+.. .|+-..|.++-.+..+. +..|..-...|+.+-. -.|+.++|.+-|+.|..
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-------------- 148 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-------------- 148 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc--------------
Confidence 4444444433 56666666655554432 3344444445554433 45888888888877553
Q ss_pred HHHHCCCccChHhHHHHHH----HHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039177 159 CMINDGFCVDGKTCSLILS----SVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKS 234 (453)
Q Consensus 159 ~m~~~~~~p~~~~~~~ll~----~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 234 (453)
|..|-..=|+ ..-+.|.- +.+.+.-+.....- +.-...+.+.+...+..|+++.|+++++.-+.
T Consensus 149 ---------dPEtRllGLRgLyleAqr~Gar--eaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 149 ---------DPETRLLGLRGLYLEAQRLGAR--EAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred ---------ChHHHHHhHHHHHHHHHhcccH--HHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 2333222222 23455665 66666655554432 22345688999999999999999999988775
Q ss_pred CC-CCCCHH--HHHHHHHHHH---hcCCHHHHHHHHHHHHHCCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 039177 235 DG-IKPDIV--CYTMVLNGVI---VQEDYVKAEELFDELLVLGLVPDVYTY-NVYINGLCKQNNVEAGIKMIACMEELGS 307 (453)
Q Consensus 235 ~~-~~~~~~--~~~~ll~~~~---~~g~~~~a~~~~~~m~~~g~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~~~ 307 (453)
.. +.+++. .-..|+.+-. -..+...|...-.+..+ +.||..-- .....++.+.|++.++-.+++.+-+...
T Consensus 217 ~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP 294 (531)
T COG3898 217 AKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP 294 (531)
T ss_pred HHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC
Confidence 42 333332 1222332221 12355666665555544 34654432 2345578899999999999999999765
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 039177 308 KPDVITYNTLLQALCKVRELNRLRELVKEMKWK-GIVL-NLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFD 385 (453)
Q Consensus 308 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 385 (453)
.|+. + .+..+.+.|+ .++.-++...+. .++| +..+--.+..+-...|++..|..--+.... ..|....|.
T Consensus 295 HP~i--a--~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~l 366 (531)
T COG3898 295 HPDI--A--LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYL 366 (531)
T ss_pred ChHH--H--HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHH
Confidence 4543 2 2233445554 333333333222 2233 556667777888889999988877766654 467778887
Q ss_pred HHHHHHH-hCCCHHHHHHHHHHHhhCCCCC
Q 039177 386 ETICGLC-QRGLVRKALELLKQMADKDVSP 414 (453)
Q Consensus 386 ~li~~~~-~~g~~~~A~~~~~~m~~~~~~p 414 (453)
.|.+.-. ..|+-.++..++.+..+..-.|
T Consensus 367 LlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 367 LLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred HHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 7776654 4499999999999987654444
No 293
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.48 E-value=32 Score=34.17 Aligned_cols=180 Identities=16% Similarity=0.044 Sum_probs=91.8
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHH-------CCCCCChhhHHHHHHHHHhc
Q 039177 222 VFDALGILNQMKSDGIKPDIVCYTMVLNG-----VIVQEDYVKAEELFDELLV-------LGLVPDVYTYNVYINGLCKQ 289 (453)
Q Consensus 222 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-----~~~~g~~~~a~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~ 289 (453)
...|.++++...+.|. ...-..+..+ +....+.+.|+.+|+...+ .| ......-+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 4566667766666542 2222222222 3344577777777777655 33 333444555555553
Q ss_pred C-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH----hc
Q 039177 290 N-----NVEAGIKMIACMEELGSKPDVITYNTLLQALCK-VRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLA----SK 359 (453)
Q Consensus 290 ~-----~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~----~~ 359 (453)
. +.+.|..++....+.|. |+...+-..+..... ..+...|.++|...-+.|.. ..+-.+..+|. ..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 2 55667777777776653 344433333333322 24566777777777777643 22222222222 12
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCC
Q 039177 360 GDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADKDVS 413 (453)
Q Consensus 360 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 413 (453)
-+...|..++.+..++| .|...--...+..+.. +.++.+.-.+..+.+.|..
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 35667777777777766 2221111112223333 5666666655555554443
No 294
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.44 E-value=13 Score=29.59 Aligned_cols=101 Identities=12% Similarity=0.022 Sum_probs=61.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCH
Q 039177 319 QALCKVRELNRLRELVKEMKWKGIV-LNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLV 397 (453)
Q Consensus 319 ~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 397 (453)
..-.+.++.+++..++..+.-..+. |...++.. ..+...|++.+|.++|+++.+.. |....-..|+..|....+-
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~--~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLRPEFPELDLFDG--WLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhCCCchHHHHHHH--HHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCC
Confidence 3445778999999999988776433 23334443 34578899999999999987654 3333334444444444333
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHH
Q 039177 398 RKALELLKQMADKDVSPGARVWEALL 423 (453)
Q Consensus 398 ~~A~~~~~~m~~~~~~p~~~~~~~ll 423 (453)
..=..+-+++.+.+-.|+......-+
T Consensus 94 ~~Wr~~A~evle~~~d~~a~~Lv~~L 119 (160)
T PF09613_consen 94 PSWRRYADEVLESGADPDARALVRAL 119 (160)
T ss_pred hHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 33344455566666566655554433
No 295
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.30 E-value=28 Score=33.32 Aligned_cols=159 Identities=14% Similarity=0.091 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 039177 243 CYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALC 322 (453)
Q Consensus 243 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 322 (453)
..-+++..+..+....-++.+-.+|+..| .+...+..++..|..+ ..++-..+++++.+..+. |++.-..|..-|-
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yE 143 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYE 143 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHH
Confidence 33445555555555555555555555543 3444555555555554 334445555555443321 2222223333332
Q ss_pred hcCCHHHHHHHHHHHHHCCCC-----cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhCCC
Q 039177 323 KVRELNRLRELVKEMKWKGIV-----LNLQTYSIMIDGLASKGDIIEACGLLEEALNK-GLCTQSSMFDETICGLCQRGL 396 (453)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~~~~-----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~ 396 (453)
+ ++.+.+..+|..+..+-+. .=...|..|+..- ..+.|....+..++... |..--...+.-+-.-|....+
T Consensus 144 k-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN 220 (711)
T COG1747 144 K-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENEN 220 (711)
T ss_pred H-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccC
Confidence 2 4444444444444433110 0011333333211 23444444444444332 222333334444444555555
Q ss_pred HHHHHHHHHHHh
Q 039177 397 VRKALELLKQMA 408 (453)
Q Consensus 397 ~~~A~~~~~~m~ 408 (453)
+++|++++....
T Consensus 221 ~~eai~Ilk~il 232 (711)
T COG1747 221 WTEAIRILKHIL 232 (711)
T ss_pred HHHHHHHHHHHh
Confidence 555555555443
No 296
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.26 E-value=14 Score=29.79 Aligned_cols=135 Identities=12% Similarity=0.079 Sum_probs=71.5
Q ss_pred ChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-HHH
Q 039177 168 DGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGM-VDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIV-CYT 245 (453)
Q Consensus 168 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~ 245 (453)
....|...|+. ++.+.. ++|+.-|..+.+.|...-. ...-.+.....+.|+-..|+..|++.-.....|-.. -..
T Consensus 58 sgd~flaAL~l-A~~~k~--d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~A 134 (221)
T COG4649 58 SGDAFLAALKL-AQENKT--DDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLA 134 (221)
T ss_pred chHHHHHHHHH-HHcCCc--hHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHH
Confidence 33455555553 344444 6777777777776532111 112222334556677777777777776554444322 111
Q ss_pred HHH--HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 246 MVL--NGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEEL 305 (453)
Q Consensus 246 ~ll--~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 305 (453)
-|= -.+..+|.+++.....+-+-..+-+.-...-.+|--+-.+.|++.+|...|..+...
T Consensus 135 Rlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 111 123456666666666665554443333444455555666677777777777666653
No 297
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.13 E-value=1.2 Score=24.79 Aligned_cols=32 Identities=6% Similarity=0.207 Sum_probs=24.4
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 039177 103 LDHIEKRENFETPEFIFIDLIKTYADAHRFQDSV 136 (453)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 136 (453)
|++..+.. |.+...|+.+...|...|++++|+
T Consensus 2 y~kAie~~--P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN--PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC--CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34444443 668889999999999999998885
No 298
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.02 E-value=11 Score=31.28 Aligned_cols=71 Identities=15% Similarity=-0.032 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCChhhHHHHHHHHHhcCCHHHH
Q 039177 224 DALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVL---GLVPDVYTYNVYINGLCKQNNVEAG 295 (453)
Q Consensus 224 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~~~~~~a 295 (453)
.|.+.|-.+...+.--++.....|..-|. ..+.+++..++...++. +-.+|+..+.+|.+.|.+.|+.+.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44444444444333323333332222222 34444444444444331 1134444555555555555554444
No 299
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.86 E-value=8.7 Score=31.82 Aligned_cols=20 Identities=5% Similarity=-0.062 Sum_probs=8.2
Q ss_pred CHHHHHHHHHHHHhcCCHHH
Q 039177 345 NLQTYSIMIDGLASKGDIIE 364 (453)
Q Consensus 345 ~~~~~~~li~~~~~~g~~~~ 364 (453)
|+..+.+|+..|.+.|+++.
T Consensus 177 n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred CHHHHHHHHHHHHHhcchhh
Confidence 34444444444444444333
No 300
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.25 E-value=2.2 Score=24.61 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 039177 348 TYSIMIDGLASKGDIIEACGLLEEA 372 (453)
Q Consensus 348 ~~~~li~~~~~~g~~~~A~~~~~~m 372 (453)
+++.|...|...|++++|..++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 3444444444444444444444443
No 301
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.12 E-value=19 Score=30.26 Aligned_cols=54 Identities=17% Similarity=0.103 Sum_probs=26.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039177 318 LQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEA 372 (453)
Q Consensus 318 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 372 (453)
++.+.+.+.+++++...++-++..+. |..+-..+++.|+-.|++++|..-++-.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 34444445555555555544444332 3344445555555555555555444433
No 302
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=86.05 E-value=33 Score=32.84 Aligned_cols=74 Identities=12% Similarity=0.102 Sum_probs=52.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CcCHHHHHHHH
Q 039177 280 NVYINGLCKQNNVEAGIKMIACMEELGSKP-DVITYNTLLQALCKVRELNRLRELVKEMKWKGI-VLNLQTYSIMI 353 (453)
Q Consensus 280 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~li 353 (453)
..+..++-+.|+.++|.+.|++|.+....- .......|+.++...+.+.++..++..-.+... +.-...|+..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 345556678899999999999998643221 334778899999999999999999987644322 22334555543
No 303
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=85.62 E-value=4.2 Score=30.53 Aligned_cols=50 Identities=14% Similarity=0.285 Sum_probs=41.1
Q ss_pred CcchHHHHHHHhhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 039177 60 QPHILSSLLHSFSIYNCEPPPEAYHFVIKTLAENSQFCDISSVLDHIEKR 109 (453)
Q Consensus 60 ~~~~~~~ll~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 109 (453)
+..-+...+..+-.+++.|++......+++|.+.+++..|.++|+-+...
T Consensus 64 D~wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 64 DGWEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred hHHHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 44456667777888888999999999999999999999999999888765
No 304
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.46 E-value=0.38 Score=37.79 Aligned_cols=83 Identities=14% Similarity=0.167 Sum_probs=44.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 039177 212 VIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNN 291 (453)
Q Consensus 212 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 291 (453)
+|..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 4455555666666666666666555444566666666666666655555555541 112333444555555555
Q ss_pred HHHHHHHHHH
Q 039177 292 VEAGIKMIAC 301 (453)
Q Consensus 292 ~~~a~~~~~~ 301 (453)
++++.-++..
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555554444
No 305
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=85.44 E-value=33 Score=32.35 Aligned_cols=284 Identities=13% Similarity=0.079 Sum_probs=135.9
Q ss_pred HHHhcCCcchHHHHHHHHHHcCCCCCC------HHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHH
Q 039177 89 TLAENSQFCDISSVLDHIEKRENFETP------EFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMIN 162 (453)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~ 162 (453)
.+-+.+++.++..+|.++.+.. ..+ ...-+.++++|...+ ++........ +.+
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~--~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~------------------l~~ 73 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK--ESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLME------------------LRQ 73 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--hcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHH------------------HHH
Confidence 3567889999999999887752 222 233456667766532 2222222211 221
Q ss_pred CCCccChHhHHHHHHHH--HhcCCCChHHHHHHHHHHHHc--CCCc------------ChhhHHHHHHHHHhcCChhHHH
Q 039177 163 DGFCVDGKTCSLILSSV--CEQRDLSSDELLGFVQEMKKL--GFCF------------GMVDYTNVIRSLVKKEKVFDAL 226 (453)
Q Consensus 163 ~~~~p~~~~~~~ll~~~--~~~~~~~~~~a~~~~~~~~~~--g~~~------------~~~~~~~li~~~~~~g~~~~a~ 226 (453)
..| ...|..+..++ .+.+.. .+|.+.+...... +..+ |...-+..+.++...|++.++.
T Consensus 74 --~~~-~s~~l~LF~~L~~Y~~k~~--~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR 148 (549)
T PF07079_consen 74 --QFG-KSAYLPLFKALVAYKQKEY--RKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGR 148 (549)
T ss_pred --hcC-CchHHHHHHHHHHHHhhhH--HHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHH
Confidence 122 23344444443 345555 7777777665554 2222 2222356677788888998888
Q ss_pred HHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHH
Q 039177 227 GILNQMKSDG----IKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDV-YTYNVYINGLCKQNNVEAGIKMIAC 301 (453)
Q Consensus 227 ~~~~~m~~~~----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~ 301 (453)
.+++++...- ..-+..+|+.++-.+.+. .|-++.+.. ..|. .-|--+|..|.+.=+ .++.
T Consensus 149 ~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS--------YfLEl~e~~-s~dl~pdyYemilfY~kki~------~~d~ 213 (549)
T PF07079_consen 149 AILNRIIERLLKRECEWNSDMYDRAVLMLSRS--------YFLELKESM-SSDLYPDYYEMILFYLKKIH------AFDQ 213 (549)
T ss_pred HHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH--------HHHHHHHhc-ccccChHHHHHHHHHHHHHH------HHhh
Confidence 8888887543 335777777766555432 333332211 1111 112223333322211 1111
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 039177 302 MEELGSKPDVITYNTLLQALCKVR--ELNRLRELVKEMKWKGIVLNLQ-TYSIMIDGLASKGDIIEACGLLEEALNKGLC 378 (453)
Q Consensus 302 m~~~~~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 378 (453)
-.-..+-|.......++....-.. .+.--.+++..-...-+.|+-. ....|+..+.+ +.+++..+.+.+....+.
T Consensus 214 ~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~ 291 (549)
T PF07079_consen 214 RPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIE 291 (549)
T ss_pred chHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHH
Confidence 111112344444444444332211 1222223333223333444432 23344444443 445555555444332211
Q ss_pred ----CChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHH
Q 039177 379 ----TQSSMFDETICGLCQRGLVRKALELLKQMADKDVSPGAR 417 (453)
Q Consensus 379 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 417 (453)
--..+|..++....+.++..+|.+.+.-+. -+.|+..
T Consensus 292 ~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~--~ldp~~s 332 (549)
T PF07079_consen 292 KLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLK--ILDPRIS 332 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--hcCCcch
Confidence 113356666777777777777777777665 2344444
No 306
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.36 E-value=0.31 Score=38.31 Aligned_cols=84 Identities=18% Similarity=0.132 Sum_probs=46.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 039177 282 YINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGD 361 (453)
Q Consensus 282 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 361 (453)
+|..+.+.+.++....+++.+...+..-+....+.++..|++.+..++..++++. . +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~---~----~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT---S----NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS---S----SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc---c----cccCHHHHHHHHHhcch
Confidence 4555556666666666666666555444566666777777776666666666551 1 11222345555566666
Q ss_pred HHHHHHHHHHH
Q 039177 362 IIEACGLLEEA 372 (453)
Q Consensus 362 ~~~A~~~~~~m 372 (453)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66665555543
No 307
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.36 E-value=2.1 Score=24.71 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=13.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHH
Q 039177 208 DYTNVIRSLVKKEKVFDALGILNQMK 233 (453)
Q Consensus 208 ~~~~li~~~~~~g~~~~a~~~~~~m~ 233 (453)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45555555555555555555555544
No 308
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=85.30 E-value=29 Score=31.63 Aligned_cols=231 Identities=10% Similarity=0.004 Sum_probs=124.1
Q ss_pred cCCcchHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCccChHh
Q 039177 93 NSQFCDISSVLDHIEKRE-NFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCVDGKT 171 (453)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 171 (453)
..+.+.|+..+......- .......++..+..+.++.|.+++++..--. .++.+.+..... .--..
T Consensus 19 s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~s-----------qi~~a~~~~ds~--~~~ea 85 (518)
T KOG1941|consen 19 SNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVS-----------QIDTARELEDSD--FLLEA 85 (518)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHH-----------HHHHHHHHHHHH--HHHHH
Confidence 444555555554444321 0011223667777788888877776653211 111122121110 01123
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHc-CCCc---ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC-----CCCCCHH
Q 039177 172 CSLILSSVCEQRDLSSDELLGFVQEMKKL-GFCF---GMVDYTNVIRSLVKKEKVFDALGILNQMKSD-----GIKPDIV 242 (453)
Q Consensus 172 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~-g~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~~~~~ 242 (453)
|..+-+++-+..++ .+++.+-..-... |..+ -....-++..++...+.++++++.|+...+- +......
T Consensus 86 ~lnlar~~e~l~~f--~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 86 YLNLARSNEKLCEF--HKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHh--hhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 44455555555444 4444443332221 2112 1123345667777778889999988887652 1222345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCChh-hH-----HHHHHHHHhcCCHHHHHHHHHHHHH----CCCC
Q 039177 243 CYTMVLNGVIVQEDYVKAEELFDELLV----LGLVPDVY-TY-----NVYINGLCKQNNVEAGIKMIACMEE----LGSK 308 (453)
Q Consensus 243 ~~~~ll~~~~~~g~~~~a~~~~~~m~~----~g~~~~~~-~~-----~~li~~~~~~~~~~~a~~~~~~m~~----~~~~ 308 (453)
.|-.|-+.|.+..|+++|.-+.....+ .++. |.. -| -.|.-++...|.+..|.+.-++..+ .|-.
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence 777888889999999988876665433 2221 211 12 2233456677777777777666543 3422
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 309 PD-VITYNTLLQALCKVRELNRLRELVKEMKW 339 (453)
Q Consensus 309 p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 339 (453)
+. ......+.+.|-..|+.+.|..-|++...
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 21 23455667788889999988877776543
No 309
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.89 E-value=32 Score=31.65 Aligned_cols=65 Identities=12% Similarity=0.039 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 240 DIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVP---DVYTYNVYINGLCKQNNVEAGIKMIACMEE 304 (453)
Q Consensus 240 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 304 (453)
...+|..+...+.+.|.++.|...+..+...+... +....-.-.......|+..+|...++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55677788888888888888888888877643211 233444445556677888888888877776
No 310
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.81 E-value=32 Score=31.63 Aligned_cols=65 Identities=15% Similarity=0.129 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---ChhhHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 039177 345 NLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCT---QSSMFDETICGLCQRGLVRKALELLKQMAD 409 (453)
Q Consensus 345 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (453)
...+|..+...+.+.|.++.|...+..+...+... ...+.-.-+..+...|+.++|+..+++..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567777778888888888888887776643111 223333345566677788888887777765
No 311
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=84.45 E-value=3.5 Score=22.56 Aligned_cols=27 Identities=26% Similarity=0.267 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 348 TYSIMIDGLASKGDIIEACGLLEEALN 374 (453)
Q Consensus 348 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 374 (453)
+|..+..+|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344444444555555555555544443
No 312
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=84.04 E-value=18 Score=28.25 Aligned_cols=79 Identities=15% Similarity=0.169 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCChhhHHHHHHHHHhCCC-HHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 039177 350 SIMIDGLASKGDIIEACGLLEEALNKG-----LCTQSSMFDETICGLCQRGL-VRKALELLKQMADKDVSPGARVWEALL 423 (453)
Q Consensus 350 ~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~ll 423 (453)
+.++.-.+..+.+.....+++.+.... -..+...|.+++.+..+..- ---+..+|+.|++.+++++..-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 444444444445554444444442110 02344567777777755554 344566677777767777777777777
Q ss_pred hchhc
Q 039177 424 LSSVS 428 (453)
Q Consensus 424 ~a~~~ 428 (453)
.+|.+
T Consensus 123 ~~~l~ 127 (145)
T PF13762_consen 123 KAALR 127 (145)
T ss_pred HHHHc
Confidence 77643
No 313
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=83.91 E-value=2.7 Score=23.04 Aligned_cols=27 Identities=15% Similarity=0.119 Sum_probs=13.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039177 208 DYTNVIRSLVKKEKVFDALGILNQMKS 234 (453)
Q Consensus 208 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 234 (453)
+|..+...|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344445555555555555555555443
No 314
>PHA02875 ankyrin repeat protein; Provisional
Probab=83.30 E-value=22 Score=33.70 Aligned_cols=16 Identities=13% Similarity=0.239 Sum_probs=8.3
Q ss_pred HHHHHHHHHCCCccCh
Q 039177 154 IEILNCMINDGFCVDG 169 (453)
Q Consensus 154 ~~~~~~m~~~~~~p~~ 169 (453)
.++++.+.+.|..|+.
T Consensus 15 ~~iv~~Ll~~g~~~n~ 30 (413)
T PHA02875 15 LDIARRLLDIGINPNF 30 (413)
T ss_pred HHHHHHHHHCCCCCCc
Confidence 3445555555655544
No 315
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=83.22 E-value=2.2 Score=23.25 Aligned_cols=23 Identities=17% Similarity=0.079 Sum_probs=10.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHh
Q 039177 386 ETICGLCQRGLVRKALELLKQMA 408 (453)
Q Consensus 386 ~li~~~~~~g~~~~A~~~~~~m~ 408 (453)
.+...|.+.|++++|++.|++..
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 33444445555555555554444
No 316
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=83.10 E-value=60 Score=33.48 Aligned_cols=196 Identities=13% Similarity=0.052 Sum_probs=108.5
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHH-------HHHHHHHH-HHhcCCHHHHHHHHHHHHHC----CCCCChhhHHHH
Q 039177 215 SLVKKEKVFDALGILNQMKSDGIKPDIV-------CYTMVLNG-VIVQEDYVKAEELFDELLVL----GLVPDVYTYNVY 282 (453)
Q Consensus 215 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------~~~~ll~~-~~~~g~~~~a~~~~~~m~~~----g~~~~~~~~~~l 282 (453)
......++++|..+..++...-..|+.. .|+.+-.. ....|+++.|.++-+..... -..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3445678899999888887653333222 33333222 23458889988888776542 223455666777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHH--HHHHhcCC--HHHHHHHHHHHHHC-----CC-CcCHHHH
Q 039177 283 INGLCKQNNVEAGIKMIACMEELGSKPDVIT---YNTLL--QALCKVRE--LNRLRELVKEMKWK-----GI-VLNLQTY 349 (453)
Q Consensus 283 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~li--~~~~~~~~--~~~a~~~~~~~~~~-----~~-~p~~~~~ 349 (453)
..+..-.|++++|..+..+..+..-.-++.. |..+. ..+...|+ +.+....|...... .. .+-..++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 7888889999999988877665322233333 33332 23445663 33333344433322 11 1223455
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCChhhH--HHHHHHHHhCCCHHHHHHHHHHHhhC
Q 039177 350 SIMIDGLASK-GDIIEACGLLEEALNKGLCTQSSMF--DETICGLCQRGLVRKALELLKQMADK 410 (453)
Q Consensus 350 ~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~ 410 (453)
..+..++.+. +...+|..-+.--......|-...+ ..|+..+...|+.++|...++++...
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 5566666552 1122222222222222222222222 25677888899999999999998764
No 317
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.91 E-value=46 Score=31.99 Aligned_cols=180 Identities=8% Similarity=0.062 Sum_probs=120.5
Q ss_pred ccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 039177 166 CVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYT 245 (453)
Q Consensus 166 ~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 245 (453)
..|.....+++..++..... .-+..+..+|...| .+-..|-.++..|... ..++-..+|+++.+..+. |++.-.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~--~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~R 136 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKN--QIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGR 136 (711)
T ss_pred cccchHHHHHHHHhccchHH--HHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHH
Confidence 34666777888888877777 77888888888877 6677888899999888 567788888888887654 555445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHH
Q 039177 246 MVLNGVIVQEDYVKAEELFDELLVLGLV-----PDVYTYNVYINGLCKQNNVEAGIKMIACMEE-LGSKPDVITYNTLLQ 319 (453)
Q Consensus 246 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~~~~~li~ 319 (453)
.|..-|-+ ++...+...|.....+=+. .-...|.-++.. -..+.|....+...+.. .|...-.+.+--+-.
T Consensus 137 eLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~ 213 (711)
T COG1747 137 ELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYK 213 (711)
T ss_pred HHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 55555544 7888888888877653221 012245444432 13456666666666654 333344556666667
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 039177 320 ALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDG 355 (453)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 355 (453)
-|....++++|++++..+.+.+-+ |...-..+|.-
T Consensus 214 ~Ys~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~ 248 (711)
T COG1747 214 KYSENENWTEAIRILKHILEHDEK-DVWARKEIIEN 248 (711)
T ss_pred HhccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHH
Confidence 788888999999999988877544 55555555544
No 318
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.38 E-value=16 Score=26.42 Aligned_cols=47 Identities=15% Similarity=0.024 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039177 188 DELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKS 234 (453)
Q Consensus 188 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 234 (453)
-+..+-++.+....+.|+..+..+.+++|.+.+++..|+++|+-.+.
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34444455555555556666666666666666666666666655554
No 319
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=82.08 E-value=53 Score=32.13 Aligned_cols=302 Identities=10% Similarity=0.014 Sum_probs=161.6
Q ss_pred hhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHH
Q 039177 80 PEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNC 159 (453)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~ 159 (453)
-..|+.+|.---...+.+.+..+++.+... +|.-..-|-.....=.+.|..+.+.++|++-.
T Consensus 45 f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv---------------- 106 (577)
T KOG1258|consen 45 FDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGV---------------- 106 (577)
T ss_pred ccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHH----------------
Confidence 334555555444444556667777777754 23333355555555566777777777777632
Q ss_pred HHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHc-CCC-cChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039177 160 MINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKL-GFC-FGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGI 237 (453)
Q Consensus 160 m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~-g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 237 (453)
.|++-+...|...+..++.... +.+.....|+..... |.. .+...|-..|.--..++++.....++++..+.
T Consensus 107 ---~aip~SvdlW~~Y~~f~~n~~~-d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei-- 180 (577)
T KOG1258|consen 107 ---QAIPLSVDLWLSYLAFLKNNNG-DPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI-- 180 (577)
T ss_pred ---HhhhhHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh--
Confidence 2455666677777776655333 336677777777655 422 23456888888888888999999999988864
Q ss_pred CCCHHHHHHHHHHHHh---c------CCHHHHHHHHHHHHHC-C---CCCChhhHHHHHH--------------------
Q 039177 238 KPDIVCYTMVLNGVIV---Q------EDYVKAEELFDELLVL-G---LVPDVYTYNVYIN-------------------- 284 (453)
Q Consensus 238 ~~~~~~~~~ll~~~~~---~------g~~~~a~~~~~~m~~~-g---~~~~~~~~~~li~-------------------- 284 (453)
....|+....-|.+ . ...+++.++-....+. . ..+....+..-+.
T Consensus 181 --P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~ 258 (577)
T KOG1258|consen 181 --PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV 258 (577)
T ss_pred --hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH
Confidence 22223332222221 1 1223333222222210 0 0001111111110
Q ss_pred -----HHHhcCCHHHHHHHHHHHHHC---CCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 039177 285 -----GLCKQNNVEAGIKMIACMEEL---GSK----PDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIM 352 (453)
Q Consensus 285 -----~~~~~~~~~~a~~~~~~m~~~---~~~----p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 352 (453)
+|-......+....|+.-++. .++ ++..+|..-+.--.+.|+.+.+.-+|+...-.- ..-...|-..
T Consensus 259 ~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky 337 (577)
T KOG1258|consen 259 SIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKY 337 (577)
T ss_pred HHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHH
Confidence 111111112222222222221 112 234578888888888888888888888776541 1123344445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC--CChhhHHHHHHHHHhCCCHHHHHHHHHHHhhC
Q 039177 353 IDGLASKGDIIEACGLLEEALNKGLC--TQSSMFDETICGLCQRGLVRKALELLKQMADK 410 (453)
Q Consensus 353 i~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 410 (453)
+.-....|+.+-|..++....+--.+ |....+.+ ...-..|+++.|..+++...+.
T Consensus 338 ~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a--~f~e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 338 ARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA--RFEESNGNFDDAKVILQRIESE 395 (577)
T ss_pred HHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH--HHHHhhccHHHHHHHHHHHHhh
Confidence 55555558888888777766554322 22222222 2233457888898888888765
No 320
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=81.18 E-value=5.5 Score=21.59 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 347 QTYSIMIDGLASKGDIIEACGLLEEALNK 375 (453)
Q Consensus 347 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 375 (453)
..|..+...|...|++++|++.|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35666777788888888888888877654
No 321
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=80.56 E-value=41 Score=29.79 Aligned_cols=115 Identities=10% Similarity=0.141 Sum_probs=54.7
Q ss_pred ChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHH-CCCCCChhhHHHHHHHHHhcCCHHHHH
Q 039177 221 KVFDALGILNQMKS-DGIKPDIVCYTMVLNGVIVQ-E-DYVKAEELFDELLV-LGLVPDVYTYNVYINGLCKQNNVEAGI 296 (453)
Q Consensus 221 ~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~-g-~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~~~~~~a~ 296 (453)
.+.+|+++|+.... ..+--|..+...+++..... + ....-.++.+.+.. .|..++..+...+|..+++.+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34556666653221 12333555555566555441 1 12222223333322 123455555555566666666666655
Q ss_pred HHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039177 297 KMIACMEEL-GSKPDVITYNTLLQALCKVRELNRLRELVK 335 (453)
Q Consensus 297 ~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 335 (453)
++++..... +..-|...|..+|..-...|+..-...+..
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 555554443 333455556666666666665544444433
No 322
>PHA02875 ankyrin repeat protein; Provisional
Probab=79.43 E-value=29 Score=32.91 Aligned_cols=170 Identities=17% Similarity=0.160 Sum_probs=73.5
Q ss_pred HHHHHHHHCCCccChH--hHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChh---hHHHHHHHHHhcCChhHHHHHH
Q 039177 155 EILNCMINDGFCVDGK--TCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMV---DYTNVIRSLVKKEKVFDALGIL 229 (453)
Q Consensus 155 ~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~li~~~~~~g~~~~a~~~~ 229 (453)
++.+.+.+.|..|+.. .....+...+..|+. +.+.. +.+.|...+.. ...+.+...+..|+. +++
T Consensus 49 ~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~--~~v~~----Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~----~iv 118 (413)
T PHA02875 49 EAIKLLMKHGAIPDVKYPDIESELHDAVEEGDV--KAVEE----LLDLGKFADDVFYKDGMTPLHLATILKKL----DIM 118 (413)
T ss_pred HHHHHHHhCCCCccccCCCcccHHHHHHHCCCH--HHHHH----HHHcCCcccccccCCCCCHHHHHHHhCCH----HHH
Confidence 4555666666655432 112234444555655 33332 33333211110 112333444455554 344
Q ss_pred HHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 230 NQMKSDGIKPDIVC--YTMVLNGVIVQEDYVKAEELFDELLVLGLVPD---VYTYNVYINGLCKQNNVEAGIKMIACMEE 304 (453)
Q Consensus 230 ~~m~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 304 (453)
+.+.+.|..|+... -.+.+...+..|+.+-+.. +.+.|..++ ..-.+.+. ..+..|+.+ +.+.+.+
T Consensus 119 ~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~----Ll~~g~~~~~~d~~g~TpL~-~A~~~g~~e----iv~~Ll~ 189 (413)
T PHA02875 119 KLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL----LIDHKACLDIEDCCGCTPLI-IAMAKGDIA----ICKMLLD 189 (413)
T ss_pred HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH----HHhcCCCCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHh
Confidence 44445555443221 1123344445666554333 334443332 22233333 334455544 3444555
Q ss_pred CCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH
Q 039177 305 LGSKPDVIT---YNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQ 347 (453)
Q Consensus 305 ~~~~p~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 347 (453)
.|..++... ..+++...+..|+.+ +.+.+.+.|..++..
T Consensus 190 ~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~~ 231 (413)
T PHA02875 190 SGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNIM 231 (413)
T ss_pred CCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcchH
Confidence 665554321 123444344556543 444555667666643
No 323
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.43 E-value=34 Score=33.53 Aligned_cols=100 Identities=16% Similarity=0.103 Sum_probs=52.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 039177 287 CKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEAC 366 (453)
Q Consensus 287 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 366 (453)
.+.|+++.|.++..+. -+..-|..|.++..+.+++..|.+.|..... |..|+-.+...|+.+...
T Consensus 648 l~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 3556666665554433 1334466666666666666666666553332 344555555556555555
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 039177 367 GLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQM 407 (453)
Q Consensus 367 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (453)
.+-....+.| +.|.. ..+|...|+++++.+++.+-
T Consensus 713 ~la~~~~~~g-~~N~A-----F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 713 VLASLAKKQG-KNNLA-----FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHhhc-ccchH-----HHHHHHcCCHHHHHHHHHhc
Confidence 5555544444 22222 22445556666666555443
No 324
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=79.33 E-value=41 Score=29.13 Aligned_cols=189 Identities=9% Similarity=-0.033 Sum_probs=100.9
Q ss_pred cChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcC--CCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 039177 167 VDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLG--FCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCY 244 (453)
Q Consensus 167 p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 244 (453)
|-...|+..+.. .+.|++ ++|.+.|+.+.... -+-...+.-.++-++-+.++++.|+..+++....-+.-...-|
T Consensus 33 p~~~LY~~g~~~-L~~gn~--~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY 109 (254)
T COG4105 33 PASELYNEGLTE-LQKGNY--EEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADY 109 (254)
T ss_pred CHHHHHHHHHHH-HhcCCH--HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhH
Confidence 334455555553 466777 99999999988663 1223444556777888999999999999999876443333455
Q ss_pred HHHHHHHHhc-------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 039177 245 TMVLNGVIVQ-------EDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTL 317 (453)
Q Consensus 245 ~~ll~~~~~~-------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 317 (453)
..-|.+.+.. .|...+.+.+..+.+ +|.-|=.+.-...|......+... =...=..+
T Consensus 110 ~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~d~----LA~~Em~I 173 (254)
T COG4105 110 AYYLKGLSYFFQIDDVTRDQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLNDA----LAGHEMAI 173 (254)
T ss_pred HHHHHHHHHhccCCccccCHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHHHH----HHHHHHHH
Confidence 5556555522 122222222222221 111111111111121111111110 00001234
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 318 LQALCKVRELNRLRELVKEMKWKGI--VLNLQTYSIMIDGLASKGDIIEACGLLEEALN 374 (453)
Q Consensus 318 i~~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 374 (453)
.+.|.+.|.+-.|..-+++|++.=. .-.....-.+..+|...|..++|.+.-.-+..
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 5667777777777777777777611 11223445556677777777777666655543
No 325
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.20 E-value=20 Score=30.19 Aligned_cols=60 Identities=10% Similarity=0.089 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 244 YTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEE 304 (453)
Q Consensus 244 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 304 (453)
.+..++.+.+.+.+.+++....+-++.. +.|...-..++..+|-.|++++|..-++-.-.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 3445556666666666666666655543 23444455566666667777766665555544
No 326
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.89 E-value=30 Score=27.22 Aligned_cols=50 Identities=10% Similarity=0.236 Sum_probs=28.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039177 288 KQNNVEAGIKMIACMEELGSKPDVI---TYNTLLQALCKVRELNRLRELVKEMKWKG 341 (453)
Q Consensus 288 ~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 341 (453)
..++++++..++..|.-. .|+.. ++.. -.+...|++++|.++|+++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDG--WLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccC
Confidence 456666666666666653 33332 2222 23456666666666666666653
No 327
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=78.82 E-value=7 Score=21.21 Aligned_cols=25 Identities=32% Similarity=0.272 Sum_probs=12.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 039177 349 YSIMIDGLASKGDIIEACGLLEEAL 373 (453)
Q Consensus 349 ~~~li~~~~~~g~~~~A~~~~~~m~ 373 (453)
|..+...|...|++++|...|++..
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444555555555555554443
No 328
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=78.44 E-value=5 Score=20.56 Aligned_cols=22 Identities=9% Similarity=0.092 Sum_probs=15.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHh
Q 039177 119 FIDLIKTYADAHRFQDSVNLFY 140 (453)
Q Consensus 119 ~~~li~~~~~~g~~~~A~~~~~ 140 (453)
...+...+...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4456677777777777777664
No 329
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=78.10 E-value=9.2 Score=23.30 Aligned_cols=34 Identities=21% Similarity=0.359 Sum_probs=21.0
Q ss_pred HHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHh
Q 039177 391 LCQRGLVRKALELLKQMADKDVSPGARVWEALLL 424 (453)
Q Consensus 391 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 424 (453)
..+.|-.+++..++++|.+.|+..+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3455666666666666666666666666665553
No 330
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=77.76 E-value=42 Score=29.48 Aligned_cols=89 Identities=10% Similarity=0.036 Sum_probs=62.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--
Q 039177 246 MVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCK-- 323 (453)
Q Consensus 246 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-- 323 (453)
.=|.+++..+++.++....-+.-+.--+........-|-.|.+.+.+..+.++-.......-.-+...|..++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 457788899999998877655544221223445555566789999999999988887764333344568888777764
Q ss_pred ---cCCHHHHHHHH
Q 039177 324 ---VRELNRLRELV 334 (453)
Q Consensus 324 ---~~~~~~a~~~~ 334 (453)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 69999998887
No 331
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=77.69 E-value=7.1 Score=23.29 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=8.9
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 039177 319 QALCKVRELNRLRELVKEMK 338 (453)
Q Consensus 319 ~~~~~~~~~~~a~~~~~~~~ 338 (453)
.+|...|+.+.|..+++++.
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 34444444444444444444
No 332
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=77.59 E-value=36 Score=32.31 Aligned_cols=155 Identities=12% Similarity=0.112 Sum_probs=99.8
Q ss_pred HHHHHHHHhcCCHHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 039177 280 NVYINGLCKQNNVEAGIK-MIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLAS 358 (453)
Q Consensus 280 ~~li~~~~~~~~~~~a~~-~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 358 (453)
..-|.--...|++..|.+ ++.-+....-.|+.....+. .....|.++.+.+.+....+. +.....+..++++...+
T Consensus 293 ~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~ 369 (831)
T PRK15180 293 TLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHG 369 (831)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhc
Confidence 334444556777776654 45555554445655544444 346789999999988776654 33356688889999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHhc--hhcchhhHHHH
Q 039177 359 KGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADKDVSPGARVWEALLLS--SVSKLDFVNTS 436 (453)
Q Consensus 359 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a--~~~~~~~~~~~ 436 (453)
.|++++|..+-+.|....+. +......-...--..|-++++...+++...-. .|...-|..+++. |...++...+.
T Consensus 370 l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~-~~~~~g~v~~~~~~~~~~~~~~~~~~ 447 (831)
T PRK15180 370 LARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN-PETQSGWVNFLSSTQYFNDGNAFSEA 447 (831)
T ss_pred hhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC-ChhcccceeeeccceeccCcchHHHH
Confidence 99999999999988877654 33332222333455678899999998876321 3455566666654 45555555555
Q ss_pred HHH
Q 039177 437 FIR 439 (453)
Q Consensus 437 ~~~ 439 (453)
|..
T Consensus 448 ~~~ 450 (831)
T PRK15180 448 FHA 450 (831)
T ss_pred HHh
Confidence 443
No 333
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.23 E-value=40 Score=27.88 Aligned_cols=91 Identities=11% Similarity=-0.012 Sum_probs=46.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCC
Q 039177 319 QALCKVRELNRLRELVKEMKWKGIVLN--LQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGL 396 (453)
Q Consensus 319 ~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 396 (453)
..+...+++++|...++........-+ ..+--.|.+.....|.+|+|+..++.....+..+ .....--+.+...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHHHcCc
Confidence 445566666666666665554311101 1111223344555666666666666655544211 111222345666666
Q ss_pred HHHHHHHHHHHhhCC
Q 039177 397 VRKALELLKQMADKD 411 (453)
Q Consensus 397 ~~~A~~~~~~m~~~~ 411 (453)
-++|..-|++....+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 677766666666554
No 334
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=77.23 E-value=86 Score=31.69 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 039177 85 FVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADA 129 (453)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 129 (453)
.+|--|.++|++++|.++....... +......+...+..|+..
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~--~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ--FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG--S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh--hcchhHHHHHHHHHHHhC
Confidence 4666788888888888888544433 233444666777777664
No 335
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=76.77 E-value=7 Score=21.22 Aligned_cols=27 Identities=15% Similarity=0.116 Sum_probs=17.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039177 208 DYTNVIRSLVKKEKVFDALGILNQMKS 234 (453)
Q Consensus 208 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 234 (453)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666666666666666666554
No 336
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=76.53 E-value=39 Score=29.67 Aligned_cols=90 Identities=9% Similarity=-0.058 Sum_probs=64.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-
Q 039177 210 TNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCK- 288 (453)
Q Consensus 210 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~- 288 (453)
..=|.+++..+++.+++...-+.-+.--+........-|-.|.+.+.+..+.++-..-+..--.-+...|.++...|..
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 3458999999999999876655544322223344556666799999999999998887764333445568887777665
Q ss_pred ----cCCHHHHHHHH
Q 039177 289 ----QNNVEAGIKMI 299 (453)
Q Consensus 289 ----~~~~~~a~~~~ 299 (453)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 79999998877
No 337
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.47 E-value=92 Score=32.64 Aligned_cols=26 Identities=23% Similarity=0.301 Sum_probs=18.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 039177 209 YTNVIRSLVKKEKVFDALGILNQMKS 234 (453)
Q Consensus 209 ~~~li~~~~~~g~~~~a~~~~~~m~~ 234 (453)
|..|+..|...|+.++|+++|.+..+
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 66677777777777777777777665
No 338
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=74.81 E-value=7.8 Score=23.13 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=15.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC
Q 039177 352 MIDGLASKGDIIEACGLLEEALNKG 376 (453)
Q Consensus 352 li~~~~~~g~~~~A~~~~~~m~~~~ 376 (453)
|..+|...|+.+.|..++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4556666666666666666666443
No 339
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=74.78 E-value=62 Score=28.86 Aligned_cols=75 Identities=12% Similarity=0.151 Sum_probs=41.9
Q ss_pred HHHHHHhcCCHHHHHHHHHH-HHHCCCCCChh----hHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 039177 247 VLNGVIVQEDYVKAEELFDE-LLVLGLVPDVY----TYNVYINGLCKQNNVE-AGIKMIACMEELGSKPDVITYNTLLQA 320 (453)
Q Consensus 247 ll~~~~~~g~~~~a~~~~~~-m~~~g~~~~~~----~~~~li~~~~~~~~~~-~a~~~~~~m~~~~~~p~~~~~~~li~~ 320 (453)
|..-..+...+++.....++ |.+.+ -|+.. .|..++++--=+.+-+ -|.+.++ ...+|..|+.+
T Consensus 261 L~~q~s~e~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsaveWnKkeelva~qalr---------hlK~yaPLL~a 330 (412)
T KOG2297|consen 261 LQEQVSEEDPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSAVEWNKKEELVAEQALR---------HLKQYAPLLAA 330 (412)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHHHhhchHHHHHHHHHHH---------HHHhhhHHHHH
Confidence 33344444556666655554 44444 46544 5777776533222111 1223333 34468999999
Q ss_pred HHhcCCHHHHH
Q 039177 321 LCKVRELNRLR 331 (453)
Q Consensus 321 ~~~~~~~~~a~ 331 (453)
++..|+.+..+
T Consensus 331 f~s~g~sEL~L 341 (412)
T KOG2297|consen 331 FCSQGQSELEL 341 (412)
T ss_pred HhcCChHHHHH
Confidence 99999987654
No 340
>PRK09687 putative lyase; Provisional
Probab=74.54 E-value=63 Score=28.80 Aligned_cols=220 Identities=9% Similarity=-0.025 Sum_probs=97.0
Q ss_pred CChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChh----HHHHHHhhcccCCCCcHHHH
Q 039177 78 PPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQ----DSVNLFYKIPKFRINRVGFA 153 (453)
Q Consensus 78 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~----~A~~~~~~~~~~~~~~~~~a 153 (453)
+|...-...+.++...|..+ +...+..+.+ .+|..+-...+.+++..|+.+ ++...+..
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~----~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~------------ 97 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQD-VFRLAIELCS----SKNPIERDIGADILSQLGMAKRCQDNVFNILNN------------ 97 (280)
T ss_pred CCHHHHHHHHHHHHhcCcch-HHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHH------------
Confidence 45555555666666665432 3333333333 235556666666666666532 23332222
Q ss_pred HHHHHHHHHCCCccChHhHHHHHHHHHhcCCCCh---HHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHH
Q 039177 154 IEILNCMINDGFCVDGKTCSLILSSVCEQRDLSS---DELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILN 230 (453)
Q Consensus 154 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 230 (453)
+... .++..+-...+.+++..+.... ..+...+..... .++..+-...+.++.+.++ ..++..+-
T Consensus 98 ------l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~ 165 (280)
T PRK09687 98 ------LALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLI 165 (280)
T ss_pred ------HHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHH
Confidence 2111 3455555555555554432210 122222222221 2244444555555555554 34444444
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 039177 231 QMKSDGIKPDIVCYTMVLNGVIVQE-DYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKP 309 (453)
Q Consensus 231 ~m~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 309 (453)
.+.+. +|...-...+.++.+.+ +...+...+..+.. .++..+-...+.+.++.++. .+...+-...+.+
T Consensus 166 ~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~--- 235 (280)
T PRK09687 166 NLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG--- 235 (280)
T ss_pred HHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---
Confidence 44432 23333333444444332 12344444444443 24555555555666666653 3333333333321
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 310 DVITYNTLLQALCKVRELNRLRELVKEMKW 339 (453)
Q Consensus 310 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 339 (453)
+ .....+.+++..|.. +|...+..+.+
T Consensus 236 ~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 236 T--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred c--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 2 123455555555553 45555555554
No 341
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.96 E-value=56 Score=27.97 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=12.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCC
Q 039177 357 ASKGDIIEACGLLEEALNKGL 377 (453)
Q Consensus 357 ~~~g~~~~A~~~~~~m~~~~~ 377 (453)
+..+++.+|+++|++.....+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 345666666666666655443
No 342
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=73.69 E-value=14 Score=25.33 Aligned_cols=18 Identities=17% Similarity=0.139 Sum_probs=7.7
Q ss_pred HHHHHHHHHhcCCHHHHH
Q 039177 349 YSIMIDGLASKGDIIEAC 366 (453)
Q Consensus 349 ~~~li~~~~~~g~~~~A~ 366 (453)
+..|+.+|+..|++.+++
T Consensus 46 lG~l~qA~~e~Gkyr~~L 63 (80)
T PF10579_consen 46 LGYLIQAHMEWGKYREML 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 343
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=73.60 E-value=42 Score=26.32 Aligned_cols=49 Identities=10% Similarity=0.241 Sum_probs=22.1
Q ss_pred ChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 039177 275 DVYTYNVYINGLCKQNN-VEAGIKMIACMEELGSKPDVITYNTLLQALCK 323 (453)
Q Consensus 275 ~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 323 (453)
+...|.+++.+..+..- ---+..+|..|.+.+.+++..-|..+|.++.+
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 33444444444433333 22334444444444444555555555554444
No 344
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=72.78 E-value=44 Score=26.27 Aligned_cols=50 Identities=20% Similarity=0.341 Sum_probs=23.0
Q ss_pred cCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 219 KEKVFDALGILNQMKSDGIK-PDIVCYTMVLNGVIVQEDYVKAEELFDELLVL 270 (453)
Q Consensus 219 ~g~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 270 (453)
.++++++..+++.|.-..+. +...++...+ +...|++++|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence 45555555555555443111 1222222222 34455566666666555543
No 345
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=72.73 E-value=26 Score=26.56 Aligned_cols=47 Identities=15% Similarity=0.144 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 329 RLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNK 375 (453)
Q Consensus 329 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 375 (453)
+..+-++.+...++.|++....+-+++|-+-+++..|.++|+.++.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34444555555555666666666666666666666666666655443
No 346
>PRK11619 lytic murein transglycosylase; Provisional
Probab=71.93 E-value=1.2e+02 Score=30.87 Aligned_cols=225 Identities=6% Similarity=-0.085 Sum_probs=117.1
Q ss_pred ChHHHHHHHHHHHHcC-CCcC--hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 039177 186 SSDELLGFVQEMKKLG-FCFG--MVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEE 262 (453)
Q Consensus 186 ~~~~a~~~~~~~~~~g-~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 262 (453)
+.+.|..++....... +.+. ..++..+.......+...+|...++...... .|......-+......++++.+..
T Consensus 256 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~ 333 (644)
T PRK11619 256 DAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNT 333 (644)
T ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHH
Confidence 3367777777654332 2211 1223444333333332455666665543322 233344444555557888888888
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH------------CCCC--------CCH-H-----HHHH
Q 039177 263 LFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEE------------LGSK--------PDV-I-----TYNT 316 (453)
Q Consensus 263 ~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~------------~~~~--------p~~-~-----~~~~ 316 (453)
.+..|.... .-...-.--+..++...|+.++|...|+.+.. .|.. |.. . --..
T Consensus 334 ~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ 412 (644)
T PRK11619 334 WLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMA 412 (644)
T ss_pred HHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHH
Confidence 888775432 22333344566666667888888888887643 1111 000 0 0111
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CChhhHHHHHHHHHhC
Q 039177 317 LLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLC--TQSSMFDETICGLCQR 394 (453)
Q Consensus 317 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~ 394 (453)
-+..+...|....|...|..+... . +......+.....+.|..+.++.........+.. --+..|...+..+.+.
T Consensus 413 ra~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~ 489 (644)
T PRK11619 413 RVRELMYWNMDNTARSEWANLVAS-R--SKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSG 489 (644)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHH
Confidence 234556678888888888877765 2 4444555555566778777777665433221000 0011255556666555
Q ss_pred CCHHHHHHHHHHHhhCCCCCCH
Q 039177 395 GLVRKALELLKQMADKDVSPGA 416 (453)
Q Consensus 395 g~~~~A~~~~~~m~~~~~~p~~ 416 (453)
-.++.++-+---..+.++.|+.
T Consensus 490 ~~v~~~lv~ai~rqES~f~p~a 511 (644)
T PRK11619 490 KGIPQSYAMAIARQESAWNPKA 511 (644)
T ss_pred cCCCHHHHHHHHHHhcCCCCCC
Confidence 5555554332223345555543
No 347
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=71.75 E-value=79 Score=28.69 Aligned_cols=135 Identities=13% Similarity=0.070 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 039177 292 VEAGIKMIACMEELGS----KPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACG 367 (453)
Q Consensus 292 ~~~a~~~~~~m~~~~~----~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 367 (453)
.+.|.+.|+.....+. ..+......++....+.|+.+.-..+++..... .+...-..++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 5677788888776422 346666777777778888866655555555543 256677888888888888888888
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhCCCH--HHHHHHHHH----HhhCCCCCCHHHHHHHHhchhcchh
Q 039177 368 LLEEALNKGLCTQSSMFDETICGLCQRGLV--RKALELLKQ----MADKDVSPGARVWEALLLSSVSKLD 431 (453)
Q Consensus 368 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~----m~~~~~~p~~~~~~~ll~a~~~~~~ 431 (453)
+++.....+..+.... ..++.++...+.. +.+.+++.+ +. ..+..+...+..++..+.....
T Consensus 223 ~l~~~l~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~-~~~~~~~~~~~~~~~~~~~~~~ 290 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQDI-RYVLAGLASSNPVGRDLAWEFFKENWDAII-KKFGTNSSALSRVIKSFAGNFS 290 (324)
T ss_dssp HHHHHHCTSTS-TTTH-HHHHHHHH-CSTTCHHHHHHHHHHCHHHHH-CHC-TTSHCCHHHHHCCCTT--
T ss_pred HHHHHcCCcccccHHH-HHHHHHHhcCChhhHHHHHHHHHHHHHHHH-HHhcCCChHHHHHHHHHhccCC
Confidence 8888887642333333 3345555534433 666666554 32 2344444466777777655443
No 348
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=70.83 E-value=34 Score=24.03 Aligned_cols=13 Identities=23% Similarity=0.327 Sum_probs=4.9
Q ss_pred CCHHHHHHHHHHH
Q 039177 255 EDYVKAEELFDEL 267 (453)
Q Consensus 255 g~~~~a~~~~~~m 267 (453)
|+.+.|.+++..+
T Consensus 50 g~~~~ar~LL~~L 62 (88)
T cd08819 50 GNESGARELLKRI 62 (88)
T ss_pred CcHHHHHHHHHHh
Confidence 3333333333333
No 349
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=70.68 E-value=59 Score=30.99 Aligned_cols=124 Identities=7% Similarity=0.005 Sum_probs=81.8
Q ss_pred HHHhcCChhHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 039177 215 SLVKKEKVFDALG-ILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVE 293 (453)
Q Consensus 215 ~~~~~g~~~~a~~-~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~ 293 (453)
--...|++-.|-+ ++..+....-.|+.+...+ ..+...|+++.+.+.+....+. +-....+..+++....+.|+++
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHH
Confidence 3344566655544 4444544434455544443 3466778999988888776442 2345677788888888999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 039177 294 AGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGI 342 (453)
Q Consensus 294 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 342 (453)
+|..+-+-|....+. +...........-..|-++++...|+++...+.
T Consensus 375 ~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 375 EALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 999988888876665 454444444455566778888888888876543
No 350
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.59 E-value=1.2e+02 Score=30.27 Aligned_cols=192 Identities=8% Similarity=0.019 Sum_probs=97.8
Q ss_pred cchHHHHHHHHHHcCCCCCCHHHHHHHHH--H-HHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCccChHhH
Q 039177 96 FCDISSVLDHIEKRENFETPEFIFIDLIK--T-YADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCVDGKTC 172 (453)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~--~-~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 172 (453)
...+.+.++...+.+ . .........+. . +....+++.|+..|....+ -|......| +....
T Consensus 228 ~~~a~~~~~~~a~~g-~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~-----------~~~~~a~~~---~~~a~ 291 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG-H-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAE-----------SFKKAATKG---LPPAQ 291 (552)
T ss_pred hhHHHHHHHHHHhhc-c-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHH-----------HHHHHHhhc---CCccc
Confidence 345666666666652 1 11112222222 2 3345566777776665321 111122233 33345
Q ss_pred HHHHHHHHhcCCC---ChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 039177 173 SLILSSVCEQRDL---SSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVK-KEKVFDALGILNQMKSDGIKPDIVCYTMVL 248 (453)
Q Consensus 173 ~~ll~~~~~~~~~---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll 248 (453)
.-+..+|.+.... +...|+.++....+.| .|+....-..+..... ..+...|.++|....+.|.. +..-+..++
T Consensus 292 ~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~ 369 (552)
T KOG1550|consen 292 YGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALC 369 (552)
T ss_pred cHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHH
Confidence 5566666554322 2266888887777776 2333322222222222 24577899999988888754 222222222
Q ss_pred HHHH--hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 039177 249 NGVI--VQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGS 307 (453)
Q Consensus 249 ~~~~--~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 307 (453)
.... -..+...|..++++..+.| .|...--...+..+.. +..+.+.-.+..+...|.
T Consensus 370 y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 370 YELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 1111 2246788888888888877 3332222333344444 677777777777666554
No 351
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.97 E-value=63 Score=26.81 Aligned_cols=89 Identities=16% Similarity=0.099 Sum_probs=58.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 039177 283 INGLCKQNNVEAGIKMIACMEELGSKPDVITYNT-----LLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLA 357 (453)
Q Consensus 283 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-----li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 357 (453)
...+...+++++|...++..... |....+.. |.+.....|.+|+|+.+++.....+.. ......-.+.+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHH
Confidence 34467788888888888776652 33333333 344566778888888888776665332 122333456777
Q ss_pred hcCCHHHHHHHHHHHHHCC
Q 039177 358 SKGDIIEACGLLEEALNKG 376 (453)
Q Consensus 358 ~~g~~~~A~~~~~~m~~~~ 376 (453)
..|+-++|+.-|++..+.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 8888888888888887765
No 352
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=69.68 E-value=28 Score=28.87 Aligned_cols=32 Identities=28% Similarity=0.133 Sum_probs=16.2
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 343 VLNLQTYSIMIDGLASKGDIIEACGLLEEALN 374 (453)
Q Consensus 343 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 374 (453)
.|+..+|..++..+...|+.++|.+..+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555555555555555555554443
No 353
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=69.51 E-value=45 Score=27.29 Aligned_cols=48 Identities=8% Similarity=0.079 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHCCCCcC--HHHH-----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 327 LNRLRELVKEMKWKGIVLN--LQTY-----SIMIDGLASKGDIIEACGLLEEALN 374 (453)
Q Consensus 327 ~~~a~~~~~~~~~~~~~p~--~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~ 374 (453)
++.|+.+|+.+.+.-..|. .... ...+..|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 4556666666655432221 1111 1223345555555555555555544
No 354
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=69.46 E-value=9.9 Score=20.28 Aligned_cols=19 Identities=16% Similarity=0.265 Sum_probs=8.3
Q ss_pred HHHhCCCHHHHHHHHHHHh
Q 039177 390 GLCQRGLVRKALELLKQMA 408 (453)
Q Consensus 390 ~~~~~g~~~~A~~~~~~m~ 408 (453)
++.+.|++++|.+.|+++.
T Consensus 9 ~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHH
Confidence 3334444444444444443
No 355
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=69.44 E-value=33 Score=24.81 Aligned_cols=78 Identities=15% Similarity=0.096 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 039177 327 LNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQ 406 (453)
Q Consensus 327 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 406 (453)
.++|..|-+.+...+-. ...+--+=+..+...|++++|..+.+.. ..||...|..|- -.+.|..+++..-+.+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHHH
Confidence 45666665555554321 2222222233455666666666666544 245555544332 2355666666655555
Q ss_pred HhhCC
Q 039177 407 MADKD 411 (453)
Q Consensus 407 m~~~~ 411 (453)
|..+|
T Consensus 94 la~sg 98 (115)
T TIGR02508 94 LAASG 98 (115)
T ss_pred HHhCC
Confidence 55443
No 356
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=68.95 E-value=19 Score=24.68 Aligned_cols=51 Identities=16% Similarity=0.092 Sum_probs=36.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhCCCHHHHHHHH
Q 039177 353 IDGLASKGDIIEACGLLEEALNKGLCTQ--SSMFDETICGLCQRGLVRKALELL 404 (453)
Q Consensus 353 i~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~ 404 (453)
+..| ...+-++|+..|....++-..+. -.++..++.+|+..|++.+++++-
T Consensus 14 lkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 14 LKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3434 56778889999998887643332 235677889999999999988763
No 357
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=67.87 E-value=98 Score=28.25 Aligned_cols=117 Identities=15% Similarity=0.107 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh---cCCHHHHHHHHH
Q 039177 294 AGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLAS---KGDIIEACGLLE 370 (453)
Q Consensus 294 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~ 370 (453)
.-+.++++..+.+. -+....-.+|..+.+..+.++..+-|+.+...... +...|...|+.... .-.++....+|.
T Consensus 49 ~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 49 RKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 34445555444421 23445555555555555556666666666655333 44555555544333 123444444444
Q ss_pred HHHHC------CC------CCC-----hhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCC
Q 039177 371 EALNK------GL------CTQ-----SSMFDETICGLCQRGLVRKALELLKQMADKDV 412 (453)
Q Consensus 371 ~m~~~------~~------~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 412 (453)
+.... +. .+. ..++..+...+.++|..+.|+.+++-+.+..+
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 33221 10 000 11233334445677888888888888777554
No 358
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=67.82 E-value=26 Score=31.60 Aligned_cols=78 Identities=15% Similarity=0.083 Sum_probs=51.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH
Q 039177 284 NGLCKQNNVEAGIKMIACMEELGSKP-DVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDI 362 (453)
Q Consensus 284 ~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 362 (453)
+-|.+.|.+++|++.|..-.. +.| +.+++..-..+|.+...+..|+.=....+..+ ...+.+|.+.+..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KLYVKAYSRRMQA 174 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HHHHHHHHHHHHH
Confidence 468899999999999987776 345 77888888888988888887766555554431 2334555554444
Q ss_pred HHHHHHHHH
Q 039177 363 IEACGLLEE 371 (453)
Q Consensus 363 ~~A~~~~~~ 371 (453)
..++....+
T Consensus 175 R~~Lg~~~E 183 (536)
T KOG4648|consen 175 RESLGNNME 183 (536)
T ss_pred HHHHhhHHH
Confidence 443333333
No 359
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=67.50 E-value=54 Score=26.78 Aligned_cols=104 Identities=8% Similarity=-0.027 Sum_probs=50.0
Q ss_pred cchHHHHHHHHHHcCCCCCCHHHHHHHHHH---HHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCccCh-Hh
Q 039177 96 FCDISSVLDHIEKRENFETPEFIFIDLIKT---YADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCVDG-KT 171 (453)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~ 171 (453)
|+.|.+.++.....+ +.|...++.-..+ +++.....++.+++++ |+.-|++.+. +.|+. .+
T Consensus 7 FE~ark~aea~y~~n--P~DadnL~~WG~ALLELAqfk~g~es~~mied-----------AisK~eeAL~--I~P~~hdA 71 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN--PLDADNLTNWGGALLELAQFKQGPESKKMIED-----------AISKFEEALK--INPNKHDA 71 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHH-----------HHHHHHHHHH--H-TT-HHH
T ss_pred HHHHHHHHHHHHHhC--cHhHHHHHHHHHHHHHHHhccCcchHHHHHHH-----------HHHHHHHHHh--cCCchHHH
Confidence 455666666644443 4455544444333 4444555667777655 6666666665 35654 46
Q ss_pred HHHHHHHHHhcCCCCh---------HHHHHHHHHHHHcCCCcChhhHHHHHHHH
Q 039177 172 CSLILSSVCEQRDLSS---------DELLGFVQEMKKLGFCFGMVDYTNVIRSL 216 (453)
Q Consensus 172 ~~~ll~~~~~~~~~~~---------~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 216 (453)
+..+..++...+.+.. ++|...|+..... .|+..+|+.-+.+.
T Consensus 72 lw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 72 LWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 6666666654443211 2233333333332 35556665555554
No 360
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=66.79 E-value=13 Score=32.86 Aligned_cols=35 Identities=31% Similarity=0.378 Sum_probs=20.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 039177 349 YSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSM 383 (453)
Q Consensus 349 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 383 (453)
|+..|..-.+.|++++|++++++..+.|+..-..+
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~t 294 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARST 294 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHH
Confidence 34666666666666666666666666665443333
No 361
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=66.75 E-value=44 Score=30.26 Aligned_cols=92 Identities=16% Similarity=0.107 Sum_probs=58.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 039177 214 RSLVKKEKVFDALGILNQMKSDGIKP-DIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNV 292 (453)
Q Consensus 214 ~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~ 292 (453)
+-|.+.|.+++|+..|..-... .| |.+++..-..+|.+...+..|+.=-...+..+ ..-+..|..-+.+-...|..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 5688899999999999877764 34 78888888889999888887776555544321 01122333333333444555
Q ss_pred HHHHHHHHHHHHCCCCCC
Q 039177 293 EAGIKMIACMEELGSKPD 310 (453)
Q Consensus 293 ~~a~~~~~~m~~~~~~p~ 310 (453)
.+|.+=++...+ +.|+
T Consensus 182 ~EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 182 MEAKKDCETVLA--LEPK 197 (536)
T ss_pred HHHHHhHHHHHh--hCcc
Confidence 555555555555 3455
No 362
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=66.38 E-value=25 Score=21.36 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=20.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 039177 357 ASKGDIIEACGLLEEALNKGLCTQSSMFDETI 388 (453)
Q Consensus 357 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 388 (453)
.+.|-++++..++++|.+.|+..+...|..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34566666666677776666666666655544
No 363
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=66.18 E-value=2e+02 Score=31.15 Aligned_cols=91 Identities=14% Similarity=0.081 Sum_probs=51.0
Q ss_pred CCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 039177 308 KPDVITYNTLL----QALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSM 383 (453)
Q Consensus 308 ~p~~~~~~~li----~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 383 (453)
+|+...+..+. +-+.....+++|.-.|...-+. .--+.+|..+|+|.+|..+...+.... .--..+
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~-de~~~~ 1001 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEGK-DELVIL 1001 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCH-HHHHHH
Confidence 35555444444 4444567777777666544322 234667778888888888877663321 111112
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHh
Q 039177 384 FDETICGLCQRGLVRKALELLKQMA 408 (453)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~~~~~m~ 408 (453)
-..|+.-+...++.-+|-++..+..
T Consensus 1002 a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1002 AEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHHcccchhHHHHHHHHh
Confidence 2445666666666666666555543
No 364
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=65.82 E-value=1.7e+02 Score=30.39 Aligned_cols=224 Identities=16% Similarity=0.071 Sum_probs=122.6
Q ss_pred hcCCCChHHHHHHHHHHHHcCCCcCh-------hhHHHHHH-HHHhcCChhHHHHHHHHHHhC----CCCCCHHHHHHHH
Q 039177 181 EQRDLSSDELLGFVQEMKKLGFCFGM-------VDYTNVIR-SLVKKEKVFDALGILNQMKSD----GIKPDIVCYTMVL 248 (453)
Q Consensus 181 ~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~-~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~~~ll 248 (453)
...++ ++|..+..++...--.|+. ..|++|-. .....|++++|.++.+..... -..+....+..+.
T Consensus 427 s~~r~--~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 427 SQHRL--AEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HccCh--HHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34445 8888888887665322222 12444432 334568889998888777653 2344666777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH---HHH--HHHHhcCCHH--HHHHHHHHHHHC--CCC----CCHHHHH
Q 039177 249 NGVIVQEDYVKAEELFDELLVLGLVPDVYTYN---VYI--NGLCKQNNVE--AGIKMIACMEEL--GSK----PDVITYN 315 (453)
Q Consensus 249 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~---~li--~~~~~~~~~~--~a~~~~~~m~~~--~~~----p~~~~~~ 315 (453)
.+..-.|++++|..+..+..+..-.-+...+. .+. ..+...|+.. +....|...... +-+ +-.-++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 88888899999998888776543233444332 222 2245566332 222333333221 011 2234556
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHHCCCCcCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHH---HH
Q 039177 316 TLLQALCKVRE-LNRLRELVKEMKWKGIVLNLQTY--SIMIDGLASKGDIIEACGLLEEALNKGLCTQ-SSMFDE---TI 388 (453)
Q Consensus 316 ~li~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~---li 388 (453)
.++.++.+... ..++..-+.........|-...+ ..|+..+...|++++|...++++......+. ..-|.+ .+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 66666666221 22222223222223333222222 3677888889999999999999876533332 111222 22
Q ss_pred H--HHHhCCCHHHHHHHHHH
Q 039177 389 C--GLCQRGLVRKALELLKQ 406 (453)
Q Consensus 389 ~--~~~~~g~~~~A~~~~~~ 406 (453)
. -....|+.+++.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 2 22356787777776666
No 365
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=65.47 E-value=7.2 Score=29.77 Aligned_cols=30 Identities=17% Similarity=0.155 Sum_probs=20.5
Q ss_pred CcHHHHHHHHHHHHHCCCccChHhHHHHHHHH
Q 039177 148 NRVGFAIEILNCMINDGFCVDGKTCSLILSSV 179 (453)
Q Consensus 148 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 179 (453)
|.-..|..+|..|+..|.+||. |+.|+..+
T Consensus 109 gsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 4455567777778888888876 66666543
No 366
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=65.32 E-value=14 Score=18.76 Aligned_cols=25 Identities=16% Similarity=0.056 Sum_probs=13.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHh
Q 039177 384 FDETICGLCQRGLVRKALELLKQMA 408 (453)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~~~~~m~ 408 (453)
|..+...+...|++++|...++...
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344445555555555555555544
No 367
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=65.16 E-value=1.1e+02 Score=27.77 Aligned_cols=109 Identities=16% Similarity=0.038 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHCCC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 039177 257 YVKAEELFDELLVLGL----VPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRE 332 (453)
Q Consensus 257 ~~~a~~~~~~m~~~g~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 332 (453)
...|.+.|+.....+. ..+......++....+.|..+.-..+++..... .+...-..++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 4567788888777422 345556666777777888866655666665542 577788899999999999999999
Q ss_pred HHHHHHHCC-CCcCHHHHHHHHHHHHhcCC--HHHHHHHHH
Q 039177 333 LVKEMKWKG-IVLNLQTYSIMIDGLASKGD--IIEACGLLE 370 (453)
Q Consensus 333 ~~~~~~~~~-~~p~~~~~~~li~~~~~~g~--~~~A~~~~~ 370 (453)
+++.+...+ +. +... ..++.++...+. .+.+++.+.
T Consensus 223 ~l~~~l~~~~v~-~~d~-~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 223 LLDLLLSNDKVR-SQDI-RYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHCTSTS--TTTH-HHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHcCCcccc-cHHH-HHHHHHHhcCChhhHHHHHHHHH
Confidence 999888864 44 3333 344445543333 366666654
No 368
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=64.96 E-value=1.6e+02 Score=29.75 Aligned_cols=195 Identities=15% Similarity=0.112 Sum_probs=106.7
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHH-hCCCCC--CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCChh--
Q 039177 204 FGMVDYTNVIRSLVKKEKVFDALGILNQMK-SDGIKP--DIVCYTMVLNGVI-VQEDYVKAEELFDELLVLGLVPDVY-- 277 (453)
Q Consensus 204 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~~~~~--~~~~~~~ll~~~~-~~g~~~~a~~~~~~m~~~g~~~~~~-- 277 (453)
.+...|..||.+ |++.++.+. +..+.| +..++--+...+. ...+++.|+..+++.....-.++..
T Consensus 28 ~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 28 EQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 445556666654 444455555 333333 3334444555554 6678888888888765432222211
Q ss_pred ---hHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCcCH
Q 039177 278 ---TYNVYINGLCKQNNVEAGIKMIACMEEL----GSKPDVITYNTL-LQALCKVRELNRLRELVKEMKWKG---IVLNL 346 (453)
Q Consensus 278 ---~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~---~~p~~ 346 (453)
.-..++..+.+.+... |...++..++. +..+-...|..+ +..+...++...|.+.++.+...- ..|..
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 1234556666666555 87777776542 111222344444 333334478888888888776642 33344
Q ss_pred HHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCC---------CCChhhHHHHHHH--HHhCCCHHHHHHHHHHHh
Q 039177 347 QTYSIMIDGLA--SKGDIIEACGLLEEALNKGL---------CTQSSMFDETICG--LCQRGLVRKALELLKQMA 408 (453)
Q Consensus 347 ~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~---------~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~ 408 (453)
.++-.++.+.. +.+..+++.+.++.+..... .|...+|..++.. +...|+++.+...++++.
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555555544 45656777777776643211 3345556666554 456677666666555543
No 369
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=64.39 E-value=47 Score=23.33 Aligned_cols=14 Identities=29% Similarity=0.342 Sum_probs=5.6
Q ss_pred CCHHHHHHHHHHHH
Q 039177 325 RELNRLRELVKEMK 338 (453)
Q Consensus 325 ~~~~~a~~~~~~~~ 338 (453)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 33344444444333
No 370
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=64.35 E-value=1e+02 Score=27.27 Aligned_cols=35 Identities=20% Similarity=0.154 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHH----HhhCCCCCCHHHHH
Q 039177 386 ETICGLCQRGLVRKALELLKQ----MADKDVSPGARVWE 420 (453)
Q Consensus 386 ~li~~~~~~g~~~~A~~~~~~----m~~~~~~p~~~~~~ 420 (453)
-+|..+.+.|.+.+|+.+++. +++.+-+|+..+..
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Confidence 346677777777777765443 33344455544433
No 371
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=63.48 E-value=96 Score=31.03 Aligned_cols=128 Identities=9% Similarity=0.076 Sum_probs=75.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCCcCHHHHHHH
Q 039177 281 VYINGLCKQNNVEAGIKMIACMEELG--SKPDVITYNTLLQALCKVRELN------RLRELVKEMKWKGIVLNLQTYSIM 352 (453)
Q Consensus 281 ~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~~~~~------~a~~~~~~~~~~~~~p~~~~~~~l 352 (453)
+++.+|..+|++..+.++++.....+ -+.=...||..|+...+.|.++ .|.+.++.. .+.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 78999999999999999999887642 2223457888888888988764 233333333 355578888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH--HHhCCCHHHHHHHHHHHhh--CCCCCCHHH
Q 039177 353 IDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICG--LCQRGLVRKALELLKQMAD--KDVSPGARV 418 (453)
Q Consensus 353 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~--~~~~p~~~~ 418 (453)
+++-..--.-.-..-++.+..... .|-++.. +...=.+++..-+++++.- ..+.|+..-
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~~s-------~ngv~di~~~~~v~s~~ev~limd~l~i~~~n~~ps~l~ 172 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIHRS-------ANGVIDILMHESVFSPEEVKLIMDQLNIPINNFTPSQLQ 172 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHHhh-------hhhHHHHHhhhccCCHHHHHHHHHhcCCCCCCCCcchhh
Confidence 877655333333344444444321 1112222 2223346666666666531 234455443
No 372
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=63.44 E-value=14 Score=24.06 Aligned_cols=46 Identities=22% Similarity=0.213 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 039177 362 IIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMAD 409 (453)
Q Consensus 362 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (453)
++...++++.+... .-|-.-.-.+|.+|...|++++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444444444332 11222233457888888888888888877753
No 373
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=63.20 E-value=45 Score=27.64 Aligned_cols=55 Identities=15% Similarity=0.038 Sum_probs=40.6
Q ss_pred hcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCC
Q 039177 358 SKGDIIEACGLLEEALNK-GLCTQSSMFDETICGLCQRGLVRKALELLKQMADKDVSP 414 (453)
Q Consensus 358 ~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 414 (453)
..++.+......+.+.+. ...|+..+|..++.++...|+.++|.++.+++. .+-|
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~--~lyP 175 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARAR--RLYP 175 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCC
Confidence 445555444444443332 457999999999999999999999999999998 4466
No 374
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.51 E-value=1.3e+02 Score=27.72 Aligned_cols=231 Identities=12% Similarity=0.081 Sum_probs=115.4
Q ss_pred cChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCCCHH
Q 039177 167 VDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKS----DGIKPDIV 242 (453)
Q Consensus 167 p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~~~~ 242 (453)
|+..+.-.++.-+....+. +....+-... ..+++.+-.++.+.+.....++...+... ..-..+ .
T Consensus 73 ~~~~~li~~~~~FV~~~n~--eqlr~as~~f--------~~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~qlT-~ 141 (422)
T KOG2582|consen 73 PDPETLIELLNDFVDENNG--EQLRLASEIF--------FPLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNGQLT-S 141 (422)
T ss_pred CCHHHHHHHHHHHHHhcCh--HHHhhHHHHH--------HHHHHHHHHHHHhcCCccccchHHHHHHHHhccCccchh-h
Confidence 5556666666666555553 2222111000 22345555566655555444333333322 211111 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH-H----CCCCCChhhHHHHHH---HHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 039177 243 CYTMVLNGVIVQEDYVKAEELFDELL-V----LGLVPDVYTYNVYIN---GLCKQNNVEAGIKMIACMEELGSKPDVITY 314 (453)
Q Consensus 243 ~~~~ll~~~~~~g~~~~a~~~~~~m~-~----~g~~~~~~~~~~li~---~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 314 (453)
....++..+.+.+++..+...++.-. + .+..+....+.-... .|...++++.|..+|+..... |....-
T Consensus 142 ~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~---Pa~~vs 218 (422)
T KOG2582|consen 142 IHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVTT---PAMAVS 218 (422)
T ss_pred hHHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHhc---chhHHH
Confidence 23345556666666655554443221 1 111111111111111 134567899999998888762 443333
Q ss_pred HHHHHHH--------HhcCCH--------HHHHHHHHHHHH-------CCCCcCHHHHHHHHH----HHHhcCCHHHHHH
Q 039177 315 NTLLQAL--------CKVREL--------NRLRELVKEMKW-------KGIVLNLQTYSIMID----GLASKGDIIEACG 367 (453)
Q Consensus 315 ~~li~~~--------~~~~~~--------~~a~~~~~~~~~-------~~~~p~~~~~~~li~----~~~~~g~~~~A~~ 367 (453)
...+.+| .-.|+. ..|.+.++.|.. .-..-......++|. .+.+-++..-|..
T Consensus 219 ~~hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K~ms~pY~ef~~~Y~~~~~~eLr~lVk~~~~rF~kDnnt~l~k~ 298 (422)
T KOG2582|consen 219 HIHLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFKPMSNPYHEFLNVYLKDSSTELRTLVKKHSERFTKDNNTGLAKQ 298 (422)
T ss_pred HHHHHHHHHHHHHHhhhcCceeeccccchhhhHHhcccCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcCcHHHHHH
Confidence 3333333 334443 233444433321 000001111334443 2445677777888
Q ss_pred HHHHHHHCCCCCChhhHHHH----HHHHHhCCCHHHHHHHHHHHhhCC
Q 039177 368 LLEEALNKGLCTQSSMFDET----ICGLCQRGLVRKALELLKQMADKD 411 (453)
Q Consensus 368 ~~~~m~~~~~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~~ 411 (453)
....+..+++..+..+|.+| |...++.+..++|.+..-+|.+.|
T Consensus 299 av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 299 AVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 88888888888888888877 344456788899999888888764
No 375
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.50 E-value=2.1e+02 Score=30.17 Aligned_cols=127 Identities=10% Similarity=0.009 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhhcccCC---CCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHH
Q 039177 118 IFIDLIKTYADAHRFQDSVNLFYKIPKFR---INRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFV 194 (453)
Q Consensus 118 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~ 194 (453)
-|..|+..|...|..++|++++.+..... ........+-..+....-..++....-....-.. ..+. +.+.++|
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl-~~~p--~~gi~If 582 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVL-NKNP--EAGIQIF 582 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhh-ccCc--hhheeee
Confidence 57789999999999999999998866532 1111111111111111111222211111111111 1111 4455555
Q ss_pred HH---HHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 039177 195 QE---MKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIV 253 (453)
Q Consensus 195 ~~---~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 253 (453)
.. -....+.++ .+-.|......+-++.+++.+....-.++....+.++..|+.
T Consensus 583 t~~~~~~~~sis~~------~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 583 TSEDKQEAESISRD------DVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred eccChhhhccCCHH------HHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 44 011112221 223455566677777777777765555566666666666654
No 376
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=62.40 E-value=1.7e+02 Score=28.95 Aligned_cols=345 Identities=11% Similarity=0.059 Sum_probs=161.2
Q ss_pred CCCCChhhHHHHHHHHHh-cCCcchHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHH
Q 039177 75 NCEPPPEAYHFVIKTLAE-NSQFCDISSVLDHIEKRENFE-TPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGF 152 (453)
Q Consensus 75 ~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 152 (453)
+++.+...|...+.-+.. .|+.+...+.|+.....-|.. .....|...|..-..++++.....+|+++.+.....+..
T Consensus 108 aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~ 187 (577)
T KOG1258|consen 108 AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNR 187 (577)
T ss_pred hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHH
Confidence 444555555554444333 566666667777766554432 233466777777777777777777777766655444444
Q ss_pred HHHHHHHHHHCCCc---cChHhHHHHHHHHHh---cCCCChHHHHHHHHHHHHcCCCcChhh--HHHH-------HHHHH
Q 039177 153 AIEILNCMINDGFC---VDGKTCSLILSSVCE---QRDLSSDELLGFVQEMKKLGFCFGMVD--YTNV-------IRSLV 217 (453)
Q Consensus 153 a~~~~~~m~~~~~~---p~~~~~~~ll~~~~~---~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~l-------i~~~~ 217 (453)
-..-|.+.....-. .+...+..+-..-+. ..... ..+..+=..+...+-+.+..+ .+.+ -.+|-
T Consensus 188 ~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~-~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~ 266 (577)
T KOG1258|consen 188 HFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQ-EPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQ 266 (577)
T ss_pred HHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhccccc-ChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHH
Confidence 44444443332100 011111111111111 00000 001111111111111111111 1111 11122
Q ss_pred hcCChhHHHHHHHHHHhC---CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 039177 218 KKEKVFDALGILNQMKSD---GI----KPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQN 290 (453)
Q Consensus 218 ~~g~~~~a~~~~~~m~~~---~~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 290 (453)
...........|+.-.+. .+ .++..+|..-+.--...|+.+.+.-+|+...-.- ..=...|--.+......|
T Consensus 267 ~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~ 345 (577)
T KOG1258|consen 267 KSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSG 345 (577)
T ss_pred hhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcC
Confidence 222222333333333321 12 2245677777777788888888888888775411 111233444444444558
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHhcCCHHHHH---
Q 039177 291 NVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQ-TYSIMIDGLASKGDIIEAC--- 366 (453)
Q Consensus 291 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~--- 366 (453)
+.+.|..++....+--++-...+--.-...+-..|+++.|..+++.+...- |+.. .-..-+....+.|..+.+.
T Consensus 346 ~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~ 423 (577)
T KOG1258|consen 346 DVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKN 423 (577)
T ss_pred chhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHH
Confidence 888887777665553332222221111122334678888888888887763 3322 2222334445667777766
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHH-----HHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHhch
Q 039177 367 GLLEEALNKGLCTQSSMFDETICG-----LCQRGLVRKALELLKQMADKDVSPGARVWEALLLSS 426 (453)
Q Consensus 367 ~~~~~m~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~ 426 (453)
.+...... | .-+..+...+..- +.-.++.+.|..++.++.+. +.++...|..++.-+
T Consensus 424 ~l~s~~~~-~-~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~ 485 (577)
T KOG1258|consen 424 ELYSSIYE-G-KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFE 485 (577)
T ss_pred HHHHHhcc-c-ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHH
Confidence 33333222 1 2222223333222 33457788888888888743 344555555565544
No 377
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=61.57 E-value=1.3e+02 Score=27.46 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=18.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCC
Q 039177 354 DGLASKGDIIEACGLLEEALNKGL 377 (453)
Q Consensus 354 ~~~~~~g~~~~A~~~~~~m~~~~~ 377 (453)
.....+|..+.|..+|+.+.+.++
T Consensus 162 ~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 162 RFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHCCchHHHHHHHHHHHHHHc
Confidence 334568888999999988888765
No 378
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=60.73 E-value=1.2e+02 Score=26.86 Aligned_cols=124 Identities=14% Similarity=0.156 Sum_probs=65.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHH----HHCCCCCChhhHHHH
Q 039177 214 RSLVKKEKVFDALGILNQMKSDGIKPDIV-------CYTMVLNGVIVQEDYVKAEELFDEL----LVLGLVPDVYTYNVY 282 (453)
Q Consensus 214 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------~~~~ll~~~~~~g~~~~a~~~~~~m----~~~g~~~~~~~~~~l 282 (453)
+-..+.+++++|+..+.++...|+..|.. +...+...|...|+....-+..... .+..-........++
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtL 90 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTL 90 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHH
Confidence 34455667777777777777766655543 3334556666666665444333322 111111223344455
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039177 283 INGLCKQ-NNVEAGIKMIACMEELGSKPDV-----ITYNTLLQALCKVRELNRLRELVKEM 337 (453)
Q Consensus 283 i~~~~~~-~~~~~a~~~~~~m~~~~~~p~~-----~~~~~li~~~~~~~~~~~a~~~~~~~ 337 (453)
|..+-.. ..++....+.....+...+-.. ..=.-++..+.+.|.+.+|+.+...+
T Consensus 91 iekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 91 IEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 5544332 2355555555554442211111 12245678888999999988766544
No 379
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=60.57 E-value=97 Score=25.66 Aligned_cols=50 Identities=18% Similarity=0.188 Sum_probs=26.6
Q ss_pred HhCCCHHHHHHHHHHHhhCCCCCCHHHH---HHHHhchhcchhhHHHHHHHHHHh
Q 039177 392 CQRGLVRKALELLKQMADKDVSPGARVW---EALLLSSVSKLDFVNTSFIRLVDQ 443 (453)
Q Consensus 392 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~---~~ll~a~~~~~~~~~~~~~~~~~~ 443 (453)
.+.|+++.|.++++-|.+ +.-+..++ ..+.....++.|-+...+.+....
T Consensus 132 l~~~~~~~Ae~~~~~ME~--lY~~Lm~fdyP~~l~~~LR~K~Dvar~~lekt~~d 184 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK--LYEELMEFDYPKALVPGLRQKQDVARSLLEKTKSD 184 (204)
T ss_pred HHhccHHHHHHHHHHHHH--HHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 466888888888888873 22111111 223334445555555555444433
No 380
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=59.88 E-value=2.1e+02 Score=29.30 Aligned_cols=119 Identities=19% Similarity=0.229 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHcCCCcCh---hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH----------HHHHHHHHHHhc
Q 039177 188 DELLGFVQEMKKLGFCFGM---VDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIV----------CYTMVLNGVIVQ 254 (453)
Q Consensus 188 ~~a~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----------~~~~ll~~~~~~ 254 (453)
++....+.+|...--.|++ .+...++-.|....+++..+++.+.++.. ||.. .|.-.++---+-
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~ 256 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRP 256 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCC
Confidence 5566677777766434443 34556677777888888888888888763 3221 222233333355
Q ss_pred CCHHHHHHHHHHHHHC-C-CCCChhh-----HHH--HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 039177 255 EDYVKAEELFDELLVL-G-LVPDVYT-----YNV--YINGLCKQNNVEAGIKMIACMEELGSKPDV 311 (453)
Q Consensus 255 g~~~~a~~~~~~m~~~-g-~~~~~~~-----~~~--li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 311 (453)
|+-++|+.+.-.+.+. | +.||..- |.- +-+.|-..+..+.|.+.|++..+ +.|+.
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~ 320 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLE 320 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchh
Confidence 7778888777666553 2 3344321 111 11223445556667777776665 34544
No 381
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=59.76 E-value=35 Score=22.16 Aligned_cols=24 Identities=29% Similarity=0.234 Sum_probs=12.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 039177 350 SIMIDGLASKGDIIEACGLLEEAL 373 (453)
Q Consensus 350 ~~li~~~~~~g~~~~A~~~~~~m~ 373 (453)
-.+|.+|...|++++|.++++++.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344555555555555555555443
No 382
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=59.18 E-value=1.2e+02 Score=29.85 Aligned_cols=152 Identities=12% Similarity=-0.039 Sum_probs=86.8
Q ss_pred ccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 039177 166 CVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYT 245 (453)
Q Consensus 166 ~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 245 (453)
-|+..+.-.++.-....--.+.+.+..++..| +.-+.|--.+.|...-.+.-.|+...|.+.+.......+.-..+...
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~-~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v 646 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAI-NKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLV 646 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHh-cCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHH
Confidence 35555555555443322211113333344333 33223433333433333444688888888877766543333344455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 039177 246 MVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQA 320 (453)
Q Consensus 246 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 320 (453)
.|.+...+.|...+|..++.+.+... ....-++-.+.++|....+++.|++-|++..+...+ +.++-+.|...
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~~i 719 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTK-CPECENSLKLI 719 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC-ChhhHHHHHHH
Confidence 56667777777778888777766544 344566677788888888889999888887775422 34444554443
No 383
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=59.07 E-value=1.1e+02 Score=25.68 Aligned_cols=87 Identities=17% Similarity=0.060 Sum_probs=39.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 039177 286 LCKQNNVEAGIKMIACMEELGSKPD------VITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASK 359 (453)
Q Consensus 286 ~~~~~~~~~a~~~~~~m~~~~~~p~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 359 (453)
+.+.|++++|..-|...+.. .|. ...|..-..++.+.+.++.|+.--...++.+.. .......-..+|.+.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 45566666666666555553 121 122333334445555555555544444444222 111222222345555
Q ss_pred CCHHHHHHHHHHHHHC
Q 039177 360 GDIIEACGLLEEALNK 375 (453)
Q Consensus 360 g~~~~A~~~~~~m~~~ 375 (453)
.++++|+.=+.++.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 5555555555555444
No 384
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=58.83 E-value=1.1e+02 Score=25.66 Aligned_cols=92 Identities=20% Similarity=0.142 Sum_probs=64.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh
Q 039177 249 NGVIVQEDYVKAEELFDELLVLGLVPD----VYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDV-ITYNTLLQALCK 323 (453)
Q Consensus 249 ~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~ 323 (453)
+-+.++|++++|..-|...+....... ...|..-..++.+.+.++.|++-....++.+ |+. .....-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHh
Confidence 457788999999999999888542221 2234444556778888888888777777744 432 233333457888
Q ss_pred cCCHHHHHHHHHHHHHCCC
Q 039177 324 VRELNRLRELVKEMKWKGI 342 (453)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~~ 342 (453)
...+++|+.=|+.+.+..+
T Consensus 181 ~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDP 199 (271)
T ss_pred hhhHHHHHHHHHHHHHhCc
Confidence 8999999999999888743
No 385
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.45 E-value=1.3e+02 Score=26.43 Aligned_cols=174 Identities=13% Similarity=0.083 Sum_probs=97.5
Q ss_pred cCCCcChhhHHHHHHHH-HhcCChhHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHH---CCC
Q 039177 200 LGFCFGMVDYTNVIRSL-VKKEKVFDALGILNQMKSDGIKPDIV---CYTMVLNGVIVQEDYVKAEELFDELLV---LGL 272 (453)
Q Consensus 200 ~g~~~~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~~~g~~~~a~~~~~~m~~---~g~ 272 (453)
.+-+||+..-|..-.+- .+..++++|+.-|++..+........ +...++..+.+.|++++....|.+++- +.+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 34456665544332211 23346788888888887753333333 334567778888888888888888753 211
Q ss_pred --CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--
Q 039177 273 --VPDVYTYNVYINGLCKQNNVEAGIKMIACMEEL-GSKPDV----ITYNTLLQALCKVRELNRLRELVKEMKWKGIV-- 343 (453)
Q Consensus 273 --~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-- 343 (453)
.-+....|+++.....+.+.+...+.|+.-.+. .-.-+. .|-+-|...|...+++.+..++++++...--.
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 234556777777777677777666666543321 000111 13345666667777777777777776654111
Q ss_pred --cC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039177 344 --LN-------LQTYSIMIDGLASKGDIIEACGLLEEAL 373 (453)
Q Consensus 344 --p~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~ 373 (453)
-| ...|..=|++|....+-..-..+++...
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 01 2344445555555555555555555443
No 386
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=58.07 E-value=1.9e+02 Score=28.15 Aligned_cols=58 Identities=9% Similarity=0.132 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHCCCC-CChhhHHHHHH----HHHhc---CCHHHHHHHHHHHHHCCCCCCHHHH
Q 039177 257 YVKAEELFDELLVLGLV-PDVYTYNVYIN----GLCKQ---NNVEAGIKMIACMEELGSKPDVITY 314 (453)
Q Consensus 257 ~~~a~~~~~~m~~~g~~-~~~~~~~~li~----~~~~~---~~~~~a~~~~~~m~~~~~~p~~~~~ 314 (453)
....++++..+.+.+.. ++......++. .|.+. .+++.+..+|+.+...|.-|+....
T Consensus 151 l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~ 216 (464)
T PF11864_consen 151 LSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS 216 (464)
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH
Confidence 44445555555554322 34333333333 22222 2455667777777777776655433
No 387
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=57.82 E-value=91 Score=24.49 Aligned_cols=68 Identities=10% Similarity=0.102 Sum_probs=50.1
Q ss_pred HHHHHHHhhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChh
Q 039177 64 LSSLLHSFSIYNCEPPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQ 133 (453)
Q Consensus 64 ~~~ll~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 133 (453)
...+...++..|.++++.- ..+++.+...++.-.|.++|+.+.+. +...+..+.-.-++.+...|-+.
T Consensus 5 ~~~~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~-~p~islaTVYr~L~~l~e~Glv~ 72 (145)
T COG0735 5 LEDAIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREE-GPGISLATVYRTLKLLEEAGLVH 72 (145)
T ss_pred HHHHHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHh-CCCCCHhHHHHHHHHHHHCCCEE
Confidence 4556677888888887754 45777888888889999999999987 44555555556667888877543
No 388
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.86 E-value=1.4e+02 Score=26.27 Aligned_cols=214 Identities=12% Similarity=0.152 Sum_probs=116.1
Q ss_pred cCCCCChhhHHHHHHH-HHhcCCcchHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcH
Q 039177 74 YNCEPPPEAYHFVIKT-LAENSQFCDISSVLDHIEKRENFETP--EFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRV 150 (453)
Q Consensus 74 ~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 150 (453)
.+.+||...-+..-.+ -.+...+++|+.-|....+-.|-..+ -...--+|..+.+.|++++..+.|.++.
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL------- 92 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL------- 92 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH-------
Confidence 4556666554443322 12345777888888888776442211 2233446777777787777777665533
Q ss_pred HHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHc-CCCcCh----hhHHHHHHHHHhcCChhHH
Q 039177 151 GFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKL-GFCFGM----VDYTNVIRSLVKKEKVFDA 225 (453)
Q Consensus 151 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~-g~~~~~----~~~~~li~~~~~~g~~~~a 225 (453)
.+.......+ -+..+.|+++.-.+...+. +....+++.-.+. .-..+. .|-.-|...|...+++.+.
T Consensus 93 ----TYIkSAVTrN--ySEKsIN~IlDyiStS~~m--~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl 164 (440)
T KOG1464|consen 93 ----TYIKSAVTRN--YSEKSINSILDYISTSKNM--DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKL 164 (440)
T ss_pred ----HHHHHHHhcc--ccHHHHHHHHHHHhhhhhh--HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHH
Confidence 2223233222 2455677777766666665 4444444432221 001111 2234667778888888888
Q ss_pred HHHHHHHHhCCCCC----C-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHH-----Hh
Q 039177 226 LGILNQMKSDGIKP----D-------IVCYTMVLNGVIVQEDYVKAEELFDELLVL-GLVPDVYTYNVYINGL-----CK 288 (453)
Q Consensus 226 ~~~~~~m~~~~~~~----~-------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~-----~~ 288 (453)
.+++.++...-..- | ...|..=|..|....+-.....+|++.+.. ...|.+.... +|+-| .+
T Consensus 165 ~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlr 243 (440)
T KOG1464|consen 165 QKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLR 243 (440)
T ss_pred HHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccc
Confidence 88887776542111 1 235666677777777777777777766432 1124333332 33333 34
Q ss_pred cCCHHHHH-HHHHHHH
Q 039177 289 QNNVEAGI-KMIACME 303 (453)
Q Consensus 289 ~~~~~~a~-~~~~~m~ 303 (453)
.|++++|- +.|+...
T Consensus 244 eg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 244 EGEFEKAHTDFFEAFK 259 (440)
T ss_pred cchHHHHHhHHHHHHh
Confidence 56666664 3444443
No 389
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=56.07 E-value=74 Score=31.75 Aligned_cols=90 Identities=19% Similarity=0.190 Sum_probs=60.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHhcCCHHH------HHHHHHHHHHCCCCCChhhHHHH
Q 039177 316 TLLQALCKVRELNRLRELVKEMKWK--GIVLNLQTYSIMIDGLASKGDIIE------ACGLLEEALNKGLCTQSSMFDET 387 (453)
Q Consensus 316 ~li~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~------A~~~~~~m~~~~~~~~~~~~~~l 387 (453)
+|+.+|...|++..+.++++..... |-+.=...||..|+.+.+.|.++- |.++++.. .+.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 7899999999999999999988776 333345678888888888887652 34444433 355577888877
Q ss_pred HHHHHhCCCHHHHHHHHHHHh
Q 039177 388 ICGLCQRGLVRKALELLKQMA 408 (453)
Q Consensus 388 i~~~~~~g~~~~A~~~~~~m~ 408 (453)
+.+-..--+..-..-++.+.+
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 776555333333334444444
No 390
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=55.11 E-value=79 Score=22.98 Aligned_cols=85 Identities=16% Similarity=0.099 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039177 188 DELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDEL 267 (453)
Q Consensus 188 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 267 (453)
++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+.+ ..||...|-+|.. .+.|..+.+..-+..|
T Consensus 22 qEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rl 94 (115)
T TIGR02508 22 QEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRL 94 (115)
T ss_pred HHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 5566555555444311 1112222234566777888887776655 3667777766543 3556666666666666
Q ss_pred HHCCCCCChhhHH
Q 039177 268 LVLGLVPDVYTYN 280 (453)
Q Consensus 268 ~~~g~~~~~~~~~ 280 (453)
..+| .|....|.
T Consensus 95 a~sg-~p~lq~Fa 106 (115)
T TIGR02508 95 AASG-DPRLQTFV 106 (115)
T ss_pred HhCC-CHHHHHHH
Confidence 6665 34444443
No 391
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=54.95 E-value=22 Score=22.26 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=19.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 039177 387 TICGLCQRGLVRKALELLKQMADKDVSPGARVWEALL 423 (453)
Q Consensus 387 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 423 (453)
+..++.+.|++++|.++.+.+. .+.|+-.-...|-
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL--~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALL--EIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH--HHTTS-HHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHH--hhCCCcHHHHHHH
Confidence 3446666677777777766666 3455554444443
No 392
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=54.87 E-value=57 Score=22.83 Aligned_cols=44 Identities=16% Similarity=0.177 Sum_probs=31.8
Q ss_pred HHHHHhhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 039177 66 SLLHSFSIYNCEPPPEAYHFVIKTLAENSQFCDISSVLDHIEKR 109 (453)
Q Consensus 66 ~ll~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 109 (453)
++++.....|+..|+..|..++..+.-+=.++...++++.|...
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 66777777777778777777777777666666667777776654
No 393
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=54.82 E-value=26 Score=31.09 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=33.2
Q ss_pred CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 039177 307 SKPDVI-TYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTY 349 (453)
Q Consensus 307 ~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 349 (453)
+.||.. .|+..|....+.|++++|++++++..+.|..--..+|
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 345655 5678999999999999999999999998876444444
No 394
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=54.45 E-value=85 Score=28.11 Aligned_cols=58 Identities=14% Similarity=0.126 Sum_probs=43.9
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 039177 296 IKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLAS 358 (453)
Q Consensus 296 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 358 (453)
.++++.+.+.++.|.-..+.-+.-.+.+.=.+.+++.+|+.+... ..-|..|+..|+.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHH
Confidence 467888888888888888888888888888888888888888764 3336666666653
No 395
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=54.02 E-value=1.2e+02 Score=24.82 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 039177 292 VEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGI 342 (453)
Q Consensus 292 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 342 (453)
+++|.+.|+.... ..|+..+|+.-+..+ ++|-.++.++.+.+.
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHHHh
Confidence 4455555555554 347777777777665 345666666666543
No 396
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=53.55 E-value=1.8e+02 Score=26.48 Aligned_cols=47 Identities=11% Similarity=0.106 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCccChHhHHHHHH
Q 039177 117 FIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCVDGKTCSLILS 177 (453)
Q Consensus 117 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 177 (453)
..+-.....|++-|+.+.|.+.+.+ .++.....|.+.|...+..-+.
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~--------------t~~ktvs~g~kiDVvf~~iRlg 151 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRK--------------TYEKTVSLGHKIDVVFYKIRLG 151 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHH--------------HHHHHhhcccchhhHHHHHHHH
Confidence 4455556667777777777666654 2333445566666655444333
No 397
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=53.46 E-value=1.3e+02 Score=24.95 Aligned_cols=176 Identities=13% Similarity=0.067 Sum_probs=92.8
Q ss_pred cCCCCChhhHHHHHHHHHhcCCcc----hHHHHHHHHHHcCCCCC----CHHHHHHHHHHHHhcCChhHHHHHHhhcccC
Q 039177 74 YNCEPPPEAYHFVIKTLAENSQFC----DISSVLDHIEKRENFET----PEFIFIDLIKTYADAHRFQDSVNLFYKIPKF 145 (453)
Q Consensus 74 ~~~~p~~~~~~~ll~~~~~~~~~~----~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 145 (453)
.|..+++..++.++..+.+..-.. .+..+=.+...+ ++.. +......=+..|-+.|++.+--.+|-.+...
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~-~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~g 80 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQAR-QFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMG 80 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhh
Confidence 366677777887777776644333 333333333333 2222 2233334455666677777666666543221
Q ss_pred C--CCcHHH-----HHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHh
Q 039177 146 R--INRVGF-----AIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVK 218 (453)
Q Consensus 146 ~--~~~~~~-----a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 218 (453)
. .+++.. |..+..+-.+ +| ..-|.....+-++.... +++-+.+ =..+--++|-.|-+
T Consensus 81 ce~~~dlq~~~~~va~~Ltkd~Kd---k~-~vPFceFAetV~k~~q~--~e~dK~~----------LGRiGiS~m~~Yhk 144 (233)
T PF14669_consen 81 CEKFADLQRFCACVAEALTKDSKD---KP-GVPFCEFAETVCKDPQN--DEVDKTL----------LGRIGISLMYSYHK 144 (233)
T ss_pred cCCHHHHHHHHHHHHHHHHhcccc---cC-CCCHHHHHHHHhcCCcc--chhhhhh----------hhHHHHHHHHHHHH
Confidence 1 111111 1111111111 11 11233333333333222 2222211 11234577888889
Q ss_pred cCChhHHHHHHHHHHhCCC--------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 039177 219 KEKVFDALGILNQMKSDGI--------------KPDIVCYTMVLNGVIVQEDYVKAEELFDE 266 (453)
Q Consensus 219 ~g~~~~a~~~~~~m~~~~~--------------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 266 (453)
.-++.+..++++.|.+..+ .+--...|.....+.+.|.++.|..++++
T Consensus 145 ~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 145 TLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 9999999999988875322 22334667788889999999999999874
No 398
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=53.13 E-value=99 Score=24.30 Aligned_cols=60 Identities=12% Similarity=0.176 Sum_probs=32.5
Q ss_pred HHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 039177 195 QEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQE 255 (453)
Q Consensus 195 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 255 (453)
..+.+.|++++. --..++..+.+.++.-.|.++++++.+.++..+..|....+..+...|
T Consensus 10 ~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 444555554432 233555666666556667777777766655555554444444444444
No 399
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=52.36 E-value=1.5e+02 Score=26.64 Aligned_cols=23 Identities=13% Similarity=0.036 Sum_probs=12.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHH
Q 039177 309 PDVITYNTLLQALCKVRELNRLR 331 (453)
Q Consensus 309 p~~~~~~~li~~~~~~~~~~~a~ 331 (453)
.|+..|..++.+|.-.|+.+.+.
T Consensus 195 Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 195 FDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred CCHHHHHHHHHHHHHHhhhHHHH
Confidence 45555666666666665544433
No 400
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=52.17 E-value=1.1e+02 Score=30.64 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChh
Q 039177 359 KGDIIEACGLLEEALNKGLCTQSS 382 (453)
Q Consensus 359 ~g~~~~A~~~~~~m~~~~~~~~~~ 382 (453)
.|++.+|.+.+-.+......|...
T Consensus 508 ~~~~~~Aa~~Lv~Ll~~~~~Pk~f 531 (566)
T PF07575_consen 508 EGDFREAASLLVSLLKSPIAPKSF 531 (566)
T ss_dssp ------------------------
T ss_pred hhhHHHHHHHHHHHHCCCCCcHHH
Confidence 366777766666666666655544
No 401
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=51.70 E-value=1.5e+02 Score=25.20 Aligned_cols=160 Identities=11% Similarity=-0.013 Sum_probs=83.5
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHH
Q 039177 206 MVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLG-LVPDVYTYNVYIN 284 (453)
Q Consensus 206 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~ 284 (453)
..+||.|.--+...|+++.|.+.|+...+.++.-+-...|--| ++.-.|++..|.+=+...-+.. -.|=...|--++.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 4568888888888888998888888888765443333333222 2334578888877666665433 1222233332222
Q ss_pred HHHhcCCHHHHHHH-HHHHHHCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCC------cCHHHHHHHHHHH
Q 039177 285 GLCKQNNVEAGIKM-IACMEELGSKPDVITYNTLL-QALCKVRELNRLRELVKEMKWKGIV------LNLQTYSIMIDGL 356 (453)
Q Consensus 285 ~~~~~~~~~~a~~~-~~~m~~~~~~p~~~~~~~li-~~~~~~~~~~~a~~~~~~~~~~~~~------p~~~~~~~li~~~ 356 (453)
+.-++.+|..- .++... .|..-|...| ..|...=.. ..+++.+....-. .=..||--|..-|
T Consensus 178 ---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yLgkiS~---e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~ 247 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYLGKISE---ETLMERLKADATDNTSLAEHLTETYFYLGKYY 247 (297)
T ss_pred ---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHHhhccH---HHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 22344455433 333333 2333332222 222211111 2222222221110 0123566677777
Q ss_pred HhcCCHHHHHHHHHHHHHCC
Q 039177 357 ASKGDIIEACGLLEEALNKG 376 (453)
Q Consensus 357 ~~~g~~~~A~~~~~~m~~~~ 376 (453)
...|+.++|..+|+-.+..+
T Consensus 248 l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 248 LSLGDLDEATALFKLAVANN 267 (297)
T ss_pred hccccHHHHHHHHHHHHHHh
Confidence 88888888888888776654
No 402
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=51.51 E-value=1.1e+02 Score=24.84 Aligned_cols=68 Identities=7% Similarity=0.035 Sum_probs=48.5
Q ss_pred HHHHHHhhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhH
Q 039177 65 SSLLHSFSIYNCEPPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQD 134 (453)
Q Consensus 65 ~~ll~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 134 (453)
..+...++..|++.++.-. .++..+......-.|.++++.+.+. +...+..+.-.-|+.+.+.|-+..
T Consensus 11 ~~~~~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 11 AQAEKLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHHHHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCEEE
Confidence 3444556777888877654 5566666667788999999999887 555566666667788888886543
No 403
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=50.99 E-value=1.2e+02 Score=27.31 Aligned_cols=42 Identities=14% Similarity=0.249 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039177 227 GILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELL 268 (453)
Q Consensus 227 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 268 (453)
++++.|.+.++.|.-.++..+.-.+.+.=.+.+++.+|+.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 344444444444444444444444444444444444444443
No 404
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=48.25 E-value=2.6e+02 Score=28.76 Aligned_cols=86 Identities=10% Similarity=0.042 Sum_probs=54.7
Q ss_pred HHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CC----------cCHHHHHHHHHHHH
Q 039177 292 VEAGIKMIACM-EELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKG---IV----------LNLQTYSIMIDGLA 357 (453)
Q Consensus 292 ~~~a~~~~~~m-~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~----------p~~~~~~~li~~~~ 357 (453)
.++....+... .+.|+..+......++... .|++..++.+++.+...| +. .+......|+.++.
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~ 257 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII 257 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH
Confidence 34545555443 4557777777777777655 589999999998876543 11 12233444555544
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC
Q 039177 358 SKGDIIEACGLLEEALNKGLCTQ 380 (453)
Q Consensus 358 ~~g~~~~A~~~~~~m~~~~~~~~ 380 (453)
+ ++...++.+++++...|..+.
T Consensus 258 ~-~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 258 N-QDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred c-CCHHHHHHHHHHHHHhCCCHH
Confidence 4 778888888888887776433
No 405
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=47.99 E-value=2.4e+02 Score=26.48 Aligned_cols=62 Identities=15% Similarity=0.204 Sum_probs=35.3
Q ss_pred hhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCccChH--hHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Q 039177 132 FQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCVDGK--TCSLILSSVCEQRDLSSDELLGFVQEMKKL 200 (453)
Q Consensus 132 ~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~ 200 (453)
+..|.++|+. +++..|.++|+.+... ++++.. .+..+..+|..=..++.++|.+.++.....
T Consensus 135 ~~~a~~l~n~------~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKELFNR------YDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHhc------CCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4455555544 5666666666667665 444443 344455555544444447777777766554
No 406
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=47.70 E-value=24 Score=27.03 Aligned_cols=35 Identities=20% Similarity=0.148 Sum_probs=27.6
Q ss_pred HHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 039177 89 TLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTY 126 (453)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 126 (453)
.+...|.-.+|-.+|..|+.+ |-+|| .|+.|+...
T Consensus 104 tlR~ygsk~DaY~VF~kML~~-G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLER-GNPPD--DWDALLKEA 138 (140)
T ss_pred chhhhccCCcHHHHHHHHHhC-CCCCc--cHHHHHHHh
Confidence 344567777899999999999 78888 788888653
No 407
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=47.48 E-value=1.6e+02 Score=24.25 Aligned_cols=38 Identities=5% Similarity=0.075 Sum_probs=19.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 039177 283 INGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCK 323 (453)
Q Consensus 283 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 323 (453)
+..|.+.|.+++|.++++..... |+......-+....+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~ 155 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHH
Confidence 33456666666666666665542 344333433333333
No 408
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=47.34 E-value=50 Score=21.75 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 039177 309 PDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLA 357 (453)
Q Consensus 309 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 357 (453)
|+...++.++..+++..-+++++..+.+..+.|.- +..+|---++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 33444455555555555555555555555555432 3444444444333
No 409
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=46.26 E-value=2.1e+02 Score=28.42 Aligned_cols=87 Identities=13% Similarity=0.011 Sum_probs=36.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 039177 288 KQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACG 367 (453)
Q Consensus 288 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 367 (453)
-.|+.-.|...+.........-..+....|.+...+.|...+|..++.+.+..... .+-++-.+.++|.-..+++.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s-epl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSS-EPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhccc-CchHHHhcchhHHHHhhhHHHHH
Confidence 34455555544444332211111122333334444444444444444444433211 33344445555555555555555
Q ss_pred HHHHHHHC
Q 039177 368 LLEEALNK 375 (453)
Q Consensus 368 ~~~~m~~~ 375 (453)
.|+...+.
T Consensus 698 ~~~~a~~~ 705 (886)
T KOG4507|consen 698 AFRQALKL 705 (886)
T ss_pred HHHHHHhc
Confidence 55544443
No 410
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=46.02 E-value=2.4e+02 Score=25.82 Aligned_cols=60 Identities=12% Similarity=0.318 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 280 NVYINGLCKQNNVEAGIKMIACMEEL---GSKPDVITY--NTLLQALCKVRELNRLRELVKEMKW 339 (453)
Q Consensus 280 ~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~ 339 (453)
..++...-+.++.++|.+.++++.+. --.|+.+.| ..+...+...|+++++.+++.+..+
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33444455556667777766666542 112444433 3344555566666666666666655
No 411
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=45.74 E-value=1e+02 Score=21.89 Aligned_cols=21 Identities=14% Similarity=0.037 Sum_probs=11.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 039177 249 NGVIVQEDYVKAEELFDELLV 269 (453)
Q Consensus 249 ~~~~~~g~~~~a~~~~~~m~~ 269 (453)
......|++++|...+++.++
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 344455666666666665543
No 412
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.42 E-value=3.1e+02 Score=26.72 Aligned_cols=45 Identities=2% Similarity=-0.160 Sum_probs=28.7
Q ss_pred HHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 293 EAGIKMIACM-EELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKW 339 (453)
Q Consensus 293 ~~a~~~~~~m-~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 339 (453)
++..+.++.+ ...|+..+......++. ...|++..|+.+++++..
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~ 228 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIV 228 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHH
Confidence 3444445444 34567667776666654 345888889988887654
No 413
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=44.05 E-value=2.1e+02 Score=24.70 Aligned_cols=127 Identities=9% Similarity=0.071 Sum_probs=68.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 039177 246 MVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVR 325 (453)
Q Consensus 246 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 325 (453)
-.+..|.+.-++..|-...++..+ | ..+-.+ +--|.+..+..--.++.+-....++.-+..-...++ +...|
T Consensus 135 RtMEiyS~ttRFalaCN~s~KIiE----P-IQSRCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~G 206 (333)
T KOG0991|consen 135 RTMEIYSNTTRFALACNQSEKIIE----P-IQSRCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQG 206 (333)
T ss_pred HHHHHHcccchhhhhhcchhhhhh----h-HHhhhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccc
Confidence 344455555555555444444433 2 222222 223555555554555555555555554444444443 34567
Q ss_pred CHHHHHHHHHHHHHC-CC-----------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 039177 326 ELNRLRELVKEMKWK-GI-----------VLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQS 381 (453)
Q Consensus 326 ~~~~a~~~~~~~~~~-~~-----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 381 (453)
+..+|+..++.-... |. .|.+.....++..|.+ +++++|.+++.++-+.|+.|..
T Consensus 207 DMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 207 DMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred hHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHH
Confidence 777777776654432 21 3566666666666554 5677777777777777766543
No 414
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=43.68 E-value=1.6e+02 Score=25.66 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=14.8
Q ss_pred HHHHHHHhcCChhHHHHHHhh
Q 039177 121 DLIKTYADAHRFQDSVNLFYK 141 (453)
Q Consensus 121 ~li~~~~~~g~~~~A~~~~~~ 141 (453)
.++++|...|++.+|++-|..
T Consensus 15 ki~rl~l~~~~~~~Av~q~~~ 35 (247)
T PF11817_consen 15 KICRLYLWLNQPTEAVRQFRA 35 (247)
T ss_pred HHHHHHHhCCCHHHHHHHHHH
Confidence 345777777777777777665
No 415
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=43.67 E-value=2.4e+02 Score=25.19 Aligned_cols=82 Identities=12% Similarity=0.202 Sum_probs=52.2
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCccChHhHHHHH-HHHHhc
Q 039177 104 DHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCVDGKTCSLIL-SSVCEQ 182 (453)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~ 182 (453)
+.....+|-.--...+..+...|+..++.+.+.+...+ .+++....|.+.|....-.-+ -.|...
T Consensus 103 ~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~--------------~~~~a~stg~KiDv~l~kiRlg~~y~d~ 168 (412)
T COG5187 103 REKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRR--------------LMRDAMSTGLKIDVFLCKIRLGLIYGDR 168 (412)
T ss_pred HHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHH--------------HHHHHHhcccchhhHHHHHHHHHhhccH
Confidence 33333334444467888899999999999988877665 445566677777765433322 233333
Q ss_pred CCCChHHHHHHHHHHHHcC
Q 039177 183 RDLSSDELLGFVQEMKKLG 201 (453)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~g 201 (453)
.-+ ++.++..+.|.+.|
T Consensus 169 ~vV--~e~lE~~~~~iEkG 185 (412)
T COG5187 169 KVV--EESLEVADDIIEKG 185 (412)
T ss_pred HHH--HHHHHHHHHHHHhC
Confidence 333 67777777787776
No 416
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=43.13 E-value=6.5e+02 Score=30.03 Aligned_cols=140 Identities=12% Similarity=0.044 Sum_probs=79.6
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHhh-cccCC----------CCcHHHH
Q 039177 86 VIKTLAENSQFCDISSVLDHIEKRE-NFETPEFIFIDLIKTYADAHRFQDSVNLFYK-IPKFR----------INRVGFA 153 (453)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~----------~~~~~~a 153 (453)
+..+-.+.+.+..|...++.-.... .-......+-.+...|+.-+++|...-+... ....+ .|++..|
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl~~qil~~e~~g~~~da 1468 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSLYQQILEHEASGNWADA 1468 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccHHHHHHHHHhhccHHHH
Confidence 3445556777778888777731110 0022334555556689999998887776662 22222 6888888
Q ss_pred HHHHHHHHHCCCccC-hHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHH-HHHHHhcCChhHHHHHHH
Q 039177 154 IEILNCMINDGFCVD-GKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNV-IRSLVKKEKVFDALGILN 230 (453)
Q Consensus 154 ~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~ 230 (453)
...|+.+... .|+ ..+++-++......+.. ....-..+..... ..+....|+++ +.+--+.++++.......
T Consensus 1469 ~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l--~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1469 AACYERLIQK--DPDKEKHHSGVLKSMLAIQHL--STEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHhhcC--CCccccchhhHHHhhhcccch--hHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 8888888764 344 55677777766666666 4444333222222 12223333333 334456677776666554
No 417
>PRK09857 putative transposase; Provisional
Probab=42.94 E-value=2e+02 Score=25.86 Aligned_cols=58 Identities=19% Similarity=0.201 Sum_probs=31.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCC
Q 039177 357 ASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADKDVSPG 415 (453)
Q Consensus 357 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 415 (453)
.+.|+.++-.++++.+.+. ........-.+..-+.+.|.-+++.++..+|...|+.++
T Consensus 217 ~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 217 LQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred hhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3445555555555555443 122222233444555555555667777778877777655
No 418
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.42 E-value=4.1e+02 Score=27.48 Aligned_cols=107 Identities=11% Similarity=0.249 Sum_probs=56.9
Q ss_pred cchhhhhhchHHHHHHhhhhccCCCCCCCCCCCCCcchHHHHHHHhhhcCCCCChhhHHHHHHHHHhcCCcchHHHHH--
Q 039177 26 KAKWHQTLDQQQAKQNVKQSLTTPPTKQQQQIPKQPHILSSLLHSFSIYNCEPPPEAYHFVIKTLAENSQFCDISSVL-- 103 (453)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~-- 103 (453)
...|-.-.-.+...++..... |.++..+..-.|.++..++.++.. ++...|..+++.+- +.+=.+..+.
T Consensus 423 ~~eWe~~V~~f~e~~~l~~Ia---~~lPt~~~rL~p~vYemvLve~L~----~~~~~F~e~i~~Wp--~~Lys~l~iisa 493 (846)
T KOG2066|consen 423 AAEWELWVFKFAELDQLTDIA---PYLPTGPPRLKPLVYEMVLVEFLA----SDVKGFLELIKEWP--GHLYSVLTIISA 493 (846)
T ss_pred HHHHHHHHHHhccccccchhh---ccCCCCCcccCchHHHHHHHHHHH----HHHHHHHHHHHhCC--hhhhhhhHHHhh
Confidence 344544444444444444433 333333344566677777766654 55555555554322 1111122222
Q ss_pred --HHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhccc
Q 039177 104 --DHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPK 144 (453)
Q Consensus 104 --~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 144 (453)
.++.+. .-+..+...|+..|...+++.+|+..+-...+
T Consensus 494 ~~~q~~q~---Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 494 TEPQIKQN---SESTALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred cchHHHhh---ccchhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 222222 22334566699999999999999998877554
No 419
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=42.05 E-value=2.2e+02 Score=24.29 Aligned_cols=179 Identities=13% Similarity=0.000 Sum_probs=97.9
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 039177 220 EKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMI 299 (453)
Q Consensus 220 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~ 299 (453)
|-+.-|.--|.+.....++ -..+||-+.--+...|+++.|.+.|+...+....-+-...|.-| ++.--|++..|.+=|
T Consensus 79 GL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHH
Confidence 3333444444444433222 34578877777889999999999999998865332333333333 234567888888777
Q ss_pred HHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039177 300 ACMEELGSKPDV--ITYNTLLQALCKVRELNRLRELV-KEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKG 376 (453)
Q Consensus 300 ~~m~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~-~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 376 (453)
...-+.... |+ ..|--++ -+.-+..+|..-+ +...+. |..-|.-.|-.|. .|++.+ ..+++.++..
T Consensus 157 ~~fYQ~D~~-DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~y-LgkiS~-e~l~~~~~a~- 225 (297)
T COG4785 157 LAFYQDDPN-DPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFY-LGKISE-ETLMERLKAD- 225 (297)
T ss_pred HHHHhcCCC-ChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHH-HhhccH-HHHHHHHHhh-
Confidence 666554321 22 1222222 2333455555433 333333 5444544333332 132221 2333333322
Q ss_pred CCCC-------hhhHHHHHHHHHhCCCHHHHHHHHHHHhhCC
Q 039177 377 LCTQ-------SSMFDETICGLCQRGLVRKALELLKQMADKD 411 (453)
Q Consensus 377 ~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 411 (453)
-.-+ ..+|--|..-+...|+.++|..+|+-.....
T Consensus 226 a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 226 ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 1211 3466667788889999999999999877543
No 420
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=41.71 E-value=2.8e+02 Score=25.40 Aligned_cols=79 Identities=14% Similarity=0.103 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCcCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCChh
Q 039177 313 TYNTLLQALCKVRELNRLRELVKEMKWK---GIVLNLQTY--SIMIDGLASKGDIIEACGLLEEALN-----KGLCTQSS 382 (453)
Q Consensus 313 ~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~ 382 (453)
....++...-+.++.++|.++++++.+. --.|+...| +.+.+.+...|+.+++.+++++..+ .++.++..
T Consensus 77 lvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 77 LVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 3444555666777899999999988775 234566555 4556677788999999999988876 46666443
Q ss_pred -hHHHHHHHH
Q 039177 383 -MFDETICGL 391 (453)
Q Consensus 383 -~~~~li~~~ 391 (453)
.|..+-.-|
T Consensus 157 ~~fY~lssqY 166 (380)
T KOG2908|consen 157 SSFYSLSSQY 166 (380)
T ss_pred hhHHHHHHHH
Confidence 355444443
No 421
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=41.60 E-value=1.4e+02 Score=21.94 Aligned_cols=19 Identities=5% Similarity=0.200 Sum_probs=8.2
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 039177 283 INGLCKQNNVEAGIKMIAC 301 (453)
Q Consensus 283 i~~~~~~~~~~~a~~~~~~ 301 (453)
+.-|...++.++|...+.+
T Consensus 9 l~ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHH
Confidence 3344444444444444444
No 422
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=41.47 E-value=1.6e+02 Score=23.87 Aligned_cols=64 Identities=9% Similarity=-0.020 Sum_probs=38.2
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH
Q 039177 300 ACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIE 364 (453)
Q Consensus 300 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 364 (453)
+.+.+.|++.+..-. .++..+...++.-.|.++++.+.+.+...+..|...-+..+...|-+..
T Consensus 15 ~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 15 KLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 334555666554432 3444444445556777777777777766666666666666677665543
No 423
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.29 E-value=3.1e+02 Score=25.84 Aligned_cols=63 Identities=8% Similarity=-0.033 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 207 VDYTNVIRSLVKKEKVFDALGILNQMKSDG--IKPDIVCYTMVLNGVIVQEDYVKAEELFDELLV 269 (453)
Q Consensus 207 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 269 (453)
..+.-+.+.|..+|+++.|++.|.+.++-- .+-.+..|-.+|..-...|+|.....+..+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 457788899999999999999998865421 112344566677777778888887777777655
No 424
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=41.05 E-value=2.7e+02 Score=25.00 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=16.6
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHH
Q 039177 344 LNLQTYSIMIDGLASKGDIIEAC 366 (453)
Q Consensus 344 p~~~~~~~li~~~~~~g~~~~A~ 366 (453)
.|+..|..++.+|.-.|+...+.
T Consensus 195 Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 195 FDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred CCHHHHHHHHHHHHHHhhhHHHH
Confidence 37777888888887777666544
No 425
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=40.75 E-value=1e+02 Score=20.03 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=20.0
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----hcCCHHHHHHH
Q 039177 218 KKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVI-----VQEDYVKAEEL 263 (453)
Q Consensus 218 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-----~~g~~~~a~~~ 263 (453)
..|++-+|.++++.+=.....+....+..+|.... +.|+...|..+
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 45555556666555543322223344444444322 34455444443
No 426
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=40.74 E-value=1.3e+02 Score=21.33 Aligned_cols=23 Identities=30% Similarity=0.247 Sum_probs=14.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 039177 352 MIDGLASKGDIIEACGLLEEALN 374 (453)
Q Consensus 352 li~~~~~~g~~~~A~~~~~~m~~ 374 (453)
+.......|+.++|...+++.++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 33445566777777777766654
No 427
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=40.57 E-value=1.5e+02 Score=21.90 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=15.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039177 208 DYTNVIRSLVKKEKVFDALGILNQMKS 234 (453)
Q Consensus 208 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 234 (453)
-|..|+..|...|..++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 355555666666666666666655554
No 428
>PHA03100 ankyrin repeat protein; Provisional
Probab=40.40 E-value=3.5e+02 Score=26.17 Aligned_cols=235 Identities=12% Similarity=0.083 Sum_probs=104.4
Q ss_pred HHHHHHHHHCCCccChHhH--HHHHHH-----HHhcCCCChHHHHHHHHHHHHcCCCcChh---hHHHHHHHHH-hcCCh
Q 039177 154 IEILNCMINDGFCVDGKTC--SLILSS-----VCEQRDLSSDELLGFVQEMKKLGFCFGMV---DYTNVIRSLV-KKEKV 222 (453)
Q Consensus 154 ~~~~~~m~~~~~~p~~~~~--~~ll~~-----~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~li~~~~-~~g~~ 222 (453)
.++++.+.+.|..|+.... ...+.. .+..+.. ++.+.+.+.|..++.. ..+.|..+.. ..|+.
T Consensus 48 ~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~------~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~ 121 (480)
T PHA03100 48 IDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVK------EIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSY 121 (480)
T ss_pred HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchH------HHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChH
Confidence 5667777778877765422 234444 3443433 3344455666443322 2333333332 55555
Q ss_pred hHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh--HHHHHHHHHhcCCHHHHHHH
Q 039177 223 FDALGILNQMKSDGIKPDIVC--YTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYT--YNVYINGLCKQNNVEAGIKM 298 (453)
Q Consensus 223 ~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~~~~~~a~~~ 298 (453)
+- ++.+.+.|..++... -.+.+..++..|. .-.++++.+.+.|..++... -.+.+...+..|+.+ +
T Consensus 122 ~i----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~----i 191 (480)
T PHA03100 122 SI----VEYLLDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNID----V 191 (480)
T ss_pred HH----HHHHHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHH----H
Confidence 43 344445554443221 1234444555552 11234455566665553322 123444556666554 3
Q ss_pred HHHHHHCCCCCCHHH--------HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH---HHHHHHHHHHHhcCCHHHHHH
Q 039177 299 IACMEELGSKPDVIT--------YNTLLQALCKVRELNRLRELVKEMKWKGIVLNL---QTYSIMIDGLASKGDIIEACG 367 (453)
Q Consensus 299 ~~~m~~~~~~p~~~~--------~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~ 367 (453)
.+.+.+.|..++... +...+...+..|+ ...++.+.+.+.|..++. .-.+.|..+ +..|+.+-+
T Consensus 192 v~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~iv~~Ll~~g~din~~d~~g~TpL~~A-~~~~~~~iv-- 266 (480)
T PHA03100 192 IKFLLDNGADINAGDIETLLFTIFETPLHIAACYNE--ITLEVVNYLLSYGVPINIKDVYGFTPLHYA-VYNNNPEFV-- 266 (480)
T ss_pred HHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHHHHHHHHcCCCCCCCCCCCCCHHHHH-HHcCCHHHH--
Confidence 444555565554221 1333344444555 112344444555554432 223444333 445665433
Q ss_pred HHHHHHHCCCCCChhh---HHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCH
Q 039177 368 LLEEALNKGLCTQSSM---FDETICGLCQRGLVRKALELLKQMADKDVSPGA 416 (453)
Q Consensus 368 ~~~~m~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 416 (453)
+.+.+.|..++... .+.+ ....+.|+. ++++.+.+.|...+.
T Consensus 267 --~~Ll~~gad~n~~d~~g~tpl-~~A~~~~~~----~iv~~Ll~~g~~i~~ 311 (480)
T PHA03100 267 --KYLLDLGANPNLVNKYGDTPL-HIAILNNNK----EIFKLLLNNGPSIKT 311 (480)
T ss_pred --HHHHHcCCCCCccCCCCCcHH-HHHHHhCCH----HHHHHHHhcCCCHHH
Confidence 33444554333221 1122 222334443 355555656654443
No 429
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=40.36 E-value=3.2e+02 Score=25.63 Aligned_cols=175 Identities=13% Similarity=0.104 Sum_probs=92.3
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHH--HHHHHHCCCccChHhHHHHHHHHHhcCCCChHH
Q 039177 112 FETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEI--LNCMINDGFCVDGKTCSLILSSVCEQRDLSSDE 189 (453)
Q Consensus 112 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~--~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~ 189 (453)
...+..++..+++.|...++|+.--+...-+..+ .|..+.|... .+-|.-..-.||..+--.++..+...-..
T Consensus 48 ~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskk-rgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li~tLr~Vteg---- 122 (439)
T KOG1498|consen 48 MASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKK-RGQLKQAIQSMVQQAMTYIDGTPDLETKIKLIETLRTVTEG---- 122 (439)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhhcC----
Confidence 3445667778888888888877654444332221 2333333322 11122122234555444444433221111
Q ss_pred HHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHhcCCH
Q 039177 190 LLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMV------------LNGVIVQEDY 257 (453)
Q Consensus 190 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l------------l~~~~~~g~~ 257 (453)
++|-+..+ +..-..|...+-.+|++++|..++.++. +.||.++ ++.|...+|+
T Consensus 123 --kIyvEvER------arlTk~L~~ike~~Gdi~~Aa~il~el~-------VETygsm~~~ekV~fiLEQmrKOG~~~D~ 187 (439)
T KOG1498|consen 123 --KIYVEVER------ARLTKMLAKIKEEQGDIAEAADILCELQ-------VETYGSMEKSEKVAFILEQMRLCLLRLDY 187 (439)
T ss_pred --ceEEeehH------HHHHHHHHHHHHHcCCHHHHHHHHHhcc-------hhhhhhhHHHHHHHHHHHHHHHHHHhhhH
Confidence 01111111 1222355666778899999988887764 3344432 3456666777
Q ss_pred HHHHHHHHHHHHCCCC-CC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039177 258 VKAEELFDELLVLGLV-PD-----VYTYNVYINGLCKQNNVEAGIKMIACMEELG 306 (453)
Q Consensus 258 ~~a~~~~~~m~~~g~~-~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 306 (453)
-.|.-+-+.....-+. || ..-|+.++......+.+=.+.+.|+.+-..|
T Consensus 188 vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~ 242 (439)
T KOG1498|consen 188 VRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTG 242 (439)
T ss_pred HHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhccc
Confidence 7776665555433222 33 2346777777777777777777777776544
No 430
>PHA02798 ankyrin-like protein; Provisional
Probab=40.27 E-value=3.4e+02 Score=26.47 Aligned_cols=13 Identities=0% Similarity=-0.003 Sum_probs=6.1
Q ss_pred HHHHHhhCCCCCC
Q 039177 403 LLKQMADKDVSPG 415 (453)
Q Consensus 403 ~~~~m~~~~~~p~ 415 (453)
+++.+.+.|..++
T Consensus 273 ~v~~LL~~GAdin 285 (489)
T PHA02798 273 IFEYLLQLGGDIN 285 (489)
T ss_pred HHHHHHHcCCccc
Confidence 3444444554444
No 431
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=39.86 E-value=2e+02 Score=25.07 Aligned_cols=17 Identities=6% Similarity=-0.132 Sum_probs=8.1
Q ss_pred HHHHhcCCcchHHHHHH
Q 039177 88 KTLAENSQFCDISSVLD 104 (453)
Q Consensus 88 ~~~~~~~~~~~a~~~~~ 104 (453)
+.+...++...|.+-|+
T Consensus 18 rl~l~~~~~~~Av~q~~ 34 (247)
T PF11817_consen 18 RLYLWLNQPTEAVRQFR 34 (247)
T ss_pred HHHHhCCCHHHHHHHHH
Confidence 44444555555544443
No 432
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=39.55 E-value=4.7e+02 Score=27.39 Aligned_cols=92 Identities=14% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------------CCCChhhHHHHHHHHHh
Q 039177 328 NRLRELVKEMKWK-GIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKG-------------LCTQSSMFDETICGLCQ 393 (453)
Q Consensus 328 ~~a~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------------~~~~~~~~~~li~~~~~ 393 (453)
++..+.+..+.+. |+..+......+.. ...|++.+|+.+++.....+ -..+...+..++.++..
T Consensus 181 eeIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~~ 258 (830)
T PRK07003 181 GHIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDALAA 258 (830)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHHc
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 039177 394 RGLVRKALELLKQMADKDVSPGARVWEAL 422 (453)
Q Consensus 394 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 422 (453)
|+..+++.+++++...|+.+....-..+
T Consensus 259 -~d~~~~l~~~~~l~~~g~~~~~~l~dLl 286 (830)
T PRK07003 259 -GDGPEILAVADEMALRSLSFSTALQDLA 286 (830)
T ss_pred -CCHHHHHHHHHHHHHhCCCHHHHHHHHH
No 433
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=38.93 E-value=1.6e+02 Score=21.76 Aligned_cols=26 Identities=50% Similarity=0.669 Sum_probs=17.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhh
Q 039177 384 FDETICGLCQRGLVRKALELLKQMAD 409 (453)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (453)
|..|+.-|...|..++|++++.+..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 66666666666666666666666654
No 434
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=38.84 E-value=51 Score=21.68 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=40.5
Q ss_pred CCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 039177 76 CEPPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAH 130 (453)
Q Consensus 76 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 130 (453)
+.|+...++.++...++....++++..+....+++. .+..+|..-++.+++..
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~--I~~d~~lK~vR~LaReQ 56 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS--IDLDTFLKQVRSLAREQ 56 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--S-HHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHH
Confidence 346667788999999999999999999999999843 45667777777777643
No 435
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=38.65 E-value=2e+02 Score=24.10 Aligned_cols=61 Identities=13% Similarity=0.088 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q 039177 311 VITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQ-TYSIMIDGLASKGDIIEACGLLEEA 372 (453)
Q Consensus 311 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m 372 (453)
....+.++..|...|+++.|.++|.-+++.. ..|.. .|..=+..+.+.+.-....+.++.|
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l 102 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWL 102 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHH
Confidence 3457888999999999999999999988763 22433 3555455555555444443444443
No 436
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=38.09 E-value=3.1e+02 Score=24.87 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=15.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC
Q 039177 357 ASKGDIIEACGLLEEALNKGLCT 379 (453)
Q Consensus 357 ~~~g~~~~A~~~~~~m~~~~~~~ 379 (453)
+..+++..-.+..+++.+.|..|
T Consensus 266 a~S~d~~~~v~~~Rei~~sg~~~ 288 (346)
T KOG0989|consen 266 ALSADTPNTVKRVREIMRSGYSP 288 (346)
T ss_pred HHccChHHHHHHHHHHHHhccCH
Confidence 44567777777777777776544
No 437
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=38.08 E-value=3.9e+02 Score=26.00 Aligned_cols=280 Identities=13% Similarity=0.037 Sum_probs=145.8
Q ss_pred ccCCCCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcC-----------hhhHHH
Q 039177 143 PKFRINRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFG-----------MVDYTN 211 (453)
Q Consensus 143 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~-----------~~~~~~ 211 (453)
...+.+.++..+++++.+...|..-..+.++.....|.+.+.......++-+..+...-..|+ ...+..
T Consensus 26 ~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn 105 (696)
T KOG2471|consen 26 EQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVMDYN 105 (696)
T ss_pred hccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHHhhh
Confidence 344567777888888888888777666678888888888887743333333333332211111 111222
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHH---HHHHHCCC----------
Q 039177 212 VIRSLVKKEKVFDALGILNQMKSDGIKP------DIVCYTMVLNGVIVQEDYVKAEELF---DELLVLGL---------- 272 (453)
Q Consensus 212 li~~~~~~g~~~~a~~~~~~m~~~~~~~------~~~~~~~ll~~~~~~g~~~~a~~~~---~~m~~~g~---------- 272 (453)
..-.|.....+..|+++...+...- .| -.+++ .....+....+.++|+.++ .+|...+-
T Consensus 106 ~aVi~yh~~~~g~a~~~~~~lv~r~-e~le~~~aa~v~~-l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~ 183 (696)
T KOG2471|consen 106 FAVIFYHHEENGSAMQLSSNLVSRT-ESLESSSAASVTL-LSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPA 183 (696)
T ss_pred hheeeeeHhhcchHHHhhhhHHHHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccch
Confidence 2222333444556666555444320 00 01111 1222344445556665544 34432210
Q ss_pred -------CCChhhHHH------------HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHH
Q 039177 273 -------VPDVYTYNV------------YINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTL-LQALCKVRELNRLRE 332 (453)
Q Consensus 273 -------~~~~~~~~~------------li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-i~~~~~~~~~~~a~~ 332 (453)
.|+...-.. -+.+|....++..+.+-.+.... +.-|...+-.| -+.+.-.|++.+|.+
T Consensus 184 nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn--~a~~s~~~l~LKsq~eY~~gn~~kA~K 261 (696)
T KOG2471|consen 184 NNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMN--IAQDSSMALLLKSQLEYAHGNHPKAMK 261 (696)
T ss_pred hhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhh--hcCCCcHHHHHHHHHHHHhcchHHHHH
Confidence 111111111 12222222222222222221111 11122222222 234566799999998
Q ss_pred HHHHHHH---CCCCcC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------CCCCCC-----------hhhHHH
Q 039177 333 LVKEMKW---KGIVLN-----LQTYSIMIDGLASKGDIIEACGLLEEALN-------KGLCTQ-----------SSMFDE 386 (453)
Q Consensus 333 ~~~~~~~---~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~~~-----------~~~~~~ 386 (453)
++...-- .|...+ -..||.|...+.+.|.+..+..+|.+..+ .|++|. ..+||.
T Consensus 262 lL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNc 341 (696)
T KOG2471|consen 262 LLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNC 341 (696)
T ss_pred HHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhh
Confidence 8764322 132112 22346676777778888888888877764 354333 345665
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHhchhc
Q 039177 387 TICGLCQRGLVRKALELLKQMADKDVSPGARVWEALLLSSVS 428 (453)
Q Consensus 387 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~ 428 (453)
-+ .|...|++-.|.+.|.+.... +.-++..|.-+-++|..
T Consensus 342 G~-~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 342 GL-LYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hH-HHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 44 678899999999999987753 66788999999988853
No 438
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=37.99 E-value=98 Score=22.92 Aligned_cols=44 Identities=11% Similarity=0.113 Sum_probs=22.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 039177 213 IRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQED 256 (453)
Q Consensus 213 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 256 (453)
+..+...+..-.|.++++.+.+.+...+..|..-.|..+...|-
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 33344444445555666666555554455554445555554443
No 439
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.24 E-value=5.2e+02 Score=27.28 Aligned_cols=158 Identities=18% Similarity=0.148 Sum_probs=90.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 039177 211 NVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQN 290 (453)
Q Consensus 211 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 290 (453)
++|.-+.+.|..+-|+.+.+.-. + -...+...|+++.|++.-..+ .|..+|..|.....+.|
T Consensus 625 aiIaYLqKkgypeiAL~FVkD~~---------t---RF~LaLe~gnle~ale~akkl------dd~d~w~rLge~Al~qg 686 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKDER---------T---RFELALECGNLEVALEAAKKL------DDKDVWERLGEEALRQG 686 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecCcc---------h---heeeehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhc
Confidence 44555555566655555443221 1 112344557777776654443 45677888888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039177 291 NVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLE 370 (453)
Q Consensus 291 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 370 (453)
+.+-|+..|+..+. |+-|--.|.-.|+.++..++.+....+ +..+-..... .-.|++++-.++++
T Consensus 687 n~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r----~D~~~~~qna--lYl~dv~ervkIl~ 751 (1202)
T KOG0292|consen 687 NHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIR----NDATGQFQNA--LYLGDVKERVKILE 751 (1202)
T ss_pred chHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhh----hhhHHHHHHH--HHhccHHHHHHHHH
Confidence 88888877777665 333444566677777777666655444 2111111112 23577777777765
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhC
Q 039177 371 EALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADK 410 (453)
Q Consensus 371 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 410 (453)
.. |..| .. | + .-..+|.-++|.++.++..+.
T Consensus 752 n~---g~~~-la-y---l-ta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 752 NG---GQLP-LA-Y---L-TAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred hc---Cccc-HH-H---H-HHhhcCcHHHHHHHHHhhccc
Confidence 43 3222 11 1 1 223467788888888887763
No 440
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.94 E-value=6e+02 Score=27.86 Aligned_cols=126 Identities=12% Similarity=0.027 Sum_probs=74.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 039177 278 TYNVYINGLCKQNNVEAGIKMIACMEELGSKP---D-VITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMI 353 (453)
Q Consensus 278 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li 353 (453)
-|-.+++.+-+.+..+.+.++-...++. +.+ + ..+++.+.+-....|.+-+|...+-.-... .--......++
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRqlv 1061 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQLV 1061 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHHH
Confidence 3666777788888888888877665553 222 2 236777778888888887776655322111 11123455666
Q ss_pred HHHHhcCCHHH------------HHH-HHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 039177 354 DGLASKGDIIE------------ACG-LLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQ 406 (453)
Q Consensus 354 ~~~~~~g~~~~------------A~~-~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 406 (453)
..++.+|.++. ... +++..-+....-....|+.|-.-+...+++.+|-.++-+
T Consensus 1062 ivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYE 1127 (1480)
T KOG4521|consen 1062 IVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYE 1127 (1480)
T ss_pred HHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHH
Confidence 66666766553 333 333333332222334566666667788888888776544
No 441
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=36.87 E-value=84 Score=23.26 Aligned_cols=41 Identities=10% Similarity=0.063 Sum_probs=21.6
Q ss_pred HHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHH
Q 039177 122 LIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMIN 162 (453)
Q Consensus 122 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~ 162 (453)
+++.+-+|.-.++|+++.+-|.+.+.-..+.|..+-..+..
T Consensus 67 ViD~lrRC~T~EEALEVInylek~GEIt~e~A~eLr~~L~~ 107 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRGEITPEEAKELRSILVK 107 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45556666666676666666554443333444444333333
No 442
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.80 E-value=1.6e+02 Score=21.31 Aligned_cols=59 Identities=14% Similarity=0.051 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 039177 363 IEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADKDVSPGARVWEALL 423 (453)
Q Consensus 363 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 423 (453)
..-.+.++++..++....+.....|--.|.+.|+.+.|.+-|+.=+ .+-|...+|.-+|
T Consensus 54 ~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEK--alFPES~~fmDFL 112 (121)
T COG4259 54 AALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEK--ALFPESGVFMDFL 112 (121)
T ss_pred HHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhh--hhCccchhHHHHH
Confidence 3344556666666544444455566667777788777777666533 4566666666544
No 443
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=36.49 E-value=1.9e+02 Score=22.00 Aligned_cols=45 Identities=4% Similarity=0.171 Sum_probs=36.5
Q ss_pred cchHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHhh
Q 039177 96 FCDISSVLDHIEKRENFE-TPEFIFIDLIKTYADAHRFQDSVNLFYK 141 (453)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~ 141 (453)
...+.++|..|... |+. --+..|......+...|++++|.++|..
T Consensus 79 ~~~~~~if~~l~~~-~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 79 SSDPREIFKFLYSK-GIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp BSHHHHHHHHHHHH-TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred ccCHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 44899999999988 544 4567888899999999999999999864
No 444
>PRK09462 fur ferric uptake regulator; Provisional
Probab=36.36 E-value=2.1e+02 Score=22.44 Aligned_cols=64 Identities=8% Similarity=0.054 Sum_probs=43.5
Q ss_pred HHHhhhcCCCCChhhHHHHHHHHHhc-CCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChh
Q 039177 68 LHSFSIYNCEPPPEAYHFVIKTLAEN-SQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQ 133 (453)
Q Consensus 68 l~~~~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 133 (453)
...+...|.++++.-. .++..+... +..-.|.++++.+.+. +...+..+.-.-++.+.+.|-+.
T Consensus 5 ~~~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~-~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 5 NTALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDM-GEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhh-CCCCCHHHHHHHHHHHHHCCCEE
Confidence 3445666777666543 344555554 5678899999999887 45556666667778888888654
No 445
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=36.26 E-value=4.2e+02 Score=25.84 Aligned_cols=89 Identities=12% Similarity=0.134 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHH
Q 039177 315 NTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLA--SKGDIIEACGLLEEALNK-GLCTQSSMFDETICGL 391 (453)
Q Consensus 315 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~ 391 (453)
+.++..+.+.|...+|..++..+... +.|+...|..+|+.-. ..-++..+..+++.|... | .++..|-..+.--
T Consensus 464 s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e 540 (568)
T KOG2396|consen 464 SKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKEE 540 (568)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHhh
Confidence 44555555666666666666655554 2335555555554311 111255555566555543 4 3444444444444
Q ss_pred HhCCCHHHHHHHHHH
Q 039177 392 CQRGLVRKALELLKQ 406 (453)
Q Consensus 392 ~~~g~~~~A~~~~~~ 406 (453)
...|..+.+-.++.+
T Consensus 541 ~~~g~~en~~~~~~r 555 (568)
T KOG2396|consen 541 LPLGRPENCGQIYWR 555 (568)
T ss_pred ccCCCcccccHHHHH
Confidence 455555555555444
No 446
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=36.17 E-value=3.1e+02 Score=27.01 Aligned_cols=17 Identities=0% Similarity=0.219 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHcCCCc
Q 039177 188 DELLGFVQEMKKLGFCF 204 (453)
Q Consensus 188 ~~a~~~~~~~~~~g~~~ 204 (453)
+.|+.+++++...|..|
T Consensus 274 ~~Al~~l~~L~~~g~~~ 290 (507)
T PRK06645 274 EKAINLINKLYGSSVNL 290 (507)
T ss_pred HHHHHHHHHHHHcCCCH
Confidence 56666666666666444
No 447
>PF13877 RPAP3_C: Potential Monad-binding region of RPAP3
Probab=35.94 E-value=53 Score=23.38 Aligned_cols=23 Identities=13% Similarity=0.413 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHh
Q 039177 118 IFIDLIKTYADAHRFQDSVNLFY 140 (453)
Q Consensus 118 ~~~~li~~~~~~g~~~~A~~~~~ 140 (453)
..-..+..++++++++-+..++.
T Consensus 67 ~i~~~L~~L~~~~RF~l~~~fl~ 89 (94)
T PF13877_consen 67 FIFEILEALSKVKRFDLAVMFLS 89 (94)
T ss_pred HHHHHHHHhcCCCCHHHHHHhcC
Confidence 44455566667777776665554
No 448
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=35.90 E-value=4.8e+02 Score=26.44 Aligned_cols=132 Identities=11% Similarity=0.060 Sum_probs=65.2
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHcC---CCCCCHHHHHHH-HHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHH
Q 039177 86 VIKTLAENSQFCDISSVLDHIEKRE---NFETPEFIFIDL-IKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMI 161 (453)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~ 161 (453)
+++.+.+.+... |....+...+.. +..+-...+.-+ +..+...+++..|.+.++.+.. ..
T Consensus 106 l~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~---------------~a 169 (608)
T PF10345_consen 106 LARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQ---------------LA 169 (608)
T ss_pred HHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH---------------Hh
Confidence 444444444444 777666655431 112223333333 2223233566666666655332 11
Q ss_pred HCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC---------CcChhhHHHHHHHHH--hcCChhHHHHHHH
Q 039177 162 NDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGF---------CFGMVDYTNVIRSLV--KKEKVFDALGILN 230 (453)
Q Consensus 162 ~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~---------~~~~~~~~~li~~~~--~~g~~~~a~~~~~ 230 (453)
.....|-..++..++.+.........+.+.+..+.+..... .|...+|..+++.++ ..|+++.+...++
T Consensus 170 ~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~ 249 (608)
T PF10345_consen 170 NQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLK 249 (608)
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 11123445555666666555444433566666666533211 234556666666544 4566666666665
Q ss_pred HHH
Q 039177 231 QMK 233 (453)
Q Consensus 231 ~m~ 233 (453)
++.
T Consensus 250 ~lq 252 (608)
T PF10345_consen 250 QLQ 252 (608)
T ss_pred HHH
Confidence 554
No 449
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=35.69 E-value=68 Score=16.56 Aligned_cols=12 Identities=17% Similarity=0.183 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 039177 328 NRLRELVKEMKW 339 (453)
Q Consensus 328 ~~a~~~~~~~~~ 339 (453)
+.+..+|+.+..
T Consensus 4 ~~~r~i~e~~l~ 15 (33)
T smart00386 4 ERARKIYERALE 15 (33)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 450
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=35.45 E-value=91 Score=23.35 Aligned_cols=45 Identities=11% Similarity=0.158 Sum_probs=23.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 039177 211 NVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQE 255 (453)
Q Consensus 211 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 255 (453)
.++....+.+..-.|.++++.+.+.+...+..|.---|..+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 444555555555666666666666655555554444444444444
No 451
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.42 E-value=3e+02 Score=23.87 Aligned_cols=27 Identities=4% Similarity=0.164 Sum_probs=20.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 039177 317 LLQALCKVRELNRLRELVKEMKWKGIV 343 (453)
Q Consensus 317 li~~~~~~~~~~~a~~~~~~~~~~~~~ 343 (453)
+..--+..+++.+|+++|+++....+.
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334445788999999999999887555
No 452
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.40 E-value=3.9e+02 Score=25.24 Aligned_cols=175 Identities=11% Similarity=-0.014 Sum_probs=99.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---------CCCCCH
Q 039177 243 CYTMVLNGVIVQEDYVKAEELFDELLVLG--LVPDVYTYNVYINGLCKQNNVEAGIKMIACMEEL---------GSKPDV 311 (453)
Q Consensus 243 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------~~~p~~ 311 (453)
.+.-+...|...|+++.|++.|.+..+.. .+.....|-.+|..-.-.|++..+.....+.... .+.+-.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 45567788999999999999999965532 1123344555666666677777777666665543 122334
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCcCHHHHHHHHHHHHhcCCHHHHHHHH-----HHHHHCCCCCC
Q 039177 312 ITYNTLLQALCKVRELNRLRELVKEMKWKG------IVLNLQTYSIMIDGLASKGDIIEACGLL-----EEALNKGLCTQ 380 (453)
Q Consensus 312 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~p~~~~~~~li~~~~~~g~~~~A~~~~-----~~m~~~~~~~~ 380 (453)
.++..+...+.+ ++..|.+.|-...... +.|...+....+.+.+-.++-+--..+. ....+ +.|.
T Consensus 232 ~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~fle--l~Pq 307 (466)
T KOG0686|consen 232 KCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLE--LEPQ 307 (466)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHh--cChH
Confidence 445555544444 6676666664433321 2344444444555555555444333332 22222 2333
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHhhC-----CCCCCHHHHHHHHhc
Q 039177 381 SSMFDETICGLCQRGLVRKALELLKQMADK-----DVSPGARVWEALLLS 425 (453)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~~~~~~~ll~a 425 (453)
.... |..|. .+++...++++++++.. -+.|...+.-.+|..
T Consensus 308 --lr~i-l~~fy-~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR~ 353 (466)
T KOG0686|consen 308 --LREI-LFKFY-SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIRN 353 (466)
T ss_pred --HHHH-HHHHh-hhhHHHHHHHHHHhccceeechhcchhHHHHHHHHHH
Confidence 2333 33332 45788888888888653 366777777776654
No 453
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.33 E-value=4.3e+02 Score=25.75 Aligned_cols=46 Identities=7% Similarity=0.086 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcC
Q 039177 172 CSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKE 220 (453)
Q Consensus 172 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 220 (453)
...++.+. ..++. +.|..++..|...|..|....-..+..++-..|
T Consensus 247 i~~li~si-~~~d~--~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~ 292 (472)
T PRK14962 247 VRDYINAI-FNGDV--KRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLE 292 (472)
T ss_pred HHHHHHHH-HcCCH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 33444433 33444 666666666666665554443333333333333
No 454
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=35.12 E-value=3.6e+02 Score=24.81 Aligned_cols=44 Identities=16% Similarity=0.101 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 039177 348 TYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGL 391 (453)
Q Consensus 348 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 391 (453)
-|-++.......|.+++.+.+|++.+..|..|-..+-..++..+
T Consensus 142 YWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 142 YWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 34455555555555555666666665555555555444444443
No 455
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=34.91 E-value=3.1e+02 Score=23.87 Aligned_cols=120 Identities=15% Similarity=0.089 Sum_probs=58.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH-HHHHHhcCC
Q 039177 214 RSLVKKEKVFDALGILNQMKSDGIKPDI-VCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVY-INGLCKQNN 291 (453)
Q Consensus 214 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~~~ 291 (453)
+-|.....++.|+..|.+.... .|+. .-|+.=+.++.+..+++.+..=-...++ +.|+..--..+ -.+......
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred ccccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcc
Confidence 3444555666666655555443 4444 3344455556666666665544444443 33444333322 233444555
Q ss_pred HHHHHHHHHHHHH----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039177 292 VEAGIKMIACMEE----LGSKPDVITYNTLLQALCKVRELNRLRELVKEM 337 (453)
Q Consensus 292 ~~~a~~~~~~m~~----~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 337 (453)
+++|+..+.+... ..+.+.......|..+=-+.-...+..++.++.
T Consensus 94 ~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 6666666655432 223333344555554443333444455555444
No 456
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=34.78 E-value=3.9e+02 Score=25.11 Aligned_cols=55 Identities=20% Similarity=0.131 Sum_probs=35.2
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHHC
Q 039177 215 SLVKKEKVFDALGILNQMKSDGIKPDIV--CYTMVLNGVI--VQEDYVKAEELFDELLVL 270 (453)
Q Consensus 215 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~--~~g~~~~a~~~~~~m~~~ 270 (453)
.+.+.+++..|.++|+.+... ++++.. .+..+..+|. ...++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344677888888888888776 444443 3444444443 356677888888776653
No 457
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=34.11 E-value=2.8e+02 Score=23.14 Aligned_cols=55 Identities=9% Similarity=0.119 Sum_probs=32.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC--------------CCChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 039177 352 MIDGLASKGDIIEACGLLEEALNKGL--------------CTQSSMFDETICGLCQRGLVRKALELLKQ 406 (453)
Q Consensus 352 li~~~~~~g~~~~A~~~~~~m~~~~~--------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 406 (453)
++-.|-+.-++.++.++++.|.+..+ .+--.+.|.-...|.+.|..|.|+.++++
T Consensus 138 ~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 138 LMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 34444555555555555555543211 22233455567778888999999888874
No 458
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=33.97 E-value=3.5e+02 Score=24.24 Aligned_cols=99 Identities=14% Similarity=0.116 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCChhhHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCH---
Q 039177 240 DIVCYTMVLNGVIVQEDYVKAEELFDELLV----LGLVPDVYTYNVYI-NGLCKQNNVEAGIKMIACMEELGSKPDV--- 311 (453)
Q Consensus 240 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~----~g~~~~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~~~~p~~--- 311 (453)
....+..+..-|++.++.+.+.++..+..+ .|.+.|+...-+-+ -.|....-.++.++..+.|.+.|...+.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 345666677777777777776666555433 35555544333222 2233444456666666677776644322
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 312 -ITYNTLLQALCKVRELNRLRELVKEMKWK 340 (453)
Q Consensus 312 -~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 340 (453)
.+|-.+..+ ...++.+|-.++.+....
T Consensus 194 yK~Y~Gi~~m--~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 194 YKVYKGIFKM--MRRNFKEAAILLSDILPT 221 (412)
T ss_pred HHHHHHHHHH--HHHhhHHHHHHHHHHhcc
Confidence 233333222 233566666666555443
No 459
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.59 E-value=80 Score=21.70 Aligned_cols=19 Identities=5% Similarity=0.120 Sum_probs=9.0
Q ss_pred HHHHHhcCChhHHHHHHhh
Q 039177 123 IKTYADAHRFQDSVNLFYK 141 (453)
Q Consensus 123 i~~~~~~g~~~~A~~~~~~ 141 (453)
++.+.+|.-.++|+++.+-
T Consensus 38 ~D~L~rCdT~EEAlEii~y 56 (98)
T COG4003 38 IDFLRRCDTEEEALEIINY 56 (98)
T ss_pred HHHHHHhCcHHHHHHHHHH
Confidence 3444445544554444444
No 460
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=33.48 E-value=2e+02 Score=21.30 Aligned_cols=75 Identities=16% Similarity=0.128 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 039177 327 LNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQ 406 (453)
Q Consensus 327 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 406 (453)
.++|..+.+.+...+.. ...+--+-+..+.+.|++++|. . .- ...-.||...|.+| +-.+.|..+++...+.+
T Consensus 22 H~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~AL--l-~~-~~~~~pdL~p~~AL--~a~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 22 HQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEAL--L-LP-QCHCYPDLEPWAAL--CAWKLGLASALESRLTR 94 (116)
T ss_dssp HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHH--H-HH-TTS--GGGHHHHHH--HHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHH--H-hc-ccCCCccHHHHHHH--HHHhhccHHHHHHHHHH
Confidence 45555555555554331 2222223334455566666651 1 11 11123444443322 33355666666655555
Q ss_pred Hh
Q 039177 407 MA 408 (453)
Q Consensus 407 m~ 408 (453)
+.
T Consensus 95 la 96 (116)
T PF09477_consen 95 LA 96 (116)
T ss_dssp HC
T ss_pred HH
Confidence 54
No 461
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=33.33 E-value=1.6e+02 Score=22.32 Aligned_cols=29 Identities=28% Similarity=0.329 Sum_probs=15.6
Q ss_pred HHHHhCCCHHHHHHHHHH---Hhh--CCCCCCHH
Q 039177 389 CGLCQRGLVRKALELLKQ---MAD--KDVSPGAR 417 (453)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~---m~~--~~~~p~~~ 417 (453)
.++-..|+.++|+..|+. |+. +|-.|...
T Consensus 108 ~Al~~~Gr~~eA~~~fr~agEMiaERKGE~~~ke 141 (144)
T PF12968_consen 108 VALEGLGRKEEALKEFRMAGEMIAERKGEMPGKE 141 (144)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHHHH--S--TTHH
T ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHcCCCcchh
Confidence 456677888888877765 432 45455443
No 462
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.27 E-value=77 Score=28.85 Aligned_cols=89 Identities=16% Similarity=0.051 Sum_probs=40.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 039177 288 KQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACG 367 (453)
Q Consensus 288 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 367 (453)
..|.++.|++.|...+..+ .+....|.-=.+++.+.++...|++=+....+.+.. ...-|-.=-.+-.-.|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHHH
Confidence 4455556665555555532 122334444445555555555555555544443222 11122222222233455555555
Q ss_pred HHHHHHHCCCC
Q 039177 368 LLEEALNKGLC 378 (453)
Q Consensus 368 ~~~~m~~~~~~ 378 (453)
.|....+.++.
T Consensus 204 dl~~a~kld~d 214 (377)
T KOG1308|consen 204 DLALACKLDYD 214 (377)
T ss_pred HHHHHHhcccc
Confidence 55555555443
No 463
>PRK09462 fur ferric uptake regulator; Provisional
Probab=32.79 E-value=2.4e+02 Score=22.09 Aligned_cols=37 Identities=16% Similarity=0.164 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH
Q 039177 326 ELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDI 362 (453)
Q Consensus 326 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 362 (453)
..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 4455666666666555555555554555555555543
No 464
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=32.41 E-value=5e+02 Score=25.61 Aligned_cols=86 Identities=8% Similarity=0.111 Sum_probs=51.5
Q ss_pred HHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------C----------CcCHHHHHHHHH
Q 039177 292 VEAGIKMIAC-MEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKG------I----------VLNLQTYSIMID 354 (453)
Q Consensus 292 ~~~a~~~~~~-m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~----------~p~~~~~~~li~ 354 (453)
.++..+.++. +.+.|+..+......++.. ..|++..|...++.+...+ + ..+....-.|++
T Consensus 189 ~~el~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~ 266 (507)
T PRK06645 189 FEEIFKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVE 266 (507)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHH
Confidence 4445555544 3456777777776666653 4588889988888875431 1 112233333444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC
Q 039177 355 GLASKGDIIEACGLLEEALNKGLCTQ 380 (453)
Q Consensus 355 ~~~~~g~~~~A~~~~~~m~~~~~~~~ 380 (453)
+.. .|+...|+.+++++...|..|.
T Consensus 267 ai~-~~d~~~Al~~l~~L~~~g~~~~ 291 (507)
T PRK06645 267 YII-HRETEKAINLINKLYGSSVNLE 291 (507)
T ss_pred HHH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 443 3777778888887777775443
No 465
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.15 E-value=5.1e+02 Score=25.60 Aligned_cols=86 Identities=10% Similarity=0.005 Sum_probs=52.5
Q ss_pred HHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-C------------cCHHHHHHHHHHHHh
Q 039177 293 EAGIKMIA-CMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGI-V------------LNLQTYSIMIDGLAS 358 (453)
Q Consensus 293 ~~a~~~~~-~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~------------p~~~~~~~li~~~~~ 358 (453)
++..+.+. .+.+.|+..+......++... .|++..|..+++.+...|- . ++......+++++.
T Consensus 181 ~~i~~~l~~il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~- 257 (509)
T PRK14958 181 LQIAAHCQHLLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA- 257 (509)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-
Confidence 33344433 344567777777766666553 5889999999887765431 1 22333344444444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCh
Q 039177 359 KGDIIEACGLLEEALNKGLCTQS 381 (453)
Q Consensus 359 ~g~~~~A~~~~~~m~~~~~~~~~ 381 (453)
.|+.+.+..+++++...|..+..
T Consensus 258 ~~d~~~~l~~~~~l~~~g~~~~~ 280 (509)
T PRK14958 258 AKAGDRLLGCVTRLVEQGVDFSN 280 (509)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHH
Confidence 37778888888888877765543
No 466
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=32.06 E-value=1.2e+02 Score=22.48 Aligned_cols=37 Identities=22% Similarity=0.159 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCC
Q 039177 360 GDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGL 396 (453)
Q Consensus 360 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 396 (453)
+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 14 ~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 14 DGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 3333444444444444433344443333444444443
No 467
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=31.94 E-value=2.1e+02 Score=20.99 Aligned_cols=22 Identities=9% Similarity=0.327 Sum_probs=13.8
Q ss_pred HHHHHHHhcCChhHHHHHHhhc
Q 039177 121 DLIKTYADAHRFQDSVNLFYKI 142 (453)
Q Consensus 121 ~li~~~~~~g~~~~A~~~~~~~ 142 (453)
.++.-|...|+.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 4555666667777777776664
No 468
>PRK10941 hypothetical protein; Provisional
Probab=31.27 E-value=3.8e+02 Score=23.80 Aligned_cols=58 Identities=12% Similarity=-0.171 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 316 TLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALN 374 (453)
Q Consensus 316 ~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 374 (453)
.+-.+|.+.++++.|+++.+.+....+. +..-+.--.-.|.+.|.+..|..=++...+
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3444455555555555555555544332 333333333344555555555554444443
No 469
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=31.19 E-value=6.1e+02 Score=26.21 Aligned_cols=98 Identities=21% Similarity=0.231 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCccChHhHHHHHH
Q 039177 98 DISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCVDGKTCSLILS 177 (453)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 177 (453)
+....+.++.+..|+..+......+++.. .|+...|+.+++.+...+.+.+. .+....|. |. .+......++.
T Consensus 182 eI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It--~e~V~~lL--G~-~d~~~If~Lld 254 (709)
T PRK08691 182 QVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVA--ENDVRQMI--GA-VDKQYLYELLT 254 (709)
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcC--HHHHHHHH--cc-cCHHHHHHHHH
Confidence 33444555555556666665555555443 47777777777664433222111 12222222 21 23334555555
Q ss_pred HHHhcCCCChHHHHHHHHHHHHcCCCcC
Q 039177 178 SVCEQRDLSSDELLGFVQEMKKLGFCFG 205 (453)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~ 205 (453)
++.. ++. ..++.+++++...|+.+.
T Consensus 255 AL~~-~d~--~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 255 GIIN-QDG--AALLAKAQEMAACAVGFD 279 (709)
T ss_pred HHHc-CCH--HHHHHHHHHHHHhCCCHH
Confidence 5554 555 778888888888775443
No 470
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=31.01 E-value=2.4e+02 Score=21.47 Aligned_cols=42 Identities=12% Similarity=0.172 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 039177 294 AGIKMIACMEELGSKPD-VITYNTLLQALCKVRELNRLRELVK 335 (453)
Q Consensus 294 ~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~ 335 (453)
.+.++|..|...|+-.. ...|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444444444443322 2234444444444455555544443
No 471
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=30.05 E-value=3.3e+02 Score=23.61 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=13.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039177 310 DVITYNTLLQALCKVRELNRLRELVKEMK 338 (453)
Q Consensus 310 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 338 (453)
+..+...+..++...|+...+..+++.+.
T Consensus 131 ~~Y~lAl~aYAL~la~~~~~~~~~~~~L~ 159 (246)
T PF07678_consen 131 DPYTLALVAYALALAGDSPQASKLLNKLN 159 (246)
T ss_dssp SHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 44444444444444444455555544443
No 472
>PRK14700 recombination factor protein RarA; Provisional
Probab=30.00 E-value=4.2e+02 Score=23.92 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHhc---CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 039177 207 VDYTNVIRSLVKK---EKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQE 255 (453)
Q Consensus 207 ~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 255 (453)
..+..+|+++.+. .+.+.|+-++.+|.+.|-.|....-..++-++-..|
T Consensus 124 d~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIG 175 (300)
T PRK14700 124 KEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIG 175 (300)
T ss_pred chhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3444556666543 667777777777777776666666666666665555
No 473
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.99 E-value=5.4e+02 Score=25.19 Aligned_cols=36 Identities=25% Similarity=0.354 Sum_probs=20.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 039177 205 GMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPD 240 (453)
Q Consensus 205 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 240 (453)
+...+..++++....+....|+.+++++.+.|..|.
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~ 282 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIY 282 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHH
Confidence 344445555555544445566677777766665543
No 474
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=29.89 E-value=7.8e+02 Score=27.03 Aligned_cols=186 Identities=15% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 039177 243 CYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALC 322 (453)
Q Consensus 243 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 322 (453)
++..+..++.-.....++..+..+|.-.|-..++.----++..|..-| ++.|..-++.|...-..+|...+..+..+|-
T Consensus 525 ~vq~l~d~~sf~~~ms~~~~ii~~ll~s~t~teV~E~Idfl~~c~~F~-I~gae~~irkMl~LVWskd~~i~e~v~~ayk 603 (1251)
T KOG0414|consen 525 LVQFLEDAISFSDEMSEAIPIISQLLFSKTTTEVKEAIDFLVRCKQFG-IDGAEFGIRKMLPLVWSKDKEIREAVENAYK 603 (1251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhC-CCcHHHHHHHHhhhhhCCCccHHHHHHHHHH
Q ss_pred h-------cCCHHH----HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHH-----HHHHHHHHHCCCCCChhhHHH
Q 039177 323 K-------VRELNR----LRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEA-----CGLLEEALNKGLCTQSSMFDE 386 (453)
Q Consensus 323 ~-------~~~~~~----a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A-----~~~~~~m~~~~~~~~~~~~~~ 386 (453)
+ .+...+ |..++..+....+. +..+...++..++..|.++.+ +++| .+...|.......-..
T Consensus 604 ~l~~~~~~n~~~~e~~~ia~NL~~l~~~~s~~-d~~slE~vl~~lv~~~~Id~~Vi~~Lw~~f-tlq~~~~~~~q~~~sl 681 (1251)
T KOG0414|consen 604 QLYFRPDGNSKASEASSIAQNLSKLLIDASIG-DLTSLEEVLCELVARGYIDAAVINKLWEIF-TLQKKGTTNEQSRGSL 681 (1251)
T ss_pred HHhccCCCCchhhHHHHHHHHHHHHHhccccc-chhhHHHHHHHHHhCCCccHHHHHHHHHHH-HHHhccCchhhhccce
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHhchhcchhh
Q 039177 387 TICGLCQRGLVRKALELLKQMADKDVSPGARVWEALLLSSVSKLDF 432 (453)
Q Consensus 387 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~~~~ 432 (453)
.|.+....+..+-+..=.+.+.+.|+.+ .....-++..|..-.+.
T Consensus 682 ~iL~M~s~s~~~Iv~~~~~~lv~iglg~-p~l~~~~L~~~s~i~~~ 726 (1251)
T KOG0414|consen 682 IILGMASRSKPSIVLANLDLLVQIGLGE-PRLAVDVLARYSNIVDP 726 (1251)
T ss_pred eehhhhhccChhhhhhhhHHHHHhccCc-HHHHHHHHHHHHHhhcc
No 475
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=29.42 E-value=2e+02 Score=20.08 Aligned_cols=35 Identities=9% Similarity=0.063 Sum_probs=17.8
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 039177 220 EKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYV 258 (453)
Q Consensus 220 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 258 (453)
...+.+.++++.+..+ ...+|..+..++...|...
T Consensus 44 tr~~q~~~LLd~L~~R----G~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 44 SRRDQARQLLIDLETR----GKQAFPAFLSALRETGQTD 78 (84)
T ss_pred CHHHHHHHHHHHHHhc----CHHHHHHHHHHHHhcCchH
Confidence 3455555555555554 3335555555555544433
No 476
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.39 E-value=6.2e+02 Score=25.75 Aligned_cols=84 Identities=15% Similarity=0.123 Sum_probs=51.8
Q ss_pred HHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-C------------cCHHHHHHHHHHHHh
Q 039177 293 EAGIKMIAC-MEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGI-V------------LNLQTYSIMIDGLAS 358 (453)
Q Consensus 293 ~~a~~~~~~-m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~------------p~~~~~~~li~~~~~ 358 (453)
++..+.+.. +.+.|+..+......++. ...|++..+..+++++...+- . ++......+++++..
T Consensus 186 eei~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~ 263 (618)
T PRK14951 186 ETVLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQ 263 (618)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 444444443 445677777777777766 345889999988877654431 1 123333444555443
Q ss_pred cCCHHHHHHHHHHHHHCCCCC
Q 039177 359 KGDIIEACGLLEEALNKGLCT 379 (453)
Q Consensus 359 ~g~~~~A~~~~~~m~~~~~~~ 379 (453)
|+...++.+++++.+.|..+
T Consensus 264 -~d~~~al~~l~~l~~~G~~~ 283 (618)
T PRK14951 264 -GDGRTVVETADELRLNGLSA 283 (618)
T ss_pred -CCHHHHHHHHHHHHHcCCCH
Confidence 77778888888887776543
No 477
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=29.06 E-value=1.3e+02 Score=20.37 Aligned_cols=36 Identities=11% Similarity=0.166 Sum_probs=19.5
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 039177 219 KEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQ 254 (453)
Q Consensus 219 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 254 (453)
.|+.+.+.+++++..+.|..|.......+..+..+.
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~i 49 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEI 49 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 455666666666666666555555444454444433
No 478
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=29.05 E-value=3.8e+02 Score=23.23 Aligned_cols=137 Identities=10% Similarity=0.066 Sum_probs=80.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 039177 210 TNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQ 289 (453)
Q Consensus 210 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 289 (453)
...|..|.+.-++.-|-...++..+ ...+ ...+--|.+..+..--.++.+-....++.-+.....+++ +...
T Consensus 134 RRtMEiyS~ttRFalaCN~s~KIiE-----PIQS-RCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~ 205 (333)
T KOG0991|consen 134 RRTMEIYSNTTRFALACNQSEKIIE-----PIQS-RCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQ 205 (333)
T ss_pred HHHHHHHcccchhhhhhcchhhhhh-----hHHh-hhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhcc
Confidence 3345555555555555555544442 1222 222333555555444445555455566666666666654 5678
Q ss_pred CCHHHHHHHHHHHHHC-C-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 039177 290 NNVEAGIKMIACMEEL-G-----------SKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGL 356 (453)
Q Consensus 290 ~~~~~a~~~~~~m~~~-~-----------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 356 (453)
|+..+|+..++.-... | -.|.+.....++..|. .+++++|.+++.++-+.|+.|.. ..+.+.+.+
T Consensus 206 GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~ 282 (333)
T KOG0991|consen 206 GDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED-IITTLFRVV 282 (333)
T ss_pred chHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHH
Confidence 8888888887765531 1 1356666666666654 46889999999998888888543 444555544
No 479
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=29.05 E-value=3.7e+02 Score=23.04 Aligned_cols=98 Identities=14% Similarity=0.096 Sum_probs=48.4
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH
Q 039177 273 VPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKP---DVITY--NTLLQALCKVRELNRLRELVKEMKWKGIVLNLQ 347 (453)
Q Consensus 273 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 347 (453)
.+...-+|.|+--|.-...+.+|-..|.. ..|+.| |..++ ..-|....+.|++++|+.....+--.-+.-|..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 44555555555555555555555555543 223333 23222 344566677777777777766654332222332
Q ss_pred HHHHHHH----HHHhcCCHHHHHHHHHHH
Q 039177 348 TYSIMID----GLASKGDIIEACGLLEEA 372 (453)
Q Consensus 348 ~~~~li~----~~~~~g~~~~A~~~~~~m 372 (453)
.+-.|.. =..+.|..++|+++++.=
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 2222111 124456666666666543
No 480
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=28.61 E-value=2.5e+02 Score=20.99 Aligned_cols=97 Identities=21% Similarity=0.162 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039177 293 EAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEA 372 (453)
Q Consensus 293 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 372 (453)
+.+..++..+.+.|+--|.......+....+.+.+ .-..+-..+.++|+.++ +....+. .....+.|..+.++-
T Consensus 9 e~I~~vi~~l~~~gyidD~~ya~~~v~~~~~~~~~-G~~~I~~~L~~kGi~~~--~i~~~l~---~~~~~e~a~~~~~kk 82 (121)
T PF02631_consen 9 EAIEEVIDRLKELGYIDDERYAESYVRSRLRRKGK-GPRRIRQKLKQKGIDRE--IIEEALE---EYDEEEEALELAEKK 82 (121)
T ss_dssp HHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHTT---HHHHHHHHHHTT--HH--HHHHHHT---CS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHhcccccc-cHHHHHHHHHHHCCChH--HHHHHHH---HhhHHHHHHHHHHHH
Confidence 33445555555555544444444444444432221 22344445555555422 2222222 112223344444433
Q ss_pred HHCC-CCCChhhHHHHHHHHHhCC
Q 039177 373 LNKG-LCTQSSMFDETICGLCQRG 395 (453)
Q Consensus 373 ~~~~-~~~~~~~~~~li~~~~~~g 395 (453)
.... -.++.....-++..+.+.|
T Consensus 83 ~~~~~~~~~~~~~~K~~~~L~rrG 106 (121)
T PF02631_consen 83 YRRYRKPSDRKRKQKLIRFLMRRG 106 (121)
T ss_dssp HHHTTTS-CHHHHHHHHHHHHHTT
T ss_pred HhcccCCCCHHHHHHHHHHHHHCC
Confidence 3322 2334444555555555555
No 481
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=28.40 E-value=1.1e+02 Score=22.94 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=22.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCC
Q 039177 351 IMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGL 396 (453)
Q Consensus 351 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 396 (453)
.++..+...+..-.|.++++.+.+.+...+..|.-.-+..+.+.|-
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 3444444444455556666666555555555544444444444443
No 482
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=28.35 E-value=1.7e+02 Score=18.96 Aligned_cols=15 Identities=0% Similarity=-0.042 Sum_probs=5.9
Q ss_pred cCCHHHHHHHHHHHH
Q 039177 289 QNNVEAGIKMIACME 303 (453)
Q Consensus 289 ~~~~~~a~~~~~~m~ 303 (453)
.|++=+|-++++.+-
T Consensus 12 ~g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 12 AGDFFEAHEVLEELW 26 (62)
T ss_dssp TT-HHHHHHHHHHHC
T ss_pred CCCHHHhHHHHHHHH
Confidence 344444444444443
No 483
>PHA03100 ankyrin repeat protein; Provisional
Probab=27.87 E-value=5.6e+02 Score=24.74 Aligned_cols=233 Identities=13% Similarity=0.088 Sum_probs=114.5
Q ss_pred HHHHHHHhcCChhHHHHHHhhcccCC----CC------------cHHHHHHHHHHHHHCCCccChH---hHHHHHHHHH-
Q 039177 121 DLIKTYADAHRFQDSVNLFYKIPKFR----IN------------RVGFAIEILNCMINDGFCVDGK---TCSLILSSVC- 180 (453)
Q Consensus 121 ~li~~~~~~g~~~~A~~~~~~~~~~~----~~------------~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~- 180 (453)
+.+...++.|+.+-+..+++.-...+ .+ -.....++.+.+.+.|..++.. ..+.+..+..
T Consensus 37 t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~ 116 (480)
T PHA03100 37 LPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISK 116 (480)
T ss_pred hhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhc
Confidence 34455566777776666665422211 11 1122345667777777766443 3445554443
Q ss_pred hcCCCChHHHHHHHHHHHHcCCCcChhh--HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCC
Q 039177 181 EQRDLSSDELLGFVQEMKKLGFCFGMVD--YTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCY--TMVLNGVIVQED 256 (453)
Q Consensus 181 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~--~~ll~~~~~~g~ 256 (453)
..|+. ++++.+.+.|..++... ..+.+..++..|. .-.++++.+.+.|..++.... .+.+...+..|+
T Consensus 117 ~~~~~------~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~ 188 (480)
T PHA03100 117 KSNSY------SIVEYLLDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGN 188 (480)
T ss_pred ccChH------HHHHHHHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCC
Confidence 44443 34455566775543322 2355666666662 123445556666665543221 234455566676
Q ss_pred HHHHHHHHHHHHHCCCCCChhhH--------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcC
Q 039177 257 YVKAEELFDELLVLGLVPDVYTY--------NVYINGLCKQNNVEAGIKMIACMEELGSKPDV---ITYNTLLQALCKVR 325 (453)
Q Consensus 257 ~~~a~~~~~~m~~~g~~~~~~~~--------~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~ 325 (453)
.+ +.+.+.+.|..++.... ...+...+..|+ ...++.+.+.+.|..++. .-.+.|. ..+..|
T Consensus 189 ~~----iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~iv~~Ll~~g~din~~d~~g~TpL~-~A~~~~ 261 (480)
T PHA03100 189 ID----VIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNE--ITLEVVNYLLSYGVPINIKDVYGFTPLH-YAVYNN 261 (480)
T ss_pred HH----HHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHHHHHHHHcCCCCCCCCCCCCCHHH-HHHHcC
Confidence 54 44455566765553311 334444455555 113445555666655443 2333443 334556
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 039177 326 ELNRLRELVKEMKWKGIVLNLQT---YSIMIDGLASKGDIIEACGLLEEALNKGL 377 (453)
Q Consensus 326 ~~~~a~~~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 377 (453)
+.+ +++.+.+.|..++... .+.+.. ....|..+ +++.+.+.|.
T Consensus 262 ~~~----iv~~Ll~~gad~n~~d~~g~tpl~~-A~~~~~~~----iv~~Ll~~g~ 307 (480)
T PHA03100 262 NPE----FVKYLLDLGANPNLVNKYGDTPLHI-AILNNNKE----IFKLLLNNGP 307 (480)
T ss_pred CHH----HHHHHHHcCCCCCccCCCCCcHHHH-HHHhCCHH----HHHHHHhcCC
Confidence 644 4455566666554332 223322 23445544 4445555664
No 484
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=27.84 E-value=3.9e+02 Score=23.18 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 258 VKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEE 304 (453)
Q Consensus 258 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 304 (453)
+.|..+++.-.. -..+..+...+..++...|+...+..+++.+..
T Consensus 116 ~kA~~~L~~~~~--~~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~ 160 (246)
T PF07678_consen 116 NKALNYLERHLD--NIQDPYTLALVAYALALAGDSPQASKLLNKLNS 160 (246)
T ss_dssp HHHHHHHHHHHG--CTSSHHHHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcc--ccCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 344444444322 124555555555555666667777777777653
No 485
>smart00139 MyTH4 Domain in Myosin and Kinesin Tails. Domain present twice in myosin-VIIa, and also present in 3 other myosins.
Probab=27.77 E-value=1.8e+02 Score=22.87 Aligned_cols=26 Identities=12% Similarity=0.396 Sum_probs=12.2
Q ss_pred hchhcchhhHHHHHHHHHHhhhcCCC
Q 039177 424 LSSVSKLDFVNTSFIRLVDQILNTPC 449 (453)
Q Consensus 424 ~a~~~~~~~~~~~~~~~~~~~~~~p~ 449 (453)
..+..+...-++.+-.++++..++|.
T Consensus 53 ~~~~~~~~LrDEiy~QLiKQtt~Np~ 78 (144)
T smart00139 53 QKGLAHPELRDEIYCQLIKQLTDNPS 78 (144)
T ss_pred HHHhccHHHHHHHHHHHHHHHhCCCC
Confidence 33444444444444555555554444
No 486
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=27.62 E-value=6.7e+02 Score=25.52 Aligned_cols=88 Identities=14% Similarity=0.005 Sum_probs=35.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHh---
Q 039177 318 LQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKG-LCTQSSMFDETICGLCQ--- 393 (453)
Q Consensus 318 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~--- 393 (453)
...+.-.|+++.|.+.+.. ..+...+.+.+.+.+.-| |-+......-..+.... -.|...-+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~---gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYY---GLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHT---T------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHc---CCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3445556777777777665 122233444444333332 22221111112221110 01111346777777765
Q ss_pred CCCHHHHHHHHHHHhhC
Q 039177 394 RGLVRKALELLKQMADK 410 (453)
Q Consensus 394 ~g~~~~A~~~~~~m~~~ 410 (453)
..+..+|.+++--+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 35677788877776643
No 487
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=27.54 E-value=5.1e+02 Score=24.16 Aligned_cols=126 Identities=12% Similarity=0.005 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHH
Q 039177 113 ETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLG 192 (453)
Q Consensus 113 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~ 192 (453)
|-.+.+...+-..+...|+.+.|.++.++ |+-.|+......+.+. .. -...|..
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleR-----------ALf~~e~~~~~~F~~~-------~~-~~~~g~~------- 90 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLER-----------ALFAFERAFHPSFSPF-------RS-NLTSGNC------- 90 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHH-----------HHHHHHHHHHHHhhhh-------hc-ccccCcc-------
Confidence 55666888888889999999999988876 5555555443332110 00 0000000
Q ss_pred HHHHHHHcCCCcChhhHH---HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 039177 193 FVQEMKKLGFCFGMVDYT---NVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVI-VQEDYVKAEELFDELL 268 (453)
Q Consensus 193 ~~~~~~~~g~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~m~ 268 (453)
-......-|...|- ..|..+.+.|.+..|+++.+-+...++.-|......+|..|+ +.++++-.+++.+...
T Consensus 91 ----rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 91 ----RLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred ----ccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 00000111222222 224555566666666666666666555445555555555554 4455555555555543
No 488
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=27.45 E-value=2.6e+02 Score=26.36 Aligned_cols=131 Identities=15% Similarity=0.118 Sum_probs=70.0
Q ss_pred HHHHHHHcCCCcChhh---HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH--H--HHHhcCCHHHHHHHHH
Q 039177 193 FVQEMKKLGFCFGMVD---YTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVL--N--GVIVQEDYVKAEELFD 265 (453)
Q Consensus 193 ~~~~~~~~g~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll--~--~~~~~g~~~~a~~~~~ 265 (453)
+++.+.+.|+.|+..+ -.+++.++.-.+..++..+++.... .+...+...- . .+...+........+.
T Consensus 101 v~kaL~e~gl~p~~i~GtS~Gaivaa~~a~~~~~e~~~~l~~~~-----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 175 (391)
T cd07229 101 VVKALWLRGLLPRIITGTATGALIAALVGVHTDEELLRFLDGDG-----IDLSAFNRLRGKKSLGYSGYGWLGTLGRRIQ 175 (391)
T ss_pred HHHHHHHcCCCCceEEEecHHHHHHHHHHcCCHHHHHHHHhccc-----hhhhhhhhhccccccccccccccchHHHHHH
Confidence 5566778888888655 5566666666666666666654311 0111111100 0 0111111222334445
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH----------------HCCCCCCHHHHHHHHHHHHhcCCHH
Q 039177 266 ELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACME----------------ELGSKPDVITYNTLLQALCKVRELN 328 (453)
Q Consensus 266 ~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----------------~~~~~p~~~~~~~li~~~~~~~~~~ 328 (453)
.+.+.|.-.|...+...+..+...-.+++|.+--.... ..--.||+..|+++...|+--+-+.
T Consensus 176 r~l~~G~l~D~~~l~~~lr~~lgd~TFeEAy~rTgriLnItv~~~~~~~~p~LLNylTaPnVlIwsAv~aS~a~p~~~~ 254 (391)
T cd07229 176 RLLREGYFLDVKVLEEFVRANLGDLTFEEAYARTGRVLNITVAPSAVSGSPNLLNYLTAPNVLIWSAALASNASSAALY 254 (391)
T ss_pred HHHcCCCcccHHHHHHHHHHHcCCCcHHHHHHhhCCEEEEEEECCCCCCCCeeeecCCCCCchHHHHHHHHcCCccccC
Confidence 55556656677777666666665556666654322221 1112488888998888877655444
No 489
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=27.41 E-value=2.2e+02 Score=19.88 Aligned_cols=36 Identities=14% Similarity=0.264 Sum_probs=19.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 039177 254 QEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVE 293 (453)
Q Consensus 254 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~ 293 (453)
..+.+.+.++++.+...| ..+|..+..+....|...
T Consensus 43 ~tr~~q~~~LLd~L~~RG----~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 43 GSRRDQARQLLIDLETRG----KQAFPAFLSALRETGQTD 78 (84)
T ss_pred CCHHHHHHHHHHHHHhcC----HHHHHHHHHHHHhcCchH
Confidence 344555666666555544 455555555555555433
No 490
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.09 E-value=7.7e+02 Score=26.06 Aligned_cols=343 Identities=15% Similarity=0.100 Sum_probs=159.5
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHcCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHhhcccCC--------CCcHHHHHH
Q 039177 86 VIKTLAENSQFCDISSVLDHIEKRENFETPE--FIFIDLIKTYADAHRFQDSVNLFYKIPKFR--------INRVGFAIE 155 (453)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~a~~ 155 (453)
+=+.|...|+++.|+++-+. +|+. .++..-.+.|...+++..|.++|.++.+.- ..+-++++.
T Consensus 364 vWk~yLd~g~y~kAL~~ar~-------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FEEVaLKFl~~~~~~~L~ 436 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIART-------RPDALETVLLKQADFLFQDKEYLRAAEIYAETLSSFEEVALKFLEINQERALR 436 (911)
T ss_pred HHHHHHhcchHHHHHHhccC-------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHhcCCHHHHH
Confidence 34556667777777655432 2221 244444566667777777777777653321 223333555
Q ss_pred HHHHHHHCCCccChHhHHH-----HHHHH-HhcCCCC-h-HHHHHHHHHH--------HHc-CCCcChhhHHHHHHHHHh
Q 039177 156 ILNCMINDGFCVDGKTCSL-----ILSSV-CEQRDLS-S-DELLGFVQEM--------KKL-GFCFGMVDYTNVIRSLVK 218 (453)
Q Consensus 156 ~~~~m~~~~~~p~~~~~~~-----ll~~~-~~~~~~~-~-~~a~~~~~~~--------~~~-g~~~~~~~~~~li~~~~~ 218 (453)
.|-.=+-..++|...+-.. ++..+ .+.++.+ . +++..-++.- ... ....+-....+.-..+..
T Consensus 437 ~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~ 516 (911)
T KOG2034|consen 437 TFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLAS 516 (911)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHH
Confidence 5433333334443332222 22221 2222221 0 2222222111 110 111122234444455556
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------------------------CCC
Q 039177 219 KEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVL-------------------------GLV 273 (453)
Q Consensus 219 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-------------------------g~~ 273 (453)
.|+.+....+-.-+.+ |..++.-+...+.+++|++++..-... +-.
T Consensus 517 ~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~~~el~yk~ap~Li~~~p~~tV~~wm~~~d~ 587 (911)
T KOG2034|consen 517 HGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQRNPELFYKYAPELITHSPKETVSAWMAQKDL 587 (911)
T ss_pred ccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHhhhHHHhcCcHHHHHHHHHcccc
Confidence 6666666655544432 455666677777777777666432110 001
Q ss_pred CChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 039177 274 PDVYTYNVYINGLCKQN---NVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYS 350 (453)
Q Consensus 274 ~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 350 (453)
.+......++..+.+.+ ....+...++.....-..-+...+|.++..|++..+-+.-. .++.....+-. ...-..
T Consensus 588 ~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ll~-~le~~~~~~~~-~~YDl~ 665 (911)
T KOG2034|consen 588 DPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDLLL-YLEIIKFMKSR-VHYDLD 665 (911)
T ss_pred CchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccchHH-HHHHHhhcccc-ceecHH
Confidence 12222334444444442 33344444444433323346778888888888765533322 22222211111 111123
Q ss_pred HHHHHHHhcCC------HHHHHHHHHHHHHCCCCCCh------------------hhHHHHHHHH-HhCCCHHHHHHHHH
Q 039177 351 IMIDGLASKGD------IIEACGLLEEALNKGLCTQS------------------SMFDETICGL-CQRGLVRKALELLK 405 (453)
Q Consensus 351 ~li~~~~~~g~------~~~A~~~~~~m~~~~~~~~~------------------~~~~~li~~~-~~~g~~~~A~~~~~ 405 (453)
..++.|.+.+. +..+..+|..+.+.-+..|. ..|-.+...+ .+..+..+|+.++.
T Consensus 666 ~alRlc~~~~~~ra~V~l~~~l~l~~~aVdlAL~~d~dlak~~A~~~ee~e~lrKkLWLkIAkh~v~~~~~ikk~i~~Lk 745 (911)
T KOG2034|consen 666 YALRLCLKFKKTRACVFLLCMLNLFEDAVDLALQFDIDLAKVIANDPEEDEDLRKKLWLKIAKHVVKQENDIKKAIRFLK 745 (911)
T ss_pred HHHHHHHHhCccceeeeHHHHHHHHHHHHHHHhhcCHHHHhhhhcChhhHHHHHHHHHHHHHHHHHHhhccHHHHHHHhc
Confidence 33444444442 23344444444332111111 1222222222 23356777877776
Q ss_pred HHh-----h-CCCCCCHHHHHHHHhchhcchhhHHHHHHHHHHhhhc
Q 039177 406 QMA-----D-KDVSPGARVWEALLLSSVSKLDFVNTSFIRLVDQILN 446 (453)
Q Consensus 406 ~m~-----~-~~~~p~~~~~~~ll~a~~~~~~~~~~~~~~~~~~~~~ 446 (453)
.-. + ..+.|+..+...+=.+.+...+..+...+++..+|.+
T Consensus 746 ~~~lLkiedlLpffpdf~~id~~keaic~~L~~~n~rieel~~em~e 792 (911)
T KOG2034|consen 746 ENELLTIEDLLPFFPDFTKIDNLKEAICDFLEDYNKRIEELQEEMIE 792 (911)
T ss_pred cCcccchhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 510 0 1467888888888777777777666666666665544
No 491
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=27.01 E-value=4.4e+02 Score=23.20 Aligned_cols=193 Identities=18% Similarity=0.086 Sum_probs=0.0
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCChhhHHHHHHHHHhcCCH
Q 039177 217 VKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVL----GLVPDVYTYNVYINGLCKQNNV 292 (453)
Q Consensus 217 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~~~~li~~~~~~~~~ 292 (453)
.+.+++++|++++..-.. .+.+.|+...|-++-..+++. +.+.|......++..+...+.-
T Consensus 1 v~~kky~eAidLL~~Ga~---------------~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~ 65 (260)
T PF04190_consen 1 VKQKKYDEAIDLLYSGAL---------------ILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPE 65 (260)
T ss_dssp HHTT-HHHHHHHHHHHHH---------------HHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT
T ss_pred CccccHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCC
Q ss_pred H-HHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 039177 293 E-AGIKMIACMEE-----LGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEAC 366 (453)
Q Consensus 293 ~-~a~~~~~~m~~-----~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 366 (453)
+ +-.++.+.+.+ ..-.-|......+...|.+.|++.+|+..|-.-... +...+..++.-....|...++-
T Consensus 66 ~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~----~~~~~~~ll~~~~~~~~~~e~d 141 (260)
T PF04190_consen 66 EPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDP----SAFAYVMLLEEWSTKGYPSEAD 141 (260)
T ss_dssp -TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HH----HHHHHHHHHHHHHHHTSS--HH
T ss_pred cchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCCh----hHHHHHHHHHHHHHhcCCcchh
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhC-------------CCCCCHHHHHHHHhchhcchhhH
Q 039177 367 GLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADK-------------DVSPGARVWEALLLSSVSKLDFV 433 (453)
Q Consensus 367 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------------~~~p~~~~~~~ll~a~~~~~~~~ 433 (453)
-++-++ +--|.-.|+...|..+++...+. ++.++....+-+--....-....
T Consensus 142 lfi~Ra---------------VL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~ 206 (260)
T PF04190_consen 142 LFIARA---------------VLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDN 206 (260)
T ss_dssp HHHHHH---------------HHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-
T ss_pred HHHHHH---------------HHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCc
Q ss_pred HHHHHHHHHh
Q 039177 434 NTSFIRLVDQ 443 (453)
Q Consensus 434 ~~~~~~~~~~ 443 (453)
...|..+.++
T Consensus 207 ~~~F~~L~~~ 216 (260)
T PF04190_consen 207 LPLFKKLCEK 216 (260)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
No 492
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=26.51 E-value=1.4e+02 Score=28.50 Aligned_cols=105 Identities=15% Similarity=0.078 Sum_probs=65.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 039177 283 INGLCKQNNVEAGIKMIACMEELGSKPDVITY-NTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGD 361 (453)
Q Consensus 283 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 361 (453)
.+-+.+.+.++.|..++...++. .|+...| ..=-.++.+.+++..|+.=+...++..+. ....|-.=..++.+.++
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHH
Confidence 34456677888899998888884 4655443 33337888888888888777777776422 22233333344555566
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 039177 362 IIEACGLLEEALNKGLCTQSSMFDETICGLC 392 (453)
Q Consensus 362 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 392 (453)
+.+|...|+.... +.|+..-....+.-|-
T Consensus 88 ~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 88 FKKALLDLEKVKK--LAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHhhh--cCcCcHHHHHHHHHHH
Confidence 6667776666544 4677666665555543
No 493
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=26.50 E-value=2.3e+02 Score=19.91 Aligned_cols=14 Identities=14% Similarity=0.330 Sum_probs=5.2
Q ss_pred CCCCCChhhHHHHH
Q 039177 270 LGLVPDVYTYNVYI 283 (453)
Q Consensus 270 ~g~~~~~~~~~~li 283 (453)
.|+..|...|..++
T Consensus 37 AGv~~dp~VFriil 50 (88)
T PF12926_consen 37 AGVPMDPEVFRIIL 50 (88)
T ss_pred hCCCcChHHHHHHH
Confidence 33333333333333
No 494
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=26.46 E-value=3.9e+02 Score=22.42 Aligned_cols=50 Identities=6% Similarity=0.029 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCC
Q 039177 276 VYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVI-TYNTLLQALCKVRE 326 (453)
Q Consensus 276 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~ 326 (453)
....+.++..|...|+++.|.++|.-+.... ..|.. .|..=+..+.+.+.
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~ 91 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGE 91 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCC
Confidence 4456889999999999999999999999753 34543 23333344444443
No 495
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=26.37 E-value=6.7e+02 Score=25.13 Aligned_cols=255 Identities=13% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039177 188 DELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDEL 267 (453)
Q Consensus 188 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 267 (453)
+...++.+.....--.+....+..|+..+.... .+.-.++++++.. .. ...+..++++....|-......+.+.+
T Consensus 292 ~~l~~L~~~~~~~~~~~~~~~f~~lv~~lR~~~-~e~l~~l~~~~~~-~~---~~~r~~~~Dal~~~GT~~a~~~i~~~i 366 (574)
T smart00638 292 EVLKHLVQDIASDVQEPAAAKFLRLVRLLRTLS-EEQLEQLWRQLYE-KK---KKARRIFLDAVAQAGTPPALKFIKQWI 366 (574)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhCC-HHHHHHHHHHHHh-CC---HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q ss_pred HHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCC-------HHHHHH
Q 039177 268 LVLGLVP-DVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDV-------ITYNTLLQALCKVRE-------LNRLRE 332 (453)
Q Consensus 268 ~~~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~~~-------~~~a~~ 332 (453)
....+.+ .....-..+-.....-..+-...+++-+......+.. .+|..++.-+|.... -+-...
T Consensus 367 ~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~ 446 (574)
T smart00638 367 KNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKY 446 (574)
T ss_pred HcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHH
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhC--CCHHHHHHHHHHHhhC
Q 039177 333 LVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQR--GLVRKALELLKQMADK 410 (453)
Q Consensus 333 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~ 410 (453)
+.+.+.+.--.-|..--...|.++...|. ..+...+..............-...+.++.+. ...+++..++-..-..
T Consensus 447 l~~~l~~~~~~~~~~~~~~~LkaLGN~g~-~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n 525 (574)
T smart00638 447 LHELLQQAVSKGDEEEIQLYLKALGNAGH-PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLN 525 (574)
T ss_pred HHHHHHHHHhcCCchheeeHHHhhhccCC-hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcC
Q ss_pred CCCCCHHHHHHHHhchhcchhhHHHHHHHHHHhhhcCCCC
Q 039177 411 DVSPGARVWEALLLSSVSKLDFVNTSFIRLVDQILNTPCK 450 (453)
Q Consensus 411 ~~~p~~~~~~~ll~a~~~~~~~~~~~~~~~~~~~~~~p~~ 450 (453)
.-.+...-..+++ ..-+.++....+..+.+....+|..
T Consensus 526 ~~e~~EvRiaA~~--~lm~t~P~~~~l~~ia~~l~~E~~~ 563 (574)
T smart00638 526 RAEPPEVRMAAVL--VLMETKPSVALLQRIAELLNKEPNL 563 (574)
T ss_pred CCCChHHHHHHHH--HHHhcCCCHHHHHHHHHHHhhcCcH
No 496
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=26.18 E-value=1.4e+02 Score=23.22 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=22.1
Q ss_pred HHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHh
Q 039177 391 LCQRGLVRKALELLKQMADKDVSPGARVWEALLL 424 (453)
Q Consensus 391 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 424 (453)
+.+.|-+.+...++++|.++|+..+..+|+..+.
T Consensus 119 ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~ 152 (157)
T COG2405 119 AKSKGLISKDKPILDELIEKGFRISRSILEEILR 152 (157)
T ss_pred HHHcCcccchHHHHHHHHHhcCcccHHHHHHHHH
Confidence 3445666666677777777777776666665553
No 497
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=26.16 E-value=3.1e+02 Score=25.91 Aligned_cols=17 Identities=35% Similarity=0.665 Sum_probs=12.9
Q ss_pred CCCCHHHHHHHHhchhc
Q 039177 412 VSPGARVWEALLLSSVS 428 (453)
Q Consensus 412 ~~p~~~~~~~ll~a~~~ 428 (453)
-.||...|.++...|+.
T Consensus 233 TaPnVlIwsAv~aS~a~ 249 (391)
T cd07229 233 TAPNVLIWSAALASNAS 249 (391)
T ss_pred CCCCchHHHHHHHHcCC
Confidence 47888889888877643
No 498
>COG5210 GTPase-activating protein [General function prediction only]
Probab=25.75 E-value=6.5e+02 Score=24.74 Aligned_cols=48 Identities=8% Similarity=0.039 Sum_probs=35.2
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 039177 296 IKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIV 343 (453)
Q Consensus 296 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 343 (453)
-+++..+...|+.....++..++..+.+.-.++.+.++|+.+.-.|..
T Consensus 362 p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~ 409 (496)
T COG5210 362 PELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSS 409 (496)
T ss_pred HHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccH
Confidence 356667777777777777777777777777888888888777766554
No 499
>PRK14700 recombination factor protein RarA; Provisional
Probab=24.93 E-value=5.2e+02 Score=23.34 Aligned_cols=62 Identities=18% Similarity=0.088 Sum_probs=36.7
Q ss_pred HHHHHHHh---cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCC
Q 039177 246 MVLNGVIV---QEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNN-----VEAGIKMIACMEELGS 307 (453)
Q Consensus 246 ~ll~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~-----~~~a~~~~~~m~~~~~ 307 (453)
-+|+++.+ ..|.+.|+-++..|++.|-.|.-..-..++.++-.-|. ...|...++.....|.
T Consensus 128 d~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~ 197 (300)
T PRK14700 128 EQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGM 197 (300)
T ss_pred HHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 35555543 46777888888888887766666666666666655553 2334444444444443
No 500
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=24.88 E-value=2.7e+02 Score=21.53 Aligned_cols=47 Identities=11% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 039177 263 LFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKP 309 (453)
Q Consensus 263 ~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 309 (453)
..+..++.|-.-....+..++-.+...|+++.|+++.+..++.|...
T Consensus 35 ~v~g~L~~g~g~qd~Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~~ 81 (132)
T PF05944_consen 35 WVEGVLASGSGAQDDVLMTVMVWLFDVGDFDGALDIAEYAIEHGLPM 81 (132)
T ss_pred HHHHHHHcCCCCcCchHHhhHhhhhcccCHHHHHHHHHHHHHcCCCc
Done!