BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039180
(790 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 84/358 (23%), Positives = 152/358 (42%), Gaps = 70/358 (19%)
Query: 131 IGVYGMGGIGKTTLVKEFAR-RAIEDELY----DMVVFSEVTQSPDIKQIQ--------- 176
+ ++GM G GK+ L E R ++ + + V + +S + ++Q
Sbjct: 150 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQD 209
Query: 177 QEIAEKLGLELSEEAEFRRASRMFERLKNEKKILLILDNTWKSLDLGTIGIPFGVEHRGC 236
+ +++L L + EEA+ R M L+ + LLILD+ W S L C
Sbjct: 210 ESFSQRLPLNI-EEAKDRLRILM---LRKHPRSLLILDDVWDSWVLKAFD-------SQC 258
Query: 237 KLLFTTRDLDVLIRMGSEKNF-----SIGILNEQEAWRLFKIIAGAYVENRELKSTATSV 291
++L TTRD V + K S+G E LF + A +L A S+
Sbjct: 259 QILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKA-----DLPEQAHSI 313
Query: 292 AKACRGLPIALTIVVKALRNKELP-EWKNALQELQ------MPSETSFDEGVPAEAYSTI 344
K C+G P+ ++++ LR+ P W+ L++LQ + +S+D EA S
Sbjct: 314 IKECKGSPLVVSLIGALLRD--FPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMS-- 369
Query: 345 ELSYKYLGKQLKE-----TILLCSLIAPTSIMDLINYTMGFGVLKLEEAHNKLHAWVRQL 399
+S + L + +K+ +IL + PT ++ ++ ++ EE + L +V
Sbjct: 370 -ISVEMLREDIKDYYTDLSILQKDVKVPTKVLCIL------WDMETEEVEDILQEFV--- 419
Query: 400 RDSCLLLVD--GSSKFFSMHDVLRDVAISIAC---RDMNAFVVRNKNMWEWPN---PD 449
+ LL D G S + +HD+ D C +D++ ++ + P+ PD
Sbjct: 420 -NKSLLFCDRNGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPD 476
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 84/358 (23%), Positives = 152/358 (42%), Gaps = 70/358 (19%)
Query: 131 IGVYGMGGIGKTTLVKEFAR-RAIEDELY----DMVVFSEVTQSPDIKQIQ--------- 176
+ ++GM G GK+ L E R ++ + + V + +S + ++Q
Sbjct: 156 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQD 215
Query: 177 QEIAEKLGLELSEEAEFRRASRMFERLKNEKKILLILDNTWKSLDLGTIGIPFGVEHRGC 236
+ +++L L + EEA+ R M L+ + LLILD+ W S L C
Sbjct: 216 ESFSQRLPLNI-EEAKDRLRILM---LRKHPRSLLILDDVWDSWVLKAFD-------SQC 264
Query: 237 KLLFTTRDLDVLIRMGSEKNF-----SIGILNEQEAWRLFKIIAGAYVENRELKSTATSV 291
++L TTRD V + K S+G E LF + A +L A S+
Sbjct: 265 QILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKA-----DLPEQAHSI 319
Query: 292 AKACRGLPIALTIVVKALRNKELPE-WKNALQELQ------MPSETSFDEGVPAEAYSTI 344
K C+G P+ ++++ LR + P W+ L++LQ + +S+D EA S
Sbjct: 320 IKECKGSPLVVSLIGALLR--DFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMS-- 375
Query: 345 ELSYKYLGKQLKE-----TILLCSLIAPTSIMDLINYTMGFGVLKLEEAHNKLHAWVRQL 399
+S + L + +K+ +IL + PT ++ ++ ++ EE + L +V +
Sbjct: 376 -ISVEMLREDIKDYYTDLSILQKDVKVPTKVLCIL------WDMETEEVEDILQEFVNK- 427
Query: 400 RDSCLLLVD--GSSKFFSMHDVLRDVAISIAC---RDMNAFVVRNKNMWEWPN---PD 449
LL D G S + +HD+ D C +D++ ++ + P+ PD
Sbjct: 428 ---SLLFCDRNGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPD 482
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 89/212 (41%), Gaps = 32/212 (15%)
Query: 131 IGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDI-KQIQQEIAEKLG---LE 186
+ +YGM G GK+ L E A+ D FS I KQ + + KL +
Sbjct: 150 VTIYGMAGCGKSVLAAE----AVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMR 205
Query: 187 LSEEAEF-RRASRMFERLKNEKKIL---------LILDNTWKSLDLGTIGIPFGVEHRGC 236
L +E F +R E K+ ++L LILD+ W L C
Sbjct: 206 LDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFD-------NQC 258
Query: 237 KLLFTTRDLDVLIR-MGSEKNFSI-GILNEQEAWRLFKIIAGAYVENRELKSTATSVAKA 294
++L TTRD V MG + + L ++ + + ++ +L + A S+ K
Sbjct: 259 QILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVN--MKKEDLPAEAHSIIKE 316
Query: 295 CRGLPIALTIVVKALRNKELPE-WKNALQELQ 325
C+G P+ ++++ LR + P W L++LQ
Sbjct: 317 CKGSPLVVSLIGALLR--DFPNRWAYYLRQLQ 346
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 88/212 (41%), Gaps = 32/212 (15%)
Query: 131 IGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDI-KQIQQEIAEKLG---LE 186
+ +YGM G GK+ L E A+ D FS I KQ + + KL +
Sbjct: 157 VTIYGMAGCGKSVLAAE----AVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMR 212
Query: 187 LSEEAEF-RRASRMFERLKNEKKIL---------LILDNTWKSLDLGTIGIPFGVEHRGC 236
L +E F +R E K+ ++L LILD+ W L C
Sbjct: 213 LDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFD-------NQC 265
Query: 237 KLLFTTRDLDVLIR-MGSEKNFSI-GILNEQEAWRLFKIIAGAYVENRELKSTATSVAKA 294
++L TT D V MG + + L ++ + + ++ +L + A S+ K
Sbjct: 266 QILLTTSDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVN--MKKEDLPAEAHSIIKE 323
Query: 295 CRGLPIALTIVVKALRNKELPE-WKNALQELQ 325
C+G P+ ++++ LR + P W L++LQ
Sbjct: 324 CKGSPLVVSLIGALLR--DFPNRWAYYLRQLQ 353
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 527 QTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKAL-GELTKLRLSDLTDCFHLK 585
Q L L+ + + ++ + L NL+ L F + + +P + +LT+L DL D HLK
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLK 94
Query: 586 VIAPNVISSLTRLEELYMGNCPIEWEVE 613
I +L L +Y+ N P W+ E
Sbjct: 95 SIPRGAFDNLKSLTHIYLYNNP--WDCE 120
>pdb|2CCG|A Chain A, Crystal Structure Of His-Tagged S. Aureus Thymidylate
Kinase Complexed With Thymidine Monophosphate (Tmp)
pdb|2CCG|B Chain B, Crystal Structure Of His-Tagged S. Aureus Thymidylate
Kinase Complexed With Thymidine Monophosphate (Tmp)
Length = 225
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 135 GMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFR 194
G G GKTT++ E R ++D YD+++ E P ++I++ + E +++ EA
Sbjct: 29 GPEGSGKTTVINEVYHRLVKD--YDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLF 86
Query: 195 RASR 198
ASR
Sbjct: 87 AASR 90
>pdb|4DWJ|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|C Chain C, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|D Chain D, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|E Chain E, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|F Chain F, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|G Chain G, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|H Chain H, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4EAQ|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With
3'-Azido-3'-Deoxythymidine-5'-Monophosphate
pdb|4EAQ|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With
3'-Azido-3'-Deoxythymidine-5'-Monophosphate
pdb|4F4I|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Apo-Form
pdb|4F4I|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Apo-Form
Length = 229
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 135 GMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFR 194
G G GKTT++ E R ++D YD+++ E P ++I++ + E +++ EA
Sbjct: 33 GPEGSGKTTVINEVYHRLVKD--YDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLF 90
Query: 195 RASR 198
ASR
Sbjct: 91 AASR 94
>pdb|2CCJ|A Chain A, Crystal Structure Of S. Aureus Thymidylate Kinase
Complexed With Thymidine Monophosphate
pdb|2CCJ|B Chain B, Crystal Structure Of S. Aureus Thymidylate Kinase
Complexed With Thymidine Monophosphate
pdb|2CCK|A Chain A, Crystal Structure Of Unliganded S. Aureus Thymidylate
Kinase
pdb|2CCK|B Chain B, Crystal Structure Of Unliganded S. Aureus Thymidylate
Kinase
pdb|4GFD|A Chain A, Thymidylate Kinase (Tmk) From S. Aureus In Complex With
Tk-666
pdb|4GFD|B Chain B, Thymidylate Kinase (Tmk) From S. Aureus In Complex With
Tk-666
pdb|4GSY|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus Bound To Inhibitor.
pdb|4GSY|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus Bound To Inhibitor.
pdb|4HDC|A Chain A, Discovery Of Selective And Potent Inhibitors Of
Gram-Positive Bacterial Thymidylate Kinase (Tmk:
Compound 41)
pdb|4HDC|B Chain B, Discovery Of Selective And Potent Inhibitors Of
Gram-Positive Bacterial Thymidylate Kinase (Tmk:
Compound 41)
pdb|4HEJ|A Chain A, Discovery Of Selective And Potent Inhibitors Of
Gram-Positive Bacterial Thymidylate Kinase (Tmk):
Compund 16
pdb|4HEJ|B Chain B, Discovery Of Selective And Potent Inhibitors Of
Gram-Positive Bacterial Thymidylate Kinase (Tmk):
Compund 16
pdb|4HLC|A Chain A, Sulfonylpiperidines As Novel, Antibacterial Inhibitors Of
Gram- Positive Thymidylate Kinase (Tmk): Compound 5
pdb|4HLC|B Chain B, Sulfonylpiperidines As Novel, Antibacterial Inhibitors Of
Gram- Positive Thymidylate Kinase (Tmk): Compound 5
pdb|4HLD|A Chain A, Sulfonylpiperidines As Novel, Antibacterial Inhibitors Of
Gram- Positive Thymidylate Kinase (Tmk): Compound 11
pdb|4HLD|B Chain B, Sulfonylpiperidines As Novel, Antibacterial Inhibitors Of
Gram- Positive Thymidylate Kinase (Tmk): Compound 11
Length = 205
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 135 GMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFR 194
G G GKTT++ E R ++D YD+++ E P ++I++ + E +++ EA
Sbjct: 9 GPEGSGKTTVINEVYHRLVKD--YDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLF 66
Query: 195 RASR 198
ASR
Sbjct: 67 AASR 70
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 2/110 (1%)
Query: 524 VNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKAL-GELTKLRLSDLTDCF 582
NL+ L L ++ L+ + + KL NL L + + LPK + +LT L DL D
Sbjct: 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDL-DNN 167
Query: 583 HLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPW 632
L+ + V LT+L++L + + ++ + ++ + L+N PW
Sbjct: 168 QLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPW 217
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 73/168 (43%), Gaps = 24/168 (14%)
Query: 547 LKNLKILSFVRSDIVQLPKAL-GELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGN 605
L N KI++F S + +LP AL ++ L +L D ++ I + +++LYMG
Sbjct: 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND-LQIEEIDTYAFAYAHTIQKLYMGF 108
Query: 606 CPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFL--TQKLERFKIS-- 661
I + N+P LT L ++ + S LP T KL +S
Sbjct: 109 NAIRYLPPHV-----------FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 157
Query: 662 ----IGNESFMPSQSVELPNLEALELCAIN---VDKIWHYNLLPFMLS 702
I +++F + S++ L + L ++ + ++H N+ +LS
Sbjct: 158 NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS 205
>pdb|2LJU|A Chain A, Solution Structure Of Putative Oxidoreductase From
Ehrlichia Chaffeensis, Seattle Structural Genomics
Center For Infectious Disease (Ssgcid)
Length = 108
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 385 LEEAHNKLHAWVRQLRDSCLLLVDGSSKFFSMHDVLRDVAISIACRDMN-AFVVRNK 440
++ H+KL AW + SC + + HD + V +S R++ A+ V +K
Sbjct: 24 MQSGHSKLKAWKLEFEPSCTQYTEPLMNWTGSHDTKQQVCLSFTTRELAIAYAVAHK 80
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 524 VNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKAL-GELTKLRLSDLTDCF 582
NL+ L L ++ L+ + + KL NL L+ + + LPK + +LT L DL+
Sbjct: 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS-YN 167
Query: 583 HLKVIAPNVISSLTRLEELYM 603
L+ + V LT+L++L +
Sbjct: 168 QLQSLPEGVFDKLTQLKDLRL 188
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 8/116 (6%)
Query: 524 VNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKA----LGELTKLRLSDLT 579
VNL L LD++ L+ + + L L LS +++ LPK L L +LRL +
Sbjct: 109 VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN-- 166
Query: 580 DCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTT 635
LK + LT L+ L + N ++ E A + +L PW T
Sbjct: 167 --NQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 15/116 (12%)
Query: 547 LKNLKILSFVRSDIVQLPKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNC 606
L NL+ L+ ++ ++P L L KL DL+ HL I P L L++L+M
Sbjct: 184 LSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSG-NHLSAIRPGSFQGLMHLQKLWMIQS 241
Query: 607 PIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFLT--QKLERFKI 660
I+ +ER + NL L + + N ++LP T LER +
Sbjct: 242 QIQ-VIER----------NAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,430,262
Number of Sequences: 62578
Number of extensions: 853539
Number of successful extensions: 2679
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 2640
Number of HSP's gapped (non-prelim): 84
length of query: 790
length of database: 14,973,337
effective HSP length: 107
effective length of query: 683
effective length of database: 8,277,491
effective search space: 5653526353
effective search space used: 5653526353
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)