Query 039177
Match_columns 453
No_of_seqs 539 out of 2595
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 11:42:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039177.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039177hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 9.3E-34 3.2E-38 270.6 24.5 205 189-393 8-222 (501)
2 4g26_A Pentatricopeptide repea 100.0 1.1E-33 3.9E-38 270.0 25.0 208 151-360 7-224 (501)
3 2xpi_A Anaphase-promoting comp 100.0 4.6E-31 1.6E-35 261.5 41.3 357 76-443 113-579 (597)
4 2xpi_A Anaphase-promoting comp 100.0 6.3E-30 2.2E-34 253.4 38.2 356 78-443 82-545 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.9 5.2E-23 1.8E-27 192.5 40.4 316 79-426 32-349 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 3.5E-23 1.2E-27 193.6 38.5 308 76-415 63-371 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 7.3E-21 2.5E-25 181.4 37.1 314 78-423 24-369 (450)
8 2gw1_A Mitochondrial precursor 99.9 2E-20 6.8E-25 181.5 33.3 344 63-420 24-486 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 1.1E-19 3.8E-24 173.2 31.8 310 101-442 13-357 (450)
10 2gw1_A Mitochondrial precursor 99.9 1.2E-19 4.1E-24 175.9 30.5 350 81-443 7-478 (514)
11 3ieg_A DNAJ homolog subfamily 99.9 5.1E-18 1.7E-22 156.3 39.1 309 79-418 2-341 (359)
12 3fp2_A TPR repeat-containing p 99.8 1E-17 3.5E-22 163.4 34.6 322 77-410 56-491 (537)
13 3hym_B Cell division cycle pro 99.8 1.1E-17 3.8E-22 152.3 30.8 227 175-408 62-297 (330)
14 3fp2_A TPR repeat-containing p 99.8 7.3E-18 2.5E-22 164.4 31.0 352 79-443 24-491 (537)
15 3hym_B Cell division cycle pro 99.8 1.9E-17 6.4E-22 150.7 30.7 296 75-398 17-322 (330)
16 3spa_A Mtrpol, DNA-directed RN 99.8 8.2E-20 2.8E-24 179.7 11.9 114 277-390 128-245 (1134)
17 3spa_A Mtrpol, DNA-directed RN 99.8 1.2E-19 4.1E-24 178.6 10.4 119 205-323 126-248 (1134)
18 1fch_A Peroxisomal targeting s 99.8 2E-17 7E-22 153.1 24.6 288 93-405 38-354 (368)
19 3ieg_A DNAJ homolog subfamily 99.8 1.1E-15 3.8E-20 140.6 35.6 301 115-443 2-335 (359)
20 1fch_A Peroxisomal targeting s 99.8 6.2E-17 2.1E-21 149.8 24.9 290 127-438 36-354 (368)
21 4eqf_A PEX5-related protein; a 99.8 1.7E-16 5.8E-21 146.8 25.7 235 79-339 64-309 (365)
22 3mkr_A Coatomer subunit epsilo 99.8 1.1E-15 3.6E-20 136.4 28.3 251 88-375 7-264 (291)
23 4eqf_A PEX5-related protein; a 99.8 1.2E-16 4.1E-21 147.8 22.6 234 168-409 64-309 (365)
24 3cv0_A Peroxisome targeting si 99.8 4.8E-16 1.6E-20 141.1 26.1 265 117-407 22-312 (327)
25 3cv0_A Peroxisome targeting si 99.8 6.5E-16 2.2E-20 140.2 26.7 267 79-372 20-312 (327)
26 2xm6_A Protein corresponding t 99.7 5E-13 1.7E-17 128.6 45.1 325 58-412 56-434 (490)
27 3mkr_A Coatomer subunit epsilo 99.7 1.9E-15 6.5E-20 134.7 24.5 259 124-420 7-272 (291)
28 1b89_A Protein (clathrin heavy 99.7 9E-17 3.1E-21 146.9 15.9 239 92-393 15-253 (449)
29 2xm6_A Protein corresponding t 99.7 1.5E-12 5.1E-17 125.3 44.8 337 78-444 37-433 (490)
30 2ooe_A Cleavage stimulation fa 99.7 2.7E-13 9.2E-18 131.9 37.6 218 224-446 256-495 (530)
31 3uq3_A Heat shock protein STI1 99.7 2.1E-14 7.2E-19 125.5 24.3 240 169-424 5-254 (258)
32 1b89_A Protein (clathrin heavy 99.7 1E-15 3.6E-20 139.9 15.7 267 78-403 30-304 (449)
33 2pl2_A Hypothetical conserved 99.7 1.8E-14 6.1E-19 122.7 22.4 200 203-408 2-212 (217)
34 2ho1_A Type 4 fimbrial biogene 99.7 7.2E-14 2.5E-18 121.8 26.0 212 206-423 37-249 (252)
35 4g1t_A Interferon-induced prot 99.7 5.9E-13 2E-17 127.4 34.6 318 75-408 46-399 (472)
36 2vq2_A PILW, putative fimbrial 99.7 1.1E-13 3.9E-18 118.0 25.8 214 205-423 7-222 (225)
37 2pl2_A Hypothetical conserved 99.6 3.5E-14 1.2E-18 120.8 21.4 201 166-374 2-213 (217)
38 2ooe_A Cleavage stimulation fa 99.6 1.1E-11 3.8E-16 120.5 40.1 341 62-409 63-491 (530)
39 3uq3_A Heat shock protein STI1 99.6 2.2E-13 7.5E-18 118.9 24.9 226 116-375 5-236 (258)
40 1ouv_A Conserved hypothetical 99.6 3.9E-12 1.3E-16 112.3 31.2 224 168-411 5-252 (273)
41 3u4t_A TPR repeat-containing p 99.6 5.3E-13 1.8E-17 117.7 25.4 246 169-422 3-260 (272)
42 2q7f_A YRRB protein; TPR, prot 99.6 1.2E-13 4.1E-18 119.6 20.8 200 205-409 22-221 (243)
43 1xi4_A Clathrin heavy chain; a 99.6 1.2E-11 4.2E-16 126.3 37.1 296 78-416 983-1313(1630)
44 2ho1_A Type 4 fimbrial biogene 99.6 1.4E-12 4.9E-17 113.5 26.7 202 169-376 37-239 (252)
45 1xnf_A Lipoprotein NLPI; TPR, 99.6 1E-13 3.5E-18 122.4 19.2 245 148-404 19-269 (275)
46 2h6f_A Protein farnesyltransfe 99.6 7.9E-13 2.7E-17 121.9 24.5 242 169-421 97-357 (382)
47 2vq2_A PILW, putative fimbrial 99.6 2.4E-12 8.2E-17 109.7 25.8 209 168-383 7-217 (225)
48 1ouv_A Conserved hypothetical 99.6 1.5E-11 5.2E-16 108.5 31.4 225 114-376 4-252 (273)
49 2q7f_A YRRB protein; TPR, prot 99.6 4.2E-13 1.4E-17 116.1 20.8 203 167-376 21-223 (243)
50 3u4t_A TPR repeat-containing p 99.6 8E-13 2.7E-17 116.5 22.9 164 209-375 77-250 (272)
51 4g1t_A Interferon-induced prot 99.6 1.3E-11 4.5E-16 118.0 32.8 283 113-413 48-366 (472)
52 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.1E-13 1.1E-17 119.3 19.2 225 182-416 18-248 (275)
53 2h6f_A Protein farnesyltransfe 99.5 6.4E-12 2.2E-16 115.8 26.6 248 80-356 97-363 (382)
54 4a1s_A PINS, partner of inscut 99.5 1.2E-12 4.2E-17 122.8 20.9 239 82-338 50-330 (411)
55 3sf4_A G-protein-signaling mod 99.5 1.8E-12 6E-17 121.3 21.0 302 78-397 7-363 (406)
56 2ond_A Cleavage stimulation fa 99.5 3.6E-11 1.2E-15 108.1 27.8 216 188-409 33-269 (308)
57 1xi4_A Clathrin heavy chain; a 99.5 1.5E-10 5.3E-15 118.3 34.4 308 82-433 1024-1372(1630)
58 3vtx_A MAMA; tetratricopeptide 99.5 1.6E-11 5.3E-16 101.3 22.9 166 205-374 4-169 (184)
59 3ro2_A PINS homolog, G-protein 99.5 3.9E-12 1.3E-16 115.4 20.4 279 82-409 7-331 (338)
60 3vtx_A MAMA; tetratricopeptide 99.5 1.7E-11 6E-16 101.0 22.3 174 240-419 4-177 (184)
61 4a1s_A PINS, partner of inscut 99.5 1.8E-12 6.3E-17 121.6 18.3 272 116-409 48-371 (411)
62 4abn_A Tetratricopeptide repea 99.4 5E-12 1.7E-16 120.8 19.9 214 188-407 85-318 (474)
63 3sf4_A G-protein-signaling mod 99.4 6.5E-12 2.2E-16 117.4 19.7 275 113-409 6-335 (406)
64 3nf1_A KLC 1, kinesin light ch 99.4 7.5E-12 2.6E-16 112.4 18.3 239 168-409 26-306 (311)
65 3nf1_A KLC 1, kinesin light ch 99.4 2.2E-12 7.4E-17 116.0 14.6 249 113-375 24-307 (311)
66 3ro2_A PINS homolog, G-protein 99.4 1E-11 3.5E-16 112.6 18.7 235 208-442 45-331 (338)
67 3ulq_A Response regulator aspa 99.4 3.9E-11 1.3E-15 111.5 22.3 230 175-409 109-367 (383)
68 2ond_A Cleavage stimulation fa 99.4 6.4E-10 2.2E-14 99.9 28.7 218 97-375 33-270 (308)
69 3as5_A MAMA; tetratricopeptide 99.3 2.1E-10 7.3E-15 94.1 21.0 164 207-374 9-172 (186)
70 3q15_A PSP28, response regulat 99.3 1.2E-10 4E-15 108.1 21.1 229 175-409 107-364 (378)
71 4abn_A Tetratricopeptide repea 99.3 1.3E-10 4.3E-15 111.1 20.9 196 222-424 84-300 (474)
72 3e4b_A ALGK; tetratricopeptide 99.3 1.8E-10 6.1E-15 109.3 21.5 191 206-412 176-389 (452)
73 3as5_A MAMA; tetratricopeptide 99.3 3.1E-10 1.1E-14 93.1 20.2 165 241-409 8-172 (186)
74 4gyw_A UDP-N-acetylglucosamine 99.3 1.8E-10 6.2E-15 114.6 20.8 166 205-374 8-173 (723)
75 3e4b_A ALGK; tetratricopeptide 99.3 1.1E-09 3.7E-14 103.9 25.1 305 86-413 9-354 (452)
76 1hz4_A MALT regulatory protein 99.3 3.8E-09 1.3E-13 97.6 27.8 274 85-375 19-322 (373)
77 1hz4_A MALT regulatory protein 99.3 3.4E-09 1.2E-13 97.9 27.3 271 119-409 17-321 (373)
78 3ulq_A Response regulator aspa 99.3 3.6E-10 1.2E-14 105.0 20.5 235 122-375 109-368 (383)
79 4gyw_A UDP-N-acetylglucosamine 99.3 4.6E-10 1.6E-14 111.8 21.3 165 240-409 8-173 (723)
80 3edt_B KLC 2, kinesin light ch 99.3 8.9E-11 3E-15 103.6 14.5 236 126-375 11-281 (283)
81 3edt_B KLC 2, kinesin light ch 99.2 1.2E-10 4.1E-15 102.8 14.9 226 181-409 13-280 (283)
82 4i17_A Hypothetical protein; T 99.2 1.2E-09 4.1E-14 93.3 19.9 206 204-423 5-220 (228)
83 3q15_A PSP28, response regulat 99.2 5.5E-09 1.9E-13 96.7 24.5 222 147-374 114-364 (378)
84 4e6h_A MRNA 3'-END-processing 99.2 7.9E-08 2.7E-12 94.7 32.5 377 61-447 49-574 (679)
85 4i17_A Hypothetical protein; T 99.2 6.7E-09 2.3E-13 88.7 22.1 196 167-376 5-210 (228)
86 4e6h_A MRNA 3'-END-processing 99.1 1.9E-07 6.6E-12 91.9 32.7 360 61-426 119-584 (679)
87 1qqe_A Vesicular transport pro 99.1 3.7E-09 1.3E-13 94.1 17.5 200 213-416 44-273 (292)
88 2fo7_A Synthetic consensus TPR 99.1 1.3E-08 4.3E-13 78.4 17.7 126 280-408 5-130 (136)
89 3mv2_B Coatomer subunit epsilo 99.1 5.2E-08 1.8E-12 85.4 23.2 185 225-418 85-288 (310)
90 2fo7_A Synthetic consensus TPR 99.1 1.7E-08 5.9E-13 77.6 18.2 128 244-374 4-131 (136)
91 3qky_A Outer membrane assembly 99.0 2.3E-08 7.9E-13 87.3 18.4 168 205-375 14-224 (261)
92 1qqe_A Vesicular transport pro 99.0 2.3E-08 7.7E-13 89.0 18.4 166 207-372 78-266 (292)
93 3urz_A Uncharacterized protein 99.0 3.3E-08 1.1E-12 83.0 18.4 135 281-421 59-195 (208)
94 3mv2_B Coatomer subunit epsilo 99.0 1.3E-07 4.6E-12 82.8 21.0 221 209-448 48-287 (310)
95 2pzi_A Probable serine/threoni 98.9 2.2E-08 7.7E-13 99.9 17.7 173 217-396 402-583 (681)
96 3dra_A Protein farnesyltransfe 98.9 8.6E-07 2.9E-11 78.4 25.6 229 175-409 38-286 (306)
97 3urz_A Uncharacterized protein 98.9 6.3E-08 2.1E-12 81.3 17.4 166 211-383 9-192 (208)
98 3rjv_A Putative SEL1 repeat pr 98.9 2.5E-07 8.5E-12 77.9 20.7 176 189-376 4-198 (212)
99 3rjv_A Putative SEL1 repeat pr 98.9 2.2E-07 7.7E-12 78.1 20.2 179 223-413 3-200 (212)
100 2pzi_A Probable serine/threoni 98.9 2E-08 7E-13 100.2 15.3 174 180-361 402-583 (681)
101 3qky_A Outer membrane assembly 98.9 1.2E-07 4.2E-12 82.6 18.5 171 168-343 14-227 (261)
102 2r5s_A Uncharacterized protein 98.9 2.5E-08 8.5E-13 81.3 12.7 159 209-372 9-170 (176)
103 2vsy_A XCC0866; transferase, g 98.9 9.2E-08 3.2E-12 93.6 18.9 151 188-342 6-159 (568)
104 4ga2_A E3 SUMO-protein ligase 98.9 1.4E-08 4.7E-13 80.4 10.5 138 217-359 8-147 (150)
105 2yhc_A BAMD, UPF0169 lipoprote 98.9 3.7E-07 1.3E-11 77.6 20.2 184 205-410 3-213 (225)
106 3qou_A Protein YBBN; thioredox 98.9 5.6E-08 1.9E-12 86.1 15.4 165 204-372 115-281 (287)
107 2yhc_A BAMD, UPF0169 lipoprote 98.9 4.8E-07 1.6E-11 76.9 20.6 187 168-376 3-214 (225)
108 3qou_A Protein YBBN; thioredox 98.9 1.7E-07 5.7E-12 83.0 18.3 167 77-268 114-282 (287)
109 2r5s_A Uncharacterized protein 98.9 4.5E-08 1.6E-12 79.7 13.5 162 243-408 8-171 (176)
110 2vsy_A XCC0866; transferase, g 98.8 1.9E-07 6.4E-12 91.4 19.7 152 220-375 3-157 (568)
111 2uy1_A Cleavage stimulation fa 98.8 1.3E-05 4.6E-10 76.3 31.9 330 59-408 28-411 (493)
112 4ga2_A E3 SUMO-protein ligase 98.8 3.7E-08 1.3E-12 77.9 10.7 142 250-395 6-148 (150)
113 3u3w_A Transcriptional activat 98.8 1.4E-06 4.7E-11 77.4 21.8 163 211-373 80-264 (293)
114 3u3w_A Transcriptional activat 98.7 5.3E-06 1.8E-10 73.5 23.6 164 246-409 80-265 (293)
115 1hh8_A P67PHOX, NCF-2, neutrop 98.7 8.7E-07 3E-11 74.3 17.4 133 242-381 7-154 (213)
116 3dra_A Protein farnesyltransfe 98.7 1.7E-05 5.8E-10 70.1 26.0 226 88-339 40-286 (306)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.9E-06 6.6E-11 72.2 19.0 132 207-343 7-153 (213)
118 2ifu_A Gamma-SNAP; membrane fu 98.7 6.7E-07 2.3E-11 80.0 16.5 186 213-403 43-254 (307)
119 2ifu_A Gamma-SNAP; membrane fu 98.7 6.4E-07 2.2E-11 80.1 16.3 195 188-408 8-222 (307)
120 3q7a_A Farnesyltransferase alp 98.7 1.2E-05 4E-10 72.0 23.9 229 176-410 60-331 (349)
121 2qfc_A PLCR protein; TPR, HTH, 98.7 6.1E-06 2.1E-10 73.1 21.8 165 244-408 78-264 (293)
122 2qfc_A PLCR protein; TPR, HTH, 98.6 2.8E-06 9.5E-11 75.4 19.2 169 206-374 75-265 (293)
123 1a17_A Serine/threonine protei 98.6 1.9E-06 6.5E-11 68.8 16.4 126 279-407 16-143 (166)
124 4gco_A Protein STI-1; structur 98.6 1.1E-06 3.7E-11 67.0 13.6 94 313-408 15-108 (126)
125 1a17_A Serine/threonine protei 98.6 2.8E-06 9.6E-11 67.8 16.8 128 243-373 15-144 (166)
126 1na0_A Designed protein CTPR3; 98.6 2.9E-06 9.9E-11 63.9 15.3 93 280-374 13-105 (125)
127 4f3v_A ESX-1 secretion system 98.6 2.4E-06 8.4E-11 73.8 16.3 198 218-423 18-248 (282)
128 1na0_A Designed protein CTPR3; 98.6 3.3E-06 1.1E-10 63.5 15.6 96 243-340 11-106 (125)
129 3gw4_A Uncharacterized protein 98.6 1E-06 3.4E-11 73.2 13.1 156 217-373 3-174 (203)
130 3gyz_A Chaperone protein IPGC; 98.5 1.1E-06 3.9E-11 69.1 12.3 94 313-408 38-131 (151)
131 2uy1_A Cleavage stimulation fa 98.5 0.00027 9.3E-09 67.3 31.1 331 94-445 28-415 (493)
132 3gw4_A Uncharacterized protein 98.5 1.2E-06 4E-11 72.8 13.0 157 252-409 3-175 (203)
133 4gco_A Protein STI-1; structur 98.5 4.8E-06 1.7E-10 63.3 15.2 93 209-303 16-108 (126)
134 3gyz_A Chaperone protein IPGC; 98.5 4.2E-06 1.4E-10 65.8 14.8 99 276-376 36-134 (151)
135 2vyi_A SGTA protein; chaperone 98.5 4.3E-06 1.5E-10 63.5 14.6 92 281-374 17-108 (131)
136 2lni_A Stress-induced-phosphop 98.5 3.8E-06 1.3E-10 64.1 14.1 95 278-374 18-112 (133)
137 1p5q_A FKBP52, FK506-binding p 98.5 3.6E-06 1.2E-10 76.3 15.9 157 220-400 127-283 (336)
138 2vyi_A SGTA protein; chaperone 98.5 5.2E-06 1.8E-10 63.0 14.7 96 207-304 13-108 (131)
139 2lni_A Stress-induced-phosphop 98.5 4.6E-06 1.6E-10 63.7 14.0 97 206-304 16-112 (133)
140 2e2e_A Formate-dependent nitri 98.5 1.6E-06 5.4E-11 70.4 11.9 120 253-375 22-144 (177)
141 2c2l_A CHIP, carboxy terminus 98.5 2.5E-06 8.4E-11 75.2 13.5 98 205-304 3-100 (281)
142 3dss_A Geranylgeranyl transfer 98.5 0.00012 4.1E-09 65.1 24.2 222 178-408 38-302 (331)
143 2c2l_A CHIP, carboxy terminus 98.5 1E-06 3.6E-11 77.6 10.9 195 168-375 3-199 (281)
144 1p5q_A FKBP52, FK506-binding p 98.5 5.6E-06 1.9E-10 74.9 16.0 145 205-372 146-291 (336)
145 2e2e_A Formate-dependent nitri 98.4 4.9E-06 1.7E-10 67.4 13.9 120 218-340 22-144 (177)
146 2vgx_A Chaperone SYCD; alterna 98.4 1.6E-06 5.3E-11 68.2 10.3 94 313-408 23-116 (148)
147 3upv_A Heat shock protein STI1 98.4 4.9E-06 1.7E-10 63.2 12.7 94 313-408 6-99 (126)
148 3q7a_A Farnesyltransferase alp 98.4 0.00023 7.9E-09 63.7 24.9 176 90-291 64-257 (349)
149 2fbn_A 70 kDa peptidylprolyl i 98.4 7.9E-07 2.7E-11 73.8 8.5 121 242-364 39-174 (198)
150 4f3v_A ESX-1 secretion system 98.4 2.5E-05 8.5E-10 67.5 17.3 185 182-376 19-238 (282)
151 2vgx_A Chaperone SYCD; alterna 98.4 2.3E-06 7.9E-11 67.2 9.9 98 276-375 21-118 (148)
152 1elw_A TPR1-domain of HOP; HOP 98.4 1.5E-05 5.3E-10 59.1 14.2 94 313-408 6-99 (118)
153 4gcn_A Protein STI-1; structur 98.4 6.3E-06 2.2E-10 62.8 11.9 104 313-419 10-119 (127)
154 2xcb_A PCRH, regulatory protei 98.4 4.2E-06 1.4E-10 65.1 11.1 94 313-408 20-113 (142)
155 3upv_A Heat shock protein STI1 98.3 1.8E-05 6.1E-10 59.9 13.9 95 208-304 6-100 (126)
156 1elw_A TPR1-domain of HOP; HOP 98.3 4.4E-05 1.5E-09 56.5 15.8 18 319-336 80-97 (118)
157 3sz7_A HSC70 cochaperone (SGT) 98.3 6.6E-06 2.2E-10 65.8 11.6 98 276-375 11-108 (164)
158 4b4t_Q 26S proteasome regulato 98.3 7.2E-05 2.5E-09 70.1 20.1 165 209-373 58-243 (434)
159 4gcn_A Protein STI-1; structur 98.3 1.4E-05 4.9E-10 60.7 12.4 97 207-304 9-111 (127)
160 3q49_B STIP1 homology and U bo 98.3 2.7E-05 9.3E-10 59.8 14.3 96 311-408 9-104 (137)
161 2fbn_A 70 kDa peptidylprolyl i 98.3 2E-05 6.8E-10 65.2 14.3 156 250-408 13-184 (198)
162 1hxi_A PEX5, peroxisome target 98.2 1.4E-05 4.8E-10 60.2 11.5 89 318-408 24-112 (121)
163 2kck_A TPR repeat; tetratricop 98.2 1.7E-05 5.9E-10 58.2 11.9 96 207-304 7-105 (112)
164 2dba_A Smooth muscle cell asso 98.2 5.5E-05 1.9E-09 58.7 15.4 94 278-374 30-127 (148)
165 3sz7_A HSC70 cochaperone (SGT) 98.2 3.8E-05 1.3E-09 61.3 14.5 99 240-340 10-108 (164)
166 2xcb_A PCRH, regulatory protei 98.2 2.3E-05 8E-10 60.8 12.9 96 278-375 20-115 (142)
167 3q49_B STIP1 homology and U bo 98.2 4.5E-05 1.5E-09 58.5 14.3 99 275-375 8-106 (137)
168 2kck_A TPR repeat; tetratricop 98.2 1.8E-05 6.3E-10 58.0 11.5 93 314-408 9-104 (112)
169 1elr_A TPR2A-domain of HOP; HO 98.2 2.1E-05 7.1E-10 59.6 12.1 96 313-409 6-107 (131)
170 1elr_A TPR2A-domain of HOP; HO 98.2 1.7E-05 5.7E-10 60.1 11.3 97 207-304 5-107 (131)
171 2dba_A Smooth muscle cell asso 98.2 9.8E-05 3.4E-09 57.3 15.6 97 205-304 27-127 (148)
172 3dss_A Geranylgeranyl transfer 98.1 0.0013 4.3E-08 58.6 23.4 193 217-416 40-271 (331)
173 3ro3_A PINS homolog, G-protein 98.1 1.9E-05 6.5E-10 62.3 10.4 96 313-408 51-156 (164)
174 1hxi_A PEX5, peroxisome target 98.1 4.4E-05 1.5E-09 57.4 11.5 94 279-374 20-113 (121)
175 3ro3_A PINS homolog, G-protein 98.1 3.9E-05 1.3E-09 60.5 11.6 97 278-374 51-157 (164)
176 3rkv_A Putative peptidylprolyl 98.1 1.1E-05 3.7E-10 64.4 8.1 61 347-408 64-124 (162)
177 4b4t_Q 26S proteasome regulato 98.1 0.00036 1.2E-08 65.3 19.6 192 147-340 17-245 (434)
178 1wao_1 Serine/threonine protei 98.0 2.3E-05 8E-10 74.5 10.6 117 286-405 16-134 (477)
179 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 0.00011 3.7E-09 69.6 15.1 96 311-408 317-413 (457)
180 3k9i_A BH0479 protein; putativ 98.0 1.1E-05 3.6E-10 60.4 6.4 86 289-375 3-90 (117)
181 2xev_A YBGF; tetratricopeptide 98.0 0.00053 1.8E-08 51.7 15.4 22 317-338 82-103 (129)
182 2xev_A YBGF; tetratricopeptide 98.0 0.0005 1.7E-08 51.8 15.2 92 282-375 8-105 (129)
183 3k9i_A BH0479 protein; putativ 97.9 2.1E-05 7.2E-10 58.7 6.9 83 325-408 4-88 (117)
184 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.00023 8E-09 67.2 15.6 108 313-423 270-391 (457)
185 2if4_A ATFKBP42; FKBP-like, al 97.9 2.9E-05 9.9E-10 70.3 8.6 148 240-408 178-326 (338)
186 1wao_1 Serine/threonine protei 97.9 4.1E-05 1.4E-09 72.8 9.9 115 253-370 18-134 (477)
187 1ihg_A Cyclophilin 40; ppiase 97.9 0.00015 5.3E-09 66.3 13.2 89 311-401 273-361 (370)
188 1dce_A Protein (RAB geranylger 97.9 0.0011 3.8E-08 64.2 19.5 181 178-364 37-244 (567)
189 3rkv_A Putative peptidylprolyl 97.9 0.00022 7.4E-09 56.6 12.1 97 207-304 12-125 (162)
190 1ihg_A Cyclophilin 40; ppiase 97.9 0.00024 8.1E-09 65.0 13.7 91 275-367 272-362 (370)
191 3n71_A Histone lysine methyltr 97.8 7.9E-05 2.7E-09 70.5 10.6 133 89-234 318-463 (490)
192 2hr2_A Hypothetical protein; a 97.8 0.00054 1.9E-08 53.4 12.3 61 313-374 59-130 (159)
193 1dce_A Protein (RAB geranylger 97.8 0.0018 6.1E-08 62.8 18.7 175 220-399 43-244 (567)
194 2hr2_A Hypothetical protein; a 97.7 0.00067 2.3E-08 52.9 12.3 111 314-424 14-150 (159)
195 1klx_A Cysteine rich protein B 97.7 0.0022 7.6E-08 49.2 14.9 110 256-376 10-127 (138)
196 2if4_A ATFKBP42; FKBP-like, al 97.7 0.00017 5.8E-09 65.2 9.6 152 276-449 179-334 (338)
197 3n71_A Histone lysine methyltr 97.7 0.00016 5.4E-09 68.5 9.6 98 170-269 352-463 (490)
198 1klx_A Cysteine rich protein B 97.6 0.0027 9.4E-08 48.6 14.9 110 291-411 10-127 (138)
199 2l6j_A TPR repeat-containing p 97.6 8.4E-05 2.9E-09 54.5 5.4 64 311-375 4-67 (111)
200 2kat_A Uncharacterized protein 97.5 0.00075 2.6E-08 49.8 9.4 78 295-374 4-81 (115)
201 1na3_A Designed protein CTPR2; 97.5 0.0016 5.4E-08 45.4 10.7 62 313-375 11-72 (91)
202 2l6j_A TPR repeat-containing p 97.4 0.00021 7.1E-09 52.3 5.5 63 277-340 5-67 (111)
203 1zu2_A Mitochondrial import re 97.4 0.00023 8E-09 55.4 5.6 71 287-359 13-93 (158)
204 1na3_A Designed protein CTPR2; 97.4 0.0027 9.3E-08 44.1 10.8 77 278-356 11-87 (91)
205 2kat_A Uncharacterized protein 97.4 0.0027 9.1E-08 46.7 11.2 77 330-408 4-80 (115)
206 3ma5_A Tetratricopeptide repea 97.3 0.0013 4.5E-08 47.1 8.1 62 311-373 7-68 (100)
207 1zu2_A Mitochondrial import re 97.2 0.0012 3.9E-08 51.5 7.6 97 219-319 15-132 (158)
208 3ma5_A Tetratricopeptide repea 97.1 0.0026 8.8E-08 45.6 8.6 63 205-268 6-68 (100)
209 3ly7_A Transcriptional activat 96.8 0.03 1E-06 50.2 13.7 73 344-420 275-347 (372)
210 2kc7_A BFR218_protein; tetratr 96.6 0.0069 2.3E-07 42.9 7.3 55 320-375 9-64 (99)
211 3mkq_A Coatomer beta'-subunit; 96.6 0.045 1.5E-06 55.6 15.8 154 215-407 608-762 (814)
212 3qww_A SET and MYND domain-con 96.6 0.0062 2.1E-07 56.6 8.3 95 92-199 310-410 (433)
213 3ly7_A Transcriptional activat 96.5 0.1 3.5E-06 46.7 15.2 67 273-341 274-340 (372)
214 3qwp_A SET and MYND domain-con 96.5 0.0098 3.4E-07 55.3 9.0 101 86-199 293-399 (429)
215 3mkq_A Coatomer beta'-subunit; 96.4 0.069 2.4E-06 54.2 16.0 129 210-371 633-761 (814)
216 3qww_A SET and MYND domain-con 96.4 0.0051 1.7E-07 57.2 6.7 85 147-233 311-409 (433)
217 1wy6_A Hypothetical protein ST 96.4 0.18 6.3E-06 37.4 14.2 64 349-413 94-157 (172)
218 3qwp_A SET and MYND domain-con 96.4 0.034 1.2E-06 51.7 12.2 91 283-373 294-398 (429)
219 2kc7_A BFR218_protein; tetratr 96.3 0.015 5E-07 41.1 7.2 57 213-270 7-64 (99)
220 1pc2_A Mitochondria fission pr 96.2 0.021 7.2E-07 43.9 8.0 63 345-408 31-98 (152)
221 3u64_A Protein TP_0956; tetrat 96.1 0.29 9.9E-06 42.0 15.3 95 223-317 180-283 (301)
222 3mkq_B Coatomer subunit alpha; 96.1 0.2 6.9E-06 39.5 13.3 99 251-370 15-113 (177)
223 3bee_A Putative YFRE protein; 96.0 0.13 4.5E-06 35.9 10.9 65 310-375 5-72 (93)
224 3bee_A Putative YFRE protein; 95.8 0.14 4.9E-06 35.7 10.4 46 223-269 26-71 (93)
225 2v5f_A Prolyl 4-hydroxylase su 95.5 0.078 2.7E-06 38.0 8.2 61 348-408 7-73 (104)
226 1pc2_A Mitochondria fission pr 95.0 0.35 1.2E-05 37.1 10.8 81 293-375 15-100 (152)
227 4h7y_A Dual specificity protei 95.0 0.35 1.2E-05 36.8 10.2 54 290-344 74-127 (161)
228 3u64_A Protein TP_0956; tetrat 94.9 0.27 9.4E-06 42.2 11.0 85 292-378 179-272 (301)
229 1wy6_A Hypothetical protein ST 94.9 0.85 2.9E-05 33.9 13.4 140 90-272 17-156 (172)
230 2v5f_A Prolyl 4-hydroxylase su 94.8 0.37 1.2E-05 34.3 10.2 19 247-265 11-29 (104)
231 3mkq_B Coatomer subunit alpha; 94.8 1.2 3.9E-05 35.2 16.1 100 215-335 14-113 (177)
232 1nzn_A CGI-135 protein, fissio 94.5 0.17 5.8E-06 37.3 7.5 82 326-409 16-102 (126)
233 4h7y_A Dual specificity protei 93.5 0.84 2.9E-05 34.7 9.6 112 205-319 12-136 (161)
234 3lvg_A Clathrin heavy chain 1; 93.5 0.0001 3.6E-09 67.3 -13.5 235 79-365 82-323 (624)
235 2ff4_A Probable regulatory pro 92.5 0.63 2.2E-05 42.5 9.6 66 352-418 177-247 (388)
236 3lvg_A Clathrin heavy chain 1; 92.2 0.00049 1.7E-08 63.0 -11.1 208 117-366 55-282 (624)
237 4b4t_P 26S proteasome regulato 92.0 7.7 0.00026 36.0 17.4 56 282-337 143-203 (445)
238 4gns_B Protein CSD3, chitin bi 91.8 1.2 4E-05 44.2 11.1 51 356-407 347-397 (754)
239 1v54_E Cytochrome C oxidase po 91.7 0.71 2.4E-05 32.2 6.6 63 60-124 25-87 (109)
240 1nzn_A CGI-135 protein, fissio 91.6 1.5 5.1E-05 32.3 8.8 67 309-375 33-103 (126)
241 4fhn_B Nucleoporin NUP120; pro 91.5 16 0.00054 38.6 21.0 164 83-257 815-987 (1139)
242 2ff4_A Probable regulatory pro 91.1 1.2 4.2E-05 40.5 9.9 68 315-383 175-247 (388)
243 4fhn_B Nucleoporin NUP120; pro 89.6 9.9 0.00034 40.2 16.5 190 210-407 816-1047(1139)
244 4gns_B Protein CSD3, chitin bi 89.2 2.7 9.4E-05 41.6 11.0 52 320-372 346-397 (754)
245 2y69_E Cytochrome C oxidase su 88.2 1.8 6.1E-05 32.0 6.6 62 60-123 68-129 (152)
246 3o48_A Mitochondria fission 1 87.8 6.7 0.00023 29.0 10.4 73 342-416 36-111 (134)
247 4b4t_P 26S proteasome regulato 87.4 18 0.00062 33.5 19.4 240 167-408 54-322 (445)
248 2y69_E Cytochrome C oxidase su 87.4 7.2 0.00025 28.9 10.8 46 364-409 71-116 (152)
249 1v54_E Cytochrome C oxidase po 87.2 5.9 0.0002 27.7 10.8 46 364-409 28-73 (109)
250 3ffl_A Anaphase-promoting comp 84.4 2.3 7.7E-05 33.0 5.9 131 74-235 12-151 (167)
251 1y8m_A FIS1; mitochondria, unk 83.1 13 0.00043 28.0 11.5 65 344-408 37-104 (144)
252 4b4t_R RPN7, 26S proteasome re 81.7 17 0.00058 33.4 12.0 98 207-304 132-236 (429)
253 3txn_A 26S proteasome regulato 79.1 37 0.0013 30.7 19.1 168 169-339 19-209 (394)
254 1wdy_A 2-5A-dependent ribonucl 78.7 6.8 0.00023 33.2 8.0 176 175-370 42-240 (285)
255 1zbp_A Hypothetical protein VP 78.3 6.9 0.00024 33.1 7.3 114 285-409 6-128 (273)
256 2p58_C Putative type III secre 78.2 12 0.00041 26.1 7.0 78 326-411 22-99 (116)
257 4b4t_R RPN7, 26S proteasome re 77.1 17 0.00057 33.5 10.4 99 277-375 132-237 (429)
258 2wpv_A GET4, UPF0363 protein Y 76.9 37 0.0013 29.5 17.3 128 156-303 79-215 (312)
259 3esl_A Checkpoint serine/threo 75.8 29 0.00098 27.9 9.8 56 325-380 93-149 (202)
260 2wpv_A GET4, UPF0363 protein Y 73.7 45 0.0015 29.0 20.1 112 209-335 36-158 (312)
261 3o48_A Mitochondria fission 1 73.1 26 0.00088 25.9 9.8 67 203-269 37-106 (134)
262 2uwj_G Type III export protein 72.3 10 0.00035 26.3 5.5 78 326-411 21-98 (115)
263 3eiq_C Programmed cell death p 71.5 44 0.0015 29.7 11.1 23 350-372 221-243 (358)
264 2uwj_G Type III export protein 71.2 23 0.00079 24.6 8.3 89 182-279 17-105 (115)
265 3esl_A Checkpoint serine/threo 70.8 33 0.0011 27.5 9.1 67 348-415 82-149 (202)
266 2p58_C Putative type III secre 70.6 24 0.00083 24.6 9.0 89 182-279 18-106 (116)
267 4ady_A RPN2, 26S proteasome re 70.1 1E+02 0.0035 31.6 25.4 152 216-373 500-656 (963)
268 3txn_A 26S proteasome regulato 69.9 64 0.0022 29.2 26.4 236 117-372 20-281 (394)
269 1zbp_A Hypothetical protein VP 69.6 17 0.0006 30.6 7.6 114 249-375 5-129 (273)
270 3ffl_A Anaphase-promoting comp 69.1 38 0.0013 26.2 10.5 117 279-408 23-149 (167)
271 3kea_A K1L; tropism, ANK repea 68.8 26 0.00089 29.8 9.2 113 175-301 65-183 (285)
272 1k1a_A B-cell lymphoma 3-encod 67.9 12 0.00042 30.7 6.7 23 214-236 14-36 (241)
273 1qsa_A Protein (soluble lytic 65.7 1E+02 0.0035 29.9 26.5 176 188-370 231-437 (618)
274 3lpz_A GET4 (YOR164C homolog); 65.6 70 0.0024 28.1 21.3 166 209-408 38-214 (336)
275 4ady_A RPN2, 26S proteasome re 65.4 1.3E+02 0.0043 30.9 24.9 119 286-409 500-622 (963)
276 1y8m_A FIS1; mitochondria, unk 65.1 41 0.0014 25.2 11.6 67 203-269 36-105 (144)
277 3eu9_A Huntingtin-interacting 62.3 7.7 0.00026 31.8 4.3 17 390-406 216-232 (240)
278 2wvi_A Mitotic checkpoint seri 59.8 37 0.0013 26.2 7.3 50 330-379 79-129 (164)
279 1wdy_A 2-5A-dependent ribonucl 59.4 20 0.00067 30.2 6.6 214 174-415 7-247 (285)
280 3t8k_A Uncharacterized protein 58.5 56 0.0019 25.6 8.7 53 188-240 52-108 (186)
281 3eiq_C Programmed cell death p 58.2 1E+02 0.0034 27.4 13.6 77 280-357 221-299 (358)
282 2nsz_A Programmed cell death p 58.0 36 0.0012 25.0 6.8 63 209-272 10-74 (129)
283 4g8k_A 2-5A-dependent ribonucl 57.8 61 0.0021 28.1 9.7 278 120-439 26-322 (337)
284 3lpz_A GET4 (YOR164C homolog); 57.7 99 0.0034 27.1 22.1 129 155-303 80-214 (336)
285 4a1g_A Mitotic checkpoint seri 56.8 27 0.00094 26.5 6.0 50 330-379 84-134 (152)
286 4a1g_A Mitotic checkpoint seri 55.9 65 0.0022 24.5 9.1 50 295-344 84-134 (152)
287 2d2s_A Exocyst complex compone 55.0 64 0.0022 26.7 8.5 89 212-303 24-118 (235)
288 3aji_A 26S proteasome non-ATPa 54.9 38 0.0013 27.3 7.4 19 213-231 10-28 (231)
289 2ion_A PDCD4, programmed cell 54.1 70 0.0024 24.3 8.0 24 280-303 13-36 (152)
290 2d2s_A Exocyst complex compone 54.1 67 0.0023 26.5 8.5 90 282-374 24-119 (235)
291 3ltm_A Alpha-REP4; protein eng 53.6 82 0.0028 24.9 17.0 17 240-256 94-110 (211)
292 2nsz_A Programmed cell death p 52.1 67 0.0023 23.5 9.4 22 316-337 12-33 (129)
293 3kea_A K1L; tropism, ANK repea 51.9 27 0.00091 29.8 6.1 182 177-382 36-224 (285)
294 1k1a_A B-cell lymphoma 3-encod 49.8 59 0.002 26.3 7.9 84 176-266 13-101 (241)
295 2ion_A PDCD4, programmed cell 49.3 32 0.0011 26.2 5.4 63 209-272 12-76 (152)
296 3jxi_A Vanilloid receptor-rela 48.3 13 0.00043 31.1 3.4 21 216-236 12-32 (260)
297 3eu9_A Huntingtin-interacting 47.0 36 0.0012 27.5 6.0 11 213-223 46-56 (240)
298 2xig_A Ferric uptake regulatio 45.2 95 0.0033 23.3 7.6 60 337-397 18-77 (150)
299 2zu6_B Programmed cell death p 44.8 1.5E+02 0.0051 25.6 9.6 72 348-420 168-241 (307)
300 4b4t_S RPN3, 26S proteasome re 44.8 50 0.0017 31.0 6.8 65 206-270 231-299 (523)
301 2wvi_A Mitotic checkpoint seri 44.3 1.1E+02 0.0037 23.6 9.4 50 295-344 79-129 (164)
302 3l6a_A Eukaryotic translation 43.6 1.4E+02 0.0047 26.6 9.4 24 172-197 15-38 (364)
303 3e3v_A Regulatory protein RECX 43.4 1.2E+02 0.0039 23.7 8.1 114 291-407 48-163 (177)
304 3t8k_A Uncharacterized protein 43.4 81 0.0028 24.6 7.3 29 212-240 41-69 (186)
305 4aez_C MAD3, mitotic spindle c 42.8 44 0.0015 27.3 5.5 51 329-379 132-183 (223)
306 3bu8_A Telomeric repeat-bindin 42.5 1.3E+02 0.0046 24.3 12.0 49 327-375 88-143 (235)
307 1qsa_A Protein (soluble lytic 42.1 2.5E+02 0.0084 27.2 27.0 150 256-409 229-409 (618)
308 2fu4_A Ferric uptake regulatio 41.5 72 0.0024 20.8 6.6 64 68-133 5-69 (83)
309 2zu6_B Programmed cell death p 40.3 1.8E+02 0.0062 25.1 11.2 70 313-383 168-239 (307)
310 4aez_C MAD3, mitotic spindle c 39.2 73 0.0025 26.0 6.2 51 294-344 132-183 (223)
311 3jxi_A Vanilloid receptor-rela 38.1 19 0.00065 30.0 2.9 52 179-232 12-72 (260)
312 3hra_A Ankyrin repeat family p 37.7 60 0.0021 25.3 5.8 6 288-293 81-86 (201)
313 2fe3_A Peroxide operon regulat 37.5 94 0.0032 23.2 6.4 59 337-396 13-71 (145)
314 3hra_A Ankyrin repeat family p 37.3 48 0.0016 25.9 5.1 154 251-416 12-173 (201)
315 4fke_A Aminopeptidase N; zinc 37.2 3.5E+02 0.012 27.6 16.1 170 280-453 690-867 (909)
316 3e3v_A Regulatory protein RECX 36.6 1.5E+02 0.0051 23.1 9.9 52 256-308 48-99 (177)
317 3ltj_A Alpharep-4; protein eng 36.3 1.5E+02 0.0052 23.0 18.0 17 240-256 89-105 (201)
318 2b7e_A PRE-mRNA processing pro 35.9 39 0.0013 20.8 3.1 29 258-286 3-31 (59)
319 4gq2_M Nucleoporin NUP120; bet 35.3 1.8E+02 0.0061 29.9 10.0 88 317-410 816-926 (950)
320 2rfa_A Transient receptor pote 34.3 1.8E+02 0.006 23.2 8.6 18 123-140 7-24 (232)
321 2fe3_A Peroxide operon regulat 34.1 1.4E+02 0.0049 22.1 8.7 69 64-134 6-74 (145)
322 2r9g_A AAA ATPase, central reg 34.0 1.8E+02 0.0061 23.2 10.1 33 255-288 28-60 (204)
323 2rfa_A Transient receptor pote 33.8 1.7E+02 0.0057 23.3 8.1 23 320-342 160-182 (232)
324 1mzb_A Ferric uptake regulatio 33.3 99 0.0034 22.7 5.9 35 361-395 33-67 (136)
325 3b7b_A Euchromatic histone-lys 33.0 38 0.0013 27.5 3.9 16 393-408 219-234 (237)
326 2w57_A Ferric uptake regulatio 33.0 1.3E+02 0.0045 22.5 6.6 65 68-134 5-70 (150)
327 4ets_A Ferric uptake regulatio 31.7 1.1E+02 0.0038 23.4 6.0 57 340-397 27-85 (162)
328 3eyy_A Putative iron uptake re 31.1 1.6E+02 0.0056 21.9 7.5 65 67-134 6-70 (145)
329 1ug3_A EIF4GI, eukaryotic prot 31.1 70 0.0024 28.2 5.4 24 172-197 14-37 (339)
330 2xig_A Ferric uptake regulatio 30.8 1.7E+02 0.0058 21.9 7.6 62 300-362 16-77 (150)
331 3aji_A 26S proteasome non-ATPa 30.8 1.6E+02 0.0055 23.4 7.5 87 176-274 10-99 (231)
332 2o03_A Probable zinc uptake re 30.4 94 0.0032 22.7 5.3 44 212-255 16-59 (131)
333 3bge_A Predicted ATPase; struc 30.3 2.1E+02 0.0071 22.8 8.4 32 254-285 20-51 (201)
334 3ljn_A Hypothetical protein; a 30.1 68 0.0023 28.2 5.4 221 120-371 21-266 (364)
335 1mzb_A Ferric uptake regulatio 29.9 1.6E+02 0.0056 21.5 7.0 58 197-255 9-67 (136)
336 4ets_A Ferric uptake regulatio 29.7 1.5E+02 0.0051 22.7 6.5 59 197-256 24-84 (162)
337 1sxj_D Activator 1 41 kDa subu 29.7 2.7E+02 0.0094 24.0 11.7 44 172-219 268-311 (353)
338 2w57_A Ferric uptake regulatio 29.6 1.2E+02 0.0039 22.9 5.8 35 362-396 33-67 (150)
339 4gq2_M Nucleoporin NUP120; bet 28.9 4.9E+02 0.017 26.7 14.0 53 85-143 815-867 (950)
340 3mwm_A ZUR, putative metal upt 28.0 85 0.0029 23.3 4.7 45 211-255 18-62 (139)
341 3eyy_A Putative iron uptake re 27.8 97 0.0033 23.1 5.0 33 363-395 34-66 (145)
342 2r9g_A AAA ATPase, central reg 27.7 2.3E+02 0.008 22.6 9.5 63 209-272 14-84 (204)
343 2fu4_A Ferric uptake regulatio 27.5 1.3E+02 0.0044 19.5 6.5 29 224-252 35-63 (83)
344 3ltm_A Alpha-REP4; protein eng 27.3 2.2E+02 0.0076 22.2 21.8 157 59-256 16-172 (211)
345 1wgl_A TOLL-interacting protei 26.4 1.2E+02 0.004 18.7 4.5 22 394-415 36-57 (59)
346 3bge_A Predicted ATPase; struc 26.0 2.5E+02 0.0085 22.4 8.3 46 210-255 8-56 (201)
347 2keb_A DNA polymerase subunit 25.8 81 0.0028 21.7 3.6 58 364-423 27-89 (101)
348 2o03_A Probable zinc uptake re 25.3 1.8E+02 0.0063 21.0 6.1 48 85-133 15-62 (131)
349 2ijq_A Hypothetical protein; s 25.3 2.3E+02 0.0078 21.7 8.1 51 219-269 45-103 (161)
350 1ug3_A EIF4GI, eukaryotic prot 25.2 3.4E+02 0.012 23.7 14.9 27 118-144 13-39 (339)
351 3ygs_P Procaspase 9; apoptosis 25.2 1.5E+02 0.0051 20.2 5.2 13 328-340 54-66 (97)
352 3r88_A Anthranilate phosphorib 24.8 2.2E+02 0.0076 25.4 7.5 68 168-236 22-89 (377)
353 2etb_A Transient receptor pote 24.4 1.8E+02 0.006 23.7 6.7 23 179-203 9-31 (256)
354 3ltj_A Alpharep-4; protein eng 24.3 2.5E+02 0.0085 21.7 21.8 158 58-256 10-167 (201)
355 2yru_A Steroid receptor RNA ac 24.2 1.5E+02 0.005 21.4 5.1 17 252-268 72-88 (118)
356 2rg8_A Programmed cell death p 24.2 1.6E+02 0.0055 22.6 5.7 59 348-408 12-72 (165)
357 1oai_A Nuclear RNA export fact 24.0 94 0.0032 19.1 3.5 27 180-206 29-56 (59)
358 2f6m_A Suppressor protein STP2 23.8 1.3E+02 0.0046 18.9 4.1 27 350-376 6-32 (65)
359 3c1d_A Protein ORAA, regulator 23.6 2.4E+02 0.0083 21.3 11.5 50 292-343 46-95 (159)
360 2pnn_A Transient receptor pote 23.5 53 0.0018 27.4 3.2 14 391-404 240-253 (273)
361 1u9p_A PARC; unknown function; 23.5 1.9E+02 0.0066 20.8 5.4 73 61-133 27-108 (120)
362 3ctd_A Putative ATPase, AAA fa 23.2 2.9E+02 0.01 22.2 9.3 92 247-339 38-137 (213)
363 3mwm_A ZUR, putative metal upt 23.1 1.7E+02 0.0059 21.5 5.6 49 85-134 18-66 (139)
364 3pvs_A Replication-associated 22.8 4.4E+02 0.015 24.1 12.8 55 288-342 267-326 (447)
365 3f3f_C Nucleoporin NUP85; stru 22.7 3.3E+02 0.011 25.8 8.4 89 172-262 482-570 (570)
366 2etb_A Transient receptor pote 22.4 1E+02 0.0034 25.3 4.7 57 212-269 5-71 (256)
367 2pnn_A Transient receptor pote 22.2 88 0.003 26.0 4.3 61 169-232 11-80 (273)
368 3bqo_A Telomeric repeat-bindin 21.9 3.1E+02 0.01 21.9 8.0 97 170-267 24-143 (211)
369 1bpo_A Protein (clathrin); cla 21.5 4.9E+02 0.017 24.1 10.8 46 94-143 343-388 (494)
370 2dzn_A Probable 26S proteasome 21.4 2.1E+02 0.0072 22.6 6.5 16 389-404 179-194 (228)
371 2ijq_A Hypothetical protein; s 21.2 2.8E+02 0.0096 21.2 8.3 50 325-374 46-103 (161)
372 2qx5_A Nucleoporin NIC96; mRNA 20.6 6E+02 0.02 24.8 11.1 34 124-162 451-484 (661)
373 3pvs_A Replication-associated 20.1 5E+02 0.017 23.7 14.4 55 323-377 267-326 (447)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=9.3e-34 Score=270.63 Aligned_cols=205 Identities=15% Similarity=0.194 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHcCCCcCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------HH
Q 039177 189 ELLGFVQEMKKLGFCFGM-VDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQED---------YV 258 (453)
Q Consensus 189 ~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~---------~~ 258 (453)
.+..+.+.+.+.+..... ..++.+|++|++.|++++|+++|++|.+.|++||..||++||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344455555555544333 24666666677777777777777777666666677777776666665543 44
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039177 259 KAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMK 338 (453)
Q Consensus 259 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 338 (453)
.|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 039177 339 WKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQ 393 (453)
Q Consensus 339 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 393 (453)
+.|+.||..||++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+.
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 5555555555555555555555555555555555555555555555555555544
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.1e-33 Score=270.05 Aligned_cols=208 Identities=14% Similarity=0.203 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHHCCCccCh-HhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCC--------
Q 039177 151 GFAIEILNCMINDGFCVDG-KTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEK-------- 221 (453)
Q Consensus 151 ~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-------- 221 (453)
..+..+.+.+.+.+..+.+ ..++.+|.+|++.|++ ++|.++|++|.+.|+.||..+||+||.+|++.+.
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~--~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~ 84 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDV--LEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNP 84 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCH--HHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcc
Confidence 3456667778877776554 4688999999999999 9999999999999999999999999999998765
Q ss_pred -hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 039177 222 -VFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIA 300 (453)
Q Consensus 222 -~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 300 (453)
++.|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|+
T Consensus 85 ~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 85 GLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 039177 301 CMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKG 360 (453)
Q Consensus 301 ~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 360 (453)
+|.+.|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..+
T Consensus 165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999999999999998743
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.6e-31 Score=261.53 Aligned_cols=357 Identities=10% Similarity=0.020 Sum_probs=254.3
Q ss_pred CCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhh-cccC---------
Q 039177 76 CEPPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYK-IPKF--------- 145 (453)
Q Consensus 76 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~--------- 145 (453)
..|+..++..++.++.+.|++++|..+|+.+... +++..+++.++.+|.++|++++|+++|++ ++..
T Consensus 113 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 189 (597)
T 2xpi_A 113 ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKL 189 (597)
T ss_dssp HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------
T ss_pred hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccc
Confidence 4456666666666666666666666666665432 45566666666666666666666666662 3322
Q ss_pred ---------C-------------CCcHHHHHHHHHHHHHCC---------------------------------------
Q 039177 146 ---------R-------------INRVGFAIEILNCMINDG--------------------------------------- 164 (453)
Q Consensus 146 ---------~-------------~~~~~~a~~~~~~m~~~~--------------------------------------- 164 (453)
+ .|++++|+++|++|...+
T Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 269 (597)
T 2xpi_A 190 LMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAA 269 (597)
T ss_dssp -CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHH
T ss_pred cccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHH
Confidence 0 455566666665554422
Q ss_pred -------------------------------CccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHH
Q 039177 165 -------------------------------FCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVI 213 (453)
Q Consensus 165 -------------------------------~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 213 (453)
.+++..+++.++.++.+.|+. ++|.++|+++.+.+ +.+..+|+.++
T Consensus 270 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~-~~~~~~~~~l~ 346 (597)
T 2xpi_A 270 FLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRF--IDVLAITTKILEID-PYNLDVYPLHL 346 (597)
T ss_dssp HHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHC-TTCCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHcC-cccHHHHHHHH
Confidence 135666777777777777777 77777777777665 34667777777
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 039177 214 RSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVE 293 (453)
Q Consensus 214 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~ 293 (453)
.+|.+.|++++|.++++++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|+++
T Consensus 347 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 424 (597)
T 2xpi_A 347 ASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHD 424 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 88888888888888887777543 3367788888888888888888888888887643 245778888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039177 294 AGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEAL 373 (453)
Q Consensus 294 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 373 (453)
+|.++|+++.+.+. .+..+|+.++.+|.+.|++++|.++|+.+.+.... +..+|+.++..|.+.|++++|.++|+++.
T Consensus 425 ~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 502 (597)
T 2xpi_A 425 QAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNAL 502 (597)
T ss_dssp HHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 88888888887542 36778888888888888888888888888876544 77888888888888888888888888887
Q ss_pred HC----CCCCC--hhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHhchhcchh--hHHHHHHHHHHh
Q 039177 374 NK----GLCTQ--SSMFDETICGLCQRGLVRKALELLKQMADKDVSPGARVWEALLLSSVSKLD--FVNTSFIRLVDQ 443 (453)
Q Consensus 374 ~~----~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~~~--~~~~~~~~~~~~ 443 (453)
+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+ ..+..+|..+..+|...++ .+...+.+.++.
T Consensus 503 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 503 LLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 65 55666 5678888888888888888888888887543 3367777777777754444 444445555554
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.3e-30 Score=253.35 Aligned_cols=356 Identities=10% Similarity=-0.019 Sum_probs=283.3
Q ss_pred CChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC-----------
Q 039177 78 PPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFR----------- 146 (453)
Q Consensus 78 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----------- 146 (453)
++...|+.++..+.+.|++++|..+|+.+... .|+..++..++.+|.+.|++++|+.+|+++....
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHH
Confidence 57788999999999999999999999999865 5688899999999999999999999999984332
Q ss_pred ----CCcHHHHHHHHHHHHHC---------------CCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC-----
Q 039177 147 ----INRVGFAIEILNCMIND---------------GFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGF----- 202 (453)
Q Consensus 147 ----~~~~~~a~~~~~~m~~~---------------~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~----- 202 (453)
.|++++|+++|+++... +..++..+|+.++.+|.+.|+. ++|.++|+++.+.+.
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~p~~~~~ 236 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF--DRAKECYKEALMVDAKCYEA 236 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCchhhHH
Confidence 79999999999853221 2344678999999999999999 999999999876541
Q ss_pred -----------------------------------------------------------------CcChhhHHHHHHHHH
Q 039177 203 -----------------------------------------------------------------CFGMVDYTNVIRSLV 217 (453)
Q Consensus 203 -----------------------------------------------------------------~~~~~~~~~li~~~~ 217 (453)
+++..+|+.++.+|.
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence 145566777777777
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 039177 218 KKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIK 297 (453)
Q Consensus 218 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~ 297 (453)
+.|++++|+++|+++.+.+.. +..+|..++.+|.+.|++++|..+++++.+.. +.+..+++.++.+|.+.|++++|.+
T Consensus 317 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHH
Confidence 777777777777777765433 66677777777777777777777777776543 3567788888888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 039177 298 MIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGL 377 (453)
Q Consensus 298 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 377 (453)
+|+++.+... .+..+|+.++.+|.+.|++++|.++|+++.+.+.. +..+|..++.+|.+.|++++|.++|+++.+..
T Consensus 395 ~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 471 (597)
T 2xpi_A 395 YFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALF- 471 (597)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 8888877432 35778888888888899999999999888877544 77888888888989999999999998888764
Q ss_pred CCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhC----CCCCC--HHHHHHHHhchhcchh--hHHHHHHHHHHh
Q 039177 378 CTQSSMFDETICGLCQRGLVRKALELLKQMADK----DVSPG--ARVWEALLLSSVSKLD--FVNTSFIRLVDQ 443 (453)
Q Consensus 378 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~ll~a~~~~~~--~~~~~~~~~~~~ 443 (453)
..+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|...++ .+...+.++++.
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 346778888899999999999999999988765 67787 6788888888755444 444446665554
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=5.2e-23 Score=192.47 Aligned_cols=316 Identities=10% Similarity=0.017 Sum_probs=187.5
Q ss_pred ChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHH
Q 039177 79 PPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILN 158 (453)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~ 158 (453)
+...+..+...+...|+++.|...++...+.. +.+...|..+...|.+.|++++|+..|+++...
T Consensus 32 ~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------- 96 (388)
T 1w3b_A 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL------------- 96 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-------------
Confidence 34556667777788888888888888887763 667788888888888888888888888774432
Q ss_pred HHHHCCCcc-ChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039177 159 CMINDGFCV-DGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGI 237 (453)
Q Consensus 159 ~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 237 (453)
.| +..+|..+..++...|+. ++|.+.|+.+.+.. +.+...+..+...+...|++++|+++|+++.+..+
T Consensus 97 -------~p~~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 166 (388)
T 1w3b_A 97 -------KPDFIDGYINLAAALVAAGDM--EGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166 (388)
T ss_dssp -------CTTCHHHHHHHHHHHHHHSCS--SHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT
T ss_pred -------CcchHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 23 233455566666666666 56666666555543 22333455555555566666666666666655432
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 039177 238 KPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTL 317 (453)
Q Consensus 238 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 317 (453)
. +..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...|++..+... .+..++..+
T Consensus 167 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 243 (388)
T 1w3b_A 167 N-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNL 243 (388)
T ss_dssp T-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHHHHHHH
Confidence 2 45555566666666666666666666665543 22344555555556666666666666655555321 134555556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCH
Q 039177 318 LQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLV 397 (453)
Q Consensus 318 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 397 (453)
...|.+.|++++|...|+.+.+.+.. +..+|..+...|.+.|++++|...|+++.+.. +.+..++..+...+.+.|++
T Consensus 244 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 321 (388)
T 1w3b_A 244 ACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNI 321 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCH
Confidence 66666666666666666666555433 44555666666666666666666666665543 33445555566666666666
Q ss_pred HHHHHHHHHHhhCCCCCC-HHHHHHHHhch
Q 039177 398 RKALELLKQMADKDVSPG-ARVWEALLLSS 426 (453)
Q Consensus 398 ~~A~~~~~~m~~~~~~p~-~~~~~~ll~a~ 426 (453)
++|...++++.+ +.|+ ..++..+...+
T Consensus 322 ~~A~~~~~~al~--~~p~~~~~~~~l~~~~ 349 (388)
T 1w3b_A 322 EEAVRLYRKALE--VFPEFAAAHSNLASVL 349 (388)
T ss_dssp HHHHHHHHHHTT--SCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCCcHHHHHHHHHHH
Confidence 666666666553 2332 34444444444
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=3.5e-23 Score=193.63 Aligned_cols=308 Identities=15% Similarity=0.042 Sum_probs=268.0
Q ss_pred CCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHH
Q 039177 76 CEPPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIE 155 (453)
Q Consensus 76 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~ 155 (453)
.+.+..+|..+...+.+.|++++|...|+.+.+.. +.+...|..+..+|.+.|++++|+..|+++.
T Consensus 63 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al------------ 128 (388)
T 1w3b_A 63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSAL------------ 128 (388)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH------------
T ss_pred CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------
Confidence 45678899999999999999999999999999873 5567789999999999999999999988743
Q ss_pred HHHHHHHCCCccC-hHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039177 156 ILNCMINDGFCVD-GKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKS 234 (453)
Q Consensus 156 ~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 234 (453)
.. .|+ ...+..+...+...|+. ++|.+.|+++.+.. +.+..+|..+...|.+.|++++|+..|+++.+
T Consensus 129 ------~~--~p~~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 197 (388)
T 1w3b_A 129 ------QY--NPDLYCVRSDLGNLLKALGRL--EEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197 (388)
T ss_dssp ------HH--CTTCTHHHHHHHHHHHTTSCH--HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred ------Hh--CCCcHHHHHHHHHHHHHccCH--HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 21 344 44667788888889999 99999999998875 44678899999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 039177 235 DGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITY 314 (453)
Q Consensus 235 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 314 (453)
.++. +...|..+...+...|++++|...|++..+.. +.+..++..+..+|.+.|++++|.+.|+.+.+.+. .+..+|
T Consensus 198 ~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~ 274 (388)
T 1w3b_A 198 LDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAY 274 (388)
T ss_dssp HCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHH
T ss_pred cCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHH
Confidence 7544 67889999999999999999999999998754 23578889999999999999999999999998642 256789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhC
Q 039177 315 NTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQR 394 (453)
Q Consensus 315 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 394 (453)
..+..+|.+.|++++|...|+.+.+.... +..++..+...+.+.|++++|...++++.+.. +.+..++..+...|.+.
T Consensus 275 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 352 (388)
T 1w3b_A 275 CNLANALKEKGSVAEAEDCYNTALRLCPT-HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQ 352 (388)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHc
Confidence 99999999999999999999999987544 88899999999999999999999999998753 44567899999999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCC
Q 039177 395 GLVRKALELLKQMADKDVSPG 415 (453)
Q Consensus 395 g~~~~A~~~~~~m~~~~~~p~ 415 (453)
|++++|...|+++.+ +.|+
T Consensus 353 g~~~~A~~~~~~a~~--~~p~ 371 (388)
T 1w3b_A 353 GKLQEALMHYKEAIR--ISPT 371 (388)
T ss_dssp TCCHHHHHHHHHHHT--TCTT
T ss_pred CCHHHHHHHHHHHHh--hCCC
Confidence 999999999999984 5665
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=7.3e-21 Score=181.43 Aligned_cols=314 Identities=9% Similarity=-0.011 Sum_probs=261.5
Q ss_pred CChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHH
Q 039177 78 PPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEIL 157 (453)
Q Consensus 78 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~ 157 (453)
.+...+..+...+.+.|++++|..+|+.+.+.. +.+..++..+..+|...|++++|+..|+++.+
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~------------- 88 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ------------- 88 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-------------
Confidence 456678889999999999999999999999863 66789999999999999999999999887432
Q ss_pred HHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcCh---hhHHHH------------HHHHHhcCCh
Q 039177 158 NCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGM---VDYTNV------------IRSLVKKEKV 222 (453)
Q Consensus 158 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~l------------i~~~~~~g~~ 222 (453)
.+ +.+..++..+..++...|+. ++|...|+.+.+.. +.+. ..+..+ ...+.+.|++
T Consensus 89 -----~~-p~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 89 -----LK-MDFTAARLQRGHLLLKQGKL--DEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY 159 (450)
T ss_dssp -----HC-TTCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred -----cC-CCcHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 21 23567889999999999999 99999999998865 2233 555555 4448999999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 039177 223 FDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACM 302 (453)
Q Consensus 223 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 302 (453)
++|+..|+++.+.... +..++..+..+|.+.|++++|..+|+++.+.. +.+..++..+...|...|++++|...|+.+
T Consensus 160 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 160 TAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999886543 78899999999999999999999999998754 356889999999999999999999999999
Q ss_pred HHCCCCCC-HHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHhcCCHHHH
Q 039177 303 EELGSKPD-VITYNTL------------LQALCKVRELNRLRELVKEMKWKGIVLN----LQTYSIMIDGLASKGDIIEA 365 (453)
Q Consensus 303 ~~~~~~p~-~~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A 365 (453)
.+.. |+ ...+..+ ...|.+.|++++|..+|+.+.+.... + ...|..+..++.+.|++++|
T Consensus 238 ~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 238 LKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHhC--CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHH
Confidence 8753 44 4445444 78999999999999999999986433 2 45788999999999999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 039177 366 CGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADKDVSPGARVWEALL 423 (453)
Q Consensus 366 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 423 (453)
...++++.+.. +.+...|..+..+|...|++++|...++++.+ +.|+.......+
T Consensus 315 ~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l 369 (450)
T 2y4t_A 315 IRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGL 369 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHH
Confidence 99999998764 34678899999999999999999999999984 567644443333
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2e-20 Score=181.45 Aligned_cols=344 Identities=9% Similarity=-0.041 Sum_probs=262.7
Q ss_pred hHHHHHHHhhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhc
Q 039177 63 ILSSLLHSFSIYNCEPPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKI 142 (453)
Q Consensus 63 ~~~~ll~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 142 (453)
.+...++.....+ |++..|..+..++.+.|+++.|...++.+.+.. +.+...+..+..+|.+.|++++|+..|+++
T Consensus 24 ~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 99 (514)
T 2gw1_A 24 DAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFADAMFDLSVL 99 (514)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444455444433 789999999999999999999999999999874 667889999999999999999999999876
Q ss_pred ccCC----------------------------------------------------------------------------
Q 039177 143 PKFR---------------------------------------------------------------------------- 146 (453)
Q Consensus 143 ~~~~---------------------------------------------------------------------------- 146 (453)
...+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (514)
T 2gw1_A 100 SLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFAN 179 (514)
T ss_dssp HHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSS
T ss_pred HhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHH
Confidence 3322
Q ss_pred ----------------------CCcHHHHHHHHHHHHH-----CCC--------ccChHhHHHHHHHHHhcCCCChHHHH
Q 039177 147 ----------------------INRVGFAIEILNCMIN-----DGF--------CVDGKTCSLILSSVCEQRDLSSDELL 191 (453)
Q Consensus 147 ----------------------~~~~~~a~~~~~~m~~-----~~~--------~p~~~~~~~ll~~~~~~~~~~~~~a~ 191 (453)
.|++++|+.+|+.+.. ... +.+..++..+...+...|+. ++|.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~A~ 257 (514)
T 2gw1_A 180 YDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDP--LGAH 257 (514)
T ss_dssp CCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCH--HHHH
T ss_pred hcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCH--HHHH
Confidence 4678888888888776 211 22345677777788888888 8888
Q ss_pred HHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039177 192 GFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLG 271 (453)
Q Consensus 192 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 271 (453)
..++.+.+.. |+...+..+...|...|++++|++.++++.+.... +..++..+...+...|++++|...++...+..
T Consensus 258 ~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 334 (514)
T 2gw1_A 258 EDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELD 334 (514)
T ss_dssp HHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC
T ss_pred HHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 8888887765 33777888888888888888888888888776433 56678888888888888888888888887754
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cC----H
Q 039177 272 LVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIV-LN----L 346 (453)
Q Consensus 272 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~ 346 (453)
+.+...+..+...|...|++++|...++.+.+... .+..++..+...|.+.|++++|...++.+.+.... ++ .
T Consensus 335 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 412 (514)
T 2gw1_A 335 -PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGI 412 (514)
T ss_dssp -SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCS
T ss_pred -hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHH
Confidence 23566777788888888888888888888877532 24567788888888888888888888887765222 11 3
Q ss_pred HHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 039177 347 QTYSIMIDGLAS---KGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADKDVSPGARVWE 420 (453)
Q Consensus 347 ~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 420 (453)
..+..+...|.. .|++++|...|+++.+.. ..+...+..+...|.+.|++++|...|++..+ +.|+.....
T Consensus 413 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~ 486 (514)
T 2gw1_A 413 APLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTMEEKL 486 (514)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHHHHH
T ss_pred HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hccccHHHH
Confidence 477888888888 888888888888887764 33556677788888888888888888888874 355544433
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=1.1e-19 Score=173.25 Aligned_cols=310 Identities=9% Similarity=0.029 Sum_probs=246.8
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHH
Q 039177 101 SVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCVDGKTCSLILSSVC 180 (453)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 180 (453)
..+..+.... +.+...+..+...|.+.|++++|+.+|+++. .. .+.+..++..+..++.
T Consensus 13 ~~~~~~~~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l------------------~~-~p~~~~~~~~l~~~~~ 71 (450)
T 2y4t_A 13 LGTENLYFQS--MADVEKHLELGKKLLAAGQLADALSQFHAAV------------------DG-DPDNYIAYYRRATVFL 71 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------HH-CTTCHHHHHHHHHHHH
T ss_pred cccccccccc--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH------------------Hh-CCccHHHHHHHHHHHH
Confidence 3344444332 6678899999999999999999999998743 21 2346788999999999
Q ss_pred hcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---HHHHHHH---------
Q 039177 181 EQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDI---VCYTMVL--------- 248 (453)
Q Consensus 181 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~ll--------- 248 (453)
..|+. ++|...|+.+.+.+ +.+..++..+...|.+.|++++|.+.|+++.+.... +. ..+..+.
T Consensus 72 ~~g~~--~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~ 147 (450)
T 2y4t_A 72 AMGKS--KAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLR 147 (450)
T ss_dssp HTTCH--HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCH--HHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHH
Confidence 99999 99999999999876 456788999999999999999999999999986433 33 5555553
Q ss_pred ---HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 039177 249 ---NGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVR 325 (453)
Q Consensus 249 ---~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 325 (453)
..+...|++++|...|+.+.+.. +.+..++..+..+|.+.|++++|.++|+.+.+.. ..+..++..+...|...|
T Consensus 148 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 225 (450)
T 2y4t_A 148 SQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLG 225 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 44889999999999999998864 3578889999999999999999999999998754 246789999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----hhhHHHHH
Q 039177 326 ELNRLRELVKEMKWKGIVLNLQTYSIM------------IDGLASKGDIIEACGLLEEALNKGLCTQ-----SSMFDETI 388 (453)
Q Consensus 326 ~~~~a~~~~~~~~~~~~~p~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~~~~li 388 (453)
++++|...|+.+.+.... +...+..+ ...|.+.|++++|...|+++.+.. |+ ...|..+.
T Consensus 226 ~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~ 302 (450)
T 2y4t_A 226 DHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERIC 302 (450)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHH
Confidence 999999999999987544 55555555 889999999999999999998853 43 34788889
Q ss_pred HHHHhCCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHhchhcchhh--HHHHHHHHHH
Q 039177 389 CGLCQRGLVRKALELLKQMADKDVSP-GARVWEALLLSSVSKLDF--VNTSFIRLVD 442 (453)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~a~~~~~~~--~~~~~~~~~~ 442 (453)
..+.+.|++++|+..++++.+. .| +...|..+..+|...++. +...+.+.++
T Consensus 303 ~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 303 HCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9999999999999999998854 44 577888887777555443 4444555544
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.2e-19 Score=175.92 Aligned_cols=350 Identities=13% Similarity=0.034 Sum_probs=279.4
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC--------------
Q 039177 81 EAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFR-------------- 146 (453)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------------- 146 (453)
..+......+.+.|++++|...|+.+.+. .|+..++..+..+|.+.|++++|+..|+++.+.+
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALEL---KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhc---CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 45667778899999999999999999988 3689999999999999999999999999877644
Q ss_pred --CCcHHHHHHHHHHHHHCCCccC--------------------------------------------------------
Q 039177 147 --INRVGFAIEILNCMINDGFCVD-------------------------------------------------------- 168 (453)
Q Consensus 147 --~~~~~~a~~~~~~m~~~~~~p~-------------------------------------------------------- 168 (453)
.|++++|+..|+.+...+- ++
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 7999999999999887542 11
Q ss_pred -----------------------hHhHHHHHHHHHh---cCCCChHHHHHHHHHHHH-----cCC--------CcChhhH
Q 039177 169 -----------------------GKTCSLILSSVCE---QRDLSSDELLGFVQEMKK-----LGF--------CFGMVDY 209 (453)
Q Consensus 169 -----------------------~~~~~~ll~~~~~---~~~~~~~~a~~~~~~~~~-----~g~--------~~~~~~~ 209 (453)
...+......+.. .|++ ++|...|+++.+ ..- +.+..++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESY--DKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHH--HHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccH--HHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 1122222222222 6777 999999999887 311 2345678
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 039177 210 TNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQ 289 (453)
Q Consensus 210 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 289 (453)
..+...+...|++++|...|+++.+.... ..++..+..++...|++++|...++.+.+.. +.+...+..+...|...
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHh
Confidence 89999999999999999999999887544 8889999999999999999999999998864 34677888999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 039177 290 NNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLL 369 (453)
Q Consensus 290 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 369 (453)
|++++|...|+...+.... +...+..+...|...|++++|..+++.+.+.... +..++..+...|...|++++|...+
T Consensus 318 ~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999986432 5678899999999999999999999999887544 6678999999999999999999999
Q ss_pred HHHHHCCCC-CC----hhhHHHHHHHHHh---CCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHhchhcch--hhHHHHHH
Q 039177 370 EEALNKGLC-TQ----SSMFDETICGLCQ---RGLVRKALELLKQMADKDVSP-GARVWEALLLSSVSKL--DFVNTSFI 438 (453)
Q Consensus 370 ~~m~~~~~~-~~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~a~~~~~--~~~~~~~~ 438 (453)
+++.+.... ++ ...+..+...+.. .|++++|...++++.+. .| +...+..+-..+...+ +.+...+.
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 998765211 11 2378888999999 99999999999999864 34 4555555655554443 44444455
Q ss_pred HHHHh
Q 039177 439 RLVDQ 443 (453)
Q Consensus 439 ~~~~~ 443 (453)
+.++.
T Consensus 474 ~a~~~ 478 (514)
T 2gw1_A 474 ESADL 478 (514)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55443
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=5.1e-18 Score=156.27 Aligned_cols=309 Identities=9% Similarity=-0.023 Sum_probs=254.9
Q ss_pred ChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHH
Q 039177 79 PPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILN 158 (453)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~ 158 (453)
|+..+..+...+...|++++|...|+.+.+.. +.+..++..+...|...|++++|+..|+++.+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-------------- 65 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIA-------------- 65 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--------------
Confidence 35567788889999999999999999999874 56788999999999999999999999887432
Q ss_pred HHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCC---cChhhHHHH------------HHHHHhcCChh
Q 039177 159 CMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFC---FGMVDYTNV------------IRSLVKKEKVF 223 (453)
Q Consensus 159 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~l------------i~~~~~~g~~~ 223 (453)
. .+-+...+..+...+...|+. ++|...++.+.+.. + .+...+..+ ...+...|+++
T Consensus 66 ----~-~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 66 ----L-KMDFTAARLQRGHLLLKQGKL--DEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYT 137 (359)
T ss_dssp ----H-CTTCHHHHHHHHHHHHHHTCH--HHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ----h-CCCcchHHHHHHHHHHHcCCh--HHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHH
Confidence 1 122567888999999999999 99999999998875 2 244445554 58899999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039177 224 DALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACME 303 (453)
Q Consensus 224 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 303 (453)
+|++.++++.+.... +...+..+...+...|++++|...++...+.. +.+..++..+...|...|++++|...|+...
T Consensus 138 ~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 138 AAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999886543 78889999999999999999999999998864 4577889999999999999999999999998
Q ss_pred HCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHhcCCHHHHHH
Q 039177 304 ELGSKPDVITYN------------TLLQALCKVRELNRLRELVKEMKWKGIVLNL----QTYSIMIDGLASKGDIIEACG 367 (453)
Q Consensus 304 ~~~~~p~~~~~~------------~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~ 367 (453)
+.... +...+. .+...+.+.|++++|...++.+.+.... +. ..+..+..+|.+.|++++|..
T Consensus 216 ~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 85422 333333 2366789999999999999999987544 33 235567889999999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHH
Q 039177 368 LLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADKDVSPGARV 418 (453)
Q Consensus 368 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 418 (453)
.+++..+.. +.+...+..+...|...|++++|...|++..+ +.|+...
T Consensus 294 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~ 341 (359)
T 3ieg_A 294 ICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQ 341 (359)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHH
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChH
Confidence 999998864 34677889999999999999999999999994 5676443
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.84 E-value=1e-17 Score=163.40 Aligned_cols=322 Identities=12% Similarity=0.002 Sum_probs=248.9
Q ss_pred CCChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC----------
Q 039177 77 EPPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFR---------- 146 (453)
Q Consensus 77 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---------- 146 (453)
+.++.+|..+...+.+.|++++|...++.+.+.. +.+...+..+..+|...|++++|+..|+.+....
T Consensus 56 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 133 (537)
T 3fp2_A 56 PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPM 133 (537)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHH
Confidence 3467889999999999999999999999999874 6678899999999999999999999885432110
Q ss_pred --------------------------------------------------------------------------------
Q 039177 147 -------------------------------------------------------------------------------- 146 (453)
Q Consensus 147 -------------------------------------------------------------------------------- 146 (453)
T Consensus 134 ~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 213 (537)
T 3fp2_A 134 LERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLV 213 (537)
T ss_dssp HHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHH
Confidence
Q ss_pred -CCcHHHHHHHHHHHHHCCCccC--------hHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHH
Q 039177 147 -INRVGFAIEILNCMINDGFCVD--------GKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLV 217 (453)
Q Consensus 147 -~~~~~~a~~~~~~m~~~~~~p~--------~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 217 (453)
.+++++|+.+++.+... .|+ ..++..+...+...|+. ++|...++.+.+.. |+...|..+...|.
T Consensus 214 a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~--~~A~~~~~~~~~~~--~~~~~~~~l~~~~~ 287 (537)
T 3fp2_A 214 ANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNL--LDAQVLLQESINLH--PTPNSYIFLALTLA 287 (537)
T ss_dssp HHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHC--CCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccH--HHHHHHHHHHHhcC--CCchHHHHHHHHHH
Confidence 02567777777777753 333 22466666777788887 88898888888865 55777888888888
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 039177 218 KKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIK 297 (453)
Q Consensus 218 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~ 297 (453)
..|++++|++.|+++.+.... +..+|..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|..
T Consensus 288 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 365 (537)
T 3fp2_A 288 DKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEA 365 (537)
T ss_dssp CSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 899999999999888876543 67788888888889999999999998888754 2346678888888889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CcCHHHHHHHHHHHHhc----------CCH
Q 039177 298 MIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGI-----VLNLQTYSIMIDGLASK----------GDI 362 (453)
Q Consensus 298 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----~p~~~~~~~li~~~~~~----------g~~ 362 (453)
.++.+.+... .+...+..+...|...|++++|...|+.+.+... ......+..+...|... |++
T Consensus 366 ~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 444 (537)
T 3fp2_A 366 FFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444 (537)
T ss_dssp HHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHH
T ss_pred HHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHH
Confidence 9988887542 2456788888888899999999999888776421 11222344455667777 889
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhC
Q 039177 363 IEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADK 410 (453)
Q Consensus 363 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 410 (453)
++|...|++..+.. +.+...+..+...|.+.|++++|.+.|++..+.
T Consensus 445 ~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 445 NAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999888764 345667888888899999999999999988853
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=1.1e-17 Score=152.25 Aligned_cols=227 Identities=11% Similarity=-0.065 Sum_probs=109.6
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 039177 175 ILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKE-KVFDALGILNQMKSDGIKPDIVCYTMVLNGVIV 253 (453)
Q Consensus 175 ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 253 (453)
++..+...|+. ++|..+++++.+.. +.+...|..+...+...| ++++|++.|++..+.... +...|..+...+..
T Consensus 62 ~~~~~~~~~~~--~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~ 137 (330)
T 3hym_B 62 HIGTLVELNKA--NELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAV 137 (330)
T ss_dssp HHHHHHHHTCH--HHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHhhhH--HHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHH
Confidence 33334444444 44444444444332 223344444444555555 455555555555443222 33444455555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 039177 254 QEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLREL 333 (453)
Q Consensus 254 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 333 (453)
.|++++|...+++..+.. +.+...+..+...|...|++++|...++...+... .+...+..+...|...|++++|...
T Consensus 138 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~ 215 (330)
T 3hym_B 138 ESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKW 215 (330)
T ss_dssp HTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHH
Confidence 555555555555554432 11233344445555555555555555555554321 2344555555555555555555555
Q ss_pred HHHHHHCC--------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHH
Q 039177 334 VKEMKWKG--------IVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLK 405 (453)
Q Consensus 334 ~~~~~~~~--------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 405 (453)
++.+.+.. ...+..++..+...|...|++++|...+++..+.. ..+...+..+...|.+.|++++|...++
T Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 294 (330)
T 3hym_B 216 FLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFH 294 (330)
T ss_dssp HHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 55554421 01123455555555555566666666555555443 2234445555555555666666666665
Q ss_pred HHh
Q 039177 406 QMA 408 (453)
Q Consensus 406 ~m~ 408 (453)
+..
T Consensus 295 ~al 297 (330)
T 3hym_B 295 TAL 297 (330)
T ss_dssp TTT
T ss_pred HHH
Confidence 555
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.83 E-value=7.3e-18 Score=164.40 Aligned_cols=352 Identities=12% Similarity=0.048 Sum_probs=264.9
Q ss_pred ChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC------------
Q 039177 79 PPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFR------------ 146 (453)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------------ 146 (453)
....|..+...+.+.|++++|...|+.+.+.. +.+...+..+..+|.+.|++++|+..|+++.+.+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 34567788899999999999999999999874 6688999999999999999999999999977654
Q ss_pred ----CCcHHHHHHHHHHHHHCCC------------------------------------ccChHhHH-------------
Q 039177 147 ----INRVGFAIEILNCMINDGF------------------------------------CVDGKTCS------------- 173 (453)
Q Consensus 147 ----~~~~~~a~~~~~~m~~~~~------------------------------------~p~~~~~~------------- 173 (453)
.|++++|+..|+.+....- .|+.....
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 6889999988863311110 01111000
Q ss_pred -------------HHHHHHHhc------------CCCChHHHHHHHHHHHHcCCCcC--------hhhHHHHHHHHHhcC
Q 039177 174 -------------LILSSVCEQ------------RDLSSDELLGFVQEMKKLGFCFG--------MVDYTNVIRSLVKKE 220 (453)
Q Consensus 174 -------------~ll~~~~~~------------~~~~~~~a~~~~~~~~~~g~~~~--------~~~~~~li~~~~~~g 220 (453)
.+..++... +++ ++|..+++.+.+.. |+ ..++..+...+...|
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~--~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLL--TKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHH--HHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHH--HHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcc
Confidence 011111111 244 77888888887764 33 235777788899999
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 039177 221 KVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIA 300 (453)
Q Consensus 221 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 300 (453)
++++|+..|++..+.. |+..+|..+...+...|++++|...++...+.. +.+..++..+...|...|++++|...|+
T Consensus 258 ~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 258 NLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9999999999999864 457888899999999999999999999998865 3467889999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----
Q 039177 301 CMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKG---- 376 (453)
Q Consensus 301 ~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---- 376 (453)
...+... .+...+..+...|...|++++|..+++.+.+.... +...+..+...|...|++++|...|+++.+..
T Consensus 335 ~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 335 KAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 9988642 24678999999999999999999999999988554 67789999999999999999999999987642
Q ss_pred -CCCChhhHHHHHHHHHhC----------CCHHHHHHHHHHHhhCCCCC-CHHHHHHHHhchhcc--hhhHHHHHHHHHH
Q 039177 377 -LCTQSSMFDETICGLCQR----------GLVRKALELLKQMADKDVSP-GARVWEALLLSSVSK--LDFVNTSFIRLVD 442 (453)
Q Consensus 377 -~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~a~~~~--~~~~~~~~~~~~~ 442 (453)
.......+..+...+... |++++|...|++..+. .| +...+..+-..+... .+.+...+.+.++
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 111222244445677777 9999999999999864 34 455666665555444 4444444555544
Q ss_pred h
Q 039177 443 Q 443 (453)
Q Consensus 443 ~ 443 (453)
.
T Consensus 491 ~ 491 (537)
T 3fp2_A 491 L 491 (537)
T ss_dssp H
T ss_pred h
Confidence 3
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=1.9e-17 Score=150.70 Aligned_cols=296 Identities=9% Similarity=-0.077 Sum_probs=244.3
Q ss_pred CCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHH
Q 039177 75 NCEPPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAI 154 (453)
Q Consensus 75 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~ 154 (453)
+.+.++..+..+...+...|++++|..+++.+.+. .+.+...+..++..+...|++++|..+|+++.
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~----------- 83 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK--DPFHASCLPVHIGTLVELNKANELFYLSHKLV----------- 83 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHH-----------
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHH-----------
Confidence 45677788889999999999999999999999986 35566677788899999999999999888743
Q ss_pred HHHHHHHHCCCccChHhHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 039177 155 EILNCMINDGFCVDGKTCSLILSSVCEQR-DLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMK 233 (453)
Q Consensus 155 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 233 (453)
.. .+.+...+..+...+...| +. ++|...|+...+.. +.+...|..+...|...|++++|++.|+++.
T Consensus 84 -------~~-~~~~~~~~~~l~~~~~~~~~~~--~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 152 (330)
T 3hym_B 84 -------DL-YPSNPVSWFAVGCYYLMVGHKN--EHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAA 152 (330)
T ss_dssp -------HH-CTTSTHHHHHHHHHHHHSCSCH--HHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -------Hh-CcCCHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 21 1335678888999999999 77 89999999998875 4467789999999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------
Q 039177 234 SDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELG------- 306 (453)
Q Consensus 234 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------- 306 (453)
+.... +...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++...+..
T Consensus 153 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 230 (330)
T 3hym_B 153 QLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEV 230 (330)
T ss_dssp HHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSC
T ss_pred Hhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccc
Confidence 86544 56677789999999999999999999998865 3567889999999999999999999999988632
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 039177 307 -SKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFD 385 (453)
Q Consensus 307 -~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 385 (453)
...+..++..+...|.+.|++++|...++...+.... +...+..+...|.+.|++++|...|++..+.. +.+...+.
T Consensus 231 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 308 (330)
T 3hym_B 231 TVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVT 308 (330)
T ss_dssp TTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHH
Confidence 1234578999999999999999999999999987655 77889999999999999999999999987654 33556677
Q ss_pred HHHHHH-HhCCCHH
Q 039177 386 ETICGL-CQRGLVR 398 (453)
Q Consensus 386 ~li~~~-~~~g~~~ 398 (453)
.+..++ ...|+.+
T Consensus 309 ~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 309 MLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHTTTTC--
T ss_pred HHHHHHHHHhCchh
Confidence 777766 4555543
No 16
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.81 E-value=8.2e-20 Score=179.74 Aligned_cols=114 Identities=11% Similarity=0.112 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 039177 277 YTYNVYINGLCKQNNVEAGIKMIACMEE---LGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMI 353 (453)
Q Consensus 277 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li 353 (453)
.+||++|++||+.|++++|.++|..|.+ .|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..||++||
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3444555555555555555544444332 2444455555555555555555555555555555555555555555555
Q ss_pred HHHHhcCC-HHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 039177 354 DGLASKGD-IIEACGLLEEALNKGLCTQSSMFDETICG 390 (453)
Q Consensus 354 ~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 390 (453)
.++++.|+ .++|.++|++|.+.|+.||..+|++++.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~ 245 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSE 245 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccCh
Confidence 55554444 23444455555544555555554444433
No 17
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.80 E-value=1.2e-19 Score=178.60 Aligned_cols=119 Identities=14% Similarity=0.126 Sum_probs=88.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 039177 205 GMVDYTNVIRSLVKKEKVFDALGILNQMKS---DGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNV 281 (453)
Q Consensus 205 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 281 (453)
-..+||+||++|++.|++++|.++|++|.+ .|+.||++|||+||.+|++.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345677777777777777777777766653 46777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 039177 282 YINGLCKQNN-VEAGIKMIACMEELGSKPDVITYNTLLQALCK 323 (453)
Q Consensus 282 li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 323 (453)
+|.++|+.|+ .++|.++|++|.+.|+.||..+|+.++..+.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 7777777776 46677777777777777777777777765544
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.79 E-value=2e-17 Score=153.07 Aligned_cols=288 Identities=12% Similarity=-0.017 Sum_probs=175.8
Q ss_pred cCCcchHHH-HHHHHHHcCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCccCh
Q 039177 93 NSQFCDISS-VLDHIEKRENFET--PEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCVDG 169 (453)
Q Consensus 93 ~~~~~~a~~-~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 169 (453)
.|+++.|.. .++.......-.| +...+..+...|.+.|++++|+..|+++. .. .+.+.
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al------------------~~-~p~~~ 98 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAV------------------QQ-DPKHM 98 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHH------------------HS-CTTCH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHH------------------Hh-CCCCH
Confidence 355666665 5554433211111 23345566666777777777666666532 21 12345
Q ss_pred HhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH---
Q 039177 170 KTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTM--- 246 (453)
Q Consensus 170 ~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~--- 246 (453)
.++..+..++...|+. ++|...++.+.+.. +.+..++..+...|...|++++|++.|+++.+.... +...+..
T Consensus 99 ~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~ 174 (368)
T 1fch_A 99 EAWQYLGTTQAENEQE--LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEE 174 (368)
T ss_dssp HHHHHHHHHHHHTTCH--HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC----
T ss_pred HHHHHHHHHHHHCcCH--HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHH
Confidence 5666666777777776 77777777766654 345666777777777777777777777777665432 2222211
Q ss_pred ------------HHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 039177 247 ------------VLNGVIVQEDYVKAEELFDELLVLGLVP-DVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVIT 313 (453)
Q Consensus 247 ------------ll~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 313 (453)
.+..+...|++++|...|+++.+..... +..++..+...|.+.|++++|...|+.+.+.. ..+..+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~ 253 (368)
T 1fch_A 175 GAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLL 253 (368)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHH
Confidence 1333336777777777777776643211 36667777777777777777777777777643 124567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----------Chhh
Q 039177 314 YNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCT----------QSSM 383 (453)
Q Consensus 314 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----------~~~~ 383 (453)
+..+...|.+.|++++|...|+.+.+.... +..++..+..+|.+.|++++|...|+++.+..... ...+
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 332 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENI 332 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHH
Confidence 777777777777777777777777765433 56677777777777777777777777776542111 1456
Q ss_pred HHHHHHHHHhCCCHHHHHHHHH
Q 039177 384 FDETICGLCQRGLVRKALELLK 405 (453)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~~~~ 405 (453)
|..+..+|...|++++|..+++
T Consensus 333 ~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 333 WSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHHHHHHhCChHhHHHhHH
Confidence 7777777777777777776655
No 19
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.79 E-value=1.1e-15 Score=140.56 Aligned_cols=301 Identities=10% Similarity=0.025 Sum_probs=236.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHH
Q 039177 115 PEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFV 194 (453)
Q Consensus 115 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~ 194 (453)
+...+..+...+...|++++|+..|+++. .. .+.+..++..+...+...|+. ++|...+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l------------------~~-~p~~~~~~~~~a~~~~~~~~~--~~A~~~~ 60 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAV------------------DG-DPDNYIAYYRRATVFLAMGKS--KAALPDL 60 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------HH-CTTCHHHHHHHHHHHHHHTCH--HHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------hh-CcccHHHHHHHHHHHHHccCH--HHHHHHH
Confidence 45677888899999999999999988743 21 133567888999999999999 9999999
Q ss_pred HHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CCHHHHHHH------------HHHHHhcCCHHHH
Q 039177 195 QEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIK--PDIVCYTMV------------LNGVIVQEDYVKA 260 (453)
Q Consensus 195 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~l------------l~~~~~~g~~~~a 260 (453)
+.+.+.. +.+...|..+...|...|++++|+..|+++.+.... .+...+..+ ...+...|++++|
T Consensus 61 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 139 (359)
T 3ieg_A 61 TKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAA 139 (359)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 9998875 446788999999999999999999999999986431 144455444 5788899999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 261 EELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWK 340 (453)
Q Consensus 261 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 340 (453)
...++++.+.. +.+...+..+...+...|++++|...++.+.+.. ..+..++..+...|...|++++|...++...+.
T Consensus 140 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 140 ITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999998865 3567888999999999999999999999999864 236789999999999999999999999999987
Q ss_pred CCCcCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhCCCHHHHHHHH
Q 039177 341 GIVLNLQTYS------------IMIDGLASKGDIIEACGLLEEALNKGLCTQS----SMFDETICGLCQRGLVRKALELL 404 (453)
Q Consensus 341 ~~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~ 404 (453)
... +...+. .+...+.+.|++++|...++++.+.... +. ..+..+...+...|++++|...+
T Consensus 218 ~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 295 (359)
T 3ieg_A 218 DQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRIC 295 (359)
T ss_dssp CTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred Ccc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 544 444433 2366789999999999999999886422 22 23455778899999999999999
Q ss_pred HHHhhCCCCC-CHHHHHHHHhchhc--chhhHHHHHHHHHHh
Q 039177 405 KQMADKDVSP-GARVWEALLLSSVS--KLDFVNTSFIRLVDQ 443 (453)
Q Consensus 405 ~~m~~~~~~p-~~~~~~~ll~a~~~--~~~~~~~~~~~~~~~ 443 (453)
++..+. .| +..++..+-..+.. ..+.+...+.+.++.
T Consensus 296 ~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 296 SEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999864 45 55666666555543 444444445555543
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=6.2e-17 Score=149.82 Aligned_cols=290 Identities=11% Similarity=0.001 Sum_probs=220.0
Q ss_pred HhcCChhHHHH-HHhhcccCCCCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcC
Q 039177 127 ADAHRFQDSVN-LFYKIPKFRINRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFG 205 (453)
Q Consensus 127 ~~~g~~~~A~~-~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~ 205 (453)
.-.|++++|+. .|++..... ......+...+..+...+...|++ ++|...|+.+.+.. +.+
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~---------------~~~~~~~~~~~~~~~~~~~~~g~~--~~A~~~~~~al~~~-p~~ 97 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFE---------------EENPLRDHPQPFEEGLRRLQEGDL--PNAVLLFEAAVQQD-PKH 97 (368)
T ss_dssp ----------CHHHHCCCCCC---------------SSCTTTTCSSHHHHHHHHHHTTCH--HHHHHHHHHHHHSC-TTC
T ss_pred HHHHHHHHHHhhhhhHHHhcC---------------CCCcccchHHHHHHHHHHHHCCCH--HHHHHHHHHHHHhC-CCC
Confidence 34467777777 776544310 011111355688889999999999 99999999999875 557
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH----
Q 039177 206 MVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNV---- 281 (453)
Q Consensus 206 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~---- 281 (453)
..+|..+...|.+.|++++|++.|+++.+.... +..++..+..++...|++++|...++.+.+.... +...+..
T Consensus 98 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 175 (368)
T 1fch_A 98 MEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG 175 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC-----
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH
Confidence 788999999999999999999999999887544 7889999999999999999999999999886522 2222221
Q ss_pred -----------HHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 039177 282 -----------YINGLCKQNNVEAGIKMIACMEELGSKP-DVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTY 349 (453)
Q Consensus 282 -----------li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 349 (453)
.+..+...|++++|...|+.+.+..... +..++..+...|.+.|++++|...++.+.+.... +..++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~ 254 (368)
T 1fch_A 176 AGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLW 254 (368)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred hhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHH
Confidence 2344448999999999999998864221 4789999999999999999999999999987544 67899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCC---CC-------CHHHH
Q 039177 350 SIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADKDV---SP-------GARVW 419 (453)
Q Consensus 350 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p-------~~~~~ 419 (453)
..+...|...|++++|...|+++.+.. +.+...+..+...|.+.|++++|...|+++.+..- .| ...+|
T Consensus 255 ~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 333 (368)
T 1fch_A 255 NKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIW 333 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHH
Confidence 999999999999999999999998864 34567889999999999999999999999875311 11 15677
Q ss_pred HHHHhchh--cchhhHHHHHH
Q 039177 420 EALLLSSV--SKLDFVNTSFI 438 (453)
Q Consensus 420 ~~ll~a~~--~~~~~~~~~~~ 438 (453)
..+..++. ++.+.+.....
T Consensus 334 ~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 334 STLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHHHHHhCChHhHHHhHH
Confidence 77766654 45555555543
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=1.7e-16 Score=146.81 Aligned_cols=235 Identities=9% Similarity=-0.098 Sum_probs=128.8
Q ss_pred ChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHH
Q 039177 79 PPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILN 158 (453)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~ 158 (453)
+...+..+...+.+.|++++|...|+.+.+.. +.+..++..+...|.+.|++++|+..|+++.+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-------------- 127 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLE-------------- 127 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------------
Confidence 34456667777777888888888888887763 55677777888888888888777777766322
Q ss_pred HHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhh----------HHHHHHHHHhcCChhHHHHH
Q 039177 159 CMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVD----------YTNVIRSLVKKEKVFDALGI 228 (453)
Q Consensus 159 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~----------~~~li~~~~~~g~~~~a~~~ 228 (453)
. .+.+..++..+...+...|+. ++|...++++.+.. +.+... +..+...|.+.|++++|++.
T Consensus 128 ----~-~p~~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 199 (365)
T 4eqf_A 128 ----L-QPNNLKALMALAVSYTNTSHQ--QDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKEL 199 (365)
T ss_dssp ----H-CTTCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHH
T ss_pred ----c-CCCCHHHHHHHHHHHHccccH--HHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHH
Confidence 1 122455667777777777776 77777777766543 111111 22234555555555555555
Q ss_pred HHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 039177 229 LNQMKSDGIK-PDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGS 307 (453)
Q Consensus 229 ~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 307 (453)
|+++.+.... .+..++..+...+...|++++|+..|++..+.. +.+..+|..+..+|.+.|++++|...|+...+...
T Consensus 200 ~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 278 (365)
T 4eqf_A 200 YLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP 278 (365)
T ss_dssp HHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 5555544221 134455555555555555555555555554432 22344455555555555555555555555544321
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 308 KPDVITYNTLLQALCKVRELNRLRELVKEMKW 339 (453)
Q Consensus 308 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 339 (453)
.+..++..+..+|.+.|++++|...|+.+.+
T Consensus 279 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 279 -GFIRSRYNLGISCINLGAYREAVSNFLTALS 309 (365)
T ss_dssp -TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred -CchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1244455555555555555555555554443
No 22
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=1.1e-15 Score=136.38 Aligned_cols=251 Identities=8% Similarity=0.032 Sum_probs=168.4
Q ss_pred HHHHhcCCcchHHHHHHHHHHcCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCC
Q 039177 88 KTLAENSQFCDISSVLDHIEKRENFETPE--FIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGF 165 (453)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~ 165 (453)
+.....|++..|+...+..... .|+. .....+.++|...|+++.|+..++. .-
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~---~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----------------------~~ 61 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS---SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----------------------SS 61 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC---SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----------------------TS
T ss_pred HHHHHHHHHHHHHHHHHhcccC---CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----------------------cC
Confidence 4455667787777777655432 3332 3445567788888888887765543 12
Q ss_pred ccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC-CcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 039177 166 CVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGF-CFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCY 244 (453)
Q Consensus 166 ~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 244 (453)
+|+..++..+...+...++. +++.+.++++...+. +-+...+..+...|.+.|++++|++.+++ +.+...+
T Consensus 62 ~~~~~a~~~la~~~~~~~~~--~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~ 133 (291)
T 3mkr_A 62 APELQAVRMFAEYLASHSRR--DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECM 133 (291)
T ss_dssp CHHHHHHHHHHHHHHCSTTH--HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHH
T ss_pred ChhHHHHHHHHHHHcCCCcH--HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHH
Confidence 45556677777777777776 778888887776653 33455566667777888888888887776 3466777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 039177 245 TMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTY---NVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQAL 321 (453)
Q Consensus 245 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 321 (453)
..+...+.+.|++++|.+.|+.+.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++
T Consensus 134 ~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~ 210 (291)
T 3mkr_A 134 AMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACH 210 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 777777888888888888888877653 443211 122233344577788888887777653 34666777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHC
Q 039177 322 CKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIE-ACGLLEEALNK 375 (453)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~ 375 (453)
.+.|++++|...|+++.+.... +..++..++..+...|+.++ +.++++++.+.
T Consensus 211 ~~~g~~~eA~~~l~~al~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 211 MAQGRWEAAEGVLQEALDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 7888888888888877776554 66677777777777777765 46777777664
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=1.2e-16 Score=147.85 Aligned_cols=234 Identities=11% Similarity=-0.072 Sum_probs=195.5
Q ss_pred ChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 039177 168 DGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMV 247 (453)
Q Consensus 168 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 247 (453)
+...+..+...+.+.|++ ++|...|+.+.+.. +.+..+|..+...|.+.|++++|++.|+++.+.... +..+|..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~--~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDL--PVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCH--HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCH--HHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHH
Confidence 445688888999999999 99999999998875 557888999999999999999999999999886543 68899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHH
Q 039177 248 LNGVIVQEDYVKAEELFDELLVLGLVPD-----------VYTYNVYINGLCKQNNVEAGIKMIACMEELGSK-PDVITYN 315 (453)
Q Consensus 248 l~~~~~~g~~~~a~~~~~~m~~~g~~~~-----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~ 315 (453)
..+|...|++++|...|+++.+.. |+ ...+..+...+...|++++|...|+++.+.... ++..++.
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 217 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQT 217 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHH
Confidence 999999999999999999998743 22 222334578899999999999999999986422 1578999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCC
Q 039177 316 TLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRG 395 (453)
Q Consensus 316 ~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 395 (453)
.+...|.+.|++++|...|+.+.+.... +..+|..+..+|...|++++|...|+++.+.. +.+...+..+...|.+.|
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 9999999999999999999999987554 78899999999999999999999999998864 345778899999999999
Q ss_pred CHHHHHHHHHHHhh
Q 039177 396 LVRKALELLKQMAD 409 (453)
Q Consensus 396 ~~~~A~~~~~~m~~ 409 (453)
++++|...|+++.+
T Consensus 296 ~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 296 AYREAVSNFLTALS 309 (365)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999999885
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.75 E-value=4.8e-16 Score=141.14 Aligned_cols=265 Identities=11% Similarity=-0.069 Sum_probs=209.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHH
Q 039177 117 FIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQE 196 (453)
Q Consensus 117 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~ 196 (453)
..+..+...+...|++++|+.+|+++. .. .+.+..++..+..++...|+. ++|...+++
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~------------------~~-~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~ 80 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVC------------------QA-APEREEAWRSLGLTQAENEKD--GLAIIALNH 80 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHH------------------HH-CTTCHHHHHHHHHHHHHTTCH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHH------------------Hh-CCCCHHHHHHHHHHHHHcCCH--HHHHHHHHH
Confidence 345667778888888888888887733 22 123566788888899999998 999999999
Q ss_pred HHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH--------------HH-HHHhcCCHHHHH
Q 039177 197 MKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMV--------------LN-GVIVQEDYVKAE 261 (453)
Q Consensus 197 ~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l--------------l~-~~~~~g~~~~a~ 261 (453)
+.+.. +.+..++..+...|...|++++|++.++++.+.... +...+..+ .. .+...|++++|.
T Consensus 81 a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 158 (327)
T 3cv0_A 81 ARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECR 158 (327)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHH
T ss_pred HHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHH
Confidence 88875 456778999999999999999999999999876433 33333333 22 377788999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039177 262 ELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKG 341 (453)
Q Consensus 262 ~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 341 (453)
..++++.+.. +.+...+..+...|...|++++|.+.++.+.+... .+..++..+...|...|++++|...++.+.+..
T Consensus 159 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 236 (327)
T 3cv0_A 159 TLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN 236 (327)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 9999988765 34678888899999999999999999999887542 357788999999999999999999999988875
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------ChhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 039177 342 IVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCT-----------QSSMFDETICGLCQRGLVRKALELLKQM 407 (453)
Q Consensus 342 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (453)
.. +..++..+...|...|++++|.+.++++.+..... +...+..+...+.+.|++++|..++++.
T Consensus 237 ~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 237 PG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred CC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 44 67889999999999999999999999887754221 4667888899999999999999887754
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.75 E-value=6.5e-16 Score=140.25 Aligned_cols=267 Identities=7% Similarity=-0.088 Sum_probs=220.1
Q ss_pred ChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHH
Q 039177 79 PPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILN 158 (453)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~ 158 (453)
+...+-.....+...|++++|..+|+.+.+.. +.+...+..+...|...|++++|...|+++.+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-------------- 83 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARM-------------- 83 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------------
Confidence 44556777888999999999999999999874 56788999999999999999999999887432
Q ss_pred HHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHH--------------HH-HHHhcCChh
Q 039177 159 CMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNV--------------IR-SLVKKEKVF 223 (453)
Q Consensus 159 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l--------------i~-~~~~~g~~~ 223 (453)
. .+.+..++..+...+...|+. ++|.+.++.+.+.. +.+...+..+ .. .+...|+++
T Consensus 84 ----~-~~~~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 84 ----L-DPKDIAVHAALAVSHTNEHNA--NAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp ----H-CTTCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHH
T ss_pred ----c-CcCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHH
Confidence 1 133567888899999999999 99999999998865 2233334433 23 377889999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039177 224 DALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACME 303 (453)
Q Consensus 224 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 303 (453)
+|.+.++++.+.... +..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...|+.+.
T Consensus 156 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 156 ECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999886544 78899999999999999999999999998864 3467889999999999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039177 304 ELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVL-----------NLQTYSIMIDGLASKGDIIEACGLLEEA 372 (453)
Q Consensus 304 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m 372 (453)
+... .+..++..+...|.+.|++++|...++.+.+..... +..+|..+..+|.+.|+.++|..++++.
T Consensus 234 ~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 234 DINP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HcCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 8542 357789999999999999999999999998764332 4678999999999999999999998754
No 26
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.73 E-value=5e-13 Score=128.61 Aligned_cols=325 Identities=12% Similarity=0.023 Sum_probs=244.0
Q ss_pred CCCcchHHHHHHHhhhcCCCCChhhHHHHHHHHHh----cCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----c
Q 039177 58 PKQPHILSSLLHSFSIYNCEPPPEAYHFVIKTLAE----NSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYAD----A 129 (453)
Q Consensus 58 ~~~~~~~~~ll~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 129 (453)
+.+.......++.....| ++..+..+...+.. .++++.|...|+...+. | +...+..|...|.. .
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-G---LPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCC
Confidence 445555555555444433 56677777777777 88888888888888765 2 55667777788877 7
Q ss_pred CChhHHHHHHhhcccCC------------------CCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHh----cCCCCh
Q 039177 130 HRFQDSVNLFYKIPKFR------------------INRVGFAIEILNCMINDGFCVDGKTCSLILSSVCE----QRDLSS 187 (453)
Q Consensus 130 g~~~~A~~~~~~~~~~~------------------~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~ 187 (453)
+++++|+..|++..+.+ .++.++|++.|+...+.| +...+..+...+.. .++.
T Consensus 129 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~-- 203 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERND-- 203 (490)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH--
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCH--
Confidence 78888888888765544 457888888888887764 56667777777766 5666
Q ss_pred HHHHHHHHHHHHcCCCcChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHH
Q 039177 188 DELLGFVQEMKKLGFCFGMVDYTNVIRSLVK----KEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIV----QEDYVK 259 (453)
Q Consensus 188 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~ 259 (453)
++|.+.|+...+.| +...+..+...|.. .+++++|.++|++..+.| +...+..+...|.. .++.++
T Consensus 204 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~ 277 (490)
T 2xm6_A 204 AISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLK 277 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHH
Confidence 88888888887765 45677777777776 788888888888887764 45566667777777 788888
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHH
Q 039177 260 AEELFDELLVLGLVPDVYTYNVYINGLCKQ-----NNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVR---ELNRLR 331 (453)
Q Consensus 260 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~a~ 331 (453)
|...|+...+.| +...+..+...|... ++.++|...|+...+.| +...+..+...|.+.| ++++|.
T Consensus 278 A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~ 351 (490)
T 2xm6_A 278 ALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAV 351 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHH
Confidence 888888887754 455666777777776 78889998888888764 4566777777777756 788888
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----CCCHHHHHHH
Q 039177 332 ELVKEMKWKGIVLNLQTYSIMIDGLAS----KGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQ----RGLVRKALEL 403 (453)
Q Consensus 332 ~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~ 403 (453)
..|+...+.| +...+..|...|.. .+++++|...|++..+.+ +...+..|...|.+ .+++++|..+
T Consensus 352 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 425 (490)
T 2xm6_A 352 EWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAW 425 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 8888888774 67788888888888 788999999999888876 45667777778877 7889999999
Q ss_pred HHHHhhCCC
Q 039177 404 LKQMADKDV 412 (453)
Q Consensus 404 ~~~m~~~~~ 412 (453)
|++..+.+.
T Consensus 426 ~~~A~~~~~ 434 (490)
T 2xm6_A 426 FDTASTNDM 434 (490)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHCCC
Confidence 999887653
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=1.9e-15 Score=134.73 Aligned_cols=259 Identities=13% Similarity=0.069 Sum_probs=204.9
Q ss_pred HHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCccCh--HhHHHHHHHHHhcCCCChHHHHHHHHHHHHcC
Q 039177 124 KTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCVDG--KTCSLILSSVCEQRDLSSDELLGFVQEMKKLG 201 (453)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g 201 (453)
+-....|+++.|+..++.+.. ..|+. .....+.++|...|+. +.|...++. .
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~--------------------~~p~~~~e~~~~l~r~yi~~g~~--~~al~~~~~----~ 60 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKP--------------------SSPERDVERDVFLYRAYLAQRKY--GVVLDEIKP----S 60 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCC--------------------CSHHHHHHHHHHHHHHHHHTTCH--HHHHHHSCT----T
T ss_pred HHHHHHHHHHHHHHHHHhccc--------------------CCchhhHHHHHHHHHHHHHCCCH--HHHHHHhcc----c
Confidence 444556777777776655332 23443 3556678899999998 888875533 2
Q ss_pred CCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 039177 202 FCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKP-DIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYN 280 (453)
Q Consensus 202 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 280 (453)
-+|+..++..+...+...++.++|++.++++...+..| +...+..+...+...|++++|++.+++ ..+...+.
T Consensus 61 ~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~ 134 (291)
T 3mkr_A 61 SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMA 134 (291)
T ss_dssp SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHH
T ss_pred CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHH
Confidence 35677889999999999999999999999998876545 556667777899999999999999987 46788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 039177 281 VYINGLCKQNNVEAGIKMIACMEELGSKPDVITY---NTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLA 357 (453)
Q Consensus 281 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 357 (453)
.+...|.+.|++++|.+.|+.+.+.. |+.... ..++..+...|++++|..+|+++.+.... +...++.+..+|.
T Consensus 135 ~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~-~~~~~~~la~~~~ 211 (291)
T 3mkr_A 135 MTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP-TLLLLNGQAACHM 211 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 99999999999999999999999864 554321 23344555669999999999999998544 8889999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHH-HHHHHHHHhhCCCCCCHHHHH
Q 039177 358 SKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRK-ALELLKQMADKDVSPGARVWE 420 (453)
Q Consensus 358 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~~~p~~~~~~ 420 (453)
+.|++++|...|++..+.. +-+..++..++..+...|+.++ +.++++++. .+.|+.....
T Consensus 212 ~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~--~~~P~~~~~~ 272 (291)
T 3mkr_A 212 AQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLK--DAHRSHPFIK 272 (291)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH--HHCTTCHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH--HhCCCChHHH
Confidence 9999999999999998875 4467788889999999999876 578999988 4467655443
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=9e-17 Score=146.86 Aligned_cols=239 Identities=14% Similarity=0.158 Sum_probs=62.2
Q ss_pred hcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCccChHh
Q 039177 92 ENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCVDGKT 171 (453)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 171 (453)
+.|++++|.+.++++. .| .+|..|..++.+.|++++|++.|.+ .+|..+
T Consensus 15 ~~~~ld~A~~fae~~~-----~~--~vWs~La~A~l~~g~~~eAIdsfik------------------------a~D~~~ 63 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-----EP--AVWSQLAKAQLQKGMVKEAIDSYIK------------------------ADDPSS 63 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-----Ch--HHHHHHHHHHHHcCCHHHHHHHHHc------------------------CCCHHH
Confidence 3455666666666652 11 2666666666666666666666644 134445
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 039177 172 CSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGV 251 (453)
Q Consensus 172 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 251 (453)
|..++.++...|++ +++...++...+. .++..+.+.++.+|.+.|+++++.++++ .|+..+|..+...|
T Consensus 64 y~~V~~~ae~~g~~--EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~ 132 (449)
T 1b89_A 64 YMEVVQAANTSGNW--EELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRC 132 (449)
T ss_dssp -------------------------------------------------CHHHHTTTTT-------CC------------
T ss_pred HHHHHHHHHhCCCH--HHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHH
Confidence 55555555555555 5555544444332 2334445555555555555555554442 23444555555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 039177 252 IVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLR 331 (453)
Q Consensus 252 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 331 (453)
...|.+++|...|..+ ..|..++.++.+.|++++|.+.++.+ .++.+|..++.+|...|+++.|.
T Consensus 133 ~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~ 197 (449)
T 1b89_A 133 YDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQ 197 (449)
T ss_dssp ----CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHH
Confidence 5555555555555543 34555555555555555555555554 14455555555555555555553
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 039177 332 ELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQ 393 (453)
Q Consensus 332 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 393 (453)
.....+. .++.-...++..|.+.|++++|..+++...... .-...+|+.|...|++
T Consensus 198 ~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 198 MCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp HTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred HHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHh
Confidence 3332211 122223345555555555555555555554333 3334444444444443
No 29
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.71 E-value=1.5e-12 Score=125.32 Aligned_cols=337 Identities=10% Similarity=-0.016 Sum_probs=272.5
Q ss_pred CChhhHHHHHHHHHh----cCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHhhcccCC---
Q 039177 78 PPPEAYHFVIKTLAE----NSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYAD----AHRFQDSVNLFYKIPKFR--- 146 (453)
Q Consensus 78 p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~--- 146 (453)
-++..+..+...+.. .++++.|...|+...+. | +...+..|...|.. .+++++|...|++..+.+
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~ 112 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-G---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQ 112 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 467777888888888 89999999999999876 3 56688889999998 899999999999876554
Q ss_pred ---------------CCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHh----cCCCChHHHHHHHHHHHHcCCCcChh
Q 039177 147 ---------------INRVGFAIEILNCMINDGFCVDGKTCSLILSSVCE----QRDLSSDELLGFVQEMKKLGFCFGMV 207 (453)
Q Consensus 147 ---------------~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~~~a~~~~~~~~~~g~~~~~~ 207 (453)
.+++++|+..|+.....| +...+..+...|.. .++. ++|.+.|+...+.| +..
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~--~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDY--VMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH--HHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH--HHHHHHHHHHHHCC---CHH
Confidence 468999999999998876 55667777777776 5666 99999999998875 678
Q ss_pred hHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhH
Q 039177 208 DYTNVIRSLVK----KEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIV----QEDYVKAEELFDELLVLGLVPDVYTY 279 (453)
Q Consensus 208 ~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~ 279 (453)
.+..|...|.. .+++++|++.|++..+.| +..++..+...|.. .+++++|..+|+...+.| +...+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 88899999998 899999999999998865 56778888888886 789999999999998864 45667
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCcCHHHHH
Q 039177 280 NVYINGLCK----QNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKV-----RELNRLRELVKEMKWKGIVLNLQTYS 350 (453)
Q Consensus 280 ~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~p~~~~~~ 350 (453)
..+...|.. .++.++|...|+...+.| +...+..+...|... +++++|...|+...+.+ +...+.
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 332 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQA 332 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHH
Confidence 777777877 899999999999998764 566778888888887 89999999999999875 566788
Q ss_pred HHHHHHHhcC---CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----CCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 039177 351 IMIDGLASKG---DIIEACGLLEEALNKGLCTQSSMFDETICGLCQ----RGLVRKALELLKQMADKDVSPGARVWEALL 423 (453)
Q Consensus 351 ~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 423 (453)
.+...|...| +.++|.+.|++..+.| +...+..+...|.. .+++++|..+|++..+.| +...+..|-
T Consensus 333 ~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg 406 (490)
T 2xm6_A 333 NLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLG 406 (490)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 8888888767 7899999999998875 56778888888888 899999999999998876 344444443
Q ss_pred hchh------cchhhHHHHHHHHHHhh
Q 039177 424 LSSV------SKLDFVNTSFIRLVDQI 444 (453)
Q Consensus 424 ~a~~------~~~~~~~~~~~~~~~~~ 444 (453)
..+. +..+.+...+.+..+..
T Consensus 407 ~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 407 EIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 3332 34445555555555544
No 30
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.69 E-value=2.7e-13 Score=131.89 Aligned_cols=218 Identities=11% Similarity=0.032 Sum_probs=153.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 039177 224 DALGILNQMKSDGIKPDIVCYTMVLNGVIV-------QEDYV-------KAEELFDELLVLGLVPDVYTYNVYINGLCKQ 289 (453)
Q Consensus 224 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-------~g~~~-------~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 289 (453)
.+..+|++.....+ -+...|..+...+.+ .|+++ +|..+|++..+.-.+.+...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 45556666665422 256677777777665 68876 8899998887632234578888889999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH-HHhcCCHHHHH
Q 039177 290 NNVEAGIKMIACMEELGSKPD-V-ITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDG-LASKGDIIEAC 366 (453)
Q Consensus 290 ~~~~~a~~~~~~m~~~~~~p~-~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~ 366 (453)
|++++|..+|+.+.+. .|+ . ..|..++..+.+.|++++|..+|+...+.... +...|...... +...|+.++|.
T Consensus 335 g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~ 411 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF 411 (530)
T ss_dssp TCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHH
Confidence 9999999999999884 354 2 47888888888899999999999998876332 33333322222 34689999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCC-CCCC--HHHHHHHHhchh--cchhhHHHHHHHHH
Q 039177 367 GLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADKD-VSPG--ARVWEALLLSSV--SKLDFVNTSFIRLV 441 (453)
Q Consensus 367 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~--~~~~~~ll~a~~--~~~~~~~~~~~~~~ 441 (453)
.+|+...+.. +.+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+.... +..+.+.....+..
T Consensus 412 ~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~ 490 (530)
T 2ooe_A 412 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 490 (530)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999888763 3356778888888889999999999999988753 3343 345655554433 33444555556666
Q ss_pred Hhhhc
Q 039177 442 DQILN 446 (453)
Q Consensus 442 ~~~~~ 446 (453)
+..+.
T Consensus 491 ~~~p~ 495 (530)
T 2ooe_A 491 TAFRE 495 (530)
T ss_dssp HHTHH
T ss_pred HHCch
Confidence 55553
No 31
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=2.1e-14 Score=125.45 Aligned_cols=240 Identities=17% Similarity=0.084 Sum_probs=199.3
Q ss_pred hHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CC----HH
Q 039177 169 GKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIK--PD----IV 242 (453)
Q Consensus 169 ~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--~~----~~ 242 (453)
...+..+...+...|++ ++|...|+...+.. .+...|..+...|...|++++|++.+++..+.... ++ ..
T Consensus 5 a~~~~~~g~~~~~~~~~--~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQF--DEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhccH--HHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 34677788889999999 99999999999887 77889999999999999999999999998874322 12 57
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 039177 243 CYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALC 322 (453)
Q Consensus 243 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 322 (453)
+|..+...+...|++++|...|++..+.. |+. ..+.+.|++++|...++.+..... .+...+..+...+.
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHH
Confidence 88899999999999999999999998853 442 456778889999999999988531 24567888999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHH
Q 039177 323 KVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALE 402 (453)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 402 (453)
..|++++|...++.+.+.... +..++..+..+|...|++++|...|++..+.. +.+...+..+...|.+.|++++|..
T Consensus 151 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999999987655 78899999999999999999999999998875 4457788889999999999999999
Q ss_pred HHHHHhhCC----CCCCHHHHHHHHh
Q 039177 403 LLKQMADKD----VSPGARVWEALLL 424 (453)
Q Consensus 403 ~~~~m~~~~----~~p~~~~~~~ll~ 424 (453)
.+++..+.. ..|+.......+.
T Consensus 229 ~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 229 TLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHhChhhcCCCchHHHHHHHH
Confidence 999987532 2266555444443
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.67 E-value=1e-15 Score=139.89 Aligned_cols=267 Identities=8% Similarity=0.022 Sum_probs=133.5
Q ss_pred CChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHH
Q 039177 78 PPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEIL 157 (453)
Q Consensus 78 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~ 157 (453)
+++.+|..+..++.+.|++++|.+.|.+. +|...|..++..+...|++++|+..+....+
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark------------- 89 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARK------------- 89 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-------------
Confidence 45679999999999999999999999642 4666889999999999999999987765332
Q ss_pred HHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039177 158 NCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGI 237 (453)
Q Consensus 158 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 237 (453)
..+++.+.+.++.+|.+.|++ .++.++++ .|+..+|+.+...|...|.+++|..+|..+
T Consensus 90 -------~~~~~~i~~~Li~~Y~Klg~l--~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 90 -------KARESYVETELIFALAKTNRL--AELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp --------------------------CH--HHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred -------hCccchhHHHHHHHHHHhCCH--HHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 135677888999999999998 78777663 367789999999999999999999999977
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 039177 238 KPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTL 317 (453)
Q Consensus 238 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 317 (453)
..|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHH
Confidence 36899999999999999999999988 378999999999999999999966554422 344445678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------ChhhHHHHHH
Q 039177 318 LQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASK--GDIIEACGLLEEALNKGLCT------QSSMFDETIC 389 (453)
Q Consensus 318 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~------~~~~~~~li~ 389 (453)
+..|.+.|.+++|..+++...... .-....|+-|...|++- +++.+.+++|..- -++.+ +...|..++-
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHH
Confidence 899999999999999999988776 33677888888888874 3455555555311 12222 4567888888
Q ss_pred HHHhCCCHHHHHHH
Q 039177 390 GLCQRGLVRKALEL 403 (453)
Q Consensus 390 ~~~~~g~~~~A~~~ 403 (453)
.|.+-++++.|...
T Consensus 291 ly~~~~e~d~A~~t 304 (449)
T 1b89_A 291 LYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHTTCHHHHHHH
T ss_pred HHHhhchHHHHHHH
Confidence 99999999988763
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.67 E-value=1.8e-14 Score=122.69 Aligned_cols=200 Identities=12% Similarity=-0.031 Sum_probs=144.2
Q ss_pred CcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 039177 203 CFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVY 282 (453)
Q Consensus 203 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 282 (453)
+++...+..+...+.+.|++++|+..|++..+..+. +...+..+..++.+.|++++|+..+++.++.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 456667778888888888888888888888776544 67777788888888888888888888887754 2356677777
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 039177 283 INGLCKQ-----------NNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSI 351 (453)
Q Consensus 283 i~~~~~~-----------~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 351 (453)
..++... |++++|...|+...+... -+...+..+..+|...|++++|+..|+...+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 7778888 888888888888887542 246678888888888888999988888888877 47888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHh
Q 039177 352 MIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMA 408 (453)
Q Consensus 352 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (453)
+..+|...|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..|++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 8888888899999988888888764 3456677778888888888888888887653
No 34
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.66 E-value=7.2e-14 Score=121.81 Aligned_cols=212 Identities=11% Similarity=-0.017 Sum_probs=167.9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 039177 206 MVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYING 285 (453)
Q Consensus 206 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 285 (453)
...|..+...|...|++++|++.|+++.+.... +..++..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 566788888888889999999998888776433 67788888888888999999999998887754 2466778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH
Q 039177 286 LCKQNNVEAGIKMIACMEELGSKP-DVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIE 364 (453)
Q Consensus 286 ~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 364 (453)
|...|++++|.+.++.+.+.+..| +...+..+...|.+.|++++|...++.+.+.... +...+..+...|...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 889999999999998888733345 3457788888889999999999999988887544 67788888899999999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 039177 365 ACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADKDVSPGARVWEALL 423 (453)
Q Consensus 365 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 423 (453)
|...++++.+.. ..+...+..+...+...|++++|.++++++.+. .|+...+..++
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l 249 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHHHHH
Confidence 999999887754 345667778888888999999999999998753 56555444443
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=5.9e-13 Score=127.44 Aligned_cols=318 Identities=10% Similarity=-0.073 Sum_probs=169.4
Q ss_pred CCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHc-------CCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCC
Q 039177 75 NCEPPPEAYHFVIKTLAENSQFCDISSVLDHIEKR-------ENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRI 147 (453)
Q Consensus 75 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 147 (453)
+.......|+.+...+...|++++|++.|++..+. ...+....+|+.+..+|...|++++|...|++..
T Consensus 46 ~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~---- 121 (472)
T 4g1t_A 46 NREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVK---- 121 (472)
T ss_dssp C---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHH----
T ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH----
Confidence 34445667899999999999999999999887542 1123456789999999999999999999988743
Q ss_pred CcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHH---HHhcCChhH
Q 039177 148 NRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRS---LVKKEKVFD 224 (453)
Q Consensus 148 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~---~~~~g~~~~ 224 (453)
++..........-...++.....++...+.-..++|...|++..+.. +-+...+..+..+ +...++.++
T Consensus 122 -------~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~ 193 (472)
T 4g1t_A 122 -------HVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQN 193 (472)
T ss_dssp -------HHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCC
T ss_pred -------HHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHH
Confidence 22222111100112234444444444433322256666666665543 2223333333333 233455566
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 039177 225 ALGILNQMKSDGIKPDIVCYTMVLNGVIV----QEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIA 300 (453)
Q Consensus 225 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 300 (453)
|++.+++..+..+. +..++..+...+.. .|++++|.+++++..... +.+..++..+...|...|++++|...++
T Consensus 194 al~~~~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 271 (472)
T 4g1t_A 194 AIDPLRQAIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLK 271 (472)
T ss_dssp THHHHHHHHHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 66666665554322 34444444433333 245556666666655543 2344555666666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 039177 301 CMEELGSKPDVITYNTLLQALCKV-------------------RELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGD 361 (453)
Q Consensus 301 ~m~~~~~~p~~~~~~~li~~~~~~-------------------~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 361 (453)
...+... -+..++..+...|... +.++.|...+....+.... +..++..+...|...|+
T Consensus 272 ~al~~~p-~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 272 KALEYIP-NNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHST-TCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTC
T ss_pred HHHHhCC-ChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhcc
Confidence 6665321 1333444444433221 2234555555555554332 33455566666666666
Q ss_pred HHHHHHHHHHHHHCCCCCChh--hHHHHHH-HHHhCCCHHHHHHHHHHHh
Q 039177 362 IIEACGLLEEALNKGLCTQSS--MFDETIC-GLCQRGLVRKALELLKQMA 408 (453)
Q Consensus 362 ~~~A~~~~~~m~~~~~~~~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~ 408 (453)
+++|...|++..+....+... .+..+.. .+.+.|++++|+..|++..
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal 399 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV 399 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666666666666544322211 1111111 2235566666666666654
No 36
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.65 E-value=1.1e-13 Score=118.04 Aligned_cols=214 Identities=12% Similarity=-0.021 Sum_probs=165.9
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 039177 205 GMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYIN 284 (453)
Q Consensus 205 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 284 (453)
+...|..+...+...|++++|++.|+++.+.... +...+..+...+...|++++|...+++..+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 4566778888888888888888888888775433 57778888888888888888888888887754 345677788888
Q ss_pred HHHhc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH
Q 039177 285 GLCKQ-NNVEAGIKMIACMEELGSKPD-VITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDI 362 (453)
Q Consensus 285 ~~~~~-~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 362 (453)
.|... |++++|...++.+.+.+..|+ ...+..+...|...|++++|...++.+.+.... +...+..+...|...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence 88888 899999999888887333343 467788888888999999999999888876544 677888888889999999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 039177 363 IEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADKDVSPGARVWEALL 423 (453)
Q Consensus 363 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 423 (453)
++|...++++.+.....+...+..+...+...|+.++|..+++.+.+ ..|+......++
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l 222 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA--NFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHh
Confidence 99999998887764214566677777788888999999988888874 356655555444
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.64 E-value=3.5e-14 Score=120.84 Aligned_cols=201 Identities=9% Similarity=-0.079 Sum_probs=164.5
Q ss_pred ccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 039177 166 CVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYT 245 (453)
Q Consensus 166 ~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 245 (453)
+++...+..+...+...|+. ++|...|+...+.. +.+...+..+...+.+.|++++|+..|++..+..+. +...+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~ 77 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRY--DAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYM 77 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCH--HHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHH
Confidence 45777888899999999999 99999999998875 557788999999999999999999999999987544 778899
Q ss_pred HHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 039177 246 MVLNGVIVQ-----------EDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITY 314 (453)
Q Consensus 246 ~ll~~~~~~-----------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 314 (453)
.+..++... |++++|+..|++.++.. +.+...+..+..++...|++++|...|++..+.. .+...+
T Consensus 78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~ 154 (217)
T 2pl2_A 78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIR 154 (217)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHH
Confidence 999999999 99999999999998864 2457788889999999999999999999999877 688899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 315 NTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALN 374 (453)
Q Consensus 315 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 374 (453)
..+..+|...|++++|...|+...+..+. +...+..+...+...|++++|+..|++...
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 99999999999999999999999988655 788899999999999999999999987643
No 38
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.63 E-value=1.1e-11 Score=120.45 Aligned_cols=341 Identities=11% Similarity=0.038 Sum_probs=232.7
Q ss_pred chHHHHHHHhhhcCCCCChhhHHHHHHHH-HhcCCcchHHH----HHHHHHHcCCCC-CCHHHHHHHHHHHHh-------
Q 039177 62 HILSSLLHSFSIYNCEPPPEAYHFVIKTL-AENSQFCDISS----VLDHIEKRENFE-TPEFIFIDLIKTYAD------- 128 (453)
Q Consensus 62 ~~~~~ll~~~~~~~~~p~~~~~~~ll~~~-~~~~~~~~a~~----~~~~~~~~~~~~-~~~~~~~~li~~~~~------- 128 (453)
+.+..+++.+... .|+...|...+... ...|+++.|.+ +|+.....-|.. .+..+|...+....+
T Consensus 63 ~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~ 140 (530)
T 2ooe_A 63 DKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSY 140 (530)
T ss_dssp HHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSST
T ss_pred HHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccH
Confidence 3344444444332 35666666665433 34566766654 666665543433 356677777776654
Q ss_pred --cCChhHHHHHHhhcccCCCCc------------------------------HHHHHHHHHHHH------HCC---Ccc
Q 039177 129 --AHRFQDSVNLFYKIPKFRINR------------------------------VGFAIEILNCMI------NDG---FCV 167 (453)
Q Consensus 129 --~g~~~~A~~~~~~~~~~~~~~------------------------------~~~a~~~~~~m~------~~~---~~p 167 (453)
.|+++.|+.+|++..+..... +..|..++..+. ... ++|
T Consensus 141 ~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 141 AENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp THHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred HHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 677888888888766532211 222333332211 111 233
Q ss_pred C--------hHhHHHHHHHHHhc----CCC--ChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHh-------cCChh---
Q 039177 168 D--------GKTCSLILSSVCEQ----RDL--SSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVK-------KEKVF--- 223 (453)
Q Consensus 168 ~--------~~~~~~ll~~~~~~----~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-------~g~~~--- 223 (453)
+ ...|...+...... ++. ....+..+|++..... +.+...|..++..+.+ .|+++
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 3 13444444332221 121 0136677888877763 4567888888888876 79987
Q ss_pred ----HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHH
Q 039177 224 ----DALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPD--VYTYNVYINGLCKQNNVEAGIK 297 (453)
Q Consensus 224 ----~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~~~~~~a~~ 297 (453)
+|..+|++..+.-.+-+...|..++..+.+.|++++|..+|+++++. .|+ ...|..++..+.+.|++++|.+
T Consensus 300 ~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~ 377 (530)
T 2ooe_A 300 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRM 377 (530)
T ss_dssp HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHH
Confidence 89999999986322336889999999999999999999999999985 354 2578889998999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039177 298 MIACMEELGSKPDVITYNTLLQA-LCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKG 376 (453)
Q Consensus 298 ~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 376 (453)
+|+...+... .+...|...... +...|+.++|..+|+...+.... +...|..++..+.+.|+.++|..+|++....+
T Consensus 378 ~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 378 IFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 9999988532 123333332222 34689999999999999887543 68899999999999999999999999998874
Q ss_pred C-CCC--hhhHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 039177 377 L-CTQ--SSMFDETICGLCQRGLVRKALELLKQMAD 409 (453)
Q Consensus 377 ~-~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (453)
. .|. ...|...+......|+.+.+..++.++.+
T Consensus 456 ~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 456 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp CSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 222 33787888888899999999999999875
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=2.2e-13 Score=118.93 Aligned_cols=226 Identities=9% Similarity=0.007 Sum_probs=191.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHH
Q 039177 116 EFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQ 195 (453)
Q Consensus 116 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~ 195 (453)
...+..+...+...|++++|+..|++ ..... .+..++..+..++...|+. ++|...++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~------------------a~~~~--~~~~~~~~~~~~~~~~~~~--~~A~~~~~ 62 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNK------------------AWELH--KDITYLNNRAAAEYEKGEY--ETAISTLN 62 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH------------------HHHHS--CCTHHHHHHHHHHHHTTCH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHH------------------HHHhh--ccHHHHHHHHHHHHHcccH--HHHHHHHH
Confidence 45788888999999999999998887 33333 6778899999999999999 99999999
Q ss_pred HHHHcCC--CcC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 196 EMKKLGF--CFG----MVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLV 269 (453)
Q Consensus 196 ~~~~~g~--~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 269 (453)
...+... .++ ..+|..+...|.+.|++++|++.|++..+.. |+. ..+...|++++|...++.+..
T Consensus 63 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~ 133 (258)
T 3uq3_A 63 DAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAY 133 (258)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHH
Confidence 9887541 112 5789999999999999999999999998853 342 356677899999999999988
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 039177 270 LGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTY 349 (453)
Q Consensus 270 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 349 (453)
.. +.+...+..+...+...|++++|...|+...+... .+..++..+...|.+.|++++|...++...+.... +...|
T Consensus 134 ~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~ 210 (258)
T 3uq3_A 134 VN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAY 210 (258)
T ss_dssp CC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred cC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHH
Confidence 54 23566788899999999999999999999988643 36788999999999999999999999999987654 68899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 350 SIMIDGLASKGDIIEACGLLEEALNK 375 (453)
Q Consensus 350 ~~li~~~~~~g~~~~A~~~~~~m~~~ 375 (453)
..+..+|.+.|++++|...+++..+.
T Consensus 211 ~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 211 IRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999999999998765
No 40
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.60 E-value=3.9e-12 Score=112.27 Aligned_cols=224 Identities=9% Similarity=-0.062 Sum_probs=195.9
Q ss_pred ChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHH
Q 039177 168 DGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVK----KEKVFDALGILNQMKSDGIKPDIVC 243 (453)
Q Consensus 168 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~ 243 (453)
+..++..+...+...++. ++|.+.|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +...
T Consensus 5 ~~~a~~~lg~~~~~~~~~--~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDF--TQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred ChHHHHHHHHHHHhCCCH--HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 556677788888889988 99999999998843 56788889999999 999999999999999875 7788
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 039177 244 YTMVLNGVIV----QEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCK----QNNVEAGIKMIACMEELGSKPDVITYN 315 (453)
Q Consensus 244 ~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~ 315 (453)
+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|+...+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 8889999999 999999999999999865 67888889999999 999999999999999865 667788
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 039177 316 TLLQALCK----VRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLAS----KGDIIEACGLLEEALNKGLCTQSSMFDET 387 (453)
Q Consensus 316 ~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 387 (453)
.+...|.. .+++++|...|+...+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 88888888 999999999999998875 56788889999999 999999999999998875 25667778
Q ss_pred HHHHHh----CCCHHHHHHHHHHHhhCC
Q 039177 388 ICGLCQ----RGLVRKALELLKQMADKD 411 (453)
Q Consensus 388 i~~~~~----~g~~~~A~~~~~~m~~~~ 411 (453)
...|.+ .+++++|.++|++..+.|
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 888888 999999999999988654
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.60 E-value=5.3e-13 Score=117.66 Aligned_cols=246 Identities=9% Similarity=-0.092 Sum_probs=194.0
Q ss_pred hHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHH
Q 039177 169 GKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPD--IVCYTM 246 (453)
Q Consensus 169 ~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~ 246 (453)
...+......+...|++ ++|...|++..+.. +.+...+..+...|...|++++|++.+++..+....++ ..+|..
T Consensus 3 ~~~~~~~a~~~~~~~~~--~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 79 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNY--AEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEY 79 (272)
T ss_dssp --CHHHHHHHHHTTTCH--HHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCH--HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHH
Confidence 34456667778899998 99999999998875 34566899999999999999999999999988432222 334888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 039177 247 VLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRE 326 (453)
Q Consensus 247 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 326 (453)
+...+...|++++|+..|+...+.. +.+..++..+...|...|++++|...|+...+.. ..+...+..+...+...++
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998864 3456788999999999999999999999998863 2356677777734444569
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------hhhHHHHHHHHHhCCC
Q 039177 327 LNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGD---IIEACGLLEEALNKG-LCTQ------SSMFDETICGLCQRGL 396 (453)
Q Consensus 327 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~-~~~~------~~~~~~li~~~~~~g~ 396 (453)
+++|...|+.+.+.... +...+..+..++...|+ .++|...+++..+.. -.|+ ...|..+...|...|+
T Consensus 158 ~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (272)
T 3u4t_A 158 YVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD 236 (272)
T ss_dssp HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC
Confidence 99999999999987554 57788888888888888 888999998887652 1233 2467778889999999
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHH
Q 039177 397 VRKALELLKQMADKDVSPGARVWEAL 422 (453)
Q Consensus 397 ~~~A~~~~~~m~~~~~~p~~~~~~~l 422 (453)
+++|.+.|++..+ +.|+...-...
T Consensus 237 ~~~A~~~~~~al~--~~p~~~~a~~~ 260 (272)
T 3u4t_A 237 KVKADAAWKNILA--LDPTNKKAIDG 260 (272)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred HHHHHHHHHHHHh--cCccHHHHHHH
Confidence 9999999999985 45654444333
No 42
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.60 E-value=1.2e-13 Score=119.58 Aligned_cols=200 Identities=14% Similarity=0.044 Sum_probs=135.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 039177 205 GMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYIN 284 (453)
Q Consensus 205 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 284 (453)
....|..+...+...|++++|...|+++.+.... +...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4455667777777888888888888887765433 66777777778888888888888888777653 235667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH
Q 039177 285 GLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIE 364 (453)
Q Consensus 285 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 364 (453)
.|...|++++|.+.++.+.+... .+...+..+...|.+.|++++|...++.+.+.... +...+..+...|...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHH
Confidence 78888888888888888776542 35667777788888888888888888887776443 66777888888888888888
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 039177 365 ACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMAD 409 (453)
Q Consensus 365 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (453)
|...|+++.+.. ..+..++..+...|...|++++|...++++.+
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 888888877654 34566777778888888888888888888774
No 43
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.59 E-value=1.2e-11 Score=126.26 Aligned_cols=296 Identities=13% Similarity=0.157 Sum_probs=158.9
Q ss_pred CChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC----------
Q 039177 78 PPPEAYHFVIKTLAENSQFCDISSVLDHIEKREN-FETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFR---------- 146 (453)
Q Consensus 78 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---------- 146 (453)
-+|.-....+++|...|.+.+|+++++.+..... +..+...-+.++.+..+. +..+..+..++.....
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d~~eIA~Iai~ 1061 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAPDIANIAIS 1061 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhccHHHHHHHHHh
Confidence 4555567778888899999999999999885421 234555666666665555 3344444333332221
Q ss_pred CCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHH
Q 039177 147 INRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDAL 226 (453)
Q Consensus 147 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 226 (453)
.+.+++|..+|++.. -.....+.++. ..+++ ++|.++.++. -+..+|..+..++.+.|++++|+
T Consensus 1062 lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nl--drAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNL--DRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred CCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhH--HHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 455666666655531 01111122221 33444 5555554432 12445555556666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039177 227 GILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELG 306 (453)
Q Consensus 227 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 306 (453)
+.|.+. -|...|..++.+|.+.|++++|.+.+....+.. ++....+.++.+|++.+++++.... .+
T Consensus 1126 dsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~-- 1191 (1630)
T 1xi4_A 1126 DSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN-- 1191 (1630)
T ss_pred HHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh--
Confidence 555443 145555555555666666666665555544432 2222223355555555555532222 11
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----------
Q 039177 307 SKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNK----------- 375 (453)
Q Consensus 307 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------- 375 (453)
.++...|..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++....
T Consensus 1192 -~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acv 1261 (1630)
T 1xi4_A 1192 -GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACV 1261 (1630)
T ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 133344444555555555555555555542 24555555555555555555554433111
Q ss_pred -------------CCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCH
Q 039177 376 -------------GLCTQSSMFDETICGLCQRGLVRKALELLKQMADKDVSPGA 416 (453)
Q Consensus 376 -------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 416 (453)
++..+...+..++..|.+.|.+++|+.+++... |+.|..
T Consensus 1262 e~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL--~LeraH 1313 (1630)
T 1xi4_A 1262 DGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAAL--GLERAH 1313 (1630)
T ss_pred hhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh--ccChhH
Confidence 123345567788889999999999999998877 444443
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=1.4e-12 Score=113.48 Aligned_cols=202 Identities=9% Similarity=-0.103 Sum_probs=175.3
Q ss_pred hHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 039177 169 GKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVL 248 (453)
Q Consensus 169 ~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll 248 (453)
...+..+...+...|++ ++|...++++.+.. +.+...+..+...|...|++++|.+.|+++.+.... +...+..+.
T Consensus 37 ~~~~~~~a~~~~~~~~~--~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la 112 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNT--EQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHHTTCT--GGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCh--HHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHH
Confidence 45677888889999999 99999999988875 456788999999999999999999999999886543 778899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 039177 249 NGVIVQEDYVKAEELFDELLVLGLVP-DVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVREL 327 (453)
Q Consensus 249 ~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 327 (453)
..+...|++++|.++++++.+.+..| +...+..+...|...|++++|...++...+... .+...+..+...|...|++
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCH
Confidence 99999999999999999998733334 566788888999999999999999999988642 3578899999999999999
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039177 328 NRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKG 376 (453)
Q Consensus 328 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 376 (453)
++|...++.+.+.... +...+..+...|...|+.++|.+.++++.+..
T Consensus 192 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 192 VPARQYYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHHTTSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999999999887554 77888999999999999999999999998764
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.58 E-value=1e-13 Score=122.44 Aligned_cols=245 Identities=9% Similarity=-0.093 Sum_probs=165.3
Q ss_pred CcHHHHHHHHHHHHHCCC---ccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhH
Q 039177 148 NRVGFAIEILNCMINDGF---CVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFD 224 (453)
Q Consensus 148 ~~~~~a~~~~~~m~~~~~---~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 224 (453)
+++++|+..|+.+..... +.+..++..+...+...|+. ++|...|+++.+.. +.+..+|..+...|...|++++
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLR--ALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccH--HHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 455556666666665421 12455777788888888888 88888888887765 3457778888888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 225 ALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEE 304 (453)
Q Consensus 225 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 304 (453)
|++.|++..+.... +..++..+..++...|++++|...|+++.+.. |+.......+..+...|++++|...++....
T Consensus 96 A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 88888888775433 56777888888888888888888888887743 4444444555556677888888888876665
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 039177 305 LGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVL---NLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQS 381 (453)
Q Consensus 305 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 381 (453)
.. .++...+ .++..+...++.++|...+....+..... +..++..+...|.+.|++++|...|++..+.+ |+.
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~ 248 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN 248 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh
Confidence 43 2233333 36666777777788888887776553211 14677777888888888888888888887653 322
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHH
Q 039177 382 SMFDETICGLCQRGLVRKALELL 404 (453)
Q Consensus 382 ~~~~~li~~~~~~g~~~~A~~~~ 404 (453)
+.....++...|++++|++.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 222344666677777776655
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.57 E-value=7.9e-13 Score=121.87 Aligned_cols=242 Identities=9% Similarity=0.022 Sum_probs=202.6
Q ss_pred hHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCCHHHHHHH
Q 039177 169 GKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEK-VFDALGILNQMKSDGIKPDIVCYTMV 247 (453)
Q Consensus 169 ~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~l 247 (453)
...|..+...+...|+. ++|+..++.+.+.. +-+..+|+.+...+...|+ +++|+..|++..+.... +...|..+
T Consensus 97 ~~a~~~lg~~~~~~g~~--~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~ 172 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERS--ERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHTCCC--HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCh--HHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHH
Confidence 34677788888999999 99999999999876 4567889999999999997 99999999999987665 88899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCC
Q 039177 248 LNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCK-VRE 326 (453)
Q Consensus 248 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~~~ 326 (453)
..++...|++++|+..|+++++.. +-+...|..+..++.+.|++++|+..|+.+++.... +...|+.+..++.+ .|.
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999865 357888999999999999999999999999986532 67789999999999 666
Q ss_pred HHHH-----HHHHHHHHHCCCCcCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCC----
Q 039177 327 LNRL-----RELVKEMKWKGIVLNLQTYSIMIDGLASKG--DIIEACGLLEEALNKGLCTQSSMFDETICGLCQRG---- 395 (453)
Q Consensus 327 ~~~a-----~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---- 395 (453)
.++| +..++..++.... +...|..+...+...| ++++|.+.+.++ +. -..+...+..+...|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccc
Confidence 5777 5888888887665 7889999999999988 689999999988 33 2445667888888888874
Q ss_pred -----CHHHHHHHHHHH-hhCCCCCCHHHHHH
Q 039177 396 -----LVRKALELLKQM-ADKDVSPGARVWEA 421 (453)
Q Consensus 396 -----~~~~A~~~~~~m-~~~~~~p~~~~~~~ 421 (453)
..++|+++++++ . .+.|...-|..
T Consensus 328 ~~~~~~~~~A~~~~~~l~~--~~DP~r~~~w~ 357 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAK--EKDTIRKEYWR 357 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHH--TTCGGGHHHHH
T ss_pred cchHHHHHHHHHHHHHHHH--HhCchhHHHHH
Confidence 358999999998 5 35665444443
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=2.4e-12 Score=109.74 Aligned_cols=209 Identities=9% Similarity=-0.106 Sum_probs=177.6
Q ss_pred ChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 039177 168 DGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMV 247 (453)
Q Consensus 168 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 247 (453)
+...+..+...+...|+. ++|.+.++.+.+.. +.+...+..+...|...|++++|.+.++++.+.... +..++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~--~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l 82 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDY--RQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHH
Confidence 456788888899999999 99999999988865 456788999999999999999999999999886443 77889999
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 039177 248 LNGVIVQ-EDYVKAEELFDELLVLGLVP-DVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVR 325 (453)
Q Consensus 248 l~~~~~~-g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 325 (453)
...+... |++++|...++.+.+.+..| +...+..+...+...|++++|...++.+.+... .+...+..+...|.+.|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcC
Confidence 9999999 99999999999998833233 357788899999999999999999999988642 25788999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 039177 326 ELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSM 383 (453)
Q Consensus 326 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 383 (453)
++++|..+++.+.+.....+...+..+...+...|+.+.|..+++.+.+.. |+...
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~ 217 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF--PYSEE 217 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHH
Confidence 999999999999887552377788888899999999999999999987653 44443
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.56 E-value=1.5e-11 Score=108.46 Aligned_cols=225 Identities=10% Similarity=-0.035 Sum_probs=194.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHh----cCCCChHH
Q 039177 114 TPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCVDGKTCSLILSSVCE----QRDLSSDE 189 (453)
Q Consensus 114 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~~~ 189 (453)
-+...+..+...|...|++++|+..|++ ... .-+...+..+...+.. .++. ++
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~------------------a~~---~~~~~a~~~lg~~~~~g~~~~~~~--~~ 60 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEK------------------ACD---LKENSGCFNLGVLYYQGQGVEKNL--KK 60 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHH------------------HHH---TTCHHHHHHHHHHHHHTSSSCCCH--HH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHH------------------HHH---CCCHHHHHHHHHHHHcCCCcCCCH--HH
Confidence 3566788888899999999999988877 333 2245677778888888 8888 99
Q ss_pred HHHHHHHHHHcCCCcChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 039177 190 LLGFVQEMKKLGFCFGMVDYTNVIRSLVK----KEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIV----QEDYVKAE 261 (453)
Q Consensus 190 a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~ 261 (453)
|...|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +..++..+...|.. .+++++|+
T Consensus 61 A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~ 134 (273)
T 1ouv_A 61 AASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAV 134 (273)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHH
Confidence 999999999876 67889999999999 999999999999999875 77888999999999 99999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 039177 262 ELFDELLVLGLVPDVYTYNVYINGLCK----QNNVEAGIKMIACMEELGSKPDVITYNTLLQALCK----VRELNRLREL 333 (453)
Q Consensus 262 ~~~~~m~~~g~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~ 333 (453)
..|++..+.+ +...+..+...|.. .+++++|...|+...+.+ +...+..+...|.. .+++++|...
T Consensus 135 ~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~ 208 (273)
T 1ouv_A 135 EYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALAR 208 (273)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHH
T ss_pred HHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 9999999865 56777888888888 999999999999999864 56788889999999 9999999999
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 039177 334 VKEMKWKGIVLNLQTYSIMIDGLAS----KGDIIEACGLLEEALNKG 376 (453)
Q Consensus 334 ~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 376 (453)
|+...+.+ +...+..+...|.+ .+++++|...|++..+.+
T Consensus 209 ~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 209 YSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 99999885 36788889999998 999999999999998876
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.56 E-value=4.2e-13 Score=116.07 Aligned_cols=203 Identities=14% Similarity=0.086 Sum_probs=160.8
Q ss_pred cChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 039177 167 VDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTM 246 (453)
Q Consensus 167 p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 246 (453)
.....|..+...+...|++ ++|...|+++.+.. +.+...+..+...|...|++++|++.|+++.+.... +..++..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~--~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 96 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDY--EKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYG 96 (243)
T ss_dssp -----------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCH--HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHH
Confidence 3556777888888999999 99999999998864 456788999999999999999999999999876543 7788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 039177 247 VLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRE 326 (453)
Q Consensus 247 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 326 (453)
+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|...++.+.+... .+...+..+...|.+.|+
T Consensus 97 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 174 (243)
T 2q7f_A 97 AGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGM 174 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCC
Confidence 9999999999999999999998865 35677888899999999999999999999987542 367789999999999999
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039177 327 LNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKG 376 (453)
Q Consensus 327 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 376 (453)
+++|...++.+.+.... +..++..+..+|...|++++|...++++.+..
T Consensus 175 ~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 175 LDEALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 99999999999887544 68899999999999999999999999998864
No 50
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.56 E-value=8e-13 Score=116.53 Aligned_cols=164 Identities=9% Similarity=-0.037 Sum_probs=77.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 039177 209 YTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCK 288 (453)
Q Consensus 209 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 288 (453)
|..+...|...|++++|++.|++..+.... +..+|..+...|...|++++|...|++..+.. +.+...+..+...+..
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH
Confidence 444445555555555555555555443222 33444555555555555555555555444431 1223333333312222
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCcC------HHHHHHHHHHHHh
Q 039177 289 QNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRE---LNRLRELVKEMKWKG-IVLN------LQTYSIMIDGLAS 358 (453)
Q Consensus 289 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~-~~p~------~~~~~~li~~~~~ 358 (453)
.+++++|.+.|+...+... .+...+..+..++...|+ +++|...++...+.. ..|+ ..+|..+...|..
T Consensus 155 ~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp TTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 3355555555555554321 123444445555555554 555555555544431 1111 1345555556666
Q ss_pred cCCHHHHHHHHHHHHHC
Q 039177 359 KGDIIEACGLLEEALNK 375 (453)
Q Consensus 359 ~g~~~~A~~~~~~m~~~ 375 (453)
.|++++|...|++..+.
T Consensus 234 ~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 234 NRDKVKADAAWKNILAL 250 (272)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc
Confidence 66666666666666554
No 51
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.56 E-value=1.3e-11 Score=118.03 Aligned_cols=283 Identities=12% Similarity=-0.078 Sum_probs=206.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCcc-ChHhHHHHHHHHHhcCCCChHHHH
Q 039177 113 ETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCV-DGKTCSLILSSVCEQRDLSSDELL 191 (453)
Q Consensus 113 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~a~ 191 (453)
.....+||.|...|...|+.++|++.|++ |++++.........| ...+|+.+..+|...|+. ++|.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~k-----------Al~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~--~~A~ 114 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRK-----------AEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRL--SDVQ 114 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCH--HHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHH-----------HHHHHHhcCccccchHHHHHHHHHHHHHHHcCCh--HHHH
Confidence 34456899999999999999999999877 666665544322233 356889999999999999 9999
Q ss_pred HHHHHHHHcC-------CCcChhhHHHHHHHHHhc--CChhHHHHHHHHHHhCCCCCCHHHHHHHHHH---HHhcCCHHH
Q 039177 192 GFVQEMKKLG-------FCFGMVDYTNVIRSLVKK--EKVFDALGILNQMKSDGIKPDIVCYTMVLNG---VIVQEDYVK 259 (453)
Q Consensus 192 ~~~~~~~~~g-------~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~---~~~~g~~~~ 259 (453)
..+++..+.. ......++..+..++... +++++|++.|++..+..+. +...+..+..+ +...++.++
T Consensus 115 ~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~ 193 (472)
T 4g1t_A 115 IYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQN 193 (472)
T ss_dssp HHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHH
Confidence 9998876531 011345566666666654 4689999999999886543 55555555544 345677888
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039177 260 AEELFDELLVLGLVPDVYTYNVYINGLCK----QNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVK 335 (453)
Q Consensus 260 a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 335 (453)
|++.+++.++.. +.+..++..+...+.. .++.++|.+.++....... .+...+..+...|...|++++|...+.
T Consensus 194 al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~ 271 (472)
T 4g1t_A 194 AIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLK 271 (472)
T ss_dssp THHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 999999887754 2345556555555544 4677899999999887542 366789999999999999999999999
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCC
Q 039177 336 EMKWKGIVLNLQTYSIMIDGLASK-------------------GDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGL 396 (453)
Q Consensus 336 ~~~~~~~~p~~~~~~~li~~~~~~-------------------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 396 (453)
...+..+. +..++..+..+|... +..+.|...+++..+.+ ..+...+..+...|...|+
T Consensus 272 ~al~~~p~-~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 272 KALEYIPN-NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHSTT-CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTC
T ss_pred HHHHhCCC-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhcc
Confidence 99987655 677777777666432 34567888888887764 3455678888999999999
Q ss_pred HHHHHHHHHHHhhCCCC
Q 039177 397 VRKALELLKQMADKDVS 413 (453)
Q Consensus 397 ~~~A~~~~~~m~~~~~~ 413 (453)
+++|+..|++..+....
T Consensus 350 ~~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELT 366 (472)
T ss_dssp HHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 99999999999865443
No 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.55 E-value=3.1e-13 Score=119.32 Aligned_cols=225 Identities=10% Similarity=-0.125 Sum_probs=181.7
Q ss_pred cCCCChHHHHHHHHHHHHcCC---CcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 039177 182 QRDLSSDELLGFVQEMKKLGF---CFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYV 258 (453)
Q Consensus 182 ~~~~~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 258 (453)
.++. ++|...++++.+... +.+..+|..+...|...|++++|++.|+++.+.... +..+|..+...+...|+++
T Consensus 18 ~~~~--~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 18 TLQQ--EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CHHH--HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHH
T ss_pred cchH--HHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHH
Confidence 3455 899999999988632 224677999999999999999999999999987544 7889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039177 259 KAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMK 338 (453)
Q Consensus 259 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 338 (453)
+|...|++..+.. +.+...+..+...|.+.|++++|...|+.+.+.. |+.......+..+...|++++|...+....
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999998864 3467888999999999999999999999999854 555555556666678899999999998887
Q ss_pred HCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---ChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCC
Q 039177 339 WKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCT---QSSMFDETICGLCQRGLVRKALELLKQMADKDVSPG 415 (453)
Q Consensus 339 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 415 (453)
..... +...+ .++..+...++.++|...+++........ +...+..+...|.+.|++++|...|++..+ +.|+
T Consensus 172 ~~~~~-~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~ 247 (275)
T 1xnf_A 172 EKSDK-EQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVH 247 (275)
T ss_dssp HHSCC-CSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCT
T ss_pred hcCCc-chHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCch
Confidence 76432 33344 37777888899999999999886543111 146788889999999999999999999985 4564
Q ss_pred H
Q 039177 416 A 416 (453)
Q Consensus 416 ~ 416 (453)
.
T Consensus 248 ~ 248 (275)
T 1xnf_A 248 N 248 (275)
T ss_dssp T
T ss_pred h
Confidence 3
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.53 E-value=6.4e-12 Score=115.81 Aligned_cols=248 Identities=10% Similarity=0.042 Sum_probs=170.3
Q ss_pred hhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHhhcccCCCCcHHHHHHHHH
Q 039177 80 PEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHR-FQDSVNLFYKIPKFRINRVGFAIEILN 158 (453)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~a~~~~~ 158 (453)
...|..+...+.+.|++++|+..++.+.+.. +.+..+|+.+..+|...|+ +++|+..|+++..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~-------------- 160 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE-------------- 160 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHH--------------
Confidence 3456777777888888888888888888774 5677888888888888886 8888888777332
Q ss_pred HHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 039177 159 CMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIK 238 (453)
Q Consensus 159 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 238 (453)
.. +-+...|..+..++...|++ ++|+..|+.+.+.. +-+...|..+..++.+.|++++|+..|+++.+..+.
T Consensus 161 ----l~-P~~~~a~~~~g~~~~~~g~~--~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~ 232 (382)
T 2h6f_A 161 ----EQ-PKNYQVWHHRRVLVEWLRDP--SQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR 232 (382)
T ss_dssp ----HC-TTCHHHHHHHHHHHHHHTCC--TTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred ----HC-CCCHHHHHHHHHHHHHccCH--HHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 11 22556777888888888888 78888888887765 446677888888888888888888888888876554
Q ss_pred CCHHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHHCCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCC
Q 039177 239 PDIVCYTMVLNGVIV-QEDYVKA-----EELFDELLVLGLVPDVYTYNVYINGLCKQN--NVEAGIKMIACMEELGSKPD 310 (453)
Q Consensus 239 ~~~~~~~~ll~~~~~-~g~~~~a-----~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~ 310 (453)
+...|+.+..++.. .|..++| +..|++.++.. +-+...|+.+...+...| ++++|.+.+..+ +. ...+
T Consensus 233 -~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~ 308 (382)
T 2h6f_A 233 -NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSS 308 (382)
T ss_dssp -CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCC
T ss_pred -CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCC
Confidence 67778888878777 5554666 46666666643 234556666666677666 467777777666 32 2234
Q ss_pred HHHHHHHHHHHHhcC---------CHHHHHHHHHHH-HHCCCCcCHHHHHHHHHHH
Q 039177 311 VITYNTLLQALCKVR---------ELNRLRELVKEM-KWKGIVLNLQTYSIMIDGL 356 (453)
Q Consensus 311 ~~~~~~li~~~~~~~---------~~~~a~~~~~~~-~~~~~~p~~~~~~~li~~~ 356 (453)
...+..+...|.+.| .+++|..+++.+ .+.... ....|..+...+
T Consensus 309 ~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l 363 (382)
T 2h6f_A 309 PYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTI-RKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHH
Confidence 556667777776653 246777777776 444322 334454444443
No 54
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.51 E-value=1.2e-12 Score=122.78 Aligned_cols=239 Identities=12% Similarity=0.007 Sum_probs=140.8
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHH
Q 039177 82 AYHFVIKTLAENSQFCDISSVLDHIEKRENFETPE----FIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEIL 157 (453)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~ 157 (453)
.+..+...+...|++++|...|+.+.+.. +.+. .++..+...|...|++++|+..|++ ++++.
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~-----------al~~~ 116 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKH-----------DLTLA 116 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-----------HHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHH-----------HHHHH
Confidence 34456678889999999999999999873 3333 5788899999999999999999887 33333
Q ss_pred HHHHHCCCc-cChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHc----C-CCcChhhHHHHHHHHHhcCC----------
Q 039177 158 NCMINDGFC-VDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKL----G-FCFGMVDYTNVIRSLVKKEK---------- 221 (453)
Q Consensus 158 ~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~----g-~~~~~~~~~~li~~~~~~g~---------- 221 (453)
... +.. ....++..+...+...|++ ++|...+++..+. + .+....++..+...|...|+
T Consensus 117 ~~~---~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~ 191 (411)
T 4a1s_A 117 KSM---NDRLGEAKSSGNLGNTLKVMGRF--DEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKF 191 (411)
T ss_dssp HHT---TCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHc---cCchHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhh
Confidence 222 212 2345677777888888888 8888888776654 1 11224457777777777777
Q ss_pred -------hhHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHH
Q 039177 222 -------VFDALGILNQMKSD----GI-KPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLV-PD----VYTYNVYIN 284 (453)
Q Consensus 222 -------~~~a~~~~~~m~~~----~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~ 284 (453)
+++|++.+++..+. +. .....++..+...|...|++++|...+++..+.... .+ ...+..+..
T Consensus 192 ~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 271 (411)
T 4a1s_A 192 GDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGN 271 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 77777766665431 10 112235555555666666666666666655432100 01 113444455
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039177 285 GLCKQNNVEAGIKMIACMEELGSK-PD----VITYNTLLQALCKVRELNRLRELVKEMK 338 (453)
Q Consensus 285 ~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~ 338 (453)
.|...|++++|...+++..+.... .+ ..++..+...|...|++++|...++...
T Consensus 272 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 272 SHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555544331100 00 2334444444445555555555444443
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.50 E-value=1.8e-12 Score=121.28 Aligned_cols=302 Identities=11% Similarity=0.017 Sum_probs=218.0
Q ss_pred CChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHH
Q 039177 78 PPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETP----EFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFA 153 (453)
Q Consensus 78 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a 153 (453)
.....+......+...|++++|...|+.+.+.. +.+ ..++..+...|...|++++|...|++ +
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-----------a 73 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH-----------D 73 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------H
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-----------H
Confidence 344556677788899999999999999999873 333 35788899999999999999999887 3
Q ss_pred HHHHHHHHHCCCcc-ChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcC----CC-cChhhHHHHHHHHHhcCC------
Q 039177 154 IEILNCMINDGFCV-DGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLG----FC-FGMVDYTNVIRSLVKKEK------ 221 (453)
Q Consensus 154 ~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g----~~-~~~~~~~~li~~~~~~g~------ 221 (453)
+.+... .+..| ...++..+...+...|+. ++|...+++..+.. .. ....++..+...|...|+
T Consensus 74 l~~~~~---~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 148 (406)
T 3sf4_A 74 LTLART---IGDQLGEAKASGNLGNTLKVLGNF--DEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPG 148 (406)
T ss_dssp HHHHHH---TTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred HHHHHh---ccccHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccc
Confidence 333322 22222 245778888899999998 99999988876542 11 114478889999999999
Q ss_pred --------------hhHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----hh
Q 039177 222 --------------VFDALGILNQMKSD----GIK-PDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGL-VPD----VY 277 (453)
Q Consensus 222 --------------~~~a~~~~~~m~~~----~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~ 277 (453)
+++|++.+++..+. +.. ....++..+...|...|++++|...+++..+... .++ ..
T Consensus 149 ~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 228 (406)
T 3sf4_A 149 PQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERR 228 (406)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 99999998877542 111 1235677888899999999999999988765210 111 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cC----HH
Q 039177 278 TYNVYINGLCKQNNVEAGIKMIACMEELGSK-PD----VITYNTLLQALCKVRELNRLRELVKEMKWKGIV-LN----LQ 347 (453)
Q Consensus 278 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~ 347 (453)
++..+...|...|++++|...++...+.... .+ ..++..+...|...|++++|...++...+.... .+ ..
T Consensus 229 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 308 (406)
T 3sf4_A 229 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGR 308 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 6778888899999999999999887642110 11 457788889999999999999999887764111 11 55
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhCCCH
Q 039177 348 TYSIMIDGLASKGDIIEACGLLEEALNK----GLCT-QSSMFDETICGLCQRGLV 397 (453)
Q Consensus 348 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~ 397 (453)
++..+...|...|++++|...+++..+. +..+ ...++..+...+...|+.
T Consensus 309 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 309 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 7788888999999999999999887653 2111 133455556666666654
No 56
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.49 E-value=3.6e-11 Score=108.14 Aligned_cols=216 Identities=13% Similarity=0.036 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHcCCCcChhhHHHHHHHHH-------hcCCh-------hHHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 039177 188 DELLGFVQEMKKLGFCFGMVDYTNVIRSLV-------KKEKV-------FDALGILNQMKSD-GIKPDIVCYTMVLNGVI 252 (453)
Q Consensus 188 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~-------~~g~~-------~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~ 252 (453)
++|..+|++..... +.+...|..++..+. +.|++ ++|..+|++..+. .+ -+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 45666676666643 445666776666665 34665 7888888888773 32 25567778888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-hh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHH
Q 039177 253 VQEDYVKAEELFDELLVLGLVPD-VY-TYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALC-KVRELNR 329 (453)
Q Consensus 253 ~~g~~~~a~~~~~~m~~~g~~~~-~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~~~~~~ 329 (453)
+.|++++|..+|++.++. .|+ .. .|..+...+.+.|++++|..+|+...+... .+...|........ ..|++++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888774 343 22 677778888888888888888888877542 23344443333322 3688888
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--ChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 039177 330 LRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKG-LCT--QSSMFDETICGLCQRGLVRKALELLKQ 406 (453)
Q Consensus 330 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~ 406 (453)
|..+|+...+.... +...|..++..+.+.|++++|..+|++..... +.| ....|..++..+.+.|+.++|..++++
T Consensus 188 A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888776443 67778888888888888888888888887763 344 345677777777788888888888888
Q ss_pred Hhh
Q 039177 407 MAD 409 (453)
Q Consensus 407 m~~ 409 (453)
+.+
T Consensus 267 a~~ 269 (308)
T 2ond_A 267 RFT 269 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 774
No 57
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.48 E-value=1.5e-10 Score=118.35 Aligned_cols=308 Identities=13% Similarity=0.140 Sum_probs=182.1
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC---------CCcHHH
Q 039177 82 AYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFR---------INRVGF 152 (453)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~ 152 (453)
.-+.++.+..+. +.....+....+... ....+...+...|.+++|..+|++..... .+++++
T Consensus 1024 LqnlLi~tAIka-D~~Rv~eyI~kLd~~--------d~~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldr 1094 (1630)
T 1xi4_A 1024 LQNLLILTAIKA-DRTRVMEYINRLDNY--------DAPDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDR 1094 (1630)
T ss_pred HHHHHHHHHHHh-ChhhHHHHHHHhhhc--------cHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHH
Confidence 344455555555 445555555444311 13335566666777777777777754222 344444
Q ss_pred HHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 039177 153 AIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQM 232 (453)
Q Consensus 153 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 232 (453)
|.++.++. -+..+|..+..++...|++ ++|.+.|... -|...|..++..|.+.|++++|++.|...
T Consensus 1095 AiE~Aerv------n~p~vWsqLAKAql~~G~~--kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mA 1160 (1630)
T 1xi4_A 1095 AYEFAERC------NEPAVWSQLAKAQLQKGMV--KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMA 1160 (1630)
T ss_pred HHHHHHhc------CCHHHHHHHHHHHHhCCCH--HHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444432 2456677777777777777 7777776442 35666777777777777777777777766
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 039177 233 KSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVI 312 (453)
Q Consensus 233 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 312 (453)
++.. ++....+.++.+|++.+++++...+. + .++...|..+...|...|++++|..+|... .
T Consensus 1161 rk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ 1222 (1630)
T 1xi4_A 1161 RKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------S 1222 (1630)
T ss_pred Hhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------h
Confidence 6543 22222334666666666666433322 1 234455555666666666666666666653 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC------------------------CCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 039177 313 TYNTLLQALCKVRELNRLRELVKEMKWK------------------------GIVLNLQTYSIMIDGLASKGDIIEACGL 368 (453)
Q Consensus 313 ~~~~li~~~~~~~~~~~a~~~~~~~~~~------------------------~~~p~~~~~~~li~~~~~~g~~~~A~~~ 368 (453)
.|..+...|.+.|++++|.+.++..... ++..+...+..++..|.+.|.+++|+.+
T Consensus 1223 ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~L 1302 (1630)
T 1xi4_A 1223 NFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITM 1302 (1630)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4566666666666666666555433211 1122555677888899999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhC--CCHHHHHHHHHHHhhCCCCC------CHHHHHHHHhchhcchhhH
Q 039177 369 LEEALNKGLCTQSSMFDETICGLCQR--GLVRKALELLKQMADKDVSP------GARVWEALLLSSVSKLDFV 433 (453)
Q Consensus 369 ~~~m~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~~~~ll~a~~~~~~~~ 433 (453)
++...... .-...+|..+...|++- ++..++.++|..-. .+.| +...|..++.-|..-++..
T Consensus 1303 lE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~d 1372 (1630)
T 1xi4_A 1303 LEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYD 1372 (1630)
T ss_pred HHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHH
Confidence 98887655 44556777777777664 34555555555332 3333 4566777766665444433
No 58
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.48 E-value=1.6e-11 Score=101.34 Aligned_cols=166 Identities=13% Similarity=0.035 Sum_probs=89.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 039177 205 GMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYIN 284 (453)
Q Consensus 205 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 284 (453)
+..+|..+...|.+.|++++|++.|++..+..+. +..+|..+..+|.+.|++++|...+....... ..+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 3445556666666666666666666665554333 45555555556666666666666655555433 223444444455
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH
Q 039177 285 GLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIE 364 (453)
Q Consensus 285 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 364 (453)
.+...++++.+...+....+... -+...+..+...|.+.|++++|+..|+...+..+. +..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 55555555555555555554321 13445555555555555555555555555554333 44555555555555555555
Q ss_pred HHHHHHHHHH
Q 039177 365 ACGLLEEALN 374 (453)
Q Consensus 365 A~~~~~~m~~ 374 (453)
|.+.|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555544
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.47 E-value=3.9e-12 Score=115.39 Aligned_cols=279 Identities=13% Similarity=0.062 Sum_probs=153.1
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHH
Q 039177 82 AYHFVIKTLAENSQFCDISSVLDHIEKRENFETP----EFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEIL 157 (453)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~ 157 (453)
.+......+...|++++|...|+.+.+.. +.+ ..++..+...|...|++++|...|++ ++++.
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-----------al~~~ 73 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH-----------DLTLA 73 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-----------HHHHh
Confidence 34455677888999999999999999873 333 46788899999999999999999877 33333
Q ss_pred HHHHHCCCcc-ChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCC-cC----hhhHHHHHHHHHhcCC----------
Q 039177 158 NCMINDGFCV-DGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFC-FG----MVDYTNVIRSLVKKEK---------- 221 (453)
Q Consensus 158 ~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~li~~~~~~g~---------- 221 (453)
... +..| ...++..+...+...|++ ++|...+++..+.... .+ ..++..+...|...|+
T Consensus 74 ~~~---~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (338)
T 3ro2_A 74 RTI---GDQLGEAKASGNLGNTLKVLGNF--DEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDT 148 (338)
T ss_dssp HHH---TCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC--
T ss_pred hcc---cccHHHHHHHHHHHHHHHHccCH--HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhh
Confidence 222 2122 244666677777777777 7777777765543100 11 2356666666777776
Q ss_pred ----------hhHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 039177 222 ----------VFDALGILNQMKSD----GI-KPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGL 286 (453)
Q Consensus 222 ----------~~~a~~~~~~m~~~----~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 286 (453)
+++|.+.+++..+. +. .....++..+...+...|++++|...+++..+...
T Consensus 149 ~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-------------- 214 (338)
T 3ro2_A 149 GEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK-------------- 214 (338)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--------------
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--------------
Confidence 66666666554321 00 00122344444444555555555555544432100
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cC----HHHHHHHHHHHHhcC
Q 039177 287 CKQNNVEAGIKMIACMEELGSK-PDVITYNTLLQALCKVRELNRLRELVKEMKWKGIV-LN----LQTYSIMIDGLASKG 360 (453)
Q Consensus 287 ~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~g 360 (453)
..+.. ....++..+...|...|++++|...++...+.... .+ ..++..+...|...|
T Consensus 215 -----------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 277 (338)
T 3ro2_A 215 -----------------EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ 277 (338)
T ss_dssp -----------------HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred -----------------hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhc
Confidence 00000 00124444555555555555555555544432100 01 334555555566666
Q ss_pred CHHHHHHHHHHHHHC----CC-CCChhhHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 039177 361 DIIEACGLLEEALNK----GL-CTQSSMFDETICGLCQRGLVRKALELLKQMAD 409 (453)
Q Consensus 361 ~~~~A~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (453)
++++|...+++..+. +- .....++..+...|.+.|++++|..++++..+
T Consensus 278 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 278 DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 666666666555432 10 01122455556666666666666666666553
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.47 E-value=1.7e-11 Score=101.05 Aligned_cols=174 Identities=13% Similarity=0.048 Sum_probs=151.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039177 240 DIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQ 319 (453)
Q Consensus 240 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 319 (453)
+...|..+...|...|++++|+..|++.++.. +-+..++..+..+|.+.|++++|...+........ .+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 67789999999999999999999999998865 34678889999999999999999999999988643 35678888889
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHH
Q 039177 320 ALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRK 399 (453)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 399 (453)
.+...++++.+...+....+.... +...+..+...|.+.|++++|++.|++..+.+ +.+...|..+...|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 999999999999999999887655 78899999999999999999999999998875 4466788999999999999999
Q ss_pred HHHHHHHHhhCCCCCCHHHH
Q 039177 400 ALELLKQMADKDVSPGARVW 419 (453)
Q Consensus 400 A~~~~~~m~~~~~~p~~~~~ 419 (453)
|++.|++..+ +.|+...|
T Consensus 160 A~~~~~~al~--~~p~~a~~ 177 (184)
T 3vtx_A 160 AVKYFKKALE--KEEKKAKY 177 (184)
T ss_dssp HHHHHHHHHH--TTHHHHHH
T ss_pred HHHHHHHHHh--CCccCHHH
Confidence 9999999885 45655433
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.47 E-value=1.8e-12 Score=121.59 Aligned_cols=272 Identities=12% Similarity=-0.029 Sum_probs=206.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCccC-h----HhHHHHHHHHHhcCCCChHHH
Q 039177 116 EFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCVD-G----KTCSLILSSVCEQRDLSSDEL 190 (453)
Q Consensus 116 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~----~~~~~ll~~~~~~~~~~~~~a 190 (453)
...+..+...+...|++++|+..|++..+ . .|+ . ..+..+...+...|++ ++|
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~------------------~--~~~~~~~~~~~~~~lg~~~~~~g~~--~~A 105 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQ------------------A--GTEDLRTLSAIYSQLGNAYFYLGDY--NKA 105 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------H--CCSCHHHHHHHHHHHHHHHHHHTCH--HHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHH------------------h--cccChhHHHHHHHHHHHHHHHCCCH--HHH
Confidence 34455677788889999999998887432 1 232 2 4678888899999999 999
Q ss_pred HHHHHHHHHc----C-CCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhcCC----
Q 039177 191 LGFVQEMKKL----G-FCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSD----G-IKPDIVCYTMVLNGVIVQED---- 256 (453)
Q Consensus 191 ~~~~~~~~~~----g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~-~~~~~~~~~~ll~~~~~~g~---- 256 (453)
...+++..+. + .+....++..+...|...|++++|+..+++..+. + ......++..+...|...|+
T Consensus 106 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 185 (411)
T 4a1s_A 106 MQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQ 185 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCccccc
Confidence 9999887654 1 1234567889999999999999999999988753 1 12234578888899999999
Q ss_pred -------------HHHHHHHHHHHHHC----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHH
Q 039177 257 -------------YVKAEELFDELLVL----GL-VPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSK-PD----VIT 313 (453)
Q Consensus 257 -------------~~~a~~~~~~m~~~----g~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~ 313 (453)
+++|...+++..+. +. .....++..+...|...|++++|...+++..+.... .+ ..+
T Consensus 186 ~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 265 (411)
T 4a1s_A 186 RNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRA 265 (411)
T ss_dssp HSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 99999999886542 11 112347788888999999999999999988753210 12 237
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCChhh
Q 039177 314 YNTLLQALCKVRELNRLRELVKEMKWKGIV-----LNLQTYSIMIDGLASKGDIIEACGLLEEALNK----GL-CTQSSM 383 (453)
Q Consensus 314 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~~~~~~ 383 (453)
+..+...|...|++++|...++...+.... ....++..+...|...|++++|...+++..+. +. .....+
T Consensus 266 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 345 (411)
T 4a1s_A 266 NSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARA 345 (411)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHH
Confidence 888999999999999999999988764211 12567888999999999999999999988754 11 111346
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhh
Q 039177 384 FDETICGLCQRGLVRKALELLKQMAD 409 (453)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (453)
+..+...|...|++++|..++++..+
T Consensus 346 ~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 346 CWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 77888999999999999999999875
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.45 E-value=5e-12 Score=120.76 Aligned_cols=214 Identities=10% Similarity=-0.087 Sum_probs=172.2
Q ss_pred HHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 039177 188 DELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKV-FDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDE 266 (453)
Q Consensus 188 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 266 (453)
+++...++...... +.+...+..+...|...|++ ++|++.|++..+.... +...|..+..+|...|++++|...|++
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55666666555443 34677888888999999999 9999999998876543 678888999999999999999999999
Q ss_pred HHHCCCCCChhhHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHHH
Q 039177 267 LLVLGLVPDVYTYNVYINGLCKQ---------NNVEAGIKMIACMEELGSKPDVITYNTLLQALCKV--------RELNR 329 (453)
Q Consensus 267 m~~~g~~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------~~~~~ 329 (453)
.++.. |+...+..+...|... |++++|.+.|++..+... -+...|..+..+|... |++++
T Consensus 163 al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 88754 6678888888888888 999999999999888542 2567888888888888 88999
Q ss_pred HHHHHHHHHHCCCC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 039177 330 LRELVKEMKWKGIV--LNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQM 407 (453)
Q Consensus 330 a~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (453)
|...|+...+.... -+...|..+..+|...|++++|.+.|++..+.. ..+...+..+...+...|++++|++.+.++
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999887441 278889999999999999999999999988764 335566788888888888888888755443
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.44 E-value=6.5e-12 Score=117.39 Aligned_cols=275 Identities=12% Similarity=-0.019 Sum_probs=207.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCccC-----hHhHHHHHHHHHhcCCCCh
Q 039177 113 ETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCVD-----GKTCSLILSSVCEQRDLSS 187 (453)
Q Consensus 113 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~~~~~~ 187 (453)
......+......+...|++++|+..|++..+ . .|+ ..++..+...+...|++
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~------------------~--~~~~~~~~~~~~~~l~~~~~~~g~~-- 63 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQ------------------V--GTEDLKTLSAIYSQLGNAYFYLHDY-- 63 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------H--CCSCHHHHHHHHHHHHHHHHHTTCH--
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh------------------c--CcccHHHHHHHHHHHHHHHHHhcCH--
Confidence 34556677788889999999999999887432 1 222 35678888899999999
Q ss_pred HHHHHHHHHHHHc----CCCc-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCC-
Q 039177 188 DELLGFVQEMKKL----GFCF-GMVDYTNVIRSLVKKEKVFDALGILNQMKSDGI-----KPDIVCYTMVLNGVIVQED- 256 (453)
Q Consensus 188 ~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----~~~~~~~~~ll~~~~~~g~- 256 (453)
++|...+++.... +..+ ...++..+...|...|++++|+..+++..+... .....++..+...|...|+
T Consensus 64 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 143 (406)
T 3sf4_A 64 AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKS 143 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCc
Confidence 9999999886543 2222 255688899999999999999999998875311 1124478888889999999
Q ss_pred -------------------HHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC-
Q 039177 257 -------------------YVKAEELFDELLVL----GLVP-DVYTYNVYINGLCKQNNVEAGIKMIACMEELGS-KPD- 310 (453)
Q Consensus 257 -------------------~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~- 310 (453)
+++|...+.+..+. +..+ ...++..+...|...|++++|...+++..+... .++
T Consensus 144 ~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 223 (406)
T 3sf4_A 144 FGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK 223 (406)
T ss_dssp CC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999887542 1111 234678888899999999999999998775311 122
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC
Q 039177 311 ---VITYNTLLQALCKVRELNRLRELVKEMKWKGI----VL-NLQTYSIMIDGLASKGDIIEACGLLEEALNK----GLC 378 (453)
Q Consensus 311 ---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~ 378 (453)
..++..+...|...|++++|...++...+... .+ ...++..+...|...|++++|...+++..+. +-.
T Consensus 224 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 303 (406)
T 3sf4_A 224 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDR 303 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCc
Confidence 23788889999999999999999998875411 11 1557888999999999999999999988654 111
Q ss_pred C-ChhhHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 039177 379 T-QSSMFDETICGLCQRGLVRKALELLKQMAD 409 (453)
Q Consensus 379 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (453)
+ ...++..+...|...|++++|...+++..+
T Consensus 304 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 304 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 144677888899999999999999998764
No 64
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.42 E-value=7.5e-12 Score=112.41 Aligned_cols=239 Identities=13% Similarity=-0.024 Sum_probs=161.8
Q ss_pred ChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHc-------CCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhC-----
Q 039177 168 DGKTCSLILSSVCEQRDLSSDELLGFVQEMKKL-------GFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSD----- 235 (453)
Q Consensus 168 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----- 235 (453)
+..++..+...+...|++ ++|..+++++.+. ..+....++..+...|...|++++|+..+++..+.
T Consensus 26 ~~~~~~~l~~~~~~~g~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRY--EVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp HHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 345778888888888988 8999999888774 23344567888888999999999999999888753
Q ss_pred -C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 039177 236 -G-IKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVL------GLV-PDVYTYNVYINGLCKQNNVEAGIKMIACMEEL- 305 (453)
Q Consensus 236 -~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~- 305 (453)
+ ......++..+...|...|++++|...+++..+. +.. .....+..+...|...|++++|.+.++...+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1 1224567788888888999999999999888763 211 23456777888888999999999999888764
Q ss_pred -----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCcC-------HHHHHHHHHHHHhcCCHHHH
Q 039177 306 -----GSKPD-VITYNTLLQALCKVRELNRLRELVKEMKWKG-------IVLN-------LQTYSIMIDGLASKGDIIEA 365 (453)
Q Consensus 306 -----~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-------~~p~-------~~~~~~li~~~~~~g~~~~A 365 (453)
+..|+ ..++..+...|...|++++|...++.+.+.. ..+. ...+..+...+...+.+.+|
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 21232 3467888888889999999999998887631 1111 11222233334445555566
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 039177 366 CGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMAD 409 (453)
Q Consensus 366 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (453)
...+....... .....++..+...|.+.|++++|.++|++..+
T Consensus 264 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 264 GGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp C---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666655432 33455688888999999999999999998764
No 65
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.42 E-value=2.2e-12 Score=115.95 Aligned_cols=249 Identities=12% Similarity=0.001 Sum_probs=175.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHH
Q 039177 113 ETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLG 192 (453)
Q Consensus 113 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~ 192 (453)
+.+..++..+...|...|++++|+.+|++ +++++.............++..+...+...|+. ++|..
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-----------a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~ 90 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQ-----------ALEDLEKTSGHDHPDVATMLNILALVYRDQNKY--KDAAN 90 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCH--HHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHH-----------HHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCH--HHHHH
Confidence 44567888999999999999999999987 444444443222333456788899999999999 99999
Q ss_pred HHHHHHHc------C-CCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHhcCCHH
Q 039177 193 FVQEMKKL------G-FCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSD------GI-KPDIVCYTMVLNGVIVQEDYV 258 (453)
Q Consensus 193 ~~~~~~~~------g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~-~~~~~~~~~ll~~~~~~g~~~ 258 (453)
.+++..+. + .+....++..+...|...|++++|++.|++..+. +. .....++..+...+...|+++
T Consensus 91 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 170 (311)
T 3nf1_A 91 LLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYE 170 (311)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHH
Confidence 99988765 2 2334567899999999999999999999998764 22 224567888899999999999
Q ss_pred HHHHHHHHHHHC------CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCH-------HHHHHH
Q 039177 259 KAEELFDELLVL------GLVP-DVYTYNVYINGLCKQNNVEAGIKMIACMEEL-------GSKPDV-------ITYNTL 317 (453)
Q Consensus 259 ~a~~~~~~m~~~------g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~-------~~~~~l 317 (453)
+|..++++..+. +..| ...++..+...|...|++++|...++.+.+. ...+.. ..+..+
T Consensus 171 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (311)
T 3nf1_A 171 EVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREEC 250 (311)
T ss_dssp HHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHh
Confidence 999999998764 2122 3456788899999999999999999998752 111111 123333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 318 LQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNK 375 (453)
Q Consensus 318 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 375 (453)
...+...+.+.++...+......... +..++..+..+|.+.|++++|.+.|++..+.
T Consensus 251 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 251 KGKQKDGTSFGEYGGWYKACKVDSPT-VTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp -------CCSCCCC---------CHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cCchhhHHHHHHHHHHHhhcCCCCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34444556666667777766654322 5678899999999999999999999988653
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.41 E-value=1e-11 Score=112.60 Aligned_cols=235 Identities=11% Similarity=-0.015 Sum_probs=133.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----hh
Q 039177 208 DYTNVIRSLVKKEKVFDALGILNQMKSD----GIK-PDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGL-VPD----VY 277 (453)
Q Consensus 208 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~ 277 (453)
.+..+...|...|++++|++.+++..+. +.. ....++..+...+...|++++|...+++..+... ..+ ..
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 124 (338)
T 3ro2_A 45 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 124 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHH
Confidence 3444444444444444444444443221 000 1133444444455555555555555544332100 011 22
Q ss_pred hHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 039177 278 TYNVYINGLCKQNN--------------------VEAGIKMIACMEEL----GSKP-DVITYNTLLQALCKVRELNRLRE 332 (453)
Q Consensus 278 ~~~~li~~~~~~~~--------------------~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~ 332 (453)
++..+...|...|+ +++|.+.++...+. +..+ ...++..+...|...|++++|..
T Consensus 125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 204 (338)
T 3ro2_A 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 204 (338)
T ss_dssp HHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 44555555555555 66666666554321 1111 13467778888888999999999
Q ss_pred HHHHHHHCC----C-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHHHhCCCHHHHHH
Q 039177 333 LVKEMKWKG----I-VLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGL-CTQ----SSMFDETICGLCQRGLVRKALE 402 (453)
Q Consensus 333 ~~~~~~~~~----~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~ 402 (453)
.++...+.. . .....++..+...|...|++++|...+++..+... ..+ ..++..+...|...|++++|..
T Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (338)
T 3ro2_A 205 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 284 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 888876541 1 11234788889999999999999999998865411 111 4567788899999999999999
Q ss_pred HHHHHhhC----CCCCC-HHHHHHHHhchh--cchhhHHHHHHHHHH
Q 039177 403 LLKQMADK----DVSPG-ARVWEALLLSSV--SKLDFVNTSFIRLVD 442 (453)
Q Consensus 403 ~~~~m~~~----~~~p~-~~~~~~ll~a~~--~~~~~~~~~~~~~~~ 442 (453)
++++..+. +-.+. ..++..+-..+. ++.+.+...+.+.++
T Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 285 YHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 99998652 11111 224444444443 444445555555544
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.40 E-value=3.9e-11 Score=111.49 Aligned_cols=230 Identities=12% Similarity=0.026 Sum_probs=175.1
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHc----CCCc-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC--C----CCCHHH
Q 039177 175 ILSSVCEQRDLSSDELLGFVQEMKKL----GFCF-GMVDYTNVIRSLVKKEKVFDALGILNQMKSDG--I----KPDIVC 243 (453)
Q Consensus 175 ll~~~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~----~~~~~~ 243 (453)
....+...|+. ++|...+++..+. +..+ ...++..+...|...|++++|+..+++..+.. . .....+
T Consensus 109 ~g~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 186 (383)
T 3ulq_A 109 RGMYELDQREY--LSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQC 186 (383)
T ss_dssp HHHHHHHTTCH--HHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHH
T ss_pred HHHHHHHhcCH--HHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHH
Confidence 45567788888 9999999998765 2122 34678999999999999999999999887531 1 112457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHH
Q 039177 244 YTMVLNGVIVQEDYVKAEELFDELLVLGLV-PD----VYTYNVYINGLCKQNNVEAGIKMIACMEEL----GS-KPDVIT 313 (453)
Q Consensus 244 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~p~~~~ 313 (453)
++.+...|...|++++|...|++..+.... .+ ..++..+...|...|++++|.+.|++..+. +. .....+
T Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 266 (383)
T 3ulq_A 187 HSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQA 266 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence 888889999999999999999988653111 11 247788899999999999999999988762 22 223568
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCcCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-hhhHH
Q 039177 314 YNTLLQALCKVRELNRLRELVKEMKWKG----IVLNLQTYSIMIDGLASKGD---IIEACGLLEEALNKGLCTQ-SSMFD 385 (453)
Q Consensus 314 ~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~-~~~~~ 385 (453)
+..+...|.+.|++++|...++...+.. -......+..+...|...|+ +++|..++++. +..++ ...+.
T Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~ 343 (383)
T 3ulq_A 267 YFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAI 343 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHH
Confidence 8999999999999999999999887641 11123345778888889999 77777777765 32232 34677
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhh
Q 039177 386 ETICGLCQRGLVRKALELLKQMAD 409 (453)
Q Consensus 386 ~li~~~~~~g~~~~A~~~~~~m~~ 409 (453)
.+...|...|++++|..++++..+
T Consensus 344 ~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 344 DVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 788999999999999999999764
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.39 E-value=6.4e-10 Score=99.91 Aligned_cols=218 Identities=8% Similarity=0.013 Sum_probs=113.3
Q ss_pred chHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh-------cCCh-------hHHHHHHhhcccCCCCcHHHHHHHHHHHHH
Q 039177 97 CDISSVLDHIEKRENFETPEFIFIDLIKTYAD-------AHRF-------QDSVNLFYKIPKFRINRVGFAIEILNCMIN 162 (453)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~ 162 (453)
+.|..+|++..... +.+..+|..++..+.. .|++ ++|+.+|++ .+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~r------------------Al~ 92 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYER------------------AIS 92 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH------------------HHT
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHH------------------HHH
Confidence 57788999998863 6678899988888764 3554 444444443 332
Q ss_pred CCCcc-ChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcC-hh-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 039177 163 DGFCV-DGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFG-MV-DYTNVIRSLVKKEKVFDALGILNQMKSDGIKP 239 (453)
Q Consensus 163 ~~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 239 (453)
. +.| +...|..+...+...|+. ++|..+|++..+.. |+ .. +|..++..+.+.|++++|..+|++..+....
T Consensus 93 ~-~~p~~~~~~~~~~~~~~~~~~~--~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~- 166 (308)
T 2ond_A 93 T-LLKKNMLLYFAYADYEESRMKY--EKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART- 166 (308)
T ss_dssp T-TTTTCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-
T ss_pred H-hCcccHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-
Confidence 1 123 233555555555555555 56666666555532 22 22 4555555555555555555555555543221
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039177 240 DIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQ 319 (453)
Q Consensus 240 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 319 (453)
+...|....... +...|+.++|..+|+...+... -+...|..++.
T Consensus 167 ~~~~~~~~a~~~----------------------------------~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~ 211 (308)
T 2ond_A 167 RHHVYVTAALME----------------------------------YYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYID 211 (308)
T ss_dssp CTHHHHHHHHHH----------------------------------HHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred CHHHHHHHHHHH----------------------------------HHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence 222222111111 1123555555555555544321 13445555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC-CCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 320 ALCKVRELNRLRELVKEMKWKG-IVL--NLQTYSIMIDGLASKGDIIEACGLLEEALNK 375 (453)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 375 (453)
.+.+.|++++|..+|+...... ..| ....|..++..+.+.|+.+.|..+++++.+.
T Consensus 212 ~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 212 YLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5555555555555555555542 222 3445555555555556666666655555543
No 69
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.35 E-value=2.1e-10 Score=94.13 Aligned_cols=164 Identities=13% Similarity=0.005 Sum_probs=100.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 039177 207 VDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGL 286 (453)
Q Consensus 207 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 286 (453)
..+..+...+...|++++|++.++++.+.... +..++..+...+...|++++|...++.+.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34556666667777777777777766654322 55666666666677777777777777666543 23455566666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 039177 287 CKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEAC 366 (453)
Q Consensus 287 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 366 (453)
...|++++|.+.++.+.+.. ..+...+..+...|...|++++|...++.+.+.... +...+..+...|...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666666665542 124455666666666666666666666666555332 4555666666666666666666
Q ss_pred HHHHHHHH
Q 039177 367 GLLEEALN 374 (453)
Q Consensus 367 ~~~~~m~~ 374 (453)
..+++..+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665544
No 70
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.34 E-value=1.2e-10 Score=108.07 Aligned_cols=229 Identities=11% Similarity=-0.001 Sum_probs=158.8
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHcCC-Cc----ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC----C-CCC-CHHH
Q 039177 175 ILSSVCEQRDLSSDELLGFVQEMKKLGF-CF----GMVDYTNVIRSLVKKEKVFDALGILNQMKSD----G-IKP-DIVC 243 (453)
Q Consensus 175 ll~~~~~~~~~~~~~a~~~~~~~~~~g~-~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~-~~~-~~~~ 243 (453)
....+...|+. ++|...|++..+... .+ ...++..+...|...|+++.|+..+++..+. + ..+ ...+
T Consensus 107 ~g~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 107 RGMYEFDQKEY--VEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHTTCH--HHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHCCH--HHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 34445677887 888888888765421 11 2456788888888999999998888887652 1 111 2456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 039177 244 YTMVLNGVIVQEDYVKAEELFDELLVL----GLVP-DVYTYNVYINGLCKQNNVEAGIKMIACMEE-----LGSKPDVIT 313 (453)
Q Consensus 244 ~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~ 313 (453)
++.+..+|...|++++|...|.+..+. +..+ ...++..+...|...|++++|.+.|++..+ ... ....+
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~ 263 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD-LLPKV 263 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG-GHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh-hHHHH
Confidence 777888888899999999888877652 1111 134567778888889999999988888776 322 23567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCcCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-ChhhHH
Q 039177 314 YNTLLQALCKVRELNRLRELVKEMKWKG----IVLNLQTYSIMIDGLASKGD---IIEACGLLEEALNKGLCT-QSSMFD 385 (453)
Q Consensus 314 ~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~-~~~~~~ 385 (453)
+..+...|.+.|++++|...++...+.. -......+..+...|...|+ +.+|...+++ .+..+ ....+.
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~ 340 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACAR 340 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHH
Confidence 8888888889999999999988887642 11123355666667777777 7777777765 22222 233566
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhh
Q 039177 386 ETICGLCQRGLVRKALELLKQMAD 409 (453)
Q Consensus 386 ~li~~~~~~g~~~~A~~~~~~m~~ 409 (453)
.+...|...|++++|...|++..+
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777888889999999988888753
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.33 E-value=1.3e-10 Score=111.08 Aligned_cols=196 Identities=13% Similarity=0.038 Sum_probs=165.1
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 039177 222 VFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDY-VKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIA 300 (453)
Q Consensus 222 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 300 (453)
+++++..++....... .+...+..+..++...|++ ++|++.|++.++.. +.+...|..+..+|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5677777777665433 4788899999999999999 99999999998864 3457899999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc--------CCHH
Q 039177 301 CMEELGSKPDVITYNTLLQALCKV---------RELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASK--------GDII 363 (453)
Q Consensus 301 ~m~~~~~~p~~~~~~~li~~~~~~---------~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~ 363 (453)
...+. .|+...+..+...|... |++++|...+++..+.... +...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 99985 47788999999999999 9999999999999998665 788999999999998 9999
Q ss_pred HHHHHHHHHHHCCCC--CChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCH-HHHHHHHh
Q 039177 364 EACGLLEEALNKGLC--TQSSMFDETICGLCQRGLVRKALELLKQMADKDVSPGA-RVWEALLL 424 (453)
Q Consensus 364 ~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~ 424 (453)
+|...|++..+.+.. .+...|..+...|...|++++|.+.|++..+. .|+. ..+..+-.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~ 300 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQ 300 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 999999999886411 46778999999999999999999999998853 4543 33444433
No 72
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.32 E-value=1.8e-10 Score=109.30 Aligned_cols=191 Identities=12% Similarity=-0.039 Sum_probs=126.2
Q ss_pred hhhHHHHHHHHHhcC---ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCChhh
Q 039177 206 MVDYTNVIRSLVKKE---KVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQ----EDYVKAEELFDELLVLGLVPDVYT 278 (453)
Q Consensus 206 ~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----g~~~~a~~~~~~m~~~g~~~~~~~ 278 (453)
...+..|...|.+.| +.++|++.|++..+.|.. +...+..+...|... +++++|..+|+... . -+...
T Consensus 176 ~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a 250 (452)
T 3e4b_A 176 DICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPAS 250 (452)
T ss_dssp TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHH
T ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHH
Confidence 346777777777777 777788888777777644 444445566666544 57778888877766 3 34455
Q ss_pred HHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCcCHHHHH
Q 039177 279 YNVYING-L--CKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVR-----ELNRLRELVKEMKWKGIVLNLQTYS 350 (453)
Q Consensus 279 ~~~li~~-~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-----~~~~a~~~~~~~~~~~~~p~~~~~~ 350 (453)
+..+... | ...++.++|.+.|+...+.| +...+..|...|. .| ++++|...|+... .| +...+.
T Consensus 251 ~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~ 322 (452)
T 3e4b_A 251 WVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADY 322 (452)
T ss_dssp HHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHH
Confidence 5555555 3 45777888888888777755 5666666666666 44 7788888887766 32 566667
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----CCCHHHHHHHHHHHhhCCC
Q 039177 351 IMIDGLAS----KGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQ----RGLVRKALELLKQMADKDV 412 (453)
Q Consensus 351 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~ 412 (453)
.|...|.. ..+.++|...|++..+.|. ......|...|.. ..+.++|..+|+...+.|.
T Consensus 323 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 323 YLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 77776665 3377888888887777662 3334445555543 3477888888888777664
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.32 E-value=3.1e-10 Score=93.15 Aligned_cols=165 Identities=16% Similarity=0.069 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 039177 241 IVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQA 320 (453)
Q Consensus 241 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 320 (453)
...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. ..+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4567778888999999999999999887653 3467788889999999999999999999998864 2367788999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHH
Q 039177 321 LCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKA 400 (453)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 400 (453)
|...|++++|...++.+.+.... +...+..+...|...|++++|...++++.+.. ..+...+..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999887544 77889999999999999999999999998875 44567888899999999999999
Q ss_pred HHHHHHHhh
Q 039177 401 LELLKQMAD 409 (453)
Q Consensus 401 ~~~~~~m~~ 409 (453)
...+++..+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 74
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.30 E-value=1.8e-10 Score=114.64 Aligned_cols=166 Identities=8% Similarity=-0.039 Sum_probs=128.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 039177 205 GMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYIN 284 (453)
Q Consensus 205 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 284 (453)
+..+|+.|...|.+.|++++|++.|++..+.... +..+|..+..+|.+.|++++|++.|++.++.. +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4566888888888888888888888888776443 67778888888888888888888888887754 234667888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH
Q 039177 285 GLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIE 364 (453)
Q Consensus 285 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 364 (453)
+|.+.|++++|.+.|++..+... -+...|+.+..+|.+.|++++|+..|++.++.... +...+..+..+|...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence 88888888888888888877532 14567888888888888888888888888877555 67788888888888888888
Q ss_pred HHHHHHHHHH
Q 039177 365 ACGLLEEALN 374 (453)
Q Consensus 365 A~~~~~~m~~ 374 (453)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887776654
No 75
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.29 E-value=1.1e-09 Score=103.92 Aligned_cols=305 Identities=8% Similarity=0.014 Sum_probs=188.2
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHhhcccCC-------------C--
Q 039177 86 VIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRF---QDSVNLFYKIPKFR-------------I-- 147 (453)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~-------------~-- 147 (453)
+...+.+.|++++|.++|+...+. |. + ..+..|...|...|+. ++|...|++..+.+ .
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~-g~-~--~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAEL-GY-S--EAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-TC-C--TGGGTCC----------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHC-CC-H--HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC
Confidence 344455566666777777666655 21 2 2334455555555665 66666665543322 1
Q ss_pred ---CcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCCh-HHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChh
Q 039177 148 ---NRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSS-DELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVF 223 (453)
Q Consensus 148 ---~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 223 (453)
++.++|+..|+.....|. ...+..|...|...+.... ..+.+.+......| +...+..|...|...+.++
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 356677777777777653 2356666666665554311 34555555555544 4567778888888888666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc----CCHHHHH
Q 039177 224 DALGILNQMKSDGIKPDIVCYTMVLNGVIVQE---DYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQ----NNVEAGI 296 (453)
Q Consensus 224 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~----~~~~~a~ 296 (453)
++......+.+.-...+...+..|...|...| +.++|+..|+...+.| .++...+..+...|... ++.++|.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 55555433333212224447788888888888 8889999999988877 34555545666666554 6899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC-----CHHHHHHH
Q 039177 297 KMIACMEELGSKPDVITYNTLLQA-L--CKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKG-----DIIEACGL 368 (453)
Q Consensus 297 ~~~~~m~~~~~~p~~~~~~~li~~-~--~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~ 368 (453)
+.|+... .| +...+..|... | ...+++++|...|+...+.| +...+..|...|. .| ++++|...
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 9998887 33 45566666665 3 46889999999999988876 6777788888887 55 89999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHh----CCCHHHHHHHHHHHhhCCCC
Q 039177 369 LEEALNKGLCTQSSMFDETICGLCQ----RGLVRKALELLKQMADKDVS 413 (453)
Q Consensus 369 ~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~ 413 (453)
|++.. .| +...+..|...|.. ..++++|..+|++..+.|..
T Consensus 310 ~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 354 (452)
T 3e4b_A 310 FEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQN 354 (452)
T ss_dssp HHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCT
T ss_pred HHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChH
Confidence 98876 33 45556666666655 33899999999998877653
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.28 E-value=3.8e-09 Score=97.56 Aligned_cols=274 Identities=9% Similarity=-0.047 Sum_probs=184.6
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHcCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHH
Q 039177 85 FVIKTLAENSQFCDISSVLDHIEKRENFETPE----FIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCM 160 (453)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m 160 (453)
.....+...|+++.|...++....... ..+. .+++.+...|...|++++|...+++. +.+...
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-----------l~~~~~- 85 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT-----------EQMARQ- 85 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-----------HHHHHH-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHH-----------HHHHHh-
Confidence 344566679999999999999887632 2222 25667778888999999999988773 333222
Q ss_pred HHCCCc-cChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHc----CCC--c-ChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 039177 161 INDGFC-VDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKL----GFC--F-GMVDYTNVIRSLVKKEKVFDALGILNQM 232 (453)
Q Consensus 161 ~~~~~~-p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~----g~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m 232 (453)
.|.. ....++..+...+...|++ ++|...+++..+. +.. | ....+..+...+...|++++|...+++.
T Consensus 86 --~~~~~~~~~~~~~la~~~~~~G~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 161 (373)
T 1hz4_A 86 --HDVWHYALWSLIQQSEILFAQGFL--QTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG 161 (373)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --cCcHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 2211 1123456677778888988 8999888877653 221 2 2345667888889999999999999888
Q ss_pred HhCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHH-----HHHHHHHhcCCHHHHHHHHHHH
Q 039177 233 KSDGIK----PDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDV-YTYN-----VYINGLCKQNNVEAGIKMIACM 302 (453)
Q Consensus 233 ~~~~~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~-----~li~~~~~~~~~~~a~~~~~~m 302 (453)
...... ....++..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...++..
T Consensus 162 l~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 241 (373)
T 1hz4_A 162 IEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT 241 (373)
T ss_dssp HHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 753221 12356777788888899999999999887653211211 1221 2334477889999999988887
Q ss_pred HHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 303 EELGSKP---DVITYNTLLQALCKVRELNRLRELVKEMKWK----GIVLNL-QTYSIMIDGLASKGDIIEACGLLEEALN 374 (453)
Q Consensus 303 ~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 374 (453)
......+ ....+..+...+...|++++|...++..... |..++. .++..+..++...|+.++|...+++...
T Consensus 242 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 242 AKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp CCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6543211 1235667778888889999998888877553 222222 2566667778888888888888887765
Q ss_pred C
Q 039177 375 K 375 (453)
Q Consensus 375 ~ 375 (453)
.
T Consensus 322 ~ 322 (373)
T 1hz4_A 322 L 322 (373)
T ss_dssp H
T ss_pred H
Confidence 3
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.28 E-value=3.4e-09 Score=97.87 Aligned_cols=271 Identities=9% Similarity=-0.042 Sum_probs=189.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCccCh----HhHHHHHHHHHhcCCCChHHHHHHH
Q 039177 119 FIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCVDG----KTCSLILSSVCEQRDLSSDELLGFV 194 (453)
Q Consensus 119 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~~~a~~~~ 194 (453)
.......+...|++++|...+++. ....-..+. .+++.+...+...|++ ++|...+
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~a------------------l~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~ 76 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLA------------------LEELPPGWFYSRIVATSVLGEVLHCKGEL--TRSLALM 76 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH------------------HHTCCTTCHHHHHHHHHHHHHHHHHHTCH--HHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH------------------HHcCCCCchhHHHHHHHHHHHHHHhcCcH--HHHHHHH
Confidence 344455666788888888877763 222111122 2456666778889998 9999999
Q ss_pred HHHHHc----CCC-cChhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHH
Q 039177 195 QEMKKL----GFC-FGMVDYTNVIRSLVKKEKVFDALGILNQMKSD----GIK--P-DIVCYTMVLNGVIVQEDYVKAEE 262 (453)
Q Consensus 195 ~~~~~~----g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~--~-~~~~~~~ll~~~~~~g~~~~a~~ 262 (453)
++.... |.. ....++..+...+...|++++|.+.+++..+. +.. | ....+..+...+...|++++|..
T Consensus 77 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 156 (373)
T 1hz4_A 77 QQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA 156 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 887653 211 01233677888999999999999999988753 221 2 24466678888999999999999
Q ss_pred HHHHHHHCCCC--C--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHHhcCCHHHHHH
Q 039177 263 LFDELLVLGLV--P--DVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPD--VITYN----TLLQALCKVRELNRLRE 332 (453)
Q Consensus 263 ~~~~m~~~g~~--~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~----~li~~~~~~~~~~~a~~ 332 (453)
.+++....... + ...++..+...+...|++++|...+++.......++ ..... ..+..+...|++++|..
T Consensus 157 ~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 236 (373)
T 1hz4_A 157 SARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAAN 236 (373)
T ss_dssp HHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 99998764321 1 234577788889999999999999998875321111 22111 23345789999999999
Q ss_pred HHHHHHHCCCCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCh-hhHHHHHHHHHhCCCHHHHHHHH
Q 039177 333 LVKEMKWKGIVL---NLQTYSIMIDGLASKGDIIEACGLLEEALNK----GLCTQS-SMFDETICGLCQRGLVRKALELL 404 (453)
Q Consensus 333 ~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~-~~~~~li~~~~~~g~~~~A~~~~ 404 (453)
.+.........+ ....+..+...+...|++++|...+++.... +..++. ..+..+..++...|+.++|...+
T Consensus 237 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l 316 (373)
T 1hz4_A 237 WLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVL 316 (373)
T ss_dssp HHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999887653321 2335677888999999999999999987653 222222 25666678889999999999999
Q ss_pred HHHhh
Q 039177 405 KQMAD 409 (453)
Q Consensus 405 ~~m~~ 409 (453)
++...
T Consensus 317 ~~al~ 321 (373)
T 1hz4_A 317 LDALK 321 (373)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 78
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.28 E-value=3.6e-10 Score=104.95 Aligned_cols=235 Identities=7% Similarity=-0.055 Sum_probs=173.1
Q ss_pred HHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCcc-ChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Q 039177 122 LIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCV-DGKTCSLILSSVCEQRDLSSDELLGFVQEMKKL 200 (453)
Q Consensus 122 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~ 200 (453)
....+...|++++|+..|++.... + ...+-.+ ...++..+...+...|+. +.|...+.+..+.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~-----------~---~~~~~~~~~a~~~~~lg~~~~~~~~~--~~A~~~~~~al~~ 172 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESK-----------L---IFVKDRIEKAEFFFKMSESYYYMKQT--YFSMDYARQAYEI 172 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT-----------G---GGCCCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH-----------H---hhCCCHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHH
Confidence 556677889999999888774321 1 1111122 345788888999999999 9999999887764
Q ss_pred C--C----CcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC----C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 201 G--F----CFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGI----K-PDIVCYTMVLNGVIVQEDYVKAEELFDELLV 269 (453)
Q Consensus 201 g--~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 269 (453)
- . +....+++.+...|...|++++|++.|++..+... . ....++..+..+|...|++++|...+++..+
T Consensus 173 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 252 (383)
T 3ulq_A 173 YKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252 (383)
T ss_dssp HHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 1 11245688999999999999999999998875311 1 1224788899999999999999999999876
Q ss_pred C----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHH
Q 039177 270 L----GL-VPDVYTYNVYINGLCKQNNVEAGIKMIACMEELG----SKPDVITYNTLLQALCKVRE---LNRLRELVKEM 337 (453)
Q Consensus 270 ~----g~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~ 337 (453)
. +. .....++..+...|.+.|++++|...+++..+.. -......+..+...|...|+ +++|..+++..
T Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 253 VFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 2 22 3345678889999999999999999999877531 11112346677888889998 77777777655
Q ss_pred HHCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 338 KWKGIVL-NLQTYSIMIDGLASKGDIIEACGLLEEALNK 375 (453)
Q Consensus 338 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 375 (453)
+..| ....+..+...|...|++++|...+++..+.
T Consensus 333 ---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 333 ---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3333 3346778999999999999999999988653
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.26 E-value=4.6e-10 Score=111.76 Aligned_cols=165 Identities=12% Similarity=-0.011 Sum_probs=147.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 039177 240 DIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKP-DVITYNTLL 318 (453)
Q Consensus 240 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li 318 (453)
+..+|+.+...|.+.|++++|++.|++.++.. +-+..++..+..+|.+.|++++|.+.|++..+.. | +...|..+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 56789999999999999999999999998854 2357889999999999999999999999999854 4 467999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHH
Q 039177 319 QALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVR 398 (453)
Q Consensus 319 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 398 (453)
.+|.+.|++++|++.|++.++.... +...|..+..+|...|++++|++.|++..+.. .-+...+..+...|...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999999998665 78899999999999999999999999998875 335677899999999999999
Q ss_pred HHHHHHHHHhh
Q 039177 399 KALELLKQMAD 409 (453)
Q Consensus 399 ~A~~~~~~m~~ 409 (453)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888763
No 80
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.25 E-value=8.9e-11 Score=103.63 Aligned_cols=236 Identities=11% Similarity=-0.059 Sum_probs=167.1
Q ss_pred HHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHc-----
Q 039177 126 YADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKL----- 200 (453)
Q Consensus 126 ~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~----- 200 (453)
....|++++|+..|++ |++++........+....++..+...+...|++ ++|...+++..+.
T Consensus 11 ~~~~~~~~~A~~~~~~-----------al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~~~~~ 77 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQ-----------ALEDLEKTSGHDHPDVATMLNILALVYRDQNKY--KEAAHLLNDALAIREKTL 77 (283)
T ss_dssp --CCSCSSSHHHHHHH-----------HHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHH-----------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccH--HHHHHHHHHHHHHHHHHc
Confidence 3567888888888876 777777776544344567888999999999999 9999999988765
Q ss_pred -C-CCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 039177 201 -G-FCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSD------G-IKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVL- 270 (453)
Q Consensus 201 -g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~- 270 (453)
+ .+....++..+...|...|++++|++.|++..+. . .+....++..+...|...|++++|...+++..+.
T Consensus 78 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 157 (283)
T 3edt_B 78 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIY 157 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 2 1334567899999999999999999999998764 1 1234678888999999999999999999998764
Q ss_pred -----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCH-HHHHHHHHHHHhcCCHH------HH
Q 039177 271 -----GLVP-DVYTYNVYINGLCKQNNVEAGIKMIACMEEL-------GSKPDV-ITYNTLLQALCKVRELN------RL 330 (453)
Q Consensus 271 -----g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~-~~~~~li~~~~~~~~~~------~a 330 (453)
+..| ...++..+...|...|++++|...+++..+. ...+.. ..+..+...+...+... .+
T Consensus 158 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (283)
T 3edt_B 158 ATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEY 237 (283)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 1122 3567888899999999999999999988763 112222 23333433443333322 22
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 331 RELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNK 375 (453)
Q Consensus 331 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 375 (453)
...+...... ......++..+...|...|++++|..+|++..+.
T Consensus 238 ~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 238 GSWYKACKVD-SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp -----CCCCC-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2222221111 1224557888999999999999999999988653
No 81
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.25 E-value=1.2e-10 Score=102.79 Aligned_cols=226 Identities=12% Similarity=-0.042 Sum_probs=154.3
Q ss_pred hcCCCChHHHHHHHHHHHH-------cCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhC------CC-CCCHHHHHH
Q 039177 181 EQRDLSSDELLGFVQEMKK-------LGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSD------GI-KPDIVCYTM 246 (453)
Q Consensus 181 ~~~~~~~~~a~~~~~~~~~-------~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~-~~~~~~~~~ 246 (453)
..|++ ++|...+++..+ ...+....++..+...|...|++++|+..+++..+. +- +....++..
T Consensus 13 ~~~~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 13 GLVPR--GSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp CCSCS--SSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred CCCCH--HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 44555 556666655544 232345677899999999999999999999998754 21 224567888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC------C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHH
Q 039177 247 VLNGVIVQEDYVKAEELFDELLVL------G-LVPDVYTYNVYINGLCKQNNVEAGIKMIACMEEL------GSKP-DVI 312 (453)
Q Consensus 247 ll~~~~~~g~~~~a~~~~~~m~~~------g-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~ 312 (453)
+...|...|++++|...+.+..+. . ......++..+...|...|++++|...+++..+. +-.| ...
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 999999999999999999988764 1 1223567788888999999999999999988764 1123 245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCc-CHHHHHHHHHHHHhcCCHHHHHH------HHHHHHHCCCC
Q 039177 313 TYNTLLQALCKVRELNRLRELVKEMKWK-------GIVL-NLQTYSIMIDGLASKGDIIEACG------LLEEALNKGLC 378 (453)
Q Consensus 313 ~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~p-~~~~~~~li~~~~~~g~~~~A~~------~~~~m~~~~~~ 378 (453)
++..+...|...|++++|..+++++.+. ...+ ....|..+...+...+....+.. .++.... ...
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 249 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSP 249 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCH
Confidence 7888899999999999999999988763 1111 22334444444443333332222 2221110 112
Q ss_pred CChhhHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 039177 379 TQSSMFDETICGLCQRGLVRKALELLKQMAD 409 (453)
Q Consensus 379 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (453)
....++..+...|...|++++|..++++..+
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2234678888999999999999999998874
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.23 E-value=1.2e-09 Score=93.34 Aligned_cols=206 Identities=12% Similarity=0.008 Sum_probs=155.4
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 039177 204 FGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYI 283 (453)
Q Consensus 204 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 283 (453)
.|...+......+.+.|++++|++.|++..+....++...+..+..++...|++++|+..|+...+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45678889999999999999999999999987654677888889999999999999999999998864 23567788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHH
Q 039177 284 NGLCKQNNVEAGIKMIACMEELGSKPDV-------ITYNTLLQALCKVRELNRLRELVKEMKWKGIVLN---LQTYSIMI 353 (453)
Q Consensus 284 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~li 353 (453)
..|...|++++|...++...+.... +. ..|..+...+...|++++|...|+...+. .|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 9999999999999999999885421 34 45777888889999999999999999886 343 45677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 039177 354 DGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADKDVSPGARVWEALL 423 (453)
Q Consensus 354 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 423 (453)
.+|...| ..+++++...+ ..+...|.... ....+.+++|+..+++..+ +.|+......++
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~~~~~~l 220 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNRTEIKQMQ 220 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 7776544 34455555443 22334444333 3345678999999999884 456654444333
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.20 E-value=5.5e-09 Score=96.70 Aligned_cols=222 Identities=9% Similarity=-0.057 Sum_probs=166.1
Q ss_pred CCcHHHHHHHHHHHHHCCC-cc----ChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcC-----CCc-ChhhHHHHHHH
Q 039177 147 INRVGFAIEILNCMINDGF-CV----DGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLG-----FCF-GMVDYTNVIRS 215 (453)
Q Consensus 147 ~~~~~~a~~~~~~m~~~~~-~p----~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g-----~~~-~~~~~~~li~~ 215 (453)
.|++++|+..|+....... .+ ...++..+...+...|+. +.|...+.+..+.. ..+ ...+++.+...
T Consensus 114 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 114 QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQT--HVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 6778888888887775311 12 235788888899999998 99999988876541 111 24568899999
Q ss_pred HHhcCChhHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCChhhHHHHHHH
Q 039177 216 LVKKEKVFDALGILNQMKSD----GIK-PDIVCYTMVLNGVIVQEDYVKAEELFDELLV-----LGLVPDVYTYNVYING 285 (453)
Q Consensus 216 ~~~~g~~~~a~~~~~~m~~~----~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~~~li~~ 285 (453)
|...|++++|++.|++..+. +.. ....++..+..+|...|++++|...+++..+ .. +....++..+...
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~ 270 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWT 270 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHH
Confidence 99999999999999988752 111 1235778888999999999999999999876 33 2336678888999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHH
Q 039177 286 LCKQNNVEAGIKMIACMEELGS---KPD-VITYNTLLQALCKVRE---LNRLRELVKEMKWKGIVLN-LQTYSIMIDGLA 357 (453)
Q Consensus 286 ~~~~~~~~~a~~~~~~m~~~~~---~p~-~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~ 357 (453)
|.+.|++++|...++...+... .+. ...+..+...|...++ +.+|...++. .+..++ ...+..+...|.
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHH
Confidence 9999999999999999886421 122 3456667777778888 7777777765 333222 346678899999
Q ss_pred hcCCHHHHHHHHHHHHH
Q 039177 358 SKGDIIEACGLLEEALN 374 (453)
Q Consensus 358 ~~g~~~~A~~~~~~m~~ 374 (453)
..|++++|...|++..+
T Consensus 348 ~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 99999999999998764
No 84
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.18 E-value=7.9e-08 Score=94.66 Aligned_cols=377 Identities=10% Similarity=0.019 Sum_probs=232.2
Q ss_pred cchHHHHHHHhhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC---hhHHHH
Q 039177 61 PHILSSLLHSFSIYNCEPPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHR---FQDSVN 137 (453)
Q Consensus 61 ~~~~~~ll~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~ 137 (453)
.+.+..+-+.+.. -+-|...|..++..+.+.+.++.+..+|+.+... +|.....|...+..-.+.|. ++.+..
T Consensus 49 ~d~i~~lE~~l~~--np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 49 SDVIGKLNDMIEE--QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp SCHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred HHHHHHHHHHHHH--CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3344444333333 2468899999999999999999999999999987 57788899999999999998 999999
Q ss_pred HHhhcccCC------------------CCc--------HHHHHHHHHHHHH-CCC-ccC-hHhHHHHHHHHHh-------
Q 039177 138 LFYKIPKFR------------------INR--------VGFAIEILNCMIN-DGF-CVD-GKTCSLILSSVCE------- 181 (453)
Q Consensus 138 ~~~~~~~~~------------------~~~--------~~~a~~~~~~m~~-~~~-~p~-~~~~~~ll~~~~~------- 181 (453)
+|++..... .+. .+...++|+..+. .|. .++ ...|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 999865532 111 1233466666554 465 554 4567666654432
Q ss_pred --cCCCChHHHHHHHHHHHHcCCCcChhhHH---HHHHHHH----------hcCChhHH---------------------
Q 039177 182 --QRDLSSDELLGFVQEMKKLGFCFGMVDYT---NVIRSLV----------KKEKVFDA--------------------- 225 (453)
Q Consensus 182 --~~~~~~~~a~~~~~~~~~~g~~~~~~~~~---~li~~~~----------~~g~~~~a--------------------- 225 (453)
.++. +.+..+|+.........-..+|. .....+. ...+++.|
T Consensus 205 eeq~~~--~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~ 282 (679)
T 4e6h_A 205 EEQQRV--QYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPIT 282 (679)
T ss_dssp HHHHHH--HHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSS
T ss_pred HHHhHH--HHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccc
Confidence 1223 55666776666421110111121 1110000 00011112
Q ss_pred ----------------------------------------------HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 039177 226 ----------------------------------------------LGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVK 259 (453)
Q Consensus 226 ----------------------------------------------~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 259 (453)
..+|++...... -+...|-..+.-+...|+.++
T Consensus 283 ~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~ 361 (679)
T 4e6h_A 283 LNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDST 361 (679)
T ss_dssp STTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTT
T ss_pred cccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHH
Confidence 223333332211 133444445555556788888
Q ss_pred HH-HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------CCCC------------HHHHHHH
Q 039177 260 AE-ELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELG---------SKPD------------VITYNTL 317 (453)
Q Consensus 260 a~-~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---------~~p~------------~~~~~~l 317 (453)
|. .+|+..... ++.+...|-..+....+.|+++.|.++|+.+.+.. ..|+ ..+|...
T Consensus 362 a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y 440 (679)
T 4e6h_A 362 VITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVY 440 (679)
T ss_dssp HHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHH
Confidence 86 888888763 33456667778888888999999999999887631 0132 2367777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCC
Q 039177 318 LQALCKVRELNRLRELVKEMKWK-GIVLNLQTYSIMIDGLASK-GDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRG 395 (453)
Q Consensus 318 i~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 395 (453)
+....+.|+++.|..+|....+. +.. ....|...+..-.+. ++.+.|.++|+...+. ..-+...+...+......|
T Consensus 441 ~~~erR~~~l~~AR~vf~~A~~~~~~~-~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~ 518 (679)
T 4e6h_A 441 MNTMKRIQGLAASRKIFGKCRRLKKLV-TPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVN 518 (679)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHTGGGS-CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCC
Confidence 88888889999999999999876 222 333444333333444 4589999999988876 3335555667777777889
Q ss_pred CHHHHHHHHHHHhhCCCCC--CHHHHHHHHhc--hhcchhhHHHHHHHHHHhhhcC
Q 039177 396 LVRKALELLKQMADKDVSP--GARVWEALLLS--SVSKLDFVNTSFIRLVDQILNT 447 (453)
Q Consensus 396 ~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~a--~~~~~~~~~~~~~~~~~~~~~~ 447 (453)
+.+.|..+|++.....-.+ ....|...+.- -.+..+.+.....++.+..+++
T Consensus 519 ~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 519 EESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp CHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999988653222 22344444432 2344444555566766666554
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.18 E-value=6.7e-09 Score=88.66 Aligned_cols=196 Identities=10% Similarity=-0.038 Sum_probs=155.0
Q ss_pred cChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 039177 167 VDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTM 246 (453)
Q Consensus 167 p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 246 (453)
.|+..+......+...|++ ++|...|+...+...+++...+..+..++...|++++|++.|++..+.... +...|..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNY--AVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCH--HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHH
Confidence 4667888889999999999 999999999998874367788888999999999999999999999987554 6788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHH
Q 039177 247 VLNGVIVQEDYVKAEELFDELLVLGLVPDV-------YTYNVYINGLCKQNNVEAGIKMIACMEELGSKPD---VITYNT 316 (453)
Q Consensus 247 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ 316 (453)
+..++...|++++|+..+++..+.. +.+. ..|..+...+...|++++|.+.|+...+. .|+ ...+..
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~ 158 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHH
Confidence 9999999999999999999998854 2234 45777888899999999999999999985 465 356777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039177 317 LLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKG 376 (453)
Q Consensus 317 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 376 (453)
+..+|... +..+++.+...+.. +...|..... ...+.+++|...|++..+..
T Consensus 159 l~~~~~~~-----~~~~~~~a~~~~~~-~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 159 LGVLFYNN-----GADVLRKATPLASS-NKEKYASEKA--KADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHH-----HHHHHHHHGGGTTT-CHHHHHHHHH--HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH-----HHHHHHHHHhcccC-CHHHHHHHHH--HHHHHHHHHHHHHHHHhhcC
Confidence 77777544 44455555555333 4455544443 34567899999999998764
No 86
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.14 E-value=1.9e-07 Score=91.93 Aligned_cols=360 Identities=12% Similarity=0.043 Sum_probs=242.2
Q ss_pred cchHHHHHHHhhhcC-CCCChhhHHHHHHHHHhcCCc--------chHHHHHHHHHHcCCC-CC-CHHHHHHHHHHHHh-
Q 039177 61 PHILSSLLHSFSIYN-CEPPPEAYHFVIKTLAENSQF--------CDISSVLDHIEKRENF-ET-PEFIFIDLIKTYAD- 128 (453)
Q Consensus 61 ~~~~~~ll~~~~~~~-~~p~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~~~~~-~~-~~~~~~~li~~~~~- 128 (453)
...+..+++.+.... .+|++..|...+.-..+.++. +.+.++|+.....-|. .+ +..+|...+.....
T Consensus 119 ~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~ 198 (679)
T 4e6h_A 119 AAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHW 198 (679)
T ss_dssp HHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhc
Confidence 566677776664433 358888998888777666654 3345788887776565 44 45789888877543
Q ss_pred --------cCChhHHHHHHhhcccCCCCcHHH------------------------------HHHHHHHHHH--CCCc--
Q 039177 129 --------AHRFQDSVNLFYKIPKFRINRVGF------------------------------AIEILNCMIN--DGFC-- 166 (453)
Q Consensus 129 --------~g~~~~A~~~~~~~~~~~~~~~~~------------------------------a~~~~~~m~~--~~~~-- 166 (453)
.++++.++.+|++.........+. |...+.++.. .++.
T Consensus 199 ~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~ 278 (679)
T 4e6h_A 199 KPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRN 278 (679)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred cccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhc
Confidence 445788999999877654222222 2222222211 1110
Q ss_pred -cC--------------------hHhHHHHHHHHHhcCC-CC----hHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcC
Q 039177 167 -VD--------------------GKTCSLILSSVCEQRD-LS----SDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKE 220 (453)
Q Consensus 167 -p~--------------------~~~~~~ll~~~~~~~~-~~----~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 220 (453)
|. ...|...+.---..+. ++ .+.+..+|+++...- +-....|-..+..+.+.|
T Consensus 279 ~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~ 357 (679)
T 4e6h_A 279 LPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKN 357 (679)
T ss_dssp CCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHS
T ss_pred cccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcC
Confidence 00 0233344432222110 10 123455677766653 456778888888888999
Q ss_pred ChhHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------CCCC------------hhh
Q 039177 221 KVFDAL-GILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLG---------LVPD------------VYT 278 (453)
Q Consensus 221 ~~~~a~-~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g---------~~~~------------~~~ 278 (453)
+.++|. ++|++.... ++.+...|-..+...-+.|+++.|.++|+.+++.. ..|+ ...
T Consensus 358 ~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~v 436 (679)
T 4e6h_A 358 TDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYV 436 (679)
T ss_dssp CCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHH
Confidence 999997 999999874 33466677788888899999999999999987631 0132 346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 039177 279 YNVYINGLCKQNNVEAGIKMIACMEEL-GSKPDVITYNTLLQALCKV-RELNRLRELVKEMKWKGIVLNLQTYSIMIDGL 356 (453)
Q Consensus 279 ~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 356 (453)
|...+....+.|..+.|..+|....+. +. .....|...+..-.+. ++.+.|..+|+..++.-. -+...|...++..
T Consensus 437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p-~~~~~w~~y~~fe 514 (679)
T 4e6h_A 437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA-TDGEYINKYLDFL 514 (679)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-CchHHHHHHHHHH
Confidence 888888888899999999999999875 21 1233343333333344 459999999999998732 2667778888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHhch
Q 039177 357 ASKGDIIEACGLLEEALNKGLCT--QSSMFDETICGLCQRGLVRKALELLKQMADKDVSPGARVWEALLLSS 426 (453)
Q Consensus 357 ~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~ 426 (453)
...|+.+.|..+|+........+ ....|...+..-.+.|+.+.+.++.+++.+. .|+......+..=|
T Consensus 515 ~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 515 IYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 88999999999999998764321 3457888888888999999999999999864 45555555555444
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.10 E-value=3.7e-09 Score=94.08 Aligned_cols=200 Identities=7% Similarity=-0.053 Sum_probs=138.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CC--ChhhHHHH
Q 039177 213 IRSLVKKEKVFDALGILNQMKSD----GIKPD-IVCYTMVLNGVIVQEDYVKAEELFDELLVLGL---VP--DVYTYNVY 282 (453)
Q Consensus 213 i~~~~~~g~~~~a~~~~~~m~~~----~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~---~~--~~~~~~~l 282 (453)
...|...|++++|.+.|++..+. |-.++ ..+|+.+..+|...|++++|+..|++.++... .+ -..+++.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44677788888888888777642 21111 45778888888888888888888887755210 01 13467778
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH------HHHH
Q 039177 283 INGLCKQ-NNVEAGIKMIACMEELGSK-PD----VITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNL------QTYS 350 (453)
Q Consensus 283 i~~~~~~-~~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~ 350 (453)
..+|... |++++|...|++..+.... .+ ..++..+...|.+.|++++|...|+...+....... ..|.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 8888886 9999999999887763211 01 346888899999999999999999999887543222 2577
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh------hhHHHHHHHHH--hCCCHHHHHHHHHHHhhCCCCCCH
Q 039177 351 IMIDGLASKGDIIEACGLLEEALNKGLCTQS------SMFDETICGLC--QRGLVRKALELLKQMADKDVSPGA 416 (453)
Q Consensus 351 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~~p~~ 416 (453)
.+..++...|++++|...|++..+. .|+. ..+..++.+|. ..+++++|+..|+++. .+.|+.
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~--~l~~~~ 273 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM--RLDKWK 273 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS--CCCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC--ccHHHH
Confidence 7888899999999999999988653 2221 12444555664 4567888888887765 344433
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.08 E-value=1.3e-08 Score=78.43 Aligned_cols=126 Identities=15% Similarity=0.100 Sum_probs=58.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 039177 280 NVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASK 359 (453)
Q Consensus 280 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 359 (453)
..+...+...|++++|..+++.+.+... .+...+..+...+...|++++|..+++.+.+.+.. +...+..+...+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHh
Confidence 3344444444444444444444443321 13334444444444455555555555544443322 344444455555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHh
Q 039177 360 GDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMA 408 (453)
Q Consensus 360 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (453)
|++++|.+.++++.+.. ..+...+..+...+.+.|++++|...++++.
T Consensus 83 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 55555555555554432 1233344445555555555555555555544
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.08 E-value=5.2e-08 Score=85.42 Aligned_cols=185 Identities=14% Similarity=0.037 Sum_probs=134.1
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039177 225 ALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGL-VPDVYTYNVYINGLCKQNNVEAGIKMIACME 303 (453)
Q Consensus 225 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 303 (453)
|+..|+++.+.+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 778888887665 34566666888889999999999999998877553 2356777888899999999999999999998
Q ss_pred HCCCCC-----CHHHHHHHHHHHH--hcC--CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 304 ELGSKP-----DVITYNTLLQALC--KVR--ELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALN 374 (453)
Q Consensus 304 ~~~~~p-----~~~~~~~li~~~~--~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 374 (453)
+. .| +..+...|..++. ..| ++.+|..+|+++.+.. |+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 74 45 3566666666633 234 8999999999987663 4433334445588899999999999987655
Q ss_pred CC-----C----CCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHH
Q 039177 375 KG-----L----CTQSSMFDETICGLCQRGLVRKALELLKQMADKDVSPGARV 418 (453)
Q Consensus 375 ~~-----~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 418 (453)
.. . .-+..+...+|......|+ +|.++++++.+ ..|+...
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp~ 288 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHAF 288 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCChH
Confidence 31 0 2345556456666666776 88899999884 4566543
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.07 E-value=1.7e-08 Score=77.63 Aligned_cols=128 Identities=19% Similarity=0.154 Sum_probs=64.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 039177 244 YTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCK 323 (453)
Q Consensus 244 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 323 (453)
|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++.+.+.+. .+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHH
Confidence 3344444444455555555555444432 12334444444455555555555555555544321 234445555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 324 VRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALN 374 (453)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 374 (453)
.|++++|..+++.+.+.... +...+..+...|...|++++|...++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 55555555555555554322 344555555556666666666666655544
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.01 E-value=2.3e-08 Score=87.27 Aligned_cols=168 Identities=8% Similarity=-0.051 Sum_probs=90.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-C-CChhhH
Q 039177 205 GMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPD---IVCYTMVLNGVIVQEDYVKAEELFDELLVLGL-V-PDVYTY 279 (453)
Q Consensus 205 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~-~~~~~~ 279 (453)
+...+..+...+.+.|++++|+..|+++.+..+. + ...+..+..+|.+.|++++|+..|+..++... . .....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3445555566666666666666666666654322 2 44555566666666666666666666665321 0 112334
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCH-HH-----------------HHHHHHHHHhcCCHHHHHHH
Q 039177 280 NVYINGLCK--------QNNVEAGIKMIACMEELGSKPDV-IT-----------------YNTLLQALCKVRELNRLREL 333 (453)
Q Consensus 280 ~~li~~~~~--------~~~~~~a~~~~~~m~~~~~~p~~-~~-----------------~~~li~~~~~~~~~~~a~~~ 333 (453)
..+..++.. .|++++|...|+.+.+.. |+. .. +..+...|.+.|++++|...
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 445555555 666666666666666532 221 11 13344555566666666666
Q ss_pred HHHHHHCCCCc--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHC
Q 039177 334 VKEMKWKGIVL--NLQTYSIMIDGLASK----------GDIIEACGLLEEALNK 375 (453)
Q Consensus 334 ~~~~~~~~~~p--~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~ 375 (453)
|+.+++..+.. ....+..+..+|... |++++|...|+++.+.
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 66655542221 223445555555544 5556666666655554
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.01 E-value=2.3e-08 Score=88.96 Aligned_cols=166 Identities=8% Similarity=-0.015 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCC-C----
Q 039177 207 VDYTNVIRSLVKKEKVFDALGILNQMKSD----GIKP-DIVCYTMVLNGVIVQ-EDYVKAEELFDELLVLGLVP-D---- 275 (453)
Q Consensus 207 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~-g~~~~a~~~~~~m~~~g~~~-~---- 275 (453)
.+|+.+..+|.+.|++++|+..|++..+. |-.. -..++..+...|... |++++|+..|++.++..... +
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 34455555555555555555555544432 1000 023455555556654 66666666666554321000 0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-C---
Q 039177 276 VYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDV------ITYNTLLQALCKVRELNRLRELVKEMKWKGIVL-N--- 345 (453)
Q Consensus 276 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p-~--- 345 (453)
..++..+...|.+.|++++|...|+...+....... ..|..+..++...|++++|...|+...+..... +
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 237 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE 237 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 234555666666666666666666666653322111 144555566666666666666666655432110 1
Q ss_pred HHHHHHHHHHHH--hcCCHHHHHHHHHHH
Q 039177 346 LQTYSIMIDGLA--SKGDIIEACGLLEEA 372 (453)
Q Consensus 346 ~~~~~~li~~~~--~~g~~~~A~~~~~~m 372 (453)
...+..++.+|. ..+++++|+..|+.+
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 112334445553 345566666666554
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.00 E-value=3.3e-08 Score=82.99 Aligned_cols=135 Identities=7% Similarity=-0.115 Sum_probs=91.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 039177 281 VYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKG 360 (453)
Q Consensus 281 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 360 (453)
.+..+|.+.|++++|...|+...+... -+...+..+..+|...|++++|...|+..++..+. +..+|..+...|...|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHh
Confidence 367778888888888888888887542 25677888888888888888888888888887655 6777888877776555
Q ss_pred C--HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 039177 361 D--IIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADKDVSPGARVWEA 421 (453)
Q Consensus 361 ~--~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 421 (453)
+ ...+...++.... ..|....+.....++...|++++|+..|++.. .+.|+......
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al--~l~P~~~~~~~ 195 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVI--LRFPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT--TTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHH--HhCCCHHHHHH
Confidence 3 3344555554432 12222233334555667788899999998888 56787654443
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.96 E-value=1.3e-07 Score=82.82 Aligned_cols=221 Identities=5% Similarity=-0.063 Sum_probs=149.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 039177 209 YTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCK 288 (453)
Q Consensus 209 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 288 (453)
-.-+.++|...|+++.. ....|....+..+.. |...+ |+..|++....+ .++..++..+..++..
T Consensus 48 ~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~ 112 (310)
T 3mv2_B 48 LFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK----NIEELENLLKDK-QNSPYELYLLATAQAI 112 (310)
T ss_dssp HHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 33455777777776642 122344434443333 33322 677888777655 4566666788889999
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-----CHHHHHHHHHHH--HhcC
Q 039177 289 QNNVEAGIKMIACMEELGSK-PDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVL-----NLQTYSIMIDGL--ASKG 360 (453)
Q Consensus 289 ~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p-----~~~~~~~li~~~--~~~g 360 (453)
.|++++|++++...+..+.. -+...+..++..+.+.|+.+.|.+.++.|.+. .| +..+...|..++ ...|
T Consensus 113 ~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g 190 (310)
T 3mv2_B 113 LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATN 190 (310)
T ss_dssp HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhC
Confidence 99999999999998776532 25668889999999999999999999999886 34 356666666663 3334
Q ss_pred --CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhC-----CC---CC-CHHHHHHHHhchhcc
Q 039177 361 --DIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADK-----DV---SP-GARVWEALLLSSVSK 429 (453)
Q Consensus 361 --~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~---~p-~~~~~~~ll~a~~~~ 429 (453)
+..+|..+|+++.+. .|+...-..++.++.+.|++++|.+.++.+.+. .. .| |..++..++......
T Consensus 191 ~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~l 268 (310)
T 3mv2_B 191 KETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQ 268 (310)
T ss_dssp CSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHh
Confidence 899999999999765 344233344455899999999999999987642 11 24 455553554333334
Q ss_pred hhhHHHHHHHHHHhhhcCC
Q 039177 430 LDFVNTSFIRLVDQILNTP 448 (453)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~p 448 (453)
++.+.+.+.++.+.-+++|
T Consensus 269 gk~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 269 GLDTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp TCTTHHHHHHHHHTTCCCH
T ss_pred ChHHHHHHHHHHHhCCCCh
Confidence 4567777777766655544
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.95 E-value=2.2e-08 Score=99.90 Aligned_cols=173 Identities=10% Similarity=-0.028 Sum_probs=131.5
Q ss_pred HhcCChhHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 039177 217 VKKEKVFDALGILNQMK--------SDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCK 288 (453)
Q Consensus 217 ~~~g~~~~a~~~~~~m~--------~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 288 (453)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|+..|++..+.. +.+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67888999999998887 332 2256778888888888999999999998887754 3456778888888889
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 039177 289 QNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGL 368 (453)
Q Consensus 289 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 368 (453)
.|++++|...|++..+.... +...+..+..+|.+.|++++ ...|+...+.+.. +...|..+..+|.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999888875422 45678888888889999998 8889888887655 777888888899999999999999
Q ss_pred HHHHHHCCCCCC-hhhHHHHHHHHHhCCC
Q 039177 369 LEEALNKGLCTQ-SSMFDETICGLCQRGL 396 (453)
Q Consensus 369 ~~~m~~~~~~~~-~~~~~~li~~~~~~g~ 396 (453)
|++..+.+ |+ ...+..+..++...|+
T Consensus 557 ~~~al~l~--P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTS--RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred HHhhcccC--cccHHHHHHHHHHHHccCC
Confidence 98876543 43 4456666666655444
No 96
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.94 E-value=8.6e-07 Score=78.41 Aligned_cols=229 Identities=9% Similarity=0.022 Sum_probs=178.1
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-
Q 039177 175 ILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKE--KVFDALGILNQMKSDGIKPDIVCYTMVLNGV- 251 (453)
Q Consensus 175 ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~- 251 (453)
.+.+..+.+..+ ++|+++++.+.... +-+..+|+.--..+...| +++++++.++.+....++ +..+|+.--..+
T Consensus 38 ~~~a~~~~~e~s-~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~ 114 (306)
T 3dra_A 38 LLLALMKAEEYS-ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIG 114 (306)
T ss_dssp HHHHHHHTTCCS-HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCC-HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHH
Confidence 334445556554 78999999998876 345566888888888888 999999999999987655 666676655555
Q ss_pred ---Hhc---CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 039177 252 ---IVQ---EDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVE--AGIKMIACMEELGSKPDVITYNTLLQALCK 323 (453)
Q Consensus 252 ---~~~---g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 323 (453)
... +++++++.+++.+.+.. +-+-.+|+.-.....+.|.++ ++++.++.+.+.... |...|+.-...+.+
T Consensus 115 ~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~ 192 (306)
T 3dra_A 115 QIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFS 192 (306)
T ss_dssp HHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHS
T ss_pred HHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 555 78999999999998865 457788888777788888887 999999999987643 77778777666777
Q ss_pred cCC------HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCCChhhHHHHHHHHHhC
Q 039177 324 VRE------LNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIE-ACGLLEEALNKG--LCTQSSMFDETICGLCQR 394 (453)
Q Consensus 324 ~~~------~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~ 394 (453)
.+. ++++++.++.++...+. |...|+.+-..+.+.|+... +..+.+++.+.+ -..+...+..+...|.+.
T Consensus 193 l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~ 271 (306)
T 3dra_A 193 KKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQ 271 (306)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHT
T ss_pred ccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcc
Confidence 776 89999999999998777 89999999888888888544 555666655432 134566788888999999
Q ss_pred CCHHHHHHHHHHHhh
Q 039177 395 GLVRKALELLKQMAD 409 (453)
Q Consensus 395 g~~~~A~~~~~~m~~ 409 (453)
|+.++|.++++.+.+
T Consensus 272 ~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 272 KKYNESRTVYDLLKS 286 (306)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999875
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.93 E-value=6.3e-08 Score=81.31 Aligned_cols=166 Identities=11% Similarity=0.013 Sum_probs=110.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 039177 211 NVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTM----------------VLNGVIVQEDYVKAEELFDELLVLGLVP 274 (453)
Q Consensus 211 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~----------------ll~~~~~~g~~~~a~~~~~~m~~~g~~~ 274 (453)
.....+.+.|++++|+..|++..+..+. +...|.. +..+|.+.|++++|+..|++.++.. +.
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~ 86 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PN 86 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CC
Confidence 3445556667777777777776654222 3344444 7788888899999999888888754 34
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCcCHHHHHHH
Q 039177 275 DVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRE--LNRLRELVKEMKWKGIVLNLQTYSIM 352 (453)
Q Consensus 275 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~p~~~~~~~l 352 (453)
+...+..+..+|...|++++|...|++..+... -+...+..+...|...|+ .+.+...+..... ..|....+...
T Consensus 87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~ 163 (208)
T 3urz_A 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRD 163 (208)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHH
Confidence 677788888888889999999999988887542 246677777777765543 3344555544432 22333344445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 039177 353 IDGLASKGDIIEACGLLEEALNKGLCTQSSM 383 (453)
Q Consensus 353 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 383 (453)
..++...|++++|...|++..+. .|+...
T Consensus 164 g~~~~~~~~~~~A~~~~~~al~l--~P~~~~ 192 (208)
T 3urz_A 164 GLSKLFTTRYEKARNSLQKVILR--FPSTEA 192 (208)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence 56667788899999999988764 466544
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.92 E-value=2.5e-07 Score=77.87 Aligned_cols=176 Identities=14% Similarity=-0.005 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 039177 189 ELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQE----DYVKAEELF 264 (453)
Q Consensus 189 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g----~~~~a~~~~ 264 (453)
+|.+.|....+.| +...+..|...|...+++++|++.|++..+.| +...+..|...|.. + ++++|..+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4555666666654 55666667777777777777777777776654 45555566666655 5 677777777
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 039177 265 DELLVLGLVPDVYTYNVYINGLCK----QNNVEAGIKMIACMEELGSK-PDVITYNTLLQALCK----VRELNRLRELVK 335 (453)
Q Consensus 265 ~~m~~~g~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~~~~~~a~~~~~ 335 (453)
+...+.| +...+..+-..|.. .+++++|.+.|+...+.|.. .+...+..|...|.. .+++++|...|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7766643 45555556555655 56677777777766665421 014556666666666 566666666666
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 039177 336 EMKWKGIVLNLQTYSIMIDGLASK-G-----DIIEACGLLEEALNKG 376 (453)
Q Consensus 336 ~~~~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~~ 376 (453)
...+.+ .+...+..|...|... | +.++|...|++..+.|
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 666551 1333455555555442 2 5666666666666555
No 99
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.91 E-value=2.2e-07 Score=78.13 Aligned_cols=179 Identities=14% Similarity=0.035 Sum_probs=146.6
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC----CHHHHHHH
Q 039177 223 FDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQN----NVEAGIKM 298 (453)
Q Consensus 223 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~----~~~~a~~~ 298 (453)
.+|++.|++..+.| +..++..+...|...+++++|+..|++..+.| +...+..+-..|.. + +.++|.+.
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35778888888764 77888889999999999999999999999865 56777778878877 6 89999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 039177 299 IACMEELGSKPDVITYNTLLQALCK----VRELNRLRELVKEMKWKGIV-LNLQTYSIMIDGLAS----KGDIIEACGLL 369 (453)
Q Consensus 299 ~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~~----~g~~~~A~~~~ 369 (453)
|+...+.| +...+..|...|.. .+++++|...|+...+.|.. .+...+..|...|.. .++.++|...|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99998864 67788888888887 88999999999999988642 126788889999988 88999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhC-C-----CHHHHHHHHHHHhhCCCC
Q 039177 370 EEALNKGLCTQSSMFDETICGLCQR-G-----LVRKALELLKQMADKDVS 413 (453)
Q Consensus 370 ~~m~~~~~~~~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~~~~ 413 (453)
++..+.+ .+...+..|...|... | ++++|..+|++..+.|..
T Consensus 153 ~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 153 KGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 9998872 2344566677777654 3 899999999999887654
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.90 E-value=2e-08 Score=100.20 Aligned_cols=174 Identities=11% Similarity=-0.093 Sum_probs=143.5
Q ss_pred HhcCCCChHHHHHHHHHHH--------HcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 039177 180 CEQRDLSSDELLGFVQEMK--------KLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGV 251 (453)
Q Consensus 180 ~~~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 251 (453)
...++. ++|.+.+++.. +.. +.+...+..+...|.+.|++++|++.|++..+.... +...|..+..++
T Consensus 402 ~~~~~~--~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQP--VQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCH--HHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred ccccCH--HHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHH
Confidence 566777 99999999987 332 456778999999999999999999999999986544 778999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 039177 252 IVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLR 331 (453)
Q Consensus 252 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 331 (453)
...|++++|+..|++.++.. +.+...+..+..+|.+.|++++ .+.|++..+... -+...|..+..+|.+.|++++|.
T Consensus 478 ~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998864 2356788889999999999999 999999988642 25678999999999999999999
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 039177 332 ELVKEMKWKGIVLNLQTYSIMIDGLASKGD 361 (453)
Q Consensus 332 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 361 (453)
..|+...+.+.. +...+..+..++...|+
T Consensus 555 ~~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 999988876443 46677788888766555
No 101
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.89 E-value=1.2e-07 Score=82.59 Aligned_cols=171 Identities=11% Similarity=-0.079 Sum_probs=134.0
Q ss_pred ChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcC---hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CCHH
Q 039177 168 DGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFG---MVDYTNVIRSLVKKEKVFDALGILNQMKSDGIK--PDIV 242 (453)
Q Consensus 168 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~ 242 (453)
+...+-.+...+.+.|++ ++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|+..|++..+..+. ....
T Consensus 14 ~~~~~~~~a~~~~~~g~~--~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKY--DRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SHHHHHHHHHHHHHTTCH--HHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 455666777788899999 99999999998875 223 567889999999999999999999999886331 1245
Q ss_pred HHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCC-hhhH-----------------HHHHHHHHhcCCHHHHH
Q 039177 243 CYTMVLNGVIV--------QEDYVKAEELFDELLVLGLVPD-VYTY-----------------NVYINGLCKQNNVEAGI 296 (453)
Q Consensus 243 ~~~~ll~~~~~--------~g~~~~a~~~~~~m~~~g~~~~-~~~~-----------------~~li~~~~~~~~~~~a~ 296 (453)
++..+..++.. .|++++|+..|++.++.. |+ .... ..+...|.+.|++++|.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 67777888888 999999999999998754 33 2333 45577899999999999
Q ss_pred HHHHHHHHCCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCC
Q 039177 297 KMIACMEELGSKP--DVITYNTLLQALCKV----------RELNRLRELVKEMKWKGIV 343 (453)
Q Consensus 297 ~~~~~m~~~~~~p--~~~~~~~li~~~~~~----------~~~~~a~~~~~~~~~~~~~ 343 (453)
..|+.+.+..... ....+..+..+|... |++++|...|+.+.+..+.
T Consensus 169 ~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 169 VTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 9999998754221 235677888888866 8999999999999987443
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.88 E-value=2.5e-08 Score=81.32 Aligned_cols=159 Identities=11% Similarity=0.048 Sum_probs=71.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-HH
Q 039177 209 YTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYING-LC 287 (453)
Q Consensus 209 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~ 287 (453)
+..+...+.+.|++++|+..|++..+..+. +...+..+..++...|++++|+..++...... |+...+...... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 344455555566666666666555543222 44555555556666666666666665554422 222221111101 11
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCCHHHH
Q 039177 288 KQNNVEAGIKMIACMEELGSKP-DVITYNTLLQALCKVRELNRLRELVKEMKWKGIVL-NLQTYSIMIDGLASKGDIIEA 365 (453)
Q Consensus 288 ~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 365 (453)
..+....+...++...+.. | +...+..+...+...|++++|...|+.+.+..+.+ +...+..+...|...|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 1111122344444444422 2 23444444445555555555555555544443321 233444444445555555555
Q ss_pred HHHHHHH
Q 039177 366 CGLLEEA 372 (453)
Q Consensus 366 ~~~~~~m 372 (453)
...|++.
T Consensus 164 ~~~y~~a 170 (176)
T 2r5s_A 164 ASKYRRQ 170 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.88 E-value=9.2e-08 Score=93.62 Aligned_cols=151 Identities=11% Similarity=-0.051 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039177 188 DELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDEL 267 (453)
Q Consensus 188 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 267 (453)
++|.+.+++..+.. +.+...|..+...|.+.|++++|++.|++..+.... +...|..+..+|...|++++|.+.+++.
T Consensus 6 ~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~a 83 (568)
T 2vsy_A 6 PRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVLLQQA 83 (568)
T ss_dssp ----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 56666666655543 234556666666666667777777777666665432 4556666666666667777776666666
Q ss_pred HHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCC
Q 039177 268 LVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKV---RELNRLRELVKEMKWKGI 342 (453)
Q Consensus 268 ~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~~~ 342 (453)
.+.. +.+...+..+..+|.+.|++++|.+.|++..+... .+...+..+...+... |++++|...+++..+.+.
T Consensus 84 l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 84 SDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 6543 23455666666666666666666666666665431 2345566666666666 666666666666666543
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.87 E-value=1.4e-08 Score=80.39 Aligned_cols=138 Identities=11% Similarity=-0.014 Sum_probs=61.1
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 039177 217 VKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGI 296 (453)
Q Consensus 217 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~ 296 (453)
...|++++|+..++........ +...+..+...|.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|++++|.
T Consensus 8 ~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~ 85 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAV 85 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHH
Confidence 3344455555555444332111 22333344445555555555555555554432 123444455555555555555555
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCcCHHHHHHHHHHHHhc
Q 039177 297 KMIACMEELGSKP-DVITYNTLLQALCKVRELNRLREL-VKEMKWKGIVLNLQTYSIMIDGLASK 359 (453)
Q Consensus 297 ~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~-~~~~~~~~~~p~~~~~~~li~~~~~~ 359 (453)
..|+...+.. | +...+..+...|.+.|++++|... ++...+..+. +..+|......+...
T Consensus 86 ~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~ 147 (150)
T 4ga2_A 86 ECYRRSVELN--PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCE 147 (150)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHh
Confidence 5555554432 2 234444455555555554443332 2444443322 334444444433333
No 105
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.87 E-value=3.7e-07 Score=77.58 Aligned_cols=184 Identities=10% Similarity=-0.010 Sum_probs=117.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh----h
Q 039177 205 GMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKP--DIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVY----T 278 (453)
Q Consensus 205 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~----~ 278 (453)
+...+..+...+.+.|++++|+..|+++.+..+.. ....+..+..++.+.|++++|+..|+++.+.. |+.. .
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 34566777888899999999999999998753321 13567778889999999999999999988754 3322 3
Q ss_pred HHHHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 279 YNVYINGLCK------------------QNNVEAGIKMIACMEELGSKPDVI-TYNTLLQALCKVRELNRLRELVKEMKW 339 (453)
Q Consensus 279 ~~~li~~~~~------------------~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~ 339 (453)
+..+..++.+ .|+.++|...|+.+.+.. |+.. .+...... ..+...+
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~~-- 146 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDRL-- 146 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHHH--
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHHH--
Confidence 3334444443 345666666666665532 3221 11111000 0000000
Q ss_pred CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhCCCHHHHHHHHHHHhhC
Q 039177 340 KGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCT--QSSMFDETICGLCQRGLVRKALELLKQMADK 410 (453)
Q Consensus 340 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 410 (453)
......+...|.+.|++++|+..|+++.+..... ....+..+..+|.+.|+.++|.+.++.+...
T Consensus 147 ------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 147 ------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp ------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred ------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 0011345667888899999999999888763211 1245777788899999999999999888754
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.86 E-value=5.6e-08 Score=86.10 Aligned_cols=165 Identities=14% Similarity=0.017 Sum_probs=88.8
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH-
Q 039177 204 FGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVY- 282 (453)
Q Consensus 204 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l- 282 (453)
.+...+..+...+.+.|++++|+..|++..+..+. +...+..+...+...|++++|...++...... |+.......
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHH
Confidence 33444555666666666666666666666654333 45556666666666666666666666654432 332222211
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCC
Q 039177 283 INGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVL-NLQTYSIMIDGLASKGD 361 (453)
Q Consensus 283 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~ 361 (453)
...+.+.++.++|...+++..+... .+...+..+...|...|++++|...|..+.+..... +...+..++..|...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 1124444555555555555555331 134455556666666666666666666665553321 24455556666666666
Q ss_pred HHHHHHHHHHH
Q 039177 362 IIEACGLLEEA 372 (453)
Q Consensus 362 ~~~A~~~~~~m 372 (453)
.++|...+++.
T Consensus 271 ~~~a~~~~r~a 281 (287)
T 3qou_A 271 GDALASXYRRQ 281 (287)
T ss_dssp TCHHHHHHHHH
T ss_pred CCcHHHHHHHH
Confidence 66555555543
No 107
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.86 E-value=4.8e-07 Score=76.90 Aligned_cols=187 Identities=7% Similarity=-0.097 Sum_probs=130.4
Q ss_pred ChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCC-c-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH--HH
Q 039177 168 DGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFC-F-GMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDI--VC 243 (453)
Q Consensus 168 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~-~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~ 243 (453)
+...+..+...+...|+. ++|...|+.+.+.... + ....+..+..+|.+.|++++|+..|+++.+..+.-.. .+
T Consensus 3 ~~~~~~~~a~~~~~~g~~--~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNW--RQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHH
Confidence 344566677788999999 9999999999886411 1 1356888999999999999999999999886443111 24
Q ss_pred HHHHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 244 YTMVLNGVIV------------------QEDYVKAEELFDELLVLGLVPDVY-TYNVYINGLCKQNNVEAGIKMIACMEE 304 (453)
Q Consensus 244 ~~~ll~~~~~------------------~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~ 304 (453)
+..+..++.. .|++++|...|+++++.. |+.. .+.+.... ..+...+.
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~~~- 147 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDRLA- 147 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHHHH-
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHHHH-
Confidence 4445555544 578999999999998853 4433 22221110 01111111
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039177 305 LGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVL--NLQTYSIMIDGLASKGDIIEACGLLEEALNKG 376 (453)
Q Consensus 305 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 376 (453)
.....+...|.+.|++++|...|+.+++..+.. ....+..+..+|.+.|+.++|.+.++.+...+
T Consensus 148 -------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 -------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 112345677888999999999999998874331 12568888899999999999999999887764
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.86 E-value=1.7e-07 Score=83.03 Aligned_cols=167 Identities=14% Similarity=0.013 Sum_probs=119.5
Q ss_pred CCChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHH
Q 039177 77 EPPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEI 156 (453)
Q Consensus 77 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~ 156 (453)
+.+...+..+...+.+.|++++|...|+.+.+.. +.+...+..+...|.+.|++++|+..|+++...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~----------- 180 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ----------- 180 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-----------
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-----------
Confidence 3445566677778888888888888888888774 557778888888888888888888888886542
Q ss_pred HHHHHHCCCccChHhHHHH-HHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 039177 157 LNCMINDGFCVDGKTCSLI-LSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSD 235 (453)
Q Consensus 157 ~~~m~~~~~~p~~~~~~~l-l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 235 (453)
.|+....... ...+...+.. +.+...+++..... +.+...+..+...|...|++++|++.|+++.+.
T Consensus 181 ---------~p~~~~~~~~~~~~l~~~~~~--~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 181 ---------DQDTRYQGLVAQIELLXQAAD--TPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp ---------GCSHHHHHHHHHHHHHHHHTS--CHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------hcchHHHHHHHHHHHHhhccc--CccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 3444322222 2224455555 56777777777665 456777888888888888888888888888776
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039177 236 GIKP-DIVCYTMVLNGVIVQEDYVKAEELFDELL 268 (453)
Q Consensus 236 ~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 268 (453)
.+.. +...+..++..+...|+.++|...|++.+
T Consensus 249 ~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 249 DLTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 4331 25677788888888888888887777654
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.86 E-value=4.5e-08 Score=79.73 Aligned_cols=162 Identities=11% Similarity=-0.041 Sum_probs=124.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H
Q 039177 243 CYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQA-L 321 (453)
Q Consensus 243 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~ 321 (453)
.+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...++...+.. |+...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 34556678889999999999999876643 2457788889999999999999999999987754 454433332222 2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhCCCHHHH
Q 039177 322 CKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCT-QSSMFDETICGLCQRGLVRKA 400 (453)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A 400 (453)
.+.+...+|...++...+..+. +...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 2323334578888888887555 78899999999999999999999999998875332 345788889999999999999
Q ss_pred HHHHHHHh
Q 039177 401 LELLKQMA 408 (453)
Q Consensus 401 ~~~~~~m~ 408 (453)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998765
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.84 E-value=1.9e-07 Score=91.45 Aligned_cols=152 Identities=9% Similarity=-0.080 Sum_probs=73.2
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 039177 220 EKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMI 299 (453)
Q Consensus 220 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~ 299 (453)
|++++|++.|++..+.... +...|..+...+...|++++|.+.|++..+.. +.+...+..+..+|...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp ------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4556666666665544322 45555555666666666666666666655533 223445555555556666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 039177 300 ACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASK---GDIIEACGLLEEALNK 375 (453)
Q Consensus 300 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 375 (453)
++..+... .+...+..+..+|.+.|++++|.+.++...+.... +...+..+...|... |+.++|.+.+++..+.
T Consensus 81 ~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 55555321 13445555555555556666666555555554333 445555555555555 5555555555555544
No 111
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.84 E-value=1.3e-05 Score=76.33 Aligned_cols=330 Identities=11% Similarity=-0.058 Sum_probs=175.8
Q ss_pred CCcchHHHHHHHhhhcCCCCChhhHHHHHHHHHhcCC-cchHHHHHHHHHHcCCC-CCCHHHHHHHHHHHH----hcCCh
Q 039177 59 KQPHILSSLLHSFSIYNCEPPPEAYHFVIKTLAENSQ-FCDISSVLDHIEKRENF-ETPEFIFIDLIKTYA----DAHRF 132 (453)
Q Consensus 59 ~~~~~~~~ll~~~~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~----~~g~~ 132 (453)
++...+..++..+.. ..|+...|...++...+.+. .+....+|+.....-|. +.+..+|...+..+. ..|++
T Consensus 28 ~~~e~~~~iferal~--~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLK--KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHST--TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 456677778877655 34799999998888877663 46678899988876453 346788888888765 34678
Q ss_pred hHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCc------------------------------cChHhHHHHHHHHHhc
Q 039177 133 QDSVNLFYKIPKFRINRVGFAIEILNCMINDGFC------------------------------VDGKTCSLILSSVCEQ 182 (453)
Q Consensus 133 ~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~------------------------------p~~~~~~~ll~~~~~~ 182 (453)
+.+..+|++.........+.-...|..+....-. .+...|...+.--...
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN 185 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence 8899999987665444444443333333321000 0111233333221111
Q ss_pred C-CCC----hHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 039177 183 R-DLS----SDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDY 257 (453)
Q Consensus 183 ~-~~~----~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 257 (453)
+ ... .+.+..+|+++.... +.+...|...+..+.+.|+++.|..+|++.... +.+...|. .|....+.
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~ 258 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDE 258 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTC
T ss_pred CccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcch
Confidence 0 111 123445666655543 344556666666666677777777777777665 22222222 12221111
Q ss_pred HHHHHHHHHHHHCC---------C---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 039177 258 VKAEELFDELLVLG---------L---VPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVR 325 (453)
Q Consensus 258 ~~a~~~~~~m~~~g---------~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 325 (453)
++. ++.+.+.- . ......|...+....+.+..+.|..+|+.. +.. ..+...|......-...+
T Consensus 259 ~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~ 333 (493)
T 2uy1_A 259 EAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYAT 333 (493)
T ss_dssp THH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHH
T ss_pred hHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHC
Confidence 111 22221110 0 001234555555555566677777777766 211 123333332222212222
Q ss_pred -CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHH
Q 039177 326 -ELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELL 404 (453)
Q Consensus 326 -~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 404 (453)
+.+.|..+|+...+.-.. +...|...++...+.|+.+.|..+|+.+. .....|...+..-...|+.+.+..++
T Consensus 334 ~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~ 407 (493)
T 2uy1_A 334 GSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELV 407 (493)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 477777777776665322 33445556666666777777777777651 13455665665555667777777766
Q ss_pred HHHh
Q 039177 405 KQMA 408 (453)
Q Consensus 405 ~~m~ 408 (453)
+++.
T Consensus 408 ~~~~ 411 (493)
T 2uy1_A 408 DQKM 411 (493)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 112
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.80 E-value=3.7e-08 Score=77.87 Aligned_cols=142 Identities=8% Similarity=-0.125 Sum_probs=80.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 039177 250 GVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNR 329 (453)
Q Consensus 250 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 329 (453)
.+...|++++|+..+....... +.+...+-.+...|.+.|++++|.+.|+...+... -+...|..+..+|.+.|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHH
Confidence 3344566666666666554321 11233445566666777777777777776666432 145566666677777777777
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCChhhHHHHHHHHHhCC
Q 039177 330 LRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGL-LEEALNKGLCTQSSMFDETICGLCQRG 395 (453)
Q Consensus 330 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~~~~~~~~~~~li~~~~~~g 395 (453)
|...|+...+..+. +...|..+...|.+.|+.++|.+. +++..+.. +-+..+|......+...|
T Consensus 84 A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 77777776665444 556666666667777766655443 35555543 223344444444444444
No 113
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.79 E-value=1.4e-06 Score=77.36 Aligned_cols=163 Identities=16% Similarity=0.059 Sum_probs=94.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHH
Q 039177 211 NVIRSLVKKEKVFDALGILNQMKSDGI-KPDI----VCYTMVLNGVIVQEDYVKAEELFDELLVLGLV-PD----VYTYN 280 (453)
Q Consensus 211 ~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~ 280 (453)
..+..+...|++++|.+.+++..+... .|+. ..+..+...+...|++++|+..|++..+.... .+ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677788888888888888776422 2221 12233555555666777777777777663222 22 12466
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC-HHHH
Q 039177 281 VYINGLCKQNNVEAGIKMIACMEE----L-GSKPD-VITYNTLLQALCKVRELNRLRELVKEMKWK----GIVLN-LQTY 349 (453)
Q Consensus 281 ~li~~~~~~~~~~~a~~~~~~m~~----~-~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~ 349 (453)
.+...|...|++++|...|+...+ . +..+. ..++..+...|.+.|++++|...++...+. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 677777777777777777776653 1 11111 125566666666777777776666655542 11111 4456
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHH
Q 039177 350 SIMIDGLASKG-DIIEACGLLEEAL 373 (453)
Q Consensus 350 ~~li~~~~~~g-~~~~A~~~~~~m~ 373 (453)
..+..+|.+.| .+++|...+++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 66666666666 3466666665553
No 114
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.72 E-value=5.3e-06 Score=73.52 Aligned_cols=164 Identities=10% Similarity=-0.064 Sum_probs=124.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHH
Q 039177 246 MVLNGVIVQEDYVKAEELFDELLVLGL-VPDV----YTYNVYINGLCKQNNVEAGIKMIACMEELGSK-PD----VITYN 315 (453)
Q Consensus 246 ~ll~~~~~~g~~~~a~~~~~~m~~~g~-~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~ 315 (453)
..+..+...|++++|..+++...+... .++. ..+..+...+...+++++|...|+...+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346778899999999999999887432 2221 12334666677788999999999999874322 22 33789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-----CCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-hhhH
Q 039177 316 TLLQALCKVRELNRLRELVKEMKWK-----GIVLN-LQTYSIMIDGLASKGDIIEACGLLEEALNK----GLCTQ-SSMF 384 (453)
Q Consensus 316 ~li~~~~~~~~~~~a~~~~~~~~~~-----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~ 384 (453)
.+...|...|++++|...|+.+.+. +..+. ..++..+...|.+.|++++|...+++..+. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 9999999999999999999998852 22222 347889999999999999999999987653 22222 5678
Q ss_pred HHHHHHHHhCCC-HHHHHHHHHHHhh
Q 039177 385 DETICGLCQRGL-VRKALELLKQMAD 409 (453)
Q Consensus 385 ~~li~~~~~~g~-~~~A~~~~~~m~~ 409 (453)
..+...|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 888899999994 6999999988764
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.72 E-value=8.7e-07 Score=74.35 Aligned_cols=133 Identities=12% Similarity=-0.080 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 039177 242 VCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQAL 321 (453)
Q Consensus 242 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 321 (453)
..+..+...+...|++++|...|++.. .++...+..+...|...|++++|...|+...+.. ..+...+..+..+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 344556667777788888887777653 4567777777777778888888888877777653 22556777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC--------------c-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 039177 322 CKVRELNRLRELVKEMKWKGIV--------------L-NLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQS 381 (453)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~~~--------------p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 381 (453)
...|++++|...|+...+.... | ....+..+..+|.+.|++++|...|++..+. .|+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM--KSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc--Cccc
Confidence 7788888888887777775432 1 1256677777777777777777777777654 3554
No 116
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.71 E-value=1.7e-05 Score=70.11 Aligned_cols=226 Identities=8% Similarity=0.008 Sum_probs=140.0
Q ss_pred HHHHhcCCc-chHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCC
Q 039177 88 KTLAENSQF-CDISSVLDHIEKRENFETPEFIFIDLIKTYADAH--RFQDSVNLFYKIPKFRINRVGFAIEILNCMINDG 164 (453)
Q Consensus 88 ~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~ 164 (453)
.+..+.|.+ ++|+.+++.+.... +.+..+|+.--..+...| ++++++.+++.+. ...
T Consensus 40 ~a~~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L------------------~~n 99 (306)
T 3dra_A 40 LALMKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIA------------------LDN 99 (306)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH------------------HHC
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHH------------------HHC
Confidence 344455555 58999999999874 667788999888888888 8888888877743 221
Q ss_pred CccChHhHHHHHHHH----Hhc---CCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChh--HHHHHHHHHHhC
Q 039177 165 FCVDGKTCSLILSSV----CEQ---RDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVF--DALGILNQMKSD 235 (453)
Q Consensus 165 ~~p~~~~~~~ll~~~----~~~---~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~ 235 (453)
+-+..+|+.--..+ ... ++. ++++.+++.+.+.. +-+-.+|+.-...+.+.|.++ ++++.++++.+.
T Consensus 100 -Pk~y~aW~~R~~iL~~~~~~l~~~~~~--~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~ 175 (306)
T 3dra_A 100 -EKNYQIWNYRQLIIGQIMELNNNDFDP--YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT 175 (306)
T ss_dssp -TTCCHHHHHHHHHHHHHHHHTTTCCCT--HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHHHHhccccCCH--HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh
Confidence 22344555443333 333 455 77888888887765 556777777777777777777 888888888776
Q ss_pred CCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--
Q 039177 236 GIKPDIVCYTMVLNGVIVQED------YVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEA-GIKMIACMEELG-- 306 (453)
Q Consensus 236 ~~~~~~~~~~~ll~~~~~~g~------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~~-- 306 (453)
.+. |...|+.-...+.+.+. ++++++.++.++... +-|...|+-.-..+.+.|+... +..+...+.+.+
T Consensus 176 d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 253 (306)
T 3dra_A 176 DLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKD 253 (306)
T ss_dssp CTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGT
T ss_pred CCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCC
Confidence 655 66777766555555554 566666666665543 2455566655555555554322 333444433321
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 307 SKPDVITYNTLLQALCKVRELNRLRELVKEMKW 339 (453)
Q Consensus 307 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 339 (453)
-..+...+..+...|.+.|+.++|.++++.+.+
T Consensus 254 ~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 254 QVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp EESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 112445555555555555555555555555554
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.70 E-value=1.9e-06 Score=72.20 Aligned_cols=132 Identities=11% Similarity=-0.056 Sum_probs=107.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 039177 207 VDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGL 286 (453)
Q Consensus 207 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 286 (453)
..+..+...+...|++++|++.|++.. .|+...|..+..++...|++++|+..|++..+.. +.+...+..+..+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 446677888889999999999998774 4578888999999999999999999999888754 34677888888899
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 039177 287 CKQNNVEAGIKMIACMEELGSK--------------P-DVITYNTLLQALCKVRELNRLRELVKEMKWKGIV 343 (453)
Q Consensus 287 ~~~~~~~~a~~~~~~m~~~~~~--------------p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 343 (453)
...|++++|...|+...+.... | ....+..+..+|.+.|++++|...|+...+....
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 9999999999999998875422 1 1267888888999999999999999998887543
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.68 E-value=6.7e-07 Score=80.01 Aligned_cols=186 Identities=6% Similarity=-0.027 Sum_probs=124.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-ChhhHHHH
Q 039177 213 IRSLVKKEKVFDALGILNQMKSD----GIKP-DIVCYTMVLNGVIVQEDYVKAEELFDELLVL----GLVP-DVYTYNVY 282 (453)
Q Consensus 213 i~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~l 282 (453)
...|...|++++|.+.|.+..+. +-.. -..+|+.+..+|...|++++|+..|++.++. |-.. -..++..+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 122 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45677778888888888777542 1110 1346777778888888888888888876542 1111 13466677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC-HHHHHHH
Q 039177 283 INGLCKQNNVEAGIKMIACMEELGSKP-D----VITYNTLLQALCKVRELNRLRELVKEMKWK----GIVLN-LQTYSIM 352 (453)
Q Consensus 283 i~~~~~~~~~~~a~~~~~~m~~~~~~p-~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~l 352 (453)
...|.. |++++|+..|++..+..... + ..++..+...|.+.|++++|+..|+...+. +..+. ...+..+
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 201 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 777877 99999999888876521110 1 357888888999999999999999988764 22111 2366677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCh------hhHHHHHHHHHhCCCHHHHHHH
Q 039177 353 IDGLASKGDIIEACGLLEEALNKGLCTQS------SMFDETICGLCQRGLVRKALEL 403 (453)
Q Consensus 353 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~ 403 (453)
..++...|++++|...|++.. . .|+. .....++.++ ..|+.+.+.++
T Consensus 202 g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 202 VLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 778888899999999999887 4 2221 1234445555 56777666553
No 119
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.68 E-value=6.4e-07 Score=80.11 Aligned_cols=195 Identities=9% Similarity=-0.053 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039177 188 DELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDEL 267 (453)
Q Consensus 188 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 267 (453)
++|.+++++..+.. +.+ .+...++++.|...|... ...|...|++++|...|.+.
T Consensus 8 ~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 8 SEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHH
Confidence 67777777666542 111 011147788888877765 45678889999999999887
Q ss_pred HHC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C-CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039177 268 LVL----GLVP-DVYTYNVYINGLCKQNNVEAGIKMIACMEELG--S-KPD--VITYNTLLQALCKVRELNRLRELVKEM 337 (453)
Q Consensus 268 ~~~----g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~-~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~ 337 (453)
.+. +-.. -..+|+.+...|.+.|++++|...|++..+.- . .+. ..++..+...|.. |++++|+..|+..
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 652 1111 13477888889999999999999998876531 1 111 3578888889988 9999999999988
Q ss_pred HHCCCC----c-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 039177 338 KWKGIV----L-NLQTYSIMIDGLASKGDIIEACGLLEEALNK----GLCTQ-SSMFDETICGLCQRGLVRKALELLKQM 407 (453)
Q Consensus 338 ~~~~~~----p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (453)
.+.... . ...++..+...|.+.|++++|+..|++..+. +..+. ...+..+...+...|++++|...|++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 764211 1 1467888999999999999999999998764 21111 125666667788889999999999998
Q ss_pred h
Q 039177 408 A 408 (453)
Q Consensus 408 ~ 408 (453)
.
T Consensus 222 l 222 (307)
T 2ifu_A 222 Y 222 (307)
T ss_dssp T
T ss_pred h
Confidence 7
No 120
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.67 E-value=1.2e-05 Score=71.99 Aligned_cols=229 Identities=8% Similarity=0.004 Sum_probs=163.5
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 039177 176 LSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKE-KVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQ 254 (453)
Q Consensus 176 l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 254 (453)
+.+..+.+..+ ++|+++++.+.... +-+..+|+.--..+...| .+++++++++.+....++ +..+|+.-...+.+.
T Consensus 60 ~r~~~~~~e~s-e~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l 136 (349)
T 3q7a_A 60 FRAIAAKEEKS-ERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRI 136 (349)
T ss_dssp HHHHHHTTCCS-HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCC-HHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHh
Confidence 33444444444 78899999888876 445566888777777788 599999999999988766 778888777777776
Q ss_pred -C-CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 039177 255 -E-DYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVE--------AGIKMIACMEELGSKPDVITYNTLLQALCKV 324 (453)
Q Consensus 255 -g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 324 (453)
+ ++++++++++.+++.. .-+-.+|+--.....+.|..+ ++++.++.+.+.... |...|+.....+.+.
T Consensus 137 ~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 137 SPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSR 214 (349)
T ss_dssp CCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTS
T ss_pred cCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 6 8889999999988754 346677766555555555555 888888888886543 777888877777777
Q ss_pred CC-------HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHCC-
Q 039177 325 RE-------LNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDI--------------------IEACGLLEEALNKG- 376 (453)
Q Consensus 325 ~~-------~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m~~~~- 376 (453)
+. ++++++.++.++...+. |...|+-+-..+.+.|+. .....+..++...+
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPL 293 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CC
T ss_pred cccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccc
Confidence 76 68888999888888766 888888877777766653 22333333332221
Q ss_pred ----CCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhC
Q 039177 377 ----LCTQSSMFDETICGLCQRGLVRKALELLKQMADK 410 (453)
Q Consensus 377 ----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 410 (453)
-.++......|+..|...|+.++|.++++.+.++
T Consensus 294 ~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 294 PEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1356667888889999999999999999998643
No 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.65 E-value=6.1e-06 Score=73.11 Aligned_cols=165 Identities=8% Similarity=-0.075 Sum_probs=101.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HHH
Q 039177 244 YTMVLNGVIVQEDYVKAEELFDELLVLGLVPD-----VYTYNVYINGLCKQNNVEAGIKMIACMEELGS---KPD--VIT 313 (453)
Q Consensus 244 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~ 313 (453)
+...+..+...|++++|.+.+....+.....+ ...+..+...+...|++++|...++...+... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 33445555666666666666665555321111 01123344456667777777777777664321 111 346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH---C-CCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-Chh
Q 039177 314 YNTLLQALCKVRELNRLRELVKEMKW---K-GIVL--NLQTYSIMIDGLASKGDIIEACGLLEEALNKG----LCT-QSS 382 (453)
Q Consensus 314 ~~~li~~~~~~~~~~~a~~~~~~~~~---~-~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~-~~~ 382 (453)
++.+...|...|++++|...|+...+ . +..+ ...++..+...|...|++++|...+++..+.. ... -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 77777888888888888888877763 2 1111 12477778888888888888888888765431 111 145
Q ss_pred hHHHHHHHHHhCCCHHHH-HHHHHHHh
Q 039177 383 MFDETICGLCQRGLVRKA-LELLKQMA 408 (453)
Q Consensus 383 ~~~~li~~~~~~g~~~~A-~~~~~~m~ 408 (453)
+|..+...|.+.|++++| ...+++..
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 677777888888888888 66677654
No 122
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.64 E-value=2.8e-06 Score=75.36 Aligned_cols=169 Identities=14% Similarity=-0.014 Sum_probs=127.3
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CC--
Q 039177 206 MVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDI-----VCYTMVLNGVIVQEDYVKAEELFDELLVLGLV---PD-- 275 (453)
Q Consensus 206 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~---~~-- 275 (453)
...+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|+..+.+..+.... +.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 445667788999999999999999988775332111 23344556677889999999999998763221 11
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCc-
Q 039177 276 VYTYNVYINGLCKQNNVEAGIKMIACMEEL-GSKPD-----VITYNTLLQALCKVRELNRLRELVKEMKWKG----IVL- 344 (453)
Q Consensus 276 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~p- 344 (453)
..+++.+...|...|++++|...|++..+. ...|+ ..++..+...|.+.|++++|...++...+.. ...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 347888999999999999999999988731 01122 2588899999999999999999999877542 111
Q ss_pred CHHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 039177 345 NLQTYSIMIDGLASKGDIIEA-CGLLEEALN 374 (453)
Q Consensus 345 ~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 374 (453)
-..+|..+..+|.+.|+.++| ...+++...
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 166889999999999999999 777877653
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.64 E-value=1.9e-06 Score=68.85 Aligned_cols=126 Identities=12% Similarity=0.014 Sum_probs=68.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 039177 279 YNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLAS 358 (453)
Q Consensus 279 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 358 (453)
+..+...+...|++++|...|+...+... .+..++..+...+...|++++|...+....+.... +...+..+..+|..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHH
Confidence 44444555555666666666655554321 13455555666666666666666666666555332 45556666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHH--HHHHHHhCCCHHHHHHHHHHH
Q 039177 359 KGDIIEACGLLEEALNKGLCTQSSMFDE--TICGLCQRGLVRKALELLKQM 407 (453)
Q Consensus 359 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m 407 (453)
.|++++|...|++..+.. ..+...+.. +...+...|++++|+..+...
T Consensus 94 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 666666666666665543 112223322 222355556666666666554
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.61 E-value=1.1e-06 Score=66.97 Aligned_cols=94 Identities=11% Similarity=-0.072 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 039177 313 TYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLC 392 (453)
Q Consensus 313 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 392 (453)
.+......|.+.|++++|+..|++.++..+. +...|..+..+|.+.|++++|+..|++..+.+ +.+...|..+..+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 3444555555555555555555555554433 45555555555555555555555555555543 223444555555555
Q ss_pred hCCCHHHHHHHHHHHh
Q 039177 393 QRGLVRKALELLKQMA 408 (453)
Q Consensus 393 ~~g~~~~A~~~~~~m~ 408 (453)
..|++++|++.|++..
T Consensus 93 ~~~~~~~A~~~~~~al 108 (126)
T 4gco_A 93 AMREWSKAQRAYEDAL 108 (126)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5566666666555555
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.61 E-value=2.8e-06 Score=67.81 Aligned_cols=128 Identities=9% Similarity=-0.022 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 039177 243 CYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALC 322 (453)
Q Consensus 243 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 322 (453)
.+..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|...++...+... .+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 34445555555566666666665555432 22445555555666666666666666666655431 24455666666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHH--HHHHHHHhcCCHHHHHHHHHHHH
Q 039177 323 KVRELNRLRELVKEMKWKGIVLNLQTYS--IMIDGLASKGDIIEACGLLEEAL 373 (453)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~ 373 (453)
..|++++|...|+...+.... +...+. .+...+...|++++|...+....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 667777777776666665333 333332 23333556677777777666543
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.58 E-value=2.9e-06 Score=63.86 Aligned_cols=93 Identities=18% Similarity=0.129 Sum_probs=37.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 039177 280 NVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASK 359 (453)
Q Consensus 280 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 359 (453)
..+...+...|++++|.+.++.+.+.. ..+..++..+...+.+.|++++|..+++.+.+.... +..++..+...|...
T Consensus 13 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 13 YNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHh
Confidence 333333444444444444444433321 112333444444444444444444444444433221 333444444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 039177 360 GDIIEACGLLEEALN 374 (453)
Q Consensus 360 g~~~~A~~~~~~m~~ 374 (453)
|++++|...|+++.+
T Consensus 91 ~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 91 GDYDEAIEYYQKALE 105 (125)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 444444444444433
No 127
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.58 E-value=2.4e-06 Score=73.84 Aligned_cols=198 Identities=10% Similarity=-0.065 Sum_probs=130.7
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------
Q 039177 218 KKEKVFDALGILNQMKSDGIKPDIVCYTMV-------LNGVIVQEDYVKAEELFDELLVLGLVPD--------------- 275 (453)
Q Consensus 218 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l-------l~~~~~~g~~~~a~~~~~~m~~~g~~~~--------------- 275 (453)
..++...|.+.|.++.+..+. ....|..+ ...+...++..+++..+..-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 568888888888888876544 55666666 3444444444444444433332 2221
Q ss_pred -------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--H
Q 039177 276 -------VYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLN--L 346 (453)
Q Consensus 276 -------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~--~ 346 (453)
....-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|....+.. .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1223445667788899999999998887644 544455556668888999999999997554432 111 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 039177 347 QTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQ--SSMFDETICGLCQRGLVRKALELLKQMADKDVSPGARVWEALL 423 (453)
Q Consensus 347 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 423 (453)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++.. ..|+...+..|-
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~~~~~~aL~ 248 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPEPKVAAALK 248 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHHHHHHHh
Confidence 3677788888999999999999998875432143 23455566788889999999999999885 356644444443
No 128
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.58 E-value=3.3e-06 Score=63.51 Aligned_cols=96 Identities=19% Similarity=0.151 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 039177 243 CYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALC 322 (453)
Q Consensus 243 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 322 (453)
.|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. ..+..++..+...|.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 34444444444444444444444444332 1233444444444555555555555555544432 123444455555555
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 039177 323 KVRELNRLRELVKEMKWK 340 (453)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~ 340 (453)
..|++++|...++.+.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 555555555555555544
No 129
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.56 E-value=1e-06 Score=73.23 Aligned_cols=156 Identities=11% Similarity=-0.061 Sum_probs=80.4
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CChhhHHHHHHHHHhcCC
Q 039177 217 VKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVL----GLV-PDVYTYNVYINGLCKQNN 291 (453)
Q Consensus 217 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~~~ 291 (453)
...|++++|.++++.+.. .......++..+...+...|++++|...+++..+. +.. ....++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 345666666664444432 12224556666666666677777777666665441 111 123345555566666666
Q ss_pred HHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-cCHHHHHHHHHHHHhcC
Q 039177 292 VEAGIKMIACMEEL----GSKP--DVITYNTLLQALCKVRELNRLRELVKEMKWK----GIV-LNLQTYSIMIDGLASKG 360 (453)
Q Consensus 292 ~~~a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-p~~~~~~~li~~~~~~g 360 (453)
+++|...+++..+. +-.+ ....+..+...+...|++++|...+++..+. +.. .-..++..+...|...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 66666666655432 1011 1234555566666666666666666655432 110 01223455555666666
Q ss_pred CHHHHHHHHHHHH
Q 039177 361 DIIEACGLLEEAL 373 (453)
Q Consensus 361 ~~~~A~~~~~~m~ 373 (453)
++++|.+.+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6666666665543
No 130
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.55 E-value=1.1e-06 Score=69.08 Aligned_cols=94 Identities=11% Similarity=-0.037 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 039177 313 TYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLC 392 (453)
Q Consensus 313 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 392 (453)
.+..+...+.+.|++++|...|+.+.+..+. +...|..+..+|...|++++|+..|++..+.+ +.+...|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 4444455555555555555555555555433 45555555555555555555555555555543 223344555555555
Q ss_pred hCCCHHHHHHHHHHHh
Q 039177 393 QRGLVRKALELLKQMA 408 (453)
Q Consensus 393 ~~g~~~~A~~~~~~m~ 408 (453)
..|++++|...|++..
T Consensus 116 ~lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 116 RLKAPLKAKECFELVI 131 (151)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 5555555555555555
No 131
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.55 E-value=0.00027 Score=67.31 Aligned_cols=331 Identities=11% Similarity=0.004 Sum_probs=181.5
Q ss_pred CCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHhhcccC-----C------------------CCc
Q 039177 94 SQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHR-FQDSVNLFYKIPKF-----R------------------INR 149 (453)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~-----~------------------~~~ 149 (453)
++++.+..+|+..... .|+..+|...+....+.+. .+....+|+..... . .+.
T Consensus 28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 8899999999999975 5799999999999888774 34455556553321 0 123
Q ss_pred HHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCC-----------hHHHHHHHHHHHHcCCCcChhhHHHHHHHHHh
Q 039177 150 VGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLS-----------SDELLGFVQEMKKLGFCFGMVDYTNVIRSLVK 218 (453)
Q Consensus 150 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~-----------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 218 (453)
.+.+..+|++.+.....--...|......-...+... ...|..+++.+...--..+...|...+..-..
T Consensus 105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~ 184 (493)
T 2uy1_A 105 IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME 184 (493)
T ss_dssp HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence 4456666666655211111112222222111111000 01122222222211000122344444443222
Q ss_pred cC--C-----hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 039177 219 KE--K-----VFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNN 291 (453)
Q Consensus 219 ~g--~-----~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 291 (453)
.+ - .+.+..+|+++....+ .+...|...+.-+.+.|+.+.|..+|++.... |....... .|....+
T Consensus 185 ~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e 257 (493)
T 2uy1_A 185 NGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMD 257 (493)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTT
T ss_pred CCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcc
Confidence 11 1 2345667877776533 35777877788888888999999999988876 43332211 2332221
Q ss_pred HHHHHHHHHHHHHCC---------CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 039177 292 VEAGIKMIACMEELG---------SKP---DVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASK 359 (453)
Q Consensus 292 ~~~a~~~~~~m~~~~---------~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 359 (453)
.++. ++.+.+.- ..+ ....|...+..+.+.++.+.|..+|... +. ...+...|......-...
T Consensus 258 ~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~ 332 (493)
T 2uy1_A 258 EEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYA 332 (493)
T ss_dssp CTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHH
T ss_pred hhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHH
Confidence 1111 22222110 001 1245666677777788899999999998 32 223445554333322233
Q ss_pred C-CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHhc--hhcchhhHHHH
Q 039177 360 G-DIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADKDVSPGARVWEALLLS--SVSKLDFVNTS 436 (453)
Q Consensus 360 g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a--~~~~~~~~~~~ 436 (453)
| +.+.|..+|+...+.. .-+...+...+....+.|+.+.|..+|+... -....|...+.- -.+..+.+.+.
T Consensus 333 ~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v 406 (493)
T 2uy1_A 333 TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFREL 406 (493)
T ss_dssp HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3 6999999999998763 2234455666777788899999999999973 245556655532 23444455555
Q ss_pred HHHHHHhhh
Q 039177 437 FIRLVDQIL 445 (453)
Q Consensus 437 ~~~~~~~~~ 445 (453)
+.+.++.+.
T Consensus 407 ~~~~~~~~~ 415 (493)
T 2uy1_A 407 VDQKMDAIK 415 (493)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 777776554
No 132
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.54 E-value=1.2e-06 Score=72.78 Aligned_cols=157 Identities=11% Similarity=-0.055 Sum_probs=115.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCC
Q 039177 252 IVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEEL----GSKP-DVITYNTLLQALCKVRE 326 (453)
Q Consensus 252 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~ 326 (453)
...|++++|.++++.+.. ........+..+...|...|++++|...+++..+. +..+ ...++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 467999999996655543 22235677888889999999999999999987752 2122 23578888899999999
Q ss_pred HHHHHHHHHHHHHC----CCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCC--hhhHHHHHHHHHhCC
Q 039177 327 LNRLRELVKEMKWK----GIVL--NLQTYSIMIDGLASKGDIIEACGLLEEALNKG---LCTQ--SSMFDETICGLCQRG 395 (453)
Q Consensus 327 ~~~a~~~~~~~~~~----~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~--~~~~~~li~~~~~~g 395 (453)
+++|...+.+..+. +-.+ ....+..+...+...|++++|...+++..... -.+. ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999987764 2121 24567888899999999999999999886431 1111 234577788899999
Q ss_pred CHHHHHHHHHHHhh
Q 039177 396 LVRKALELLKQMAD 409 (453)
Q Consensus 396 ~~~~A~~~~~~m~~ 409 (453)
++++|...+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988764
No 133
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.53 E-value=4.8e-06 Score=63.30 Aligned_cols=93 Identities=12% Similarity=0.007 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 039177 209 YTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCK 288 (453)
Q Consensus 209 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 288 (453)
+......|.+.|++++|++.|++..+..+. +..+|..+..+|.+.|++++|+..|+..++.. +.+...|..+..+|..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 333344444444444444444444333221 33333334444444444444444444333322 1223333333333333
Q ss_pred cCCHHHHHHHHHHHH
Q 039177 289 QNNVEAGIKMIACME 303 (453)
Q Consensus 289 ~~~~~~a~~~~~~m~ 303 (453)
.|++++|.+.|+...
T Consensus 94 ~~~~~~A~~~~~~al 108 (126)
T 4gco_A 94 MREWSKAQRAYEDAL 108 (126)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 444444444333333
No 134
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.51 E-value=4.2e-06 Score=65.82 Aligned_cols=99 Identities=8% Similarity=-0.056 Sum_probs=77.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 039177 276 VYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDG 355 (453)
Q Consensus 276 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 355 (453)
...+..+...+.+.|++++|...|+...+... -+...|..+..+|...|++++|...|+...+..+. +...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence 44566677778888888888888888887542 25677888888888888888888888888887655 66778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCC
Q 039177 356 LASKGDIIEACGLLEEALNKG 376 (453)
Q Consensus 356 ~~~~g~~~~A~~~~~~m~~~~ 376 (453)
|...|++++|...|++..+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 888888888888888887753
No 135
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.51 E-value=4.3e-06 Score=63.47 Aligned_cols=92 Identities=18% Similarity=0.130 Sum_probs=38.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 039177 281 VYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKG 360 (453)
Q Consensus 281 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 360 (453)
.+...+...|++++|...|+...+... .+...+..+...+...|++++|...+....+.... +...+..+...|...|
T Consensus 17 ~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 94 (131)
T 2vyi_A 17 TEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLALSSLN 94 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHHHHhC
Confidence 333334444444444444444433211 12334444444444444444444444444443222 3334444444444444
Q ss_pred CHHHHHHHHHHHHH
Q 039177 361 DIIEACGLLEEALN 374 (453)
Q Consensus 361 ~~~~A~~~~~~m~~ 374 (453)
++++|...|++..+
T Consensus 95 ~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 95 KHVEAVAYYKKALE 108 (131)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 44444444444443
No 136
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.50 E-value=3.8e-06 Score=64.15 Aligned_cols=95 Identities=14% Similarity=0.075 Sum_probs=41.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 039177 278 TYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLA 357 (453)
Q Consensus 278 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 357 (453)
.+..+...+...|++++|...|+...+... .+...+..+...|...|++++|...++...+.... +...+..+..+|.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHHHH
Confidence 333444444444444444444444443221 13334444444444444444444444444443222 3444444444444
Q ss_pred hcCCHHHHHHHHHHHHH
Q 039177 358 SKGDIIEACGLLEEALN 374 (453)
Q Consensus 358 ~~g~~~~A~~~~~~m~~ 374 (453)
..|++++|.+.|++..+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 45555555555544443
No 137
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.50 E-value=3.6e-06 Score=76.25 Aligned_cols=157 Identities=8% Similarity=-0.082 Sum_probs=74.7
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 039177 220 EKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMI 299 (453)
Q Consensus 220 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~ 299 (453)
+++++|++.|+...+..+ -+...|..+...+.+.|++++|+..|++.++.. |+...+ ..+.+.++
T Consensus 127 ~~~~~A~~~~~~a~~~~p-~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~- 191 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKL-EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKA- 191 (336)
T ss_dssp EEEECCCCGGGCCHHHHH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHH-
T ss_pred eecccccchhcCCHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHH-
Confidence 334445444443332211 145677777777888888888888888777643 222000 00000000
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 039177 300 ACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCT 379 (453)
Q Consensus 300 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 379 (453)
.. .....|..+..+|.+.|++++|+..++..++.... +...|..+..+|...|++++|...|++..+.. +.
T Consensus 192 ---~~----~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~ 262 (336)
T 1p5q_A 192 ---QA----LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PN 262 (336)
T ss_dssp ---HH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SS
T ss_pred ---HH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CC
Confidence 00 00234444445555555555555555555444332 44455555555555555555555555554432 12
Q ss_pred ChhhHHHHHHHHHhCCCHHHH
Q 039177 380 QSSMFDETICGLCQRGLVRKA 400 (453)
Q Consensus 380 ~~~~~~~li~~~~~~g~~~~A 400 (453)
+...+..+...+.+.|+.++|
T Consensus 263 ~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 263 NKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555544
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.49 E-value=5.2e-06 Score=63.00 Aligned_cols=96 Identities=10% Similarity=-0.011 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 039177 207 VDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGL 286 (453)
Q Consensus 207 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 286 (453)
..+..+...+...|++++|+..|++..+.... +...+..+..++...|++++|...++...+.. +.+...+..+...|
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 34444455555555555555555554443211 34444444444444555555555544444432 12233344444444
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 039177 287 CKQNNVEAGIKMIACMEE 304 (453)
Q Consensus 287 ~~~~~~~~a~~~~~~m~~ 304 (453)
...|++++|...|+...+
T Consensus 91 ~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHh
Confidence 444444444444444443
No 139
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.48 E-value=4.6e-06 Score=63.67 Aligned_cols=97 Identities=11% Similarity=-0.000 Sum_probs=49.9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 039177 206 MVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYING 285 (453)
Q Consensus 206 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 285 (453)
...|..+...+.+.|++++|++.|++..+.... +...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 344555555555666666666666555544322 44455555555555555555555555554432 1234444444445
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 039177 286 LCKQNNVEAGIKMIACMEE 304 (453)
Q Consensus 286 ~~~~~~~~~a~~~~~~m~~ 304 (453)
|.+.|++++|.+.|+...+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555444
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.47 E-value=1.6e-06 Score=70.41 Aligned_cols=120 Identities=8% Similarity=0.067 Sum_probs=53.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--HH
Q 039177 253 VQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQA-LCKVREL--NR 329 (453)
Q Consensus 253 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~--~~ 329 (453)
..|++++|...++...+.. +.+...|..+...|...|++++|...|+...+... .+...+..+..+ |...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchHH
Confidence 3444555555555544432 12344444555555555555555555555444321 133344444444 4444554 55
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 330 LRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNK 375 (453)
Q Consensus 330 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 375 (453)
|...++.+.+.... +...+..+...|...|++++|...|++..+.
T Consensus 100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 55555555444322 3444444444555555555555555544443
No 141
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.46 E-value=2.5e-06 Score=75.17 Aligned_cols=98 Identities=11% Similarity=-0.066 Sum_probs=64.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 039177 205 GMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYIN 284 (453)
Q Consensus 205 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 284 (453)
+...+..+...+.+.|++++|+..|++..+.... +...|..+..+|.+.|++++|+..++...+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3455666667777777777777777777665332 56666667777777777777777777666543 234556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 039177 285 GLCKQNNVEAGIKMIACMEE 304 (453)
Q Consensus 285 ~~~~~~~~~~a~~~~~~m~~ 304 (453)
+|...|++++|...|+...+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 67777777777777766655
No 142
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.45 E-value=0.00012 Score=65.12 Aligned_cols=222 Identities=9% Similarity=-0.014 Sum_probs=153.9
Q ss_pred HHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCCHHHHHHH
Q 039177 178 SVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEK----------VFDALGILNQMKSDGIKPDIVCYTMV 247 (453)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~~~~l 247 (453)
...+.|..+ ++|+.+++.+.... +-+..+|+.--..+...+. +++++.+++.+....++ +..+|+.-
T Consensus 38 ~~~~~~e~s-~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR 114 (331)
T 3dss_A 38 QKRQAGELD-ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHR 114 (331)
T ss_dssp HHHHTTCCS-HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHcCCCC-HHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 345666665 68888888888765 3344456644444433332 67888888888887655 77888877
Q ss_pred HHHHHhcC--CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 039177 248 LNGVIVQE--DYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNN-VEAGIKMIACMEELGSKPDVITYNTLLQALCKV 324 (453)
Q Consensus 248 l~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 324 (453)
.-.+.+.+ ++++++.+++.+.+.. +-|-.+|+.-.......|. .+++++.+..+.+..+. |...|+.....+.+.
T Consensus 115 ~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 115 CWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHH
T ss_pred HHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHh
Confidence 77777777 4889999999998865 3577788777777778887 58899999888886543 666776665555544
Q ss_pred --------------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCC
Q 039177 325 --------------RELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASK-----------GDIIEACGLLEEALNKGLCT 379 (453)
Q Consensus 325 --------------~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~~~~ 379 (453)
+.++++++.+.......+. |...|+-+--.+.+. +.++++++.++++.+.. |
T Consensus 193 ~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~--p 269 (331)
T 3dss_A 193 HPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE--P 269 (331)
T ss_dssp SCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC--T
T ss_pred hhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC--c
Confidence 4578888999888887766 788887655555554 45788888898888753 4
Q ss_pred ChhhHHHHHH-----HHHhCCCHHHHHHHHHHHh
Q 039177 380 QSSMFDETIC-----GLCQRGLVRKALELLKQMA 408 (453)
Q Consensus 380 ~~~~~~~li~-----~~~~~g~~~~A~~~~~~m~ 408 (453)
+. .|..+.. +....|..+++..++.++.
T Consensus 270 d~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 302 (331)
T 3dss_A 270 EN-KWCLLTIILLMRALDPLLYEKETLQYFSTLK 302 (331)
T ss_dssp TC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHH
T ss_pred cc-chHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 43 2332221 1223566777778888777
No 143
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.45 E-value=1e-06 Score=77.60 Aligned_cols=195 Identities=12% Similarity=-0.035 Sum_probs=132.1
Q ss_pred ChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 039177 168 DGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMV 247 (453)
Q Consensus 168 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 247 (453)
+...+..+...+...|++ ++|...|+...+.. +.+...|..+...|.+.|++++|+..+++..+.... +...+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~--~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 78 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKY--PEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL 78 (281)
T ss_dssp CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 445677778888999999 99999999998875 447788999999999999999999999999987544 77889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 039177 248 LNGVIVQEDYVKAEELFDELLVLGLVPDV-YTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRE 326 (453)
Q Consensus 248 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 326 (453)
..++...|++++|...|+...+.. |+. ..+...+....+. ..+.. +..........+......+... ..|+
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~ 150 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTRL--IAAE 150 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHH
Confidence 999999999999999999887642 211 1111122221111 11111 2222333333444444444332 2688
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHC
Q 039177 327 LNRLRELVKEMKWKGIVLNLQTYSIMIDGLASK-GDIIEACGLLEEALNK 375 (453)
Q Consensus 327 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~ 375 (453)
+++|.+.++...+.... +......+-..+.+. +.+++|.++|.++.+.
T Consensus 151 ~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 151 RERELEECQRNHEGHED-DGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHTTTSGGGTTTSC-HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHhhhccccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 88998888877765322 333444444445554 6788899999877653
No 144
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.45 E-value=5.6e-06 Score=74.95 Aligned_cols=145 Identities=12% Similarity=-0.111 Sum_probs=81.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 039177 205 GMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYIN 284 (453)
Q Consensus 205 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 284 (453)
+...|..+...|.+.|++++|+..|++..+........ ..+.+..+- . .....|..+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-------------~~~~~~~~~-~-------~~~~~~~nla~ 204 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF-------------SNEEAQKAQ-A-------LRLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC-------------CSHHHHHHH-H-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccC-------------ChHHHHHHH-H-------HHHHHHHHHHH
Confidence 46778999999999999999999999998764332100 001111000 0 01234444555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH
Q 039177 285 GLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIE 364 (453)
Q Consensus 285 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 364 (453)
+|.+.|++++|...++...+... .+...|..+..+|...|++++|...|+..++.... +...+..+..++.+.|+.++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555321 13445555556666666666666666665555433 45555556666666666655
Q ss_pred H-HHHHHHH
Q 039177 365 A-CGLLEEA 372 (453)
Q Consensus 365 A-~~~~~~m 372 (453)
| ..++..|
T Consensus 283 a~~~~~~~~ 291 (336)
T 1p5q_A 283 REKKLYANM 291 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 5 3344444
No 145
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.43 E-value=4.9e-06 Score=67.44 Aligned_cols=120 Identities=13% Similarity=0.057 Sum_probs=61.8
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-HHhcCCH--HH
Q 039177 218 KKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYING-LCKQNNV--EA 294 (453)
Q Consensus 218 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~~~~--~~ 294 (453)
..|++++|+..++...+.... +...|..+...|...|++++|...|+...+.. +.+...+..+..+ |...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 445555666666555544322 44555555556666666666666666555432 1234444445545 4455555 66
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 295 GIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWK 340 (453)
Q Consensus 295 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 340 (453)
|...++...+... .+...+..+...|...|++++|...|+.+.+.
T Consensus 100 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 6666655555321 13445555555566666666666666655554
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.43 E-value=1.6e-06 Score=68.22 Aligned_cols=94 Identities=9% Similarity=-0.115 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 039177 313 TYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLC 392 (453)
Q Consensus 313 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 392 (453)
.+..+...+.+.|++++|...|+........ +...|..+..+|...|++++|+..|++....+ +.+...+..+..+|.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 4445555566666666666666666555433 55555666666666666666666666665543 223344555556666
Q ss_pred hCCCHHHHHHHHHHHh
Q 039177 393 QRGLVRKALELLKQMA 408 (453)
Q Consensus 393 ~~g~~~~A~~~~~~m~ 408 (453)
..|++++|...|++..
T Consensus 101 ~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQ 116 (148)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 6666666666666655
No 147
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.42 E-value=4.9e-06 Score=63.16 Aligned_cols=94 Identities=15% Similarity=0.000 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 039177 313 TYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLC 392 (453)
Q Consensus 313 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 392 (453)
.+..+...+.+.|++++|...|....+.... +...|..+..+|.+.|++++|+..|++..+.+ +.+...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3444444555555555555555555554333 44555555555555555555555555555443 223344555555555
Q ss_pred hCCCHHHHHHHHHHHh
Q 039177 393 QRGLVRKALELLKQMA 408 (453)
Q Consensus 393 ~~g~~~~A~~~~~~m~ 408 (453)
..|++++|...|++..
T Consensus 84 ~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 84 AVKEYASALETLDAAR 99 (126)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHH
Confidence 5555555555555554
No 148
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.41 E-value=0.00023 Score=63.66 Aligned_cols=176 Identities=7% Similarity=-0.068 Sum_probs=115.5
Q ss_pred HHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCccC
Q 039177 90 LAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAH-RFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCVD 168 (453)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 168 (453)
..+....++|+++++.+.... +.+..+|+.--..+...| .+++++.+++.+ +.. .+-+
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~------------------L~~-nPKn 122 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEF------------------AVQ-NLKS 122 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH------------------HHT-TCCC
T ss_pred HHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHH------------------HHh-CCCc
Confidence 334455568999999999874 667778888877777777 477777777663 332 1235
Q ss_pred hHhHHHHHHHHHhc-C-CCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChh--------HHHHHHHHHHhCCCC
Q 039177 169 GKTCSLILSSVCEQ-R-DLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVF--------DALGILNQMKSDGIK 238 (453)
Q Consensus 169 ~~~~~~ll~~~~~~-~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~~~~ 238 (453)
..+|+.-...+... + +. ++++++++.+.+.. +-+..+|+.-...+.+.|.++ ++++.++++.+..+.
T Consensus 123 y~aW~hR~wlL~~l~~~~~--~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~ 199 (349)
T 3q7a_A 123 YQVWHHRLLLLDRISPQDP--VSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR 199 (349)
T ss_dssp HHHHHHHHHHHHHHCCSCC--HHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC
Confidence 55676666655555 5 55 78888888887765 456677776666666655555 777888877776555
Q ss_pred CCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 039177 239 PDIVCYTMVLNGVIVQED-------YVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNN 291 (453)
Q Consensus 239 ~~~~~~~~ll~~~~~~g~-------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 291 (453)
|...|+.....+.+.+. ++++++.+++.+... +-|...|+-+-..+.+.|.
T Consensus 200 -N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 200 -NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp -CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred -CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 77777777666666665 566666666666543 3455666555555554443
No 149
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.40 E-value=7.9e-07 Score=73.80 Aligned_cols=121 Identities=11% Similarity=-0.047 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC--------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039177 242 VCYTMVLNGVIVQEDYVKAEELFDELLVLGLV-PD--------------VYTYNVYINGLCKQNNVEAGIKMIACMEELG 306 (453)
Q Consensus 242 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~--------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 306 (453)
..+..+...+...|++++|...|++..+.... ++ ...+..+..+|.+.|++++|...++...+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34455555666666666666666666553211 10 1333444444444444444444444444422
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH
Q 039177 307 SKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIE 364 (453)
Q Consensus 307 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 364 (453)
. .+...+..+..+|...|++++|...|+...+.... +...+..+..++...++.++
T Consensus 119 p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 119 K-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARK 174 (198)
T ss_dssp T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC
T ss_pred c-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHH
Confidence 1 12334444444444444444444444444443222 33344444444443333333
No 150
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.38 E-value=2.5e-05 Score=67.55 Aligned_cols=185 Identities=12% Similarity=-0.020 Sum_probs=121.7
Q ss_pred cCCCChHHHHHHHHHHHHcCCCcChhhHHHH-------HHHHHhcCChhHHHHHHHHHHhCCCCCC--------------
Q 039177 182 QRDLSSDELLGFVQEMKKLGFCFGMVDYTNV-------IRSLVKKEKVFDALGILNQMKSDGIKPD-------------- 240 (453)
Q Consensus 182 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~~~~~~~~-------------- 240 (453)
.++. ..|.+.|.++.+.. +-....|..+ ...+.+.++..+++..+..-.+. .|+
T Consensus 19 ~~d~--~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 19 PMSE--ARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTCH--HHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCC
T ss_pred CCCH--HHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCcccc
Confidence 4444 77788887777765 3345566666 45555555556665555554441 111
Q ss_pred --------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-
Q 039177 241 --------IVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDV- 311 (453)
Q Consensus 241 --------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~- 311 (453)
...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+. |+.
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d~~ 168 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW---PDKF 168 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC---SCHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc---CCcc
Confidence 1223345566777888888888888776543 44335555555788888888888888755442 222
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039177 312 ---ITYNTLLQALCKVRELNRLRELVKEMKWKGIVLN--LQTYSIMIDGLASKGDIIEACGLLEEALNKG 376 (453)
Q Consensus 312 ---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 376 (453)
..+..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++...+
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3567777888888888888888888875433243 3356667777788888888888888887764
No 151
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.37 E-value=2.3e-06 Score=67.21 Aligned_cols=98 Identities=11% Similarity=-0.074 Sum_probs=65.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 039177 276 VYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDG 355 (453)
Q Consensus 276 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 355 (453)
...+..+...+.+.|++++|...|+....... .+...|..+..+|...|++++|...|+........ +...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 34455556666777777777777777666432 25556666777777777777777777777666444 55666677777
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 039177 356 LASKGDIIEACGLLEEALNK 375 (453)
Q Consensus 356 ~~~~g~~~~A~~~~~~m~~~ 375 (453)
|...|++++|...|++..+.
T Consensus 99 ~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777776654
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.36 E-value=1.5e-05 Score=59.05 Aligned_cols=94 Identities=13% Similarity=-0.038 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 039177 313 TYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLC 392 (453)
Q Consensus 313 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 392 (453)
.+..+...+...|++++|...++...+.... +...+..+...|...|++++|...+++..+.. +.+...+..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3444444445555555555555555444322 34444555555555555555555555554432 123344444455555
Q ss_pred hCCCHHHHHHHHHHHh
Q 039177 393 QRGLVRKALELLKQMA 408 (453)
Q Consensus 393 ~~g~~~~A~~~~~~m~ 408 (453)
..|++++|...+++..
T Consensus 84 ~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH
Confidence 5555555555555554
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.35 E-value=6.3e-06 Score=62.75 Aligned_cols=104 Identities=10% Similarity=0.043 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----hhhHHH
Q 039177 313 TYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGL--CTQ----SSMFDE 386 (453)
Q Consensus 313 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~----~~~~~~ 386 (453)
.+..+...+.+.|++++|+..|+..++..+. +...|..+..+|.+.|++++|++.+++..+.+. ..+ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3445555566666666666666666555433 455566666666666666666666665554310 111 123445
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHH
Q 039177 387 TICGLCQRGLVRKALELLKQMADKDVSPGARVW 419 (453)
Q Consensus 387 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 419 (453)
+...+...|++++|++.|++... ..||..+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~ 119 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS--EFRDPELV 119 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHH
Confidence 55566666666666666666553 24454433
No 154
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.35 E-value=4.2e-06 Score=65.13 Aligned_cols=94 Identities=7% Similarity=-0.123 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 039177 313 TYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLC 392 (453)
Q Consensus 313 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 392 (453)
.+..+...+.+.|++++|...|+......+. +...|..+..+|...|++++|...|++....+ +.+...+..+..+|.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 3344445555555666666665555554433 45555555555555666666666665555543 223344455555555
Q ss_pred hCCCHHHHHHHHHHHh
Q 039177 393 QRGLVRKALELLKQMA 408 (453)
Q Consensus 393 ~~g~~~~A~~~~~~m~ 408 (453)
..|++++|...|++..
T Consensus 98 ~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 98 QLGDLDGAESGFYSAR 113 (142)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 6666666666655554
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.33 E-value=1.8e-05 Score=59.95 Aligned_cols=95 Identities=8% Similarity=0.002 Sum_probs=49.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 039177 208 DYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLC 287 (453)
Q Consensus 208 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 287 (453)
.|..+...+.+.|++++|+..|++..+.... +...|..+..++.+.|++++|+..++..++.. +.+...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3444555555555555555555555544322 44555555555555555555555555555432 123444445555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 039177 288 KQNNVEAGIKMIACMEE 304 (453)
Q Consensus 288 ~~~~~~~a~~~~~~m~~ 304 (453)
..|++++|...|+...+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55555555555555444
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.32 E-value=4.4e-05 Score=56.49 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=6.6
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 039177 319 QALCKVRELNRLRELVKE 336 (453)
Q Consensus 319 ~~~~~~~~~~~a~~~~~~ 336 (453)
.+|...|++++|...++.
T Consensus 80 ~~~~~~~~~~~A~~~~~~ 97 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEE 97 (118)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHH
Confidence 333333333333333333
No 157
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.31 E-value=6.6e-06 Score=65.80 Aligned_cols=98 Identities=9% Similarity=-0.034 Sum_probs=60.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 039177 276 VYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDG 355 (453)
Q Consensus 276 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 355 (453)
...+..+...+.+.|++++|...|+...+... -+...|..+..+|.+.|++++|+..|+..++.... +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 44555556666666666666666666665431 14556666666666666666666666666665443 45566666666
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 039177 356 LASKGDIIEACGLLEEALNK 375 (453)
Q Consensus 356 ~~~~g~~~~A~~~~~~m~~~ 375 (453)
|...|++++|...|++..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 66666666666666666554
No 158
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.29 E-value=7.2e-05 Score=70.10 Aligned_cols=165 Identities=9% Similarity=-0.084 Sum_probs=70.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-hhh
Q 039177 209 YTNVIRSLVKKEKVFDALGILNQMKSDG-IKPDIV----CYTMVLNGVIVQEDYVKAEELFDELLV----LGLVPD-VYT 278 (453)
Q Consensus 209 ~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~----~~~~ll~~~~~~g~~~~a~~~~~~m~~----~g~~~~-~~~ 278 (453)
+..+...|.+.|++++|.+++..+...- ..++.. +.+.+-..+...|+.+.|..++..... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4455555555566666555555554320 011111 111111222233555555555554432 111111 223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC-Cc-C--HH
Q 039177 279 YNVYINGLCKQNNVEAGIKMIACMEEL----GSKPD-VITYNTLLQALCKVRELNRLRELVKEMKWK--GI-VL-N--LQ 347 (453)
Q Consensus 279 ~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~-~p-~--~~ 347 (453)
+..+...|...|++++|..+++.+... +-.+. ..++..++..|...|++++|..+++..... .. .| . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 444555555555555555555544321 11111 234555555555555555555555544432 01 11 0 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039177 348 TYSIMIDGLASKGDIIEACGLLEEAL 373 (453)
Q Consensus 348 ~~~~li~~~~~~g~~~~A~~~~~~m~ 373 (453)
.+..+...+...|++++|...|.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33444444445555555555555443
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.29 E-value=1.4e-05 Score=60.74 Aligned_cols=97 Identities=10% Similarity=0.081 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----hhhHH
Q 039177 207 VDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGL--VPD----VYTYN 280 (453)
Q Consensus 207 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~--~~~----~~~~~ 280 (453)
..+..+...+.+.|++++|++.|++..+..+. +...|..+..+|...|++++|++.++..++... ..+ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 34556666677777777777777776665433 556666666667777777777776666654210 011 12344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 281 VYINGLCKQNNVEAGIKMIACMEE 304 (453)
Q Consensus 281 ~li~~~~~~~~~~~a~~~~~~m~~ 304 (453)
.+..++...|++++|++.|+...+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445555556666666666655554
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.29 E-value=2.7e-05 Score=59.78 Aligned_cols=96 Identities=8% Similarity=-0.162 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 039177 311 VITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICG 390 (453)
Q Consensus 311 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 390 (453)
...+..+...+...|++++|...|....+.... +...|..+..+|...|++++|...+++..+.+ +.+...+..+...
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 344444555555555555555555555444332 34455555555555555555555555554433 2233444445555
Q ss_pred HHhCCCHHHHHHHHHHHh
Q 039177 391 LCQRGLVRKALELLKQMA 408 (453)
Q Consensus 391 ~~~~g~~~~A~~~~~~m~ 408 (453)
|...|++++|...|++..
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 555555555555555544
No 161
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.28 E-value=2e-05 Score=65.17 Aligned_cols=156 Identities=12% Similarity=-0.051 Sum_probs=95.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------HHHH
Q 039177 250 GVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPD---------------VITY 314 (453)
Q Consensus 250 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---------------~~~~ 314 (453)
.....|+++.+.+.|+.-.... ......+..+...+.+.|++++|...|+...+....-. ...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ---------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 3334455555555544221110 11244566677788899999999999998887432111 2677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhC
Q 039177 315 NTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQR 394 (453)
Q Consensus 315 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 394 (453)
..+..+|.+.|++++|...++...+.... +...+..+..+|...|++++|...|++..+.. +.+...+..+...+...
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHH
Confidence 77888888888888888888888877544 67788888888888888888888888887764 23455666666666666
Q ss_pred CCHHHHH-HHHHHHh
Q 039177 395 GLVRKAL-ELLKQMA 408 (453)
Q Consensus 395 g~~~~A~-~~~~~m~ 408 (453)
|+.+++. ..+..|.
T Consensus 170 ~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 170 KEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHC----------
T ss_pred HHHHHHHHHHHHHHh
Confidence 6666655 4444444
No 162
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.25 E-value=1.4e-05 Score=60.20 Aligned_cols=89 Identities=11% Similarity=-0.082 Sum_probs=41.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCH
Q 039177 318 LQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLV 397 (453)
Q Consensus 318 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 397 (453)
...+.+.|++++|...|+...+.... +...|..+..++...|++++|+..|++..+.+ +.+...+..+...|.+.|++
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 33444445555555555544444332 44444444445555555555555555444432 12233444444445555555
Q ss_pred HHHHHHHHHHh
Q 039177 398 RKALELLKQMA 408 (453)
Q Consensus 398 ~~A~~~~~~m~ 408 (453)
++|+..+++..
T Consensus 102 ~~A~~~~~~al 112 (121)
T 1hxi_A 102 NAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 163
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.24 E-value=1.7e-05 Score=58.17 Aligned_cols=96 Identities=7% Similarity=-0.024 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHHH
Q 039177 207 VDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVP--DVYTYNVYIN 284 (453)
Q Consensus 207 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li~ 284 (453)
..+..+...+...|++++|+..|++..+.... +...|..+..++...|++++|...+++..+.. +. +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 33444445555555555555555555443222 33444444444555555555555555444432 11 2334444444
Q ss_pred HHHhc-CCHHHHHHHHHHHHH
Q 039177 285 GLCKQ-NNVEAGIKMIACMEE 304 (453)
Q Consensus 285 ~~~~~-~~~~~a~~~~~~m~~ 304 (453)
++... |++++|.+.++...+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHhCCHHHHHHHHHHHhh
Confidence 44444 444444444444444
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=5.5e-05 Score=58.74 Aligned_cols=94 Identities=11% Similarity=0.020 Sum_probs=42.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 039177 278 TYNVYINGLCKQNNVEAGIKMIACMEELGSKPD----VITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMI 353 (453)
Q Consensus 278 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li 353 (453)
.+..+...+...|++++|...|+...+. .|+ ...+..+...|...|++++|...++...+.... +...+..+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a 106 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHHHH
Confidence 3344444444444444444444444442 233 234444444444555555555555444443222 344444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 039177 354 DGLASKGDIIEACGLLEEALN 374 (453)
Q Consensus 354 ~~~~~~g~~~~A~~~~~~m~~ 374 (453)
.+|...|++++|...|++..+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 445555555555555554444
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.23 E-value=3.8e-05 Score=61.28 Aligned_cols=99 Identities=10% Similarity=0.048 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039177 240 DIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQ 319 (453)
Q Consensus 240 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 319 (453)
+...|..+...+...|++++|+..|++.++.. +.+...|..+..+|.+.|++++|...|+...+... -+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 44556666666777777777777777766643 23556666666667777777777777777666432 13556666667
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 039177 320 ALCKVRELNRLRELVKEMKWK 340 (453)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~ 340 (453)
+|.+.|++++|...|+...+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 777777777777777766665
No 166
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.23 E-value=2.3e-05 Score=60.82 Aligned_cols=96 Identities=9% Similarity=-0.109 Sum_probs=59.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 039177 278 TYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLA 357 (453)
Q Consensus 278 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 357 (453)
.+..+...+.+.|++++|...|+....... .+...|..+..+|.+.|++++|...|+...+.... +...+..+..+|.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHH
Confidence 334445556666666666666666665432 24555666666666666666676666666665443 4555666666666
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 039177 358 SKGDIIEACGLLEEALNK 375 (453)
Q Consensus 358 ~~g~~~~A~~~~~~m~~~ 375 (453)
..|++++|...|+...+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 677777777776666554
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.22 E-value=4.5e-05 Score=58.53 Aligned_cols=99 Identities=8% Similarity=-0.092 Sum_probs=61.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 039177 275 DVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMID 354 (453)
Q Consensus 275 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 354 (453)
+...+..+...+...|++++|...|+...+... .+...+..+..+|...|++++|...++...+.... +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 445555566666666666666666666655431 23556666666666666666666666666665443 5566666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 039177 355 GLASKGDIIEACGLLEEALNK 375 (453)
Q Consensus 355 ~~~~~g~~~~A~~~~~~m~~~ 375 (453)
+|...|++++|...|++..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 677777777777776666543
No 168
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.22 E-value=1.8e-05 Score=58.04 Aligned_cols=93 Identities=10% Similarity=-0.080 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHHHHH
Q 039177 314 YNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCT--QSSMFDETICGL 391 (453)
Q Consensus 314 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~ 391 (453)
+..+...+.+.|++++|...++...+.... +...+..+...|...|++++|...|++..+.. .. +...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHH
Confidence 334444444555555555555544444322 34444555555555555555555555554432 11 234444455555
Q ss_pred HhC-CCHHHHHHHHHHHh
Q 039177 392 CQR-GLVRKALELLKQMA 408 (453)
Q Consensus 392 ~~~-g~~~~A~~~~~~m~ 408 (453)
... |++++|.+.+++..
T Consensus 87 ~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp TTCSSCSHHHHHHHHHHG
T ss_pred HHHhCCHHHHHHHHHHHh
Confidence 555 55555555555554
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.21 E-value=2.1e-05 Score=59.61 Aligned_cols=96 Identities=13% Similarity=0.084 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----hhhHHH
Q 039177 313 TYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGL--CTQ----SSMFDE 386 (453)
Q Consensus 313 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~----~~~~~~ 386 (453)
.+..+...+...|++++|...|....+.... +...+..+...|...|++++|...+++...... .++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 3444444455555555555555555444322 344455555555555555555555555444311 011 334445
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhh
Q 039177 387 TICGLCQRGLVRKALELLKQMAD 409 (453)
Q Consensus 387 li~~~~~~g~~~~A~~~~~~m~~ 409 (453)
+...|...|++++|.+.|++..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 55555555555555555555553
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.20 E-value=1.7e-05 Score=60.14 Aligned_cols=97 Identities=18% Similarity=0.140 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----hhhHH
Q 039177 207 VDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGL--VPD----VYTYN 280 (453)
Q Consensus 207 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~--~~~----~~~~~ 280 (453)
..|..+...+...|++++|+..|++..+.... +...+..+...+...|++++|...++...+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34555556666666666666666666554322 455555556666666666666666665544321 011 34444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 281 VYINGLCKQNNVEAGIKMIACMEE 304 (453)
Q Consensus 281 ~li~~~~~~~~~~~a~~~~~~m~~ 304 (453)
.+..+|...|++++|.+.|+...+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 555555555555555555555555
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=9.8e-05 Score=57.27 Aligned_cols=97 Identities=16% Similarity=0.009 Sum_probs=48.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 039177 205 GMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPD----IVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYN 280 (453)
Q Consensus 205 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 280 (453)
+...+..+...+.+.|++++|++.|++..+.. |+ ...|..+..+|...|++++|+..++...+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 34445555555555566666666665555432 22 3444445555555555555555555554432 12334444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 281 VYINGLCKQNNVEAGIKMIACMEE 304 (453)
Q Consensus 281 ~li~~~~~~~~~~~a~~~~~~m~~ 304 (453)
.+..+|...|++++|...|+...+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444455555555555555555444
No 172
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.14 E-value=0.0013 Score=58.58 Aligned_cols=193 Identities=10% Similarity=0.035 Sum_probs=144.8
Q ss_pred HhcCChh-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 039177 217 VKKEKVF-DALGILNQMKSDGIKPDIVCYTMVLNGVIVQED----------YVKAEELFDELLVLGLVPDVYTYNVYING 285 (453)
Q Consensus 217 ~~~g~~~-~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 285 (453)
.+.|.++ +|+++++.+...++. +..+|+.=-..+...+. +++++.+++.+.... +-+..+|+.-...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4556665 899999999987654 55666654444443333 678889999888754 3577788877777
Q ss_pred HHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc---
Q 039177 286 LCKQN--NVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRE-LNRLRELVKEMKWKGIVLNLQTYSIMIDGLASK--- 359 (453)
Q Consensus 286 ~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~--- 359 (453)
+.+.+ .+++++.+++.+.+...+ |...|+.-.-.+...|. ++++++.+..+++..+. |...|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhc
Confidence 77777 489999999999986543 77788877777778888 69999999999998877 888888777766655
Q ss_pred -----------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhC-----------CCHHHHHHHHHHHhhCCCCCCH
Q 039177 360 -----------GDIIEACGLLEEALNKGLCTQSSMFDETICGLCQR-----------GLVRKALELLKQMADKDVSPGA 416 (453)
Q Consensus 360 -----------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~~~p~~ 416 (453)
+.++++++.+....... +-|...|+-+-..+.+. +.++++++.++++.+ +.||.
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd~ 271 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--LEPEN 271 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred cccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--hCccc
Confidence 45889999999998865 44666676555555554 458899999999984 46664
No 173
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.12 E-value=1.9e-05 Score=62.33 Aligned_cols=96 Identities=13% Similarity=-0.029 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CChh
Q 039177 313 TYNTLLQALCKVRELNRLRELVKEMKWKG----IVL-NLQTYSIMIDGLASKGDIIEACGLLEEALNK----GLC-TQSS 382 (453)
Q Consensus 313 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~ 382 (453)
++..+...|...|++++|...++...+.. ..+ ....+..+...|...|++++|...+++..+. +.. ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 44445555555555555555555544321 000 1234555555666666666666666655432 111 1123
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHh
Q 039177 383 MFDETICGLCQRGLVRKALELLKQMA 408 (453)
Q Consensus 383 ~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (453)
.+..+...|...|++++|.+.+++..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 45555666667777777777766654
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.10 E-value=4.4e-05 Score=57.41 Aligned_cols=94 Identities=6% Similarity=-0.095 Sum_probs=58.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 039177 279 YNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLAS 358 (453)
Q Consensus 279 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 358 (453)
+..+...+.+.|++++|...|+...+... .+...|..+..++...|++++|+..|+...+..+. +...+..+..+|..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 33444556666666666666666665431 14556666666666666777777666666665444 55566666666666
Q ss_pred cCCHHHHHHHHHHHHH
Q 039177 359 KGDIIEACGLLEEALN 374 (453)
Q Consensus 359 ~g~~~~A~~~~~~m~~ 374 (453)
.|++++|...+++..+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6777777776666654
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.08 E-value=3.9e-05 Score=60.52 Aligned_cols=97 Identities=10% Similarity=-0.008 Sum_probs=55.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-cCHH
Q 039177 278 TYNVYINGLCKQNNVEAGIKMIACMEELGSK-PD----VITYNTLLQALCKVRELNRLRELVKEMKWK----GIV-LNLQ 347 (453)
Q Consensus 278 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-p~~~ 347 (453)
++..+...|...|++++|.+.++...+.... .+ ..++..+...+...|++++|...++...+. +.. ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444555555555555555555554431100 11 234556666666777777777776665543 111 1134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 348 TYSIMIDGLASKGDIIEACGLLEEALN 374 (453)
Q Consensus 348 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 374 (453)
++..+...|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 566677777778888888888777654
No 176
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.08 E-value=1.1e-05 Score=64.38 Aligned_cols=61 Identities=21% Similarity=0.102 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHh
Q 039177 347 QTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMA 408 (453)
Q Consensus 347 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (453)
..|..+..+|.+.|++++|+..+++..+.+ +.+...|..+..+|...|++++|...|++..
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 124 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 345555555555555555555555555543 2234445555555555555555555555555
No 177
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.06 E-value=0.00036 Score=65.27 Aligned_cols=192 Identities=9% Similarity=-0.081 Sum_probs=136.8
Q ss_pred CCcHHHHHHHHHHHHHCCCccCh----------------HhHHHHHHHHHhcCCCChHHHHHHHHHHHHcC-CCcCh---
Q 039177 147 INRVGFAIEILNCMINDGFCVDG----------------KTCSLILSSVCEQRDLSSDELLGFVQEMKKLG-FCFGM--- 206 (453)
Q Consensus 147 ~~~~~~a~~~~~~m~~~~~~p~~----------------~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~--- 206 (453)
.|++++|++.|....+..-.... ..+..+...|...|++ +++.+.+..+...- ...+.
T Consensus 17 ~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 4b4t_Q 17 EKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAK--DKLREFIPHSTEYMMQFAKSKTV 94 (434)
T ss_dssp HTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHTHHHHHTSCHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHccchHHH
Confidence 58899999999999885433221 1367788999999999 99999988876541 11111
Q ss_pred -hhHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----C
Q 039177 207 -VDYTNVIRSLVKKEKVFDALGILNQMKS----DGIKP-DIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVP-----D 275 (453)
Q Consensus 207 -~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~-----~ 275 (453)
.+.+.+-..+...|+++.|.++++.... .+..+ -..++..+...|...|++++|..++.+....-... .
T Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~ 174 (434)
T 4b4t_Q 95 KVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSL 174 (434)
T ss_dssp HHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhH
Confidence 2233444445567899999999988764 22222 24577788999999999999999999876531111 2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C-CC-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 276 VYTYNVYINGLCKQNNVEAGIKMIACMEELG--S-KP-D--VITYNTLLQALCKVRELNRLRELVKEMKWK 340 (453)
Q Consensus 276 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~-~p-~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 340 (453)
..++..++..|...|++++|..+++...... + .| . ...+..+...+...+++++|...|.+..+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 175 VDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4467888899999999999999998876421 1 12 1 245667777788899999999999887764
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.02 E-value=2.3e-05 Score=74.46 Aligned_cols=117 Identities=12% Similarity=-0.004 Sum_probs=59.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 039177 286 LCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEA 365 (453)
Q Consensus 286 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 365 (453)
+.+.|++++|.+.|++..+... .+...|..+..+|.+.|++++|+..++...+.... +...|..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 3445555566555555555321 13455555556666666666666666666555433 455555666666666666666
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHH--HHhCCCHHHHHHHHH
Q 039177 366 CGLLEEALNKGLCTQSSMFDETICG--LCQRGLVRKALELLK 405 (453)
Q Consensus 366 ~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 405 (453)
.+.|++..+.. ..+...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666655542 1122233333333 555566666666655
No 179
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.02 E-value=0.00011 Score=69.55 Aligned_cols=96 Identities=11% Similarity=-0.018 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 039177 311 VITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICG 390 (453)
Q Consensus 311 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 390 (453)
...|..+..+|.+.|++++|+..++..++.... +...|..+..+|...|++++|+..|++..+.. ..+...+..+...
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 356667777777777777777777777776544 66677777777777777777777777776653 2234556666667
Q ss_pred HHhCCCHHHHHH-HHHHHh
Q 039177 391 LCQRGLVRKALE-LLKQMA 408 (453)
Q Consensus 391 ~~~~g~~~~A~~-~~~~m~ 408 (453)
+.+.|+.+++.. .+..|.
T Consensus 395 ~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 395 QKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 777777666553 344443
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.00 E-value=1.1e-05 Score=60.39 Aligned_cols=86 Identities=9% Similarity=-0.060 Sum_probs=42.1
Q ss_pred cCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 039177 289 QNNVEAGIKMIACMEELGS-KP-DVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEAC 366 (453)
Q Consensus 289 ~~~~~~a~~~~~~m~~~~~-~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 366 (453)
.|++++|+..|++..+.+. .| +...+..+..+|.+.|++++|...|+...+..+. +...+..+..+|...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 3455555555555555321 01 2234555555555555555555555555554433 4445555555555555555555
Q ss_pred HHHHHHHHC
Q 039177 367 GLLEEALNK 375 (453)
Q Consensus 367 ~~~~~m~~~ 375 (453)
..|++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555443
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.96 E-value=0.00053 Score=51.66 Aligned_cols=22 Identities=5% Similarity=-0.013 Sum_probs=8.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 039177 317 LLQALCKVRELNRLRELVKEMK 338 (453)
Q Consensus 317 li~~~~~~~~~~~a~~~~~~~~ 338 (453)
+..+|.+.|++++|...|+.+.
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333333333333333333
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.95 E-value=0.0005 Score=51.82 Aligned_cols=92 Identities=11% Similarity=0.024 Sum_probs=56.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHHHH
Q 039177 282 YINGLCKQNNVEAGIKMIACMEELGSKPDV---ITYNTLLQALCKVRELNRLRELVKEMKWKGIVLN---LQTYSIMIDG 355 (453)
Q Consensus 282 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~li~~ 355 (453)
+...+...|++++|...|+.+.+.... +. ..+..+..+|.+.|++++|...|+.+.+.... + ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 444556666777777776666653311 11 35555666666777777777777766665332 2 4556666666
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 039177 356 LASKGDIIEACGLLEEALNK 375 (453)
Q Consensus 356 ~~~~g~~~~A~~~~~~m~~~ 375 (453)
|...|++++|...|+++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777776654
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.94 E-value=2.1e-05 Score=58.72 Aligned_cols=83 Identities=12% Similarity=0.033 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHHCCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHH
Q 039177 325 RELNRLRELVKEMKWKGI--VLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALE 402 (453)
Q Consensus 325 ~~~~~a~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 402 (453)
|++++|+..|+..++.+. .-+...+..+..+|...|++++|...|++..+.. +-+...+..+..++.+.|++++|+.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 444455555555444321 1123344444455555555555555555554432 1223344444445555555555555
Q ss_pred HHHHHh
Q 039177 403 LLKQMA 408 (453)
Q Consensus 403 ~~~~m~ 408 (453)
.+++..
T Consensus 83 ~~~~al 88 (117)
T 3k9i_A 83 LLLKII 88 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.93 E-value=0.00023 Score=67.22 Aligned_cols=108 Identities=7% Similarity=-0.094 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 039177 313 TYNTLLQALCKVRELNRLRELVKEMKWKGIVL--------------NLQTYSIMIDGLASKGDIIEACGLLEEALNKGLC 378 (453)
Q Consensus 313 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p--------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 378 (453)
.+..+...|.+.|++++|...|...++..... ....|..+..+|.+.|++++|+..+++..+.. .
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 348 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-S 348 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C
Confidence 44555555556666666666666555542221 15788999999999999999999999999875 3
Q ss_pred CChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 039177 379 TQSSMFDETICGLCQRGLVRKALELLKQMADKDVSPGARVWEALL 423 (453)
Q Consensus 379 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 423 (453)
.+...|..+..+|...|++++|+..|++..+ +.|+.......+
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l 391 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQI 391 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 4677888899999999999999999999984 566554433333
No 185
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.91 E-value=2.9e-05 Score=70.27 Aligned_cols=148 Identities=11% Similarity=-0.005 Sum_probs=77.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039177 240 DIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQ 319 (453)
Q Consensus 240 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 319 (453)
....+..+...+.+.|++++|...|++.+... |+... +...++.+++...+. ...|..+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 45566677777778888888888888876632 33221 222333333322211 126677777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-HHhCCCHH
Q 039177 320 ALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICG-LCQRGLVR 398 (453)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~ 398 (453)
+|.+.|++++|+..++..++.... +...|..+..+|...|++++|...|++..+.. .-+...+..+... ....+..+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888776544 67778888888888888888888888776542 1122333333333 23345566
Q ss_pred HHHHHHHHHh
Q 039177 399 KALELLKQMA 408 (453)
Q Consensus 399 ~A~~~~~~m~ 408 (453)
++..+|..|.
T Consensus 317 ~a~~~~~~~l 326 (338)
T 2if4_A 317 KQKEMYKGIF 326 (338)
T ss_dssp ----------
T ss_pred HHHHHHHHhh
Confidence 7777777776
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.90 E-value=4.1e-05 Score=72.78 Aligned_cols=115 Identities=9% Similarity=-0.010 Sum_probs=48.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 039177 253 VQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRE 332 (453)
Q Consensus 253 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 332 (453)
+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|.+.+++..+... .+...+..+..+|.+.|++++|..
T Consensus 18 ~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~eA~~ 95 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFRAALR 95 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444444444444444432 12234444444444555555555555544444321 133444445555555555555555
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 039177 333 LVKEMKWKGIVLNLQTYSIMIDG--LASKGDIIEACGLLE 370 (453)
Q Consensus 333 ~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 370 (453)
.|++..+.... +...+..+..+ +.+.|++++|++.++
T Consensus 96 ~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 96 DYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55554443222 22223333222 444455555555554
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.89 E-value=0.00015 Score=66.28 Aligned_cols=89 Identities=9% Similarity=-0.082 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 039177 311 VITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICG 390 (453)
Q Consensus 311 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 390 (453)
..+|..+..+|.+.|++++|+..++..++.... +...|..+..+|...|++++|...|++..+.. ..+...+..+...
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 345666666667777777777777776665433 55666666677777777777777777666543 2234445555555
Q ss_pred HHhCCCHHHHH
Q 039177 391 LCQRGLVRKAL 401 (453)
Q Consensus 391 ~~~~g~~~~A~ 401 (453)
+...++.+++.
T Consensus 351 ~~~~~~~~~a~ 361 (370)
T 1ihg_A 351 KQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 188
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.87 E-value=0.0011 Score=64.20 Aligned_cols=181 Identities=10% Similarity=-0.022 Sum_probs=143.5
Q ss_pred HHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCCHHHHHHH
Q 039177 178 SVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEK----------VFDALGILNQMKSDGIKPDIVCYTMV 247 (453)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~~~~l 247 (453)
+..+.++.+ ++|++.++.+.... +-+..+|+.--..+...|+ ++++++.++.+.+..++ +..+|+.-
T Consensus 37 ~~~~~~~~~-eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR 113 (567)
T 1dce_A 37 QKRQAGELD-ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHR 113 (567)
T ss_dssp HHHHTTCCS-HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHcCCCC-HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 344556665 78999999998876 3455668877777777777 89999999999988766 88889888
Q ss_pred HHHHHhcC--CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 039177 248 LNGVIVQE--DYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQN-NVEAGIKMIACMEELGSKPDVITYNTLLQALCKV 324 (453)
Q Consensus 248 l~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 324 (453)
.-++.+.+ +++++++.++.+.+.. .-+..+|+.-..+..+.| ..+++.+.++.+.+..+. |...|+.....+.+.
T Consensus 114 ~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l 191 (567)
T 1dce_A 114 CWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQL 191 (567)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhh
Confidence 88888889 7799999999999876 357888888888888888 899999999999886543 667777776666653
Q ss_pred --------------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH
Q 039177 325 --------------RELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIE 364 (453)
Q Consensus 325 --------------~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 364 (453)
+.++++.+.+.......+. |...|.-+-..+.+.++.++
T Consensus 192 ~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 192 HPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 5578999999999887666 78888888888877776433
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.86 E-value=0.00022 Score=56.63 Aligned_cols=97 Identities=10% Similarity=0.014 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhC--------CC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 207 VDYTNVIRSLVKKEKVFDALGILNQMKSD--------GI---------KPDIVCYTMVLNGVIVQEDYVKAEELFDELLV 269 (453)
Q Consensus 207 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------~~---------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 269 (453)
..+......+.+.|++++|+..|.+..+. .. +.+...|..+..+|.+.|++++|+..++..++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 44566667777888888888887777653 00 00223444555555555555555555555544
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 270 LGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEE 304 (453)
Q Consensus 270 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 304 (453)
.. +.+...|..+..+|...|++++|...|+...+
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 32 22344455555555555555555555555554
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.85 E-value=0.00024 Score=65.04 Aligned_cols=91 Identities=5% Similarity=-0.104 Sum_probs=64.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 039177 275 DVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMID 354 (453)
Q Consensus 275 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 354 (453)
+...|..+..+|.+.|++++|...+++..+... .+...|..+..+|...|++++|...|+...+.... +...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 345667777778888888888888888777432 24567777788888888888888888887776444 5666667777
Q ss_pred HHHhcCCHHHHHH
Q 039177 355 GLASKGDIIEACG 367 (453)
Q Consensus 355 ~~~~~g~~~~A~~ 367 (453)
.+...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7666666665543
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.84 E-value=7.9e-05 Score=70.54 Aligned_cols=133 Identities=4% Similarity=-0.022 Sum_probs=94.3
Q ss_pred HHHhcCCcchHHHHHHHHHHcC--CC----CCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHH
Q 039177 89 TLAENSQFCDISSVLDHIEKRE--NF----ETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMIN 162 (453)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~--~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~ 162 (453)
.+...|++++|+.++++..+.. -+ +....+++.|...|...|++++|..++++ +++++.....
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~-----------aL~i~~~~lG 386 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARR-----------MVDGYMKLYH 386 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHHSC
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHHcC
Confidence 4567899999999998887541 11 12356899999999999999999999877 6666666554
Q ss_pred CCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHc-----C--CCcChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039177 163 DGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKL-----G--FCFGMVDYTNVIRSLVKKEKVFDALGILNQMKS 234 (453)
Q Consensus 163 ~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~-----g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 234 (453)
...+-...+++.|...|...|+. ++|..++++..+. | .+....+.+.+-.++...+.+++|+.+|..+++
T Consensus 387 ~~Hp~~a~~l~nLa~~~~~~G~~--~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 387 HNNAQLGMAVMRAGLTNWHAGHI--EVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333455788888888888888 8888877766542 3 112233455666666677777777777777764
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.76 E-value=0.00054 Score=53.42 Aligned_cols=61 Identities=13% Similarity=0.036 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCcCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 313 TYNTLLQALCKVRELNRLRELVKEMKWK-------GIVLNLQTY----SIMIDGLASKGDIIEACGLLEEALN 374 (453)
Q Consensus 313 ~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~p~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 374 (453)
.|+.+..++.+.|++++|+..++..++. ... +...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5555555555555555555555555543 222 23344 4555555555555555555555543
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.75 E-value=0.0018 Score=62.75 Aligned_cols=175 Identities=9% Similarity=-0.023 Sum_probs=133.6
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 039177 220 EKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQED----------YVKAEELFDELLVLGLVPDVYTYNVYINGLCKQ 289 (453)
Q Consensus 220 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 289 (453)
...++|++.++++.+..+. +..+|+.--.++...|+ ++++++.++.+.+.. +-+..+|+.-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3346789999999987655 66777776666766676 899999999998865 34677888877788888
Q ss_pred C--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc-------
Q 039177 290 N--NVEAGIKMIACMEELGSKPDVITYNTLLQALCKVR-ELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASK------- 359 (453)
Q Consensus 290 ~--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~------- 359 (453)
+ +++++.+.++.+.+...+ +...|+.-..++.+.| .++++++.+..+++..+. |...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccc
Confidence 8 779999999999986543 7778888777778888 889999999999888777 888888877776663
Q ss_pred -------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHH
Q 039177 360 -------GDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRK 399 (453)
Q Consensus 360 -------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 399 (453)
+.++++++.+++....+ +-+...|..+-..+.+.|+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 55788888888887764 3456667766666666666443
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.72 E-value=0.00067 Score=52.91 Aligned_cols=111 Identities=14% Similarity=0.077 Sum_probs=79.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC
Q 039177 314 YNTLLQALCKVRELNRLRELVKEMKWKGIVL------N-----LQTYSIMIDGLASKGDIIEACGLLEEALNK-----GL 377 (453)
Q Consensus 314 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p------~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~ 377 (453)
+......+.+.|++++|+..|+..++..... + ...|..+..++.+.|++++|+..+++..+. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 4444555666677777777777666653221 2 338999999999999999999999999875 11
Q ss_pred CCC-hhhH----HHHHHHHHhCCCHHHHHHHHHHHhh-----CCCCCCHHHHHHHHh
Q 039177 378 CTQ-SSMF----DETICGLCQRGLVRKALELLKQMAD-----KDVSPGARVWEALLL 424 (453)
Q Consensus 378 ~~~-~~~~----~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~~ll~ 424 (453)
.|+ ...| .....++...|++++|+..|++..+ .|+.+........+.
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~ 150 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI 150 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 444 4456 7888899999999999999999864 466665555544443
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.69 E-value=0.0022 Score=49.17 Aligned_cols=110 Identities=14% Similarity=-0.047 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 039177 256 DYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCK----VRELNRLR 331 (453)
Q Consensus 256 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~ 331 (453)
++++|...|++..+.| .++.. +-..|...+..++|.+.|+...+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4555666666555554 12221 4444444455555555555555542 44455555555554 45555555
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 039177 332 ELVKEMKWKGIVLNLQTYSIMIDGLAS----KGDIIEACGLLEEALNKG 376 (453)
Q Consensus 332 ~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 376 (453)
..|+...+.| +...+..|...|.. .++.++|...|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555555543 34445555555555 455555555555555544
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.67 E-value=0.00017 Score=65.18 Aligned_cols=152 Identities=11% Similarity=-0.002 Sum_probs=85.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 039177 276 VYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDG 355 (453)
Q Consensus 276 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 355 (453)
...+..+...+.+.|++++|...|+...+. .|+... +...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 455667777778888888888888887763 244332 223333444332221 1378889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHhch----hcchh
Q 039177 356 LASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADKDVSPGARVWEALLLSS----VSKLD 431 (453)
Q Consensus 356 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~----~~~~~ 431 (453)
|.+.|++++|+..+++..+.. ..+...|..+..+|...|++++|...|++.. .+.|+.......+..+ ....+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al--~l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQ--KYAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT--C------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998865 3466788899999999999999999999987 4566654444333333 23334
Q ss_pred hHHHHHHHHHHhhhcCCC
Q 039177 432 FVNTSFIRLVDQILNTPC 449 (453)
Q Consensus 432 ~~~~~~~~~~~~~~~~p~ 449 (453)
.+...+.++++....+|.
T Consensus 317 ~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 317 KQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ------------------
T ss_pred HHHHHHHHhhCCCCCCCC
Confidence 444556666666555543
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.67 E-value=0.00016 Score=68.50 Aligned_cols=98 Identities=8% Similarity=0.009 Sum_probs=57.8
Q ss_pred HhHHHHHHHHHhcCCCChHHHHHHHHHHHHc-----C--CCcChhhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCC
Q 039177 170 KTCSLILSSVCEQRDLSSDELLGFVQEMKKL-----G--FCFGMVDYTNVIRSLVKKEKVFDALGILNQMKS-----DGI 237 (453)
Q Consensus 170 ~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~-----g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~ 237 (453)
.+++.|..+|...|++ ++|..++++..+. | .+....+++.|...|...|++++|+.++++..+ .|.
T Consensus 352 ~~~~nLa~~y~~~g~~--~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~ 429 (490)
T 3n71_A 352 RLLSIASEVLSYLQAY--EEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGP 429 (490)
T ss_dssp HHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4677777777777877 7777777665432 2 112234577777777777777777777766653 122
Q ss_pred C-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 238 K-P-DIVCYTMVLNGVIVQEDYVKAEELFDELLV 269 (453)
Q Consensus 238 ~-~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 269 (453)
. | ...+.+.+-.++...+.+++|+.+|..+.+
T Consensus 430 ~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 430 SHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 222334444455555666666666665543
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.64 E-value=0.0027 Score=48.65 Aligned_cols=110 Identities=10% Similarity=-0.051 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCCHHHHH
Q 039177 291 NVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLAS----KGDIIEAC 366 (453)
Q Consensus 291 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~ 366 (453)
+.++|.+.|+...+.| .++.. |...|...+..++|.+.|+...+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3445555555555444 12221 3344444444555555555555443 34444445555544 45555555
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHh----CCCHHHHHHHHHHHhhCC
Q 039177 367 GLLEEALNKGLCTQSSMFDETICGLCQ----RGLVRKALELLKQMADKD 411 (453)
Q Consensus 367 ~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 411 (453)
..|++..+.| +...+..|-..|.. .++.++|..+|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555555443 23334444444444 455555555555554443
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.59 E-value=8.4e-05 Score=54.45 Aligned_cols=64 Identities=14% Similarity=0.016 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 311 VITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNK 375 (453)
Q Consensus 311 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 375 (453)
...+..+...+.+.|++++|...|+...+.... +...+..+..+|.+.|++++|+..+++..+.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344555566666666666666666666655433 5556666666666666666666666666554
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.48 E-value=0.00075 Score=49.79 Aligned_cols=78 Identities=13% Similarity=0.062 Sum_probs=37.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 295 GIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALN 374 (453)
Q Consensus 295 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 374 (453)
+...|+...+... .+...+..+...|...|++++|...|+...+.... +...|..+..+|...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444321 13444555555555555555555555555544332 344455555555555555555555554443
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.48 E-value=0.0016 Score=45.35 Aligned_cols=62 Identities=18% Similarity=0.128 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 313 TYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNK 375 (453)
Q Consensus 313 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 375 (453)
.+..+...+...|++++|...++...+.... +...+..+..+|...|++++|...|++..+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4444444555555555555555555444322 3444555555555555555555555555443
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.00021 Score=52.28 Aligned_cols=63 Identities=14% Similarity=0.073 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 277 YTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWK 340 (453)
Q Consensus 277 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 340 (453)
..+..+...+.+.|++++|...|+...+... .+...+..+..+|.+.|++++|...++...+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3444555555556666666666655555321 13455555556666666666666666665554
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.39 E-value=0.00023 Score=55.38 Aligned_cols=71 Identities=7% Similarity=-0.150 Sum_probs=38.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 039177 287 CKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVREL----------NRLRELVKEMKWKGIVLNLQTYSIMIDGL 356 (453)
Q Consensus 287 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~----------~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 356 (453)
.+.+.+++|.+.++...+... -+...|..+..++.+.+++ ++|+..|++.++..+. +...|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 344556666666666665432 1455666666666665543 3555555555555443 445555555555
Q ss_pred Hhc
Q 039177 357 ASK 359 (453)
Q Consensus 357 ~~~ 359 (453)
...
T Consensus 91 ~~l 93 (158)
T 1zu2_A 91 TSF 93 (158)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.37 E-value=0.0027 Score=44.07 Aligned_cols=77 Identities=14% Similarity=0.065 Sum_probs=36.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 039177 278 TYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGL 356 (453)
Q Consensus 278 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 356 (453)
.+..+...+...|++++|...|+...+... .+...+..+..+|.+.|++++|...++...+.... +...+..+..++
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~ 87 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 344444445555555555555555444321 13344555555555555555555555555544322 334444444433
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.36 E-value=0.0027 Score=46.71 Aligned_cols=77 Identities=18% Similarity=0.003 Sum_probs=36.9
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHh
Q 039177 330 LRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMA 408 (453)
Q Consensus 330 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (453)
|...|+...+.... +...+..+...|...|++++|...|++..+.+ ..+...|..+...|...|++++|...|++..
T Consensus 4 a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444443322 44445555555555555555555555554432 1223344444555555555555555555544
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.25 E-value=0.0013 Score=47.11 Aligned_cols=62 Identities=16% Similarity=0.031 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039177 311 VITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEAL 373 (453)
Q Consensus 311 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 373 (453)
...+..+...|.+.|++++|+..|+...+.... +...|..+..+|...|++++|.+.|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555555555556666666655555555433 34455555555555666666655555544
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.20 E-value=0.0012 Score=51.46 Aligned_cols=97 Identities=12% Similarity=0.005 Sum_probs=52.2
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 039177 219 KEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDY----------VKAEELFDELLVLGLVPDVYTYNVYINGLCK 288 (453)
Q Consensus 219 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~----------~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 288 (453)
.+.+++|++.++...+..+. +...|..+..++...+++ ++|+..|++.++.. +.+..+|..+..+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHH
Confidence 34455555666555554433 555555555555555443 36666666655543 1234455556666655
Q ss_pred c-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039177 289 Q-----------NNVEAGIKMIACMEELGSKPDVITYNTLLQ 319 (453)
Q Consensus 289 ~-----------~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 319 (453)
. |++++|.+.|++..+. .|+...|...+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 4 3666677766666663 455555444444
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.14 E-value=0.0026 Score=45.55 Aligned_cols=63 Identities=8% Similarity=0.034 Sum_probs=35.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039177 205 GMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELL 268 (453)
Q Consensus 205 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 268 (453)
+...+..+...|.+.|++++|++.|++..+..+. +...|..+..+|...|++++|.+.|++.+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555555666666666666666655554332 34455555555556666666665555544
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.77 E-value=0.03 Score=50.15 Aligned_cols=73 Identities=15% Similarity=0.064 Sum_probs=51.5
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 039177 344 LNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADKDVSPGARVWE 420 (453)
Q Consensus 344 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 420 (453)
.+..+|.++...+...|++++|...++++...+ |+...|..+-..+.-.|++++|.+.|++.. .+.|...||.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al--rL~P~~~t~~ 347 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF--NLRPGANTLY 347 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHSCSHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCCCcChHH
Confidence 366677777666666688888888888877765 555556666667777788888888887766 3466666654
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.62 E-value=0.0069 Score=42.91 Aligned_cols=55 Identities=16% Similarity=0.183 Sum_probs=26.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 320 ALCKVRELNRLRELVKEMKWKGIVLNLQ-TYSIMIDGLASKGDIIEACGLLEEALNK 375 (453)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 375 (453)
.+.+.|++++|...|+...+.... +.. .+..+..+|...|++++|.+.|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344445555555555555444322 333 4444555555555555555555555443
No 211
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.59 E-value=0.045 Score=55.57 Aligned_cols=154 Identities=14% Similarity=0.061 Sum_probs=77.8
Q ss_pred HHHhcCChhHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 039177 215 SLVKKEKVFDALG-ILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVE 293 (453)
Q Consensus 215 ~~~~~g~~~~a~~-~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~ 293 (453)
.....+++++|.+ ++..+. +......++..+.+.|..+.|.++.++-. .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHH
Confidence 3345666666665 432111 02222556666666777777665542111 1123345667777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039177 294 AGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEAL 373 (453)
Q Consensus 294 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 373 (453)
+|.++.+.+ .+...|..+...+.+.++++.|.+.|..+.. |..+...|...|+.+...++-+...
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 776664332 3556777777777777777777777765532 2233333344455554444444443
Q ss_pred HCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 039177 374 NKGLCTQSSMFDETICGLCQRGLVRKALELLKQM 407 (453)
Q Consensus 374 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (453)
..|. ++.-..+|.+.|++++|++++.++
T Consensus 735 ~~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 735 TTGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HcCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3331 222233344444555554444443
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.57 E-value=0.0062 Score=56.59 Aligned_cols=95 Identities=4% Similarity=-0.102 Sum_probs=67.1
Q ss_pred hcCCcchHHHHHHHHHHcC--CCCC----CHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCC
Q 039177 92 ENSQFCDISSVLDHIEKRE--NFET----PEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGF 165 (453)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~ 165 (453)
..|++++|..++++..+.. -+.+ -..+++.|..+|...|++++|..++++ ++++++.......
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~-----------aL~i~~~~lG~~H 378 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQK-----------IIKPYSKHYPVYS 378 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHHSCSSC
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHHcCCCC
Confidence 3678899999999887631 1222 246899999999999999999999877 5556555544333
Q ss_pred ccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 039177 166 CVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKK 199 (453)
Q Consensus 166 ~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~ 199 (453)
+-...+++.|...|...|+. ++|..++++..+
T Consensus 379 p~~a~~l~nLa~~~~~qg~~--~eA~~~~~~Al~ 410 (433)
T 3qww_A 379 LNVASMWLKLGRLYMGLENK--AAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCH--HHHHHHHHHHHH
Confidence 22344677777777777777 777777766544
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.48 E-value=0.1 Score=46.66 Aligned_cols=67 Identities=7% Similarity=-0.094 Sum_probs=47.5
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039177 273 VPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKG 341 (453)
Q Consensus 273 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 341 (453)
..+..++.++...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.+.+....+
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3456666666666666678888888887777754 666666666777777788888888777777663
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.47 E-value=0.0098 Score=55.30 Aligned_cols=101 Identities=7% Similarity=0.013 Sum_probs=71.7
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHcC--CCCC----CHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHH
Q 039177 86 VIKTLAENSQFCDISSVLDHIEKRE--NFET----PEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNC 159 (453)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~ 159 (453)
.+..+.+.|++++|..++++..+.. -+.+ -..+++.|...|...|++++|..++++ ++++++.
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~-----------~L~i~~~ 361 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTR-----------TMEPYRI 361 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-----------HHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHH-----------HHHhHHH
Confidence 3556677899999999999988641 1222 246899999999999999999999876 5555555
Q ss_pred HHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 039177 160 MINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKK 199 (453)
Q Consensus 160 m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~ 199 (453)
......+-...+++.|...|...|+. ++|..++++..+
T Consensus 362 ~lg~~Hp~~a~~l~nLa~~~~~~g~~--~eA~~~~~~Al~ 399 (429)
T 3qwp_A 362 FFPGSHPVRGVQVMKVGKLQLHQGMF--PQAMKNLRLAFD 399 (429)
T ss_dssp HSCSSCHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHH
Confidence 54433333345677777777777777 777777666543
No 215
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.43 E-value=0.069 Score=54.22 Aligned_cols=129 Identities=17% Similarity=0.187 Sum_probs=82.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 039177 210 TNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQ 289 (453)
Q Consensus 210 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 289 (453)
..++..+.+.|.++.|+++.+.-. .-.......|+++.|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 677777888888888887653211 1133455678888888875433 4678888888888889
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 039177 290 NNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLL 369 (453)
Q Consensus 290 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 369 (453)
++++.|.+.|..+.. |..+...|...|+.+...++-+.....|. ++....+|.+.|++++|.+++
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH
Confidence 999988888888754 44555555666666666555555444431 122333444555555555555
Q ss_pred HH
Q 039177 370 EE 371 (453)
Q Consensus 370 ~~ 371 (453)
.+
T Consensus 760 ~~ 761 (814)
T 3mkq_A 760 IK 761 (814)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.42 E-value=0.0051 Score=57.19 Aligned_cols=85 Identities=12% Similarity=-0.053 Sum_probs=48.5
Q ss_pred CCcHHHHHHHHHHHHH---CCCccC----hHhHHHHHHHHHhcCCCChHHHHHHHHHHHHc-----C--CCcChhhHHHH
Q 039177 147 INRVGFAIEILNCMIN---DGFCVD----GKTCSLILSSVCEQRDLSSDELLGFVQEMKKL-----G--FCFGMVDYTNV 212 (453)
Q Consensus 147 ~~~~~~a~~~~~~m~~---~~~~p~----~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~-----g--~~~~~~~~~~l 212 (453)
.|++++|+.++++.+. .-+.|+ ..+++.+..+|...|++ ++|..++++..+. | .+-...+++.|
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~--~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDW--EGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCH--HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4566777776666554 111122 24566667777777776 6666666665432 2 11123346666
Q ss_pred HHHHHhcCChhHHHHHHHHHH
Q 039177 213 IRSLVKKEKVFDALGILNQMK 233 (453)
Q Consensus 213 i~~~~~~g~~~~a~~~~~~m~ 233 (453)
...|...|++++|+.++++..
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHH
Confidence 666666666666666666654
No 217
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.41 E-value=0.18 Score=37.38 Aligned_cols=64 Identities=20% Similarity=0.115 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCC
Q 039177 349 YSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADKDVS 413 (453)
Q Consensus 349 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 413 (453)
.+..++.....|+-|.-.++..++.. +..|+....-.+..+|.+.|+..+|.+++.+..++|++
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 34444555555555555555555422 22445555555555666666666666666665555543
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.39 E-value=0.034 Score=51.66 Aligned_cols=91 Identities=11% Similarity=-0.119 Sum_probs=55.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-Cc-CHHH
Q 039177 283 INGLCKQNNVEAGIKMIACMEELG---SKPD----VITYNTLLQALCKVRELNRLRELVKEMKWK-----GI-VL-NLQT 348 (453)
Q Consensus 283 i~~~~~~~~~~~a~~~~~~m~~~~---~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~p-~~~~ 348 (453)
+..+.+.|++++|..++++..+.. +.|+ ..+++.+..+|...|++++|+.++++++.. |. .| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556677777777777766421 1122 246677777777777777777777765532 21 12 2345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 039177 349 YSIMIDGLASKGDIIEACGLLEEAL 373 (453)
Q Consensus 349 ~~~li~~~~~~g~~~~A~~~~~~m~ 373 (453)
++.|...|...|++++|..++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6667777777777777777776654
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.27 E-value=0.015 Score=41.13 Aligned_cols=57 Identities=19% Similarity=0.232 Sum_probs=32.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 213 IRSLVKKEKVFDALGILNQMKSDGIKPDIV-CYTMVLNGVIVQEDYVKAEELFDELLVL 270 (453)
Q Consensus 213 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 270 (453)
...+.+.|++++|++.|++..+.... +.. .|..+..+|...|++++|...|++..+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34455566666666666666554322 344 5555566666666666666666666553
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.22 E-value=0.021 Score=43.89 Aligned_cols=63 Identities=25% Similarity=0.145 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhCCCHHHHHHHHHHHh
Q 039177 345 NLQTYSIMIDGLASKG---DIIEACGLLEEALNKGLCT--QSSMFDETICGLCQRGLVRKALELLKQMA 408 (453)
Q Consensus 345 ~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (453)
+..+.-.+..++++.+ ++++++.+|++..+.+ .| ....+-.|..+|.+.|++++|.++++.+.
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL 98 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 98 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4444444444444444 3334444444444432 12 12223333344445555555555555544
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.13 E-value=0.29 Score=42.04 Aligned_cols=95 Identities=15% Similarity=0.079 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-CCHHHH
Q 039177 223 FDALGILNQMKSDGIK-PDIVCYTMVLNGVIVQ-----EDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQ-NNVEAG 295 (453)
Q Consensus 223 ~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-~~~~~a 295 (453)
..|...+++..+.... .+...|..+...|.+. |+.++|.+.|++.++.+..-+..++......++.. |+.+++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 4555555555554211 0244666666666663 67777777777776643211355555566666663 667777
Q ss_pred HHHHHHHHHCCCC--CCHHHHHHH
Q 039177 296 IKMIACMEELGSK--PDVITYNTL 317 (453)
Q Consensus 296 ~~~~~~m~~~~~~--p~~~~~~~l 317 (453)
.+.+++....... |+....+.+
T Consensus 260 ~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 260 DEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHcCCCCCCCChhHHHHH
Confidence 7777777665544 554444443
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.10 E-value=0.2 Score=39.48 Aligned_cols=99 Identities=12% Similarity=0.113 Sum_probs=54.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 039177 251 VIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRL 330 (453)
Q Consensus 251 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 330 (453)
....|+++.|.++.+.+ .+...|..+.......|+++-|.+.|..... +..+.-.|.-.|+.+..
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34556666666665544 3455666666666666666666666666543 34444455555665555
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039177 331 RELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLE 370 (453)
Q Consensus 331 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 370 (453)
.++-+.....|- ++.-...+...|+++++.++|.
T Consensus 80 ~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 80 SKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHH
Confidence 555444444431 2333444455566666666664
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.02 E-value=0.13 Score=35.90 Aligned_cols=65 Identities=11% Similarity=0.004 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 310 DVITYNTLLQALCKVRE---LNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNK 375 (453)
Q Consensus 310 ~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 375 (453)
|...+..+..++...++ .++|..++++.++.... +......+...+.+.|++++|+..|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44455555555543333 46666666666665444 5555556666666666666666666666554
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.81 E-value=0.14 Score=35.67 Aligned_cols=46 Identities=13% Similarity=0.055 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 223 FDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLV 269 (453)
Q Consensus 223 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 269 (453)
++|..++++..+..+. +......+...+.+.|++++|+..|+.+++
T Consensus 26 ~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 26 DEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444444444443322 334444444444444444444444444444
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.47 E-value=0.078 Score=37.96 Aligned_cols=61 Identities=21% Similarity=0.142 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCChhhHHHHHHHHHhCCCHHHHHHHHHHHh
Q 039177 348 TYSIMIDGLASKGDIIEACGLLEEALNKG------LCTQSSMFDETICGLCQRGLVRKALELLKQMA 408 (453)
Q Consensus 348 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (453)
-+-.|...+.+.|+++.|...|+...+.- -.+...++..+..+|.+.|++++|..++++..
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 33444444445555555555554443320 11233345555555555555555555555554
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.04 E-value=0.35 Score=37.10 Aligned_cols=81 Identities=15% Similarity=0.020 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHhcCCHHHHHH
Q 039177 293 EAGIKMIACMEELGSKPDVITYNTLLQALCKVR---ELNRLRELVKEMKWKGIVL--NLQTYSIMIDGLASKGDIIEACG 367 (453)
Q Consensus 293 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~ 367 (453)
..+.+-|.+..+.|. ++..+.-.+.-++++.+ +.++++.+++++.+.+ .| +...+-.|.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 334444444444333 45555555555555555 4446666666665553 12 23344445555566666666666
Q ss_pred HHHHHHHC
Q 039177 368 LLEEALNK 375 (453)
Q Consensus 368 ~~~~m~~~ 375 (453)
.++.+.+.
T Consensus 93 y~~~lL~i 100 (152)
T 1pc2_A 93 YVRGLLQT 100 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 66666554
No 227
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.95 E-value=0.35 Score=36.75 Aligned_cols=54 Identities=9% Similarity=0.044 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 039177 290 NNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVL 344 (453)
Q Consensus 290 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 344 (453)
++.++|.++|+.+.+..-+. ...|....+.-.+.|+++.|.+++...+..+.+|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 56666666666665542222 4455555555566666677777666666666553
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.94 E-value=0.27 Score=42.19 Aligned_cols=85 Identities=14% Similarity=0.096 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc-CCH
Q 039177 292 VEAGIKMIACMEELGSKPD---VITYNTLLQALCKV-----RELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASK-GDI 362 (453)
Q Consensus 292 ~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~ 362 (453)
...|...+++..+. .|+ -..|..+...|.+. |+.++|.+.|++.++.+..-+..++....+.++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34555555555552 344 33566666666663 66666666666666654432355555566666653 666
Q ss_pred HHHHHHHHHHHHCCCC
Q 039177 363 IEACGLLEEALNKGLC 378 (453)
Q Consensus 363 ~~A~~~~~~m~~~~~~ 378 (453)
++|.+.+++.......
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 6666666666665444
No 229
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.86 E-value=0.85 Score=33.94 Aligned_cols=140 Identities=12% Similarity=-0.019 Sum_probs=78.6
Q ss_pred HHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCccCh
Q 039177 90 LAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCVDG 169 (453)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 169 (453)
+.-.|..+++.++.....+++ +..-+|=+|--....-+-+-..++++.+-+ -.|.
T Consensus 17 ~ildG~v~qGveii~k~~~ss----ni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---------------------iFDi 71 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKIGS---------------------YFDL 71 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---------------------GSCG
T ss_pred HHHhhhHHHHHHHHHHHcCCC----CccccceeeeecchhhchhHHHHHHHHHhh---------------------hcCc
Confidence 344688899999999888763 344455455555555555555555555332 1221
Q ss_pred HhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 039177 170 KTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLN 249 (453)
Q Consensus 170 ~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 249 (453)
...+++ ......+-. .| .+.......++.....|+-++-.+++..+.. +.+|+....-.+..
T Consensus 72 ----------s~C~Nl--KrVi~C~~~---~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~ 133 (172)
T 1wy6_A 72 ----------DKCQNL--KSVVECGVI---NN--TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIAN 133 (172)
T ss_dssp ----------GGCSCT--HHHHHHHHH---TT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHH
T ss_pred ----------HhhhcH--HHHHHHHHH---hc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHH
Confidence 233333 333332211 11 2233444555666666777777777766433 23445666666667
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC
Q 039177 250 GVIVQEDYVKAEELFDELLVLGL 272 (453)
Q Consensus 250 ~~~~~g~~~~a~~~~~~m~~~g~ 272 (453)
+|.+.|+..++.+++.+.-+.|+
T Consensus 134 Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 134 ALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhcchhhHHHHHHHHHHhhh
Confidence 77777777777777777766664
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.84 E-value=0.37 Score=34.31 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=7.2
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 039177 247 VLNGVIVQEDYVKAEELFD 265 (453)
Q Consensus 247 ll~~~~~~g~~~~a~~~~~ 265 (453)
|...+.+.|++..|...|+
T Consensus 11 lG~~~~~~~~y~~A~~W~~ 29 (104)
T 2v5f_A 11 LGKVAYTEADYYHTELWME 29 (104)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHH
Confidence 3333333333333333333
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.79 E-value=1.2 Score=35.18 Aligned_cols=100 Identities=10% Similarity=0.094 Sum_probs=53.2
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 039177 215 SLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEA 294 (453)
Q Consensus 215 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~ 294 (453)
...+.|+++.|.++.+.+. +...|..|.......|+++-|++.|..... +..+.-.|.-.|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 3345566666666655541 555666666666666666666666655422 2334444555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039177 295 GIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVK 335 (453)
Q Consensus 295 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 335 (453)
...+-+.....| . ++.....+...|+++++.++|.
T Consensus 79 L~kla~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 79 LSKMQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHH
Confidence 554444443332 1 3444445555566666666653
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.49 E-value=0.17 Score=37.34 Aligned_cols=82 Identities=21% Similarity=0.113 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--ChhhHHHHHHHHHhCCCHHHH
Q 039177 326 ELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIE---ACGLLEEALNKGLCT--QSSMFDETICGLCQRGLVRKA 400 (453)
Q Consensus 326 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A 400 (453)
.+..+.+-|......|. ++..+--.+..++.+.....+ ++.++++....+ .| .....-.|..++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34445555554444443 455565566666666665554 666666665543 12 233344455677777777777
Q ss_pred HHHHHHHhh
Q 039177 401 LELLKQMAD 409 (453)
Q Consensus 401 ~~~~~~m~~ 409 (453)
.++++.+++
T Consensus 94 ~~~~~~lL~ 102 (126)
T 1nzn_A 94 LKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777763
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.48 E-value=0.84 Score=34.70 Aligned_cols=112 Identities=14% Similarity=0.097 Sum_probs=64.3
Q ss_pred ChhhHHHHHHHHHhcCCh------hHHHHHHHHHHhCCCCCCH-HHHHHHHH------HHHhcCCHHHHHHHHHHHHHCC
Q 039177 205 GMVDYTNVIRSLVKKEKV------FDALGILNQMKSDGIKPDI-VCYTMVLN------GVIVQEDYVKAEELFDELLVLG 271 (453)
Q Consensus 205 ~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~~~~~~~~-~~~~~ll~------~~~~~g~~~~a~~~~~~m~~~g 271 (453)
|..+|-..+...-+.|+. +...++|++.... ++|+. ..|...+. .+...++.++|.++|+.+++.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 444455555555555555 5555566555542 23321 11111111 1123378888888888887653
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039177 272 LVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQ 319 (453)
Q Consensus 272 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 319 (453)
-+. ...|.....--.+.|+++.|.+++...+..+.+| ...+...|+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 333 6666666666678899999999999888877654 334444443
No 234
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.47 E-value=0.0001 Score=67.29 Aligned_cols=235 Identities=12% Similarity=0.133 Sum_probs=123.5
Q ss_pred ChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHH
Q 039177 79 PPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILN 158 (453)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~ 158 (453)
|+..|..+|.+..+.|.+++-...+.-.++. ..+..+=+.|+-+|++.++..+-.+++.
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~---~ke~~IDteLi~ayAk~~rL~elEefl~------------------ 140 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN------------------ 140 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT---CCSTTTTHHHHHHHHTSCSSSTTTSTTS------------------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccHHHHHHHHHhhCcHHHHHHHHc------------------
Confidence 5556667777777777777766666555544 2334455667777777777655322211
Q ss_pred HHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 039177 159 CMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIK 238 (453)
Q Consensus 159 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 238 (453)
.||..-...+..-|...|.. +.|.-+|.. +.-|.-|...+.+.|++..|.+.-++.
T Consensus 141 -------~~N~A~iq~VGDrcf~e~lY--eAAKilys~---------isN~akLAstLV~L~~yq~AVdaArKA------ 196 (624)
T 3lvg_A 141 -------GPNNAHIQQVGDRCYDEKMY--DAAKLLYNN---------VSNFGRLASTLVHLGEYQAAVDGARKA------ 196 (624)
T ss_dssp -------CCSSSCTHHHHHHHHHSCCS--TTSSTTGGG---------SCCCTTTSSSSSSCSGGGSSTTTTTTC------
T ss_pred -------CCCcccHHHHHHHHHHccCH--HHHHHHHHh---------CccHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 24555555555556666655 444333322 222333444445555555554432222
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 039177 239 PDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLL 318 (453)
Q Consensus 239 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li 318 (453)
-+..||.-+-.+|...+.+..|...--.++- .......++..|-..|.+++.+.+++.-... -.....+|+-|.
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELa 270 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELA 270 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHH
Confidence 2556777777777777777766554444332 1122234555677777777777777666532 123556677776
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC-CCC------cCHHHHHHHHHHHHhcCCHHHH
Q 039177 319 QALCKVRELNRLRELVKEMKWK-GIV------LNLQTYSIMIDGLASKGDIIEA 365 (453)
Q Consensus 319 ~~~~~~~~~~~a~~~~~~~~~~-~~~------p~~~~~~~li~~~~~~g~~~~A 365 (453)
-.|++- +.++..+.++..-.+ ++. -....|.-++-.|.+-.++|.|
T Consensus 271 ILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA 323 (624)
T 3lvg_A 271 ILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 323 (624)
T ss_dssp HHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHH
T ss_pred HHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHH
Confidence 666664 333333333321111 111 0233455555555555555544
No 235
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.49 E-value=0.63 Score=42.45 Aligned_cols=66 Identities=12% Similarity=0.142 Sum_probs=33.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhh-----CCCCCCHHH
Q 039177 352 MIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMAD-----KDVSPGARV 418 (453)
Q Consensus 352 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~ 418 (453)
++..+...|+.++|...+..+.... +.+...|..++.+|.+.|+..+|++.|+++.+ .|+.|+..+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 4444445555555555555554432 33444555555555555555555555554432 255555444
No 236
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.19 E-value=0.00049 Score=63.01 Aligned_cols=208 Identities=11% Similarity=0.089 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHH
Q 039177 117 FIFIDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQE 196 (453)
Q Consensus 117 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~ 196 (453)
.+|..|..++.+.|++.+|++.|-+. -|...|..++.++.+.|.. +...+.+..
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIkA------------------------~Dps~y~eVi~~A~~~~~~--edLv~yL~M 108 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIKA------------------------DDPSSYMEVVQAANTSGNW--EELVKYLQM 108 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCCC------------------------SCCCSSSHHHHHTTTSSCC--TTHHHHHHT
T ss_pred cHHHHHHHHHHccCchHHHHHHHHhC------------------------CChHHHHHHHHHHHhCCCH--HHHHHHHHH
Confidence 48889999999999999988776542 2556677888888888887 667766655
Q ss_pred HHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----
Q 039177 197 MKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLG----- 271 (453)
Q Consensus 197 ~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g----- 271 (453)
..+.. -+..+=+.|+-+|++.+++.+-.+++. .||..-...+..-|...|.++.|.-+|..+....
T Consensus 109 aRk~~--ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAst 179 (624)
T 3lvg_A 109 ARKKA--RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLAST 179 (624)
T ss_dssp TSTTC--CSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSS
T ss_pred HHHHh--cccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHH
Confidence 44443 334445678888888887665443321 3455555566666777777776666665432110
Q ss_pred ---------------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 039177 272 ---------------LVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKE 336 (453)
Q Consensus 272 ---------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 336 (453)
--.++.||..+-.+|...+.+..|.-.--.++-. +| -...++.-|-..|.+++.+.+++.
T Consensus 180 LV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEa 254 (624)
T 3lvg_A 180 LVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEA 254 (624)
T ss_dssp SSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHH
T ss_pred HHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 1247889999999999999988876665454432 22 244577888999999999999988
Q ss_pred HHHCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 039177 337 MKWKGIVLNLQTYSIMIDGLASKGDIIEAC 366 (453)
Q Consensus 337 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 366 (453)
-.... ......|+-|.-.|++- ++++..
T Consensus 255 glglE-rAHmGmFTELaILYsKY-~PeKlm 282 (624)
T 3lvg_A 255 ALGLE-RAHMGMFTELAILYSKF-KPQKMR 282 (624)
T ss_dssp HTTST-TCCHHHHHHHHHHHHSS-CTTHHH
T ss_pred HhCCC-chhHHHHHHHHHHHHhc-CHHHHH
Confidence 77432 34788999999999985 344333
No 237
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.99 E-value=7.7 Score=35.97 Aligned_cols=56 Identities=5% Similarity=0.070 Sum_probs=24.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039177 282 YINGLCKQNNVEAGIKMIACMEEL--GSKPD---VITYNTLLQALCKVRELNRLRELVKEM 337 (453)
Q Consensus 282 li~~~~~~~~~~~a~~~~~~m~~~--~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~ 337 (453)
+...|...|++.+|.+++..+... |.... ...+...++.|...+++..|..++..+
T Consensus 143 La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki 203 (445)
T 4b4t_P 143 LVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKI 203 (445)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 444444555555555555444321 11100 123344444555555555555544443
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.82 E-value=1.2 Score=44.21 Aligned_cols=51 Identities=18% Similarity=0.121 Sum_probs=26.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 039177 356 LASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQM 407 (453)
Q Consensus 356 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (453)
+...|+++.|+++-++....- +.+-.+|..|...|...|+++.|+-.++.+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 334455555555555554432 223445555555555555555555555554
No 239
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.74 E-value=0.71 Score=32.20 Aligned_cols=63 Identities=13% Similarity=0.249 Sum_probs=49.4
Q ss_pred CcchHHHHHHHhhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 039177 60 QPHILSSLLHSFSIYNCEPPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIK 124 (453)
Q Consensus 60 ~~~~~~~ll~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 124 (453)
+..-+..-+..+-..++.|++....+.+++|.+.+++..|.++++.+...-|- ...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~--~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--chhhHHHHHH
Confidence 55566777788888899999999999999999999999999999998876432 2345655554
No 240
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.59 E-value=1.5 Score=32.32 Aligned_cols=67 Identities=15% Similarity=-0.033 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 309 PDVITYNTLLQALCKVRELNR---LRELVKEMKWKG-IVLNLQTYSIMIDGLASKGDIIEACGLLEEALNK 375 (453)
Q Consensus 309 p~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 375 (453)
++..+--.+..++++..+... ++.++.++.+.+ ..-.....-.|.-++.+.|++++|.+.++.+.+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 344444444444444444333 555555554442 1012223333444555555555555555555543
No 241
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.52 E-value=16 Score=38.64 Aligned_cols=164 Identities=9% Similarity=0.021 Sum_probs=86.2
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC---CCcHHHHHHHHHH
Q 039177 83 YHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIPKFR---INRVGFAIEILNC 159 (453)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~a~~~~~~ 159 (453)
...++..+.+.+..+.+.++..+.. .+...--.+..+|..+|++++|...|.+....- ..... ...-+..
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~-~~~~~~~ 887 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFA-VLREFQE 887 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCS-SHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhh-hhccccc
Confidence 4457777888888888877665543 344444566788999999999999998754311 00000 0001111
Q ss_pred HHHCCC--ccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcC----hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 039177 160 MINDGF--CVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFG----MVDYTNVIRSLVKKEKVFDALGILNQMK 233 (453)
Q Consensus 160 m~~~~~--~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~ 233 (453)
+..... ..-..-|..++..+-+.+.. +.+.++-....+..-+-+ ...|..+.+.+...|++++|...+-.+.
T Consensus 888 ~~~~~~~~~~l~~YY~hv~~LFe~~~~~--~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p 965 (1139)
T 4fhn_B 888 IAEKYHHQNLLSCYYLHLSKKLFEESAY--IDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS 965 (1139)
T ss_dssp HHHTTTSCCSSHHHHHHHHHHHHHTSCC--HHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC
Confidence 111100 01112355566666666665 555555444433321111 1135666666666666666666666655
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCH
Q 039177 234 SDGIKPDIVCYTMVLNGVIVQEDY 257 (453)
Q Consensus 234 ~~~~~~~~~~~~~ll~~~~~~g~~ 257 (453)
....+ ......++..+|..|..
T Consensus 966 d~~~r--~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 966 TTPLK--KSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HSSSC--HHHHHHHHHHHHHHCCH
T ss_pred CHHHH--HHHHHHHHHHHHhCCCh
Confidence 44322 23344455444444443
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.13 E-value=1.2 Score=40.55 Aligned_cols=68 Identities=7% Similarity=0.068 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCChhh
Q 039177 315 NTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALN-----KGLCTQSSM 383 (453)
Q Consensus 315 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~ 383 (453)
..++..+...|+++++...+..+....+- +...|..+|.+|.+.|+..+|++.|+...+ .|+.|...+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34556666677777777666666655433 666777777777777777777777766543 366666654
No 243
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.62 E-value=9.9 Score=40.17 Aligned_cols=190 Identities=12% Similarity=0.120 Sum_probs=116.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---------------
Q 039177 210 TNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVP--------------- 274 (453)
Q Consensus 210 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~--------------- 274 (453)
..++..+...+.++.+.++...... +...--.+..+|...|++++|.+.|.+.-. |+..
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~-----~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC-----CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccc
Confidence 3455666677777777665543322 444445566788899999999999976421 1100
Q ss_pred --------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 039177 275 --------DVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDV----ITYNTLLQALCKVRELNRLRELVKEMKWKGI 342 (453)
Q Consensus 275 --------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 342 (453)
-..-|..++..+.+.+.++.+.++-...++....-+. ..|..+.+.+...|++++|...+-.+.....
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 1123566777888888888888877766653222222 2578889999999999999999888876644
Q ss_pred CcCHHHHHHHHHHHHhcCCHHH------------HHHHHHHHHHC--CCCCChhhHHHHHHHHHhCCCHHHHHHH-HHHH
Q 039177 343 VLNLQTYSIMIDGLASKGDIIE------------ACGLLEEALNK--GLCTQSSMFDETICGLCQRGLVRKALEL-LKQM 407 (453)
Q Consensus 343 ~p~~~~~~~li~~~~~~g~~~~------------A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m 407 (453)
+ ......||...+..|..+. ..+++....+. .+...+.-|..|-.-+...|++.+|-.+ |+..
T Consensus 970 r--~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~ 1047 (1139)
T 4fhn_B 970 K--KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKL 1047 (1139)
T ss_dssp C--HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHH
Confidence 3 4456667766666655443 33443322211 1122223355555566677777666554 4443
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.18 E-value=2.7 Score=41.65 Aligned_cols=52 Identities=6% Similarity=-0.045 Sum_probs=27.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039177 320 ALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEA 372 (453)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 372 (453)
.|...|+++.|+.+-+.....-+. +-.+|..|..+|...|+++.|+-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 344455555555555555544222 3445555555555555555555555544
No 245
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.16 E-value=1.8 Score=32.05 Aligned_cols=62 Identities=13% Similarity=0.266 Sum_probs=40.0
Q ss_pred CcchHHHHHHHhhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHH
Q 039177 60 QPHILSSLLHSFSIYNCEPPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLI 123 (453)
Q Consensus 60 ~~~~~~~ll~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 123 (453)
|..-+..-+..+-.+++.|++......+++|.+.+++..|.++|+.+...-| +...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHH
Confidence 4445555666666677777777777777777777777777777777766532 2233454444
No 246
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=87.84 E-value=6.7 Score=29.04 Aligned_cols=73 Identities=11% Similarity=0.057 Sum_probs=42.4
Q ss_pred CCcCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCH
Q 039177 342 IVLNLQTYSIMIDGLASKGDI---IEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADKDVSPGA 416 (453)
Q Consensus 342 ~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 416 (453)
-.|+..+--.+..++.+.... .+++.++++..+.+..-.....-.|..++.+.|++++|.++.+.+. .+.|+-
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL--~~eP~N 111 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF--EHERNN 111 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH--TTCTTC
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH--hhCCCC
Confidence 344555555555555555543 3566677666655421223445555667777777777777777777 445553
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.40 E-value=18 Score=33.46 Aligned_cols=240 Identities=9% Similarity=-0.005 Sum_probs=136.3
Q ss_pred cChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHc-CCCcChhh--HHHHHHHHHhcCChhH--HHHHHHHHHh--CC-CC
Q 039177 167 VDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKL-GFCFGMVD--YTNVIRSLVKKEKVFD--ALGILNQMKS--DG-IK 238 (453)
Q Consensus 167 p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~--~~~li~~~~~~g~~~~--a~~~~~~m~~--~~-~~ 238 (453)
-.......++..|...+++ +...+.+..+.+. |......+ .+.++.........+. -+.+.+.+.. .| +-
T Consensus 54 s~~r~l~~iv~l~~~~~~~--~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kif 131 (445)
T 4b4t_P 54 SSKEVLAKIVDLLASRNKW--DDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIF 131 (445)
T ss_dssp TCHHHHHHHHHHHHHHSCH--HHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCC
T ss_pred hHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchH
Confidence 3455677788888888888 7776666555443 43222222 2223333333333332 2222222211 11 11
Q ss_pred C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CC
Q 039177 239 P---DIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPD-----VYTYNVYINGLCKQNNVEAGIKMIACMEE----LG 306 (453)
Q Consensus 239 ~---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~ 306 (453)
. .......|...+...|++.+|..++..+...-...+ ...+..-+..|...+++..|..++..+.. ..
T Consensus 132 lE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~ 211 (445)
T 4b4t_P 132 VEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP 211 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC
Confidence 1 123345678889999999999999999864311121 34567778889999999999999988642 22
Q ss_pred CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCcCHHHHHHH----HHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 039177 307 SKPD--VITYNTLLQALCKVRELNRLRELVKEMKWK-GIVLNLQTYSIM----IDGLASKGDIIEACGLLEEALNKGLCT 379 (453)
Q Consensus 307 ~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~~~~~ 379 (453)
..|+ ...+...+..+...+++.+|.+.|.++... ...-|...+..+ +.+..-.+..+.-..++.........+
T Consensus 212 ~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~ 291 (445)
T 4b4t_P 212 KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLK 291 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCH
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhccccc
Confidence 2222 235677788888899999999888887653 111133222221 111122222222233333333333345
Q ss_pred ChhhHHHHHHHHHhC--CCHHHHHHHHHHHh
Q 039177 380 QSSMFDETICGLCQR--GLVRKALELLKQMA 408 (453)
Q Consensus 380 ~~~~~~~li~~~~~~--g~~~~A~~~~~~m~ 408 (453)
+...|..++.+|... .+++...+.|....
T Consensus 292 ~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 292 KLESQESLVKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHHHHHHHHHHHHHCCSSSHHHHHHHTCSST
T ss_pred ccHHHHHHHHHHHhchHhhhHHHHHHHHHHh
Confidence 667788888888765 35666666665543
No 248
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.37 E-value=7.2 Score=28.88 Aligned_cols=46 Identities=13% Similarity=0.162 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 039177 364 EACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMAD 409 (453)
Q Consensus 364 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (453)
+..+-++.+...++.|++.+....+.+|.+.+++.-|+++|+-.+.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444444555666666666666666666666666666665554
No 249
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.17 E-value=5.9 Score=27.66 Aligned_cols=46 Identities=13% Similarity=0.162 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 039177 364 EACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMAD 409 (453)
Q Consensus 364 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (453)
+..+-++.+...++.|.+.+..+.+.+|.+.+++.-|+++|+-.+.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444444445555555555555555555555555555555443
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=84.40 E-value=2.3 Score=32.99 Aligned_cols=131 Identities=8% Similarity=0.034 Sum_probs=71.9
Q ss_pred cCCCCChh--hHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCC-------HHHHHHHHHHHHhcCChhHHHHHHhhccc
Q 039177 74 YNCEPPPE--AYHFVIKTLAENSQFCDISSVLDHIEKRENFETP-------EFIFIDLIKTYADAHRFQDSVNLFYKIPK 144 (453)
Q Consensus 74 ~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 144 (453)
.|..|... ++-.-++.+...+.++.|+-+.+.+....+..++ ..++..+.+++...|++..|...|++
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~q--- 88 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTM--- 88 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH---
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHH---
Confidence 44555443 3445677888899999999888876654222333 23667788899999999999999887
Q ss_pred CCCCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhH
Q 039177 145 FRINRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFD 224 (453)
Q Consensus 145 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 224 (453)
|+++-+.+.+. ++. ...+ ...... .. ......+...-.-+..+|.+.+++++
T Consensus 89 --------ALq~~k~l~k~---~s~--~~~~----~~~ss~--p~---------s~~~~~e~Elkykia~C~~~l~~~~~ 140 (167)
T 3ffl_A 89 --------ALQQKKALSKT---SKV--RPST----GNSAST--PQ---------SQCLPSEIEVKYKLAECYTVLKQDKD 140 (167)
T ss_dssp --------HHHHHHCC----------------------------------------CCCCHHHHHHHHHHHHHHTTCHHH
T ss_pred --------HHHHHHHHhcC---CCc--cccc----cccCCC--cc---------cccccchHHHHHHHHHHHHHHCCHHH
Confidence 33333322221 111 1111 000000 00 01122345555557788889999999
Q ss_pred HHHHHHHHHhC
Q 039177 225 ALGILNQMKSD 235 (453)
Q Consensus 225 a~~~~~~m~~~ 235 (453)
|+.+++.+..+
T Consensus 141 Ai~~Le~Ip~k 151 (167)
T 3ffl_A 141 AIAILDGIPSR 151 (167)
T ss_dssp HHHHHHTSCGG
T ss_pred HHHHHhcCCch
Confidence 99998876543
No 251
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=83.13 E-value=13 Score=27.98 Aligned_cols=65 Identities=12% Similarity=0.076 Sum_probs=28.5
Q ss_pred cCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHh
Q 039177 344 LNLQTYSIMIDGLASKGDI---IEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMA 408 (453)
Q Consensus 344 p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (453)
|+..+--.+..++.+.... .+++.++++....+..-.....-.|..++.+.|++++|.++.+.++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444444444444444332 2344455544443211122233334445555555555555555555
No 252
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.73 E-value=17 Score=33.42 Aligned_cols=98 Identities=11% Similarity=-0.030 Sum_probs=67.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCChhh--H
Q 039177 207 VDYTNVIRSLVKKEKVFDALGILNQMKSD--GIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLV---LGLVPDVYT--Y 279 (453)
Q Consensus 207 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~---~g~~~~~~~--~ 279 (453)
.+...+...|.+.|+++.|.+.|.++... +..--...+-.+++.+...+++..+...+.+... .+-.++... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 36778889999999999999999998864 3333456777888889999999999988888754 222222211 0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 280 NVYINGLCKQNNVEAGIKMIACMEE 304 (453)
Q Consensus 280 ~~li~~~~~~~~~~~a~~~~~~m~~ 304 (453)
..-...+...+++..|...|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1111123457888888888877654
No 253
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=79.10 E-value=37 Score=30.72 Aligned_cols=168 Identities=8% Similarity=-0.086 Sum_probs=95.4
Q ss_pred hHhHHHHHHHHHhcCCCChHHHHHHHHHHHHc-CCCc---ChhhHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCCCHHH
Q 039177 169 GKTCSLILSSVCEQRDLSSDELLGFVQEMKKL-GFCF---GMVDYTNVIRSLVKK-EKVFDALGILNQMKSDGIKPDIVC 243 (453)
Q Consensus 169 ~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~-g~~~---~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~ 243 (453)
......|...|.+.|+. ++..+++...... +.-+ ..-....+++.+... +..+.-.++..+..+..-. .-.+
T Consensus 19 e~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~ 95 (394)
T 3txn_A 19 EQGILQQGELYKQEGKA--KELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRT 95 (394)
T ss_dssp HHHHHHHHHHHHHHTCH--HHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCH
T ss_pred HHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHH
Confidence 34667777888888887 7777766654332 1111 223356777777664 3334444444444332100 2223
Q ss_pred H------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC
Q 039177 244 Y------TMVLNGVIVQEDYVKAEELFDELLVLGLVPD-----VYTYNVYINGLCKQNNVEAGIKMIACMEEL--GSKPD 310 (453)
Q Consensus 244 ~------~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~ 310 (453)
| .-++..|...|++.+|..++..+.+.--..| ...+..-+..|...+++.++...+...... .+.++
T Consensus 96 flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~ 175 (394)
T 3txn_A 96 FLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCP 175 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCC
Confidence 3 1467778888888888888888766322222 223455566677888888888888766532 12234
Q ss_pred HHHHHHH----HHHHH-hcCCHHHHHHHHHHHHH
Q 039177 311 VITYNTL----LQALC-KVRELNRLRELVKEMKW 339 (453)
Q Consensus 311 ~~~~~~l----i~~~~-~~~~~~~a~~~~~~~~~ 339 (453)
+.+...+ .-.+. ..+++..|...|-+..+
T Consensus 176 p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 176 PKVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 4332221 22344 67888888877776643
No 254
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=78.72 E-value=6.8 Score=33.18 Aligned_cols=176 Identities=13% Similarity=0.051 Sum_probs=74.4
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhh--HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---HHHHHHHH
Q 039177 175 ILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVD--YTNVIRSLVKKEKVFDALGILNQMKSDGIKPDI---VCYTMVLN 249 (453)
Q Consensus 175 ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~ 249 (453)
.|...+..|+. + +++.+.+.|..++... ..+.+...+..|+.+ +++.+.+.|..++. .-++. +.
T Consensus 42 ~L~~A~~~g~~--~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~-L~ 110 (285)
T 1wdy_A 42 PLHNAVQMSRE--D----IVELLLRHGADPVLRKKNGATPFLLAAIAGSVK----LLKLFLSKGADVNECDFYGFTA-FM 110 (285)
T ss_dssp HHHHHHHTTCH--H----HHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHH----HHHHHHHTTCCTTCBCTTCCBH-HH
T ss_pred HHHHHHHcCCH--H----HHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCCccCcccCCH-HH
Confidence 34444555654 3 3344455554443211 123334445556654 34444445544332 22223 33
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhh------------HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHH
Q 039177 250 GVIVQEDYVKAEELFDELLVLGLVPDVYT------------YNVYINGLCKQNNVEAGIKMIACMEELGSKPD---VITY 314 (453)
Q Consensus 250 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~------------~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~ 314 (453)
..+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+..+++. .|..++ ....
T Consensus 111 ~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~ 183 (285)
T 1wdy_A 111 EAAVYGKVK----ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE---MGADVNACDNMGR 183 (285)
T ss_dssp HHHHTTCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSC
T ss_pred HHHHhCCHH----HHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHh---cCCCCCccCCCCC
Confidence 344556654 3444455554443220 11233344556665544433332 133222 1122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH---HHHHHHHHHHhcCCHHHHHHHHH
Q 039177 315 NTLLQALCKVRELNRLRELVKEMKWKGIVLNLQ---TYSIMIDGLASKGDIIEACGLLE 370 (453)
Q Consensus 315 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~ 370 (453)
+.+.. .+..++......+.+.+.+.|..++.. -.+. +...++.|+.+-+..+++
T Consensus 184 t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 184 NALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTP-LILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp CHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCH-HHHHHHTTCHHHHHHHHH
T ss_pred CHHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcH-HHHHHHcCCHHHHHHHHh
Confidence 22322 234455444556666666666544321 1122 233344566554444443
No 255
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=78.32 E-value=6.9 Score=33.06 Aligned_cols=114 Identities=7% Similarity=0.039 Sum_probs=67.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--cCHHHHHHHHHHHHhcCCH
Q 039177 285 GLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIV--LNLQTYSIMIDGLASKGDI 362 (453)
Q Consensus 285 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~ 362 (453)
...+.|.+++++.....-++... -|...-..+++.+|-.|+++.|.+-++...+.... |...+|..+|.+-
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P-~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE------ 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA------ 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH------
T ss_pred HHHhCCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH------
Confidence 45677888888888777776542 36667777888888888888888888877766322 2233444444431
Q ss_pred HHHHHHHHHHHHCCCCC-----ChhhHHHHHHHHH--hCCCHHHHHHHHHHHhh
Q 039177 363 IEACGLLEEALNKGLCT-----QSSMFDETICGLC--QRGLVRKALELLKQMAD 409 (453)
Q Consensus 363 ~~A~~~~~~m~~~~~~~-----~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~ 409 (453)
..=.++..-+-.| ...-...++.+.. ..|+.++|.++-.+..+
T Consensus 79 ----~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 79 ----QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp ----HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 1112222222111 1223344454443 45888888888777654
No 256
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=78.17 E-value=12 Score=26.06 Aligned_cols=78 Identities=14% Similarity=0.068 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHH
Q 039177 326 ELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLK 405 (453)
Q Consensus 326 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 405 (453)
..++|..|-+.+...+. ...+--+=+..+...|++++|..+.+.. ..||...|..|- -.+.|..+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALC--EYRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHH--HHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHHH
Confidence 46777777777766643 2222222234566777888777776544 256666554433 346677777777776
Q ss_pred HHhhCC
Q 039177 406 QMADKD 411 (453)
Q Consensus 406 ~m~~~~ 411 (453)
++..+|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 665443
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.10 E-value=17 Score=33.51 Aligned_cols=99 Identities=9% Similarity=-0.044 Sum_probs=64.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCcCHHH--H
Q 039177 277 YTYNVYINGLCKQNNVEAGIKMIACMEELGSKP--DVITYNTLLQALCKVRELNRLRELVKEMKWK---GIVLNLQT--Y 349 (453)
Q Consensus 277 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~--~ 349 (453)
.+...+...|.+.|+++.|.++|.++...-..+ -...+-.+++.+...+++..+...+..+... +..|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 356778888889999999999998887642222 2456777888888888988888888877543 22222221 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 350 SIMIDGLASKGDIIEACGLLEEALNK 375 (453)
Q Consensus 350 ~~li~~~~~~g~~~~A~~~~~~m~~~ 375 (453)
..-...+...+++..|.+.|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11122234567788877777666443
No 258
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=76.90 E-value=37 Score=29.53 Aligned_cols=128 Identities=10% Similarity=0.034 Sum_probs=66.7
Q ss_pred HHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHc----C--CCcChhhHHHHHHHHHhcCChhHHHHHH
Q 039177 156 ILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKL----G--FCFGMVDYTNVIRSLVKKEKVFDALGIL 229 (453)
Q Consensus 156 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~----g--~~~~~~~~~~li~~~~~~g~~~~a~~~~ 229 (453)
+.+...+.++++|......++..+......+ ..-.++.+.+.+. | -.-+...+..+...|.+.|++.+|..-|
T Consensus 79 lvev~~~~~~~~~~~~~~rl~~l~~~~p~~~-~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 79 LLEVYDLAEVKVDDISVARLVRLIAELDPSE-PNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHHHTTCCCSHHHHHHHHHHHTTCCTTC-TTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCCC-chHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 3444555677788777777777666544332 1223344444432 2 1125566777778888888887777765
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039177 230 NQMKSDGIKPDIVCYTMVLNGVIVQ---EDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACME 303 (453)
Q Consensus 230 ~~m~~~~~~~~~~~~~~ll~~~~~~---g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 303 (453)
-.-. .-|...+..++--+... |...++- ...-.+ +-.|.-.++...|..+|+...
T Consensus 158 i~~~----~~s~~~~a~~l~~w~~~~~~~~~~e~d--------------lf~~Ra-VL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 158 MLGT----HDSMIKYVDLLWDWLCQVDDIEDSTVA--------------EFFSRL-VFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HTSC----HHHHHHHHHHHHHHHHHTTCCCHHHHH--------------HHHHHH-HHHHHHTTBHHHHHHHHHHHH
T ss_pred HhCC----CccHHHHHHHHHHHHHhcCCCCcchHH--------------HHHHHH-HHHHHHhcCHHHHHHHHHHHH
Confidence 4111 01344444444444333 3332211 111122 223556667777777776554
No 259
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=75.80 E-value=29 Score=27.86 Aligned_cols=56 Identities=21% Similarity=0.061 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 039177 325 RELNRLRELVKEMKWKGIVL-NLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQ 380 (453)
Q Consensus 325 ~~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 380 (453)
++..+...+|..|..+|+.- -...|......+...|++.+|.++|+.-++.+-.|-
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 33556666666666554432 233455555555566666666666666666555553
No 260
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=73.74 E-value=45 Score=29.00 Aligned_cols=112 Identities=11% Similarity=0.059 Sum_probs=60.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHCCCCCChhhHHHHHH
Q 039177 209 YTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEE----LFDELLVLGLVPDVYTYNVYIN 284 (453)
Q Consensus 209 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~----~~~~m~~~g~~~~~~~~~~li~ 284 (453)
|.++..=|.+.+++++|++++..-.. .+.+.|+...|-+ +.+-+.+.+.+++......++.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 44555566666777777666543321 2333455443333 3444445566666666666666
Q ss_pred HHHhcCCHH-HHHHHHHHHH----HCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039177 285 GLCKQNNVE-AGIKMIACME----ELG--SKPDVITYNTLLQALCKVRELNRLRELVK 335 (453)
Q Consensus 285 ~~~~~~~~~-~a~~~~~~m~----~~~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 335 (453)
.+.....-+ .=.++.+.++ +.| ..-|......+...|.+.|++.+|+..|-
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 555432111 1122222222 222 12366777788888888888888887764
No 261
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=73.07 E-value=26 Score=25.95 Aligned_cols=67 Identities=18% Similarity=0.187 Sum_probs=37.8
Q ss_pred CcChhhHHHHHHHHHhcCCh---hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 203 CFGMVDYTNVIRSLVKKEKV---FDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLV 269 (453)
Q Consensus 203 ~~~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 269 (453)
.|+..+--.+..++++..+. .+++.+++++.+.+..-....+--|.-++.+.|+++.|.+..+.+++
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44555555555555555443 35666666666544221233344455566677777777777776666
No 262
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=72.28 E-value=10 Score=26.31 Aligned_cols=78 Identities=14% Similarity=0.023 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHH
Q 039177 326 ELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLK 405 (453)
Q Consensus 326 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 405 (453)
..++|..|-+.+...+. ...+--+=+..+...|++++|..+.+.. ..||...|..| +-.+.|..+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~AL--ce~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFAL--CEWHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHH--HHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHH--HHHhcccHHHHHHHHH
Confidence 46777777777776643 2222222234566778888887776543 35666655443 3347777777777776
Q ss_pred HHhhCC
Q 039177 406 QMADKD 411 (453)
Q Consensus 406 ~m~~~~ 411 (453)
++..+|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 766544
No 263
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=71.49 E-value=44 Score=29.71 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=12.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 039177 350 SIMIDGLASKGDIIEACGLLEEA 372 (453)
Q Consensus 350 ~~li~~~~~~g~~~~A~~~~~~m 372 (453)
..++.=|...|+.++|.+.++++
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL 243 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKEL 243 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHc
Confidence 44444555555555555555554
No 264
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=71.23 E-value=23 Score=24.62 Aligned_cols=89 Identities=13% Similarity=0.076 Sum_probs=51.9
Q ss_pred cCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 039177 182 QRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAE 261 (453)
Q Consensus 182 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 261 (453)
.|..-.++|..|-+.+...+. ...+--.-+..+...|++++|..+.+.+. .||...|-+|.. .+.|..+++.
T Consensus 17 TG~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le 88 (115)
T 2uwj_G 17 SGQHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALD 88 (115)
T ss_dssp HTTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHH
Confidence 343333677777666666542 11121222345667788888877665543 677777766543 3667777777
Q ss_pred HHHHHHHHCCCCCChhhH
Q 039177 262 ELFDELLVLGLVPDVYTY 279 (453)
Q Consensus 262 ~~~~~m~~~g~~~~~~~~ 279 (453)
..+.++..+| .|....|
T Consensus 89 ~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 89 RRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHHHTCS-SHHHHHH
T ss_pred HHHHHHHhCC-CHHHHHH
Confidence 7777776665 3444444
No 265
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=70.80 E-value=33 Score=27.53 Aligned_cols=67 Identities=21% Similarity=0.206 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCC
Q 039177 348 TYSIMIDGLASKGDIIEACGLLEEALNKGLCTQ-SSMFDETICGLCQRGLVRKALELLKQMADKDVSPG 415 (453)
Q Consensus 348 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 415 (453)
.|-..++.+ .++...++..+|.-|..+|+-.. ...|......+...|++.+|.++|+.-++.+-.|-
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 344444433 24557899999999999876544 34588888899999999999999999999888883
No 266
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=70.56 E-value=24 Score=24.56 Aligned_cols=89 Identities=15% Similarity=0.057 Sum_probs=51.4
Q ss_pred cCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 039177 182 QRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAE 261 (453)
Q Consensus 182 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 261 (453)
.|..-.++|..|-+.+...+. ...+--.-+..+...|++++|..+.+.+. .||...|-+|.. .+.|..+++.
T Consensus 18 TG~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le 89 (116)
T 2p58_C 18 TGNHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALE 89 (116)
T ss_dssp HTTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHH
Confidence 343333677777666666542 11111222345667788888877766554 677777766543 3567777777
Q ss_pred HHHHHHHHCCCCCChhhH
Q 039177 262 ELFDELLVLGLVPDVYTY 279 (453)
Q Consensus 262 ~~~~~m~~~g~~~~~~~~ 279 (453)
..+.++..+| .|....|
T Consensus 90 ~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 90 SRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHHTTCC-CHHHHHH
T ss_pred HHHHHHHhCC-CHHHHHH
Confidence 7776666655 3444444
No 267
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=70.12 E-value=1e+02 Score=31.57 Aligned_cols=152 Identities=11% Similarity=0.029 Sum_probs=63.9
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCChhhH--HHHHHHHHhcCC
Q 039177 216 LVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLN--GVIVQEDYVKAEELFDELLVLGLVPDVYTY--NVYINGLCKQNN 291 (453)
Q Consensus 216 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~--~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~--~~li~~~~~~~~ 291 (453)
|+-.|+-+-...++..+.+.. +......+.- ++...|+.+.+..+.+.+.... .|....- .++.-+|+..|+
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCC
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCC
Confidence 334455555555555544421 2222222222 2334566666666666655421 1111111 122334556666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 039177 292 VEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDI-IEACGLLE 370 (453)
Q Consensus 292 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~ 370 (453)
.....+++..+.... ..++.-...+.-++...|+.+.+.+++..+.+.+ .|...--.++.-+....|.. .+|..++.
T Consensus 576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 665555666665531 1112222222223333455555555554444432 23333333333333333332 34555555
Q ss_pred HHH
Q 039177 371 EAL 373 (453)
Q Consensus 371 ~m~ 373 (453)
.+.
T Consensus 654 ~L~ 656 (963)
T 4ady_A 654 PLT 656 (963)
T ss_dssp HHH
T ss_pred HHc
Confidence 554
No 268
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=69.88 E-value=64 Score=29.15 Aligned_cols=236 Identities=8% Similarity=0.005 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHhhcccCC-CCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHH
Q 039177 117 FIFIDLIKTYADAHRFQDSVNLFYKIPKFR-INRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQ 195 (453)
Q Consensus 117 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~ 195 (453)
.....|...|.+.|+.++..+++......- .-.-..+-+ ....++..+....+.. +.-.++..
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k---------------~v~~l~~~~~~~~~~~-~~~~~~~~ 83 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAK---------------LVRSLVDMFLDMDAGT-GIEVQLCK 83 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHH---------------HHHHHHHHHTTSCCCH-HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHH---------------HHHHHHHHHhcCCCcH-HHHHHHHH
Confidence 356678899999999999998887765431 011111222 3334444444433321 22233333
Q ss_pred HHHHcCCCcChhhH------HHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHH
Q 039177 196 EMKKLGFCFGMVDY------TNVIRSLVKKEKVFDALGILNQMKSDGIKPD-----IVCYTMVLNGVIVQEDYVKAEELF 264 (453)
Q Consensus 196 ~~~~~g~~~~~~~~------~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~ 264 (453)
+..+..- -.-.+| .-++..|...|++.+|.+++..+.+.--+.| ...|..-+..|...+++..+...+
T Consensus 84 ~~~~~a~-~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l 162 (394)
T 3txn_A 84 DCIEWAK-QEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAAL 162 (394)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3322210 011222 3678899999999999999988876311212 234556667788899999999988
Q ss_pred HHHHHC--CCCCChhhHHHH----HHHHH-hcCCHHHHHHHHHHHHHC-C-C-CC---CHHHHHHHHHHHHhcCCHHHHH
Q 039177 265 DELLVL--GLVPDVYTYNVY----INGLC-KQNNVEAGIKMIACMEEL-G-S-KP---DVITYNTLLQALCKVRELNRLR 331 (453)
Q Consensus 265 ~~m~~~--g~~~~~~~~~~l----i~~~~-~~~~~~~a~~~~~~m~~~-~-~-~p---~~~~~~~li~~~~~~~~~~~a~ 331 (453)
...... .+.+++..-..+ .-.+. ..+++..|...|-+..+. . . .| +...|..|.... . ++..+..
T Consensus 163 ~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl-~-~~r~el~ 240 (394)
T 3txn_A 163 TSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM-L-GQSDDVN 240 (394)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH-T-TCGGGHH
T ss_pred HHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH-c-CCHHHHH
Confidence 877542 222333332221 12245 788999998877665421 1 0 01 112333332222 2 2222222
Q ss_pred HHHH-HHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039177 332 ELVK-EMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEA 372 (453)
Q Consensus 332 ~~~~-~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 372 (453)
.++. .....-..|....+..++.+|. .+++.+...+++..
T Consensus 241 ~~l~~~~~~~~~~pei~~l~~L~~a~~-~~dl~~f~~iL~~~ 281 (394)
T 3txn_A 241 QLVSGKLAITYSGRDIDAMKSVAEASH-KRSLADFQAALKEY 281 (394)
T ss_dssp HHHHSHHHHTTCSHHHHHHHHHHHHHH-TTCHHHHHHHHHHS
T ss_pred HHhccccccccCCccHHHHHHHHHHHH-hCCHHHHHHHHHHH
Confidence 2222 2111113455556666777654 46666666655544
No 269
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=69.60 E-value=17 Score=30.65 Aligned_cols=114 Identities=16% Similarity=0.120 Sum_probs=73.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhc
Q 039177 249 NGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVI----TYNTLLQALCKV 324 (453)
Q Consensus 249 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~li~~~~~~ 324 (453)
....+.|+++++++....-++.. +-|...-..++..+|-.|+++.|.+-++...+.. |+.. +|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~--p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHH----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHHHHH----
Confidence 34567888999998888877765 4567777788889999999999998888887743 4432 34444433
Q ss_pred CCHHHHHHHHHHHHHCCC-----CcCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHC
Q 039177 325 RELNRLRELVKEMKWKGI-----VLNLQTYSIMIDGLAS--KGDIIEACGLLEEALNK 375 (453)
Q Consensus 325 ~~~~~a~~~~~~~~~~~~-----~p~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~ 375 (453)
+..=.++..-+- .........|+.+... .|+.++|..+-+.+.+.
T Consensus 78 ------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 222222222222 2233455666666543 58899888888877554
No 270
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=69.08 E-value=38 Score=26.21 Aligned_cols=117 Identities=6% Similarity=-0.050 Sum_probs=62.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCcCH-HH
Q 039177 279 YNVYINGLCKQNNVEAGIKMIACMEELG-SKPDV-------ITYNTLLQALCKVRELNRLRELVKEMKWK-GIVLNL-QT 348 (453)
Q Consensus 279 ~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~p~~-~~ 348 (453)
+-.-+......|.++.|+-+.+.+.... ..|+. .++..+.+++...+++..|...|++.++. ..-+.. .+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3344566777788887777766644321 12331 25566677777888888888888876543 111111 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHh
Q 039177 349 YSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMA 408 (453)
Q Consensus 349 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (453)
+..+- . ...... ......+...--.+..+|.+.|++++|+.+++...
T Consensus 103 ~~~~~-~---~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 103 RPSTG-N---SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred ccccc-c---cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 11110 0 000000 01122233444447788999999999999887654
No 271
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=68.79 E-value=26 Score=29.82 Aligned_cols=113 Identities=10% Similarity=-0.020 Sum_probs=47.9
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhh--HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH---HHHHHHH
Q 039177 175 ILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVD--YTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIV---CYTMVLN 249 (453)
Q Consensus 175 ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~ 249 (453)
.+...+..|+. +-+ +.+.+.|..++... -.+.+...+..|+.+-+..+++. |..++.. -+.+.+.
T Consensus 65 ~L~~A~~~g~~--~~v----~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~ 134 (285)
T 3kea_A 65 PLHQAATLEDT--KIV----KILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK----NWRLMFYGKTGWKTSFY 134 (285)
T ss_dssp HHHHHTTSSSC--HHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH----CGGGGGCSSSGGGSHHH
T ss_pred HHHHHHHcCCH--HHH----HHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc----CCCCCccCCCCCCCHHH
Confidence 34445556665 333 33344554333211 11233344555665544433333 3322221 1123344
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHH
Q 039177 250 GVIVQEDYVKAEELFDELLVLGLVPDVY-TYNVYINGLCKQNNVEAGIKMIAC 301 (453)
Q Consensus 250 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~ 301 (453)
..+..|+.+- .+.+.+.|..+... .-.+.+...+..|+.+-+.-+++.
T Consensus 135 ~A~~~~~~~~----v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 135 HAVMLNDVSI----VSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHTTCHHH----HHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHH----HHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 4445565543 33334444322111 223344445566666655555544
No 272
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=67.88 E-value=12 Score=30.65 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=11.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhCC
Q 039177 214 RSLVKKEKVFDALGILNQMKSDG 236 (453)
Q Consensus 214 ~~~~~~g~~~~a~~~~~~m~~~~ 236 (453)
...++.|+.+.+..+++.+.+.|
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC
Confidence 33444555555555555444443
No 273
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=65.65 E-value=1e+02 Score=29.88 Aligned_cols=176 Identities=6% Similarity=-0.114 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHcCCCcChhhHH----HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 039177 188 DELLGFVQEMKKLGFCFGMVDYT----NVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEEL 263 (453)
Q Consensus 188 ~~a~~~~~~~~~~g~~~~~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 263 (453)
+.|...+....+.. ..+..... .+...+...+...++...+....... .+.......+....+.|+++.|...
T Consensus 231 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~ 307 (618)
T 1qsa_A 231 ENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTW 307 (618)
T ss_dssp HHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHH
Confidence 77777777765543 22333322 22223333443445556666544432 2333333444445567888888888
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------------CCCC-------C-----HHH---HHH
Q 039177 264 FDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEEL------------GSKP-------D-----VIT---YNT 316 (453)
Q Consensus 264 ~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------------~~~p-------~-----~~~---~~~ 316 (453)
|+.|..... ......--+..++...|+.++|..+|..+.+. |..+ + ... -..
T Consensus 308 ~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (618)
T 1qsa_A 308 LARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMA 386 (618)
T ss_dssp HHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHH
T ss_pred HHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChHHH
Confidence 887755221 12222334555667788888888888776541 1110 0 000 112
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039177 317 LLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLE 370 (453)
Q Consensus 317 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 370 (453)
-+..+...|....|...|..+.+. . +......+.......|..+.++....
T Consensus 387 r~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 387 RVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 234455667777777777766654 1 22333344444455666666654443
No 274
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=65.61 E-value=70 Score=28.06 Aligned_cols=166 Identities=13% Similarity=0.017 Sum_probs=79.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHCCCCCChhhHHHHHH
Q 039177 209 YTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEE----LFDELLVLGLVPDVYTYNVYIN 284 (453)
Q Consensus 209 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~----~~~~m~~~g~~~~~~~~~~li~ 284 (453)
|.++..=|.+.+++++|++++..-. ..+.+.|+...|-+ +++-+.+.++++|......++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4455555666666666666543321 11223344333222 2233344555555555555555
Q ss_pred HHHhcCCHH-HHHHHHHHHH----HCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 039177 285 GLCKQNNVE-AGIKMIACME----ELG--SKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLA 357 (453)
Q Consensus 285 ~~~~~~~~~-~a~~~~~~m~----~~~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 357 (453)
.+.....-+ .=..+.+.++ +.| ..-|......+...|.+.+++.+|+..|- .|-.+....|..++.-+.
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~ 178 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWY 178 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHH
Confidence 554443211 1112222222 222 23366677778888888888888887772 233333355544444333
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHh
Q 039177 358 SKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMA 408 (453)
Q Consensus 358 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (453)
..+...++--+ ....+--|.-.|+...|..+++...
T Consensus 179 ~~~~~~e~dlf---------------iaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 179 KQDESHTAPLY---------------CARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HTSCGGGHHHH---------------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhcCCccHHHH---------------HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33322211111 1122334555667777776665554
No 275
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=65.41 E-value=1.3e+02 Score=30.90 Aligned_cols=119 Identities=13% Similarity=0.006 Sum_probs=61.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCcCHHHH--HHHHHHHHhcCC
Q 039177 286 LCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQA--LCKVRELNRLRELVKEMKWKGIVLNLQTY--SIMIDGLASKGD 361 (453)
Q Consensus 286 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~p~~~~~--~~li~~~~~~g~ 361 (453)
|...|+.+....++..+.+. .+..+...+.-+ +...|+.+.+..+.+.+... ..|....- .++..+|+..|+
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCC
T ss_pred hcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCC
Confidence 44566777667777666553 233333333333 33567777777777766653 12222221 233445666777
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 039177 362 IIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMAD 409 (453)
Q Consensus 362 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (453)
.....+++..+.... ..+..-...+.-++...|+.+.+.++++.+.+
T Consensus 576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~ 622 (963)
T 4ady_A 576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK 622 (963)
T ss_dssp HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG
T ss_pred HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh
Confidence 766666777766542 22233233333344445665555555554443
No 276
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=65.12 E-value=41 Score=25.22 Aligned_cols=67 Identities=18% Similarity=0.187 Sum_probs=35.9
Q ss_pred CcChhhHHHHHHHHHhcCCh---hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039177 203 CFGMVDYTNVIRSLVKKEKV---FDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLV 269 (453)
Q Consensus 203 ~~~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 269 (453)
.++..+--.+..++++.... .+++.+++++...+..-.....-.|.-++.+.|+++.|.+..+.+++
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 35555555555556655443 34566666665543221222333344466666666666666666666
No 277
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=62.32 E-value=7.7 Score=31.79 Aligned_cols=17 Identities=24% Similarity=-0.089 Sum_probs=7.8
Q ss_pred HHHhCCCHHHHHHHHHH
Q 039177 390 GLCQRGLVRKALELLKQ 406 (453)
Q Consensus 390 ~~~~~g~~~~A~~~~~~ 406 (453)
...+.|+.+-+.-+++.
T Consensus 216 ~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 216 LAKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHh
Confidence 33445555544444443
No 278
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=59.79 E-value=37 Score=26.20 Aligned_cols=50 Identities=12% Similarity=0.158 Sum_probs=22.0
Q ss_pred HHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 039177 330 LRELVKEMKWKGIVL-NLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCT 379 (453)
Q Consensus 330 a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 379 (453)
...+|..|..+|+.- -...|......+...|++.+|.++|+.-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 344444444443322 12234444444444455555555555444444444
No 279
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=59.45 E-value=20 Score=30.17 Aligned_cols=214 Identities=13% Similarity=0.097 Sum_probs=105.3
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChh---hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---HHHHHH
Q 039177 174 LILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMV---DYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDI---VCYTMV 247 (453)
Q Consensus 174 ~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~l 247 (453)
..+...++.|+. +.+ +.+.+.|..++.. .-.+.+...+..|+.+- ++.+.+.|..++. .-.+ .
T Consensus 7 ~~L~~A~~~g~~--~~v----~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t-~ 75 (285)
T 1wdy_A 7 HLLIKAVQNEDV--DLV----QQLLEGGANVNFQEEEGGWTPLHNAVQMSREDI----VELLLRHGADPVLRKKNGAT-P 75 (285)
T ss_dssp HHHHHHHHTTCH--HHH----HHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTCCC-H
T ss_pred hHHHHHHHcCCH--HHH----HHHHHcCCCcccccCCCCCcHHHHHHHcCCHHH----HHHHHHcCCCCcccCCCCCC-H
Confidence 445556677776 433 3445556444322 12345566667777654 4444555554432 2223 3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------------
Q 039177 248 LNGVIVQEDYVKAEELFDELLVLGLVPDV---YTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVI------------ 312 (453)
Q Consensus 248 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~------------ 312 (453)
+...+..|+.+ +++.+.+.|..++. ..++.+ ...+..|+.+ +++.+.+.|..++..
T Consensus 76 L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~ 146 (285)
T 1wdy_A 76 FLLAAIAGSVK----LLKLFLSKGADVNECDFYGFTAF-MEAAVYGKVK----ALKFLYKRGANVNLRRKTKEDQERLRK 146 (285)
T ss_dssp HHHHHHHTCHH----HHHHHHHTTCCTTCBCTTCCBHH-HHHHHTTCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTC
T ss_pred HHHHHHcCCHH----HHHHHHHcCCCCCccCcccCCHH-HHHHHhCCHH----HHHHHHHhCCCcccccccHHHHHhhcc
Confidence 33444556654 44455556655442 223333 3445667655 445555555544321
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh--HHH
Q 039177 313 TYNTLLQALCKVRELNRLRELVKEMKWK-GIVLN---LQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSM--FDE 386 (453)
Q Consensus 313 ~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~--~~~ 386 (453)
.-...+...+..|+.+-+..+ .+. |..++ ..-.+.+..+ +..|......++++.+.+.|..++... -..
T Consensus 147 ~g~t~L~~A~~~~~~~~v~~L----l~~~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t 221 (285)
T 1wdy_A 147 GGATALMDAAEKGHVEVLKIL----LDEMGADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVNVRGERGKT 221 (285)
T ss_dssp CCCCHHHHHHHHTCHHHHHHH----HHTSCCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCC
T ss_pred CCCcHHHHHHHcCCHHHHHHH----HHhcCCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCCCcCCCCCc
Confidence 011334445566776544444 433 44333 2233444444 445665555667777777776655421 122
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhCCCCCC
Q 039177 387 TICGLCQRGLVRKALELLKQMADKDVSPG 415 (453)
Q Consensus 387 li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 415 (453)
.+...++.|+.+-+..+++. .|..++
T Consensus 222 ~L~~A~~~~~~~~v~~Ll~~---~g~~~~ 247 (285)
T 1wdy_A 222 PLILAVEKKHLGLVQRLLEQ---EHIEIN 247 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHS---SSCCTT
T ss_pred HHHHHHHcCCHHHHHHHHhc---cCCCcc
Confidence 34455566776544433332 465554
No 280
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=58.48 E-value=56 Score=25.58 Aligned_cols=53 Identities=6% Similarity=-0.057 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHcCCCcChhh---HHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCC
Q 039177 188 DELLGFVQEMKKLGFCFGMVD---YTNVIRSLVK-KEKVFDALGILNQMKSDGIKPD 240 (453)
Q Consensus 188 ~~a~~~~~~~~~~g~~~~~~~---~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~~~ 240 (453)
+.-.++.+.+.+.|..++... ++.|..++.. ..+.....++.+.+.+.|..++
T Consensus 52 ~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 52 EARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS
T ss_pred chHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC
Confidence 333445555666665444321 2222222221 1223334455555555554443
No 281
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=58.20 E-value=1e+02 Score=27.40 Aligned_cols=77 Identities=9% Similarity=0.064 Sum_probs=36.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 039177 280 NVYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRE--LNRLRELVKEMKWKGIVLNLQTYSIMIDGLA 357 (453)
Q Consensus 280 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 357 (453)
+.++.-|...++.++|.+.++++...... ...+...+..+.-+.++ .+...+++..+.+.|+-+.......+.+.+.
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl~ 299 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYN 299 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 45555666666666666666666431111 12233334444443322 3445566666666655544444444433333
No 282
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=57.99 E-value=36 Score=25.01 Aligned_cols=63 Identities=8% Similarity=0.137 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCC
Q 039177 209 YTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQED--YVKAEELFDELLVLGL 272 (453)
Q Consensus 209 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~m~~~g~ 272 (453)
.+.++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+.+..++..+...|+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 345667777777777777777776421111 12233334444444322 2445556666655543
No 283
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=57.76 E-value=61 Score=28.13 Aligned_cols=278 Identities=11% Similarity=-0.007 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCccChHhHH---HHHHHHHhcCCCChHHHHHHHHH
Q 039177 120 IDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCVDGKTCS---LILSSVCEQRDLSSDELLGFVQE 196 (453)
Q Consensus 120 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~---~ll~~~~~~~~~~~~~a~~~~~~ 196 (453)
++.+...++.|+++-+..+++. |..+|...-. +-|...+..|+. ++.+.
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~----------------------Gadvn~~~~~~g~TpLh~A~~~g~~------~iv~~ 77 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEG----------------------GANVNFQEEEGGWTPLHNAVQMSRE------DIVEL 77 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH----------------------TCCTTCCCTTTCCCHHHHHHHTTCH------HHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHC----------------------CCCCCccCCCCCcCHHHHHHHcCCH------HHHHH
Q ss_pred HHHcCCCcChhh--HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 039177 197 MKKLGFCFGMVD--YTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVP 274 (453)
Q Consensus 197 ~~~~g~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~ 274 (453)
+.+.|-.++... ....+......+.......+...-...... |..-++.+..+..... .++++.+.+.|..+
T Consensus 78 Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~g~t~l~~A~~~~~-----~~~~~~ll~~ga~~ 151 (337)
T 4g8k_A 78 LLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNEC-DFYGFTAFMEAAVYGK-----VKALKFLYKRGANV 151 (337)
T ss_dssp HHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCB-CTTCCBHHHHHHHTTC-----HHHHHHHHHTTCCT
T ss_pred HHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhh-ccCCCCHHHHHHHcCc-----HHHHHHHHHcCCCc
Q ss_pred ChhhHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 039177 275 DVYTYN------------VYINGLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGI 342 (453)
Q Consensus 275 ~~~~~~------------~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 342 (453)
+..... +.+...+..|+.+-+..++++.-..--..|..-.+.+..++..... .....+.+.+.+.|.
T Consensus 152 ~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~-~~~~~i~~lLl~~ga 230 (337)
T 4g8k_A 152 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD-SDVEAITHLLLDHGA 230 (337)
T ss_dssp TCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCT-TTHHHHHHHHHHTTC
T ss_pred chhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCc-ccHHHHHHHHHHCCC
Q ss_pred CcCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 039177 343 VLNLQTYS--IMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQMADKDVSPGARVWE 420 (453)
Q Consensus 343 ~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 420 (453)
.++..... ..+...+..|..+.+..+++.-...--..+..-.+.|..+..... .++.+.+++.|..||..+
T Consensus 231 d~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~-----~~iv~~Ll~~GAd~n~~~-- 303 (337)
T 4g8k_A 231 DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL-----KKIAELLCKRGASTDCGD-- 303 (337)
T ss_dssp CTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTC-----HHHHHHHHTTSCSSTTCC--
T ss_pred CCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCC-----HHHHHHHHHCCCCCCCCC--
Q ss_pred HHHhchhcchhhHHHHHHH
Q 039177 421 ALLLSSVSKLDFVNTSFIR 439 (453)
Q Consensus 421 ~ll~a~~~~~~~~~~~~~~ 439 (453)
.|..|+.....+..+.+.+
T Consensus 304 ~L~~A~~~~~~~iv~~Ll~ 322 (337)
T 4g8k_A 304 LVMTARRNYDHSLVKVLLS 322 (337)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
No 284
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=57.74 E-value=99 Score=27.14 Aligned_cols=129 Identities=16% Similarity=0.036 Sum_probs=71.2
Q ss_pred HHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHc----C--CCcChhhHHHHHHHHHhcCChhHHHHH
Q 039177 155 EILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKL----G--FCFGMVDYTNVIRSLVKKEKVFDALGI 228 (453)
Q Consensus 155 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~----g--~~~~~~~~~~li~~~~~~g~~~~a~~~ 228 (453)
-+.+.+.+.++++|......++..+......+. .-.++.+.+.+. | -.-|......+...|.+.+++.+|..-
T Consensus 80 llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p-~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H 158 (336)
T 3lpz_A 80 LLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEP-VRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKH 158 (336)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCH-HHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 334555567788888887788877776665432 233344444332 2 123556677778888888888888776
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039177 229 LNQMKSDGIKPDIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACME 303 (453)
Q Consensus 229 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 303 (453)
|- . |-.+....|..++--+...+...+ .|...-.+++ -|.-.+++..|..+++...
T Consensus 159 ~i--l--g~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 159 LV--L--GTKESPEVLARMEYEWYKQDESHT--------------APLYCARAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HT--T--SCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred HH--h--cCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence 62 2 223233555555544443332111 2222222333 4566667777777665544
No 285
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=56.79 E-value=27 Score=26.53 Aligned_cols=50 Identities=16% Similarity=0.246 Sum_probs=24.9
Q ss_pred HHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 039177 330 LRELVKEMKWKGIVL-NLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCT 379 (453)
Q Consensus 330 a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 379 (453)
...+|..|..+|+.- -...|......+...|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 455555555554322 22344444455555555555555555555554444
No 286
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=55.93 E-value=65 Score=24.48 Aligned_cols=50 Identities=10% Similarity=-0.063 Sum_probs=23.3
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 039177 295 GIKMIACMEELGSKPD-VITYNTLLQALCKVRELNRLRELVKEMKWKGIVL 344 (453)
Q Consensus 295 a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 344 (453)
+.++|..|...|+-.. ...|......+...|++.+|..+|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4445555554444332 2234444444445555555555555555544444
No 287
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=55.00 E-value=64 Score=26.66 Aligned_cols=89 Identities=10% Similarity=0.076 Sum_probs=46.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 039177 212 VIRSLVKKEKVFDALGILNQMKSD--GIKP----DIVCYTMVLNGVIVQEDYVKAEELFDELLVLGLVPDVYTYNVYING 285 (453)
Q Consensus 212 li~~~~~~g~~~~a~~~~~~m~~~--~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 285 (453)
-++.+....++++|.+++++..+. +.+. +.......+..-.....-.-+..+.+++ .. ..+.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 356777777788887777766542 1221 1112222333333333333344444444 22 3445555666677
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 039177 286 LCKQNNVEAGIKMIACME 303 (453)
Q Consensus 286 ~~~~~~~~~a~~~~~~m~ 303 (453)
..+.|+.++|.++|=+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 777777777777765543
No 288
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=54.90 E-value=38 Score=27.35 Aligned_cols=19 Identities=16% Similarity=0.008 Sum_probs=9.9
Q ss_pred HHHHHhcCChhHHHHHHHH
Q 039177 213 IRSLVKKEKVFDALGILNQ 231 (453)
Q Consensus 213 i~~~~~~g~~~~a~~~~~~ 231 (453)
+...++.|+++....++..
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3444555555555555543
No 289
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=54.06 E-value=70 Score=24.28 Aligned_cols=24 Identities=4% Similarity=0.174 Sum_probs=12.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 039177 280 NVYINGLCKQNNVEAGIKMIACME 303 (453)
Q Consensus 280 ~~li~~~~~~~~~~~a~~~~~~m~ 303 (453)
+.++.-|...|+.++|.+.++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 344555555555555555555543
No 290
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=54.05 E-value=67 Score=26.55 Aligned_cols=90 Identities=10% Similarity=0.037 Sum_probs=49.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 039177 282 YINGLCKQNNVEAGIKMIACMEEL--GSKP----DVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDG 355 (453)
Q Consensus 282 li~~~~~~~~~~~a~~~~~~m~~~--~~~p----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 355 (453)
-++.+....++++|.+++++..+. +.++ +.......+..-.....-.-+..+.+++ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 567777888888888888776542 1221 1112222233333333333344444444 22 3355556666677
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 039177 356 LASKGDIIEACGLLEEALN 374 (453)
Q Consensus 356 ~~~~g~~~~A~~~~~~m~~ 374 (453)
+.+.|+.++|.++|-+...
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 7777888888777766644
No 291
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=53.56 E-value=82 Score=24.94 Aligned_cols=17 Identities=12% Similarity=-0.205 Sum_probs=7.8
Q ss_pred CHHHHHHHHHHHHhcCC
Q 039177 240 DIVCYTMVLNGVIVQED 256 (453)
Q Consensus 240 ~~~~~~~ll~~~~~~g~ 256 (453)
+...-...+.++.+.++
T Consensus 94 ~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGD 110 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 44444444444444444
No 292
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=52.08 E-value=67 Score=23.52 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=10.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 039177 316 TLLQALCKVRELNRLRELVKEM 337 (453)
Q Consensus 316 ~li~~~~~~~~~~~a~~~~~~~ 337 (453)
.++.-|...|+.++|.+.++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444444444444444444444
No 293
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=51.92 E-value=27 Score=29.78 Aligned_cols=182 Identities=9% Similarity=-0.004 Sum_probs=81.7
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHh
Q 039177 177 SSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDI---VCYTMVLNGVIV 253 (453)
Q Consensus 177 ~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~ 253 (453)
...+..|+. +.+ +.+.+.|..++...-.+.+...+..|+.+-+.. +.+.|..++. .-++.| ...+.
T Consensus 36 ~~A~~~g~~--~~v----~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~----Ll~~ga~~~~~d~~g~t~L-~~A~~ 104 (285)
T 3kea_A 36 YYAIADNNV--RLV----CTLLNAGALKNLLENEFPLHQAATLEDTKIVKI----LLFSGLDDSQFDDKGNTAL-YYAVD 104 (285)
T ss_dssp HHHHHTTCH--HHH----HHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHH----HHHTTCCTTCCCTTSCCHH-HHHHH
T ss_pred HHHHHcCCH--HHH----HHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHH----HHHCCCCCCCcCCCCCcHH-HHHHH
Confidence 334455665 333 334455544443322344555566677654433 3444544332 222333 34445
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 039177 254 QEDYVKAEELFDELLVLGLVPDVY---TYNVYINGLCKQNNVEAGIKMIACMEELGSKP-DVITYNTLLQALCKVRELNR 329 (453)
Q Consensus 254 ~g~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~ 329 (453)
.|+.+-+..++ +.|..++.. .+.+.+...+..|+.+-+ +.+.+.|..+ +...-.+.+...+..|+.+-
T Consensus 105 ~g~~~~v~~Ll----~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~ 176 (285)
T 3kea_A 105 SGNMQTVKLFV----KKNWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVDM 176 (285)
T ss_dssp TTCHHHHHHHH----HHCGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHH----hcCCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHHH
Confidence 67665444443 334433322 223444555666766544 4444444332 11122333445556777776
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 039177 330 LRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSS 382 (453)
Q Consensus 330 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 382 (453)
+..+++.-...... +..-++..+...+..|+.+ +.+.+.+.|..++..
T Consensus 177 v~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~~----~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 177 MILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDIE----MLQALFKYDINIYSA 224 (285)
T ss_dssp HHHHHHHHHHTCTT-CCCBCCTTHHHHHHHTCHH----HHHHHTTSCBCSTTT
T ss_pred HHHHHHcCCCCCcc-cCCCCChHHHHHHHcCCHH----HHHHHHHcCCCCCCC
Confidence 66665543332211 1111122222334455543 334444556655544
No 294
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=49.77 E-value=59 Score=26.28 Aligned_cols=84 Identities=13% Similarity=0.093 Sum_probs=41.4
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHcCCCcChhh--HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH---HHHHHHHH
Q 039177 176 LSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVD--YTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIV---CYTMVLNG 250 (453)
Q Consensus 176 l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~ 250 (453)
|...+..|+. +.+..+++.+.+.|..++... ..+.+...+..|+.+ +++.+.+.|..++.. -++ .+..
T Consensus 13 L~~A~~~g~~--~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t-~l~~ 85 (241)
T 1k1a_A 13 LHIAVVQGNL--PAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQT-AAHL 85 (241)
T ss_dssp HHHHHHTTCH--HHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCC-HHHH
T ss_pred HHHHHHcCCH--HHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCC-HHHH
Confidence 3444566776 666666666666664443321 123444555666654 344444455444321 122 3334
Q ss_pred HHhcCCHHHHHHHHHH
Q 039177 251 VIVQEDYVKAEELFDE 266 (453)
Q Consensus 251 ~~~~g~~~~a~~~~~~ 266 (453)
.+..|+.+-+..+++.
T Consensus 86 A~~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 86 ACEHRSPTCLRALLDS 101 (241)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHc
Confidence 4456666555444443
No 295
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=49.35 E-value=32 Score=26.16 Aligned_cols=63 Identities=8% Similarity=0.137 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCC
Q 039177 209 YTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQED--YVKAEELFDELLVLGL 272 (453)
Q Consensus 209 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~m~~~g~ 272 (453)
.+.++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+.+..++..+...|+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 345667777777777777777776421111 12233333344443222 3345555555555443
No 296
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=48.25 E-value=13 Score=31.11 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=10.0
Q ss_pred HHhcCChhHHHHHHHHHHhCC
Q 039177 216 LVKKEKVFDALGILNQMKSDG 236 (453)
Q Consensus 216 ~~~~g~~~~a~~~~~~m~~~~ 236 (453)
.++.|+.+....+++.+.+.|
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~ 32 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHK 32 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHhcC
Confidence 344455555555555444433
No 297
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=47.00 E-value=36 Score=27.54 Aligned_cols=11 Identities=0% Similarity=-0.001 Sum_probs=4.8
Q ss_pred HHHHHhcCChh
Q 039177 213 IRSLVKKEKVF 223 (453)
Q Consensus 213 i~~~~~~g~~~ 223 (453)
+...+..|+.+
T Consensus 46 L~~A~~~~~~~ 56 (240)
T 3eu9_A 46 LHWAAINNRID 56 (240)
T ss_dssp HHHHHHTTCHH
T ss_pred HHHHHHhCCHH
Confidence 33444445443
No 298
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=45.19 E-value=95 Score=23.34 Aligned_cols=60 Identities=13% Similarity=0.068 Sum_probs=29.2
Q ss_pred HHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCH
Q 039177 337 MKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLV 397 (453)
Q Consensus 337 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 397 (453)
+.+.|.+++. --..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 18 l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 18 IKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 4445555322 23334444444445555666666665555444555544445555555543
No 299
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=44.84 E-value=1.5e+02 Score=25.61 Aligned_cols=72 Identities=19% Similarity=0.213 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCC--HHHHHHHHHHHhhCCCCCCHHHHH
Q 039177 348 TYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGL--VRKALELLKQMADKDVSPGARVWE 420 (453)
Q Consensus 348 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~ 420 (453)
....++.=|...|+.++|.+.++++....+. ...++..+..++-+.++ .+....++..+.+.|+-+......
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~ 241 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKR 241 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 3467888898999999999999988422111 12233444445544433 455667787777666655444433
No 300
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.79 E-value=50 Score=31.03 Aligned_cols=65 Identities=14% Similarity=0.135 Sum_probs=44.3
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCH--HHHH-HHHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 206 MVDYTNVIRSLVKKEKVFDALGILNQMKSDGI-KPDI--VCYT-MVLNGVIVQEDYVKAEELFDELLVL 270 (453)
Q Consensus 206 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~--~~~~-~ll~~~~~~g~~~~a~~~~~~m~~~ 270 (453)
...+|.+++.|...+.++.|..+..+..--.. .++. .+|. -+...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45688999999999999999999988752100 1111 2222 2345566778999998888887654
No 301
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=44.33 E-value=1.1e+02 Score=23.62 Aligned_cols=50 Identities=8% Similarity=0.064 Sum_probs=23.3
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 039177 295 GIKMIACMEELGSKPDV-ITYNTLLQALCKVRELNRLRELVKEMKWKGIVL 344 (453)
Q Consensus 295 a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 344 (453)
..++|..|...|+-... ..|......+-..|++.+|..+|..-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 34445555544443322 234444444444555555555555555554444
No 302
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=43.56 E-value=1.4e+02 Score=26.61 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHH
Q 039177 172 CSLILSSVCEQRDLSSDELLGFVQEM 197 (453)
Q Consensus 172 ~~~ll~~~~~~~~~~~~~a~~~~~~~ 197 (453)
...+|.-|...++. ++|...++++
T Consensus 15 ~~~ii~EY~~~~D~--~Ea~~~l~eL 38 (364)
T 3l6a_A 15 TETVVTEYLNSGNA--NEAVNGVREM 38 (364)
T ss_dssp HHHHHHHHHHHCCH--HHHHHHHHHH
T ss_pred HHHHHHHHHhCCCH--HHHHHHHHHh
Confidence 44555555555555 5555555444
No 303
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=43.39 E-value=1.2e+02 Score=23.73 Aligned_cols=114 Identities=11% Similarity=0.073 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039177 291 NVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLE 370 (453)
Q Consensus 291 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 370 (453)
..+.+..++..+.+.|+--|...-...+....+.|.+.. ..+-.++..+|+..+ +....+..+......+.|..+++
T Consensus 48 ~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G~-~~I~~eL~~KGI~~~--~I~~al~~~~~~de~e~a~~l~~ 124 (177)
T 3e3v_A 48 HEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKGP-KVIKLNLSKKGIDDN--IAEDALILYTDKLQVEKGVTLAE 124 (177)
T ss_dssp CHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCCH-HHHHHHHHTTTCCHH--HHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccccH-HHHHHHHHHcCCCHH--HHHHHHHhCCchhHHHHHHHHHH
Confidence 455667777888888876555555666666665544332 556667777777532 22222222111112344555555
Q ss_pred HHHHC-CCCCChhhHHHHHHHHHhCCC-HHHHHHHHHHH
Q 039177 371 EALNK-GLCTQSSMFDETICGLCQRGL-VRKALELLKQM 407 (453)
Q Consensus 371 ~m~~~-~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m 407 (453)
+-... .-.++.....-++..+.+.|- ++.+..+++.+
T Consensus 125 Kk~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l 163 (177)
T 3e3v_A 125 KLANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQEL 163 (177)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHhhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHC
Confidence 43222 111222334455666666663 55555555555
No 304
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=43.37 E-value=81 Score=24.64 Aligned_cols=29 Identities=7% Similarity=0.094 Sum_probs=14.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 039177 212 VIRSLVKKEKVFDALGILNQMKSDGIKPD 240 (453)
Q Consensus 212 li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 240 (453)
.+...+..|+.+.-.++.+.+.+.|..++
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 34444455555544555555555555443
No 305
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=42.78 E-value=44 Score=27.26 Aligned_cols=51 Identities=14% Similarity=0.018 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 039177 329 RLRELVKEMKWKGIVL-NLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCT 379 (453)
Q Consensus 329 ~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 379 (453)
....+|..|..+|+.- -...|......+...|++.+|..+|+.-++.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3444455444443322 22234444444444455555555554444444443
No 306
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=42.51 E-value=1.3e+02 Score=24.25 Aligned_cols=49 Identities=10% Similarity=0.074 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHCCCCcCHH--HH-----HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039177 327 LNRLRELVKEMKWKGIVLNLQ--TY-----SIMIDGLASKGDIIEACGLLEEALNK 375 (453)
Q Consensus 327 ~~~a~~~~~~~~~~~~~p~~~--~~-----~~li~~~~~~g~~~~A~~~~~~m~~~ 375 (453)
++.|+.+|+.+.+....++.. .. -..+..|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 456777777666653221111 11 12334566677777777777666543
No 307
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=42.10 E-value=2.5e+02 Score=27.18 Aligned_cols=150 Identities=11% Similarity=-0.020 Sum_probs=77.6
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHH----HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 039177 256 DYVKAEELFDELLVLGLVPDVYTYNVYIN----GLCKQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLR 331 (453)
Q Consensus 256 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~----~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 331 (453)
+.+.|...+....+... .+......+-. .....+...++...+....... .+.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 66777777777654331 22222222222 2223342344445555444322 34433444444455667788777
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------------CCCC-------C---hh-----hH
Q 039177 332 ELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNK------------GLCT-------Q---SS-----MF 384 (453)
Q Consensus 332 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------~~~~-------~---~~-----~~ 384 (453)
..|..|...... .....-=+.+++...|+.++|..+|+.+.+. |..+ + .. .-
T Consensus 306 ~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~ 384 (618)
T 1qsa_A 306 TWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPE 384 (618)
T ss_dssp HHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHH
T ss_pred HHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChH
Confidence 777776553221 2222222344566677777777777765431 2110 0 00 01
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhh
Q 039177 385 DETICGLCQRGLVRKALELLKQMAD 409 (453)
Q Consensus 385 ~~li~~~~~~g~~~~A~~~~~~m~~ 409 (453)
..-+..+...|....|...+..+..
T Consensus 385 ~~r~~~L~~~g~~~~a~~ew~~~~~ 409 (618)
T 1qsa_A 385 MARVRELMYWNLDNTARSEWANLVK 409 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCChhhHHHHHHHHHh
Confidence 1224567788888888888887764
No 308
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=41.50 E-value=72 Score=20.80 Aligned_cols=64 Identities=8% Similarity=0.042 Sum_probs=45.1
Q ss_pred HHHhhhcCCCCChhhHHHHHHHHHhcC-CcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChh
Q 039177 68 LHSFSIYNCEPPPEAYHFVIKTLAENS-QFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQ 133 (453)
Q Consensus 68 l~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 133 (453)
...+...|+..++.- ..++..+...+ ..-.+.++++.+.+. +...+..+....++.+.+.|-+.
T Consensus 5 ~~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~-~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 5 NTALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDM-GEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp HHHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCCeE
Confidence 345667788887655 45666666665 677889999999776 44556677777888888887653
No 309
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=40.31 E-value=1.8e+02 Score=25.10 Aligned_cols=70 Identities=19% Similarity=0.209 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCChhh
Q 039177 313 TYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGD--IIEACGLLEEALNKGLCTQSSM 383 (453)
Q Consensus 313 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~~~~~~ 383 (453)
....++.-|...|+.++|.+.++++...... ...+..++..+.-+.++ .+...+++..+.+.|+.+....
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 4578889999999999999999998643222 34455666666665443 4567888888887776655444
No 310
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=39.20 E-value=73 Score=25.98 Aligned_cols=51 Identities=8% Similarity=0.055 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 039177 294 AGIKMIACMEELGSKPD-VITYNTLLQALCKVRELNRLRELVKEMKWKGIVL 344 (453)
Q Consensus 294 ~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 344 (453)
...++|..|...|+... ...|......+...|++.+|..+|+.-++.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 45566666666665433 2355556666666666666666666666665555
No 311
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=38.11 E-value=19 Score=29.97 Aligned_cols=52 Identities=12% Similarity=0.024 Sum_probs=27.4
Q ss_pred HHhcCCCChHHHHHHHHHHHHcCCCcChh-------hHHHHHHHHH--hcCChhHHHHHHHHH
Q 039177 179 VCEQRDLSSDELLGFVQEMKKLGFCFGMV-------DYTNVIRSLV--KKEKVFDALGILNQM 232 (453)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-------~~~~li~~~~--~~g~~~~a~~~~~~m 232 (453)
.++.|+. +....+++.+.+.|..++.. -++.|..+.. +.|+.+-+..+++.-
T Consensus 12 A~~~g~~--~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 12 IVSRGSP--DGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHTCG--GGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHhCCH--HHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 4556666 56666666666665444422 2334433332 456666666666554
No 312
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=37.70 E-value=60 Score=25.34 Aligned_cols=6 Identities=33% Similarity=0.368 Sum_probs=2.4
Q ss_pred hcCCHH
Q 039177 288 KQNNVE 293 (453)
Q Consensus 288 ~~~~~~ 293 (453)
..|+.+
T Consensus 81 ~~~~~~ 86 (201)
T 3hra_A 81 AQGRTE 86 (201)
T ss_dssp HTTCHH
T ss_pred HcCCHH
Confidence 334443
No 313
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=37.49 E-value=94 Score=23.17 Aligned_cols=59 Identities=14% Similarity=0.067 Sum_probs=25.8
Q ss_pred HHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCC
Q 039177 337 MKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGL 396 (453)
Q Consensus 337 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 396 (453)
+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 34445443332 222333333344444555555555544434444444444444444443
No 314
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=37.29 E-value=48 Score=25.93 Aligned_cols=154 Identities=14% Similarity=0.051 Sum_probs=65.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCH
Q 039177 251 VIVQEDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSKPDVI---TYNTLLQALCKVREL 327 (453)
Q Consensus 251 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~~~~ 327 (453)
.+..|+.+.+..++..-...--..|..-++.+ ...+..|+.+- ++.+.+.|..++.. ..+. +...+..|+.
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~ 85 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTPL-NIAVHNNDIEI----AKALIDRGADINLQNSISDSP-YLYAGAQGRT 85 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHH-HHHHHHTCHHH----HHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCH
T ss_pred HHHhccHHHHHHHHHcCCCCCCCCCCCCCCHH-HHHHHcCCHHH----HHHHHHcCCCCCCCCCCCCCH-HHHHHHcCCH
Confidence 34456666555554321100001122223333 33445566543 34444445444321 1222 3344566776
Q ss_pred HHHHHHHHHHHHCCCCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHCCCCCChhhHHHHHHHHHhCCC-HHHHHH
Q 039177 328 NRLRELVKEMKWKGIVL---NLQTYSIMIDGLASKGDIIEACGLLEEA-LNKGLCTQSSMFDETICGLCQRGL-VRKALE 402 (453)
Q Consensus 328 ~~a~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~ 402 (453)
+-+..+++. .+..+ +..-.+.| ...+..|+.+-+..+++.- ...+ ..+..-.+.|..+ +..|+ ...-.+
T Consensus 86 ~~~~~Ll~~---~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~~g~t~L~~A-~~~~~~~~~~~~ 159 (201)
T 3hra_A 86 EILAYMLKH---ATPDLNKHNRYGGNAL-IPAAEKGHIDNVKLLLEDGREDID-FQNDFGYTALIEA-VGLREGNQLYQD 159 (201)
T ss_dssp HHHHHHHHH---SCCCTTCCCTTSCCSH-HHHHHTTCHHHHHHHHHHCCCCTT-CCCTTSCCHHHHH-HHSSCCSHHHHH
T ss_pred HHHHHHHhc---cCcccccccCCCCcHH-HHHHHcCCHHHHHHHHHcCCCCcC-CCCCCCCCHHHHH-HHhccchhhHHH
Confidence 665555533 22111 11112223 3345567776665555432 1111 1122222333333 33444 333356
Q ss_pred HHHHHhhCCCCCCH
Q 039177 403 LLKQMADKDVSPGA 416 (453)
Q Consensus 403 ~~~~m~~~~~~p~~ 416 (453)
+++.+.+.|..|+.
T Consensus 160 ~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 160 IVKLLMENGADQSI 173 (201)
T ss_dssp HHHHHHHTTCCTTC
T ss_pred HHHHHHHCCCCCCc
Confidence 67777777776654
No 315
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=37.23 E-value=3.5e+02 Score=27.59 Aligned_cols=170 Identities=9% Similarity=-0.052 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 039177 280 NVYINGLCKQNN---VEAGIKMIACMEEL--GSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMID 354 (453)
Q Consensus 280 ~~li~~~~~~~~---~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 354 (453)
..++...|..|+ .+.|.+.|+..... +...+...-..+...-.+.|.-++-..+++...... +..--..++.
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ll~ 766 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKLRS 766 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHHHH
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHH---HhhCCCCCCHHHHHHHHhchhcchh
Q 039177 355 GLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQ---MADKDVSPGARVWEALLLSSVSKLD 431 (453)
Q Consensus 355 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---m~~~~~~p~~~~~~~ll~a~~~~~~ 431 (453)
+++...+.+...++++.....+..........+.......-..+.|.+++.+ .....+..+...+..+|.+..+...
T Consensus 767 aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~~~ 846 (909)
T 4fke_A 767 ALACSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFS 846 (909)
T ss_dssp HHTTCCCHHHHHHHHHHTTCTTTSCGGGHHHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTTCC
T ss_pred HhCCCCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcC
Q ss_pred hHHHHHHHHHHhhhcCCCCCCC
Q 039177 432 FVNTSFIRLVDQILNTPCKMEG 453 (453)
Q Consensus 432 ~~~~~~~~~~~~~~~~p~~~~~ 453 (453)
...+. .++.+=+..++....|
T Consensus 847 t~~~~-~~~~~f~~~~~~~~~~ 867 (909)
T 4fke_A 847 SEFEL-QQLEQFKKNNMDVGFG 867 (909)
T ss_dssp SHHHH-HHHHHHHTTCSSSCCG
T ss_pred CHHHH-HHHHHHHhhCCccccc
No 316
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=36.58 E-value=1.5e+02 Score=23.07 Aligned_cols=52 Identities=13% Similarity=0.185 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 039177 256 DYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIACMEELGSK 308 (453)
Q Consensus 256 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 308 (453)
..+.+..++..+.+.|...|...-..++....+.|.+ ....+-.++...|+.
T Consensus 48 ~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~ 99 (177)
T 3e3v_A 48 HEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGID 99 (177)
T ss_dssp CHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCC
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCC
Confidence 3455667777777777766665556666665544332 234555666777764
No 317
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=36.28 E-value=1.5e+02 Score=23.04 Aligned_cols=17 Identities=12% Similarity=-0.205 Sum_probs=7.7
Q ss_pred CHHHHHHHHHHHHhcCC
Q 039177 240 DIVCYTMVLNGVIVQED 256 (453)
Q Consensus 240 ~~~~~~~ll~~~~~~g~ 256 (453)
+...-...+.++.+.++
T Consensus 89 ~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 89 DGWVRQSAAVALGQIGD 105 (201)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 44444444444444444
No 318
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=35.88 E-value=39 Score=20.83 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 039177 258 VKAEELFDELLVLGLVPDVYTYNVYINGL 286 (453)
Q Consensus 258 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 286 (453)
++|++.|.+|++..-.++..+|...|..+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45666666665544345556666666655
No 319
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=35.28 E-value=1.8e+02 Score=29.95 Aligned_cols=88 Identities=13% Similarity=0.037 Sum_probs=59.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------------
Q 039177 317 LLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNKGLCT----------------- 379 (453)
Q Consensus 317 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----------------- 379 (453)
++..|...|..+-+.++...+ .-+...--.+..+|...|++++|...|++.. .|+..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~-----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC-----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccchhhhhhccCc
Confidence 556666777777655543222 2244444567788899999999999998753 22211
Q ss_pred ------ChhhHHHHHHHHHhCCCHHHHHHHHHHHhhC
Q 039177 380 ------QSSMFDETICGLCQRGLVRKALELLKQMADK 410 (453)
Q Consensus 380 ------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 410 (453)
...-|..++..|.+.|.++.+.++-+..++.
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1125788888888888888888888877753
No 320
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=34.26 E-value=1.8e+02 Score=23.19 Aligned_cols=18 Identities=17% Similarity=0.097 Sum_probs=9.3
Q ss_pred HHHHHhcCChhHHHHHHh
Q 039177 123 IKTYADAHRFQDSVNLFY 140 (453)
Q Consensus 123 i~~~~~~g~~~~A~~~~~ 140 (453)
+...++.|+.+.+..+++
T Consensus 7 L~~A~~~g~~~~v~~Ll~ 24 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLK 24 (232)
T ss_dssp HHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 344455666655555443
No 321
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=34.06 E-value=1.4e+02 Score=22.13 Aligned_cols=69 Identities=7% Similarity=0.139 Sum_probs=49.1
Q ss_pred HHHHHHHhhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhH
Q 039177 64 LSSLLHSFSIYNCEPPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQD 134 (453)
Q Consensus 64 ~~~ll~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 134 (453)
...+...++..|.++++.-. .++..+...+..-.|.++++.+.+. +...+..+.-.-++.+.+.|-+..
T Consensus 6 ~~~~~~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~~ 74 (145)
T 2fe3_A 6 LKEALETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLVKE 74 (145)
T ss_dssp HHHHHHHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCEEE
Confidence 34455667788888887653 3555666677788899999999877 445566676677788888886543
No 322
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=33.97 E-value=1.8e+02 Score=23.22 Aligned_cols=33 Identities=15% Similarity=0.090 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 039177 255 EDYVKAEELFDELLVLGLVPDVYTYNVYINGLCK 288 (453)
Q Consensus 255 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 288 (453)
.+.+.|+-++.+|++.| .|.-..-..++.+.-.
T Consensus 28 SDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsED 60 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG-DLASICRRLMVIGYED 60 (204)
T ss_dssp TCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhh
Confidence 55555555555555555 4433333333333333
No 323
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=33.75 E-value=1.7e+02 Score=23.32 Aligned_cols=23 Identities=4% Similarity=-0.249 Sum_probs=12.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC
Q 039177 320 ALCKVRELNRLRELVKEMKWKGI 342 (453)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~ 342 (453)
..+..|+.+-+..+++.+.+.|.
T Consensus 160 ~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 160 ILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCChHHHHHHHHHHHhcCC
Confidence 33455555555555555555543
No 324
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=33.29 E-value=99 Score=22.71 Aligned_cols=35 Identities=9% Similarity=0.065 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCC
Q 039177 361 DIIEACGLLEEALNKGLCTQSSMFDETICGLCQRG 395 (453)
Q Consensus 361 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 395 (453)
..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555544443334444333334444433
No 325
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=33.00 E-value=38 Score=27.48 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=7.5
Q ss_pred hCCCHHHHHHHHHHHh
Q 039177 393 QRGLVRKALELLKQMA 408 (453)
Q Consensus 393 ~~g~~~~A~~~~~~m~ 408 (453)
..|+.+.+.++.+.+.
T Consensus 219 ~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 219 LNSQVWSALQMSKALQ 234 (237)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3444445555444443
No 326
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=32.99 E-value=1.3e+02 Score=22.54 Aligned_cols=65 Identities=8% Similarity=0.036 Sum_probs=46.5
Q ss_pred HHHhhhcCCCCChhhHHHHHHHHHhcC-CcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhH
Q 039177 68 LHSFSIYNCEPPPEAYHFVIKTLAENS-QFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQD 134 (453)
Q Consensus 68 l~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 134 (453)
...++..|+++++.-. .++..+...+ ..-.|.++++.+.+. +...+..+.-.-++.+.+.|-+..
T Consensus 5 ~~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~~ 70 (150)
T 2w57_A 5 NQALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDL-GEEIGLATVYRVLNQFDDAGIVTR 70 (150)
T ss_dssp HHHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHCCcEEE
Confidence 4456778888887653 3455666666 788899999999887 445566677777788888887543
No 327
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=31.73 E-value=1.1e+02 Score=23.40 Aligned_cols=57 Identities=14% Similarity=0.092 Sum_probs=28.5
Q ss_pred CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhCCCH
Q 039177 340 KGIVLNLQTYSIMIDGLASKGDIIEACGLLEEALNK--GLCTQSSMFDETICGLCQRGLV 397 (453)
Q Consensus 340 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~ 397 (453)
.|.+++. --..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-+
T Consensus 27 ~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 27 GGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred cCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 3555433 2233444455555555566666666554 4444444544445555555543
No 328
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=31.11 E-value=1.6e+02 Score=21.85 Aligned_cols=65 Identities=6% Similarity=0.067 Sum_probs=45.5
Q ss_pred HHHHhhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhH
Q 039177 67 LLHSFSIYNCEPPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQD 134 (453)
Q Consensus 67 ll~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 134 (453)
+.+.++..|+++++.- ..++..+...+ .-.|.++++.+.+. +...+..+.-.-++.+.+.|-+.+
T Consensus 6 ~~~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~-~~~is~~TVYR~L~~L~e~Glv~~ 70 (145)
T 3eyy_A 6 WKSDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKT-ASGINISTVYRTLELLEELGLVSH 70 (145)
T ss_dssp HHHHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTT-CTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhh-CCCCCHhHHHHHHHHHHHCCcEEE
Confidence 3445677888888764 33455566666 78899999999876 445566676677788888886543
No 329
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=31.06 E-value=70 Score=28.17 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHH
Q 039177 172 CSLILSSVCEQRDLSSDELLGFVQEM 197 (453)
Q Consensus 172 ~~~ll~~~~~~~~~~~~~a~~~~~~~ 197 (453)
...++.-|...|+. ++|...++++
T Consensus 14 ~~~ll~Ey~~~~d~--~Ea~~ci~el 37 (339)
T 1ug3_A 14 SKAIIEEYLHLNDM--KEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHHHCCH--HHHHHHHHTT
T ss_pred HHHHHHHHHhCCCH--HHHHHHHHHc
Confidence 56677777777777 7777665554
No 330
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=30.85 E-value=1.7e+02 Score=21.93 Aligned_cols=62 Identities=11% Similarity=0.109 Sum_probs=39.1
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH
Q 039177 300 ACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGDI 362 (453)
Q Consensus 300 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 362 (453)
+.+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|.--.+..+...|-+
T Consensus 16 ~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 4456677664432 3345555556666777888888888777666777766666777766644
No 331
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=30.83 E-value=1.6e+02 Score=23.36 Aligned_cols=87 Identities=13% Similarity=0.031 Sum_probs=37.1
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHH
Q 039177 176 LSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDI---VCYTMVLNGVI 252 (453)
Q Consensus 176 l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~ 252 (453)
+...+..|+. +....++..-...-...+...+ +.+...+..|+.+-+ +.+.+.|..++. .-++.+ ...+
T Consensus 10 l~~A~~~g~~--~~v~~ll~~~~~~~~~~~~~g~-t~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t~L-~~A~ 81 (231)
T 3aji_A 10 ICNLAYSGKL--DELKERILADKSLATRTDQDSR-TALHWACSAGHTEIV----EFLLQLGVPVNDKDDAGWSPL-HIAA 81 (231)
T ss_dssp HHHHHHHTCH--HHHHHHHHHCGGGGGCCCTTSC-CHHHHHHHHTCHHHH----HHHHHTTCCSCCCCTTSCCHH-HHHH
T ss_pred HHHHHHhCCH--HHHHHHHHhchhhhhcCCCCCC-CHHHHHHHcCcHHHH----HHHHHhCCCCCCcCCCCCCHH-HHHH
Confidence 4445666776 6555555432211011122222 234444556665443 334444443332 222333 3334
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC
Q 039177 253 VQEDYVKAEELFDELLVLGLVP 274 (453)
Q Consensus 253 ~~g~~~~a~~~~~~m~~~g~~~ 274 (453)
..|+.+ +++.+.+.|..+
T Consensus 82 ~~~~~~----~v~~Ll~~g~~~ 99 (231)
T 3aji_A 82 SAGXDE----IVKALLVKGAHV 99 (231)
T ss_dssp HHTCHH----HHHHHHHTTCCT
T ss_pred HcCHHH----HHHHHHHcCCCC
Confidence 456554 334444555443
No 332
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=30.45 E-value=94 Score=22.65 Aligned_cols=44 Identities=9% Similarity=0.105 Sum_probs=23.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 039177 212 VIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQE 255 (453)
Q Consensus 212 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 255 (453)
++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34444444455566666666666555555555555555555444
No 333
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=30.27 E-value=2.1e+02 Score=22.81 Aligned_cols=32 Identities=13% Similarity=-0.018 Sum_probs=16.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 039177 254 QEDYVKAEELFDELLVLGLVPDVYTYNVYING 285 (453)
Q Consensus 254 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 285 (453)
..+.+.|+-.+.+|++.|-.|.-..-..++.+
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~A 51 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIA 51 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 35666666666666666544433333333333
No 334
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=30.12 E-value=68 Score=28.20 Aligned_cols=221 Identities=12% Similarity=0.010 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHHCCCccChH--hHHHHHHHHHhcCCCChHHHHHHHHHH
Q 039177 120 IDLIKTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMINDGFCVDGK--TCSLILSSVCEQRDLSSDELLGFVQEM 197 (453)
Q Consensus 120 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~~~a~~~~~~~ 197 (453)
.+.+...+..|+.+-+..+++. |..++.. .-.+.|...+..|+. ++.+.+
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll~~----------------------g~~~~~~d~~g~t~L~~A~~~g~~------~~v~~L 72 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLIET----------------------GVSPTIQNRFGCTALHLACKFGCV------DTAKYL 72 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT----------------------TCCTTCCCTTCCCHHHHHHHHCCH------HHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHc----------------------CCCccccCCCCCcHHHHHHHcCCH------HHHHHH
Q ss_pred HHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH--------------------HHHHHHHHHHHhcCCH
Q 039177 198 KKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDI--------------------VCYTMVLNGVIVQEDY 257 (453)
Q Consensus 198 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--------------------~~~~~ll~~~~~~g~~ 257 (453)
.+.|..++.....+.+...+..|+.+-+..+++.....|..++. .-++.|..++......
T Consensus 73 l~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~ 152 (364)
T 3ljn_A 73 ASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEY 152 (364)
T ss_dssp HHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGG
T ss_pred HHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCch
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH---HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 039177 258 VKAEELFDELLVLGLVPDVYTYNVYINGLCKQNNVEAGIKMIAC---MEELGSKPDVITYNTLLQALCKVRELNRLRELV 334 (453)
Q Consensus 258 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~---m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 334 (453)
.+..+++-+. ...+......-.+.+...+..|+.+-+..+++. .....+......-.+.+...+..|+.+-+..++
T Consensus 153 ~~~v~~Ll~~-ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 231 (364)
T 3ljn_A 153 LEMIKILVQL-GASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFV 231 (364)
T ss_dssp HHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHH
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 039177 335 KEMKWKGIVLNLQTYSIMIDGLASKGDIIEACGLLEE 371 (453)
Q Consensus 335 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 371 (453)
+.-...+.. |..-.+.|..+ +..|+.+-+.-+++.
T Consensus 232 ~~gad~~~~-d~~g~tpL~~A-~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 232 EMGIDVNME-DNEHTVPLYLS-VRAAMVLLTKELLQK 266 (364)
T ss_dssp TTTCCTTCC-CTTSCCHHHHH-HHTCCHHHHHHHHHH
T ss_pred HcCCCCCCC-CCCCCCHHHHH-HHhChHHHHHHHHHc
No 335
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=29.86 E-value=1.6e+02 Score=21.49 Aligned_cols=58 Identities=14% Similarity=0.197 Sum_probs=27.7
Q ss_pred HHHcCCCcChhhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 039177 197 MKKLGFCFGMVDYTNVIRSLVKKE-KVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQE 255 (453)
Q Consensus 197 ~~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 255 (453)
+.+.|+..+.. -..++..+...+ ..-.|.++++.+.+.+...+..|..--+..+...|
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34445443322 223344444444 45556666666666555555555444455555444
No 336
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=29.70 E-value=1.5e+02 Score=22.66 Aligned_cols=59 Identities=12% Similarity=0.193 Sum_probs=30.7
Q ss_pred HHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCC
Q 039177 197 MKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSD--GIKPDIVCYTMVLNGVIVQED 256 (453)
Q Consensus 197 ~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~g~ 256 (453)
+.+.|+..+. --..++..+...+..-.|.++++.+.+. +...+..|..--+..+...|-
T Consensus 24 L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 24 LRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 3344554432 2334455555555566666666666655 444455554445555555553
No 337
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=29.69 E-value=2.7e+02 Score=24.01 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhc
Q 039177 172 CSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKK 219 (453)
Q Consensus 172 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 219 (453)
...++.++ ..++. +.+..++..+...|..|.. .+..++......
T Consensus 268 ~~~l~~~~-~~~~~--~~a~~~l~~l~~~g~~~~~-i~~~l~~~~~~~ 311 (353)
T 1sxj_D 268 LIEIVEKV-KSGDF--DEIKKYVNTFMKSGWSAAS-VVNQLHEYYITN 311 (353)
T ss_dssp HHHHHHHH-HSCCH--HHHHHHHHHHHHTSCCCTT-HHHHHHHHHHHC
T ss_pred HHHHHHHH-hcCCH--HHHHHHHHHHHHhCCCHHH-HHHHHHHHHHHh
Confidence 34445544 34455 7788888888888866643 344555555544
No 338
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=29.60 E-value=1.2e+02 Score=22.88 Aligned_cols=35 Identities=14% Similarity=0.121 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCC
Q 039177 362 IIEACGLLEEALNKGLCTQSSMFDETICGLCQRGL 396 (453)
Q Consensus 362 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 396 (453)
.-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 33 h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 33 HISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 34445555555444433344443333444444443
No 339
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=28.94 E-value=4.9e+02 Score=26.71 Aligned_cols=53 Identities=9% Similarity=0.087 Sum_probs=38.9
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcc
Q 039177 85 FVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIP 143 (453)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 143 (453)
.++..|...+..+.+.++..++ +.+...--.+..+|..+|++++|...|++.-
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~~------~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGGC------CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHhcHHHHHHHHHhhc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3677788888887766655443 3444444567888999999999999998854
No 340
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=27.99 E-value=85 Score=23.26 Aligned_cols=45 Identities=16% Similarity=0.113 Sum_probs=23.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 039177 211 NVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQE 255 (453)
Q Consensus 211 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 255 (453)
.++..+...+..-.|.++++.+.+.+...+..|..-.|..+...|
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 344444444445556666666665555555555444555555444
No 341
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=27.78 E-value=97 Score=23.14 Aligned_cols=33 Identities=18% Similarity=0.040 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCC
Q 039177 363 IEACGLLEEALNKGLCTQSSMFDETICGLCQRG 395 (453)
Q Consensus 363 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 395 (453)
-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 34 ~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 34 ATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp BCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 344455555444443334444333333444443
No 342
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=27.74 E-value=2.3e+02 Score=22.58 Aligned_cols=63 Identities=21% Similarity=0.185 Sum_probs=39.0
Q ss_pred HHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCC
Q 039177 209 YTNVIRSLVK---KEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQED-----YVKAEELFDELLVLGL 272 (453)
Q Consensus 209 ~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~-----~~~a~~~~~~m~~~g~ 272 (453)
+..+|+++.+ -.+.+.|+-.+-+|.+.| .|.-..-..++-+.-..|. ...|...++.....|.
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3445555543 478889999999999888 6666665666666655553 2234444444455554
No 343
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=27.47 E-value=1.3e+02 Score=19.49 Aligned_cols=29 Identities=17% Similarity=0.121 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 039177 224 DALGILNQMKSDGIKPDIVCYTMVLNGVI 252 (453)
Q Consensus 224 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 252 (453)
.+.++++.+.+.+...+..|..-.+..+.
T Consensus 35 s~~el~~~l~~~~~~is~~TVyR~L~~L~ 63 (83)
T 2fu4_A 35 SAEDLYKRLIDMGEEIGLATVYRVLNQFD 63 (83)
T ss_dssp CHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCCHhhHHHHHHHHH
Confidence 34444444443333333333333333333
No 344
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=27.32 E-value=2.2e+02 Score=22.23 Aligned_cols=157 Identities=8% Similarity=-0.053 Sum_probs=78.1
Q ss_pred CCcchHHHHHHHhhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039177 59 KQPHILSSLLHSFSIYNCEPPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNL 138 (453)
Q Consensus 59 ~~~~~~~~ll~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 138 (453)
.++..+..++..+. .++...=...+..+.+.+..+....+. .+.. .++..+-...+.++.+.|..+....+
T Consensus 16 ~~~~~~~~L~~~L~----~~~~~vR~~A~~~L~~~~~~~~~~~L~-~~l~----~~~~~vr~~a~~aL~~~~~~~~~~~L 86 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQ----DDSYYVRRAAAYALGKIGDERAVEPLI-KALK----DEDAWVRRAAADALGQIGDERAVEPL 86 (211)
T ss_dssp CCGGGHHHHHHHTT----CSSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT----CSCHHHHHHHHHHHHHHCCGGGHHHH
T ss_pred cCHhHHHHHHHHHc----CCCHHHHHHHHHHHHHhCCccHHHHHH-HHHc----CCCHHHHHHHHHHHHhhCCHHHHHHH
Confidence 34556666666553 356666666777777777644333333 3332 24566666666777766653322222
Q ss_pred HhhcccCCCCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHh
Q 039177 139 FYKIPKFRINRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVK 218 (453)
Q Consensus 139 ~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 218 (453)
.+ +.. .+|..+-...+.++.+.++. .+...+..+.. .++..+-...+.++.+
T Consensus 87 ~~-------------------~l~---~~~~~vr~~a~~aL~~~~~~---~~~~~L~~~l~---d~~~~vr~~a~~aL~~ 138 (211)
T 3ltm_A 87 IK-------------------ALK---DEDGWVRQSAAVALGQIGDE---RAVEPLIKALK---DEDWFVRIAAAFALGE 138 (211)
T ss_dssp HH-------------------HTT---CSSHHHHHHHHHHHHHHCCG---GGHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred HH-------------------HHc---CCCHHHHHHHHHHHHHhCcH---HHHHHHHHHHh---CCCHHHHHHHHHHHHH
Confidence 11 111 24555555566666666553 23333333332 2455555555555555
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 039177 219 KEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQED 256 (453)
Q Consensus 219 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 256 (453)
.|..+ +...+..+.+ .++..+-...+.++.+.+.
T Consensus 139 ~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 139 IGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred cCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 55433 3333333332 2344444455555555554
No 345
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=26.45 E-value=1.2e+02 Score=18.66 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=11.6
Q ss_pred CCCHHHHHHHHHHHhhCCCCCC
Q 039177 394 RGLVRKALELLKQMADKDVSPG 415 (453)
Q Consensus 394 ~g~~~~A~~~~~~m~~~~~~p~ 415 (453)
.|+.+.|+..+-+|...+..|+
T Consensus 36 ~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTCHHHHHHHHHHSSCCCCSCC
T ss_pred CCCHHHHHHHHHcCcCCCCCCC
Confidence 3455555555555554444443
No 346
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=26.02 E-value=2.5e+02 Score=22.35 Aligned_cols=46 Identities=15% Similarity=0.052 Sum_probs=31.1
Q ss_pred HHHHHHHH---hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 039177 210 TNVIRSLV---KKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQE 255 (453)
Q Consensus 210 ~~li~~~~---~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 255 (453)
..+|+++. +-.+.+.|+-.+-+|.+.|-.|.-..-..++-+.-..|
T Consensus 8 Yd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 8 YDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34455554 34788889999999988887766666555555555444
No 347
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=25.84 E-value=81 Score=21.73 Aligned_cols=58 Identities=16% Similarity=0.150 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHH-----HhhCCCCCCHHHHHHHH
Q 039177 364 EACGLLEEALNKGLCTQSSMFDETICGLCQRGLVRKALELLKQ-----MADKDVSPGARVWEALL 423 (453)
Q Consensus 364 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-----m~~~~~~p~~~~~~~ll 423 (453)
.|.++.++...-|+.|+..+...++..|...+. + +.++.++ ....|..|+..+.+.+=
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~FE 89 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSFE 89 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 466777777777888888888888877776664 2 3332222 12357778777776553
No 348
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=25.34 E-value=1.8e+02 Score=21.03 Aligned_cols=48 Identities=10% Similarity=0.106 Sum_probs=36.2
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChh
Q 039177 85 FVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQ 133 (453)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 133 (453)
.++..+...+..-.|.++++.+.+. +...+..+.-..++.+.+.|-+.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~-~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRR-GENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCCEE
Confidence 3566677777788999999999887 44556667777788888888654
No 349
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=25.33 E-value=2.3e+02 Score=21.69 Aligned_cols=51 Identities=10% Similarity=-0.012 Sum_probs=31.7
Q ss_pred cCChhHHHHHHHHHHhCCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 039177 219 KEKVFDALGILNQMKSDGIKP--DIVCYTMVLN-G-----VIVQEDYVKAEELFDELLV 269 (453)
Q Consensus 219 ~g~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~-~-----~~~~g~~~~a~~~~~~m~~ 269 (453)
.|++-+|.++|+..=.....+ ....|..||. . ..+.|+...|..++.+...
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 377777777777776554444 4455666666 2 2245777777777776644
No 350
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=25.24 E-value=3.4e+02 Score=23.66 Aligned_cols=27 Identities=11% Similarity=0.244 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhhccc
Q 039177 118 IFIDLIKTYADAHRFQDSVNLFYKIPK 144 (453)
Q Consensus 118 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 144 (453)
-...++.=|...|+.++|...++++..
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~ 39 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELAS 39 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 345678888899999999999988753
No 351
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=25.17 E-value=1.5e+02 Score=20.25 Aligned_cols=13 Identities=15% Similarity=0.509 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHC
Q 039177 328 NRLRELVKEMKWK 340 (453)
Q Consensus 328 ~~a~~~~~~~~~~ 340 (453)
++|.++++.+.++
T Consensus 54 ~~ar~Lld~L~~r 66 (97)
T 3ygs_P 54 DQARQLIIDLETR 66 (97)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHc
Confidence 3333333333333
No 352
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=24.77 E-value=2.2e+02 Score=25.42 Aligned_cols=68 Identities=12% Similarity=0.029 Sum_probs=50.5
Q ss_pred ChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 039177 168 DGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDG 236 (453)
Q Consensus 168 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 236 (453)
+..+|..+|..+....+++.+++..+++.+..-. .++...-..|+-.+.+--..++...+.+-|.+.+
T Consensus 22 ~~~t~~~il~~l~~g~~Ls~eEa~~~~~~i~~G~-~~~~QiaAfL~Alr~kGet~eEi~g~~~am~~~~ 89 (377)
T 3r88_A 22 SVPSWPQILGRLTDNRDLARGQAAWAMDQIMTGN-ARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHA 89 (377)
T ss_dssp --CCHHHHHHHHHTTCCCCTTHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhC
Confidence 4458999999999999998899999999988754 3445555556666667667788777777777643
No 353
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=24.45 E-value=1.8e+02 Score=23.72 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=11.9
Q ss_pred HHhcCCCChHHHHHHHHHHHHcCCC
Q 039177 179 VCEQRDLSSDELLGFVQEMKKLGFC 203 (453)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~~~~~g~~ 203 (453)
.+..|+. +.+..+++.+.+.|..
T Consensus 9 A~~~g~~--~~v~~ll~~l~~~g~~ 31 (256)
T 2etb_A 9 VVSRGVP--EELTGLLEYLRWNSKY 31 (256)
T ss_dssp HHHHTCG--GGGTTHHHHHHHHTCC
T ss_pred HHHcCCH--HHHHHHHHHHHHcCCC
Confidence 4455555 4444555555555543
No 354
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=24.34 E-value=2.5e+02 Score=21.72 Aligned_cols=158 Identities=8% Similarity=-0.028 Sum_probs=79.0
Q ss_pred CCCcchHHHHHHHhhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 039177 58 PKQPHILSSLLHSFSIYNCEPPPEAYHFVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVN 137 (453)
Q Consensus 58 ~~~~~~~~~ll~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 137 (453)
+..+.....++..+. .+|+..-...+.++.+.+..+....+.+.+ . .++..+-...+.++++.|..+....
T Consensus 10 ~~~~~~~~~~i~~L~----~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l-~----~~~~~vr~~a~~~L~~~~~~~~~~~ 80 (201)
T 3ltj_A 10 HTDPEKVEMYIKNLQ----DDSYYVRRAAAYALGKIGDERAVEPLIKAL-K----DEDAWVRRAAADALGQIGDERAVEP 80 (201)
T ss_dssp CCCHHHHHHHHHHTT----CSCHHHHHHHHHHHHHHCCGGGHHHHHHHT-T----CSSHHHHHHHHHHHHHHCCGGGHHH
T ss_pred ccCCcchHHHHHHhc----CCCHHHHHHHHHHHHhcCChhHHHHHHHHH-c----CCCHHHHHHHHHHHHhhCCHHHHHH
Confidence 344455555555553 356666666777777777654444444333 2 3456666666667766665432222
Q ss_pred HHhhcccCCCCcHHHHHHHHHHHHHCCCccChHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHH
Q 039177 138 LFYKIPKFRINRVGFAIEILNCMINDGFCVDGKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLV 217 (453)
Q Consensus 138 ~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 217 (453)
+.. +.. .++..+-...+.++.+.++. .+...+..+.. .++..+-...+.++.
T Consensus 81 L~~-------------------~l~---d~~~~vr~~a~~aL~~~~~~---~~~~~L~~~l~---d~~~~vr~~a~~aL~ 132 (201)
T 3ltj_A 81 LIK-------------------ALK---DEDGWVRQSAAVALGQIGDE---RAVEPLIKALK---DEDWFVRIAAAFALG 132 (201)
T ss_dssp HHH-------------------HTT---CSSHHHHHHHHHHHHHHCCG---GGHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred HHH-------------------HHc---CCCHHHHHHHHHHHHHhCcH---HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 221 111 24555555666666666553 23333333332 245555555555555
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 039177 218 KKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGVIVQED 256 (453)
Q Consensus 218 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 256 (453)
+.+.. .+...+..+... ++...-...+.++.+.|.
T Consensus 133 ~~~~~-~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 133 EIGDE-RAVEPLIKALKD---EDGWVRQSAADALGEIGG 167 (201)
T ss_dssp HHTCG-GGHHHHHHHTTC---SSHHHHHHHHHHHHHHCS
T ss_pred HhCCH-HHHHHHHHHHcC---CCHHHHHHHHHHHHHhCc
Confidence 55543 233333333331 344444555555555554
No 355
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=24.17 E-value=1.5e+02 Score=21.35 Aligned_cols=17 Identities=12% Similarity=0.493 Sum_probs=7.7
Q ss_pred HhcCCHHHHHHHHHHHH
Q 039177 252 IVQEDYVKAEELFDELL 268 (453)
Q Consensus 252 ~~~g~~~~a~~~~~~m~ 268 (453)
...++++.|.+++..+.
T Consensus 72 l~~~dy~~A~~ih~~l~ 88 (118)
T 2yru_A 72 LLHHQWDAADDIHRSLM 88 (118)
T ss_dssp HHHTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 34444444444444443
No 356
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=24.16 E-value=1.6e+02 Score=22.61 Aligned_cols=59 Identities=15% Similarity=0.125 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCC--HHHHHHHHHHHh
Q 039177 348 TYSIMIDGLASKGDIIEACGLLEEALNKGLCTQSSMFDETICGLCQRGL--VRKALELLKQMA 408 (453)
Q Consensus 348 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~ 408 (453)
....+|.=|...|+.++|...++++..... .......+|..-...++ .+.+..++..+.
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~--~~~~V~~~I~~aldrk~~ere~~s~LL~~L~ 72 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLC 72 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCSGG--GGHHHHHHHHHHHTSCHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 456788889999999999999998753322 12223333443333333 333556666664
No 357
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=23.98 E-value=94 Score=19.07 Aligned_cols=27 Identities=7% Similarity=-0.048 Sum_probs=16.1
Q ss_pred HhcCCCChHHHHHHHHHHHHcC-CCcCh
Q 039177 180 CEQRDLSSDELLGFVQEMKKLG-FCFGM 206 (453)
Q Consensus 180 ~~~~~~~~~~a~~~~~~~~~~g-~~~~~ 206 (453)
....+++.+.|...|.++...| ++++.
T Consensus 29 L~~~~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 29 LQDNNWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCHHH
Confidence 3444555577777777776554 44443
No 358
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=23.80 E-value=1.3e+02 Score=18.87 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=11.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039177 350 SIMIDGLASKGDIIEACGLLEEALNKG 376 (453)
Q Consensus 350 ~~li~~~~~~g~~~~A~~~~~~m~~~~ 376 (453)
+.++..++.-.-+++++-.+++..+.|
T Consensus 6 ~Qll~l~Aed~AieDaiy~L~~aL~~g 32 (65)
T 2f6m_A 6 NQLYNLVAQDYALTDTIEALSRMLHRG 32 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 334444444444444444444444444
No 359
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=23.60 E-value=2.4e+02 Score=21.33 Aligned_cols=50 Identities=20% Similarity=0.171 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 039177 292 VEAGIKMIACMEELGSKPDVITYNTLLQALCKVRELNRLRELVKEMKWKGIV 343 (453)
Q Consensus 292 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 343 (453)
.+.+..++..+.+.|+--|...-...+....+.| .....+-.++..+|+.
T Consensus 46 ~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~ 95 (159)
T 3c1d_A 46 AEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGIS 95 (159)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCC
Confidence 3455556666666665544444444555544433 1234555566666664
No 360
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=23.50 E-value=53 Score=27.44 Aligned_cols=14 Identities=14% Similarity=0.143 Sum_probs=6.4
Q ss_pred HHhCCCHHHHHHHH
Q 039177 391 LCQRGLVRKALELL 404 (453)
Q Consensus 391 ~~~~g~~~~A~~~~ 404 (453)
.++.|+.+-+..++
T Consensus 240 A~~~g~~~iv~~Ll 253 (273)
T 2pnn_A 240 AASSGKIGVLAYIL 253 (273)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHhChHHHHHHHH
Confidence 34555554443333
No 361
>1u9p_A PARC; unknown function; 1.90A {Escherichia coli} SCOP: a.43.1.1
Probab=23.46 E-value=1.9e+02 Score=20.78 Aligned_cols=73 Identities=8% Similarity=0.206 Sum_probs=47.7
Q ss_pred cchHHHHHHHhhhcCCCCChhhHHHHHHHHHhcCCcc---------hHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 039177 61 PHILSSLLHSFSIYNCEPPPEAYHFVIKTLAENSQFC---------DISSVLDHIEKRENFETPEFIFIDLIKTYADAHR 131 (453)
Q Consensus 61 ~~~~~~ll~~~~~~~~~p~~~~~~~ll~~~~~~~~~~---------~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 131 (453)
+.+-..+-..-...|...|......|-.++...+... ...+.++.+.+......+..++..++..+..-++
T Consensus 27 ~eLh~~La~~Ak~eGrSLN~eIv~~Le~sl~~~~~~~~~~~s~~~~~l~~~ir~~a~~~~~s~~~ei~~r~~~~~~~~~~ 106 (120)
T 1u9p_A 27 REVLDLVRKVAEENGRSVNSEIYQRVMESFKKEGRIGGTGGSGGGREVLDLVRKVAEENGRSVNSEIYQRVMESFKKEGR 106 (120)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTSCCC-----CSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccCCcccccccccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhh
Confidence 3444455555566677777777777777666655433 4555666665555667788899999999888776
Q ss_pred hh
Q 039177 132 FQ 133 (453)
Q Consensus 132 ~~ 133 (453)
+.
T Consensus 107 ~~ 108 (120)
T 1u9p_A 107 IG 108 (120)
T ss_dssp C-
T ss_pred cc
Confidence 54
No 362
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=23.22 E-value=2.9e+02 Score=22.20 Aligned_cols=92 Identities=10% Similarity=0.024 Sum_probs=0.0
Q ss_pred HHHHHHhc---CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 039177 247 VLNGVIVQ---EDYVKAEELFDELLVLGLVPDVYTYNVYINGLCKQNN-----VEAGIKMIACMEELGSKPDVITYNTLL 318 (453)
Q Consensus 247 ll~~~~~~---g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~-----~~~a~~~~~~m~~~~~~p~~~~~~~li 318 (453)
+|+++.+. .+.+.|+-++.+|++.|-.|.-..-..++.+.-..|. +..|...++.....|..--.......+
T Consensus 38 ~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 117 (213)
T 3ctd_A 38 VISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGLFFLSQAS 117 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 039177 319 QALCKVRELNRLRELVKEMKW 339 (453)
Q Consensus 319 ~~~~~~~~~~~a~~~~~~~~~ 339 (453)
--++..-+...+ ..++...+
T Consensus 118 iyLA~APKSNs~-~A~~~A~~ 137 (213)
T 3ctd_A 118 LYLAISPKSNST-KSIFKAME 137 (213)
T ss_dssp HHHHHSCCCCGG-GHHHHHHH
T ss_pred HHHHcCCccHHH-HHHHHHHH
No 363
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=23.10 E-value=1.7e+02 Score=21.52 Aligned_cols=49 Identities=16% Similarity=0.145 Sum_probs=36.8
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhH
Q 039177 85 FVIKTLAENSQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQD 134 (453)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 134 (453)
.+++.+...+..-.|.++++.+.+. +...+..+.-.-++.+.+.|-+.+
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~~ 66 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHK-GDAVGLTTVYRTLQSLADAGEVDV 66 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTSSEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHCCCEEE
Confidence 4566777777788899999999876 445666677777888888886543
No 364
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=22.77 E-value=4.4e+02 Score=24.07 Aligned_cols=55 Identities=15% Similarity=0.072 Sum_probs=30.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCC
Q 039177 288 KQNNVEAGIKMIACMEELGSKPDVITYNTLLQALCKVRE-----LNRLRELVKEMKWKGI 342 (453)
Q Consensus 288 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-----~~~a~~~~~~~~~~~~ 342 (453)
+.++.+.|+..+..|.+.|..|....-..++.++-..|. +..|...++.....|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 346677777777777777655544444444445444443 3344555555555553
No 365
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=22.70 E-value=3.3e+02 Score=25.85 Aligned_cols=89 Identities=7% Similarity=-0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 039177 172 CSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTNVIRSLVKKEKVFDALGILNQMKSDGIKPDIVCYTMVLNGV 251 (453)
Q Consensus 172 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 251 (453)
|..-+..+...+.-+.........++...=.--+..--.-++..|.+.|-.+.|.++++.+-.+-+. +...| ..+..|
T Consensus 482 W~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f 559 (570)
T 3f3f_C 482 WPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANF 559 (570)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-----------------
T ss_pred hhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHH
Q ss_pred HhcCCHHHHHH
Q 039177 252 IVQEDYVKAEE 262 (453)
Q Consensus 252 ~~~g~~~~a~~ 262 (453)
++.|+++.+..
T Consensus 560 ~rA~~~~~Vk~ 570 (570)
T 3f3f_C 560 SRAGKYELVKS 570 (570)
T ss_dssp -----------
T ss_pred HHcCChhhccC
No 366
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=22.44 E-value=1e+02 Score=25.28 Aligned_cols=57 Identities=12% Similarity=0.004 Sum_probs=32.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhc---CCHHHHHHHHHHHHH
Q 039177 212 VIRSLVKKEKVFDALGILNQMKSDGIKPDI-------VCYTMVLNGVIVQ---EDYVKAEELFDELLV 269 (453)
Q Consensus 212 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~---g~~~~a~~~~~~m~~ 269 (453)
.+...++.|+.+.+..+++.+.+.|..++. .-++.|..++ .. |+.+-+..+++.-..
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~-~~~~~g~~~~v~~Ll~~g~~ 71 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAV-LNLQDGVNACIMPLLQIDKD 71 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHH-HTCBTTBCTTHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHH-HccccchHHHHHHHHhcCCc
Confidence 345556777887777777776666554332 3334444333 34 666666666655443
No 367
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=22.21 E-value=88 Score=26.02 Aligned_cols=61 Identities=10% Similarity=0.050 Sum_probs=33.6
Q ss_pred hHhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCc-------ChhhHHHHHHHHH--hcCChhHHHHHHHHH
Q 039177 169 GKTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCF-------GMVDYTNVIRSLV--KKEKVFDALGILNQM 232 (453)
Q Consensus 169 ~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~-------~~~~~~~li~~~~--~~g~~~~a~~~~~~m 232 (453)
..-.+.|.. .+..|+. +.+..+++...+.+... +..-++.|..+.. +.|+.+-+..+++.-
T Consensus 11 ~~g~t~L~~-A~~~g~~--~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 11 LYDRRSIFD-AVAQSNC--QELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp CCCHHHHHH-HHHTTCS--STTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred cccchHHHH-HHHcCCH--HHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 333444444 4566777 66666776666555322 2333455555544 247777666666654
No 368
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=21.86 E-value=3.1e+02 Score=21.89 Aligned_cols=97 Identities=10% Similarity=0.078 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCcChhhHHH--HHHHHHhcCC----------------hhHHHHHHHH
Q 039177 170 KTCSLILSSVCEQRDLSSDELLGFVQEMKKLGFCFGMVDYTN--VIRSLVKKEK----------------VFDALGILNQ 231 (453)
Q Consensus 170 ~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~~~~g~----------------~~~a~~~~~~ 231 (453)
+-+..+..++......+..+...+++.+.....+.+...-.. ++..+.+-.. ++.|+.+|+.
T Consensus 24 fyf~~~c~aFR~~r~~dFrq~rdi~eall~~~~~~~a~~~k~i~icQfL~RI~eG~~LD~~Fd~d~~lTPLESAl~v~~~ 103 (211)
T 3bqo_A 24 FLCLSLCRAFRDGRSEDFRRTRNSAEAIIHGLSSLTACQLRTIYICQFLTRIAAGKTLDAQFENDERITPLESALMIWGS 103 (211)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHcCCCCCCccCCCCCCChHHHHHHHHHH
Q ss_pred HHhCCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHH
Q 039177 232 MKSDGIKPDIVCYTMVLN-----GVIVQEDYVKAEELFDEL 267 (453)
Q Consensus 232 m~~~~~~~~~~~~~~ll~-----~~~~~g~~~~a~~~~~~m 267 (453)
+.+... .-......|+. .|.+.|.+++|.++|++.
T Consensus 104 I~~e~~-~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~ 143 (211)
T 3bqo_A 104 IEKEHD-KLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERI 143 (211)
T ss_dssp SCSCCC-HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhcc-cHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
No 369
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=21.48 E-value=4.9e+02 Score=24.09 Aligned_cols=46 Identities=11% Similarity=0.117 Sum_probs=31.8
Q ss_pred CCcchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHhhcc
Q 039177 94 SQFCDISSVLDHIEKRENFETPEFIFIDLIKTYADAHRFQDSVNLFYKIP 143 (453)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 143 (453)
.+.+.|.++- .+.|++--...|..-.+.+...|++++|.++--.-+
T Consensus 343 ~n~~lA~~lA----~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP 388 (494)
T 1bpo_A 343 QNPDLALRMA----VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAP 388 (494)
T ss_dssp CCHHHHHHHH----HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSG
T ss_pred CCHHHHHHHH----HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCc
Confidence 4555444433 334677667777777888899999999988876544
No 370
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=21.41 E-value=2.1e+02 Score=22.56 Aligned_cols=16 Identities=19% Similarity=0.069 Sum_probs=8.5
Q ss_pred HHHHhCCCHHHHHHHH
Q 039177 389 CGLCQRGLVRKALELL 404 (453)
Q Consensus 389 ~~~~~~g~~~~A~~~~ 404 (453)
...+..|+.+-+..++
T Consensus 179 ~~A~~~~~~~~v~~Ll 194 (228)
T 2dzn_A 179 FHALAEGHGDAAVLLV 194 (228)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHH
Confidence 3445566665555444
No 371
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=21.18 E-value=2.8e+02 Score=21.20 Aligned_cols=50 Identities=10% Similarity=-0.033 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHHCCCCc--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 039177 325 RELNRLRELVKEMKWKGIVL--NLQTYSIMID-G-----LASKGDIIEACGLLEEALN 374 (453)
Q Consensus 325 ~~~~~a~~~~~~~~~~~~~p--~~~~~~~li~-~-----~~~~g~~~~A~~~~~~m~~ 374 (453)
|++-+|.++|+++=+....+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 77777777777766654444 4455666666 2 2346777777777777755
No 372
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=20.57 E-value=6e+02 Score=24.77 Aligned_cols=34 Identities=18% Similarity=0.362 Sum_probs=27.4
Q ss_pred HHHHhcCChhHHHHHHhhcccCCCCcHHHHHHHHHHHHH
Q 039177 124 KTYADAHRFQDSVNLFYKIPKFRINRVGFAIEILNCMIN 162 (453)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a~~~~~~m~~ 162 (453)
.-+...|++++|+.+|.- .++++.++++++..+.
T Consensus 451 ~~ae~~G~~~dAi~LY~L-----a~~~d~vl~lln~~Ls 484 (661)
T 2qx5_A 451 RRADEDGRIYDSILLYQL-----AEEYDIVITLVNSLLS 484 (661)
T ss_dssp HHHHHTTCHHHHHHHHHH-----TTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHH-----hcCHHHHHHHHHHHHH
Confidence 345678999999999988 4678888888887765
No 373
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=20.06 E-value=5e+02 Score=23.69 Aligned_cols=55 Identities=7% Similarity=-0.125 Sum_probs=31.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCC
Q 039177 323 KVRELNRLRELVKEMKWKGIVLNLQTYSIMIDGLASKGD-----IIEACGLLEEALNKGL 377 (453)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-----~~~A~~~~~~m~~~~~ 377 (453)
+.++.+.|+..+..|.+.|..|....-..++.+.-.-|. ...|...++....-|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 456777788888888877776655554555555444443 2234444555544453
Done!