Query 039180
Match_columns 790
No_of_seqs 536 out of 4000
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 07:06:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039180.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039180hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.6E-81 3.4E-86 718.1 45.6 735 5-782 14-848 (889)
2 PLN03210 Resistant to P. syrin 100.0 3.9E-59 8.5E-64 565.0 44.5 597 125-781 204-911 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 5.9E-40 1.3E-44 341.9 14.7 257 126-385 17-284 (287)
4 KOG0444 Cytoskeletal regulator 99.9 6.7E-26 1.5E-30 234.7 -4.7 301 450-780 53-379 (1255)
5 PLN00113 leucine-rich repeat r 99.9 4.6E-22 9.9E-27 242.6 18.0 246 500-772 139-389 (968)
6 PLN00113 leucine-rich repeat r 99.9 5.2E-22 1.1E-26 242.0 17.0 303 451-773 117-438 (968)
7 KOG4194 Membrane glycoprotein 99.9 3.6E-23 7.9E-28 213.4 3.5 315 450-781 100-433 (873)
8 KOG0444 Cytoskeletal regulator 99.9 1.4E-23 3E-28 217.7 -2.3 275 450-749 101-380 (1255)
9 KOG4194 Membrane glycoprotein 99.9 1.2E-22 2.5E-27 209.7 3.4 294 451-772 148-448 (873)
10 PLN03210 Resistant to P. syrin 99.8 8.2E-19 1.8E-23 213.9 17.2 307 451-778 588-945 (1153)
11 KOG0472 Leucine-rich repeat pr 99.8 4.6E-21 1E-25 189.7 -3.1 195 451-663 113-307 (565)
12 KOG0472 Leucine-rich repeat pr 99.7 2.2E-20 4.7E-25 185.0 -8.2 240 450-716 66-308 (565)
13 PRK15387 E3 ubiquitin-protein 99.7 3.1E-16 6.8E-21 177.3 14.0 252 435-743 206-457 (788)
14 PRK15370 E3 ubiquitin-protein 99.6 5.6E-16 1.2E-20 176.5 11.7 161 502-690 221-381 (754)
15 KOG0618 Serine/threonine phosp 99.6 1.5E-17 3.2E-22 181.8 -1.5 229 491-742 255-487 (1081)
16 PRK15387 E3 ubiquitin-protein 99.6 2.5E-15 5.5E-20 170.0 16.1 71 501-581 242-312 (788)
17 KOG0618 Serine/threonine phosp 99.6 2.9E-17 6.3E-22 179.5 -0.8 267 472-775 217-488 (1081)
18 KOG0617 Ras suppressor protein 99.6 4.6E-17 1E-21 143.0 -3.8 142 492-649 48-191 (264)
19 PRK15370 E3 ubiquitin-protein 99.6 5E-15 1.1E-19 168.8 11.4 231 450-717 197-427 (754)
20 KOG4237 Extracellular matrix p 99.6 2.8E-16 6E-21 156.1 -2.1 146 457-607 51-199 (498)
21 KOG0617 Ras suppressor protein 99.5 2.5E-16 5.3E-21 138.4 -3.2 158 499-691 31-188 (264)
22 KOG4658 Apoptotic ATPase [Sign 99.5 8.3E-15 1.8E-19 169.6 7.9 298 463-779 512-821 (889)
23 cd00116 LRR_RI Leucine-rich re 99.4 1.1E-13 2.4E-18 146.7 4.5 238 496-742 18-289 (319)
24 cd00116 LRR_RI Leucine-rich re 99.4 2.7E-13 5.9E-18 143.8 5.0 251 505-774 2-289 (319)
25 PRK04841 transcriptional regul 99.4 2.5E-11 5.4E-16 147.7 22.5 273 127-428 31-332 (903)
26 KOG4237 Extracellular matrix p 99.2 1.1E-12 2.5E-17 130.7 0.1 276 434-718 50-359 (498)
27 KOG0532 Leucine-rich repeat (L 99.2 7.2E-13 1.6E-17 138.0 -4.1 172 478-669 78-250 (722)
28 TIGR03015 pepcterm_ATPase puta 99.2 2.5E-09 5.4E-14 110.1 20.9 178 128-309 43-242 (269)
29 COG2909 MalT ATP-dependent tra 99.2 2.6E-10 5.6E-15 125.6 13.6 278 124-430 33-340 (894)
30 KOG0532 Leucine-rich repeat (L 99.2 2.5E-12 5.5E-17 134.0 -1.8 196 437-652 57-255 (722)
31 PF05729 NACHT: NACHT domain 99.2 3.6E-10 7.7E-15 107.1 12.8 142 129-275 1-163 (166)
32 KOG3207 Beta-tubulin folding c 99.1 8E-12 1.7E-16 126.5 0.7 205 521-741 118-336 (505)
33 PRK00411 cdc6 cell division co 99.1 6.3E-08 1.4E-12 105.7 26.8 263 128-408 55-358 (394)
34 KOG1259 Nischarin, modulator o 99.0 5.4E-11 1.2E-15 114.5 0.8 181 452-649 237-417 (490)
35 PF14580 LRR_9: Leucine-rich r 99.0 1.4E-10 3.1E-15 107.8 2.9 107 498-608 16-125 (175)
36 PF14580 LRR_9: Leucine-rich r 99.0 2.9E-10 6.2E-15 105.8 4.1 80 500-581 41-123 (175)
37 KOG3207 Beta-tubulin folding c 99.0 1.6E-10 3.4E-15 117.3 2.0 205 450-689 119-339 (505)
38 KOG1909 Ran GTPase-activating 99.0 2.1E-10 4.5E-15 113.4 2.0 237 497-742 26-309 (382)
39 KOG1259 Nischarin, modulator o 98.9 3.5E-10 7.5E-15 109.0 1.2 44 517-561 207-250 (490)
40 COG4886 Leucine-rich repeat (L 98.9 1.6E-09 3.5E-14 118.3 5.0 173 498-686 113-287 (394)
41 TIGR02928 orc1/cdc6 family rep 98.8 1.5E-06 3.2E-11 93.8 26.5 266 128-408 40-350 (365)
42 COG4886 Leucine-rich repeat (L 98.8 3.6E-09 7.7E-14 115.6 5.6 192 505-718 97-290 (394)
43 KOG4341 F-box protein containi 98.8 5.9E-10 1.3E-14 112.6 -2.5 264 496-781 159-444 (483)
44 KOG1909 Ran GTPase-activating 98.7 8.9E-09 1.9E-13 102.1 3.4 250 519-774 25-309 (382)
45 KOG2120 SCF ubiquitin ligase, 98.7 1.4E-09 3E-14 105.0 -2.3 111 652-774 259-374 (419)
46 KOG4341 F-box protein containi 98.6 2.1E-09 4.6E-14 108.7 -3.9 270 501-786 138-424 (483)
47 PRK06893 DNA replication initi 98.6 2.7E-07 5.8E-12 91.7 10.9 151 129-307 40-205 (229)
48 PF13173 AAA_14: AAA domain 98.6 1.1E-07 2.4E-12 85.2 6.4 120 128-267 2-127 (128)
49 KOG0531 Protein phosphatase 1, 98.6 1.2E-08 2.5E-13 111.6 0.1 106 498-608 92-198 (414)
50 KOG0531 Protein phosphatase 1, 98.5 8.4E-09 1.8E-13 112.7 -1.6 214 499-741 70-287 (414)
51 PF01637 Arch_ATPase: Archaeal 98.5 2.3E-07 5.1E-12 93.3 9.0 174 128-304 20-233 (234)
52 PF13855 LRR_8: Leucine rich r 98.5 7.3E-08 1.6E-12 73.5 3.9 60 501-560 1-61 (61)
53 KOG2120 SCF ubiquitin ligase, 98.5 4.3E-09 9.3E-14 101.7 -3.8 57 502-558 186-244 (419)
54 PLN03150 hypothetical protein; 98.5 1.8E-07 3.9E-12 107.0 8.5 104 503-607 420-526 (623)
55 TIGR00635 ruvB Holliday juncti 98.5 9.4E-06 2E-10 85.1 20.4 248 128-408 30-289 (305)
56 KOG2982 Uncharacterized conser 98.5 4.1E-08 8.8E-13 95.0 1.4 71 674-749 197-267 (418)
57 PF13401 AAA_22: AAA domain; P 98.5 6.3E-07 1.4E-11 80.9 8.5 116 127-244 3-125 (131)
58 COG3903 Predicted ATPase [Gene 98.4 2.6E-07 5.6E-12 94.7 6.3 292 126-429 12-315 (414)
59 PRK00080 ruvB Holliday junctio 98.4 1.4E-05 3.1E-10 84.3 19.8 248 128-408 51-310 (328)
60 KOG2982 Uncharacterized conser 98.4 2.8E-08 6E-13 96.1 -1.6 206 497-739 67-287 (418)
61 PF13855 LRR_8: Leucine rich r 98.4 2.5E-07 5.4E-12 70.6 3.6 57 525-581 2-59 (61)
62 cd01128 rho_factor Transcripti 98.4 1.3E-06 2.7E-11 87.0 9.2 92 127-219 15-115 (249)
63 PLN03150 hypothetical protein; 98.4 6.3E-07 1.4E-11 102.6 8.1 106 480-587 423-531 (623)
64 COG2256 MGS1 ATPase related to 98.4 4.1E-06 8.9E-11 85.5 12.8 151 124-301 44-208 (436)
65 TIGR03420 DnaA_homol_Hda DnaA 98.3 3.5E-06 7.6E-11 84.2 10.8 152 128-307 38-203 (226)
66 PTZ00112 origin recognition co 98.3 0.00013 2.8E-09 82.3 22.7 148 128-276 781-950 (1164)
67 COG1474 CDC6 Cdc6-related prot 98.3 0.0006 1.3E-08 72.1 26.3 259 131-408 45-334 (366)
68 PRK09376 rho transcription ter 98.2 3.2E-06 6.9E-11 87.5 8.3 88 130-218 171-267 (416)
69 PRK13342 recombination factor 98.2 1.9E-05 4E-10 86.1 14.7 154 128-307 36-198 (413)
70 PRK08727 hypothetical protein; 98.2 2E-05 4.2E-10 78.6 12.5 146 129-302 42-201 (233)
71 TIGR00678 holB DNA polymerase 98.2 3.3E-05 7.2E-10 74.5 13.6 147 129-300 15-186 (188)
72 KOG1859 Leucine-rich repeat pr 98.1 1.9E-07 4.2E-12 100.8 -3.5 100 504-608 167-266 (1096)
73 PRK14961 DNA polymerase III su 98.1 5.8E-05 1.3E-09 80.7 15.3 154 128-303 38-218 (363)
74 PRK05564 DNA polymerase III su 98.1 4.8E-05 1.1E-09 79.8 14.4 154 128-303 26-188 (313)
75 KOG1859 Leucine-rich repeat pr 98.1 1E-07 2.2E-12 102.9 -6.1 108 496-608 182-291 (1096)
76 COG3899 Predicted ATPase [Gene 98.1 5.7E-05 1.2E-09 89.0 16.0 210 202-427 149-385 (849)
77 PRK14949 DNA polymerase III su 98.1 7.3E-05 1.6E-09 85.5 15.7 159 129-305 39-220 (944)
78 TIGR00767 rho transcription te 98.1 2E-05 4.4E-10 82.2 10.1 89 130-219 170-267 (415)
79 PRK09087 hypothetical protein; 98.0 2.9E-05 6.4E-10 76.6 10.5 142 128-306 44-196 (226)
80 PRK07003 DNA polymerase III su 98.0 6.9E-05 1.5E-09 84.0 14.3 159 129-305 39-221 (830)
81 TIGR02903 spore_lon_C ATP-depe 98.0 0.0009 1.9E-08 76.3 23.4 181 126-308 173-398 (615)
82 PRK15386 type III secretion pr 98.0 2.1E-05 4.5E-10 82.6 9.2 135 498-663 49-187 (426)
83 PF00308 Bac_DnaA: Bacterial d 98.0 5.7E-05 1.2E-09 74.3 11.7 161 128-305 34-208 (219)
84 PRK06645 DNA polymerase III su 98.0 0.00012 2.7E-09 80.4 15.3 152 129-302 44-226 (507)
85 PRK12402 replication factor C 98.0 7.3E-05 1.6E-09 79.8 13.3 172 128-303 36-224 (337)
86 PF12799 LRR_4: Leucine Rich r 98.0 8.3E-06 1.8E-10 56.8 3.9 39 525-564 2-40 (44)
87 PRK14087 dnaA chromosomal repl 98.0 7.5E-05 1.6E-09 81.6 13.1 168 128-309 141-323 (450)
88 PRK14963 DNA polymerase III su 98.0 0.00015 3.2E-09 80.2 15.4 152 129-302 37-214 (504)
89 PLN03025 replication factor C 97.9 8.8E-05 1.9E-09 78.0 12.8 156 129-300 35-195 (319)
90 KOG2028 ATPase related to the 97.9 0.00011 2.3E-09 73.8 12.3 154 124-299 158-330 (554)
91 PRK14960 DNA polymerase III su 97.9 0.00011 2.4E-09 81.4 13.7 159 128-304 37-218 (702)
92 PRK12323 DNA polymerase III su 97.9 9.6E-05 2.1E-09 81.7 13.1 155 129-305 39-225 (700)
93 PRK08084 DNA replication initi 97.9 8.9E-05 1.9E-09 74.0 12.0 151 128-306 45-210 (235)
94 PRK15386 type III secretion pr 97.9 3.4E-05 7.3E-10 81.0 8.5 61 522-588 50-111 (426)
95 PRK14962 DNA polymerase III su 97.9 0.00021 4.6E-09 78.3 14.6 163 129-309 37-223 (472)
96 PRK04195 replication factor C 97.9 0.00082 1.8E-08 74.9 19.4 159 128-309 39-206 (482)
97 PRK05642 DNA replication initi 97.9 0.00011 2.3E-09 73.3 11.1 151 129-307 46-210 (234)
98 PRK00440 rfc replication facto 97.9 0.00023 4.9E-09 75.3 14.2 157 128-302 38-200 (319)
99 KOG3665 ZYG-1-like serine/thre 97.9 4.1E-06 8.9E-11 95.5 0.9 106 524-642 122-231 (699)
100 cd00009 AAA The AAA+ (ATPases 97.9 5.1E-05 1.1E-09 69.8 8.2 104 128-245 19-130 (151)
101 PF12799 LRR_4: Leucine Rich r 97.8 1.8E-05 3.8E-10 55.1 3.2 39 501-539 1-39 (44)
102 TIGR01242 26Sp45 26S proteasom 97.8 0.00043 9.4E-09 74.3 15.3 150 128-299 156-328 (364)
103 PRK14957 DNA polymerase III su 97.8 0.00037 8.1E-09 77.2 14.5 160 129-306 39-222 (546)
104 PF05621 TniB: Bacterial TniB 97.8 0.00069 1.5E-08 68.1 14.9 176 127-303 60-259 (302)
105 COG5238 RNA1 Ran GTPase-activa 97.8 2.7E-05 6E-10 74.9 4.7 236 498-741 27-313 (388)
106 PRK14956 DNA polymerase III su 97.8 0.00025 5.4E-09 76.5 12.3 170 129-302 41-219 (484)
107 PRK07940 DNA polymerase III su 97.7 0.00047 1E-08 73.8 14.2 150 128-305 36-213 (394)
108 PRK14964 DNA polymerase III su 97.7 0.00049 1.1E-08 75.1 14.3 155 129-302 36-214 (491)
109 PRK14951 DNA polymerase III su 97.7 0.00052 1.1E-08 77.1 14.8 98 206-304 123-224 (618)
110 PRK08903 DnaA regulatory inact 97.7 0.00025 5.5E-09 70.7 11.1 150 128-309 42-203 (227)
111 TIGR02397 dnaX_nterm DNA polym 97.7 0.0009 2E-08 71.9 16.2 159 129-306 37-219 (355)
112 KOG4579 Leucine-rich repeat (L 97.7 3.2E-06 7E-11 72.6 -2.2 91 498-590 50-141 (177)
113 PRK13341 recombination factor 97.7 0.00027 5.8E-09 81.3 12.1 148 127-300 51-212 (725)
114 TIGR00362 DnaA chromosomal rep 97.7 0.00053 1.2E-08 74.8 14.0 159 128-303 136-308 (405)
115 PRK14958 DNA polymerase III su 97.7 0.00049 1.1E-08 76.4 13.1 157 129-303 39-218 (509)
116 PRK07994 DNA polymerase III su 97.7 0.00042 9.2E-09 78.0 12.6 169 129-305 39-220 (647)
117 PRK08691 DNA polymerase III su 97.6 0.00041 9E-09 77.8 12.4 154 129-304 39-219 (709)
118 KOG3665 ZYG-1-like serine/thre 97.6 1.8E-05 3.9E-10 90.4 1.6 34 501-534 60-93 (699)
119 PRK09112 DNA polymerase III su 97.6 0.00069 1.5E-08 71.4 13.1 172 128-305 45-240 (351)
120 TIGR02881 spore_V_K stage V sp 97.6 0.00071 1.5E-08 68.9 12.9 134 127-276 41-192 (261)
121 TIGR02880 cbbX_cfxQ probable R 97.6 0.00068 1.5E-08 69.6 12.5 131 130-276 60-209 (284)
122 KOG4579 Leucine-rich repeat (L 97.6 2.7E-05 5.9E-10 67.1 1.8 82 482-566 60-141 (177)
123 PRK14088 dnaA chromosomal repl 97.6 0.00092 2E-08 73.1 14.0 158 128-301 130-301 (440)
124 PRK05896 DNA polymerase III su 97.6 0.00099 2.2E-08 74.0 14.2 171 129-307 39-223 (605)
125 PF05496 RuvB_N: Holliday junc 97.6 0.00042 9E-09 66.4 9.7 153 127-308 49-224 (233)
126 PRK05707 DNA polymerase III su 97.6 0.0012 2.7E-08 68.9 14.2 151 128-305 22-203 (328)
127 PRK08451 DNA polymerase III su 97.6 0.0015 3.2E-08 72.2 14.8 158 129-305 37-218 (535)
128 CHL00181 cbbX CbbX; Provisiona 97.5 0.0032 6.8E-08 64.7 16.4 132 129-276 60-210 (287)
129 PRK14969 DNA polymerase III su 97.5 0.00093 2E-08 74.7 13.5 159 129-305 39-221 (527)
130 PRK14959 DNA polymerase III su 97.5 0.001 2.2E-08 74.4 13.2 162 128-309 38-225 (624)
131 PF14516 AAA_35: AAA-like doma 97.5 0.0026 5.6E-08 67.1 15.8 177 129-312 32-246 (331)
132 PRK00149 dnaA chromosomal repl 97.5 0.00062 1.4E-08 75.2 11.7 181 127-324 147-349 (450)
133 smart00382 AAA ATPases associa 97.5 0.00025 5.4E-09 64.7 7.3 90 129-221 3-92 (148)
134 PRK14722 flhF flagellar biosyn 97.5 0.0028 6.1E-08 66.7 15.6 89 127-217 136-225 (374)
135 PRK06620 hypothetical protein; 97.5 0.00063 1.4E-08 66.6 9.9 133 129-301 45-185 (214)
136 PF00004 AAA: ATPase family as 97.5 0.00021 4.6E-09 64.3 6.2 69 131-219 1-70 (132)
137 KOG1947 Leucine rich repeat pr 97.5 4.2E-05 9E-10 86.2 1.6 246 497-781 184-445 (482)
138 PRK07471 DNA polymerase III su 97.4 0.00026 5.6E-09 75.0 7.1 95 206-305 140-238 (365)
139 KOG1644 U2-associated snRNP A' 97.4 0.00018 4E-09 66.5 5.0 83 549-643 43-125 (233)
140 COG3267 ExeA Type II secretory 97.4 0.0079 1.7E-07 58.4 16.1 177 127-307 50-247 (269)
141 KOG2543 Origin recognition com 97.4 0.0033 7.1E-08 64.2 14.1 141 129-275 31-193 (438)
142 PRK14955 DNA polymerase III su 97.4 0.0015 3.2E-08 70.8 12.7 174 129-303 39-226 (397)
143 PRK14953 DNA polymerase III su 97.4 0.0043 9.3E-08 68.5 16.2 156 129-306 39-221 (486)
144 PHA02544 44 clamp loader, smal 97.4 0.0011 2.4E-08 69.9 11.3 123 128-273 43-171 (316)
145 PRK09111 DNA polymerase III su 97.4 0.002 4.3E-08 72.7 13.7 173 128-305 46-233 (598)
146 COG1373 Predicted ATPase (AAA+ 97.4 0.00096 2.1E-08 71.9 10.8 117 130-270 39-162 (398)
147 PRK07133 DNA polymerase III su 97.4 0.0034 7.4E-08 71.4 15.3 154 128-304 40-218 (725)
148 PRK14971 DNA polymerase III su 97.4 0.0038 8.2E-08 71.0 15.5 156 128-302 39-219 (614)
149 PRK14950 DNA polymerase III su 97.3 0.0045 9.8E-08 70.5 16.0 170 129-305 39-221 (585)
150 KOG1644 U2-associated snRNP A' 97.3 0.0002 4.3E-09 66.3 4.1 103 502-606 43-150 (233)
151 PRK06647 DNA polymerase III su 97.3 0.0044 9.5E-08 69.6 15.4 154 128-304 38-219 (563)
152 PRK14970 DNA polymerase III su 97.3 0.0045 9.7E-08 66.7 15.1 155 128-300 39-204 (367)
153 PRK07764 DNA polymerase III su 97.3 0.0038 8.2E-08 73.0 15.1 154 129-301 38-217 (824)
154 PRK14086 dnaA chromosomal repl 97.3 0.0035 7.6E-08 69.8 13.9 154 129-299 315-482 (617)
155 PRK14952 DNA polymerase III su 97.3 0.0052 1.1E-07 69.0 15.2 160 129-307 36-222 (584)
156 COG5238 RNA1 Ran GTPase-activa 97.3 0.00016 3.6E-09 69.7 2.6 168 518-689 24-227 (388)
157 PRK08118 topology modulation p 97.2 0.00018 4E-09 67.4 2.8 35 129-163 2-37 (167)
158 PTZ00202 tuzin; Provisional 97.2 0.0092 2E-07 62.9 15.2 141 126-275 284-434 (550)
159 PF13191 AAA_16: AAA ATPase do 97.2 0.00086 1.9E-08 64.4 7.6 30 126-155 22-51 (185)
160 PRK12422 chromosomal replicati 97.2 0.0055 1.2E-07 67.0 14.5 152 128-298 141-306 (445)
161 PRK14954 DNA polymerase III su 97.2 0.0058 1.3E-07 69.1 15.1 171 129-300 39-223 (620)
162 COG1223 Predicted ATPase (AAA+ 97.2 0.0047 1E-07 59.5 12.1 183 84-298 116-318 (368)
163 KOG0989 Replication factor C, 97.2 0.0017 3.6E-08 64.3 9.3 160 127-298 56-223 (346)
164 PRK12723 flagellar biosynthesi 97.2 0.014 3.1E-07 62.1 17.1 89 127-217 173-264 (388)
165 KOG0741 AAA+-type ATPase [Post 97.2 0.011 2.3E-07 62.9 15.4 148 127-295 537-704 (744)
166 PTZ00361 26 proteosome regulat 97.2 0.0029 6.3E-08 68.4 11.8 150 128-299 217-389 (438)
167 PRK06995 flhF flagellar biosyn 97.2 0.024 5.3E-07 61.8 18.8 59 128-186 256-315 (484)
168 PRK06305 DNA polymerase III su 97.2 0.0067 1.5E-07 66.6 14.7 158 129-305 40-223 (451)
169 PF04665 Pox_A32: Poxvirus A32 97.2 0.00094 2E-08 65.5 7.2 35 130-166 15-49 (241)
170 PRK11331 5-methylcytosine-spec 97.2 0.00063 1.4E-08 72.5 6.4 89 128-219 194-284 (459)
171 KOG2123 Uncharacterized conser 97.2 4.9E-05 1.1E-09 73.4 -1.6 81 523-607 18-99 (388)
172 PRK12608 transcription termina 97.2 0.0026 5.5E-08 66.4 10.6 89 129-218 134-231 (380)
173 TIGR03689 pup_AAA proteasome A 97.2 0.0033 7.2E-08 69.1 11.9 137 128-277 216-380 (512)
174 PRK12727 flagellar biosynthesi 97.2 0.01 2.2E-07 64.7 15.3 89 127-217 349-438 (559)
175 TIGR03499 FlhF flagellar biosy 97.1 0.011 2.4E-07 60.7 14.8 88 127-216 193-281 (282)
176 PRK14948 DNA polymerase III su 97.1 0.0099 2.2E-07 67.7 15.6 171 129-305 39-222 (620)
177 PRK05703 flhF flagellar biosyn 97.1 0.01 2.2E-07 64.4 15.0 87 128-216 221-308 (424)
178 PRK05563 DNA polymerase III su 97.1 0.0096 2.1E-07 67.2 15.3 151 129-302 39-217 (559)
179 PRK03992 proteasome-activating 97.1 0.0038 8.1E-08 67.4 11.6 150 127-298 164-336 (389)
180 CHL00195 ycf46 Ycf46; Provisio 97.1 0.0061 1.3E-07 67.1 13.3 152 128-299 259-429 (489)
181 KOG1947 Leucine rich repeat pr 97.1 0.00012 2.6E-09 82.4 -0.4 241 473-750 187-446 (482)
182 PRK08116 hypothetical protein; 97.0 0.0015 3.2E-08 66.4 7.4 100 130-244 116-220 (268)
183 PTZ00454 26S protease regulato 97.0 0.0047 1E-07 66.3 11.3 151 127-299 178-351 (398)
184 CHL00176 ftsH cell division pr 97.0 0.008 1.7E-07 68.5 13.3 148 128-297 216-386 (638)
185 PRK06090 DNA polymerase III su 97.0 0.031 6.8E-07 57.9 16.3 147 128-305 25-201 (319)
186 KOG2004 Mitochondrial ATP-depe 97.0 0.018 4E-07 63.6 14.8 140 124-275 434-596 (906)
187 PRK14721 flhF flagellar biosyn 97.0 0.037 8E-07 59.4 17.1 60 128-187 191-251 (420)
188 PRK14723 flhF flagellar biosyn 96.9 0.052 1.1E-06 62.3 19.1 88 128-217 185-273 (767)
189 TIGR02237 recomb_radB DNA repa 96.9 0.0066 1.4E-07 59.6 10.6 48 128-178 12-59 (209)
190 PRK12726 flagellar biosynthesi 96.9 0.062 1.3E-06 56.3 17.3 89 127-217 205-295 (407)
191 COG1222 RPT1 ATP-dependent 26S 96.9 0.027 5.8E-07 57.4 14.2 177 126-324 183-392 (406)
192 cd01123 Rad51_DMC1_radA Rad51_ 96.9 0.0082 1.8E-07 60.2 10.9 91 127-218 18-126 (235)
193 PF00448 SRP54: SRP54-type pro 96.9 0.0057 1.2E-07 58.9 9.2 87 128-216 1-92 (196)
194 PRK06871 DNA polymerase III su 96.9 0.023 5E-07 59.0 14.3 161 128-301 24-199 (325)
195 PRK14965 DNA polymerase III su 96.9 0.011 2.3E-07 67.2 12.9 155 129-306 39-222 (576)
196 PRK08769 DNA polymerase III su 96.8 0.018 3.9E-07 59.7 13.3 157 128-305 26-208 (319)
197 KOG2123 Uncharacterized conser 96.8 0.00013 2.7E-09 70.7 -2.3 100 500-602 18-123 (388)
198 PRK07261 topology modulation p 96.8 0.0033 7.1E-08 59.3 7.2 34 130-163 2-36 (171)
199 PRK04132 replication factor C 96.8 0.02 4.4E-07 66.7 14.9 152 136-303 574-729 (846)
200 PF05673 DUF815: Protein of un 96.8 0.037 8E-07 54.1 14.2 98 127-250 51-156 (249)
201 KOG2739 Leucine-rich acidic nu 96.8 0.00047 1E-08 66.8 1.3 103 498-603 40-150 (260)
202 PRK08058 DNA polymerase III su 96.8 0.02 4.4E-07 60.3 13.6 125 128-273 28-180 (329)
203 KOG2227 Pre-initiation complex 96.8 0.073 1.6E-06 56.2 16.9 176 124-300 171-363 (529)
204 PRK08181 transposase; Validate 96.7 0.0017 3.7E-08 65.5 4.8 98 129-244 107-208 (269)
205 TIGR00763 lon ATP-dependent pr 96.7 0.042 9E-07 65.1 16.9 136 128-275 347-505 (775)
206 TIGR01241 FtsH_fam ATP-depende 96.7 0.014 3E-07 65.5 12.1 155 129-305 89-267 (495)
207 PF13207 AAA_17: AAA domain; P 96.7 0.0016 3.4E-08 57.6 3.7 23 130-152 1-23 (121)
208 PRK10536 hypothetical protein; 96.7 0.0059 1.3E-07 60.2 7.8 34 129-162 75-108 (262)
209 KOG0991 Replication factor C, 96.7 0.0062 1.4E-07 57.7 7.5 80 124-219 44-125 (333)
210 PF13177 DNA_pol3_delta2: DNA 96.6 0.016 3.4E-07 54.0 10.3 118 128-263 19-162 (162)
211 TIGR02640 gas_vesic_GvpN gas v 96.6 0.021 4.6E-07 58.0 11.9 42 130-176 23-64 (262)
212 PRK10865 protein disaggregatio 96.6 0.16 3.4E-06 60.7 20.7 85 128-219 598-682 (857)
213 COG0593 DnaA ATPase involved i 96.6 0.018 4E-07 60.9 11.5 133 127-276 112-258 (408)
214 COG0542 clpA ATP-binding subun 96.6 0.025 5.5E-07 64.5 13.1 89 124-219 517-605 (786)
215 PRK07399 DNA polymerase III su 96.6 0.037 8E-07 57.6 13.5 172 128-305 26-221 (314)
216 PRK06964 DNA polymerase III su 96.6 0.048 1E-06 57.1 14.3 91 206-305 131-225 (342)
217 KOG0744 AAA+-type ATPase [Post 96.6 0.012 2.7E-07 58.7 9.2 29 127-155 176-204 (423)
218 TIGR03345 VI_ClpV1 type VI sec 96.6 0.013 2.8E-07 69.5 11.3 157 127-299 207-390 (852)
219 TIGR01425 SRP54_euk signal rec 96.6 0.13 2.7E-06 55.5 17.6 40 126-167 98-137 (429)
220 PRK00771 signal recognition pa 96.5 0.083 1.8E-06 57.3 16.1 86 127-216 94-184 (437)
221 PF08423 Rad51: Rad51; InterP 96.5 0.02 4.3E-07 57.8 10.8 89 128-217 38-143 (256)
222 TIGR02639 ClpA ATP-dependent C 96.5 0.017 3.6E-07 68.0 11.5 132 128-275 203-358 (731)
223 COG0466 Lon ATP-dependent Lon 96.5 0.065 1.4E-06 59.7 14.9 137 125-275 347-508 (782)
224 PF01695 IstB_IS21: IstB-like 96.4 0.0025 5.4E-08 60.3 3.6 74 128-219 47-120 (178)
225 PRK09183 transposase/IS protei 96.4 0.0022 4.8E-08 64.9 3.4 26 129-154 103-128 (259)
226 PRK06526 transposase; Provisio 96.4 0.003 6.5E-08 63.4 4.2 99 128-245 98-201 (254)
227 cd01393 recA_like RecA is a b 96.4 0.02 4.4E-07 56.9 10.2 50 127-176 18-71 (226)
228 TIGR02238 recomb_DMC1 meiotic 96.4 0.026 5.7E-07 58.6 11.1 91 127-218 95-202 (313)
229 PRK05541 adenylylsulfate kinas 96.4 0.015 3.2E-07 55.3 8.7 38 126-165 5-42 (176)
230 KOG0735 AAA+-type ATPase [Post 96.4 0.023 5.1E-07 62.7 10.7 157 129-306 432-617 (952)
231 PRK10787 DNA-binding ATP-depen 96.4 0.058 1.3E-06 63.4 14.8 135 127-275 348-506 (784)
232 TIGR00602 rad24 checkpoint pro 96.3 0.0085 1.8E-07 67.7 7.5 25 128-152 110-134 (637)
233 CHL00095 clpC Clp protease ATP 96.3 0.037 7.9E-07 66.0 13.2 134 128-274 200-353 (821)
234 PRK07993 DNA polymerase III su 96.3 0.084 1.8E-06 55.5 14.4 150 128-302 24-201 (334)
235 PRK11889 flhF flagellar biosyn 96.3 0.021 4.5E-07 59.9 9.4 89 127-217 240-330 (436)
236 PRK12377 putative replication 96.3 0.014 3.1E-07 58.1 8.0 73 129-218 102-174 (248)
237 PRK10867 signal recognition pa 96.3 0.24 5.3E-06 53.7 17.7 41 126-167 98-138 (433)
238 TIGR03345 VI_ClpV1 type VI sec 96.3 0.023 5.1E-07 67.4 11.0 88 125-219 593-680 (852)
239 TIGR02012 tigrfam_recA protein 96.3 0.016 3.4E-07 59.9 8.3 86 127-219 54-145 (321)
240 PRK09361 radB DNA repair and r 96.2 0.03 6.5E-07 55.6 10.2 45 128-175 23-67 (225)
241 PLN03187 meiotic recombination 96.2 0.035 7.5E-07 58.1 10.9 60 126-186 124-187 (344)
242 KOG0743 AAA+-type ATPase [Post 96.2 0.085 1.8E-06 55.7 13.6 152 129-312 236-417 (457)
243 KOG2739 Leucine-rich acidic nu 96.2 0.0016 3.4E-08 63.2 0.9 88 516-608 35-128 (260)
244 COG1618 Predicted nucleotide k 96.2 0.0061 1.3E-07 54.6 4.4 29 128-156 5-33 (179)
245 KOG1969 DNA replication checkp 96.2 0.011 2.3E-07 65.5 7.2 76 126-219 324-399 (877)
246 cd01120 RecA-like_NTPases RecA 96.2 0.029 6.3E-07 52.3 9.6 40 130-171 1-40 (165)
247 PRK08699 DNA polymerase III su 96.2 0.053 1.1E-06 56.7 12.0 87 206-301 112-202 (325)
248 CHL00095 clpC Clp protease ATP 96.2 0.12 2.7E-06 61.6 16.6 86 127-219 538-623 (821)
249 TIGR00959 ffh signal recogniti 96.1 0.13 2.9E-06 55.6 15.0 90 127-217 98-192 (428)
250 cd01133 F1-ATPase_beta F1 ATP 96.1 0.052 1.1E-06 54.5 10.9 90 128-218 69-174 (274)
251 COG1484 DnaC DNA replication p 96.1 0.021 4.5E-07 57.5 8.2 76 127-219 104-179 (254)
252 cd00983 recA RecA is a bacter 96.1 0.02 4.2E-07 59.2 8.1 85 128-219 55-145 (325)
253 PRK09354 recA recombinase A; P 96.1 0.023 5E-07 59.2 8.6 85 128-219 60-150 (349)
254 PRK06835 DNA replication prote 96.1 0.0094 2E-07 62.2 5.7 100 129-244 184-288 (329)
255 PRK08939 primosomal protein Dn 96.1 0.0087 1.9E-07 61.9 5.4 100 127-244 155-260 (306)
256 TIGR01243 CDC48 AAA family ATP 96.1 0.046 1E-06 64.5 12.2 150 128-299 487-657 (733)
257 PF13306 LRR_5: Leucine rich r 96.1 0.013 2.8E-07 52.3 5.9 108 492-605 3-112 (129)
258 cd02025 PanK Pantothenate kina 96.0 0.026 5.6E-07 55.6 8.3 41 130-170 1-41 (220)
259 TIGR02239 recomb_RAD51 DNA rep 96.0 0.047 1E-06 56.9 10.4 59 127-186 95-157 (316)
260 TIGR02639 ClpA ATP-dependent C 96.0 0.035 7.5E-07 65.4 10.5 83 127-219 483-565 (731)
261 KOG0733 Nuclear AAA ATPase (VC 96.0 0.072 1.6E-06 58.0 11.6 130 128-277 545-694 (802)
262 TIGR01069 mutS2 MutS2 family p 95.9 0.086 1.9E-06 61.8 13.5 182 126-325 320-521 (771)
263 PRK06921 hypothetical protein; 95.9 0.044 9.6E-07 55.6 9.8 71 127-216 116-186 (266)
264 PRK08533 flagellar accessory p 95.9 0.066 1.4E-06 53.2 10.7 48 128-179 24-71 (230)
265 cd01394 radB RadB. The archaea 95.9 0.049 1.1E-06 53.8 9.9 42 128-171 19-60 (218)
266 PRK04296 thymidine kinase; Pro 95.9 0.0083 1.8E-07 57.7 4.0 109 129-245 3-116 (190)
267 PLN03186 DNA repair protein RA 95.9 0.055 1.2E-06 56.8 10.3 60 126-186 121-184 (342)
268 PRK12724 flagellar biosynthesi 95.9 0.039 8.5E-07 58.7 9.2 85 127-215 222-307 (432)
269 PRK04301 radA DNA repair and r 95.8 0.073 1.6E-06 55.9 11.3 58 127-185 101-162 (317)
270 COG3640 CooC CO dehydrogenase 95.8 0.017 3.8E-07 55.2 5.8 43 130-173 2-44 (255)
271 PTZ00035 Rad51 protein; Provis 95.8 0.076 1.7E-06 55.8 11.3 90 127-217 117-223 (337)
272 COG2884 FtsE Predicted ATPase 95.8 0.036 7.9E-07 51.3 7.5 123 127-253 27-205 (223)
273 cd00561 CobA_CobO_BtuR ATP:cor 95.8 0.044 9.5E-07 50.3 8.1 115 129-245 3-138 (159)
274 PF07693 KAP_NTPase: KAP famil 95.8 0.41 8.8E-06 50.6 17.0 30 126-155 18-47 (325)
275 KOG3864 Uncharacterized conser 95.8 0.0018 4E-08 60.2 -0.9 68 672-744 121-189 (221)
276 PRK07952 DNA replication prote 95.7 0.042 9.2E-07 54.7 8.5 76 128-219 99-174 (244)
277 COG2255 RuvB Holliday junction 95.7 0.29 6.4E-06 48.5 13.8 69 238-307 155-225 (332)
278 TIGR02236 recomb_radA DNA repa 95.7 0.085 1.8E-06 55.3 11.2 58 127-185 94-155 (310)
279 KOG1532 GTPase XAB1, interacts 95.7 0.082 1.8E-06 51.6 9.8 61 126-186 17-86 (366)
280 PTZ00301 uridine kinase; Provi 95.7 0.027 5.8E-07 54.8 6.6 27 127-153 2-28 (210)
281 COG1419 FlhF Flagellar GTP-bin 95.7 0.056 1.2E-06 56.7 9.3 88 127-216 202-290 (407)
282 COG0563 Adk Adenylate kinase a 95.6 0.03 6.4E-07 52.9 6.7 23 130-152 2-24 (178)
283 PLN00020 ribulose bisphosphate 95.6 0.022 4.8E-07 58.9 6.0 29 126-154 146-174 (413)
284 PF13238 AAA_18: AAA domain; P 95.6 0.011 2.3E-07 52.8 3.4 22 131-152 1-22 (129)
285 PRK10733 hflB ATP-dependent me 95.6 0.062 1.3E-06 62.0 10.3 146 130-297 187-355 (644)
286 PF00485 PRK: Phosphoribulokin 95.6 0.012 2.6E-07 56.9 3.9 81 130-211 1-87 (194)
287 COG4088 Predicted nucleotide k 95.5 0.016 3.5E-07 54.0 4.2 27 129-155 2-28 (261)
288 TIGR00064 ftsY signal recognit 95.5 0.093 2E-06 53.4 10.2 58 126-185 70-128 (272)
289 COG1066 Sms Predicted ATP-depe 95.5 0.032 6.9E-07 58.0 6.7 86 128-219 93-180 (456)
290 KOG0733 Nuclear AAA ATPase (VC 95.5 0.15 3.2E-06 55.7 11.8 128 126-276 221-375 (802)
291 cd03115 SRP The signal recogni 95.5 0.065 1.4E-06 50.7 8.5 36 130-167 2-37 (173)
292 cd01124 KaiC KaiC is a circadi 95.5 0.083 1.8E-06 50.7 9.4 45 130-178 1-45 (187)
293 TIGR03877 thermo_KaiC_1 KaiC d 95.5 0.1 2.2E-06 52.3 10.2 49 127-179 20-68 (237)
294 cd01121 Sms Sms (bacterial rad 95.5 0.054 1.2E-06 57.7 8.6 86 128-218 82-169 (372)
295 TIGR01359 UMP_CMP_kin_fam UMP- 95.4 0.032 6.9E-07 53.4 6.3 23 130-152 1-23 (183)
296 cd03238 ABC_UvrA The excision 95.4 0.059 1.3E-06 50.8 7.9 119 128-259 21-161 (176)
297 PRK10865 protein disaggregatio 95.4 0.14 3.1E-06 61.1 12.9 135 127-275 198-354 (857)
298 COG0194 Gmk Guanylate kinase [ 95.4 0.049 1.1E-06 50.5 6.9 24 129-152 5-28 (191)
299 TIGR03346 chaperone_ClpB ATP-d 95.4 0.18 4E-06 60.4 13.8 133 127-275 193-349 (852)
300 PF00560 LRR_1: Leucine Rich R 95.4 0.007 1.5E-07 34.9 0.9 17 550-566 2-18 (22)
301 cd02019 NK Nucleoside/nucleoti 95.4 0.014 3E-07 45.4 2.9 23 130-152 1-23 (69)
302 cd01125 repA Hexameric Replica 95.4 0.07 1.5E-06 53.5 8.8 140 130-269 3-198 (239)
303 PF07728 AAA_5: AAA domain (dy 95.4 0.035 7.6E-07 50.3 6.1 43 131-178 2-44 (139)
304 KOG0730 AAA+-type ATPase [Post 95.4 0.053 1.1E-06 59.7 8.2 135 126-280 466-620 (693)
305 cd03283 ABC_MutS-like MutS-lik 95.4 0.092 2E-06 50.8 9.2 111 129-251 26-154 (199)
306 cd03247 ABCC_cytochrome_bd The 95.4 0.045 9.8E-07 52.1 7.0 25 128-152 28-52 (178)
307 cd01878 HflX HflX subfamily. 95.3 0.023 4.9E-07 55.5 5.0 58 89-152 8-65 (204)
308 TIGR03346 chaperone_ClpB ATP-d 95.3 0.03 6.6E-07 66.9 6.9 85 128-219 595-679 (852)
309 COG0541 Ffh Signal recognition 95.3 1.1 2.5E-05 47.4 17.3 59 126-186 98-157 (451)
310 COG0396 sufC Cysteine desulfur 95.3 0.053 1.2E-06 51.9 7.0 61 197-258 153-217 (251)
311 PRK05439 pantothenate kinase; 95.3 0.074 1.6E-06 54.7 8.7 81 126-208 84-166 (311)
312 KOG0731 AAA+-type ATPase conta 95.3 0.13 2.8E-06 58.5 11.2 152 129-301 345-520 (774)
313 PRK11034 clpA ATP-dependent Cl 95.3 0.046 9.9E-07 63.7 8.0 134 129-275 208-362 (758)
314 PRK14974 cell division protein 95.3 0.082 1.8E-06 55.3 9.0 90 126-218 138-233 (336)
315 TIGR01243 CDC48 AAA family ATP 95.3 0.12 2.6E-06 61.0 11.6 151 128-300 212-382 (733)
316 COG0470 HolB ATPase involved i 95.3 0.049 1.1E-06 57.6 7.7 117 129-261 25-167 (325)
317 PRK08233 hypothetical protein; 95.2 0.016 3.4E-07 55.5 3.5 26 128-153 3-28 (182)
318 TIGR00554 panK_bact pantothena 95.2 0.066 1.4E-06 54.7 8.1 44 127-170 61-104 (290)
319 PF08433 KTI12: Chromatin asso 95.2 0.038 8.1E-07 56.0 6.2 26 129-154 2-27 (270)
320 PF13481 AAA_25: AAA domain; P 95.2 0.11 2.4E-06 50.1 9.4 50 129-180 33-90 (193)
321 PRK09270 nucleoside triphospha 95.2 0.068 1.5E-06 53.2 7.8 29 127-155 32-60 (229)
322 PF13671 AAA_33: AAA domain; P 95.1 0.019 4.1E-07 52.4 3.5 23 130-152 1-23 (143)
323 COG0468 RecA RecA/RadA recombi 95.1 0.14 3E-06 51.8 9.8 89 127-218 59-152 (279)
324 PRK05480 uridine/cytidine kina 95.1 0.02 4.4E-07 56.1 4.0 27 126-152 4-30 (209)
325 COG0464 SpoVK ATPases of the A 95.1 0.21 4.6E-06 56.2 12.6 131 127-277 275-425 (494)
326 cd03223 ABCD_peroxisomal_ALDP 95.1 0.094 2E-06 49.2 8.3 115 128-248 27-151 (166)
327 PRK06067 flagellar accessory p 95.1 0.17 3.7E-06 50.6 10.6 86 127-217 24-130 (234)
328 COG2812 DnaX DNA polymerase II 95.1 0.25 5.4E-06 54.3 12.4 162 132-301 42-216 (515)
329 COG1428 Deoxynucleoside kinase 95.1 0.019 4.1E-07 54.3 3.3 28 127-154 3-30 (216)
330 cd03281 ABC_MSH5_euk MutS5 hom 95.0 0.026 5.7E-07 55.3 4.4 24 128-151 29-52 (213)
331 COG4608 AppF ABC-type oligopep 95.0 0.081 1.8E-06 52.3 7.6 123 127-253 38-178 (268)
332 PRK06696 uridine kinase; Valid 95.0 0.023 5E-07 56.3 4.0 28 127-154 21-48 (223)
333 PF07724 AAA_2: AAA domain (Cd 95.0 0.032 7E-07 52.4 4.7 43 128-171 3-45 (171)
334 PRK07132 DNA polymerase III su 95.0 0.49 1.1E-05 48.7 13.6 154 128-304 18-184 (299)
335 PRK06762 hypothetical protein; 95.0 0.023 4.9E-07 53.4 3.7 24 129-152 3-26 (166)
336 cd03228 ABCC_MRP_Like The MRP 95.0 0.091 2E-06 49.6 7.8 26 128-153 28-53 (171)
337 PRK04328 hypothetical protein; 94.9 0.13 2.8E-06 51.8 9.2 40 128-169 23-62 (249)
338 PF00154 RecA: recA bacterial 94.9 0.19 4.1E-06 51.9 10.3 85 128-219 53-143 (322)
339 TIGR01360 aden_kin_iso1 adenyl 94.9 0.023 5E-07 54.6 3.6 26 127-152 2-27 (188)
340 PF10443 RNA12: RNA12 protein; 94.9 1.3 2.8E-05 47.2 16.4 101 208-312 149-285 (431)
341 KOG1514 Origin recognition com 94.9 0.72 1.6E-05 51.5 15.0 147 126-276 420-590 (767)
342 PF00560 LRR_1: Leucine Rich R 94.9 0.012 2.5E-07 34.0 0.8 19 526-545 2-20 (22)
343 cd02027 APSK Adenosine 5'-phos 94.8 0.14 3.1E-06 46.9 8.5 24 130-153 1-24 (149)
344 COG0572 Udk Uridine kinase [Nu 94.8 0.029 6.4E-07 53.8 3.9 29 126-154 6-34 (218)
345 TIGR00708 cobA cob(I)alamin ad 94.8 0.21 4.5E-06 46.5 9.4 119 127-245 4-140 (173)
346 PRK00889 adenylylsulfate kinas 94.8 0.15 3.2E-06 48.4 8.8 28 127-154 3-30 (175)
347 PRK06547 hypothetical protein; 94.8 0.029 6.2E-07 52.8 3.8 27 126-152 13-39 (172)
348 TIGR03878 thermo_KaiC_2 KaiC d 94.8 0.21 4.5E-06 50.7 10.3 40 128-169 36-75 (259)
349 PTZ00088 adenylate kinase 1; P 94.8 0.056 1.2E-06 53.4 6.0 22 131-152 9-30 (229)
350 cd03246 ABCC_Protease_Secretio 94.8 0.11 2.3E-06 49.2 7.8 25 128-152 28-52 (173)
351 PF01583 APS_kinase: Adenylyls 94.8 0.04 8.7E-07 50.3 4.5 35 129-165 3-37 (156)
352 PF13306 LRR_5: Leucine rich r 94.8 0.059 1.3E-06 48.0 5.6 103 491-599 25-129 (129)
353 COG0003 ArsA Predicted ATPase 94.8 0.06 1.3E-06 55.7 6.3 49 128-178 2-50 (322)
354 PRK03839 putative kinase; Prov 94.7 0.027 5.8E-07 53.7 3.5 24 130-153 2-25 (180)
355 TIGR00235 udk uridine kinase. 94.7 0.028 6.1E-07 55.0 3.7 27 127-153 5-31 (207)
356 cd01131 PilT Pilus retraction 94.7 0.037 7.9E-07 53.7 4.4 110 129-248 2-112 (198)
357 COG1703 ArgK Putative periplas 94.7 0.044 9.6E-07 54.6 4.9 51 125-175 48-98 (323)
358 KOG2228 Origin recognition com 94.7 0.31 6.7E-06 49.5 10.7 147 127-275 48-219 (408)
359 PRK13768 GTPase; Provisional 94.7 0.21 4.6E-06 50.4 10.0 37 128-166 2-38 (253)
360 PF03205 MobB: Molybdopterin g 94.6 0.043 9.4E-07 49.6 4.4 39 129-168 1-39 (140)
361 TIGR03574 selen_PSTK L-seryl-t 94.6 0.14 3E-06 51.8 8.6 25 130-154 1-25 (249)
362 TIGR02858 spore_III_AA stage I 94.6 0.086 1.9E-06 53.4 6.9 113 127-249 110-233 (270)
363 cd00544 CobU Adenosylcobinamid 94.6 0.11 2.3E-06 48.7 7.0 46 130-181 1-46 (169)
364 cd02029 PRK_like Phosphoribulo 94.5 0.15 3.2E-06 50.8 8.1 76 130-207 1-84 (277)
365 PRK04040 adenylate kinase; Pro 94.5 0.034 7.3E-07 53.2 3.6 26 128-153 2-27 (188)
366 PRK12597 F0F1 ATP synthase sub 94.5 0.2 4.3E-06 54.5 9.8 90 128-218 143-248 (461)
367 cd03214 ABC_Iron-Siderophores_ 94.5 0.1 2.2E-06 49.7 6.9 117 128-249 25-162 (180)
368 COG1102 Cmk Cytidylate kinase 94.5 0.032 7E-07 50.1 3.0 47 130-189 2-48 (179)
369 PF00006 ATP-synt_ab: ATP synt 94.5 0.15 3.2E-06 49.7 7.9 85 129-217 16-115 (215)
370 cd03216 ABC_Carb_Monos_I This 94.5 0.056 1.2E-06 50.5 4.9 115 128-249 26-146 (163)
371 KOG0734 AAA+-type ATPase conta 94.5 0.1 2.2E-06 55.9 7.0 72 128-219 337-408 (752)
372 PRK07667 uridine kinase; Provi 94.4 0.041 9E-07 53.0 4.1 28 127-154 16-43 (193)
373 PRK00625 shikimate kinase; Pro 94.4 0.033 7.2E-07 52.4 3.3 24 130-153 2-25 (173)
374 KOG0739 AAA+-type ATPase [Post 94.4 0.36 7.7E-06 48.0 10.2 73 126-219 164-237 (439)
375 TIGR03305 alt_F1F0_F1_bet alte 94.4 0.24 5.2E-06 53.6 9.9 91 128-219 138-244 (449)
376 PRK06002 fliI flagellum-specif 94.4 0.16 3.5E-06 54.8 8.6 89 128-219 165-266 (450)
377 PRK10751 molybdopterin-guanine 94.4 0.061 1.3E-06 50.2 4.8 29 127-155 5-33 (173)
378 cd01135 V_A-ATPase_B V/A-type 94.4 0.37 7.9E-06 48.5 10.5 91 129-219 70-178 (276)
379 PF02374 ArsA_ATPase: Anion-tr 94.3 0.074 1.6E-06 55.2 5.9 44 129-174 2-45 (305)
380 PLN02924 thymidylate kinase 94.3 0.37 8E-06 47.4 10.4 54 127-181 15-68 (220)
381 CHL00206 ycf2 Ycf2; Provisiona 94.3 0.26 5.7E-06 61.4 11.0 27 127-153 1629-1655(2281)
382 PRK09519 recA DNA recombinatio 94.3 0.18 3.9E-06 58.3 9.2 86 127-219 59-150 (790)
383 PHA00729 NTP-binding motif con 94.3 0.05 1.1E-06 52.9 4.1 25 128-152 17-41 (226)
384 KOG3347 Predicted nucleotide k 94.3 0.042 9E-07 48.5 3.2 42 128-176 7-48 (176)
385 PRK13949 shikimate kinase; Pro 94.3 0.082 1.8E-06 49.7 5.5 25 129-153 2-26 (169)
386 PRK15453 phosphoribulokinase; 94.2 0.25 5.4E-06 49.7 9.0 78 126-205 3-88 (290)
387 KOG0736 Peroxisome assembly fa 94.2 0.15 3.2E-06 57.2 8.0 72 128-219 705-776 (953)
388 PF00910 RNA_helicase: RNA hel 94.2 0.036 7.9E-07 47.5 2.8 24 131-154 1-24 (107)
389 smart00763 AAA_PrkA PrkA AAA d 94.2 0.16 3.4E-06 53.1 7.8 37 127-163 77-118 (361)
390 PRK11823 DNA repair protein Ra 94.2 0.11 2.4E-06 57.1 7.1 86 128-218 80-167 (446)
391 PRK13234 nifH nitrogenase redu 94.2 0.065 1.4E-06 55.5 5.1 43 127-171 3-45 (295)
392 cd02024 NRK1 Nicotinamide ribo 94.2 0.036 7.8E-07 52.7 2.9 23 130-152 1-23 (187)
393 TIGR02322 phosphon_PhnN phosph 94.1 0.043 9.4E-07 52.3 3.4 25 129-153 2-26 (179)
394 PF02562 PhoH: PhoH-like prote 94.1 0.06 1.3E-06 51.7 4.3 38 128-165 19-56 (205)
395 KOG0737 AAA+-type ATPase [Post 94.1 0.44 9.5E-06 49.1 10.5 27 127-153 126-152 (386)
396 COG2607 Predicted ATPase (AAA+ 94.1 0.14 3.1E-06 49.3 6.6 92 127-244 84-182 (287)
397 PRK11034 clpA ATP-dependent Cl 94.1 0.066 1.4E-06 62.4 5.3 83 127-219 487-569 (758)
398 cd02028 UMPK_like Uridine mono 94.1 0.056 1.2E-06 51.4 4.0 24 130-153 1-24 (179)
399 PF13245 AAA_19: Part of AAA d 94.0 0.12 2.6E-06 41.0 5.2 24 128-151 10-33 (76)
400 PF03308 ArgK: ArgK protein; 94.0 0.077 1.7E-06 52.2 4.9 46 126-171 27-72 (266)
401 PRK00409 recombination and DNA 94.0 0.19 4E-06 59.3 9.0 180 126-325 325-526 (782)
402 PRK06217 hypothetical protein; 94.0 0.042 9.2E-07 52.5 3.1 34 130-164 3-38 (183)
403 cd02023 UMPK Uridine monophosp 94.0 0.037 8.1E-07 53.7 2.8 23 130-152 1-23 (198)
404 COG0488 Uup ATPase components 94.0 0.42 9.1E-06 53.3 11.2 130 129-261 349-511 (530)
405 PRK05986 cob(I)alamin adenolsy 94.0 0.28 6.1E-06 46.4 8.4 116 128-245 22-158 (191)
406 KOG0473 Leucine-rich repeat pr 94.0 0.0059 1.3E-07 57.9 -2.8 90 492-582 33-122 (326)
407 PRK00131 aroK shikimate kinase 93.9 0.052 1.1E-06 51.4 3.6 25 128-152 4-28 (175)
408 PF12061 DUF3542: Protein of u 93.9 0.2 4.4E-06 49.8 7.6 61 9-70 311-372 (402)
409 PRK03846 adenylylsulfate kinas 93.9 0.093 2E-06 50.9 5.4 29 126-154 22-50 (198)
410 cd00227 CPT Chloramphenicol (C 93.9 0.049 1.1E-06 51.7 3.4 24 129-152 3-26 (175)
411 cd02021 GntK Gluconate kinase 93.9 0.042 9E-07 50.6 2.8 23 130-152 1-23 (150)
412 cd02020 CMPK Cytidine monophos 93.9 0.044 9.6E-07 50.2 3.0 23 130-152 1-23 (147)
413 COG1763 MobB Molybdopterin-gua 93.9 0.054 1.2E-06 49.7 3.4 30 128-157 2-31 (161)
414 COG2019 AdkA Archaeal adenylat 93.9 0.063 1.4E-06 48.5 3.7 47 128-186 4-50 (189)
415 PRK09280 F0F1 ATP synthase sub 93.9 0.36 7.8E-06 52.4 10.1 90 128-218 144-249 (463)
416 PF07726 AAA_3: ATPase family 93.8 0.042 9.1E-07 47.8 2.4 23 131-153 2-24 (131)
417 TIGR02655 circ_KaiC circadian 93.8 0.3 6.6E-06 54.5 9.9 85 127-216 262-362 (484)
418 TIGR00416 sms DNA repair prote 93.8 0.2 4.3E-06 55.1 8.2 87 127-218 93-181 (454)
419 PRK08927 fliI flagellum-specif 93.8 0.33 7.2E-06 52.4 9.6 91 125-219 155-260 (442)
420 PRK00698 tmk thymidylate kinas 93.8 0.46 1E-05 46.3 10.1 27 129-155 4-30 (205)
421 COG4240 Predicted kinase [Gene 93.8 0.25 5.5E-06 47.0 7.5 80 127-207 49-133 (300)
422 COG1936 Predicted nucleotide k 93.8 0.051 1.1E-06 49.6 2.9 20 130-149 2-21 (180)
423 PF13504 LRR_7: Leucine rich r 93.8 0.041 8.9E-07 29.4 1.4 16 549-564 2-17 (17)
424 PRK08972 fliI flagellum-specif 93.7 0.29 6.3E-06 52.6 8.9 88 128-219 162-264 (444)
425 cd01122 GP4d_helicase GP4d_hel 93.7 0.43 9.3E-06 48.9 10.0 53 127-182 29-81 (271)
426 cd01136 ATPase_flagellum-secre 93.7 0.34 7.4E-06 50.3 9.1 87 128-218 69-170 (326)
427 PRK14529 adenylate kinase; Pro 93.6 0.26 5.5E-06 48.3 7.8 81 131-216 3-85 (223)
428 PRK08149 ATP synthase SpaL; Va 93.6 0.34 7.3E-06 52.2 9.3 89 127-219 150-253 (428)
429 TIGR01287 nifH nitrogenase iro 93.6 0.11 2.4E-06 53.4 5.5 41 129-171 1-41 (275)
430 PRK13236 nitrogenase reductase 93.6 0.093 2E-06 54.4 4.9 31 125-155 3-33 (296)
431 PRK10416 signal recognition pa 93.6 0.39 8.4E-06 50.1 9.4 40 126-167 112-151 (318)
432 PRK09099 type III secretion sy 93.5 0.27 5.8E-06 53.3 8.4 91 126-219 161-265 (441)
433 PRK13947 shikimate kinase; Pro 93.5 0.062 1.3E-06 50.7 3.2 24 130-153 3-26 (171)
434 KOG2859 DNA repair protein, me 93.5 0.43 9.2E-06 45.1 8.4 59 127-185 37-99 (293)
435 cd01672 TMPK Thymidine monopho 93.5 0.21 4.5E-06 48.4 7.0 26 129-154 1-26 (200)
436 PRK12339 2-phosphoglycerate ki 93.5 0.073 1.6E-06 51.2 3.6 25 128-152 3-27 (197)
437 PRK06731 flhF flagellar biosyn 93.4 0.41 8.8E-06 48.5 9.1 89 127-217 74-164 (270)
438 PF00625 Guanylate_kin: Guanyl 93.4 0.098 2.1E-06 50.0 4.5 37 128-166 2-38 (183)
439 PRK05800 cobU adenosylcobinami 93.4 0.18 4E-06 47.2 6.2 48 130-183 3-50 (170)
440 COG0467 RAD55 RecA-superfamily 93.4 0.12 2.5E-06 52.7 5.3 54 127-185 22-75 (260)
441 TIGR03263 guanyl_kin guanylate 93.4 0.058 1.3E-06 51.4 2.9 24 129-152 2-25 (180)
442 PF03266 NTPase_1: NTPase; In 93.4 0.073 1.6E-06 49.8 3.4 23 131-153 2-24 (168)
443 cd03282 ABC_MSH4_euk MutS4 hom 93.4 0.038 8.3E-07 53.6 1.6 117 127-252 28-158 (204)
444 PRK06851 hypothetical protein; 93.4 0.7 1.5E-05 48.8 10.9 44 125-169 211-254 (367)
445 PF12775 AAA_7: P-loop contain 93.3 0.044 9.6E-07 55.8 2.0 79 129-219 34-112 (272)
446 PRK05922 type III secretion sy 93.3 0.47 1E-05 51.2 9.7 88 128-219 157-259 (434)
447 TIGR01041 ATP_syn_B_arch ATP s 93.3 0.37 8E-06 52.5 9.0 90 129-218 142-249 (458)
448 PRK04220 2-phosphoglycerate ki 93.3 0.21 4.6E-06 50.9 6.8 25 128-152 92-116 (301)
449 TIGR03498 FliI_clade3 flagella 93.3 0.28 6.1E-06 52.8 8.1 89 128-219 140-242 (418)
450 PRK14530 adenylate kinase; Pro 93.3 0.074 1.6E-06 52.4 3.5 24 129-152 4-27 (215)
451 cd02117 NifH_like This family 93.3 0.1 2.2E-06 51.3 4.4 27 129-155 1-27 (212)
452 KOG0729 26S proteasome regulat 93.2 0.24 5.2E-06 48.2 6.6 75 125-219 208-282 (435)
453 PRK13975 thymidylate kinase; P 93.2 0.08 1.7E-06 51.3 3.6 25 129-153 3-27 (196)
454 PRK10875 recD exonuclease V su 93.2 0.15 3.3E-06 57.9 6.3 55 127-181 166-221 (615)
455 TIGR00176 mobB molybdopterin-g 93.2 0.095 2.1E-06 48.3 3.8 33 130-163 1-33 (155)
456 KOG3864 Uncharacterized conser 93.2 0.051 1.1E-06 50.8 2.0 92 677-780 102-193 (221)
457 cd00464 SK Shikimate kinase (S 93.2 0.078 1.7E-06 49.0 3.3 22 131-152 2-23 (154)
458 cd03116 MobB Molybdenum is an 93.2 0.13 2.8E-06 47.6 4.6 27 129-155 2-28 (159)
459 PF10236 DAP3: Mitochondrial r 93.1 3.2 7E-05 43.2 15.5 47 256-302 258-306 (309)
460 PRK12678 transcription termina 93.1 0.51 1.1E-05 52.0 9.6 90 129-219 417-515 (672)
461 PF08477 Miro: Miro-like prote 93.1 0.081 1.8E-06 46.3 3.2 23 131-153 2-24 (119)
462 PF00142 Fer4_NifH: 4Fe-4S iro 93.1 0.2 4.4E-06 49.5 6.0 41 129-171 1-41 (273)
463 TIGR01040 V-ATPase_V1_B V-type 93.1 0.49 1.1E-05 51.1 9.3 90 129-218 142-258 (466)
464 PF03029 ATP_bind_1: Conserved 93.0 0.084 1.8E-06 52.6 3.5 34 133-168 1-34 (238)
465 TIGR01313 therm_gnt_kin carboh 93.0 0.066 1.4E-06 50.1 2.6 22 131-152 1-22 (163)
466 TIGR00073 hypB hydrogenase acc 93.0 0.094 2E-06 51.3 3.8 27 126-152 20-46 (207)
467 PRK00300 gmk guanylate kinase; 93.0 0.08 1.7E-06 51.7 3.3 25 128-152 5-29 (205)
468 cd00071 GMPK Guanosine monopho 93.0 0.07 1.5E-06 48.1 2.6 23 130-152 1-23 (137)
469 TIGR00041 DTMP_kinase thymidyl 93.0 0.28 6.1E-06 47.4 7.0 27 129-155 4-30 (195)
470 KOG0728 26S proteasome regulat 93.0 0.78 1.7E-05 44.4 9.4 131 126-276 179-332 (404)
471 COG1124 DppF ABC-type dipeptid 92.9 0.082 1.8E-06 51.2 3.0 24 129-152 34-57 (252)
472 cd03243 ABC_MutS_homologs The 92.9 0.079 1.7E-06 51.6 3.1 23 129-151 30-52 (202)
473 PRK09435 membrane ATPase/prote 92.9 0.26 5.6E-06 51.4 7.0 30 126-155 54-83 (332)
474 PF06745 KaiC: KaiC; InterPro 92.9 0.24 5.2E-06 49.2 6.6 48 128-178 19-66 (226)
475 PRK05057 aroK shikimate kinase 92.9 0.095 2.1E-06 49.4 3.5 25 128-152 4-28 (172)
476 cd00820 PEPCK_HprK Phosphoenol 92.9 0.092 2E-06 44.5 3.0 22 128-149 15-36 (107)
477 PRK06936 type III secretion sy 92.9 0.46 1E-05 51.2 9.0 89 126-218 160-263 (439)
478 cd01132 F1_ATPase_alpha F1 ATP 92.9 0.46 1E-05 47.8 8.4 87 129-219 70-173 (274)
479 TIGR02655 circ_KaiC circadian 92.9 0.55 1.2E-05 52.4 10.0 49 127-178 20-68 (484)
480 TIGR01039 atpD ATP synthase, F 92.9 0.63 1.4E-05 50.4 9.9 91 128-219 143-249 (461)
481 PRK05917 DNA polymerase III su 92.9 1.2 2.5E-05 45.5 11.4 118 128-262 19-154 (290)
482 cd02040 NifH NifH gene encodes 92.9 0.18 4E-06 51.6 5.9 43 129-173 2-44 (270)
483 PTZ00185 ATPase alpha subunit; 92.9 0.82 1.8E-05 49.9 10.7 91 129-219 190-301 (574)
484 PRK10078 ribose 1,5-bisphospho 92.9 0.08 1.7E-06 50.8 3.0 24 129-152 3-26 (186)
485 PRK07594 type III secretion sy 92.9 0.31 6.7E-06 52.6 7.6 89 126-218 153-256 (433)
486 PRK07196 fliI flagellum-specif 92.8 0.44 9.6E-06 51.5 8.7 89 127-219 154-257 (434)
487 TIGR00750 lao LAO/AO transport 92.8 0.27 5.9E-06 51.1 7.0 30 126-155 32-61 (300)
488 PRK07721 fliI flagellum-specif 92.8 0.47 1E-05 51.6 8.9 89 127-218 157-259 (438)
489 cd01983 Fer4_NifH The Fer4_Nif 92.8 0.11 2.4E-06 43.4 3.4 25 130-154 1-25 (99)
490 PRK14527 adenylate kinase; Pro 92.7 0.1 2.3E-06 50.2 3.6 27 127-153 5-31 (191)
491 PRK13946 shikimate kinase; Pro 92.7 0.096 2.1E-06 50.1 3.3 25 128-152 10-34 (184)
492 PRK14493 putative bifunctional 92.7 0.14 2.9E-06 52.1 4.4 28 129-156 2-29 (274)
493 TIGR00150 HI0065_YjeE ATPase, 92.7 0.11 2.4E-06 46.1 3.3 27 128-154 22-48 (133)
494 PRK13230 nitrogenase reductase 92.7 0.19 4.2E-06 51.7 5.7 39 129-169 2-40 (279)
495 PRK13976 thymidylate kinase; P 92.6 0.8 1.7E-05 44.6 9.6 26 130-155 2-27 (209)
496 KOG3354 Gluconate kinase [Carb 92.6 0.6 1.3E-05 41.7 7.6 25 129-153 13-37 (191)
497 KOG2170 ATPase of the AAA+ sup 92.6 0.29 6.4E-06 48.8 6.4 80 126-219 108-190 (344)
498 PRK13695 putative NTPase; Prov 92.6 0.17 3.7E-06 47.9 4.8 34 130-164 2-35 (174)
499 cd03284 ABC_MutS1 MutS1 homolo 92.6 0.14 3E-06 50.3 4.2 22 129-150 31-52 (216)
500 COG0283 Cmk Cytidylate kinase 92.6 0.11 2.4E-06 49.4 3.3 25 129-153 5-29 (222)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-81 Score=718.08 Aligned_cols=735 Identities=26% Similarity=0.384 Sum_probs=541.5
Q ss_pred cchhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---------
Q 039180 5 SYWHNSGANFDNLKAELDRLKDERESIQRRVSEAERKSEKIEEMVEKWLVNANKRIEQAAKFIQDEEAAND--------- 75 (790)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~~~~w~~~~~~~~~~~ed~~d~~~~~~~--------- 75 (790)
.++..+...+.+.++.+..|++.|..++.+++||++++.. ...+..|...+++++|++||.++.+.....
T Consensus 14 ~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~-~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~ 92 (889)
T KOG4658|consen 14 QLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDD-LERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLS 92 (889)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 4566788889999999999999999999999999999875 788999999999999999999998743311
Q ss_pred -------CccccCCCCChHHHHHHhHHHHHHHHHHHHHHHhhcccCCc-----cc-----------cc---c--e-----
Q 039180 76 -------GRCLMGLFPDWFARYQHGRKAETEKEALSKLREEAERFDNR-----IS-----------YP---T--I----- 122 (790)
Q Consensus 76 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-----------~p---~--~----- 122 (790)
+.|+. ..+++.+..+..+..++.++.+..+.|+.. ++ .| . +
T Consensus 93 ~~~~~~~~~c~~------~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~VG~e~~ 166 (889)
T KOG4658|consen 93 TRSVERQRLCLC------GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESDVGLETM 166 (889)
T ss_pred hhHHHHHHHhhh------hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCccccccHHHH
Confidence 11111 344444445555555554444444333310 11 01 1 1
Q ss_pred -e------cCCceeEEEEEcCCCCcHhHHHHHHHHHhh-hccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchh---H
Q 039180 123 -R------EDIWLNIIGVYGMGGIGKTTLVKEFARRAI-EDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEE---A 191 (790)
Q Consensus 123 -~------~~~~~~vv~I~G~~G~GKTtLa~~~~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~ 191 (790)
+ -+++..+|+|+||||+||||||++++++.. ++.+||.++||+||+.++..+++++|++.++...... .
T Consensus 167 ~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~ 246 (889)
T KOG4658|consen 167 LEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKE 246 (889)
T ss_pred HHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhh
Confidence 0 233349999999999999999999999988 8999999999999999999999999999998744332 2
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEeCCCCccCccccCccCCCCCCCcEEEEEeCChhHHhh-hCCCceEEccCCCHHHHHHH
Q 039180 192 EFRRASRMFERLKNEKKILLILDNTWKSLDLGTIGIPFGVEHRGCKLLFTTRDLDVLIR-MGSEKNFSIGILNEQEAWRL 270 (790)
Q Consensus 192 ~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtR~~~v~~~-~~~~~~~~l~~L~~~~~~~L 270 (790)
..+....+.+.+. +|||+|||||||+..+|+.++.++|....||+|++|||++.|+.. +++...+++.+|+.+|||.|
T Consensus 247 ~~~~~~~i~~~L~-~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~L 325 (889)
T KOG4658|consen 247 EDELASKLLNLLE-GKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDL 325 (889)
T ss_pred HHHHHHHHHHHhc-cCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHH
Confidence 2345566666666 699999999999999999999999999899999999999999999 88889999999999999999
Q ss_pred HHHHhCCC--CCCcchHHHHHHHHHHhcCCcHHHHHHHHHHhcC-ChhHHHHHHHHhcCCCCCCcCCCCchhhhhhHHHH
Q 039180 271 FKIIAGAY--VENRELKSTATSVAKACRGLPIALTIVVKALRNK-ELPEWKNALQELQMPSETSFDEGVPAEAYSTIELS 347 (790)
Q Consensus 271 f~~~~~~~--~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~~l~~s 347 (790)
|++.++.. ...+.++++|++++++|+|+|||+.++|+.|+.+ +..+|+++.+.+.+....+. .++...++.++.+|
T Consensus 326 F~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~-~~~~~~i~~iLklS 404 (889)
T KOG4658|consen 326 FQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADF-SGMEESILPILKLS 404 (889)
T ss_pred HHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCC-CchhhhhHHhhhcc
Confidence 99999844 2334589999999999999999999999999988 78899999999887644433 33444559999999
Q ss_pred HHHHhHHhHHHHhhhcccC---CCCHHHHHHHHhhcCccch----HHHHHHHHHHHHHHHhccceeeeC---CcCeEEeC
Q 039180 348 YKYLGKQLKETILLCSLIA---PTSIMDLINYTMGFGVLKL----EEAHNKLHAWVRQLRDSCLLLVDG---SSKFFSMH 417 (790)
Q Consensus 348 y~~L~~~~k~~f~~~s~fp---~~~~~~Li~~w~~eg~~~~----~~~~~~~~~~~~~L~~~sll~~~~---~~~~~~~h 417 (790)
|+.||+++|.||+|||+|| .|+++.|+.+|+||||+.. +.+++.+++++.+|++++|+...+ ...+|+||
T Consensus 405 yd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmH 484 (889)
T KOG4658|consen 405 YDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMH 484 (889)
T ss_pred HhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEee
Confidence 9999999999999999999 7899999999999999944 446788999999999999999875 56899999
Q ss_pred hhhHHHHHHHhh-----hcccceEecCCccccCCCcccccceeEEEeecccccCCCCccCccccceeecccCCC-CCCCC
Q 039180 418 DVLRDVAISIAC-----RDMNAFVVRNKNMWEWPNPDALKKYLAISLINSRINDIPEGLESAQLEFLLMIPNNS-FLGPN 491 (790)
Q Consensus 418 ~li~~~~~~~~~-----~e~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~-~~~~~ 491 (790)
|++|++|.++++ .++. ....+.+..+.+....+..+|++++.+|.+..++....++++++|+..++.. .. .
T Consensus 485 DvvRe~al~ias~~~~~~e~~-iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~--~ 561 (889)
T KOG4658|consen 485 DVVREMALWIASDFGKQEENQ-IVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLL--E 561 (889)
T ss_pred HHHHHHHHHHhccccccccce-EEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhh--h
Confidence 999999999998 5652 2222224455677788899999999999999999999999999999999864 44 6
Q ss_pred CChhhhccCCceEEEEecCc-cccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCC-CCcccchhhhc
Q 039180 492 IPENFFKGVKKLRVVALVKM-LLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRS-DIVQLPKALGE 569 (790)
Q Consensus 492 lp~~~~~~l~~L~~L~L~~~-~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~-~l~~lp~~l~~ 569 (790)
++..+|..++.|++|||++| .+.++|+++++|.+||||+|+++.+..+ |..+++|.+|.+|++..+ .+..+|..+..
T Consensus 562 is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~L-P~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~ 640 (889)
T KOG4658|consen 562 ISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHL-PSGLGNLKKLIYLNLEVTGRLESIPGILLE 640 (889)
T ss_pred cCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcccc-chHHHHHHhhheeccccccccccccchhhh
Confidence 88899999999999999987 5679999999999999999999999998 999999999999999998 44566666677
Q ss_pred ccccceecCCccc-cccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCc----EEEEEecCC-
Q 039180 570 LTKLRLSDLTDCF-HLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLT----TLEIDVKND- 643 (790)
Q Consensus 570 l~~L~~L~l~~~~-~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~----~L~l~~~~~- 643 (790)
|.+|++|.+.... ..+..-...+.++.+|+.|....... .....+..+++|. .+.+.++..
T Consensus 641 L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-------------~~~e~l~~~~~L~~~~~~l~~~~~~~~ 707 (889)
T KOG4658|consen 641 LQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-------------LLLEDLLGMTRLRSLLQSLSIEGCSKR 707 (889)
T ss_pred cccccEEEeeccccccchhhHHhhhcccchhhheeecchh-------------HhHhhhhhhHHHHHHhHhhhhcccccc
Confidence 9999999987642 11111122234555555555433321 1111222222222 222222221
Q ss_pred CCCCccccccccceeEEEecCCCCCCC------ccc-cCCccCeeeccce-ecceecccCCCccccccCCCccEEeeccC
Q 039180 644 SILPESFLTQKLERFKISIGNESFMPS------QSV-ELPNLEALELCAI-NVDKIWHYNLLPFMLSRFQSLTRLIVRSC 715 (790)
Q Consensus 644 ~~~~~~~~~~~L~~L~l~~~~~~~~~~------~~~-~l~~L~~L~l~~~-~l~~l~~~~~~~~~~~~l~~L~~L~L~~~ 715 (790)
...+....+.+|+.|.+..+....... ... .|+++..+.+.+| .+.+ +.|....|+|+.|.+..|
T Consensus 708 ~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~-------l~~~~f~~~L~~l~l~~~ 780 (889)
T KOG4658|consen 708 TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRD-------LTWLLFAPHLTSLSLVSC 780 (889)
T ss_pred eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccc-------cchhhccCcccEEEEecc
Confidence 112222235566666666655542211 111 1445555555555 2222 333445577777777777
Q ss_pred CcccccchhHHHhccc----------cccEE-eeccCchhhhHhhcCCCCCCCCcccCCccceeeccccccccccChh
Q 039180 716 PKLKYIFSASMIQNFE----------LLREL-SIADCRGLREIISKDRADHVTPCFVFPQMTTLRLEILPELKCYTLE 782 (790)
Q Consensus 716 ~~l~~~~~~~~~~~l~----------~L~~L-~l~~c~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~l~~~ 782 (790)
+.+.++.+ ....+. +++.+ .+.+.+.+.++.... ..+|+|+.+.++.||++.++|..
T Consensus 781 ~~~e~~i~--~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~--------l~~~~l~~~~ve~~p~l~~~P~~ 848 (889)
T KOG4658|consen 781 RLLEDIIP--KLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLP--------LSFLKLEELIVEECPKLGKLPLL 848 (889)
T ss_pred cccccCCC--HHHHhhhcccEEecccccccceeeecCCCCceeEecc--------cCccchhheehhcCcccccCccc
Confidence 76666532 222222 23333 233323333322222 23566677777777777766643
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.9e-59 Score=565.03 Aligned_cols=597 Identities=22% Similarity=0.301 Sum_probs=387.9
Q ss_pred CCceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEe---CCCC-----------C-HHHHHHHHHHHhCCCCch
Q 039180 125 DIWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEV---TQSP-----------D-IKQIQQEIAEKLGLELSE 189 (790)
Q Consensus 125 ~~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~---~~~~-----------~-~~~~~~~i~~~l~~~~~~ 189 (790)
.+++++|+|+||||+||||||+++|++.. .+|+..+|+.. +... + ...+++.++.++......
T Consensus 204 ~~~~~vvgI~G~gGiGKTTLA~~l~~~l~--~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~ 281 (1153)
T PLN03210 204 SEEVRMVGIWGSSGIGKTTIARALFSRLS--RQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDI 281 (1153)
T ss_pred cCceEEEEEEcCCCCchHHHHHHHHHHHh--hcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCc
Confidence 35689999999999999999999999875 45888877642 1110 1 122334444443211110
Q ss_pred hHHHHHHHHHHHHHHcCCcEEEEEeCCCCccCccccCccCCCCCCCcEEEEEeCChhHHhhhCCCceEEccCCCHHHHHH
Q 039180 190 EAEFRRASRMFERLKNEKKILLILDNTWKSLDLGTIGIPFGVEHRGCKLLFTTRDLDVLIRMGSEKNFSIGILNEQEAWR 269 (790)
Q Consensus 190 ~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtR~~~v~~~~~~~~~~~l~~L~~~~~~~ 269 (790)
. ......+.+.+. ++|+||||||||+..+|+.+.....+.++||+||||||+..++..++....|+++.++.++||+
T Consensus 282 ~--~~~~~~~~~~L~-~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~ 358 (1153)
T PLN03210 282 K--IYHLGAMEERLK-HRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALE 358 (1153)
T ss_pred c--cCCHHHHHHHHh-CCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHH
Confidence 0 001133445555 5899999999999999998877666678899999999999999888777899999999999999
Q ss_pred HHHHHhCCCC-CCcchHHHHHHHHHHhcCCcHHHHHHHHHHhcCChhHHHHHHHHhcCCCCCCcCCCCchhhhhhHHHHH
Q 039180 270 LFKIIAGAYV-ENRELKSTATSVAKACRGLPIALTIVVKALRNKELPEWKNALQELQMPSETSFDEGVPAEAYSTIELSY 348 (790)
Q Consensus 270 Lf~~~~~~~~-~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~~l~~sy 348 (790)
||.++|+... ++..+.+++++|+++|+|+|||++++|++|++++..+|++++.++.... ... +..+|++||
T Consensus 359 LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~----~~~----I~~~L~~SY 430 (1153)
T PLN03210 359 MFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGL----DGK----IEKTLRVSY 430 (1153)
T ss_pred HHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCc----cHH----HHHHHHHhh
Confidence 9999998543 4556789999999999999999999999999999999999999986532 223 499999999
Q ss_pred HHHhH-HhHHHHhhhcccC-CCCHHHHHHHHhhcCccchHHHHHHHHHHHHHHHhccceeeeCCcCeEEeChhhHHHHHH
Q 039180 349 KYLGK-QLKETILLCSLIA-PTSIMDLINYTMGFGVLKLEEAHNKLHAWVRQLRDSCLLLVDGSSKFFSMHDVLRDVAIS 426 (790)
Q Consensus 349 ~~L~~-~~k~~f~~~s~fp-~~~~~~Li~~w~~eg~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~h~li~~~~~~ 426 (790)
+.|++ ..|.||+++|.|+ +.... .+..|.+.+... .+..++.|+++||++.. ...++|||++|+++++
T Consensus 431 d~L~~~~~k~~Fl~ia~ff~~~~~~-~v~~~l~~~~~~-------~~~~l~~L~~ksLi~~~--~~~~~MHdLl~~~~r~ 500 (1153)
T PLN03210 431 DGLNNKKDKAIFRHIACLFNGEKVN-DIKLLLANSDLD-------VNIGLKNLVDKSLIHVR--EDIVEMHSLLQEMGKE 500 (1153)
T ss_pred hccCccchhhhhheehhhcCCCCHH-HHHHHHHhcCCC-------chhChHHHHhcCCEEEc--CCeEEhhhHHHHHHHH
Confidence 99975 5999999999998 55544 466677665432 22358889999999876 3579999999999999
Q ss_pred Hhhhccc-----ceEecCCcccc-CCCcccccceeEEEeeccccc---------------------------------CC
Q 039180 427 IACRDMN-----AFVVRNKNMWE-WPNPDALKKYLAISLINSRIN---------------------------------DI 467 (790)
Q Consensus 427 ~~~~e~~-----~~~~~~~~~~~-~~~~~~~~~l~~l~l~~~~~~---------------------------------~l 467 (790)
++.++.. .+......+.. .........++.+++.-+.+. .+
T Consensus 501 i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~l 580 (1153)
T PLN03210 501 IVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHL 580 (1153)
T ss_pred HHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeec
Confidence 9876531 00000000000 001111233444443322221 12
Q ss_pred CCcc-CccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCCChhhhhccccceeeccCcc-ccccchhhhh
Q 039180 468 PEGL-ESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSI-LRDIDIAIIG 545 (790)
Q Consensus 468 ~~~~-~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~-l~~l~p~~i~ 545 (790)
|..+ ..+....++...++... .+|..+ .+.+|+.|+++++.+..+|..+..+++|++|+|++|. +..+ | .++
T Consensus 581 p~~~~~lp~~Lr~L~~~~~~l~--~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~i-p-~ls 654 (1153)
T PLN03210 581 PEGFDYLPPKLRLLRWDKYPLR--CMPSNF--RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEI-P-DLS 654 (1153)
T ss_pred CcchhhcCcccEEEEecCCCCC--CCCCcC--CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcC-C-ccc
Confidence 3322 12221222222333333 466544 4567777777777777777777778888888887765 4443 4 467
Q ss_pred ccCcccEEeccCC-CCcccchhhhcccccceecCCccccccccCchhhccccccceEecccCCccchhhccccccccccc
Q 039180 546 KLKNLKILSFVRS-DIVQLPKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSL 624 (790)
Q Consensus 546 ~l~~L~~L~L~~~-~l~~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 624 (790)
.+++|++|+|++| .+..+|..++++++|++|++++|..++.+|.. + ++++|+.|++++|......+
T Consensus 655 ~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~~p----------- 721 (1153)
T PLN03210 655 MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKSFP----------- 721 (1153)
T ss_pred cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCccccc-----------
Confidence 7788888888877 56677887888888888888887777777764 2 67788888887775432211
Q ss_pred ccccCCCCCcEEEEEecCCCCCCcccccc-------------------------------ccceeEEEecCCC-CCCCcc
Q 039180 625 DELMNLPWLTTLEIDVKNDSILPESFLTQ-------------------------------KLERFKISIGNES-FMPSQS 672 (790)
Q Consensus 625 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-------------------------------~L~~L~l~~~~~~-~~~~~~ 672 (790)
. ..++|+.|++++|.+..+|....++ +|+.|++++|... ..|..+
T Consensus 722 ~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si 798 (1153)
T PLN03210 722 D---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI 798 (1153)
T ss_pred c---ccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhh
Confidence 1 1234555555555555555433333 4444444444322 233344
Q ss_pred ccCCccCeeeccce-ecceecccCCCccccccCCCccEEeeccCCcccccch------------------hHHHhccccc
Q 039180 673 VELPNLEALELCAI-NVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFS------------------ASMIQNFELL 733 (790)
Q Consensus 673 ~~l~~L~~L~l~~~-~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~------------------~~~~~~l~~L 733 (790)
..+++|+.|++++| .++.+ |... .+++|+.|+|++|..+..+|. +..+..+++|
T Consensus 799 ~~L~~L~~L~Ls~C~~L~~L------P~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L 871 (1153)
T PLN03210 799 QNLHKLEHLEIENCINLETL------PTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNL 871 (1153)
T ss_pred hCCCCCCEEECCCCCCcCee------CCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCC
Confidence 55556666666655 44433 2211 344555555555444332211 1234566677
Q ss_pred cEEeeccCchhhhHhhcCCCCCCCCcccCCccceeeccccccccccCh
Q 039180 734 RELSIADCRGLREIISKDRADHVTPCFVFPQMTTLRLEILPELKCYTL 781 (790)
Q Consensus 734 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~l~~ 781 (790)
+.|++++|+.++.++..... +++|+.|++++|++|+.+++
T Consensus 872 ~~L~L~~C~~L~~l~~~~~~--------L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 872 SFLDMNGCNNLQRVSLNISK--------LKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred CEEECCCCCCcCccCccccc--------ccCCCeeecCCCcccccccC
Confidence 77777777777666554333 67777777777877776655
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=5.9e-40 Score=341.91 Aligned_cols=257 Identities=32% Similarity=0.507 Sum_probs=204.7
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHH
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELS----EEAEFRRASRMFE 201 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~l~~ 201 (790)
.+.++|+|+|+||+||||||.+++++...+.+|+.++|++++...+...+++.|+++++.... ..........+.+
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 96 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRE 96 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 368999999999999999999999987778889999999999999999999999999988743 2234446667777
Q ss_pred HHHcCCcEEEEEeCCCCccCccccCccCCCCCCCcEEEEEeCChhHHhhhCC-CceEEccCCCHHHHHHHHHHHhCCCC-
Q 039180 202 RLKNEKKILLILDNTWKSLDLGTIGIPFGVEHRGCKLLFTTRDLDVLIRMGS-EKNFSIGILNEQEAWRLFKIIAGAYV- 279 (790)
Q Consensus 202 ~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtR~~~v~~~~~~-~~~~~l~~L~~~~~~~Lf~~~~~~~~- 279 (790)
.+.+ +++||||||||+...|+.+...++....|++||||||+..++..+.. ...+++++|+.++|++||.+.++...
T Consensus 97 ~L~~-~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~ 175 (287)
T PF00931_consen 97 LLKD-KRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKES 175 (287)
T ss_dssp HHCC-TSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS-
T ss_pred hhcc-ccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7764 79999999999999999988888877789999999999988887654 67999999999999999999997443
Q ss_pred -CCcchHHHHHHHHHHhcCCcHHHHHHHHHHhcC-ChhHHHHHHHHhcCCCCCCcCCCCchhhhhhHHHHHHHHhHHhHH
Q 039180 280 -ENRELKSTATSVAKACRGLPIALTIVVKALRNK-ELPEWKNALQELQMPSETSFDEGVPAEAYSTIELSYKYLGKQLKE 357 (790)
Q Consensus 280 -~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~ 357 (790)
..+..++.+++|+++|+|+||||+++|++|+.+ +..+|+.+++++........ +....++.++.+||+.||+++|.
T Consensus 176 ~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~--~~~~~~~~~l~~s~~~L~~~~~~ 253 (287)
T PF00931_consen 176 ESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESR--DYDRSVFSALELSYDSLPDELRR 253 (287)
T ss_dssp ---TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSS--GSCHHHHHHHHHHHHSSHTCCHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccceechhcCCccHHH
Confidence 345567789999999999999999999999754 77899999988765543221 13456699999999999999999
Q ss_pred HHhhhcccC---CCCHHHHHHHHhhcCccch
Q 039180 358 TILLCSLIA---PTSIMDLINYTMGFGVLKL 385 (790)
Q Consensus 358 ~f~~~s~fp---~~~~~~Li~~w~~eg~~~~ 385 (790)
||.|||+|| .|+.+.|+++|+++||+..
T Consensus 254 ~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 254 CFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred HHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 999999998 6889999999999999854
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=6.7e-26 Score=234.69 Aligned_cols=301 Identities=20% Similarity=0.259 Sum_probs=212.0
Q ss_pred cccceeEEEeecccccCCCCcc-CccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCCChhhhhccccce
Q 039180 450 ALKKYLAISLINSRINDIPEGL-ESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLPSSIYLLVNLQT 528 (790)
Q Consensus 450 ~~~~l~~l~l~~~~~~~l~~~~-~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~ 528 (790)
...++.|+++..|.+..+...+ ..|.+|++....|+.... .+|+++| .+..|.+||||+|++...|..+.+-+++-+
T Consensus 53 ~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKns-GiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iV 130 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNS-GIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIV 130 (1255)
T ss_pred HHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccC-CCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEE
Confidence 4578899999999887765444 788999998887765554 4999987 899999999999999999999999999999
Q ss_pred eeccCccccccchhh-hhccCcccEEeccCCCCcccchhhhcccccceecCCccccccccCchhhccccccceEecccCC
Q 039180 529 LCLDQSILRDIDIAI-IGKLKNLKILSFVRSDIVQLPKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCP 607 (790)
Q Consensus 529 L~L~~~~l~~l~p~~-i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 607 (790)
|+||+|+|+.+ |.+ +-+|+.|-+|||++|++..+|+.+..|..|++|.+++|. +..+....+..|++|++|.+++..
T Consensus 131 LNLS~N~IetI-Pn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~Tq 208 (1255)
T KOG0444|consen 131 LNLSYNNIETI-PNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQ 208 (1255)
T ss_pred EEcccCccccC-CchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhccccc
Confidence 99999999998 554 558999999999999999999999999999999999983 333332234567777888877764
Q ss_pred ccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCcccc-ccccceeEEEecCCC--------------------
Q 039180 608 IEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFL-TQKLERFKISIGNES-------------------- 666 (790)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~-------------------- 666 (790)
-+ ...+|..+..+.+|+.++++.|++..+|.... .++|+.|+|++|.+.
T Consensus 209 RT----------l~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrN 278 (1255)
T KOG0444|consen 209 RT----------LDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRN 278 (1255)
T ss_pred ch----------hhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccc
Confidence 32 22344455555555555555555555554432 445555555555544
Q ss_pred ---CCCCccccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCCcccccchhHHHhccccccEEeeccCch
Q 039180 667 ---FMPSQSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFELLRELSIADCRG 743 (790)
Q Consensus 667 ---~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 743 (790)
..|.....++.|+.|.+.+|+++- ..+|+.++.+.+|+.+..++| ++.-+| ..+..|++|+.|.++.+ .
T Consensus 279 QLt~LP~avcKL~kL~kLy~n~NkL~F----eGiPSGIGKL~~Levf~aanN-~LElVP--EglcRC~kL~kL~L~~N-r 350 (1255)
T KOG0444|consen 279 QLTVLPDAVCKLTKLTKLYANNNKLTF----EGIPSGIGKLIQLEVFHAANN-KLELVP--EGLCRCVKLQKLKLDHN-R 350 (1255)
T ss_pred hhccchHHHhhhHHHHHHHhccCcccc----cCCccchhhhhhhHHHHhhcc-ccccCc--hhhhhhHHHHHhccccc-c
Confidence 444444445555555555553321 123556667777777777666 455553 45677888888888754 4
Q ss_pred hhhHhhcCCCCCCCCcccCCccceeeccccccccccC
Q 039180 744 LREIISKDRADHVTPCFVFPQMTTLRLEILPELKCYT 780 (790)
Q Consensus 744 l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~l~ 780 (790)
+-.+|.... .+|-|+.|++...|+|-.=|
T Consensus 351 LiTLPeaIH--------lL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 351 LITLPEAIH--------LLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred eeechhhhh--------hcCCcceeeccCCcCccCCC
Confidence 444554333 38999999999999886544
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=4.6e-22 Score=242.56 Aligned_cols=246 Identities=24% Similarity=0.207 Sum_probs=125.0
Q ss_pred CCceEEEEecCcccc-CCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCc-ccchhhhcccccceec
Q 039180 500 VKKLRVVALVKMLLS-SLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIV-QLPKALGELTKLRLSD 577 (790)
Q Consensus 500 l~~L~~L~L~~~~~~-~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L~ 577 (790)
+++|++|+|++|.+. .+|..++++++|++|+|++|.+.+..|..++++++|++|++++|.+. .+|..++++++|++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 344444444444443 34445555555555555555544433555555555555555555444 4455555555555555
Q ss_pred CCccccccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCC-CCCccc-ccccc
Q 039180 578 LTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDS-ILPESF-LTQKL 655 (790)
Q Consensus 578 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L 655 (790)
+++|.....+|. .++++++|++|++++|.+. +..+..++.+++|+.|++++|.+. .+|..+ .+++|
T Consensus 219 L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~-----------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 286 (968)
T PLN00113 219 LGYNNLSGEIPY-EIGGLTSLNHLDLVYNNLT-----------GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKL 286 (968)
T ss_pred CcCCccCCcCCh-hHhcCCCCCEEECcCceec-----------cccChhHhCCCCCCEEECcCCeeeccCchhHhhccCc
Confidence 555422222322 2455555555555555432 223445555666666666655532 233333 24566
Q ss_pred ceeEEEecCCCCC-CCccccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCCcccccchhHHHhcccccc
Q 039180 656 ERFKISIGNESFM-PSQSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFELLR 734 (790)
Q Consensus 656 ~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~ 734 (790)
+.|++++|.+... +..+..+++|+.|++++|.+... .|..+..+++|+.|++++|.....+| ..+..+++|+
T Consensus 287 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~p--~~l~~~~~L~ 359 (968)
T PLN00113 287 ISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK-----IPVALTSLPRLQVLQLWSNKFSGEIP--KNLGKHNNLT 359 (968)
T ss_pred CEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCc-----CChhHhcCCCCCEEECcCCCCcCcCC--hHHhCCCCCc
Confidence 6666666655432 22445566666666666655421 34455666666666666664333332 3455666666
Q ss_pred EEeeccCchhhhHhhcCCCCCCCCcccCCccceeeccc
Q 039180 735 ELSIADCRGLREIISKDRADHVTPCFVFPQMTTLRLEI 772 (790)
Q Consensus 735 ~L~l~~c~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~ 772 (790)
.|++++|.....++.... .+++|+.|++++
T Consensus 360 ~L~Ls~n~l~~~~p~~~~--------~~~~L~~L~l~~ 389 (968)
T PLN00113 360 VLDLSTNNLTGEIPEGLC--------SSGNLFKLILFS 389 (968)
T ss_pred EEECCCCeeEeeCChhHh--------CcCCCCEEECcC
Confidence 666666543222322222 366777777654
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=5.2e-22 Score=242.02 Aligned_cols=303 Identities=21% Similarity=0.213 Sum_probs=175.5
Q ss_pred ccceeEEEeecccccC-CCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCcccc-CCChhhhhccccce
Q 039180 451 LKKYLAISLINSRIND-IPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLS-SLPSSIYLLVNLQT 528 (790)
Q Consensus 451 ~~~l~~l~l~~~~~~~-l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~-~lp~~~~~l~~L~~ 528 (790)
..+++++++++|.+.. +|. ...+++++|.+.++.... .+|.. +.++++|++|++++|.+. .+|..++++++|++
T Consensus 117 l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls~n~~~~--~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 192 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLSNNMLSG--EIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF 192 (968)
T ss_pred CCCCCEEECcCCccccccCc-cccCCCCEEECcCCcccc--cCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence 4567777777666643 332 335556665554443322 35544 367777788888777765 56777777777777
Q ss_pred eeccCccccccchhhhhccCcccEEeccCCCCc-ccchhhhcccccceecCCccccccccCchhhccccccceEecccCC
Q 039180 529 LCLDQSILRDIDIAIIGKLKNLKILSFVRSDIV-QLPKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCP 607 (790)
Q Consensus 529 L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 607 (790)
|+|++|.+.+..|..++++++|++|+|++|.+. .+|..++++++|++|++++|...+.+|. .++++++|++|++++|.
T Consensus 193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~ 271 (968)
T PLN00113 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS-SLGNLKNLQYLFLYQNK 271 (968)
T ss_pred eeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccCh-hHhCCCCCCEEECcCCe
Confidence 777777776655777777777777777777766 6777777777777777777733333443 37777777777777776
Q ss_pred ccchhhc-------------ccccccccccccccCCCCCcEEEEEecCCC-CCCccc-cccccceeEEEecCCCC-CCCc
Q 039180 608 IEWEVER-------------ANSERSNSSLDELMNLPWLTTLEIDVKNDS-ILPESF-LTQKLERFKISIGNESF-MPSQ 671 (790)
Q Consensus 608 ~~~~~~~-------------~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~-~~~~ 671 (790)
+....+. ..+...+..+..+..+++|+.|++++|... ..|..+ .+++|+.|++++|.+.. .+..
T Consensus 272 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~ 351 (968)
T PLN00113 272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN 351 (968)
T ss_pred eeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChH
Confidence 5322110 000111223334444555555555555432 222222 24555555555555442 2224
Q ss_pred cccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCCcccccchhHHHhccccccEEeeccCchhhhHhhcC
Q 039180 672 SVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFELLRELSIADCRGLREIISKD 751 (790)
Q Consensus 672 ~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 751 (790)
+..+++|+.|++++|.++.. .|..+..+++|+.|++++|.....+ +..+..+++|+.|++.+|.....++...
T Consensus 352 l~~~~~L~~L~Ls~n~l~~~-----~p~~~~~~~~L~~L~l~~n~l~~~~--p~~~~~~~~L~~L~L~~n~l~~~~p~~~ 424 (968)
T PLN00113 352 LGKHNNLTVLDLSTNNLTGE-----IPEGLCSSGNLFKLILFSNSLEGEI--PKSLGACRSLRRVRLQDNSFSGELPSEF 424 (968)
T ss_pred HhCCCCCcEEECCCCeeEee-----CChhHhCcCCCCEEECcCCEecccC--CHHHhCCCCCCEEECcCCEeeeECChhH
Confidence 44555566666666554421 2444555566666666666433333 2345667777777777775433333322
Q ss_pred CCCCCCCcccCCccceeecccc
Q 039180 752 RADHVTPCFVFPQMTTLRLEIL 773 (790)
Q Consensus 752 ~~~~~~~~~~~p~L~~L~l~~c 773 (790)
. .+|+|+.|+++++
T Consensus 425 ~--------~l~~L~~L~Ls~N 438 (968)
T PLN00113 425 T--------KLPLVYFLDISNN 438 (968)
T ss_pred h--------cCCCCCEEECcCC
Confidence 2 3788888888754
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=3.6e-23 Score=213.44 Aligned_cols=315 Identities=20% Similarity=0.215 Sum_probs=183.9
Q ss_pred cccceeEEEeecccccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCCC-hhhhhccccce
Q 039180 450 ALKKYLAISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLP-SSIYLLVNLQT 528 (790)
Q Consensus 450 ~~~~l~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp-~~~~~l~~L~~ 528 (790)
...+++.+++..|.+..||.+.....-.+.+.+.+|.+. .+...-++.++.||+|||+.|.++.+| .+|..-.++++
T Consensus 100 nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~--sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~ 177 (873)
T KOG4194|consen 100 NLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLIS--SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKK 177 (873)
T ss_pred cCCcceeeeeccchhhhcccccccccceeEEeeeccccc--cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceE
Confidence 345666777777777777766644443444444444444 455555566666666666666666553 23444456666
Q ss_pred eeccCccccccchhhhhccCcccEEeccCCCCcccchhh-hcccccceecCCccccccccCchhhccccccceEecccCC
Q 039180 529 LCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKAL-GELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCP 607 (790)
Q Consensus 529 L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l-~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 607 (790)
|+|++|.|+.+....|..+.+|.+|.|+.|.++.+|... .+|++|+.|++..| .+..+.--.|.++++|+.|.+..|.
T Consensus 178 L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~ 256 (873)
T KOG4194|consen 178 LNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRND 256 (873)
T ss_pred EeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcC
Confidence 666666666655555666666666666666666665433 33666666666655 3333222224444444444444444
Q ss_pred ccchhhccc-------------ccccccccccccCCCCCcEEEEEecCCCCC--CccccccccceeEEEecCCCCCCC-c
Q 039180 608 IEWEVERAN-------------SERSNSSLDELMNLPWLTTLEIDVKNDSIL--PESFLTQKLERFKISIGNESFMPS-Q 671 (790)
Q Consensus 608 ~~~~~~~~~-------------~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~-~ 671 (790)
+..-.++.. +....-.-..+-.++.|+.|+++.|.+..+ ..|.++++|+.|+|++|.+...+. .
T Consensus 257 I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~s 336 (873)
T KOG4194|consen 257 ISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGS 336 (873)
T ss_pred cccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhH
Confidence 321111100 000111123455667777777777775543 345567788888888887776665 5
Q ss_pred cccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCCcccccch-hHHHhccccccEEeeccCchhhhHhhc
Q 039180 672 SVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFS-ASMIQNFELLRELSIADCRGLREIISK 750 (790)
Q Consensus 672 ~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~ 750 (790)
+..+..|+.|.|++|.+..+. ...+..+++|++|+|+.|..--.+.. ...+.++|+|+.|.+.++ +++.++..
T Consensus 337 f~~L~~Le~LnLs~Nsi~~l~-----e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~kr 410 (873)
T KOG4194|consen 337 FRVLSQLEELNLSHNSIDHLA-----EGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKR 410 (873)
T ss_pred HHHHHHhhhhcccccchHHHH-----hhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchh
Confidence 666777888888888766552 22356678888888887742211111 134567888888888875 67777765
Q ss_pred CCCCCCCCcccCCccceeeccccccccccCh
Q 039180 751 DRADHVTPCFVFPQMTTLRLEILPELKCYTL 781 (790)
Q Consensus 751 ~~~~~~~~~~~~p~L~~L~l~~c~~L~~l~~ 781 (790)
... +++.|++|+|.+-+ +.++-.
T Consensus 411 Afs-------gl~~LE~LdL~~Na-iaSIq~ 433 (873)
T KOG4194|consen 411 AFS-------GLEALEHLDLGDNA-IASIQP 433 (873)
T ss_pred hhc-------cCcccceecCCCCc-ceeecc
Confidence 443 58888888887754 555543
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=1.4e-23 Score=217.68 Aligned_cols=275 Identities=22% Similarity=0.298 Sum_probs=234.0
Q ss_pred cccceeEEEeecccccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCCChhhhhcccccee
Q 039180 450 ALKKYLAISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLPSSIYLLVNLQTL 529 (790)
Q Consensus 450 ~~~~l~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L 529 (790)
..+.+..++++.|.+.++|..+...+-...+.+++|.+. .||..+|-++.-|-+||||+|.+..+|+.+..|.+|++|
T Consensus 101 ~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie--tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE--TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTL 178 (1255)
T ss_pred ccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc--cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhh
Confidence 467899999999999999999866666666677777777 799999999999999999999999999999999999999
Q ss_pred eccCccccccchhhhhccCcccEEeccCCC--CcccchhhhcccccceecCCccccccccCchhhccccccceEecccCC
Q 039180 530 CLDQSILRDIDIAIIGKLKNLKILSFVRSD--IVQLPKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCP 607 (790)
Q Consensus 530 ~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~--l~~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 607 (790)
.|++|.+...-...+-.|+.|++|.+++++ +..+|.++..|.+|+.++++.| ++..+|.. +.++++|+.|++++|.
T Consensus 179 ~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPec-ly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 179 KLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPEC-LYKLRNLRRLNLSGNK 256 (1255)
T ss_pred hcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHH-HhhhhhhheeccCcCc
Confidence 999999776545556678889999999984 4489999999999999999998 78888765 8899999999999998
Q ss_pred ccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCcccc-ccccceeEEEecCCC--CCCCccccCCccCeeecc
Q 039180 608 IEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFL-TQKLERFKISIGNES--FMPSQSVELPNLEALELC 684 (790)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~ 684 (790)
++.. -...+...+|++|+++.|.+..+|..+. +++|+.|.+.+|.+. .+|+.++.+.+|+.+..+
T Consensus 257 iteL------------~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aa 324 (1255)
T KOG0444|consen 257 ITEL------------NMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAA 324 (1255)
T ss_pred eeee------------eccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhh
Confidence 7521 1123345689999999999999998875 789999999888765 567789999999999999
Q ss_pred ceecceecccCCCccccccCCCccEEeeccCCcccccchhHHHhccccccEEeeccCchhhhHhh
Q 039180 685 AINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFELLRELSIADCRGLREIIS 749 (790)
Q Consensus 685 ~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 749 (790)
+|.++-+ |..+..|++|+.|.|+.|. +-.+ +..+.-+|.|+.|++..++++..-|.
T Consensus 325 nN~LElV------PEglcRC~kL~kL~L~~Nr-LiTL--PeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 325 NNKLELV------PEGLCRCVKLQKLKLDHNR-LITL--PEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred ccccccC------chhhhhhHHHHHhcccccc-eeec--hhhhhhcCCcceeeccCCcCccCCCC
Confidence 9988754 8889999999999999995 4455 35677899999999999998876554
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=1.2e-22 Score=209.74 Aligned_cols=294 Identities=20% Similarity=0.277 Sum_probs=193.8
Q ss_pred ccceeEEEeecccccCCCCcc--CccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCCCh-hhhhccccc
Q 039180 451 LKKYLAISLINSRINDIPEGL--ESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLPS-SIYLLVNLQ 527 (790)
Q Consensus 451 ~~~l~~l~l~~~~~~~l~~~~--~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp~-~~~~l~~L~ 527 (790)
...+|.++++.|.+..+|... ...++..|.+.+ |.+. .+-.+.|.++.+|-.|.|+.|.++.+|. .|.+|++|+
T Consensus 148 l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~-N~It--~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~ 224 (873)
T KOG4194|consen 148 LPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLAS-NRIT--TLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLE 224 (873)
T ss_pred HhhhhhhhhhhchhhcccCCCCCCCCCceEEeecc-cccc--ccccccccccchheeeecccCcccccCHHHhhhcchhh
Confidence 345555555555555554322 223333333322 2333 3444445555555555555555555543 333455566
Q ss_pred eeeccCccccccchhhhhccCcccEEeccCCCCcccchh-hhcccccceecCCccccccccCchhhccccccceEecccC
Q 039180 528 TLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKA-LGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNC 606 (790)
Q Consensus 528 ~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 606 (790)
.|+|..|.+.......|..|++|+.|.|..|.|..+.++ +..|.++++|++..| .+..+..+.+.+++.|+.|+++.|
T Consensus 225 ~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~N 303 (873)
T KOG4194|consen 225 SLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYN 303 (873)
T ss_pred hhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc-hhhhhhcccccccchhhhhccchh
Confidence 666655554443334455555556666655555544433 456677777777776 566666666777788888888877
Q ss_pred CccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCcccc--ccccceeEEEecCCCCCCC-ccccCCccCeeec
Q 039180 607 PIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFL--TQKLERFKISIGNESFMPS-QSVELPNLEALEL 683 (790)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l 683 (790)
.+. ...++....+++|+.|+++.|.+..+++..+ +..|+.|.|+.|.+..+.. .+..+.+|+.|+|
T Consensus 304 aI~-----------rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdL 372 (873)
T KOG4194|consen 304 AIQ-----------RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDL 372 (873)
T ss_pred hhh-----------eeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcC
Confidence 763 3346677788999999999999999987765 7899999999999876655 6677899999999
Q ss_pred cceecceecccCCCccccccCCCccEEeeccCCcccccchhHHHhccccccEEeeccCchhhhHhhcCCCCCCCCcccCC
Q 039180 684 CAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFELLRELSIADCRGLREIISKDRADHVTPCFVFP 763 (790)
Q Consensus 684 ~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~p 763 (790)
.+|.+.-...+... .+.++++|+.|.+.+| +++.++. ..+.+|++|++|++.+++ +.++...... .+
T Consensus 373 r~N~ls~~IEDaa~--~f~gl~~LrkL~l~gN-qlk~I~k-rAfsgl~~LE~LdL~~Na-iaSIq~nAFe-------~m- 439 (873)
T KOG4194|consen 373 RSNELSWCIEDAAV--AFNGLPSLRKLRLTGN-QLKSIPK-RAFSGLEALEHLDLGDNA-IASIQPNAFE-------PM- 439 (873)
T ss_pred cCCeEEEEEecchh--hhccchhhhheeecCc-eeeecch-hhhccCcccceecCCCCc-ceeecccccc-------cc-
Confidence 99976643333322 2677999999999999 7899865 568899999999999974 5556554443 23
Q ss_pred ccceeeccc
Q 039180 764 QMTTLRLEI 772 (790)
Q Consensus 764 ~L~~L~l~~ 772 (790)
.|+.|.+..
T Consensus 440 ~Lk~Lv~nS 448 (873)
T KOG4194|consen 440 ELKELVMNS 448 (873)
T ss_pred hhhhhhhcc
Confidence 777776543
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.79 E-value=8.2e-19 Score=213.92 Aligned_cols=307 Identities=20% Similarity=0.240 Sum_probs=214.3
Q ss_pred ccceeEEEeecccccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCcc-ccCCChhhhhcccccee
Q 039180 451 LKKYLAISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKML-LSSLPSSIYLLVNLQTL 529 (790)
Q Consensus 451 ~~~l~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~-~~~lp~~~~~l~~L~~L 529 (790)
+..+|.+.+.++.+..+|..+...+++.|.+.++ .+. .++.++ ..+++|+.|+|+++. +..+| .++.+++|++|
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s-~l~--~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L 662 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGS-KLE--KLWDGV-HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETL 662 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcCCccCCcEEECcCc-ccc--cccccc-ccCCCCCEEECCCCCCcCcCC-ccccCCcccEE
Confidence 4678999999999999998887777777666554 444 566655 688999999998774 56676 47888999999
Q ss_pred eccCcc-ccccchhhhhccCcccEEeccCC-CCcccchhhhcccccceecCCccccccccCchhhccccccceEecccCC
Q 039180 530 CLDQSI-LRDIDIAIIGKLKNLKILSFVRS-DIVQLPKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCP 607 (790)
Q Consensus 530 ~L~~~~-l~~l~p~~i~~l~~L~~L~L~~~-~l~~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 607 (790)
+|++|. +..+ |..++++++|++|++++| .++.+|..+ ++++|++|++++|..+..+|.. .++|++|++++|.
T Consensus 663 ~L~~c~~L~~l-p~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~ 736 (1153)
T PLN03210 663 KLSDCSSLVEL-PSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETA 736 (1153)
T ss_pred EecCCCCcccc-chhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCc
Confidence 999987 5555 888999999999999997 677888766 7888999999888766655431 3455555555554
Q ss_pred ccchhhc------------------------------------------ccccccccccccccCCCCCcEEEEEecC-CC
Q 039180 608 IEWEVER------------------------------------------ANSERSNSSLDELMNLPWLTTLEIDVKN-DS 644 (790)
Q Consensus 608 ~~~~~~~------------------------------------------~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~ 644 (790)
+...... ..+......+..++++++|+.|++++|. ..
T Consensus 737 i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~ 816 (1153)
T PLN03210 737 IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE 816 (1153)
T ss_pred cccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcC
Confidence 3211000 0001112245556677777777777653 55
Q ss_pred CCCccccccccceeEEEecCCCCCCCccccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCCcccccchh
Q 039180 645 ILPESFLTQKLERFKISIGNESFMPSQSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSA 724 (790)
Q Consensus 645 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~ 724 (790)
.+|....+++|+.|++++|...... ....++|+.|+|++|.++.+ |.++..+++|+.|+|++|+.+..++.
T Consensus 817 ~LP~~~~L~sL~~L~Ls~c~~L~~~--p~~~~nL~~L~Ls~n~i~~i------P~si~~l~~L~~L~L~~C~~L~~l~~- 887 (1153)
T PLN03210 817 TLPTGINLESLESLDLSGCSRLRTF--PDISTNISDLNLSRTGIEEV------PWWIEKFSNLSFLDMNGCNNLQRVSL- 887 (1153)
T ss_pred eeCCCCCccccCEEECCCCCccccc--cccccccCEeECCCCCCccC------hHHHhcCCCCCEEECCCCCCcCccCc-
Confidence 6666656677777777766533221 12246788888888877754 77789999999999999999999854
Q ss_pred HHHhccccccEEeeccCchhhhHhhcCCCCC-----CCCcccCCccceeeccccccccc
Q 039180 725 SMIQNFELLRELSIADCRGLREIISKDRADH-----VTPCFVFPQMTTLRLEILPELKC 778 (790)
Q Consensus 725 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~-----~~~~~~~p~L~~L~l~~c~~L~~ 778 (790)
....+++|+.|++++|..+..+........ ......+|....+.+.+|.+|..
T Consensus 888 -~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~ 945 (1153)
T PLN03210 888 -NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQ 945 (1153)
T ss_pred -ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCc
Confidence 467899999999999999886644221100 00112466667778888888763
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.79 E-value=4.6e-21 Score=189.73 Aligned_cols=195 Identities=19% Similarity=0.272 Sum_probs=108.6
Q ss_pred ccceeEEEeecccccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCCChhhhhccccceee
Q 039180 451 LKKYLAISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLPSSIYLLVNLQTLC 530 (790)
Q Consensus 451 ~~~l~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~ 530 (790)
...++++.++.|....+|+.+........+...+|.+. .+|+++ .++.+|..|++.+|.+..+|...-+++.|++||
T Consensus 113 ~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~--slp~~~-~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld 189 (565)
T KOG0472|consen 113 LISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQIS--SLPEDM-VNLSKLSKLDLEGNKLKALPENHIAMKRLKHLD 189 (565)
T ss_pred hhhhhhhhccccceeecCchHHHHhhhhhhhccccccc--cCchHH-HHHHHHHHhhccccchhhCCHHHHHHHHHHhcc
Confidence 34556666666666666665533333333333333343 466655 356666666666666666655555566666666
Q ss_pred ccCccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceecCCccccccccCchhhccccccceEecccCCccc
Q 039180 531 LDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEW 610 (790)
Q Consensus 531 L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 610 (790)
...|-++.+ |+.++.|.+|..|+|..|++..+| .|+.+..|.+|+++.| .++.+|.....++++|.+|++.+|.+.
T Consensus 190 ~~~N~L~tl-P~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRdNklk- 265 (565)
T KOG0472|consen 190 CNSNLLETL-PPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRDNKLK- 265 (565)
T ss_pred cchhhhhcC-ChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhccc-HHHhhHHHHhcccccceeeeccccccc-
Confidence 666666666 666666666666666666666666 4556666666666554 455555554445666666666655542
Q ss_pred hhhcccccccccccccccCCCCCcEEEEEecCCCCCCccccccccceeEEEec
Q 039180 611 EVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFLTQKLERFKISIG 663 (790)
Q Consensus 611 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 663 (790)
+.|.++.-+.+|..|++++|.++.+|...+.-+|+.|.+.+|
T Consensus 266 -----------e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnlhL~~L~leGN 307 (565)
T KOG0472|consen 266 -----------EVPDEICLLRSLERLDLSNNDISSLPYSLGNLHLKFLALEGN 307 (565)
T ss_pred -----------cCchHHHHhhhhhhhcccCCccccCCcccccceeeehhhcCC
Confidence 234444445555555555555555554443224444444443
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.73 E-value=2.2e-20 Score=185.03 Aligned_cols=240 Identities=21% Similarity=0.319 Sum_probs=178.6
Q ss_pred cccceeEEEeecccccCCCCcc-CccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCCChhhhhccccce
Q 039180 450 ALKKYLAISLINSRINDIPEGL-ESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLPSSIYLLVNLQT 528 (790)
Q Consensus 450 ~~~~l~~l~l~~~~~~~l~~~~-~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~ 528 (790)
....+..+.+++|....+|+.+ ....+..+....++.. .+|+.+ ..+..|+.|++++|.+..+|++++.+..|..
T Consensus 66 nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls---~lp~~i-~s~~~l~~l~~s~n~~~el~~~i~~~~~l~d 141 (565)
T KOG0472|consen 66 NLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS---ELPEQI-GSLISLVKLDCSSNELKELPDSIGRLLDLED 141 (565)
T ss_pred cccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh---hccHHH-hhhhhhhhhhccccceeecCchHHHHhhhhh
Confidence 3455666777777777777665 4445555555544433 477665 5677777788888877778888888888888
Q ss_pred eeccCccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceecCCccccccccCchhhccccccceEecccCCc
Q 039180 529 LCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPI 608 (790)
Q Consensus 529 L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 608 (790)
|+..+|++..+ |..++++.+|..|++.+|+++.+|+....++.|++|+...| .++.+|+. ++.|.+|+.|++..|.+
T Consensus 142 l~~~~N~i~sl-p~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~-lg~l~~L~~LyL~~Nki 218 (565)
T KOG0472|consen 142 LDATNNQISSL-PEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPE-LGGLESLELLYLRRNKI 218 (565)
T ss_pred hhccccccccC-chHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChh-hcchhhhHHHHhhhccc
Confidence 88888877777 77777788888888888888777777666888888887776 67777776 78888888888888776
Q ss_pred cchhhcccccccccccccccCCCCCcEEEEEecCCCCCCcccc--ccccceeEEEecCCCCCCCccccCCccCeeeccce
Q 039180 609 EWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFL--TQKLERFKISIGNESFMPSQSVELPNLEALELCAI 686 (790)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~ 686 (790)
. +..+|..|..|.+|+++.|.+..+|.... +++|..|++..|.+.+.|..+..+.+|+.|++++|
T Consensus 219 ~-------------~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN 285 (565)
T KOG0472|consen 219 R-------------FLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNN 285 (565)
T ss_pred c-------------cCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCC
Confidence 4 23367778888888888888777777664 67778888888888888887777788888888888
Q ss_pred ecceecccCCCccccccCCCccEEeeccCC
Q 039180 687 NVDKIWHYNLLPFMLSRFQSLTRLIVRSCP 716 (790)
Q Consensus 687 ~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~ 716 (790)
.++.+ |..++++ +|+.|.+.|||
T Consensus 286 ~is~L------p~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 286 DISSL------PYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred ccccC------Ccccccc-eeeehhhcCCc
Confidence 77754 6667888 88888888886
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.67 E-value=3.1e-16 Score=177.26 Aligned_cols=252 Identities=15% Similarity=0.129 Sum_probs=176.8
Q ss_pred eEecCCccccCCCcccccceeEEEeecccccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCcccc
Q 039180 435 FVVRNKNMWEWPNPDALKKYLAISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLS 514 (790)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~ 514 (790)
+.++...+..+|. ..+.+++.+.+.+|.+..+|.. .+++++|.+.+ |.+. .+|. ..++|+.|++++|.+.
T Consensus 206 LdLs~~~LtsLP~-~l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~-N~Lt--sLP~----lp~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 206 LNVGESGLTTLPD-CLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSG-NQLT--SLPV----LPPGLLELSIFSNPLT 275 (788)
T ss_pred EEcCCCCCCcCCc-chhcCCCEEEccCCcCCCCCCC--CCCCcEEEecC-CccC--cccC----cccccceeeccCCchh
Confidence 3444445555554 3445788888888888888864 35666666544 4555 4664 2367888888888888
Q ss_pred CCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceecCCccccccccCchhhcc
Q 039180 515 SLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSDLTDCFHLKVIAPNVISS 594 (790)
Q Consensus 515 ~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~ 594 (790)
.+|... .+|+.|++++|.++.+ |. .+++|++|++++|.++.+|... .+|+.|++++| .++.+|. +
T Consensus 276 ~Lp~lp---~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N-~L~~LP~--l-- 340 (788)
T PRK15387 276 HLPALP---SGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASLPALP---SELCKLWAYNN-QLTSLPT--L-- 340 (788)
T ss_pred hhhhch---hhcCEEECcCCccccc-cc---cccccceeECCCCccccCCCCc---ccccccccccC-ccccccc--c--
Confidence 777533 5677888888888876 54 2467888899888888877532 35777888887 6666664 1
Q ss_pred ccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCccccccccceeEEEecCCCCCCCcccc
Q 039180 595 LTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFLTQKLERFKISIGNESFMPSQSVE 674 (790)
Q Consensus 595 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 674 (790)
..+|+.|++++|.+.. .+. ..++|+.|++++|.+..+|.. ..+|+.|++++|.+...|..
T Consensus 341 p~~Lq~LdLS~N~Ls~------------LP~---lp~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~LP~l--- 400 (788)
T PRK15387 341 PSGLQELSVSDNQLAS------------LPT---LPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVL--- 400 (788)
T ss_pred ccccceEecCCCccCC------------CCC---CCcccceehhhccccccCccc--ccccceEEecCCcccCCCCc---
Confidence 2578889998887742 111 124677888888888777764 46788999998888766542
Q ss_pred CCccCeeeccceecceecccCCCccccccCCCccEEeeccCCcccccchhHHHhccccccEEeeccCch
Q 039180 675 LPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFELLRELSIADCRG 743 (790)
Q Consensus 675 l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 743 (790)
.++|+.|++++|.++.+ |. .+.+|+.|++++| .++.+| ..+..+++|+.|++++++.
T Consensus 401 ~s~L~~LdLS~N~LssI------P~---l~~~L~~L~Ls~N-qLt~LP--~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 401 PSELKELMVSGNRLTSL------PM---LPSGLLSLSVYRN-QLTRLP--ESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred ccCCCEEEccCCcCCCC------Cc---chhhhhhhhhccC-cccccC--hHHhhccCCCeEECCCCCC
Confidence 36788999999988754 32 2357888899888 577774 3467889999999998764
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.64 E-value=5.6e-16 Score=176.52 Aligned_cols=161 Identities=18% Similarity=0.301 Sum_probs=70.9
Q ss_pred ceEEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceecCCcc
Q 039180 502 KLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSDLTDC 581 (790)
Q Consensus 502 ~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~ 581 (790)
+|+.|++++|.++.+|..+. .+|+.|+|++|.+..+ |..+. .+|++|++++|+++.+|..+. ++|++|++++|
T Consensus 221 nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~L-P~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N 293 (754)
T PRK15370 221 NIKTLYANSNQLTSIPATLP--DTIQEMELSINRITEL-PERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN 293 (754)
T ss_pred CCCEEECCCCccccCChhhh--ccccEEECcCCccCcC-ChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC
Confidence 45555555555554444332 2455555555555444 43332 245555555555554444332 24555555554
Q ss_pred ccccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCccccccccceeEEE
Q 039180 582 FHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFLTQKLERFKIS 661 (790)
Q Consensus 582 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 661 (790)
.++.+|.. + .++|+.|++++|.+.. .+..+ .++|+.|++++|.+..+|..+ +++|+.|+++
T Consensus 294 -~Lt~LP~~-l--p~sL~~L~Ls~N~Lt~------------LP~~l--~~sL~~L~Ls~N~Lt~LP~~l-~~sL~~L~Ls 354 (754)
T PRK15370 294 -SIRTLPAH-L--PSGITHLNVQSNSLTA------------LPETL--PPGLKTLEAGENALTSLPASL-PPELQVLDVS 354 (754)
T ss_pred -ccccCccc-c--hhhHHHHHhcCCcccc------------CCccc--cccceeccccCCccccCChhh-cCcccEEECC
Confidence 34444332 1 1244445555444421 01111 134455555555444444332 2445555555
Q ss_pred ecCCCCCCCccccCCccCeeeccceecce
Q 039180 662 IGNESFMPSQSVELPNLEALELCAINVDK 690 (790)
Q Consensus 662 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~ 690 (790)
+|.+...|..+ .++|+.|++++|.++.
T Consensus 355 ~N~L~~LP~~l--p~~L~~LdLs~N~Lt~ 381 (754)
T PRK15370 355 KNQITVLPETL--PPTITTLDVSRNALTN 381 (754)
T ss_pred CCCCCcCChhh--cCCcCEEECCCCcCCC
Confidence 55444333211 2345555555554443
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.64 E-value=1.5e-17 Score=181.75 Aligned_cols=229 Identities=21% Similarity=0.296 Sum_probs=104.6
Q ss_pred CCChhhhccCCceEEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhhhc-
Q 039180 491 NIPENFFKGVKKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGE- 569 (790)
Q Consensus 491 ~lp~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~- 569 (790)
.+| ++...+.+|..+...+|.+..+|..+...++|++|.+..|.++.+ |...+.++.|++|+|..|++..+|+.+-.
T Consensus 255 ~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yi-p~~le~~~sL~tLdL~~N~L~~lp~~~l~v 332 (1081)
T KOG0618|consen 255 NLP-EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYI-PPFLEGLKSLRTLDLQSNNLPSLPDNFLAV 332 (1081)
T ss_pred cch-HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhC-CCcccccceeeeeeehhccccccchHHHhh
Confidence 344 344444444444444444444444444444444444444444444 44444444444444444444444442211
Q ss_pred cc-ccceecCCccccccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCc
Q 039180 570 LT-KLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPE 648 (790)
Q Consensus 570 l~-~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 648 (790)
+. .|+.|+.+.| .+...|...=..++.|+.|++.+|.++ ......+.+..+|+.|++++|.+..+|.
T Consensus 333 ~~~~l~~ln~s~n-~l~~lp~~~e~~~~~Lq~LylanN~Lt-----------d~c~p~l~~~~hLKVLhLsyNrL~~fpa 400 (1081)
T KOG0618|consen 333 LNASLNTLNVSSN-KLSTLPSYEENNHAALQELYLANNHLT-----------DSCFPVLVNFKHLKVLHLSYNRLNSFPA 400 (1081)
T ss_pred hhHHHHHHhhhhc-cccccccccchhhHHHHHHHHhcCccc-----------ccchhhhccccceeeeeecccccccCCH
Confidence 11 1333443333 333333211123444555555555442 2233344555556666666665555555
Q ss_pred ccc--ccccceeEEEecCCCCCCCccccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCCcccccchhHH
Q 039180 649 SFL--TQKLERFKISIGNESFMPSQSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASM 726 (790)
Q Consensus 649 ~~~--~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~ 726 (790)
... +..|+.|.|++|.+...+.....++.|+.|...+|.+..+ | .+..++.|+.++++.| .++.+..+..
T Consensus 401 s~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~f------P-e~~~l~qL~~lDlS~N-~L~~~~l~~~ 472 (1081)
T KOG0618|consen 401 SKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSF------P-ELAQLPQLKVLDLSCN-NLSEVTLPEA 472 (1081)
T ss_pred HHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeec------h-hhhhcCcceEEecccc-hhhhhhhhhh
Confidence 432 3445555555555555555444555555555555544432 3 3445555555555555 3333321111
Q ss_pred HhccccccEEeeccCc
Q 039180 727 IQNFELLRELSIADCR 742 (790)
Q Consensus 727 ~~~l~~L~~L~l~~c~ 742 (790)
.. -|+|++|+++++.
T Consensus 473 ~p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 473 LP-SPNLKYLDLSGNT 487 (1081)
T ss_pred CC-CcccceeeccCCc
Confidence 11 1455555555543
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.64 E-value=2.5e-15 Score=169.96 Aligned_cols=71 Identities=23% Similarity=0.227 Sum_probs=30.7
Q ss_pred CceEEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceecCCc
Q 039180 501 KKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSDLTD 580 (790)
Q Consensus 501 ~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~ 580 (790)
++|++|++++|+++.+|.. .++|+.|++++|.++.+ |.. ..+|+.|++++|+++.+|.. +++|+.|++++
T Consensus 242 ~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~L-p~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~ 311 (788)
T PRK15387 242 PELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHL-PAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSD 311 (788)
T ss_pred CCCcEEEecCCccCcccCc---ccccceeeccCCchhhh-hhc---hhhcCEEECcCCcccccccc---ccccceeECCC
Confidence 4444445544444444422 23444444444444443 321 12344444444444444431 23444444444
Q ss_pred c
Q 039180 581 C 581 (790)
Q Consensus 581 ~ 581 (790)
|
T Consensus 312 N 312 (788)
T PRK15387 312 N 312 (788)
T ss_pred C
Confidence 4
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.63 E-value=2.9e-17 Score=179.48 Aligned_cols=267 Identities=21% Similarity=0.197 Sum_probs=214.5
Q ss_pred CccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCccc
Q 039180 472 ESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLK 551 (790)
Q Consensus 472 ~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~ 551 (790)
..++++.|....+.... ..+. ..-.+|++++++.+.++.+|++++.+.+|+.|+..+|.+..+ |..+....+|+
T Consensus 217 ~g~~l~~L~a~~n~l~~--~~~~---p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~l-p~ri~~~~~L~ 290 (1081)
T KOG0618|consen 217 SGPSLTALYADHNPLTT--LDVH---PVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVAL-PLRISRITSLV 290 (1081)
T ss_pred cCcchheeeeccCccee--eccc---cccccceeeecchhhhhcchHHHHhcccceEecccchhHHhh-HHHHhhhhhHH
Confidence 34556666555543322 1111 234689999999999999999999999999999999999888 99999999999
Q ss_pred EEeccCCCCcccchhhhcccccceecCCccccccccCchhhccccc-cceEecccCCccchhhcccccccccccccccCC
Q 039180 552 ILSFVRSDIVQLPKALGELTKLRLSDLTDCFHLKVIAPNVISSLTR-LEELYMGNCPIEWEVERANSERSNSSLDELMNL 630 (790)
Q Consensus 552 ~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l 630 (790)
.|.+..|.+..+|.....++.|++|++..| .+..+|...+..+.. |..|+.+.+.+.... ... =..+
T Consensus 291 ~l~~~~nel~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp----------~~~-e~~~ 358 (1081)
T KOG0618|consen 291 SLSAAYNELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLP----------SYE-ENNH 358 (1081)
T ss_pred HHHhhhhhhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccc----------ccc-chhh
Confidence 999999999999999999999999999998 888898876655554 777777776653111 011 1134
Q ss_pred CCCcEEEEEecCC--CCCCccccccccceeEEEecCCCCCCC-ccccCCccCeeeccceecceecccCCCccccccCCCc
Q 039180 631 PWLTTLEIDVKND--SILPESFLTQKLERFKISIGNESFMPS-QSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSL 707 (790)
Q Consensus 631 ~~L~~L~l~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L 707 (790)
+.|+.|.+.+|.+ ..+|....+.+|+.|+|++|.+...|. ...+++.|+.|+|++|.++.+ |..+..++.|
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~L------p~tva~~~~L 432 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTL------PDTVANLGRL 432 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhh------hHHHHhhhhh
Confidence 5688889998884 457777789999999999999998887 778899999999999999876 7788999999
Q ss_pred cEEeeccCCcccccchhHHHhccccccEEeeccCchhhhHhhcCCCCCCCCcccC-Cccceeecccccc
Q 039180 708 TRLIVRSCPKLKYIFSASMIQNFELLRELSIADCRGLREIISKDRADHVTPCFVF-PQMTTLRLEILPE 775 (790)
Q Consensus 708 ~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~-p~L~~L~l~~c~~ 775 (790)
++|...+| .+...| -+..+|.|+.++++. .++..+...+.. - |+|++|++++-+.
T Consensus 433 ~tL~ahsN-~l~~fP---e~~~l~qL~~lDlS~-N~L~~~~l~~~~--------p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 433 HTLRAHSN-QLLSFP---ELAQLPQLKVLDLSC-NNLSEVTLPEAL--------PSPNLKYLDLSGNTR 488 (1081)
T ss_pred HHHhhcCC-ceeech---hhhhcCcceEEeccc-chhhhhhhhhhC--------CCcccceeeccCCcc
Confidence 99999888 566654 477899999999995 578888776554 3 8999999998664
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.58 E-value=4.6e-17 Score=142.96 Aligned_cols=142 Identities=26% Similarity=0.380 Sum_probs=104.1
Q ss_pred CChhhhccCCceEEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCc--ccchhhhc
Q 039180 492 IPENFFKGVKKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIV--QLPKALGE 569 (790)
Q Consensus 492 lp~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~--~lp~~l~~ 569 (790)
+|+++ ..+.+|++|++++|+++.+|.+++.++.|+.|++.-|++..+ |..||.++-|+.|||++|++. .+|..+..
T Consensus 48 vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~l-prgfgs~p~levldltynnl~e~~lpgnff~ 125 (264)
T KOG0617|consen 48 VPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNIL-PRGFGSFPALEVLDLTYNNLNENSLPGNFFY 125 (264)
T ss_pred cCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcC-ccccCCCchhhhhhccccccccccCCcchhH
Confidence 45554 567777777777777777777777778888887777777666 777777777888888777665 67777777
Q ss_pred ccccceecCCccccccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCcc
Q 039180 570 LTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPES 649 (790)
Q Consensus 570 l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 649 (790)
+..|+-|++++| ..+.+|+. ++++++||.|.+..|.+. ..+.+++.+..|+.|+|.+|....+|+.
T Consensus 126 m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdndll------------~lpkeig~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 126 MTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDNDLL------------SLPKEIGDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred HHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCchh------------hCcHHHHHHHHHHHHhcccceeeecChh
Confidence 777777777776 56667666 677788887777777652 3456777777777777777776666654
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.58 E-value=5e-15 Score=168.84 Aligned_cols=231 Identities=19% Similarity=0.281 Sum_probs=181.4
Q ss_pred cccceeEEEeecccccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCCChhhhhcccccee
Q 039180 450 ALKKYLAISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLPSSIYLLVNLQTL 529 (790)
Q Consensus 450 ~~~~l~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L 529 (790)
.+..++.+.+++|.+..+|..+. .++++|.+.+ |.+. .+|..+. ++|+.|+|++|.+..+|..+. .+|++|
T Consensus 197 Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~-N~Lt--sLP~~l~---~~L~~L~Ls~N~L~~LP~~l~--s~L~~L 267 (754)
T PRK15370 197 IPEQITTLILDNNELKSLPENLQ-GNIKTLYANS-NQLT--SIPATLP---DTIQEMELSINRITELPERLP--SALQSL 267 (754)
T ss_pred cccCCcEEEecCCCCCcCChhhc-cCCCEEECCC-Cccc--cCChhhh---ccccEEECcCCccCcCChhHh--CCCCEE
Confidence 46789999999999999997653 5777776655 4555 6887653 479999999999999998775 589999
Q ss_pred eccCccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceecCCccccccccCchhhccccccceEecccCCcc
Q 039180 530 CLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIE 609 (790)
Q Consensus 530 ~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 609 (790)
++++|.++.+ |..+. .+|++|++++|+++.+|..+. ++|++|++++| .+..+|.. + .++|+.|++++|.+.
T Consensus 268 ~Ls~N~L~~L-P~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N-~Lt~LP~~-l--~~sL~~L~Ls~N~Lt 338 (754)
T PRK15370 268 DLFHNKISCL-PENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSN-SLTALPET-L--PPGLKTLEAGENALT 338 (754)
T ss_pred ECcCCccCcc-ccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCC-ccccCCcc-c--cccceeccccCCccc
Confidence 9999999987 76654 589999999999999987653 57999999998 67777754 2 378999999999874
Q ss_pred chhhcccccccccccccccCCCCCcEEEEEecCCCCCCccccccccceeEEEecCCCCCCCccccCCccCeeeccceecc
Q 039180 610 WEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFLTQKLERFKISIGNESFMPSQSVELPNLEALELCAINVD 689 (790)
Q Consensus 610 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 689 (790)
. .+..+ .++|+.|++++|.+..+|..+ .++|+.|++++|.+...|..+ .++|+.|++++|+++
T Consensus 339 ~------------LP~~l--~~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdLs~N~Lt~LP~~l--~~sL~~LdLs~N~L~ 401 (754)
T PRK15370 339 S------------LPASL--PPELQVLDVSKNQITVLPETL-PPTITTLDVSRNALTNLPENL--PAALQIMQASRNNLV 401 (754)
T ss_pred c------------CChhh--cCcccEEECCCCCCCcCChhh-cCCcCEEECCCCcCCCCCHhH--HHHHHHHhhccCCcc
Confidence 2 22223 368999999999988888754 578999999999988776633 247999999999887
Q ss_pred eecccCCCccccccCCCccEEeeccCCc
Q 039180 690 KIWHYNLLPFMLSRFQSLTRLIVRSCPK 717 (790)
Q Consensus 690 ~l~~~~~~~~~~~~l~~L~~L~L~~~~~ 717 (790)
.+. ...|...+.++.+..|++.+|+.
T Consensus 402 ~LP--~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 402 RLP--ESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred cCc--hhHHHHhhcCCCccEEEeeCCCc
Confidence 651 11233445568999999999963
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.55 E-value=2.8e-16 Score=156.06 Aligned_cols=146 Identities=23% Similarity=0.341 Sum_probs=120.4
Q ss_pred EEeecccccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCC-ChhhhhccccceeeccC-c
Q 039180 457 ISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSL-PSSIYLLVNLQTLCLDQ-S 534 (790)
Q Consensus 457 l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~~-~ 534 (790)
+...+..+.++|.. .|.-.+.+.+..|.+. .||+..|+.+++||.|||++|+|+.| |..|..+..|-.|-+.+ |
T Consensus 51 VdCr~~GL~eVP~~--LP~~tveirLdqN~I~--~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 51 VDCRGKGLTEVPAN--LPPETVEIRLDQNQIS--SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred EEccCCCcccCccc--CCCcceEEEeccCCcc--cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence 33344555666653 4556677777888888 89999999999999999999999987 89999999988877666 8
Q ss_pred cccccchhhhhccCcccEEeccCCCCccc-chhhhcccccceecCCccccccccCchhhccccccceEecccCC
Q 039180 535 ILRDIDIAIIGKLKNLKILSFVRSDIVQL-PKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCP 607 (790)
Q Consensus 535 ~l~~l~p~~i~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 607 (790)
+|+.+.-..|++|..|+.|.+.-|++.-+ ...+..|++|..|.+.+| .+..++.+.+..+..++++.+..|.
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCc
Confidence 89999667789999999999999988844 456889999999999997 7888888778899999999887665
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.54 E-value=2.5e-16 Score=138.42 Aligned_cols=158 Identities=23% Similarity=0.314 Sum_probs=131.7
Q ss_pred cCCceEEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceecC
Q 039180 499 GVKKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSDL 578 (790)
Q Consensus 499 ~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l 578 (790)
.+.++..|.|++|.++.+|..+..+.+|+.|++++|+++.+ |.+++.|++|+.|++.-|++..+|.+++.++.|+.|++
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~l-p~~issl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEEL-PTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhc-ChhhhhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 67788889999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CccccccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCcccccccccee
Q 039180 579 TDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFLTQKLERF 658 (790)
Q Consensus 579 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L 658 (790)
+.|+.-+...|+.|..|+.|+-|+++.|.+. ..+..++++++|+.|.+..|..-.+|..+
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe------------~lp~dvg~lt~lqil~lrdndll~lpkei-------- 169 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFE------------ILPPDVGKLTNLQILSLRDNDLLSLPKEI-------- 169 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcc------------cCChhhhhhcceeEEeeccCchhhCcHHH--------
Confidence 9885444444455778899999999988763 34667888888888888888776676663
Q ss_pred EEEecCCCCCCCccccCCccCeeeccceeccee
Q 039180 659 KISIGNESFMPSQSVELPNLEALELCAINVDKI 691 (790)
Q Consensus 659 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l 691 (790)
+.+..|++|++.+|.++-+
T Consensus 170 --------------g~lt~lrelhiqgnrl~vl 188 (264)
T KOG0617|consen 170 --------------GDLTRLRELHIQGNRLTVL 188 (264)
T ss_pred --------------HHHHHHHHHhcccceeeec
Confidence 4566777777777776643
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.53 E-value=8.3e-15 Score=169.60 Aligned_cols=298 Identities=24% Similarity=0.280 Sum_probs=205.0
Q ss_pred cccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCcc--ccCCChh-hhhccccceeeccCcc-ccc
Q 039180 463 RINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKML--LSSLPSS-IYLLVNLQTLCLDQSI-LRD 538 (790)
Q Consensus 463 ~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~--~~~lp~~-~~~l~~L~~L~L~~~~-l~~ 538 (790)
....+|........|.....++.... ++.. ..++.|+.|-+.+|. +..++.. |..++.|++|||++|. +..
T Consensus 512 ~~~~~~~~~~~~~~rr~s~~~~~~~~---~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~ 586 (889)
T KOG4658|consen 512 GLSEIPQVKSWNSVRRMSLMNNKIEH---IAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK 586 (889)
T ss_pred CccccccccchhheeEEEEeccchhh---ccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc
Confidence 44446766667778888887776543 5554 356689999999886 5666544 6789999999999887 677
Q ss_pred cchhhhhccCcccEEeccCCCCcccchhhhcccccceecCCccccccccCchhhccccccceEecccCCccchhhccccc
Q 039180 539 IDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSE 618 (790)
Q Consensus 539 l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 618 (790)
+ |.+|+.|.+|++|+++++.+..+|.++++|++|.+|++..+..+..+ ++....|++|++|.+......
T Consensus 587 L-P~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~--------- 655 (889)
T KOG4658|consen 587 L-PSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALS--------- 655 (889)
T ss_pred C-ChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccc---------
Confidence 7 99999999999999999999999999999999999999998666655 555677999999998765421
Q ss_pred ccccccccccCCCCCcEEEEEecCCCCCCccccccccc----eeEEEecCCCCCCCccccCCccCeeeccceecceeccc
Q 039180 619 RSNSSLDELMNLPWLTTLEIDVKNDSILPESFLTQKLE----RFKISIGNESFMPSQSVELPNLEALELCAINVDKIWHY 694 (790)
Q Consensus 619 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~ 694 (790)
.+.....++.++.+|+.+.+.......+-....+..|. .+.+..+...........+++|+.|.+.+|...+....
T Consensus 656 ~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~ 735 (889)
T KOG4658|consen 656 NDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIE 735 (889)
T ss_pred cchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcc
Confidence 23445667788888888888655431111222233333 33333333344445677899999999999976543111
Q ss_pred CCCccccc-cCCCccEEeeccCCcccccchhHHHhccccccEEeeccCchhhhHhhcCCCCCCC--CcccCCcccee-ec
Q 039180 695 NLLPFMLS-RFQSLTRLIVRSCPKLKYIFSASMIQNFELLRELSIADCRGLREIISKDRADHVT--PCFVFPQMTTL-RL 770 (790)
Q Consensus 695 ~~~~~~~~-~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~--~~~~~p~L~~L-~l 770 (790)
........ .|+++..+.+.+|..+.+..+ ....|+|+.|.+.+|+.++++.......... ....|+++..+ .+
T Consensus 736 ~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~---~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~ 812 (889)
T KOG4658|consen 736 WEESLIVLLCFPNLSKVSILNCHMLRDLTW---LLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRML 812 (889)
T ss_pred cccccchhhhHHHHHHHHhhccccccccch---hhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceee
Confidence 11111122 267888888899988877643 3466999999999999888877644332111 13345555555 34
Q ss_pred ccccccccc
Q 039180 771 EILPELKCY 779 (790)
Q Consensus 771 ~~c~~L~~l 779 (790)
.+.+.+.++
T Consensus 813 ~~l~~l~~i 821 (889)
T KOG4658|consen 813 CSLGGLPQL 821 (889)
T ss_pred ecCCCCcee
Confidence 444444444
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.41 E-value=1.1e-13 Score=146.75 Aligned_cols=238 Identities=20% Similarity=0.125 Sum_probs=148.8
Q ss_pred hhccCCceEEEEecCcccc-----CCChhhhhccccceeeccCccccc------cchhhhhccCcccEEeccCCCCc-cc
Q 039180 496 FFKGVKKLRVVALVKMLLS-----SLPSSIYLLVNLQTLCLDQSILRD------IDIAIIGKLKNLKILSFVRSDIV-QL 563 (790)
Q Consensus 496 ~~~~l~~L~~L~L~~~~~~-----~lp~~~~~l~~L~~L~L~~~~l~~------l~p~~i~~l~~L~~L~L~~~~l~-~l 563 (790)
++..+..|++|+++++.++ .++..+...++|++|+++++.+.. ..+..+.++++|++|++++|.+. ..
T Consensus 18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 97 (319)
T cd00116 18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG 97 (319)
T ss_pred HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence 4567777888999888874 356666777788888888887652 12455677888999999888776 44
Q ss_pred chhhhcccc---cceecCCccccccccC----chhhccc-cccceEecccCCccchhhcccccccccccccccCCCCCcE
Q 039180 564 PKALGELTK---LRLSDLTDCFHLKVIA----PNVISSL-TRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTT 635 (790)
Q Consensus 564 p~~l~~l~~---L~~L~l~~~~~l~~~~----~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 635 (790)
+..+..+.+ |++|++++|. +...+ ...+..+ ++|+.|++++|.+.... .......+..+++|+.
T Consensus 98 ~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~-------~~~~~~~~~~~~~L~~ 169 (319)
T cd00116 98 CGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS-------CEALAKALRANRDLKE 169 (319)
T ss_pred HHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH-------HHHHHHHHHhCCCcCE
Confidence 555555555 8889888873 43211 1224556 78889998888875211 1123445666778888
Q ss_pred EEEEecCCCCC-----Cccc-cccccceeEEEecCCCCCC-----CccccCCccCeeeccceecceecccCCCccccccC
Q 039180 636 LEIDVKNDSIL-----PESF-LTQKLERFKISIGNESFMP-----SQSVELPNLEALELCAINVDKIWHYNLLPFMLSRF 704 (790)
Q Consensus 636 L~l~~~~~~~~-----~~~~-~~~~L~~L~l~~~~~~~~~-----~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l 704 (790)
|++++|.+... +..+ .+++|+.|++++|.+.... ..+..+++|+.|++++|.+++..............
T Consensus 170 L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~ 249 (319)
T cd00116 170 LNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPN 249 (319)
T ss_pred EECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccC
Confidence 88888775421 1111 1347888888877654322 13455678888888888766421000000001124
Q ss_pred CCccEEeeccCCcccccc---hhHHHhccccccEEeeccCc
Q 039180 705 QSLTRLIVRSCPKLKYIF---SASMIQNFELLRELSIADCR 742 (790)
Q Consensus 705 ~~L~~L~L~~~~~l~~~~---~~~~~~~l~~L~~L~l~~c~ 742 (790)
+.|+.|++++|. +++.. ....+..+++|+.|+++++.
T Consensus 250 ~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 250 ISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred CCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 788888888883 43211 12334556788888888864
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.38 E-value=2.7e-13 Score=143.79 Aligned_cols=251 Identities=20% Similarity=0.111 Sum_probs=170.4
Q ss_pred EEEecCcccc--CCChhhhhccccceeeccCcccccc----chhhhhccCcccEEeccCCCCcc-------cchhhhccc
Q 039180 505 VVALVKMLLS--SLPSSIYLLVNLQTLCLDQSILRDI----DIAIIGKLKNLKILSFVRSDIVQ-------LPKALGELT 571 (790)
Q Consensus 505 ~L~L~~~~~~--~lp~~~~~l~~L~~L~L~~~~l~~l----~p~~i~~l~~L~~L~L~~~~l~~-------lp~~l~~l~ 571 (790)
.|+|..+.++ ..+..+..+.+|+.|++++|.++.. .+..+...++|++|+++++.+.. ++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 3667777665 4566778888999999999998442 25556678889999999986652 345677888
Q ss_pred ccceecCCccccccccCchhhccccc---cceEecccCCccchhhcccccccccccccccCC-CCCcEEEEEecCCCCC-
Q 039180 572 KLRLSDLTDCFHLKVIAPNVISSLTR---LEELYMGNCPIEWEVERANSERSNSSLDELMNL-PWLTTLEIDVKNDSIL- 646 (790)
Q Consensus 572 ~L~~L~l~~~~~l~~~~~~~l~~l~~---L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~- 646 (790)
+|+.|++++|. +....+..+..+.+ |++|++++|.+.... .......+..+ ++|+.|++++|.+...
T Consensus 82 ~L~~L~l~~~~-~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~-------~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 153 (319)
T cd00116 82 GLQELDLSDNA-LGPDGCGVLESLLRSSSLQELKLNNNGLGDRG-------LRLLAKGLKDLPPALEKLVLGRNRLEGAS 153 (319)
T ss_pred ceeEEEccCCC-CChhHHHHHHHHhccCcccEEEeeCCccchHH-------HHHHHHHHHhCCCCceEEEcCCCcCCchH
Confidence 99999999984 43223333555555 999999999874211 11223455666 8999999999986531
Q ss_pred ----Cccc-cccccceeEEEecCCCCCC-----CccccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCC
Q 039180 647 ----PESF-LTQKLERFKISIGNESFMP-----SQSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCP 716 (790)
Q Consensus 647 ----~~~~-~~~~L~~L~l~~~~~~~~~-----~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~ 716 (790)
...+ .+++|+.|++++|.+.... .....+++|+.|++++|.+++... ...+..+..+++|+.|++++|+
T Consensus 154 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 154 CEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA-SALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH-HHHHHHhcccCCCCEEecCCCc
Confidence 1111 2568999999998876321 123445799999999998764311 1123345678999999999994
Q ss_pred cccccchhHHHhc----cccccEEeeccCchhh-----hHhhcCCCCCCCCcccCCccceeeccccc
Q 039180 717 KLKYIFSASMIQN----FELLRELSIADCRGLR-----EIISKDRADHVTPCFVFPQMTTLRLEILP 774 (790)
Q Consensus 717 ~l~~~~~~~~~~~----l~~L~~L~l~~c~~l~-----~~~~~~~~~~~~~~~~~p~L~~L~l~~c~ 774 (790)
+++......... .+.|+.|++++|. ++ .+.... ..+++|+++++++++
T Consensus 233 -l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~--------~~~~~L~~l~l~~N~ 289 (319)
T cd00116 233 -LTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEVL--------AEKESLLELDLRGNK 289 (319)
T ss_pred -CchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHH--------hcCCCccEEECCCCC
Confidence 555333333333 3799999999984 32 222211 236899999998754
No 25
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.37 E-value=2.5e-11 Score=147.68 Aligned_cols=273 Identities=14% Similarity=0.208 Sum_probs=173.5
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCCCch--------------hH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQ-SPDIKQIQQEIAEKLGLELSE--------------EA 191 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~--------------~~ 191 (790)
..+++.|+|++|.||||++.++... ++.++|+++.. ..+...+...++..++..... ..
T Consensus 31 ~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 104 (903)
T PRK04841 31 NYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYAS 104 (903)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCC
Confidence 4789999999999999999998853 22589999964 456666666666666321110 11
Q ss_pred HHHHHHHHHHHHHc-CCcEEEEEeCCCCccC---ccccCccCCCCCCCcEEEEEeCChhHH---hhhCCCceEEcc----
Q 039180 192 EFRRASRMFERLKN-EKKILLILDNTWKSLD---LGTIGIPFGVEHRGCKLLFTTRDLDVL---IRMGSEKNFSIG---- 260 (790)
Q Consensus 192 ~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~~---~~~l~~~~~~~~~gs~iliTtR~~~v~---~~~~~~~~~~l~---- 260 (790)
....+..+...+.. +.+++||+||+....+ .+.+...+.....+.++|||||...-. ..........+.
T Consensus 105 ~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l 184 (903)
T PRK04841 105 LSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQL 184 (903)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhC
Confidence 11233445555553 5789999999955421 122322233345567898999984211 111122345555
Q ss_pred CCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHHHHHHHHHHhcCChhHHHHHHHHhcCCCCCCcCCCCchhh
Q 039180 261 ILNEQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIALTIVVKALRNKELPEWKNALQELQMPSETSFDEGVPAEA 340 (790)
Q Consensus 261 ~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~ 340 (790)
+|+.+|+.++|....+... ..+.+.+|.+.++|.|+++..++..+...... -......+.. . .+..+
T Consensus 185 ~f~~~e~~~ll~~~~~~~~----~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~~~-----~---~~~~~ 251 (903)
T PRK04841 185 AFDHQEAQQFFDQRLSSPI----EAAESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARRLAG-----I---NASHL 251 (903)
T ss_pred CCCHHHHHHHHHhccCCCC----CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHhhcC-----C---CchhH
Confidence 8999999999987665322 23457889999999999999988777543210 0011111100 0 01122
Q ss_pred hhhH-HHHHHHHhHHhHHHHhhhcccCCCCHHHHHHHHhhcCccchHHHHHHHHHHHHHHHhccceee-e-CCcCeEEeC
Q 039180 341 YSTI-ELSYKYLGKQLKETILLCSLIAPTSIMDLINYTMGFGVLKLEEAHNKLHAWVRQLRDSCLLLV-D-GSSKFFSMH 417 (790)
Q Consensus 341 ~~~l-~~sy~~L~~~~k~~f~~~s~fp~~~~~~Li~~w~~eg~~~~~~~~~~~~~~~~~L~~~sll~~-~-~~~~~~~~h 417 (790)
...+ .-.++.||+..+..+...|+++.++..-+-... | . ....+.+++|.+.+++.. . +....|+.|
T Consensus 252 ~~~l~~~v~~~l~~~~~~~l~~~a~~~~~~~~l~~~l~---~---~----~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H 321 (903)
T PRK04841 252 SDYLVEEVLDNVDLETRHFLLRCSVLRSMNDALIVRVT---G---E----ENGQMRLEELERQGLFIQRMDDSGEWFRYH 321 (903)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccccCCHHHHHHHc---C---C----CcHHHHHHHHHHCCCeeEeecCCCCEEehh
Confidence 4443 334789999999999999999988754333221 1 1 122457888999999754 3 344689999
Q ss_pred hhhHHHHHHHh
Q 039180 418 DVLRDVAISIA 428 (790)
Q Consensus 418 ~li~~~~~~~~ 428 (790)
++++++.+...
T Consensus 322 ~L~r~~l~~~l 332 (903)
T PRK04841 322 PLFASFLRHRC 332 (903)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.24 E-value=1.1e-12 Score=130.68 Aligned_cols=276 Identities=20% Similarity=0.230 Sum_probs=190.2
Q ss_pred ceEecCCccccCCCcccccceeEEEeecccccCCCCcc--CccccceeecccCCCCCCCCCChhhhccCCceEEEEecC-
Q 039180 434 AFVVRNKNMWEWPNPDALKKYLAISLINSRINDIPEGL--ESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVK- 510 (790)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~--~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~- 510 (790)
...+++..+.++| ...+.....+.+..|.+..||+.. ..+++|.+-+..| .+. .|.++.|.+++.|-.|-+-+
T Consensus 50 ~VdCr~~GL~eVP-~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is--~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 50 IVDCRGKGLTEVP-ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NIS--FIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred eEEccCCCcccCc-ccCCCcceEEEeccCCcccCChhhccchhhhceeccccc-chh--hcChHhhhhhHhhhHHHhhcC
Confidence 3444555666654 456778888999999999999765 5666777655554 444 57778889999887776655
Q ss_pred ccccCCCh-hhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccch-hhhcccccceecCCccccccc--
Q 039180 511 MLLSSLPS-SIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPK-ALGELTKLRLSDLTDCFHLKV-- 586 (790)
Q Consensus 511 ~~~~~lp~-~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~~~~l~~-- 586 (790)
|+|+.+|. .|+.|..|+.|.+.-|.+.-+....+..|++|..|.+..|.+..++. .+..+..++++.+..|..+..
T Consensus 126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc
Confidence 89999875 57789999999999999887767888999999999999998888887 678888888888876631110
Q ss_pred cC---------chhhccccccceEecccCCccc-----------hhh----cccccccccccccccCCCCCcEEEEEecC
Q 039180 587 IA---------PNVISSLTRLEELYMGNCPIEW-----------EVE----RANSERSNSSLDELMNLPWLTTLEIDVKN 642 (790)
Q Consensus 587 ~~---------~~~l~~l~~L~~L~l~~~~~~~-----------~~~----~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 642 (790)
+| +..++...-..-..+.+..+.. ..+ ............-+..+++|+.|++++|.
T Consensus 206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~ 285 (498)
T KOG4237|consen 206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK 285 (498)
T ss_pred cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence 00 0001111111111111111000 000 00000111122347789999999999999
Q ss_pred CCCCCcccc--ccccceeEEEecCCCCCCC-ccccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCCcc
Q 039180 643 DSILPESFL--TQKLERFKISIGNESFMPS-QSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKL 718 (790)
Q Consensus 643 ~~~~~~~~~--~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l 718 (790)
++.+....+ ...++.|.|..|.+..... .+..+..|+.|+|++|+++.+ .|..+..+..|.+|++-.|+..
T Consensus 286 i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~-----~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 286 ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTV-----APGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEE-----ecccccccceeeeeehccCccc
Confidence 887765543 6789999999998877665 677889999999999999876 3555778889999998776643
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.19 E-value=7.2e-13 Score=138.02 Aligned_cols=172 Identities=23% Similarity=0.326 Sum_probs=101.1
Q ss_pred eeecccCCCCCCCCCChhhhccCCceEEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccC
Q 039180 478 FLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVR 557 (790)
Q Consensus 478 ~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~ 557 (790)
+...++.|.+. .+|..+ ..|-.|..+.|..|.+..+|..++++..|.+|+|+.|++..+ |..++.|+ |+.|-+++
T Consensus 78 ~~aDlsrNR~~--elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~l-p~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 78 VFADLSRNRFS--ELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHL-PDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhccccccc--cCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcC-ChhhhcCc-ceeEEEec
Confidence 34445555555 555544 455566666666666666666666666666666666666666 66665554 66666666
Q ss_pred CCCcccchhhhcccccceecCCccccccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEE
Q 039180 558 SDIVQLPKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLE 637 (790)
Q Consensus 558 ~~l~~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 637 (790)
|+++.+|..++.+..|.+|+.+.| .+..+|.. ++.+.+|+.|++..|++. ..+.++..| .|..|+
T Consensus 153 Nkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsq-l~~l~slr~l~vrRn~l~------------~lp~El~~L-pLi~lD 217 (722)
T KOG0532|consen 153 NKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQ-LGYLTSLRDLNVRRNHLE------------DLPEELCSL-PLIRLD 217 (722)
T ss_pred CccccCCcccccchhHHHhhhhhh-hhhhchHH-hhhHHHHHHHHHhhhhhh------------hCCHHHhCC-ceeeee
Confidence 666666666666666666666665 45555554 566666666666666542 234455533 355666
Q ss_pred EEecCCCCCCcccc-ccccceeEEEecCCCCCC
Q 039180 638 IDVKNDSILPESFL-TQKLERFKISIGNESFMP 669 (790)
Q Consensus 638 l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~ 669 (790)
+++|.+..+|..+. +..|++|.|.+|.+..-|
T Consensus 218 fScNkis~iPv~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 218 FSCNKISYLPVDFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred cccCceeecchhhhhhhhheeeeeccCCCCCCh
Confidence 66666655555543 455555555555544433
No 28
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.17 E-value=2.5e-09 Score=110.14 Aligned_cols=178 Identities=16% Similarity=0.205 Sum_probs=115.3
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHH----HHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASR----MFERL 203 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~----l~~~l 203 (790)
.+++.|+|++|+||||+++.+++...... + .++|+ +....+..+++..|+..++.+............ +....
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~ 119 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQF 119 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 46889999999999999999998865321 1 22333 334457788999999998876543322222222 33334
Q ss_pred HcCCcEEEEEeCCCCcc--CccccCc---cCCCCCCCcEEEEEeCChhHHhhhC----------CCceEEccCCCHHHHH
Q 039180 204 KNEKKILLILDNTWKSL--DLGTIGI---PFGVEHRGCKLLFTTRDLDVLIRMG----------SEKNFSIGILNEQEAW 268 (790)
Q Consensus 204 ~~~kr~LlVlDdv~~~~--~~~~l~~---~~~~~~~gs~iliTtR~~~v~~~~~----------~~~~~~l~~L~~~~~~ 268 (790)
..+++.+||+||++... .++.+.. ..........|++|.... ....+. ....+++++++.+|..
T Consensus 120 ~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~ 198 (269)
T TIGR03015 120 AAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETR 198 (269)
T ss_pred hCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHH
Confidence 45788999999998763 3333321 111122233456666543 221111 1346889999999999
Q ss_pred HHHHHHhCCC---CCCcchHHHHHHHHHHhcCCcHHHHHHHHHH
Q 039180 269 RLFKIIAGAY---VENRELKSTATSVAKACRGLPIALTIVVKAL 309 (790)
Q Consensus 269 ~Lf~~~~~~~---~~~~~~~~~~~~i~~~~~glPlai~~~~~~l 309 (790)
+++...+... ....-..+..+.|++.++|.|..|..++..+
T Consensus 199 ~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 199 EYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9998776421 1222345789999999999999999999876
No 29
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.16 E-value=2.6e-10 Score=125.62 Aligned_cols=278 Identities=19% Similarity=0.205 Sum_probs=182.2
Q ss_pred cCCceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCCCchhH-----------
Q 039180 124 EDIWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQS-PDIKQIQQEIAEKLGLELSEEA----------- 191 (790)
Q Consensus 124 ~~~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~----------- 191 (790)
...+.+++.|..++|.||||++.+.+..... -..+.|.++++. .++......++..++...+...
T Consensus 33 ~~~~~RL~li~APAGfGKttl~aq~~~~~~~---~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~ 109 (894)
T COG2909 33 RANDYRLILISAPAGFGKTTLLAQWRELAAD---GAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQ 109 (894)
T ss_pred cCCCceEEEEeCCCCCcHHHHHHHHHHhcCc---ccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcc
Confidence 3446899999999999999999999884322 356899999764 5688888888887764332211
Q ss_pred ---HHHHHHHHHHHHHc-CCcEEEEEeCCC---CccCccccCccCCCCCCCcEEEEEeCChhHHhh---hCCCceEEccC
Q 039180 192 ---EFRRASRMFERLKN-EKKILLILDNTW---KSLDLGTIGIPFGVEHRGCKLLFTTRDLDVLIR---MGSEKNFSIGI 261 (790)
Q Consensus 192 ---~~~~~~~l~~~l~~-~kr~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~iliTtR~~~v~~~---~~~~~~~~l~~ 261 (790)
-...+..++..+.+ .++..+||||.- ++.--..+...+.....+-.+|||||+..-... --.....+++.
T Consensus 110 ~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~ 189 (894)
T COG2909 110 YVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGS 189 (894)
T ss_pred cccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcCh
Confidence 11234455555543 467999999963 332222333344445678899999998643222 11223344433
Q ss_pred ----CCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHHHHHHHHHHhcC-ChhHHHHHHHHhcCCCCCCcCCCC
Q 039180 262 ----LNEQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIALTIVVKALRNK-ELPEWKNALQELQMPSETSFDEGV 336 (790)
Q Consensus 262 ----L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~-~~~~w~~~l~~l~~~~~~~~~~~~ 336 (790)
|+.+|+.++|....+... .+...+.+.+...|.+-|+..++=.+++. +.+.- ...+. +.
T Consensus 190 ~~Lrf~~eE~~~fl~~~~~l~L----d~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~---~~~Ls---------G~ 253 (894)
T COG2909 190 EELRFDTEEAAAFLNDRGSLPL----DAADLKALYDRTEGWAAALQLIALALRNNTSAEQS---LRGLS---------GA 253 (894)
T ss_pred HhhcCChHHHHHHHHHcCCCCC----ChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHH---hhhcc---------ch
Confidence 789999999988664322 23457889999999999999999888833 22211 11110 00
Q ss_pred chhhhh-hHHHHHHHHhHHhHHHHhhhcccCCCCHHHHHHHHhhcCccchHHHHHHHHHHHHHHHhccceee--eCCcCe
Q 039180 337 PAEAYS-TIELSYKYLGKQLKETILLCSLIAPTSIMDLINYTMGFGVLKLEEAHNKLHAWVRQLRDSCLLLV--DGSSKF 413 (790)
Q Consensus 337 ~~~~~~-~l~~sy~~L~~~~k~~f~~~s~fp~~~~~~Li~~w~~eg~~~~~~~~~~~~~~~~~L~~~sll~~--~~~~~~ 413 (790)
..-+.. ...--++.||+++|.-++-||+++.+.-+ |+..-.+ ++...+.+++|.+++++.. .+....
T Consensus 254 ~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f~~e-L~~~Ltg---------~~ng~amLe~L~~~gLFl~~Ldd~~~W 323 (894)
T COG2909 254 ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRFNDE-LCNALTG---------EENGQAMLEELERRGLFLQRLDDEGQW 323 (894)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhhHH-HHHHHhc---------CCcHHHHHHHHHhCCCceeeecCCCce
Confidence 000111 23445788999999999999999865543 3332221 1234458899999998874 477889
Q ss_pred EEeChhhHHHHHHHhhh
Q 039180 414 FSMHDVLRDVAISIACR 430 (790)
Q Consensus 414 ~~~h~li~~~~~~~~~~ 430 (790)
|+.|.+..+|.+.....
T Consensus 324 fryH~LFaeFL~~r~~~ 340 (894)
T COG2909 324 FRYHHLFAEFLRQRLQR 340 (894)
T ss_pred eehhHHHHHHHHhhhcc
Confidence 99999999999876544
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.16 E-value=2.5e-12 Score=134.04 Aligned_cols=196 Identities=23% Similarity=0.306 Sum_probs=143.2
Q ss_pred ecCCccccCCCcc---cccceeEEEeecccccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccc
Q 039180 437 VRNKNMWEWPNPD---ALKKYLAISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLL 513 (790)
Q Consensus 437 ~~~~~~~~~~~~~---~~~~l~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~ 513 (790)
.++.++++++... ........+++.|....+|...........+++..|.+. .+|..+ .++..|.+|+|+.|++
T Consensus 57 Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r--~ip~~i-~~L~~lt~l~ls~Nql 133 (722)
T KOG0532|consen 57 LSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR--TIPEAI-CNLEALTFLDLSSNQL 133 (722)
T ss_pred cccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccce--ecchhh-hhhhHHHHhhhccchh
Confidence 3444444444332 234455667778888888876644444444455555555 577765 6888888888888888
Q ss_pred cCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceecCCccccccccCchhhc
Q 039180 514 SSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSDLTDCFHLKVIAPNVIS 593 (790)
Q Consensus 514 ~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~ 593 (790)
..+|..++.|+ |+.|-+++|+++.+ |..++.+..|..||.+.|.+..+|..++.+.+|+.|++..| .+..+|+. +.
T Consensus 134 S~lp~~lC~lp-Lkvli~sNNkl~~l-p~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn-~l~~lp~E-l~ 209 (722)
T KOG0532|consen 134 SHLPDGLCDLP-LKVLIVSNNKLTSL-PEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEE-LC 209 (722)
T ss_pred hcCChhhhcCc-ceeEEEecCccccC-CcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh-hhhhCCHH-Hh
Confidence 88888887765 78888888888887 88888888888888888888888888888888888888887 66777776 55
Q ss_pred cccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCccccc
Q 039180 594 SLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFLT 652 (790)
Q Consensus 594 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 652 (790)
.| .|..|+++.|++. .++-.|.+++.|+.|-|.+|.+..-|..+..
T Consensus 210 ~L-pLi~lDfScNkis------------~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~ 255 (722)
T KOG0532|consen 210 SL-PLIRLDFSCNKIS------------YLPVDFRKMRHLQVLQLENNPLQSPPAQICE 255 (722)
T ss_pred CC-ceeeeecccCcee------------ecchhhhhhhhheeeeeccCCCCCChHHHHh
Confidence 33 4778888888763 3466788888888888888888877776653
No 31
>PF05729 NACHT: NACHT domain
Probab=99.16 E-value=3.6e-10 Score=107.12 Aligned_cols=142 Identities=20% Similarity=0.274 Sum_probs=93.7
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccC----CCEEEEEEeCCCCCHH---HHHHHHHHHhCCCCchhHHHHHHHHHHH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDEL----YDMVVFSEVTQSPDIK---QIQQEIAEKLGLELSEEAEFRRASRMFE 201 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~l~~ 201 (790)
+++.|+|.+|+||||+++.++.+...... +..++|++........ .+...|..+.......... ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-----~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEE-----LLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHH-----HHHH
Confidence 58999999999999999999998766543 3467777776544433 3444444443322111111 2333
Q ss_pred HHHcCCcEEEEEeCCCCccC-c--------cc-cCccCCC-CCCCcEEEEEeCChhH---HhhhCCCceEEccCCCHHHH
Q 039180 202 RLKNEKKILLILDNTWKSLD-L--------GT-IGIPFGV-EHRGCKLLFTTRDLDV---LIRMGSEKNFSIGILNEQEA 267 (790)
Q Consensus 202 ~l~~~kr~LlVlDdv~~~~~-~--------~~-l~~~~~~-~~~gs~iliTtR~~~v---~~~~~~~~~~~l~~L~~~~~ 267 (790)
.....++++||+|++++... . .. +...+.. ..++.+++||+|.... .........+.+.+|++++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 33456899999999987643 1 11 2122222 3568999999999665 33345556899999999999
Q ss_pred HHHHHHHh
Q 039180 268 WRLFKIIA 275 (790)
Q Consensus 268 ~~Lf~~~~ 275 (790)
.++++++.
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99998765
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=8e-12 Score=126.54 Aligned_cols=205 Identities=21% Similarity=0.250 Sum_probs=120.0
Q ss_pred hhccccceeeccCccccccch--hhhhccCcccEEeccCCCCc---ccchhhhcccccceecCCccccccccCchhhccc
Q 039180 521 YLLVNLQTLCLDQSILRDIDI--AIIGKLKNLKILSFVRSDIV---QLPKALGELTKLRLSDLTDCFHLKVIAPNVISSL 595 (790)
Q Consensus 521 ~~l~~L~~L~L~~~~l~~l~p--~~i~~l~~L~~L~L~~~~l~---~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l 595 (790)
.++..|+...|.++.+... + .....|++++.|||+.|-+. .+-..+..|++|+.|+++.|..........-..+
T Consensus 118 sn~kkL~~IsLdn~~V~~~-~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDA-GIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccccc-chhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 4556666666666665543 2 24456666666666666333 3333445666777777766632111111112245
Q ss_pred cccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCC-CCCC-ccccccccceeEEEecCCCCCCC--c
Q 039180 596 TRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKND-SILP-ESFLTQKLERFKISIGNESFMPS--Q 671 (790)
Q Consensus 596 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~-~~~~~~~L~~L~l~~~~~~~~~~--~ 671 (790)
++|+.|.++.|.++|.- +...+..+|+|+.|.+..|.. .... ....++.|+.|+|++|++...+. .
T Consensus 197 ~~lK~L~l~~CGls~k~----------V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~ 266 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKD----------VQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYK 266 (505)
T ss_pred hhhheEEeccCCCCHHH----------HHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccc
Confidence 66777777777765322 233445567777777776641 1111 11125667777777777665553 5
Q ss_pred cccCCccCeeeccceecceecccCCCccc-----cccCCCccEEeeccCCcccccchhHHHhccccccEEeeccC
Q 039180 672 SVELPNLEALELCAINVDKIWHYNLLPFM-----LSRFQSLTRLIVRSCPKLKYIFSASMIQNFELLRELSIADC 741 (790)
Q Consensus 672 ~~~l~~L~~L~l~~~~l~~l~~~~~~~~~-----~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l~~c 741 (790)
.+.+|.|+.|.++.|+++++. . |+. ...+++|+.|++..| .+.+++....+..+++|+.|.+...
T Consensus 267 ~~~l~~L~~Lnls~tgi~si~---~-~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 267 VGTLPGLNQLNLSSTGIASIA---E-PDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred cccccchhhhhccccCcchhc---C-CCccchhhhcccccceeeecccC-ccccccccchhhccchhhhhhcccc
Confidence 567788888888888777652 1 221 356788888888888 4666655556666777777776543
No 33
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.06 E-value=6.3e-08 Score=105.67 Aligned_cols=263 Identities=14% Similarity=0.103 Sum_probs=156.2
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC-Cc--hhHHHHHHHHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLE-LS--EEAEFRRASRMFERLK 204 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-~~--~~~~~~~~~~l~~~l~ 204 (790)
...+.|+|++|+|||++++.+++........-.++++++....+...++..|++++... .+ ..+..+....+.+.+.
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 134 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLD 134 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 34578999999999999999999876543234567888887788889999999998652 11 1122344555666665
Q ss_pred c-CCcEEEEEeCCCCcc---C---ccccCccCCCCCCCcE--EEEEeCChhHHhhhC-------CCceEEccCCCHHHHH
Q 039180 205 N-EKKILLILDNTWKSL---D---LGTIGIPFGVEHRGCK--LLFTTRDLDVLIRMG-------SEKNFSIGILNEQEAW 268 (790)
Q Consensus 205 ~-~kr~LlVlDdv~~~~---~---~~~l~~~~~~~~~gs~--iliTtR~~~v~~~~~-------~~~~~~l~~L~~~~~~ 268 (790)
. ++..+||||+++... . +..+...+ ....+++ +|.++....+..... ....+.+.+++.++..
T Consensus 135 ~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~-~~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~ 213 (394)
T PRK00411 135 ERDRVLIVALDDINYLFEKEGNDVLYSLLRAH-EEYPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIF 213 (394)
T ss_pred hcCCEEEEEECCHhHhhccCCchHHHHHHHhh-hccCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHH
Confidence 3 466899999998753 1 12221111 1112333 566666543333211 1247899999999999
Q ss_pred HHHHHHhCCCC-CCcchHHHHHHHHHHh----cCCcHHHHHHHHHHh-----cC---ChhHHHHHHHHhcCCCCCCcCCC
Q 039180 269 RLFKIIAGAYV-ENRELKSTATSVAKAC----RGLPIALTIVVKALR-----NK---ELPEWKNALQELQMPSETSFDEG 335 (790)
Q Consensus 269 ~Lf~~~~~~~~-~~~~~~~~~~~i~~~~----~glPlai~~~~~~l~-----~~---~~~~w~~~l~~l~~~~~~~~~~~ 335 (790)
+++..++.... ...-.++..+.|++.+ |..+.|+.++-.+.. +. +.+..+.+.+...
T Consensus 214 ~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~---------- 283 (394)
T PRK00411 214 DILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSE---------- 283 (394)
T ss_pred HHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH----------
Confidence 99988763211 1111233444454444 447777776654322 11 4556666655531
Q ss_pred CchhhhhhHHHHHHHHhHHhHHHHhhhccc-----CCCCHHHHHHH--Hhh--cCccchHHHHHHHHHHHHHHHhcccee
Q 039180 336 VPAEAYSTIELSYKYLGKQLKETILLCSLI-----APTSIMDLINY--TMG--FGVLKLEEAHNKLHAWVRQLRDSCLLL 406 (790)
Q Consensus 336 ~~~~~~~~l~~sy~~L~~~~k~~f~~~s~f-----p~~~~~~Li~~--w~~--eg~~~~~~~~~~~~~~~~~L~~~sll~ 406 (790)
.....-.+..||.+.|..+..++.. ..+...++... .++ .|.-+. ....+.++++.|...+++.
T Consensus 284 -----~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~~--~~~~~~~~l~~L~~~glI~ 356 (394)
T PRK00411 284 -----IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEPR--THTRFYEYINKLDMLGIIN 356 (394)
T ss_pred -----HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCcC--cHHHHHHHHHHHHhcCCeE
Confidence 2234556788888887666554432 13444444322 111 121111 2355677999999999998
Q ss_pred ee
Q 039180 407 VD 408 (790)
Q Consensus 407 ~~ 408 (790)
..
T Consensus 357 ~~ 358 (394)
T PRK00411 357 TR 358 (394)
T ss_pred EE
Confidence 54
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.02 E-value=5.4e-11 Score=114.46 Aligned_cols=181 Identities=19% Similarity=0.198 Sum_probs=131.8
Q ss_pred cceeEEEeecccccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCCChhhhhccccceeec
Q 039180 452 KKYLAISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLPSSIYLLVNLQTLCL 531 (790)
Q Consensus 452 ~~l~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L 531 (790)
+++..+++.+..+...|.........-...-......|. +.. .......|..|||++|.|+.+..++.-++.++.|++
T Consensus 237 ptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~-~~~-~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~l 314 (490)
T KOG1259|consen 237 PTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGS-ALV-SADTWQELTELDLSGNLITQIDESVKLAPKLRRLIL 314 (490)
T ss_pred chhheeeeecccccccccccchhhhcCccCCCCCccCCc-eEE-ecchHhhhhhccccccchhhhhhhhhhccceeEEec
Confidence 456667777666655544332222222211111111111 111 123456789999999999999999999999999999
Q ss_pred cCccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceecCCccccccccCchhhccccccceEecccCCccch
Q 039180 532 DQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWE 611 (790)
Q Consensus 532 ~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 611 (790)
|.|.+.. ...+..|++|+.|||++|.++.+...-.+|-+.++|.+++| .+..+. +++++-+|..|++.+|.+.
T Consensus 315 S~N~i~~--v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N-~iE~LS--GL~KLYSLvnLDl~~N~Ie-- 387 (490)
T KOG1259|consen 315 SQNRIRT--VQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN-KIETLS--GLRKLYSLVNLDLSSNQIE-- 387 (490)
T ss_pred cccceee--ehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh-hHhhhh--hhHhhhhheeccccccchh--
Confidence 9999888 45588999999999999988877666667888999999998 677663 3889999999999999884
Q ss_pred hhcccccccccccccccCCCCCcEEEEEecCCCCCCcc
Q 039180 612 VERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPES 649 (790)
Q Consensus 612 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 649 (790)
.-.....++++|.|+.+.+.+|.+..++..
T Consensus 388 --------~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 388 --------ELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred --------hHHHhcccccccHHHHHhhcCCCccccchH
Confidence 223467899999999999999987766653
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=1.4e-10 Score=107.80 Aligned_cols=107 Identities=22% Similarity=0.302 Sum_probs=33.8
Q ss_pred ccCCceEEEEecCccccCCChhhh-hccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhh-hcccccce
Q 039180 498 KGVKKLRVVALVKMLLSSLPSSIY-LLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKAL-GELTKLRL 575 (790)
Q Consensus 498 ~~l~~L~~L~L~~~~~~~lp~~~~-~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l-~~l~~L~~ 575 (790)
.+..+++.|+|++|.|+.+. .++ .+.+|+.|+|++|.++.+ ..+..+++|++|++++|.|+.++..+ ..+++|++
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 35556777888888777663 444 467777788888777764 34667777777777777777776544 35777777
Q ss_pred ecCCccccccccCc-hhhccccccceEecccCCc
Q 039180 576 SDLTDCFHLKVIAP-NVISSLTRLEELYMGNCPI 608 (790)
Q Consensus 576 L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~ 608 (790)
|++++| .+..+.. ..+..+++|+.|++.+|++
T Consensus 93 L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 93 LYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp EE-TTS----SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred EECcCC-cCCChHHhHHHHcCCCcceeeccCCcc
Confidence 777776 4443321 2255667777777777765
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=2.9e-10 Score=105.81 Aligned_cols=80 Identities=29% Similarity=0.347 Sum_probs=22.7
Q ss_pred CCceEEEEecCccccCCChhhhhccccceeeccCccccccchhhh-hccCcccEEeccCCCCcccc--hhhhccccccee
Q 039180 500 VKKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAII-GKLKNLKILSFVRSDIVQLP--KALGELTKLRLS 576 (790)
Q Consensus 500 l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i-~~l~~L~~L~L~~~~l~~lp--~~l~~l~~L~~L 576 (790)
+.+|+.|+|++|.++.++ .+..+++|++|++++|.++.+ ...+ ..+++|++|++++|+|..+. ..+..+++|+.|
T Consensus 41 l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp -TT--EEE-TTS--S--T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred hcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence 445555555555555443 344455555555555555554 2222 24555555555555444221 224445555555
Q ss_pred cCCcc
Q 039180 577 DLTDC 581 (790)
Q Consensus 577 ~l~~~ 581 (790)
++.+|
T Consensus 119 ~L~~N 123 (175)
T PF14580_consen 119 SLEGN 123 (175)
T ss_dssp E-TT-
T ss_pred eccCC
Confidence 55554
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.6e-10 Score=117.32 Aligned_cols=205 Identities=22% Similarity=0.178 Sum_probs=135.2
Q ss_pred cccceeEEEeecccccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccC---CChhhhhcccc
Q 039180 450 ALKKYLAISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSS---LPSSIYLLVNL 526 (790)
Q Consensus 450 ~~~~l~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~---lp~~~~~l~~L 526 (790)
..++++.+++.++.....+. . .....|++++.|||+.|-+.. +...+..|++|
T Consensus 119 n~kkL~~IsLdn~~V~~~~~---------------------~---~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~L 174 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGI---------------------E---EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSL 174 (505)
T ss_pred hHHhhhheeecCccccccch---------------------h---hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccc
Confidence 34577778887776654432 0 234678889999999887653 34556688899
Q ss_pred ceeeccCccccccchhh-hhccCcccEEeccCCCCc--ccchhhhcccccceecCCccccccccCchhhccccccceEec
Q 039180 527 QTLCLDQSILRDIDIAI-IGKLKNLKILSFVRSDIV--QLPKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYM 603 (790)
Q Consensus 527 ~~L~L~~~~l~~l~p~~-i~~l~~L~~L~L~~~~l~--~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l 603 (790)
+.|+|+.|.+....-+. -..+++|+.|.|+.|+++ .+...+..+|+|+.|++..|..+... ......+..|++|+|
T Consensus 175 e~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~-~~~~~i~~~L~~LdL 253 (505)
T KOG3207|consen 175 ENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIK-ATSTKILQTLQELDL 253 (505)
T ss_pred hhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccccee-cchhhhhhHHhhccc
Confidence 99999988865531111 235788899999999887 55556677888999999887422211 111345778889999
Q ss_pred ccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCC--cc------ccccccceeEEEecCCCCCCC--ccc
Q 039180 604 GNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILP--ES------FLTQKLERFKISIGNESFMPS--QSV 673 (790)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~------~~~~~L~~L~l~~~~~~~~~~--~~~ 673 (790)
++|.+. +......++.++.|+.|+++.+++..+. .. ..+++|++|.+..|++...+. ...
T Consensus 254 s~N~li----------~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~ 323 (505)
T KOG3207|consen 254 SNNNLI----------DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLR 323 (505)
T ss_pred cCCccc----------ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhh
Confidence 888763 2233456777888888888887754432 21 236677777777777644433 455
Q ss_pred cCCccCeeeccceecc
Q 039180 674 ELPNLEALELCAINVD 689 (790)
Q Consensus 674 ~l~~L~~L~l~~~~l~ 689 (790)
.+++|+.|.+..+.++
T Consensus 324 ~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 324 TLENLKHLRITLNYLN 339 (505)
T ss_pred ccchhhhhhccccccc
Confidence 5677777776666444
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.96 E-value=2.1e-10 Score=113.41 Aligned_cols=237 Identities=15% Similarity=0.108 Sum_probs=135.7
Q ss_pred hccCCceEEEEecCcccc-----CCChhhhhccccceeeccCcc---ccccchhh-------hhccCcccEEeccCCCCc
Q 039180 497 FKGVKKLRVVALVKMLLS-----SLPSSIYLLVNLQTLCLDQSI---LRDIDIAI-------IGKLKNLKILSFVRSDIV 561 (790)
Q Consensus 497 ~~~l~~L~~L~L~~~~~~-----~lp~~~~~l~~L~~L~L~~~~---l~~l~p~~-------i~~l~~L~~L~L~~~~l~ 561 (790)
...+..+..++|++|.+. .+...+.+.++|+..++++-. +..-.|+. +-.+++|++||||.|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 346778899999999886 355667777889988888654 22222433 446679999999999665
Q ss_pred -c----cchhhhcccccceecCCccccccccCchh-------------hccccccceEecccCCccchhhcccccccccc
Q 039180 562 -Q----LPKALGELTKLRLSDLTDCFHLKVIAPNV-------------ISSLTRLEELYMGNCPIEWEVERANSERSNSS 623 (790)
Q Consensus 562 -~----lp~~l~~l~~L~~L~l~~~~~l~~~~~~~-------------l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 623 (790)
. +-.-+.++..|++|+|.+| .++...... ++.-+.|+++....|.+.- ..-...
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen-------~ga~~~ 177 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN-------GGATAL 177 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc-------ccHHHH
Confidence 2 2234567889999999998 554332222 2334667777777766520 001123
Q ss_pred cccccCCCCCcEEEEEecCCCCCCc------cccccccceeEEEecCCCCCCC-----ccccCCccCeeeccceecceec
Q 039180 624 LDELMNLPWLTTLEIDVKNDSILPE------SFLTQKLERFKISIGNESFMPS-----QSVELPNLEALELCAINVDKIW 692 (790)
Q Consensus 624 ~~~l~~l~~L~~L~l~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~~~~-----~~~~l~~L~~L~l~~~~l~~l~ 692 (790)
...+..++.|+.+.+..|.+..--. ...|++|+.|+|..|.+..... .+..+++|+.|++++|.++.-.
T Consensus 178 A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~G 257 (382)
T KOG1909|consen 178 AEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEG 257 (382)
T ss_pred HHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccccc
Confidence 3445666777777777666432111 1126677777777666553322 3445666777777777555321
Q ss_pred ccCCCccccccCCCccEEeeccCCcccccc---hhHHHhccccccEEeeccCc
Q 039180 693 HYNLLPFMLSRFQSLTRLIVRSCPKLKYIF---SASMIQNFELLRELSIADCR 742 (790)
Q Consensus 693 ~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~---~~~~~~~l~~L~~L~l~~c~ 742 (790)
...+....-.+.|+|+.|.+.+|. ++.-. ........|.|+.|++++|.
T Consensus 258 a~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 258 AIAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 001111112346667777776663 22210 01123345666667666664
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.90 E-value=3.5e-10 Score=108.97 Aligned_cols=44 Identities=18% Similarity=0.161 Sum_probs=21.3
Q ss_pred ChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCc
Q 039180 517 PSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIV 561 (790)
Q Consensus 517 p~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~ 561 (790)
|-.+.-+.+|..+.++.|.-..+ -.....-+.|+++.+.++.+.
T Consensus 207 ~f~l~~f~~l~~~~~s~~~~~~i-~~~~~~kptl~t~~v~~s~~~ 250 (490)
T KOG1259|consen 207 SFNLNAFRNLKTLKFSALSTENI-VDIELLKPTLQTICVHNTTIQ 250 (490)
T ss_pred ccchHHhhhhheeeeeccchhhe-eceeecCchhheeeeeccccc
Confidence 44445556666666666653221 111112245666666655443
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.87 E-value=1.6e-09 Score=118.32 Aligned_cols=173 Identities=31% Similarity=0.375 Sum_probs=110.1
Q ss_pred ccCCceEEEEecCccccCCChhhhhcc-ccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhhhccccccee
Q 039180 498 KGVKKLRVVALVKMLLSSLPSSIYLLV-NLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLS 576 (790)
Q Consensus 498 ~~l~~L~~L~L~~~~~~~lp~~~~~l~-~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L 576 (790)
..++.+..|++.++.+..+|.....+. +|+.|++++|.+..+ |..++.+++|+.|++++|.+..+|...+.+++|+.|
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccccchhhh-hhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 345677888888888888877777774 788888888887776 667778888888888888888877766677788888
Q ss_pred cCCccccccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCcccc-cccc
Q 039180 577 DLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFL-TQKL 655 (790)
Q Consensus 577 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L 655 (790)
++++| .+..+|.. ++.+..|++|.+++|... ..+..+..+.++..|.+.+|....++.... ++++
T Consensus 192 ~ls~N-~i~~l~~~-~~~~~~L~~l~~~~N~~~------------~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l 257 (394)
T COG4886 192 DLSGN-KISDLPPE-IELLSALEELDLSNNSII------------ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNL 257 (394)
T ss_pred eccCC-ccccCchh-hhhhhhhhhhhhcCCcce------------ecchhhhhcccccccccCCceeeeccchhcccccc
Confidence 88886 67777654 345566777877777421 123445556666666665555444332221 3334
Q ss_pred ceeEEEecCCCCCCCccccCCccCeeeccce
Q 039180 656 ERFKISIGNESFMPSQSVELPNLEALELCAI 686 (790)
Q Consensus 656 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~ 686 (790)
+.|+++.|.+...+. ...+.+|+.|+++++
T Consensus 258 ~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 258 ETLDLSNNQISSISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred ceecccccccccccc-ccccCccCEEeccCc
Confidence 444444444444433 334444444554444
No 41
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.83 E-value=1.5e-06 Score=93.83 Aligned_cols=266 Identities=14% Similarity=0.119 Sum_probs=152.6
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhcc-CC---CEEEEEEeCCCCCHHHHHHHHHHHh---CCCCc--hhHHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDE-LY---DMVVFSEVTQSPDIKQIQQEIAEKL---GLELS--EEAEFRRASR 198 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~-~f---~~~~wv~~~~~~~~~~~~~~i~~~l---~~~~~--~~~~~~~~~~ 198 (790)
.+.+.|+|++|+|||++++.+++...... .. -..+|+++....+...++..|++++ +...+ ..+..+....
T Consensus 40 ~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 119 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRR 119 (365)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHH
Confidence 45689999999999999999998764321 11 2467888888778889999999988 33221 1122334455
Q ss_pred HHHHHH-cCCcEEEEEeCCCCcc-Ccc----ccCccC-CCCC--CCcEEEEEeCChhHHhhhC-----C--CceEEccCC
Q 039180 199 MFERLK-NEKKILLILDNTWKSL-DLG----TIGIPF-GVEH--RGCKLLFTTRDLDVLIRMG-----S--EKNFSIGIL 262 (790)
Q Consensus 199 l~~~l~-~~kr~LlVlDdv~~~~-~~~----~l~~~~-~~~~--~gs~iliTtR~~~v~~~~~-----~--~~~~~l~~L 262 (790)
+.+.+. .+++++||||+++... ..+ .+.... .... ....+|.+|........+. . ...+.+.++
T Consensus 120 l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~ 199 (365)
T TIGR02928 120 LYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPY 199 (365)
T ss_pred HHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCC
Confidence 666654 3567899999998762 111 111110 0111 2234555554433221111 1 246889999
Q ss_pred CHHHHHHHHHHHhCC----CCCCcchHHHHHHHHHHhcCCcHHH-HHHHHHHh-----c--C-ChhHHHHHHHHhcCCCC
Q 039180 263 NEQEAWRLFKIIAGA----YVENRELKSTATSVAKACRGLPIAL-TIVVKALR-----N--K-ELPEWKNALQELQMPSE 329 (790)
Q Consensus 263 ~~~~~~~Lf~~~~~~----~~~~~~~~~~~~~i~~~~~glPlai-~~~~~~l~-----~--~-~~~~w~~~l~~l~~~~~ 329 (790)
+.++..+++..++.. ....++..+.+..++....|.|..+ ..+-.+.. + . +.+..+.+.+.+.
T Consensus 200 ~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~---- 275 (365)
T TIGR02928 200 DAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIE---- 275 (365)
T ss_pred CHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH----
Confidence 999999999887641 1122333344555677777888443 33222211 1 1 4444444444421
Q ss_pred CCcCCCCchhhhhhHHHHHHHHhHHhHHHHhhhccc---C--CCCHHHHHHHHh--hcCccchHHHHHHHHHHHHHHHhc
Q 039180 330 TSFDEGVPAEAYSTIELSYKYLGKQLKETILLCSLI---A--PTSIMDLINYTM--GFGVLKLEEAHNKLHAWVRQLRDS 402 (790)
Q Consensus 330 ~~~~~~~~~~~~~~l~~sy~~L~~~~k~~f~~~s~f---p--~~~~~~Li~~w~--~eg~~~~~~~~~~~~~~~~~L~~~ 402 (790)
.....-++..||.+.+..+..++.. . .+...++...+- ++.+--..-....+.++++.|...
T Consensus 276 -----------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~l~~~ 344 (365)
T TIGR02928 276 -----------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDIGVDPLTQRRISDLLNELDML 344 (365)
T ss_pred -----------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhc
Confidence 2334456678888877666555422 1 455666555321 111100112345677899999999
Q ss_pred cceeee
Q 039180 403 CLLLVD 408 (790)
Q Consensus 403 sll~~~ 408 (790)
|++...
T Consensus 345 gli~~~ 350 (365)
T TIGR02928 345 GLVEAE 350 (365)
T ss_pred CCeEEE
Confidence 999865
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.82 E-value=3.6e-09 Score=115.58 Aligned_cols=192 Identities=27% Similarity=0.282 Sum_probs=145.4
Q ss_pred EEEecCccccCCChhhhhccccceeeccCccccccchhhhhccC-cccEEeccCCCCcccchhhhcccccceecCCcccc
Q 039180 505 VVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLK-NLKILSFVRSDIVQLPKALGELTKLRLSDLTDCFH 583 (790)
Q Consensus 505 ~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~-~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~ 583 (790)
.+++..+.+..-+..+..+..+..|++.++.++.+ |...+.+. +|+.|++++|.+..+|..++.+++|+.|++++| .
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-D 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccC-ccccccchhhcccccccccchhhhhhhhhccccccccccCCc-h
Confidence 57777777755556667778899999999999888 77778885 999999999999999888899999999999998 7
Q ss_pred ccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCc-cccccccceeEEEe
Q 039180 584 LKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPE-SFLTQKLERFKISI 662 (790)
Q Consensus 584 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~ 662 (790)
+..+|.. .+.+++|+.|++++|.+. ..+.....+..|+.|.+++|.....+. .....++..+.+..
T Consensus 175 l~~l~~~-~~~~~~L~~L~ls~N~i~------------~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~ 241 (394)
T COG4886 175 LSDLPKL-LSNLSNLNNLDLSGNKIS------------DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN 241 (394)
T ss_pred hhhhhhh-hhhhhhhhheeccCCccc------------cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC
Confidence 8888764 458899999999998773 223333445568888888885333333 33366677777777
Q ss_pred cCCCCCCCccccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCCcc
Q 039180 663 GNESFMPSQSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKL 718 (790)
Q Consensus 663 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l 718 (790)
|.....+.....+++|+.|++++|.++++ +. ++.+.+|+.|+++++...
T Consensus 242 n~~~~~~~~~~~l~~l~~L~~s~n~i~~i------~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 242 NKLEDLPESIGNLSNLETLDLSNNQISSI------SS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ceeeeccchhccccccceecccccccccc------cc-ccccCccCEEeccCcccc
Confidence 76665556667788899999999988765 22 677888999999888543
No 43
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.76 E-value=5.9e-10 Score=112.64 Aligned_cols=264 Identities=15% Similarity=0.112 Sum_probs=134.8
Q ss_pred hhccCCceEEEEecCcc-cc--CCChhhhhccccceeeccCcc-ccccchh-hhhccCcccEEeccCC-CCc--ccchhh
Q 039180 496 FFKGVKKLRVVALVKML-LS--SLPSSIYLLVNLQTLCLDQSI-LRDIDIA-IIGKLKNLKILSFVRS-DIV--QLPKAL 567 (790)
Q Consensus 496 ~~~~l~~L~~L~L~~~~-~~--~lp~~~~~l~~L~~L~L~~~~-l~~l~p~-~i~~l~~L~~L~L~~~-~l~--~lp~~l 567 (790)
+...++++..|.+.++. ++ .+-+.-..+.+|++|+|..|. ++..... ....+++|.+|++++| .++ .+..-.
T Consensus 159 ~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~ 238 (483)
T KOG4341|consen 159 FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQ 238 (483)
T ss_pred HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHh
Confidence 34566666666666663 22 111222356667777766654 4443222 2235666777777666 343 233333
Q ss_pred hcccccceecCCccccccccCchhh----ccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecC-
Q 039180 568 GELTKLRLSDLTDCFHLKVIAPNVI----SSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKN- 642 (790)
Q Consensus 568 ~~l~~L~~L~l~~~~~l~~~~~~~l----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~- 642 (790)
..+++++.+.+.+|...+ ...+ +.+..+..+++..|....+ ......=..+..|+.|+.+++.
T Consensus 239 rG~~~l~~~~~kGC~e~~---le~l~~~~~~~~~i~~lnl~~c~~lTD---------~~~~~i~~~c~~lq~l~~s~~t~ 306 (483)
T KOG4341|consen 239 RGCKELEKLSLKGCLELE---LEALLKAAAYCLEILKLNLQHCNQLTD---------EDLWLIACGCHALQVLCYSSCTD 306 (483)
T ss_pred ccchhhhhhhhccccccc---HHHHHHHhccChHhhccchhhhccccc---------hHHHHHhhhhhHhhhhcccCCCC
Confidence 445555666555553222 1111 2334445555555533211 1111112234566777766544
Q ss_pred CCCCCccc---cccccceeEEEecCCCCCCC---ccccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCC
Q 039180 643 DSILPESF---LTQKLERFKISIGNESFMPS---QSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCP 716 (790)
Q Consensus 643 ~~~~~~~~---~~~~L~~L~l~~~~~~~~~~---~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~ 716 (790)
++..+.+. .+++|+.|-++.+....... ...+.+.|+.+++..|.+.. +..+.....+++.|+.|.|+.|.
T Consensus 307 ~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~---d~tL~sls~~C~~lr~lslshce 383 (483)
T KOG4341|consen 307 ITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLIT---DGTLASLSRNCPRLRVLSLSHCE 383 (483)
T ss_pred CchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceeh---hhhHhhhccCCchhccCChhhhh
Confidence 22222221 25677777777666433221 23456777777777772221 01112224567777777777776
Q ss_pred cccccchh---HHHhccccccEEeeccCchhhhHhhcCCCCCCCCcccCCccceeeccccccccccCh
Q 039180 717 KLKYIFSA---SMIQNFELLRELSIADCRGLREIISKDRADHVTPCFVFPQMTTLRLEILPELKCYTL 781 (790)
Q Consensus 717 ~l~~~~~~---~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~l~~ 781 (790)
.+++.... ....+...|+.|++++|+.+++-..+.. ..+++|+.+++.+|...+.=++
T Consensus 384 ~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l-------~~c~~Leri~l~~~q~vtk~~i 444 (483)
T KOG4341|consen 384 LITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHL-------SICRNLERIELIDCQDVTKEAI 444 (483)
T ss_pred hhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHH-------hhCcccceeeeechhhhhhhhh
Confidence 66654211 1123456677777777777666554433 3577888888777766655443
No 44
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.69 E-value=8.9e-09 Score=102.07 Aligned_cols=250 Identities=19% Similarity=0.133 Sum_probs=163.7
Q ss_pred hhhhccccceeeccCccccccc----hhhhhccCcccEEeccCC---CCc-ccchh-------hhcccccceecCCcccc
Q 039180 519 SIYLLVNLQTLCLDQSILRDID----IAIIGKLKNLKILSFVRS---DIV-QLPKA-------LGELTKLRLSDLTDCFH 583 (790)
Q Consensus 519 ~~~~l~~L~~L~L~~~~l~~l~----p~~i~~l~~L~~L~L~~~---~l~-~lp~~-------l~~l~~L~~L~l~~~~~ 583 (790)
.+..+..+.+++|++|.+..-- ...+.+.++|+..++++- ++. ++|+. +..+++|+.|+||+|-.
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 4456778999999999975431 345667789999999874 222 55653 44667999999999832
Q ss_pred ccccC---chhhccccccceEecccCCccchhhccccc--ccccccccccCCCCCcEEEEEecCCCCCCccc------cc
Q 039180 584 LKVIA---PNVISSLTRLEELYMGNCPIEWEVERANSE--RSNSSLDELMNLPWLTTLEIDVKNDSILPESF------LT 652 (790)
Q Consensus 584 l~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~------~~ 652 (790)
-..-+ ...+.+++.|++|+|.+|.+.......-.. ..-......+.-++|+.+....|.....+... ..
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH 184 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence 22222 233577999999999999874221100000 00002234556789999999999877666433 25
Q ss_pred cccceeEEEecCCCCCCC-----ccccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCCcccccchhH--
Q 039180 653 QKLERFKISIGNESFMPS-----QSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSAS-- 725 (790)
Q Consensus 653 ~~L~~L~l~~~~~~~~~~-----~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~-- 725 (790)
+.|+.+.+..|.+..... .+..+|+|+.|+|.+|-++.-. +......+..+++|+.|++++| .+.+-....
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~eg-s~~LakaL~s~~~L~El~l~dc-ll~~~Ga~a~~ 262 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEG-SVALAKALSSWPHLRELNLGDC-LLENEGAIAFV 262 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHH-HHHHHHHhcccchheeeccccc-ccccccHHHHH
Confidence 789999999998765443 4567899999999999665421 1112233567889999999999 565533221
Q ss_pred --HHhccccccEEeeccCchhhhHhhcCCCCCCCCcccCCccceeeccccc
Q 039180 726 --MIQNFELLRELSIADCRGLREIISKDRADHVTPCFVFPQMTTLRLEILP 774 (790)
Q Consensus 726 --~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~ 774 (790)
.-...|+|+.|.+.+|. ++.-...... ......|.|+.|+|.+|.
T Consensus 263 ~al~~~~p~L~vl~l~gNe-It~da~~~la---~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 263 DALKESAPSLEVLELAGNE-ITRDAALALA---ACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHhccCCCCceeccCcch-hHHHHHHHHH---HHHhcchhhHHhcCCccc
Confidence 23468999999999985 3322110000 011237999999999876
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1.4e-09 Score=104.99 Aligned_cols=111 Identities=18% Similarity=0.134 Sum_probs=67.7
Q ss_pred ccccceeEEEecCCCCCCC---ccccCCccCeeeccce--ecceecccCCCccccccCCCccEEeeccCCcccccchhHH
Q 039180 652 TQKLERFKISIGNESFMPS---QSVELPNLEALELCAI--NVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASM 726 (790)
Q Consensus 652 ~~~L~~L~l~~~~~~~~~~---~~~~l~~L~~L~l~~~--~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~ 726 (790)
|+.|..|++++|....... ..+--++|..|+|+++ ++.. .........||+|..|+|++|..+++- ....
T Consensus 259 cs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~----sh~~tL~~rcp~l~~LDLSD~v~l~~~-~~~~ 333 (419)
T KOG2120|consen 259 CSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQK----SHLSTLVRRCPNLVHLDLSDSVMLKND-CFQE 333 (419)
T ss_pred hhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhh----hHHHHHHHhCCceeeeccccccccCch-HHHH
Confidence 4455555555555443222 1122367777788777 3321 011122567888999999988877773 3455
Q ss_pred HhccccccEEeeccCchhhhHhhcCCCCCCCCcccCCccceeeccccc
Q 039180 727 IQNFELLRELSIADCRGLREIISKDRADHVTPCFVFPQMTTLRLEILP 774 (790)
Q Consensus 727 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~ 774 (790)
+-.|+.|++|.++.|..+.--... .....|.|.+|++.+|-
T Consensus 334 ~~kf~~L~~lSlsRCY~i~p~~~~-------~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 334 FFKFNYLQHLSLSRCYDIIPETLL-------ELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HHhcchheeeehhhhcCCChHHee-------eeccCcceEEEEecccc
Confidence 678888999999988754332222 22358888888888763
No 46
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.60 E-value=2.1e-09 Score=108.68 Aligned_cols=270 Identities=18% Similarity=0.128 Sum_probs=176.0
Q ss_pred CceEEEEecCccc---cCCChhhhhccccceeeccCcc-ccccchhhhh-ccCcccEEeccCC-CCc--ccchhhhcccc
Q 039180 501 KKLRVVALVKMLL---SSLPSSIYLLVNLQTLCLDQSI-LRDIDIAIIG-KLKNLKILSFVRS-DIV--QLPKALGELTK 572 (790)
Q Consensus 501 ~~L~~L~L~~~~~---~~lp~~~~~l~~L~~L~L~~~~-l~~l~p~~i~-~l~~L~~L~L~~~-~l~--~lp~~l~~l~~ 572 (790)
..|+.|.+.++.- ..+-....+++++++|.+.+|. +++..-.+++ .+++|++|+|..| .++ .+-.....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 3578888888743 2445566788999999999987 5543334443 6889999999997 666 23334567899
Q ss_pred cceecCCccccccccC-chhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecC-CCCCCccc
Q 039180 573 LRLSDLTDCFHLKVIA-PNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKN-DSILPESF 650 (790)
Q Consensus 573 L~~L~l~~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~ 650 (790)
|++|+++.|..++.-. .....++.+++.+.+.+|.-.. .......=+.+..+..+++..+. ++....+.
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~---------le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~ 288 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE---------LEALLKAAAYCLEILKLNLQHCNQLTDEDLWL 288 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc---------HHHHHHHhccChHhhccchhhhccccchHHHH
Confidence 9999999987665411 1124566778888777764210 00011111123334455543332 32222222
Q ss_pred ---cccccceeEEEecCCCCCCC---ccccCCccCeeeccce-ecceecccCCCccccccCCCccEEeeccCCcccccch
Q 039180 651 ---LTQKLERFKISIGNESFMPS---QSVELPNLEALELCAI-NVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFS 723 (790)
Q Consensus 651 ---~~~~L~~L~l~~~~~~~~~~---~~~~l~~L~~L~l~~~-~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~ 723 (790)
.+..|+.|+.+++....... .....++|+.|.+..| ++++.+. ...-.+++.|+.+++.+|....+-..
T Consensus 289 i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~f----t~l~rn~~~Le~l~~e~~~~~~d~tL 364 (483)
T KOG4341|consen 289 IACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGF----TMLGRNCPHLERLDLEECGLITDGTL 364 (483)
T ss_pred HhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhh----hhhhcCChhhhhhcccccceehhhhH
Confidence 37889999988877644332 3456799999999999 7776522 12246789999999999977766533
Q ss_pred hHHHhccccccEEeeccCchhhhHhhcCCCCCCCCcccCCccceeeccccccccccChhhhhc
Q 039180 724 ASMIQNFELLRELSIADCRGLREIISKDRADHVTPCFVFPQMTTLRLEILPELKCYTLECILR 786 (790)
Q Consensus 724 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~l~~~~~~~ 786 (790)
.....+||.|++|.+++|..+++-...... ........|..+.+.+||.+++-.++.+..
T Consensus 365 ~sls~~C~~lr~lslshce~itD~gi~~l~---~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~ 424 (483)
T KOG4341|consen 365 ASLSRNCPRLRVLSLSHCELITDEGIRHLS---SSSCSLEGLEVLELDNCPLITDATLEHLSI 424 (483)
T ss_pred hhhccCCchhccCChhhhhhhhhhhhhhhh---hccccccccceeeecCCCCchHHHHHHHhh
Confidence 445569999999999999877766321111 122357889999999999998877665543
No 47
>PRK06893 DNA replication initiation factor; Validated
Probab=98.60 E-value=2.7e-07 Score=91.74 Aligned_cols=151 Identities=16% Similarity=0.151 Sum_probs=94.6
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCCc
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEKK 208 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 208 (790)
+.+.++|+.|+|||+|++.+++....+ ...+.|+++..... . ...+.+.+. +.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~~~---~--------------------~~~~~~~~~--~~ 92 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKSQY---F--------------------SPAVLENLE--QQ 92 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHhhh---h--------------------hHHHHhhcc--cC
Confidence 678999999999999999999986544 23456776532100 0 011222332 23
Q ss_pred EEEEEeCCCCc---cCccc-cCccCCC-CCCCcEEEEEeCC----------hhHHhhhCCCceEEccCCCHHHHHHHHHH
Q 039180 209 ILLILDNTWKS---LDLGT-IGIPFGV-EHRGCKLLFTTRD----------LDVLIRMGSEKNFSIGILNEQEAWRLFKI 273 (790)
Q Consensus 209 ~LlVlDdv~~~---~~~~~-l~~~~~~-~~~gs~iliTtR~----------~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~ 273 (790)
-+||+||+|.. ..|+. +...+.. ...|+.+||+|.+ .++...+.....+++++++.++.++++++
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~ 172 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQR 172 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHH
Confidence 59999999874 33442 2222222 1235556554443 24555566667999999999999999998
Q ss_pred HhCCCCCCcchHHHHHHHHHHhcCCcHHHHHHHH
Q 039180 274 IAGAYVENRELKSTATSVAKACRGLPIALTIVVK 307 (790)
Q Consensus 274 ~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~ 307 (790)
.+.... ..--++..+-|++.+.|..-++..+-.
T Consensus 173 ~a~~~~-l~l~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 173 NAYQRG-IELSDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 886332 222356777888888887655544443
No 48
>PF13173 AAA_14: AAA domain
Probab=98.56 E-value=1.1e-07 Score=85.23 Aligned_cols=120 Identities=19% Similarity=0.201 Sum_probs=81.0
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
.+++.|.|+-|+||||++++++.+.. ....+++++..+......... +..+.+.+... ++
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~----------------~~~~~~~~~~~-~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADP----------------DLLEYFLELIK-PG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhh----------------hhHHHHHHhhc-cC
Confidence 47899999999999999999998865 234577777665433111000 01122222222 25
Q ss_pred cEEEEEeCCCCccCccccCccCCCCCCCcEEEEEeCChhHHhh------hCCCceEEccCCCHHHH
Q 039180 208 KILLILDNTWKSLDLGTIGIPFGVEHRGCKLLFTTRDLDVLIR------MGSEKNFSIGILNEQEA 267 (790)
Q Consensus 208 r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtR~~~v~~~------~~~~~~~~l~~L~~~~~ 267 (790)
+.+++||++....+|......+.+..+..+|++|+.+...... .+....+++.||+-.|.
T Consensus 62 ~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 6889999999988888766666665567899999998665533 22335789999987763
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.56 E-value=1.2e-08 Score=111.59 Aligned_cols=106 Identities=28% Similarity=0.339 Sum_probs=72.8
Q ss_pred ccCCceEEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceec
Q 039180 498 KGVKKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSD 577 (790)
Q Consensus 498 ~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~ 577 (790)
..+++|..|++.+|.+..+...+..+.+|++|++++|.|+. ...+..++.|+.|++++|.|+.++. +..+++|+.++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~--i~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~ 168 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITK--LEGLSTLTLLKELNLSGNLISDISG-LESLKSLKLLD 168 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheecccccccc--ccchhhccchhhheeccCcchhccC-Cccchhhhccc
Confidence 56677777777777777765556777777777777777776 3446667777777777777776543 55577777777
Q ss_pred CCccccccccCc-hhhccccccceEecccCCc
Q 039180 578 LTDCFHLKVIAP-NVISSLTRLEELYMGNCPI 608 (790)
Q Consensus 578 l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~ 608 (790)
+++| .+..+.. . ...+.+|+.+.+.+|.+
T Consensus 169 l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 169 LSYN-RIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred CCcc-hhhhhhhhh-hhhccchHHHhccCCch
Confidence 7776 4444443 1 35677777777777765
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.55 E-value=8.4e-09 Score=112.75 Aligned_cols=214 Identities=22% Similarity=0.241 Sum_probs=152.2
Q ss_pred cCCceEEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceecC
Q 039180 499 GVKKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSDL 578 (790)
Q Consensus 499 ~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l 578 (790)
.+..++.+.+..|.+..+-..++.+.+|.+|++.+|.+..+ ...+..+++|++|++++|.|+.+.. +..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccc-hhhccchhhhee
Confidence 45667777788888887656688999999999999999885 4438899999999999999998754 778888999999
Q ss_pred CccccccccCchhhccccccceEecccCCccchhhccccccccccccc--ccCCCCCcEEEEEecCCCCCCccccccccc
Q 039180 579 TDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDE--LMNLPWLTTLEIDVKNDSILPESFLTQKLE 656 (790)
Q Consensus 579 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~ 656 (790)
++| .+..+.. +..+++|+.+++++|.+.. ... +..+.+|+.+.+.+|....+.....+..+.
T Consensus 148 ~~N-~i~~~~~--~~~l~~L~~l~l~~n~i~~-------------ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~ 211 (414)
T KOG0531|consen 148 SGN-LISDISG--LESLKSLKLLDLSYNRIVD-------------IENDELSELISLEELDLGGNSIREIEGLDLLKKLV 211 (414)
T ss_pred ccC-cchhccC--CccchhhhcccCCcchhhh-------------hhhhhhhhccchHHHhccCCchhcccchHHHHHHH
Confidence 998 6776643 6679999999999998742 122 467788888899888876666555555666
Q ss_pred eeEEEecCCCCCCCccccCC--ccCeeeccceecceecccCCCccccccCCCccEEeeccCCcccccchhHHHhcccccc
Q 039180 657 RFKISIGNESFMPSQSVELP--NLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFELLR 734 (790)
Q Consensus 657 ~L~l~~~~~~~~~~~~~~l~--~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~ 734 (790)
.+++..|.+..... ...++ +|+.+++++|.+..+ +..+..+..+..|++.++. +... ......+.+.
T Consensus 212 ~~~l~~n~i~~~~~-l~~~~~~~L~~l~l~~n~i~~~------~~~~~~~~~l~~l~~~~n~-~~~~---~~~~~~~~~~ 280 (414)
T KOG0531|consen 212 LLSLLDNKISKLEG-LNELVMLHLRELYLSGNRISRS------PEGLENLKNLPVLDLSSNR-ISNL---EGLERLPKLS 280 (414)
T ss_pred HhhcccccceeccC-cccchhHHHHHHhcccCccccc------cccccccccccccchhhcc-cccc---ccccccchHH
Confidence 66666666554433 11222 378888888877653 1335667788888887773 3333 1233445555
Q ss_pred EEeeccC
Q 039180 735 ELSIADC 741 (790)
Q Consensus 735 ~L~l~~c 741 (790)
.+...+.
T Consensus 281 ~~~~~~~ 287 (414)
T KOG0531|consen 281 ELWLNDN 287 (414)
T ss_pred HhccCcc
Confidence 5555543
No 51
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.54 E-value=2.3e-07 Score=93.28 Aligned_cols=174 Identities=19% Similarity=0.263 Sum_probs=92.7
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHH--------------HHHhCCCC------
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEI--------------AEKLGLEL------ 187 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i--------------~~~l~~~~------ 187 (790)
.+.+.|+|+.|+|||+|++.+.+..+... + .++|+...+...... ...+ ...+....
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~-~-~~~y~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 96 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKG-Y-KVVYIDFLEESNESS-LRSFIEETSLADELSEALGISIPSITLEKISK 96 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--E-E-CCCHHCCTTBSHHHH-HHHHHHHHHHHCHCHHHHHHHCCTSTTEEEEC
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcC-C-cEEEEecccchhhhH-HHHHHHHHHHHHHHHHHHhhhcccccchhhhh
Confidence 57899999999999999999999874321 1 244444433332221 2221 11111100
Q ss_pred -chhHHHHHHHHHHHHHHc-CCcEEEEEeCCCCcc-Ccc-------ccCccCCC--CCCCcEEEEEeCChhHHhh-----
Q 039180 188 -SEEAEFRRASRMFERLKN-EKKILLILDNTWKSL-DLG-------TIGIPFGV--EHRGCKLLFTTRDLDVLIR----- 250 (790)
Q Consensus 188 -~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~-~~~-------~l~~~~~~--~~~gs~iliTtR~~~v~~~----- 250 (790)
........+..+.+.+.. +++++||+||+.... ... .+...+.. ......+|+++........
T Consensus 97 ~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~ 176 (234)
T PF01637_consen 97 DLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDK 176 (234)
T ss_dssp TS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TT
T ss_pred cchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhccc
Confidence 112223445666666653 356999999997665 111 11111111 2333445666655544433
Q ss_pred ---hCCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHHHHH
Q 039180 251 ---MGSEKNFSIGILNEQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIALTI 304 (790)
Q Consensus 251 ---~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 304 (790)
.+....+.+++|+.+++++++...+.....-+.-++..++|...+||+|..|..
T Consensus 177 ~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 177 SPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp STTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred CccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 233346999999999999999987654311122355679999999999988764
No 52
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.54 E-value=7.3e-08 Score=73.53 Aligned_cols=60 Identities=28% Similarity=0.383 Sum_probs=40.8
Q ss_pred CceEEEEecCccccCCC-hhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCC
Q 039180 501 KKLRVVALVKMLLSSLP-SSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDI 560 (790)
Q Consensus 501 ~~L~~L~L~~~~~~~lp-~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l 560 (790)
++|++|++++|.+..+| ..|..+++|++|++++|.++.+.|..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 45677777777777664 4556677777777777777666556667777777777776653
No 53
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=4.3e-09 Score=101.66 Aligned_cols=57 Identities=23% Similarity=0.265 Sum_probs=27.9
Q ss_pred ceEEEEecCcccc--CCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCC
Q 039180 502 KLRVVALVKMLLS--SLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRS 558 (790)
Q Consensus 502 ~L~~L~L~~~~~~--~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~ 558 (790)
.|++|||++..++ .+-.-+..|..|+.|.|.++.+.+.+...|.+=.+|+.|+|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC 244 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence 4555666655554 23333444555555555555554433334444444444444444
No 54
>PLN03150 hypothetical protein; Provisional
Probab=98.53 E-value=1.8e-07 Score=107.04 Aligned_cols=104 Identities=20% Similarity=0.305 Sum_probs=61.4
Q ss_pred eEEEEecCcccc-CCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCc-ccchhhhcccccceecCCc
Q 039180 503 LRVVALVKMLLS-SLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIV-QLPKALGELTKLRLSDLTD 580 (790)
Q Consensus 503 L~~L~L~~~~~~-~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L~l~~ 580 (790)
++.|+|++|.+. .+|..++.+++|++|+|++|.+.+..|..++.+++|+.|+|++|.+. .+|..++++++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 556666666665 45666666666666666666666554666666666666666666665 5666666666666666666
Q ss_pred cccccccCchhhcc-ccccceEecccCC
Q 039180 581 CFHLKVIAPNVISS-LTRLEELYMGNCP 607 (790)
Q Consensus 581 ~~~l~~~~~~~l~~-l~~L~~L~l~~~~ 607 (790)
|.....+|.. ++. +.++..+++.+|.
T Consensus 500 N~l~g~iP~~-l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAA-LGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChH-HhhccccCceEEecCCc
Confidence 6433344443 333 2344455555443
No 55
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.51 E-value=9.4e-06 Score=85.14 Aligned_cols=248 Identities=14% Similarity=0.091 Sum_probs=127.9
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCC----c--hhHHHHHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLEL----S--EEAEFRRASRMFE 201 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----~--~~~~~~~~~~l~~ 201 (790)
...+.++|++|+|||++|+.+++..... + ..+..+....... +...+..++... + ..-.......++.
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~~-l~~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~ 103 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPGD-LAAILTNLEEGDVLFIDEIHRLSPAVEELLYP 103 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCchh-HHHHHHhcccCCEEEEehHhhhCHHHHHHhhH
Confidence 4567899999999999999999876432 2 1222221112222 222233332211 0 0000111223333
Q ss_pred HHHcCCcEEEEEeCCCCccCccccCccCCCCCCCcEEEEEeCChhHHhhh-C-CCceEEccCCCHHHHHHHHHHHhCCCC
Q 039180 202 RLKNEKKILLILDNTWKSLDLGTIGIPFGVEHRGCKLLFTTRDLDVLIRM-G-SEKNFSIGILNEQEAWRLFKIIAGAYV 279 (790)
Q Consensus 202 ~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtR~~~v~~~~-~-~~~~~~l~~L~~~~~~~Lf~~~~~~~~ 279 (790)
.+. +.+..+|+|+..+...+.. .+ .+.+-|..||+...+...+ . ....+.+++++.++..+++.+.+....
T Consensus 104 ~~~-~~~~~~v~~~~~~~~~~~~---~~---~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~ 176 (305)
T TIGR00635 104 AME-DFRLDIVIGKGPSARSVRL---DL---PPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLN 176 (305)
T ss_pred HHh-hhheeeeeccCccccceee---cC---CCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhC
Confidence 343 3456677777665554432 11 1245566677765443331 1 134689999999999999998876322
Q ss_pred CCcchHHHHHHHHHHhcCCcHHHHHHHHHHhcCChhHHHHHHHHhcCCCCCCcCCCCchhhhhhHHHHHHHHhHHhHHHH
Q 039180 280 ENRELKSTATSVAKACRGLPIALTIVVKALRNKELPEWKNALQELQMPSETSFDEGVPAEAYSTIELSYKYLGKQLKETI 359 (790)
Q Consensus 280 ~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~f 359 (790)
. .-..+....|++.|+|.|..+..+...+. ..+. ....... ...........+...|..++++.+..+
T Consensus 177 ~-~~~~~al~~ia~~~~G~pR~~~~ll~~~~-------~~a~-~~~~~~i---t~~~v~~~l~~l~~~~~~l~~~~~~~L 244 (305)
T TIGR00635 177 V-EIEPEAALEIARRSRGTPRIANRLLRRVR-------DFAQ-VRGQKII---NRDIALKALEMLMIDELGLDEIDRKLL 244 (305)
T ss_pred C-CcCHHHHHHHHHHhCCCcchHHHHHHHHH-------HHHH-HcCCCCc---CHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 2 22356778899999999977655554321 1110 0000000 000000011123344556666666655
Q ss_pred h-hhcccC--CCCHHHHHHHHhhcCccchHHHHHHHHHHHH-HHHhccceeee
Q 039180 360 L-LCSLIA--PTSIMDLINYTMGFGVLKLEEAHNKLHAWVR-QLRDSCLLLVD 408 (790)
Q Consensus 360 ~-~~s~fp--~~~~~~Li~~w~~eg~~~~~~~~~~~~~~~~-~L~~~sll~~~ 408 (790)
. ..+.++ .+....+.... | ......+..++ .|++.+|+...
T Consensus 245 ~al~~~~~~~~~~~~~ia~~l---g-----~~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 245 SVLIEQFQGGPVGLKTLAAAL---G-----EDADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred HHHHHHhCCCcccHHHHHHHh---C-----CCcchHHHhhhHHHHHcCCcccC
Confidence 5 445554 34444443322 1 11233445677 58999999754
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=4.1e-08 Score=95.00 Aligned_cols=71 Identities=15% Similarity=0.167 Sum_probs=47.9
Q ss_pred cCCccCeeeccceecceecccCCCccccccCCCccEEeeccCCcccccchhHHHhccccccEEeeccCchhhhHhh
Q 039180 674 ELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFELLRELSIADCRGLREIIS 749 (790)
Q Consensus 674 ~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 749 (790)
.||++..+.+..|.+.+... ......+|.+.-|+|+.+ ++.++.....+.+||+|..|.+.+.|.+..+..
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~----ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESS----EKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred hcccchheeeecCcccchhh----cccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 46777777777776655421 112344666667777777 677777777778888888888888776655543
No 57
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.46 E-value=6.3e-07 Score=80.95 Aligned_cols=116 Identities=24% Similarity=0.305 Sum_probs=80.1
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhc---cCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCch-hHHHHHHHHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIED---ELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSE-EAEFRRASRMFER 202 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~ 202 (790)
+-+++.|+|.+|+|||++++.+....... ..-..++|+.+....+...+.+.|+..++..... ....+....+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 45789999999999999999999886431 1134577999988889999999999999987665 3444555777788
Q ss_pred HHcCCcEEEEEeCCCCc-c--CccccCccCCCCCCCcEEEEEeCC
Q 039180 203 LKNEKKILLILDNTWKS-L--DLGTIGIPFGVEHRGCKLLFTTRD 244 (790)
Q Consensus 203 l~~~kr~LlVlDdv~~~-~--~~~~l~~~~~~~~~gs~iliTtR~ 244 (790)
+.+.+..+||+||++.. . .++.+.... ...+.++|+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~--~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLL--NESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHT--CSCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHH--hCCCCeEEEEECh
Confidence 87766679999999765 2 233332222 2556677777665
No 58
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.45 E-value=2.6e-07 Score=94.73 Aligned_cols=292 Identities=18% Similarity=0.217 Sum_probs=182.7
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhhccCC-CEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIEDELY-DMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLK 204 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 204 (790)
...+.+.++|.|||||||++-++.. ... -| +.+.++......+...+.-.++..++...... ......+.....
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~-~~~--~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g--~~~~~~~~~~~~ 86 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH-AAS--EYADGVAFVDLAPITDPALVFPTLAGALGLHVQPG--DSAVDTLVRRIG 86 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh-Hhh--hcccceeeeeccccCchhHhHHHHHhhcccccccc--hHHHHHHHHHHh
Confidence 3568899999999999999999988 332 25 56777777777788888777788787765431 122334555555
Q ss_pred cCCcEEEEEeCCCCccC-ccccCccCCCCCCCcEEEEEeCChhHHhhhCCCceEEccCCCHH-HHHHHHHHHhCC----C
Q 039180 205 NEKKILLILDNTWKSLD-LGTIGIPFGVEHRGCKLLFTTRDLDVLIRMGSEKNFSIGILNEQ-EAWRLFKIIAGA----Y 278 (790)
Q Consensus 205 ~~kr~LlVlDdv~~~~~-~~~l~~~~~~~~~gs~iliTtR~~~v~~~~~~~~~~~l~~L~~~-~~~~Lf~~~~~~----~ 278 (790)
.+|.++|+||.....+ -..+...+..+...-.++.|+|+. ..+.......+.+|+.. ++.++|...+.. -
T Consensus 87 -~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~---~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 -DRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREA---ILVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred -hhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhh---hcccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 4889999999876532 112223333445556788888863 23445567777887755 788998776641 1
Q ss_pred CCCcchHHHHHHHHHHhcCCcHHHHHHHHHHhcCChhHHHHHHHH-hcCCCCCCcC-CCCchhhhhhHHHHHHHHhHHhH
Q 039180 279 VENRELKSTATSVAKACRGLPIALTIVVKALRNKELPEWKNALQE-LQMPSETSFD-EGVPAEAYSTIELSYKYLGKQLK 356 (790)
Q Consensus 279 ~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~~~l~~-l~~~~~~~~~-~~~~~~~~~~l~~sy~~L~~~~k 356 (790)
.-.......+..|.++..|.|++|...++..+.....+--..++. +......... ..-.......+.+||.-|....+
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~ 242 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWER 242 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHH
Confidence 223344567889999999999999999999887654443222221 1100000000 00011237789999999999999
Q ss_pred HHHhhhcccC-CCCHHHHHHHHhhcCccchHHHHHHHHHHHHHHHhccceeee--CCcCeEEeChhhHHHHHHHhh
Q 039180 357 ETILLCSLIA-PTSIMDLINYTMGFGVLKLEEAHNKLHAWVRQLRDSCLLLVD--GSSKFFSMHDVLRDVAISIAC 429 (790)
Q Consensus 357 ~~f~~~s~fp-~~~~~~Li~~w~~eg~~~~~~~~~~~~~~~~~L~~~sll~~~--~~~~~~~~h~li~~~~~~~~~ 429 (790)
-.|..++.|. .|... ...|.+-|-.. ..........+..+++.+++... .....|+.-+-.+.|+..+..
T Consensus 243 ~~~~rLa~~~g~f~~~--l~~~~a~g~~~-~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~ 315 (414)
T COG3903 243 ALFGRLAVFVGGFDLG--LALAVAAGADV-DVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELH 315 (414)
T ss_pred HHhcchhhhhhhhccc--HHHHHhcCCcc-ccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 66655 23444433110 01112223344567777776544 233345555666666655543
No 59
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.45 E-value=1.4e-05 Score=84.34 Aligned_cols=248 Identities=13% Similarity=0.079 Sum_probs=126.3
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCC----chhHH--HHHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLEL----SEEAE--FRRASRMFE 201 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----~~~~~--~~~~~~l~~ 201 (790)
.+.+.++|++|+|||++|+.+++..... + .++..+. ......+..++..+.... ++... ......+..
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~~-~~~~~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~ 124 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGPA-LEKPGDLAAILTNLEEGDVLFIDEIHRLSPVVEEILYP 124 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEeccc-ccChHHHHHHHHhcccCCEEEEecHhhcchHHHHHHHH
Confidence 4568899999999999999999986432 1 2222221 111122233333332211 00000 011122223
Q ss_pred HHHcCCcEEEEEeCCCCccCccccCccCCCCCCCcEEEEEeCChhHHhhh-C-CCceEEccCCCHHHHHHHHHHHhCCCC
Q 039180 202 RLKNEKKILLILDNTWKSLDLGTIGIPFGVEHRGCKLLFTTRDLDVLIRM-G-SEKNFSIGILNEQEAWRLFKIIAGAYV 279 (790)
Q Consensus 202 ~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtR~~~v~~~~-~-~~~~~~l~~L~~~~~~~Lf~~~~~~~~ 279 (790)
.+. +.+..+|+|+..+...+.. .+ .+.+-|..||+...+...+ . ....+.+++++.++..+++.+.+....
T Consensus 125 ~~e-~~~~~~~l~~~~~~~~~~~---~l---~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~ 197 (328)
T PRK00080 125 AME-DFRLDIMIGKGPAARSIRL---DL---PPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILG 197 (328)
T ss_pred HHH-hcceeeeeccCccccceee---cC---CCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 333 3455666666544432221 11 1234466677754433322 1 134789999999999999998876332
Q ss_pred CCcchHHHHHHHHHHhcCCcHHHHHHHHHHhcCChhHHHHHHHHhcCCCCCCcCCCCchhhhhhHHHHHHHHhHHhHHHH
Q 039180 280 ENRELKSTATSVAKACRGLPIALTIVVKALRNKELPEWKNALQELQMPSETSFDEGVPAEAYSTIELSYKYLGKQLKETI 359 (790)
Q Consensus 280 ~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~f 359 (790)
. .-.++....|++.|+|.|..+..+...+. .|.... .... .....-......+...+..|++..+..+
T Consensus 198 ~-~~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~---~~~~---I~~~~v~~~l~~~~~~~~~l~~~~~~~l 265 (328)
T PRK00080 198 V-EIDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVK---GDGV---ITKEIADKALDMLGVDELGLDEMDRKYL 265 (328)
T ss_pred C-CcCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHc---CCCC---CCHHHHHHHHHHhCCCcCCCCHHHHHHH
Confidence 2 22346788999999999965555554322 111110 0000 0000001112233444556666666666
Q ss_pred h-hhcccC--CCCHHHHHHHHhhcCccchHHHHHHHHHHHH-HHHhccceeee
Q 039180 360 L-LCSLIA--PTSIMDLINYTMGFGVLKLEEAHNKLHAWVR-QLRDSCLLLVD 408 (790)
Q Consensus 360 ~-~~s~fp--~~~~~~Li~~w~~eg~~~~~~~~~~~~~~~~-~L~~~sll~~~ 408 (790)
. ....|+ .+..+.+.... ++ .....++.++ .|++.+|++..
T Consensus 266 ~~~~~~~~~~~~~~~~~a~~l-g~-------~~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 266 RTIIEKFGGGPVGLDTLAAAL-GE-------ERDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred HHHHHHcCCCceeHHHHHHHH-CC-------CcchHHHHhhHHHHHcCCcccC
Confidence 4 555665 45555543332 11 1223344566 78889999755
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=2.8e-08 Score=96.13 Aligned_cols=206 Identities=22% Similarity=0.189 Sum_probs=100.4
Q ss_pred hccCCceEEEEecCccccC---CChhhhhccccceeeccCccccccchhhh-hccCcccEEeccCCCCc--ccchhhhcc
Q 039180 497 FKGVKKLRVVALVKMLLSS---LPSSIYLLVNLQTLCLDQSILRDIDIAII-GKLKNLKILSFVRSDIV--QLPKALGEL 570 (790)
Q Consensus 497 ~~~l~~L~~L~L~~~~~~~---lp~~~~~l~~L~~L~L~~~~l~~l~p~~i-~~l~~L~~L~L~~~~l~--~lp~~l~~l 570 (790)
-..+..++.|||.+|.++. +...+.++++|++|+|+.|.+... ..++ ..+.+|++|.|.++.+. .....+..+
T Consensus 67 ~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~l 145 (418)
T KOG2982|consen 67 GSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDL 145 (418)
T ss_pred HHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEEEEEcCCCCChhhhhhhhhcc
Confidence 3455666666666666652 333344666666666666665432 1111 23345666666665433 444445555
Q ss_pred cccceecCCccccccccC--chhhcc-ccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCC
Q 039180 571 TKLRLSDLTDCFHLKVIA--PNVISS-LTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILP 647 (790)
Q Consensus 571 ~~L~~L~l~~~~~l~~~~--~~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 647 (790)
++++.|+++.|+ +..+- ...+.. -+.+.+|+...|...... ....--.-
T Consensus 146 P~vtelHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~---------~~~~l~r~------------------ 197 (418)
T KOG2982|consen 146 PKVTELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWL---------NKNKLSRI------------------ 197 (418)
T ss_pred hhhhhhhhccch-hhhhccccccccccchhhhhhhcCCcHHHHHH---------HHHhHHhh------------------
Confidence 556666555541 11110 000111 123333333333211000 00000011
Q ss_pred ccccccccceeEEEecCCCCCCC--ccccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCCcccccch--
Q 039180 648 ESFLTQKLERFKISIGNESFMPS--QSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFS-- 723 (790)
Q Consensus 648 ~~~~~~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~-- 723 (790)
++++..+-+..|.+..... ....+|.+..|.|+.+++.+|.. -..+..|+.|..|.++++|....+..
T Consensus 198 ----Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswas----vD~Ln~f~~l~dlRv~~~Pl~d~l~~~e 269 (418)
T KOG2982|consen 198 ----FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWAS----VDALNGFPQLVDLRVSENPLSDPLRGGE 269 (418)
T ss_pred ----cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHH----HHHHcCCchhheeeccCCcccccccCCc
Confidence 4455555555554443322 34456777778888877776622 23467788888888888876554411
Q ss_pred --hHHHhccccccEEeec
Q 039180 724 --ASMIQNFELLRELSIA 739 (790)
Q Consensus 724 --~~~~~~l~~L~~L~l~ 739 (790)
.-.++.+++++.|+=+
T Consensus 270 rr~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 270 RRFLLIARLTKVQVLNGS 287 (418)
T ss_pred ceEEEEeeccceEEecCc
Confidence 1124466777777543
No 61
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.40 E-value=2.5e-07 Score=70.55 Aligned_cols=57 Identities=30% Similarity=0.494 Sum_probs=29.7
Q ss_pred ccceeeccCccccccchhhhhccCcccEEeccCCCCcccch-hhhcccccceecCCcc
Q 039180 525 NLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPK-ALGELTKLRLSDLTDC 581 (790)
Q Consensus 525 ~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~~ 581 (790)
+|++|++++|.++.+.+..|..+++|++|++++|.++.+|+ .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 45555555555555544455555555555555555554443 3455555555555554
No 62
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.38 E-value=1.3e-06 Score=86.98 Aligned_cols=92 Identities=13% Similarity=0.148 Sum_probs=65.1
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCC--CCHHHHHHHH-----HHHhCCCCchhH-HHHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQS--PDIKQIQQEI-----AEKLGLELSEEA-EFRRASR 198 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i-----~~~l~~~~~~~~-~~~~~~~ 198 (790)
.-..++|.|++|+|||||++.+++..... +|+.++|+.+... .++.++++.+ +.+++.+..... ....+..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 34678999999999999999999987654 8999999997766 7999999999 444444221111 1112222
Q ss_pred HHHH-HHcCCcEEEEEeCCCCc
Q 039180 199 MFER-LKNEKKILLILDNTWKS 219 (790)
Q Consensus 199 l~~~-l~~~kr~LlVlDdv~~~ 219 (790)
..+. ...|++.++++|++...
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHh
Confidence 2222 34589999999998544
No 63
>PLN03150 hypothetical protein; Provisional
Probab=98.38 E-value=6.3e-07 Score=102.59 Aligned_cols=106 Identities=24% Similarity=0.334 Sum_probs=88.3
Q ss_pred ecccCCCCCCCCCChhhhccCCceEEEEecCcccc-CCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCC
Q 039180 480 LMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLS-SLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRS 558 (790)
Q Consensus 480 ~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~-~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~ 558 (790)
+.++++.+.+. +|..+ ..+++|+.|+|++|.+. .+|..++.+++|++|+|++|.+.+..|..+++|++|++|+|++|
T Consensus 423 L~L~~n~L~g~-ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 423 LGLDNQGLRGF-IPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500 (623)
T ss_pred EECCCCCcccc-CCHHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC
Confidence 34455555543 77764 79999999999999997 78999999999999999999999887999999999999999999
Q ss_pred CCc-ccchhhhcc-cccceecCCcccccccc
Q 039180 559 DIV-QLPKALGEL-TKLRLSDLTDCFHLKVI 587 (790)
Q Consensus 559 ~l~-~lp~~l~~l-~~L~~L~l~~~~~l~~~ 587 (790)
.++ .+|..++.+ .++..+++.+|..+...
T Consensus 501 ~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 501 SLSGRVPAALGGRLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred cccccCChHHhhccccCceEEecCCccccCC
Confidence 988 889888764 56778888887544443
No 64
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.38 E-value=4.1e-06 Score=85.47 Aligned_cols=151 Identities=17% Similarity=0.186 Sum_probs=93.4
Q ss_pred cCCceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCCchhHHHHHHHHHHHH
Q 039180 124 EDIWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSP-DIKQIQQEIAEKLGLELSEEAEFRRASRMFER 202 (790)
Q Consensus 124 ~~~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~ 202 (790)
..+.+.-+-+||++|+||||||+.++...... |. .++... ++.++ +.++ +.-.+.
T Consensus 44 ~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~--f~-----~~sAv~~gvkdl-r~i~----------------e~a~~~ 99 (436)
T COG2256 44 EAGHLHSMILWGPPGTGKTTLARLIAGTTNAA--FE-----ALSAVTSGVKDL-REII----------------EEARKN 99 (436)
T ss_pred hcCCCceeEEECCCCCCHHHHHHHHHHhhCCc--eE-----EeccccccHHHH-HHHH----------------HHHHHH
Confidence 45677888899999999999999999865322 42 222222 22221 2222 122222
Q ss_pred HHcCCcEEEEEeCCCCc--cCccccCccCCCCCCCcEEEE--EeCChh--HHh-hhCCCceEEccCCCHHHHHHHHHHHh
Q 039180 203 LKNEKKILLILDNTWKS--LDLGTIGIPFGVEHRGCKLLF--TTRDLD--VLI-RMGSEKNFSIGILNEQEAWRLFKIIA 275 (790)
Q Consensus 203 l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ili--TtR~~~--v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~~ 275 (790)
...|++.+|++|.|-.- .+-+.+ +|....|.-|+| ||.+.. +-. ..+...++.+++|+.++-.+++.+.+
T Consensus 100 ~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~ 176 (436)
T COG2256 100 RLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRAL 176 (436)
T ss_pred HhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHH
Confidence 33478999999999433 333333 344566777777 666532 111 14566899999999999999998844
Q ss_pred CCCC------CCcchHHHHHHHHHHhcCCcHH
Q 039180 276 GAYV------ENRELKSTATSVAKACRGLPIA 301 (790)
Q Consensus 276 ~~~~------~~~~~~~~~~~i~~~~~glPla 301 (790)
.... ...-.++..+-+++.++|--.+
T Consensus 177 ~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 177 LDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred hhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 3111 1112245677788888885543
No 65
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.32 E-value=3.5e-06 Score=84.18 Aligned_cols=152 Identities=15% Similarity=0.143 Sum_probs=92.3
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
.+.|.|+|+.|+|||++|+.+++..... ....++++++.-... . ..+...+. +
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~~~~~------~-----------------~~~~~~~~--~ 90 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAELAQA------D-----------------PEVLEGLE--Q 90 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHHHHHh------H-----------------HHHHhhcc--c
Confidence 4678999999999999999999876432 334566665432210 0 11112222 2
Q ss_pred cEEEEEeCCCCcc---Ccc-ccCccCCC-CCCCcEEEEEeCChh---------HHhhhCCCceEEccCCCHHHHHHHHHH
Q 039180 208 KILLILDNTWKSL---DLG-TIGIPFGV-EHRGCKLLFTTRDLD---------VLIRMGSEKNFSIGILNEQEAWRLFKI 273 (790)
Q Consensus 208 r~LlVlDdv~~~~---~~~-~l~~~~~~-~~~gs~iliTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~Lf~~ 273 (790)
.-+||+||++... .|. .+...+.. ...+.++|+||+... +...+.....+.+.+++.++...++..
T Consensus 91 ~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~ 170 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQS 170 (226)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHH
Confidence 2489999997653 222 23222211 123347889888532 122233345899999999999999887
Q ss_pred HhCCCCCCcchHHHHHHHHHHhcCCcHHHHHHHH
Q 039180 274 IAGAYVENRELKSTATSVAKACRGLPIALTIVVK 307 (790)
Q Consensus 274 ~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~ 307 (790)
.+.... ..--++..+.+++.+.|.|..+..+..
T Consensus 171 ~~~~~~-~~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 171 RAARRG-LQLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred HHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 653211 122345677788888888877666543
No 66
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.28 E-value=0.00013 Score=82.30 Aligned_cols=148 Identities=18% Similarity=0.149 Sum_probs=91.5
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhc---cCCC--EEEEEEeCCCCCHHHHHHHHHHHhCCCCch--hHHHHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIED---ELYD--MVVFSEVTQSPDIKQIQQEIAEKLGLELSE--EAEFRRASRMF 200 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~---~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~l~ 200 (790)
-.++.|+|++|+|||+.++.|.+.+... .... .+++|++....+...+++.|++++....+. ......+..++
T Consensus 781 nnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF 860 (1164)
T PTZ00112 781 NQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLF 860 (1164)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHH
Confidence 4678899999999999999998876432 1122 267888887788999999999988443322 12234556666
Q ss_pred HHHHc--CCcEEEEEeCCCCccC--ccccCccCC-CCCCCcEEEE--EeCChhHHh--------hhCCCceEEccCCCHH
Q 039180 201 ERLKN--EKKILLILDNTWKSLD--LGTIGIPFG-VEHRGCKLLF--TTRDLDVLI--------RMGSEKNFSIGILNEQ 265 (790)
Q Consensus 201 ~~l~~--~kr~LlVlDdv~~~~~--~~~l~~~~~-~~~~gs~ili--TtR~~~v~~--------~~~~~~~~~l~~L~~~ 265 (790)
..+.. +...+||||+++.... -+.+...+. ....+++|+| +|...+... .+. ...+...|++.+
T Consensus 861 ~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg-~eeIvF~PYTaE 939 (1164)
T PTZ00112 861 NQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGD 939 (1164)
T ss_pred hhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhcchhhhhhhhhccc-cccccCCCCCHH
Confidence 66532 2346999999976531 111111111 1223555444 333222111 122 224667999999
Q ss_pred HHHHHHHHHhC
Q 039180 266 EAWRLFKIIAG 276 (790)
Q Consensus 266 ~~~~Lf~~~~~ 276 (790)
+..+++..++.
T Consensus 940 QL~dILk~RAe 950 (1164)
T PTZ00112 940 EIEKIIKERLE 950 (1164)
T ss_pred HHHHHHHHHHH
Confidence 99999998875
No 67
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=0.0006 Score=72.15 Aligned_cols=259 Identities=18% Similarity=0.221 Sum_probs=151.5
Q ss_pred EEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC-CchhHHHHHHHHHHHHHHc-CCc
Q 039180 131 IGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLE-LSEEAEFRRASRMFERLKN-EKK 208 (790)
Q Consensus 131 v~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-~~~~~~~~~~~~l~~~l~~-~kr 208 (790)
+.|+|..|+|||+.++.+.+..+....=..+++|++-...+..+++..|+++++.. ....+..+....+.+.+.. ++.
T Consensus 45 ~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~ 124 (366)
T COG1474 45 IIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKT 124 (366)
T ss_pred EEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCe
Confidence 89999999999999999999876653222289999999999999999999999632 2233445556677777763 688
Q ss_pred EEEEEeCCCCccCcc--ccCccCCCCCC-CcEE--EEEeCChhHHhh--------hCCCceEEccCCCHHHHHHHHHHHh
Q 039180 209 ILLILDNTWKSLDLG--TIGIPFGVEHR-GCKL--LFTTRDLDVLIR--------MGSEKNFSIGILNEQEAWRLFKIIA 275 (790)
Q Consensus 209 ~LlVlDdv~~~~~~~--~l~~~~~~~~~-gs~i--liTtR~~~v~~~--------~~~~~~~~l~~L~~~~~~~Lf~~~~ 275 (790)
+++|||+++....-. .+-..+..... .++| |..+-+...... ++. ..+...|.+.+|-..++..++
T Consensus 125 ~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~ 203 (366)
T COG1474 125 VIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKSSLGP-SEIVFPPYTAEELYDILRERV 203 (366)
T ss_pred EEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHH
Confidence 999999998764332 22122211111 3443 334444332222 222 347889999999999998877
Q ss_pred C----CCCCCcchHHHHHHHHHHhcC-CcHHHHHHHHH--HhcC------ChhHHHHHHHHhcCCCCCCcCCCCchhhhh
Q 039180 276 G----AYVENRELKSTATSVAKACRG-LPIALTIVVKA--LRNK------ELPEWKNALQELQMPSETSFDEGVPAEAYS 342 (790)
Q Consensus 276 ~----~~~~~~~~~~~~~~i~~~~~g-lPlai~~~~~~--l~~~------~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~ 342 (790)
. .....+..-+.+..++..-+| .=.||..+-.+ ++.. +.+.-..+..... ..
T Consensus 204 ~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~---------------~~ 268 (366)
T COG1474 204 EEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIE---------------RD 268 (366)
T ss_pred HhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhh---------------HH
Confidence 4 223344444555555555565 33444443332 2211 2222222211111 22
Q ss_pred hHHHHHHHHhHHhHHHHhhhccc-CCCCHHHHHH--HHhhcCccchHHHHHHHHHHHHHHHhccceeee
Q 039180 343 TIELSYKYLGKQLKETILLCSLI-APTSIMDLIN--YTMGFGVLKLEEAHNKLHAWVRQLRDSCLLLVD 408 (790)
Q Consensus 343 ~l~~sy~~L~~~~k~~f~~~s~f-p~~~~~~Li~--~w~~eg~~~~~~~~~~~~~~~~~L~~~sll~~~ 408 (790)
...-....||.+.|..+...... ..+...++-. .++.+.+-. ....+.+++++|...+++...
T Consensus 269 ~~~~~~~~L~~~~ki~L~~i~~~~~~~~~~~~y~~y~~~~~~~~~---~~~~~~~ii~~L~~lgiv~~~ 334 (366)
T COG1474 269 VLEEVLKTLPLHQKIVLLAIVELTVEISTGELYDVYESLCERLRT---SQRRFSDIISELEGLGIVSAS 334 (366)
T ss_pred HHHHHHHcCCHhHHHHHHHHHHhcCCCChHHHHHHHHHHHhhhCc---hHHHHHHHHHHHHhcCeEEee
Confidence 34445777787777654443333 4444443322 122211111 345667888888888888654
No 68
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.23 E-value=3.2e-06 Score=87.54 Aligned_cols=88 Identities=16% Similarity=0.209 Sum_probs=61.2
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCC--CHHHHHHHHHHHhCCCC-chhHHH-----HHHHHHHH
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSP--DIKQIQQEIAEKLGLEL-SEEAEF-----RRASRMFE 201 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~-~~~~~~-----~~~~~l~~ 201 (790)
..+|+|++|+||||||+.+++..... +|+..+||.+.+.. .+.++++.|...+-... +..... ..+....+
T Consensus 171 R~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae 249 (416)
T PRK09376 171 RGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAK 249 (416)
T ss_pred eEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 36899999999999999999998765 89999999998887 77888888763221111 111111 11222333
Q ss_pred HH-HcCCcEEEEEeCCCC
Q 039180 202 RL-KNEKKILLILDNTWK 218 (790)
Q Consensus 202 ~l-~~~kr~LlVlDdv~~ 218 (790)
.+ ..|++++|++|++..
T Consensus 250 ~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 250 RLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHcCCCEEEEEEChHH
Confidence 33 357999999999843
No 69
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.22 E-value=1.9e-05 Score=86.15 Aligned_cols=154 Identities=18% Similarity=0.186 Sum_probs=89.9
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
.+.+.++|++|+||||+|+.+++..... | +.++.... .... .+.+.+ ........++
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~--~---~~l~a~~~-~~~~-ir~ii~----------------~~~~~~~~g~ 92 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGATDAP--F---EALSAVTS-GVKD-LREVIE----------------EARQRRSAGR 92 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCC--E---EEEecccc-cHHH-HHHHHH----------------HHHHhhhcCC
Confidence 4567889999999999999999875321 2 22222211 1111 111111 1111222357
Q ss_pred cEEEEEeCCCCcc--CccccCccCCCCCCCcEEEE--EeCChh--HHh-hhCCCceEEccCCCHHHHHHHHHHHhCCCC-
Q 039180 208 KILLILDNTWKSL--DLGTIGIPFGVEHRGCKLLF--TTRDLD--VLI-RMGSEKNFSIGILNEQEAWRLFKIIAGAYV- 279 (790)
Q Consensus 208 r~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ili--TtR~~~--v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~- 279 (790)
+.+|++|+++... ..+.+...+ ..|..++| ||.+.. +.. .......+.+.+++.++..+++.+.+....
T Consensus 93 ~~vL~IDEi~~l~~~~q~~LL~~l---e~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~ 169 (413)
T PRK13342 93 RTILFIDEIHRFNKAQQDALLPHV---EDGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKER 169 (413)
T ss_pred ceEEEEechhhhCHHHHHHHHHHh---hcCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhc
Confidence 7899999998652 333333322 23444555 334321 111 133447899999999999999988664211
Q ss_pred CC-cchHHHHHHHHHHhcCCcHHHHHHHH
Q 039180 280 EN-RELKSTATSVAKACRGLPIALTIVVK 307 (790)
Q Consensus 280 ~~-~~~~~~~~~i~~~~~glPlai~~~~~ 307 (790)
.. .-.++..+.|++.++|.|..+..+..
T Consensus 170 ~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 170 GLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred CCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 11 23356788899999999876654443
No 70
>PRK08727 hypothetical protein; Validated
Probab=98.17 E-value=2e-05 Score=78.60 Aligned_cols=146 Identities=16% Similarity=0.118 Sum_probs=90.3
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCCc
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEKK 208 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 208 (790)
..+.|+|..|+|||.|++.+++..... ...+.++++.+ ... ......+.+. +.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~------~~~-----------------~~~~~~~~l~--~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQA------AAG-----------------RLRDALEALE--GR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH------hhh-----------------hHHHHHHHHh--cC
Confidence 459999999999999999999886544 23456666432 111 1112233443 33
Q ss_pred EEEEEeCCCCcc---Cccc-cCccCCC-CCCCcEEEEEeCCh---------hHHhhhCCCceEEccCCCHHHHHHHHHHH
Q 039180 209 ILLILDNTWKSL---DLGT-IGIPFGV-EHRGCKLLFTTRDL---------DVLIRMGSEKNFSIGILNEQEAWRLFKII 274 (790)
Q Consensus 209 ~LlVlDdv~~~~---~~~~-l~~~~~~-~~~gs~iliTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 274 (790)
-+||+||+.... .|.. +...+.. ...|..||+|++.. ++...+.....+++++++.++-.++++++
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 599999997542 2221 2221111 12356699999852 22222444568999999999999999987
Q ss_pred hCCCCCCcchHHHHHHHHHHhcCCcHHH
Q 039180 275 AGAYVENRELKSTATSVAKACRGLPIAL 302 (790)
Q Consensus 275 ~~~~~~~~~~~~~~~~i~~~~~glPlai 302 (790)
+.... -.-.++...-|++.+.|-.-.+
T Consensus 175 a~~~~-l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 175 AQRRG-LALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHcC-CCCCHHHHHHHHHhCCCCHHHH
Confidence 75321 1223466777888888755443
No 71
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.17 E-value=3.3e-05 Score=74.47 Aligned_cols=147 Identities=16% Similarity=0.145 Sum_probs=88.9
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhc--------------------cCCCEEEEEEeC-CCCCHHHHHHHHHHHhCCCC
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIED--------------------ELYDMVVFSEVT-QSPDIKQIQQEIAEKLGLEL 187 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~--------------------~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~ 187 (790)
+.+.++|+.|+||||+|+.+....... .+.|. .++... .....+.+ +++.+.+....
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~i-~~i~~~~~~~~ 92 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQV-RELVEFLSRTP 92 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHHH-HHHHHHHccCc
Confidence 678999999999999999998886432 22232 222211 11222111 12222221100
Q ss_pred chhHHHHHHHHHHHHHHcCCcEEEEEeCCCCcc--CccccCccCCCCCCCcEEEEEeCCh-hHHhh-hCCCceEEccCCC
Q 039180 188 SEEAEFRRASRMFERLKNEKKILLILDNTWKSL--DLGTIGIPFGVEHRGCKLLFTTRDL-DVLIR-MGSEKNFSIGILN 263 (790)
Q Consensus 188 ~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR~~-~v~~~-~~~~~~~~l~~L~ 263 (790)
..+.+-++|+||+.... ..+.+...+......+.+|++|++. .+... ......+.+.+++
T Consensus 93 ----------------~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~ 156 (188)
T TIGR00678 93 ----------------QESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLS 156 (188)
T ss_pred ----------------ccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCC
Confidence 02456789999986652 3444544444444566677777653 33222 2344689999999
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcH
Q 039180 264 EQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPI 300 (790)
Q Consensus 264 ~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 300 (790)
.++..+.+.+. + . .++.+..|++.++|.|.
T Consensus 157 ~~~~~~~l~~~-g---i---~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 157 EEALLQWLIRQ-G---I---SEEAAELLLALAGGSPG 186 (188)
T ss_pred HHHHHHHHHHc-C---C---CHHHHHHHHHHcCCCcc
Confidence 99998888776 1 1 24568899999999885
No 72
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.11 E-value=1.9e-07 Score=100.84 Aligned_cols=100 Identities=21% Similarity=0.242 Sum_probs=46.0
Q ss_pred EEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceecCCcccc
Q 039180 504 RVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSDLTDCFH 583 (790)
Q Consensus 504 ~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~ 583 (790)
.+.++++|.+..+..++.-++.|+.|+|++|+++. ...+..|++|++|||++|.+..+|..-..-.+|..|.+++| .
T Consensus 167 ~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~--v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN-~ 243 (1096)
T KOG1859|consen 167 ATASFSYNRLVLMDESLQLLPALESLNLSHNKFTK--VDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNN-A 243 (1096)
T ss_pred hhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhh--hHHHHhcccccccccccchhccccccchhhhhheeeeeccc-H
Confidence 33344444444444444445555555555555544 22445555555555555555544432111112555555554 3
Q ss_pred ccccCchhhccccccceEecccCCc
Q 039180 584 LKVIAPNVISSLTRLEELYMGNCPI 608 (790)
Q Consensus 584 l~~~~~~~l~~l~~L~~L~l~~~~~ 608 (790)
++.+- + +.++.+|+.|++++|.+
T Consensus 244 l~tL~-g-ie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 244 LTTLR-G-IENLKSLYGLDLSYNLL 266 (1096)
T ss_pred HHhhh-h-HHhhhhhhccchhHhhh
Confidence 33331 1 44555555555555543
No 73
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=5.8e-05 Score=80.69 Aligned_cols=154 Identities=12% Similarity=0.131 Sum_probs=91.9
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCC-------------------CEEEEEEeCCCCCHHHHHHHHHHHhCCCCc
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELY-------------------DMVVFSEVTQSPDIKQIQQEIAEKLGLELS 188 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f-------------------~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 188 (790)
.+.+.++|+.|+||||+|+.++......... .-..++..+.....
T Consensus 38 ~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~~~v---------------- 101 (363)
T PRK14961 38 HHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRTKV---------------- 101 (363)
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccccCCH----------------
Confidence 3678899999999999999999876321111 01122221111111
Q ss_pred hhHHHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--CccccCccCCCCCCCcEEEEEeCC-hhHHhh-hCCCceEEcc
Q 039180 189 EEAEFRRASRMFERLK----NEKKILLILDNTWKSL--DLGTIGIPFGVEHRGCKLLFTTRD-LDVLIR-MGSEKNFSIG 260 (790)
Q Consensus 189 ~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR~-~~v~~~-~~~~~~~~l~ 260 (790)
+.+..+.+.+. .+++-++|+|++.... .++.+...+-......++|++|.+ ..+... .+....+++.
T Consensus 102 -----~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~ 176 (363)
T PRK14961 102 -----EEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLK 176 (363)
T ss_pred -----HHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCC
Confidence 11222222221 2355699999997664 344454444444456677776654 333333 3445789999
Q ss_pred CCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHHHH
Q 039180 261 ILNEQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIALT 303 (790)
Q Consensus 261 ~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 303 (790)
+++.++..+.+...+..... .-.++.++.|++.++|.|..+.
T Consensus 177 ~l~~~el~~~L~~~~~~~g~-~i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 177 IISEEKIFNFLKYILIKESI-DTDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred CCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHH
Confidence 99999999888876643221 1224567789999999886433
No 74
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.10 E-value=4.8e-05 Score=79.76 Aligned_cols=154 Identities=18% Similarity=0.247 Sum_probs=98.6
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhh----hccCCCEEEEEEe-CCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAI----EDELYDMVVFSEV-TQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFER 202 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~----~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~ 202 (790)
.+...++|+.|+||||+|+.++.... ...|.|...|... +......++ +++.+.+.....
T Consensus 26 ~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~~~~~~~~p~-------------- 90 (313)
T PRK05564 26 SHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNIIEEVNKKPY-------------- 90 (313)
T ss_pred CceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHHHHHHhcCcc--------------
Confidence 36788999999999999999998752 2356676666542 333344342 223333321111
Q ss_pred HHcCCcEEEEEeCCCC--ccCccccCccCCCCCCCcEEEEEeCChhHH-hh-hCCCceEEccCCCHHHHHHHHHHHhCCC
Q 039180 203 LKNEKKILLILDNTWK--SLDLGTIGIPFGVEHRGCKLLFTTRDLDVL-IR-MGSEKNFSIGILNEQEAWRLFKIIAGAY 278 (790)
Q Consensus 203 l~~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iliTtR~~~v~-~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~ 278 (790)
.+++-++|+|+++. ...++.+...+.....++.+|++|.+.+.. .. ....+.+.+.+++.++....+.+....
T Consensus 91 --~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~- 167 (313)
T PRK05564 91 --EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYND- 167 (313)
T ss_pred --cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhcC-
Confidence 13556777777644 355777767776666788888888664322 22 344579999999999998888765421
Q ss_pred CCCcchHHHHHHHHHHhcCCcHHHH
Q 039180 279 VENRELKSTATSVAKACRGLPIALT 303 (790)
Q Consensus 279 ~~~~~~~~~~~~i~~~~~glPlai~ 303 (790)
..++.++.++..++|.|..+.
T Consensus 168 ----~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 168 ----IKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred ----CCHHHHHHHHHHcCCCHHHHH
Confidence 113446788999999886543
No 75
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.09 E-value=1e-07 Score=102.86 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=85.9
Q ss_pred hhccCCceEEEEecCccccCCChhhhhccccceeeccCccccccchh-hhhccCcccEEeccCCCCcccchhhhcccccc
Q 039180 496 FFKGVKKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIA-IIGKLKNLKILSFVRSDIVQLPKALGELTKLR 574 (790)
Q Consensus 496 ~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~-~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~ 574 (790)
.+.-++.|+.|+|++|++.+.- .+..|++|++|||++|.+..+ |. +...+ +|+.|++++|.++.+- ++.+|++|+
T Consensus 182 SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~v-p~l~~~gc-~L~~L~lrnN~l~tL~-gie~LksL~ 257 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHV-PQLSMVGC-KLQLLNLRNNALTTLR-GIENLKSLY 257 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccc-cccchhhh-hheeeeecccHHHhhh-hHHhhhhhh
Confidence 3467899999999999998775 888999999999999998876 42 22233 4999999999998874 589999999
Q ss_pred eecCCccccccccC-chhhccccccceEecccCCc
Q 039180 575 LSDLTDCFHLKVIA-PNVISSLTRLEELYMGNCPI 608 (790)
Q Consensus 575 ~L~l~~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~ 608 (790)
.|+++.| .+.... ...+..+..|..|+|.+|.+
T Consensus 258 ~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 258 GLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 9999998 333221 12267788999999999987
No 76
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.09 E-value=5.7e-05 Score=88.97 Aligned_cols=210 Identities=14% Similarity=0.218 Sum_probs=123.6
Q ss_pred HHHcCCcEEEEEeCC-CCccC-ccccCccCCCC------CCCcEEEEEeCCh--hHHhhhCCCceEEccCCCHHHHHHHH
Q 039180 202 RLKNEKKILLILDNT-WKSLD-LGTIGIPFGVE------HRGCKLLFTTRDL--DVLIRMGSEKNFSIGILNEQEAWRLF 271 (790)
Q Consensus 202 ~l~~~kr~LlVlDdv-~~~~~-~~~l~~~~~~~------~~gs~iliTtR~~--~v~~~~~~~~~~~l~~L~~~~~~~Lf 271 (790)
.....++.++|+||+ |-+.. .+-+....... ..-.-.+.|.+.. .+...-.....+.+.||+..+...+.
T Consensus 149 ~~~~~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV 228 (849)
T COG3899 149 FTAEEHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLV 228 (849)
T ss_pred HHhccCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHH
Confidence 334567999999998 54421 11111110000 0011123333332 12222334468999999999999999
Q ss_pred HHHhCCCCCCcchHHHHHHHHHHhcCCcHHHHHHHHHHhcC-------ChhHHHHHHHHhcCCCCCCcCCCCchhhhhhH
Q 039180 272 KIIAGAYVENRELKSTATSVAKACRGLPIALTIVVKALRNK-------ELPEWKNALQELQMPSETSFDEGVPAEAYSTI 344 (790)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~-------~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~~l 344 (790)
....+.... ...+..+.|.++..|.|+-+..+-.++... +...|+.-...+.. .... .++...+
T Consensus 229 ~~~l~~~~~--~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~------~~~~-~~vv~~l 299 (849)
T COG3899 229 AATLGCTKL--LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI------LATT-DAVVEFL 299 (849)
T ss_pred HHHhCCccc--ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC------chhh-HHHHHHH
Confidence 888764222 223567889999999999999999888742 23334322222111 1111 1124457
Q ss_pred HHHHHHHhHHhHHHHhhhcccC-CCCHHHHHHHHhhcCccchHHHHHHHHHHHHHHHhccceee-----eCCc-Ce--E-
Q 039180 345 ELSYKYLGKQLKETILLCSLIA-PTSIMDLINYTMGFGVLKLEEAHNKLHAWVRQLRDSCLLLV-----DGSS-KF--F- 414 (790)
Q Consensus 345 ~~sy~~L~~~~k~~f~~~s~fp-~~~~~~Li~~w~~eg~~~~~~~~~~~~~~~~~L~~~sll~~-----~~~~-~~--~- 414 (790)
..-.+.||...+..+...|++. .|+...|-..|-. .....+.++.+.|....++.. .+.. .. |
T Consensus 300 ~~rl~kL~~~t~~Vl~~AA~iG~~F~l~~La~l~~~-------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~ 372 (849)
T COG3899 300 AARLQKLPGTTREVLKAAACIGNRFDLDTLAALAED-------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYK 372 (849)
T ss_pred HHHHhcCCHHHHHHHHHHHHhCccCCHHHHHHHHhh-------chHHHHHHHHHHhHhhceeccccccccccccchhhHH
Confidence 8888999999999999999997 8998888776642 123334445555555544431 1111 11 2
Q ss_pred EeChhhHHHHHHH
Q 039180 415 SMHDVLRDVAISI 427 (790)
Q Consensus 415 ~~h~li~~~~~~~ 427 (790)
-.|+.+++.+-..
T Consensus 373 F~H~~vqqaaY~~ 385 (849)
T COG3899 373 FLHDRVQQAAYNL 385 (849)
T ss_pred hhHHHHHHHHhcc
Confidence 4688888888644
No 77
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=7.3e-05 Score=85.50 Aligned_cols=159 Identities=15% Similarity=0.151 Sum_probs=94.6
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccC-------------------CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCch
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDEL-------------------YDMVVFSEVTQSPDIKQIQQEIAEKLGLELSE 189 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~-------------------f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 189 (790)
+.+.++|+.|+||||+|+.++........ |.-+++++......+..+ ++|.+.
T Consensus 39 HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDdI-ReLie~------- 110 (944)
T PRK14949 39 HAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDT-RELLDN------- 110 (944)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCHHHH-HHHHHH-------
Confidence 56789999999999999999987642211 111222322211112211 222221
Q ss_pred hHHHHHHHHHHHHHHcCCcEEEEEeCCCCc--cCccccCccCCCCCCCcEEEEEeCC-hhHHhh-hCCCceEEccCCCHH
Q 039180 190 EAEFRRASRMFERLKNEKKILLILDNTWKS--LDLGTIGIPFGVEHRGCKLLFTTRD-LDVLIR-MGSEKNFSIGILNEQ 265 (790)
Q Consensus 190 ~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtR~-~~v~~~-~~~~~~~~l~~L~~~ 265 (790)
+...-..+++-++|||++... ...+.+...+-......++|++|.+ ..+... ......+.+.+++.+
T Consensus 111 ---------v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~e 181 (944)
T PRK14949 111 ---------VQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQD 181 (944)
T ss_pred ---------HHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHH
Confidence 111112357789999999765 3444444444333345565555544 444433 445679999999999
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHHHHHH
Q 039180 266 EAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIALTIV 305 (790)
Q Consensus 266 ~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 305 (790)
+..+.+.+.+.... .....+..+.|++.++|.|..+..+
T Consensus 182 EI~~~L~~il~~Eg-I~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 182 EIGTQLNHILTQEQ-LPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred HHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 99999888764322 1223466788999999988654444
No 78
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.06 E-value=2e-05 Score=82.18 Aligned_cols=89 Identities=13% Similarity=0.186 Sum_probs=62.5
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCC--CCHHHHHHHHHH-----HhCCCCchh-HHHHHHHHHHH
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQS--PDIKQIQQEIAE-----KLGLELSEE-AEFRRASRMFE 201 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~-----~l~~~~~~~-~~~~~~~~l~~ 201 (790)
.++|+|++|+|||||++.+++..... +|+..+|+.+.+. .++.++++.+.. .++.+.... .....+....+
T Consensus 170 ~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae 248 (415)
T TIGR00767 170 RGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAK 248 (415)
T ss_pred EEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHH
Confidence 47899999999999999999987654 8999999999865 789999999943 333321111 11112222223
Q ss_pred HH-HcCCcEEEEEeCCCCc
Q 039180 202 RL-KNEKKILLILDNTWKS 219 (790)
Q Consensus 202 ~l-~~~kr~LlVlDdv~~~ 219 (790)
.+ .+|++++|++|++...
T Consensus 249 ~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 249 RLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHcCCCeEEEEEChhHH
Confidence 33 4689999999998543
No 79
>PRK09087 hypothetical protein; Validated
Probab=98.04 E-value=2.9e-05 Score=76.61 Aligned_cols=142 Identities=13% Similarity=0.075 Sum_probs=87.7
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
-+.+.|+|..|+|||+|++.++..... .+++.. .+..+ ....+.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~-------~~i~~~------~~~~~--------------------~~~~~~~-- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDA-------LLIHPN------EIGSD--------------------AANAAAE-- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCC-------EEecHH------HcchH--------------------HHHhhhc--
Confidence 366899999999999999988876421 133221 11111 1112211
Q ss_pred cEEEEEeCCCCcc-CccccCccCCC-CCCCcEEEEEeCC---------hhHHhhhCCCceEEccCCCHHHHHHHHHHHhC
Q 039180 208 KILLILDNTWKSL-DLGTIGIPFGV-EHRGCKLLFTTRD---------LDVLIRMGSEKNFSIGILNEQEAWRLFKIIAG 276 (790)
Q Consensus 208 r~LlVlDdv~~~~-~~~~l~~~~~~-~~~gs~iliTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 276 (790)
-+|++||+.... +-+.+...+.. ...|..+|+|++. .+....+....++++++++.++-.+++++.+.
T Consensus 89 -~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 89 -GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred -CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHH
Confidence 278889996542 11122222211 2346779999874 23334456667999999999999999998885
Q ss_pred CCCCCcchHHHHHHHHHHhcCCcHHHHHHH
Q 039180 277 AYVENRELKSTATSVAKACRGLPIALTIVV 306 (790)
Q Consensus 277 ~~~~~~~~~~~~~~i~~~~~glPlai~~~~ 306 (790)
... ..--+++.+-|++.+.|..-++..+-
T Consensus 168 ~~~-~~l~~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 168 DRQ-LYVDPHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred HcC-CCCCHHHHHHHHHHhhhhHHHHHHHH
Confidence 321 12235677888888888776665433
No 80
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.03 E-value=6.9e-05 Score=83.98 Aligned_cols=159 Identities=14% Similarity=0.155 Sum_probs=95.6
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhcc-------------------CCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCch
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDE-------------------LYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSE 189 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~-------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 189 (790)
+.+.++|..|+||||+|+.+.+.+.-.. .|.-+++++......+.++ +++++..
T Consensus 39 HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDdI-ReLIe~a------ 111 (830)
T PRK07003 39 HAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEM-AALLERA------ 111 (830)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHHHH-HHHHHHH------
Confidence 5677999999999999999888753211 1112333333322222221 1111111
Q ss_pred hHHHHHHHHHHHHHHcCCcEEEEEeCCCCcc--CccccCccCCCCCCCcEEEEEeCCh-hHHhh-hCCCceEEccCCCHH
Q 039180 190 EAEFRRASRMFERLKNEKKILLILDNTWKSL--DLGTIGIPFGVEHRGCKLLFTTRDL-DVLIR-MGSEKNFSIGILNEQ 265 (790)
Q Consensus 190 ~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR~~-~v~~~-~~~~~~~~l~~L~~~ 265 (790)
...-..++.-++|||++.... .++.+...+-......++|+||.+. .+... .+....+.+..++.+
T Consensus 112 ----------~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~e 181 (830)
T PRK07003 112 ----------VYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAG 181 (830)
T ss_pred ----------HhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHH
Confidence 111112456689999998764 3555555444444567777777763 33322 445678999999999
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCc-HHHHHH
Q 039180 266 EAWRLFKIIAGAYVENRELKSTATSVAKACRGLP-IALTIV 305 (790)
Q Consensus 266 ~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~~ 305 (790)
+..+.+.+....... ....+..+.|++.++|.. -|+..+
T Consensus 182 eIv~~L~~Il~~EgI-~id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 182 HIVSHLERILGEERI-AFEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999887753322 223566788999998855 455443
No 81
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.02 E-value=0.0009 Score=76.31 Aligned_cols=181 Identities=16% Similarity=0.060 Sum_probs=97.7
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCC---EEEEEEeCC---CCCHHHHHHHH---------------HHHhC
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYD---MVVFSEVTQ---SPDIKQIQQEI---------------AEKLG 184 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~---~~~wv~~~~---~~~~~~~~~~i---------------~~~l~ 184 (790)
.....+.|+|++|+||||+|+.+++..+....+. ..-|+.+.. ..+...+...+ +...+
T Consensus 173 ~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~g 252 (615)
T TIGR02903 173 PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETG 252 (615)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcC
Confidence 3455799999999999999999988764433221 123443332 11222221111 11111
Q ss_pred CCC------------------chhHHHHHHHHHHHHHHcCCcEEEEEeCCCCc--cCccccCccCCCCCCCcEEEE--Ee
Q 039180 185 LEL------------------SEEAEFRRASRMFERLKNEKKILLILDNTWKS--LDLGTIGIPFGVEHRGCKLLF--TT 242 (790)
Q Consensus 185 ~~~------------------~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ili--Tt 242 (790)
... ...-+...+..+.+.+.+ +++.++-|+.|.. ..|+.+...+....+...++| ||
T Consensus 253 l~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~-~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt 331 (615)
T TIGR02903 253 VPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLED-KRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATT 331 (615)
T ss_pred CCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhh-CeEEeecceeccCCcccchhhhhhcccCccceEEEEEecc
Confidence 110 001112234566666664 6788886666544 357777666655555555555 56
Q ss_pred CChhH-Hhh-hCCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHHHHHHHHH
Q 039180 243 RDLDV-LIR-MGSEKNFSIGILNEQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIALTIVVKA 308 (790)
Q Consensus 243 R~~~v-~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~ 308 (790)
++... ... ......+.+.+++.++.+.++.+.+...... -.+++.+.|.+....-+.|+..++.+
T Consensus 332 ~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~-ls~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 332 RDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVH-LAAGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred ccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 64321 111 2233578899999999999999877532111 11344444555444345555555443
No 82
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.01 E-value=2.1e-05 Score=82.57 Aligned_cols=135 Identities=21% Similarity=0.268 Sum_probs=77.5
Q ss_pred ccCCceEEEEecCccccCCChhhhhccccceeeccCcc-ccccchhhhhccCcccEEeccCC-CCcccchhhhcccccce
Q 039180 498 KGVKKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSI-LRDIDIAIIGKLKNLKILSFVRS-DIVQLPKALGELTKLRL 575 (790)
Q Consensus 498 ~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~-l~~l~p~~i~~l~~L~~L~L~~~-~l~~lp~~l~~l~~L~~ 575 (790)
..+++++.|++++|.++.+|. --.+|+.|.+++|. ++.+ |..+ ..+|++|++++| .+..+|.. |++
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsL-P~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~ 116 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTL-PGSI--PEGLEKLTVCHCPEISGLPES------VRS 116 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccC-Cchh--hhhhhheEccCcccccccccc------cce
Confidence 456888888888888888772 22358888888765 5444 5544 257888888888 67677754 444
Q ss_pred ecCCcc--ccccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCcccccc
Q 039180 576 SDLTDC--FHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFLTQ 653 (790)
Q Consensus 576 L~l~~~--~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 653 (790)
|++.++ ..+..+|+ +|+.|.+.++.... ....+.. -.++|+.|++++|....+|.. ...
T Consensus 117 L~L~~n~~~~L~~LPs-------sLk~L~I~~~n~~~---------~~~lp~~--LPsSLk~L~Is~c~~i~LP~~-LP~ 177 (426)
T PRK15386 117 LEIKGSATDSIKNVPN-------GLTSLSINSYNPEN---------QARIDNL--ISPSLKTLSLTGCSNIILPEK-LPE 177 (426)
T ss_pred EEeCCCCCcccccCcc-------hHhheecccccccc---------ccccccc--cCCcccEEEecCCCcccCccc-ccc
Confidence 445443 22333433 35566654322100 0000000 124688888877765444433 235
Q ss_pred ccceeEEEec
Q 039180 654 KLERFKISIG 663 (790)
Q Consensus 654 ~L~~L~l~~~ 663 (790)
+|+.|.++.+
T Consensus 178 SLk~L~ls~n 187 (426)
T PRK15386 178 SLQSITLHIE 187 (426)
T ss_pred cCcEEEeccc
Confidence 6777777654
No 83
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.00 E-value=5.7e-05 Score=74.33 Aligned_cols=161 Identities=20% Similarity=0.193 Sum_probs=94.8
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
...+.|+|..|+|||.|.+++++.......-..++++++. +..+.+...+.. .....+.+.+..
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~------~f~~~~~~~~~~--------~~~~~~~~~~~~-- 97 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAE------EFIREFADALRD--------GEIEEFKDRLRS-- 97 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHH------HHHHHHHHHHHT--------TSHHHHHHHHCT--
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHH------HHHHHHHHHHHc--------ccchhhhhhhhc--
Confidence 3457899999999999999999987654333346676543 444555544432 112345555553
Q ss_pred cEEEEEeCCCCccC---ccc-cCccCCC-CCCCcEEEEEeCCh---------hHHhhhCCCceEEccCCCHHHHHHHHHH
Q 039180 208 KILLILDNTWKSLD---LGT-IGIPFGV-EHRGCKLLFTTRDL---------DVLIRMGSEKNFSIGILNEQEAWRLFKI 273 (790)
Q Consensus 208 r~LlVlDdv~~~~~---~~~-l~~~~~~-~~~gs~iliTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~ 273 (790)
-=+|++||++.... |.. +...+.. ...|.+||+|++.. +....+...-++++++.+.++-.+++++
T Consensus 98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~ 177 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQK 177 (219)
T ss_dssp SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHH
T ss_pred CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHH
Confidence 34889999976532 221 1111111 23466899999642 2333355667999999999999999998
Q ss_pred HhCCCCCCcchHHHHHHHHHHhcCCcHHHHHH
Q 039180 274 IAGAYVENRELKSTATSVAKACRGLPIALTIV 305 (790)
Q Consensus 274 ~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 305 (790)
.+...... --+++++-|++.+.+..-.+..+
T Consensus 178 ~a~~~~~~-l~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 178 KAKERGIE-LPEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHTT---S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred HHHHhCCC-CcHHHHHHHHHhhcCCHHHHHHH
Confidence 88532221 23466777777776655444433
No 84
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=0.00012 Score=80.43 Aligned_cols=152 Identities=14% Similarity=0.161 Sum_probs=92.9
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCC-----------------------CEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELY-----------------------DMVVFSEVTQSPDIKQIQQEIAEKLGL 185 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f-----------------------~~~~wv~~~~~~~~~~~~~~i~~~l~~ 185 (790)
+-+.++|+.|+||||+|+.++...--.... .-++.++......+.+
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~----------- 112 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDD----------- 112 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHH-----------
Confidence 578899999999999999999876322111 0122222222222211
Q ss_pred CCchhHHHHHHHHHHHHHH----cCCcEEEEEeCCCCc--cCccccCccCCCCCCCcEEEE-EeCChhHHhh-hCCCceE
Q 039180 186 ELSEEAEFRRASRMFERLK----NEKKILLILDNTWKS--LDLGTIGIPFGVEHRGCKLLF-TTRDLDVLIR-MGSEKNF 257 (790)
Q Consensus 186 ~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ili-TtR~~~v~~~-~~~~~~~ 257 (790)
+..+.+... .+++-++|+|+++.. ..++.+...+......+.+|+ ||+...+... ......+
T Consensus 113 ----------Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ 182 (507)
T PRK06645 113 ----------IRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRY 182 (507)
T ss_pred ----------HHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEE
Confidence 222222221 246789999999875 345555555544445566554 5554555444 3445689
Q ss_pred EccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHHH
Q 039180 258 SIGILNEQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIAL 302 (790)
Q Consensus 258 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 302 (790)
++.+++.++..+.+.+.+....... ..+....|++.++|.+..+
T Consensus 183 ef~~ls~~el~~~L~~i~~~egi~i-e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 183 DLRRLSFEEIFKLLEYITKQENLKT-DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred EccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 9999999999999988875332221 2456677999999977443
No 85
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.99 E-value=7.3e-05 Score=79.79 Aligned_cols=172 Identities=16% Similarity=0.115 Sum_probs=92.0
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCC-EEEEEEeCCCCCHHHHHHHHH------HHhCCC-CchhHHHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYD-MVVFSEVTQSPDIKQIQQEIA------EKLGLE-LSEEAEFRRASRM 199 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~------~~l~~~-~~~~~~~~~~~~l 199 (790)
.+.+.++|+.|+||||+|+.+++..... .+. ..+.+++++..+. ....+. ..++.. .......+....+
T Consensus 36 ~~~lll~Gp~GtGKT~la~~~~~~l~~~-~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (337)
T PRK12402 36 LPHLLVQGPPGSGKTAAVRALARELYGD-PWENNFTEFNVADFFDQ--GKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHV 112 (337)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCc-ccccceEEechhhhhhc--chhhhhcCcchhhhhhhhhhhccchHHHHHHH
Confidence 3457899999999999999999876432 121 2344544332110 000000 000000 0000111223333
Q ss_pred HHHHH-----cCCcEEEEEeCCCCcc--CccccCccCCCCCCCcEEEEEeCChh-HHhh-hCCCceEEccCCCHHHHHHH
Q 039180 200 FERLK-----NEKKILLILDNTWKSL--DLGTIGIPFGVEHRGCKLLFTTRDLD-VLIR-MGSEKNFSIGILNEQEAWRL 270 (790)
Q Consensus 200 ~~~l~-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~L 270 (790)
.+... .+.+-+||+||+.... ....+...+......+++|+||.... +... ......+.+.+++.++..++
T Consensus 113 ~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~ 192 (337)
T PRK12402 113 LKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDV 192 (337)
T ss_pred HHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHH
Confidence 32221 1234589999996552 12223333322334567888775432 2222 23345788999999999999
Q ss_pred HHHHhCCCCCCcchHHHHHHHHHHhcCCcHHHH
Q 039180 271 FKIIAGAYVENRELKSTATSVAKACRGLPIALT 303 (790)
Q Consensus 271 f~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 303 (790)
+.+.+...... -..+..+.+++.++|.+-.+.
T Consensus 193 l~~~~~~~~~~-~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 193 LESIAEAEGVD-YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred HHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 88876422221 235678889999988765543
No 86
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.98 E-value=8.3e-06 Score=56.78 Aligned_cols=39 Identities=26% Similarity=0.418 Sum_probs=20.1
Q ss_pred ccceeeccCccccccchhhhhccCcccEEeccCCCCcccc
Q 039180 525 NLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLP 564 (790)
Q Consensus 525 ~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp 564 (790)
+|++|++++|.++.+ |..+++|++|++|++++|.++.+|
T Consensus 2 ~L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDL-PPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCCCCc
Confidence 455555555555554 444555555555555555555443
No 87
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.97 E-value=7.5e-05 Score=81.64 Aligned_cols=168 Identities=14% Similarity=0.116 Sum_probs=105.4
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
..-+.|+|..|+|||.|++++++.......-..+++++. .++...+...++.. .+......+.+. .
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~------~~~~~~~~~~~~--~ 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG------DEFARKAVDILQKT------HKEIEQFKNEIC--Q 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHHh------hhHHHHHHHHhc--c
Confidence 456899999999999999999987654322234555544 34556666555321 022334444444 2
Q ss_pred cEEEEEeCCCCcc---Cc-cccCccCCC-CCCCcEEEEEeCCh---------hHHhhhCCCceEEccCCCHHHHHHHHHH
Q 039180 208 KILLILDNTWKSL---DL-GTIGIPFGV-EHRGCKLLFTTRDL---------DVLIRMGSEKNFSIGILNEQEAWRLFKI 273 (790)
Q Consensus 208 r~LlVlDdv~~~~---~~-~~l~~~~~~-~~~gs~iliTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~ 273 (790)
.-+||+||+.... .+ +.+...+.. ...|..||+|+... .+...+...-++.+++++.++-.+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 3588999996542 11 223222222 13345688887642 2222344556888999999999999999
Q ss_pred HhCCCCC-CcchHHHHHHHHHHhcCCcHHHHHHHHHH
Q 039180 274 IAGAYVE-NRELKSTATSVAKACRGLPIALTIVVKAL 309 (790)
Q Consensus 274 ~~~~~~~-~~~~~~~~~~i~~~~~glPlai~~~~~~l 309 (790)
.+..... ..-.+++..-|++.++|.|..+.-+...+
T Consensus 287 ~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 287 EIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 8853221 13346788899999999998776665433
No 88
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.00015 Score=80.22 Aligned_cols=152 Identities=14% Similarity=0.104 Sum_probs=92.0
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCE------------------EEEEEeCCCCCHHHHHHHHHHHhCCCCchh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDM------------------VVFSEVTQSPDIKQIQQEIAEKLGLELSEE 190 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~------------------~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 190 (790)
+.+.++|+.|+||||+|+.++......+.+.. +.+++.+....+
T Consensus 37 ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~~~~v------------------ 98 (504)
T PRK14963 37 HAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAASNNSV------------------ 98 (504)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccccCCH------------------
Confidence 66799999999999999999988643222221 222222211111
Q ss_pred HHHHHHHHHHHHHH----cCCcEEEEEeCCCCc--cCccccCccCCCCCCCcEEEEEeCC-hhHHhh-hCCCceEEccCC
Q 039180 191 AEFRRASRMFERLK----NEKKILLILDNTWKS--LDLGTIGIPFGVEHRGCKLLFTTRD-LDVLIR-MGSEKNFSIGIL 262 (790)
Q Consensus 191 ~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtR~-~~v~~~-~~~~~~~~l~~L 262 (790)
+.+..+.+.+. .+++-++|+|+++.. ..++.+...+........+|++|.. ..+... ......+.+.++
T Consensus 99 ---d~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~l 175 (504)
T PRK14963 99 ---EDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRL 175 (504)
T ss_pred ---HHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCC
Confidence 11122222221 246679999999755 2355554444443445555555543 333332 334568999999
Q ss_pred CHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHHH
Q 039180 263 NEQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIAL 302 (790)
Q Consensus 263 ~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 302 (790)
+.++..+.+.+.+...... ..++....|++.++|.+.-+
T Consensus 176 s~~el~~~L~~i~~~egi~-i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 176 TEEEIAGKLRRLLEAEGRE-AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred CHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 9999999998877532221 13456788999999988544
No 89
>PLN03025 replication factor C subunit; Provisional
Probab=97.95 E-value=8.8e-05 Score=78.00 Aligned_cols=156 Identities=12% Similarity=0.086 Sum_probs=88.0
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCC-EEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYD-MVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
+-+.++|++|+||||+|..+++..... .|. .++-++.++...... .+++.+.+..... ....++
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~eln~sd~~~~~~-vr~~i~~~~~~~~-------------~~~~~~ 99 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHELLGP-NYKEAVLELNASDDRGIDV-VRNKIKMFAQKKV-------------TLPPGR 99 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHhcc-cCccceeeecccccccHHH-HHHHHHHHHhccc-------------cCCCCC
Confidence 346799999999999999999886332 122 233333333333222 2222211110000 001235
Q ss_pred cEEEEEeCCCCcc--CccccCccCCCCCCCcEEEEEeCCh-hHHhh-hCCCceEEccCCCHHHHHHHHHHHhCCCCCCcc
Q 039180 208 KILLILDNTWKSL--DLGTIGIPFGVEHRGCKLLFTTRDL-DVLIR-MGSEKNFSIGILNEQEAWRLFKIIAGAYVENRE 283 (790)
Q Consensus 208 r~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~ 283 (790)
.-++|+|+++... ....+...+-.....+++++++... .+... ......+++.+++.++..+.+...+......-
T Consensus 100 ~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i- 178 (319)
T PLN03025 100 HKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPY- 178 (319)
T ss_pred eEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCC-
Confidence 6799999997663 2222322232233456777766542 22222 22346899999999999998888775322211
Q ss_pred hHHHHHHHHHHhcCCcH
Q 039180 284 LKSTATSVAKACRGLPI 300 (790)
Q Consensus 284 ~~~~~~~i~~~~~glPl 300 (790)
..+..+.|++.++|-..
T Consensus 179 ~~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 179 VPEGLEAIIFTADGDMR 195 (319)
T ss_pred CHHHHHHHHHHcCCCHH
Confidence 24567889999998653
No 90
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.95 E-value=0.00011 Score=73.80 Aligned_cols=154 Identities=18% Similarity=0.162 Sum_probs=97.3
Q ss_pred cCCceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHH
Q 039180 124 EDIWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERL 203 (790)
Q Consensus 124 ~~~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l 203 (790)
+.+.++-+.+||++|+||||||+.+....+... ..+|..|....-..-.+.|+++-. -...+
T Consensus 158 eq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq--------------~~~~l 219 (554)
T KOG2028|consen 158 EQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQ--------------NEKSL 219 (554)
T ss_pred HcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHH--------------HHHhh
Confidence 567888999999999999999999998765332 456766654443333444444321 01112
Q ss_pred HcCCcEEEEEeCCCC--ccCccccCccCCCCCCCcEEEE--EeCChh---HHhhhCCCceEEccCCCHHHHHHHHHHHhC
Q 039180 204 KNEKKILLILDNTWK--SLDLGTIGIPFGVEHRGCKLLF--TTRDLD---VLIRMGSEKNFSIGILNEQEAWRLFKIIAG 276 (790)
Q Consensus 204 ~~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~ili--TtR~~~---v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 276 (790)
.++|.+|.+|+|-. ..+-+. .+|...+|.-++| ||.+.. .+..+....++.++.|..++...++.+...
T Consensus 220 -~krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia 295 (554)
T KOG2028|consen 220 -TKRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIA 295 (554)
T ss_pred -hcceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHH
Confidence 35889999999842 333332 3445677887777 666532 222356678999999999999999987442
Q ss_pred ---C------CCCCc---chHHHHHHHHHHhcCCc
Q 039180 277 ---A------YVENR---ELKSTATSVAKACRGLP 299 (790)
Q Consensus 277 ---~------~~~~~---~~~~~~~~i~~~~~glP 299 (790)
+ ....+ -...+.+-++..|.|-.
T Consensus 296 ~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 296 SLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred hhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 1 11111 12345566667777744
No 91
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.00011 Score=81.40 Aligned_cols=159 Identities=13% Similarity=0.128 Sum_probs=93.9
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhcc-------------------CCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCc
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDE-------------------LYDMVVFSEVTQSPDIKQIQQEIAEKLGLELS 188 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~-------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 188 (790)
.+.+.++|+.|+||||+|+.+++..--.. .+.-++.++.+....+.++ ++++...
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~~~VddI-Reli~~~----- 110 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDT-RELLDNV----- 110 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccccCCHHHH-HHHHHHH-----
Confidence 36789999999999999999988753211 1111233332222222211 1111111
Q ss_pred hhHHHHHHHHHHHHHHcCCcEEEEEeCCCCcc--CccccCccCCCCCCCcEEEEEeCC-hhHHhh-hCCCceEEccCCCH
Q 039180 189 EEAEFRRASRMFERLKNEKKILLILDNTWKSL--DLGTIGIPFGVEHRGCKLLFTTRD-LDVLIR-MGSEKNFSIGILNE 264 (790)
Q Consensus 189 ~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR~-~~v~~~-~~~~~~~~l~~L~~ 264 (790)
...-..+++-++|+|++.... ..+.+...+-....+.++|++|.+ ..+... ......+.+.+++.
T Consensus 111 -----------~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~ 179 (702)
T PRK14960 111 -----------PYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAV 179 (702)
T ss_pred -----------hhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCH
Confidence 111113566799999997652 344444444333456677777765 333322 45567999999999
Q ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHHHHH
Q 039180 265 QEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIALTI 304 (790)
Q Consensus 265 ~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 304 (790)
++..+.+.+.+..... ....+....|++.++|.+..+..
T Consensus 180 eEI~k~L~~Il~kEgI-~id~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 180 DEITKHLGAILEKEQI-AADQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred HHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 9999998887753322 22245678899999997754443
No 92
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=9.6e-05 Score=81.73 Aligned_cols=155 Identities=12% Similarity=0.127 Sum_probs=93.3
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhcc------------------------CCCEEEEEEeCCCCCHHHHHHHHHHHhC
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDE------------------------LYDMVVFSEVTQSPDIKQIQQEIAEKLG 184 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~------------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 184 (790)
+.+.++|..|+||||+|+.+.+..--.. .|.-+++++......+.+
T Consensus 39 HA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~~gVDd---------- 108 (700)
T PRK12323 39 HAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDE---------- 108 (700)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccccCCHHH----------
Confidence 5678999999999999999988763210 011122332222222211
Q ss_pred CCCchhHHHHHHHHHHHHH----HcCCcEEEEEeCCCCc--cCccccCccCCCCCCCcEEEE-EeCChhHHhh-hCCCce
Q 039180 185 LELSEEAEFRRASRMFERL----KNEKKILLILDNTWKS--LDLGTIGIPFGVEHRGCKLLF-TTRDLDVLIR-MGSEKN 256 (790)
Q Consensus 185 ~~~~~~~~~~~~~~l~~~l----~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ili-TtR~~~v~~~-~~~~~~ 256 (790)
+..+.+.+ ..++.-++|+|++... ..++.+...+-.-..+.++|+ ||....+... .+....
T Consensus 109 -----------IReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~ 177 (700)
T PRK12323 109 -----------MAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQ 177 (700)
T ss_pred -----------HHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHh
Confidence 22222222 2356779999999766 344444444433334555554 5544555443 445578
Q ss_pred EEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHHHHHH
Q 039180 257 FSIGILNEQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIALTIV 305 (790)
Q Consensus 257 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 305 (790)
+.+..++.++..+.+.+.+...... ...+..+.|++.++|.|.....+
T Consensus 178 f~f~~ls~eei~~~L~~Il~~Egi~-~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 178 FNLKQMPPGHIVSHLDAILGEEGIA-HEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred cccCCCChHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999999888776432222 22455678999999988654443
No 93
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.94 E-value=8.9e-05 Score=74.00 Aligned_cols=151 Identities=14% Similarity=0.094 Sum_probs=91.8
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
.+.+.|+|+.|+|||+|++.+++..... -..+.++++..... ....+.+.+.+
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~-----------------------~~~~~~~~~~~-- 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAW-----------------------FVPEVLEGMEQ-- 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhh-----------------------hhHHHHHHhhh--
Confidence 3578999999999999999999876533 23466766643100 00112222322
Q ss_pred cEEEEEeCCCCc---cCccc-cCccCCC-CCCC-cEEEEEeCCh---------hHHhhhCCCceEEccCCCHHHHHHHHH
Q 039180 208 KILLILDNTWKS---LDLGT-IGIPFGV-EHRG-CKLLFTTRDL---------DVLIRMGSEKNFSIGILNEQEAWRLFK 272 (790)
Q Consensus 208 r~LlVlDdv~~~---~~~~~-l~~~~~~-~~~g-s~iliTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~ 272 (790)
--++++||+... ..|+. +...+.. ...| .++|+||+.. +....+....++++++++.++-.++++
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 247899999654 23332 1122211 1123 4799999853 233335556799999999999999988
Q ss_pred HHhCCCCCCcchHHHHHHHHHHhcCCcHHHHHHH
Q 039180 273 IIAGAYVENRELKSTATSVAKACRGLPIALTIVV 306 (790)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~ 306 (790)
+.+.... -.--+++..-|++.+.|..-++..+-
T Consensus 178 ~~a~~~~-~~l~~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 178 LRARLRG-FELPEDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred HHHHHcC-CCCCHHHHHHHHHhhcCCHHHHHHHH
Confidence 8664321 22235677788888887655444433
No 94
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.90 E-value=3.4e-05 Score=81.02 Aligned_cols=61 Identities=10% Similarity=0.145 Sum_probs=30.7
Q ss_pred hccccceeeccCccccccchhhhhccCcccEEeccCC-CCcccchhhhcccccceecCCccccccccC
Q 039180 522 LLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRS-DIVQLPKALGELTKLRLSDLTDCFHLKVIA 588 (790)
Q Consensus 522 ~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~-~l~~lp~~l~~l~~L~~L~l~~~~~l~~~~ 588 (790)
.+.++++|++++|.++.+ | .-..+|++|.+++| .++.+|..+ .++|++|++++|..+..+|
T Consensus 50 ~~~~l~~L~Is~c~L~sL-P---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 50 EARASGRLYIKDCDIESL-P---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred HhcCCCEEEeCCCCCccc-C---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence 345566666666655554 4 11224666666554 444555433 2355555565554444433
No 95
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00021 Score=78.31 Aligned_cols=163 Identities=17% Similarity=0.164 Sum_probs=92.7
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccC-------------------CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCch
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDEL-------------------YDMVVFSEVTQSPDIKQIQQEIAEKLGLELSE 189 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~-------------------f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 189 (790)
+.+.++|+.|+||||+|+.++........ +..+..++.+.......+ +.|.+....
T Consensus 37 ~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~~gid~i-R~i~~~~~~---- 111 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASNRGIDEI-RKIRDAVGY---- 111 (472)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcccCCHHHH-HHHHHHHhh----
Confidence 56889999999999999999887532110 111233333322222222 122221110
Q ss_pred hHHHHHHHHHHHHHHcCCcEEEEEeCCCCc--cCccccCccCCCCCCCcEEEEEeCC-hhHHhh-hCCCceEEccCCCHH
Q 039180 190 EAEFRRASRMFERLKNEKKILLILDNTWKS--LDLGTIGIPFGVEHRGCKLLFTTRD-LDVLIR-MGSEKNFSIGILNEQ 265 (790)
Q Consensus 190 ~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtR~-~~v~~~-~~~~~~~~l~~L~~~ 265 (790)
.-..+++-++|+|++... ...+.+...+........+|++|.+ ..+... ......+.+.+++.+
T Consensus 112 ------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~ 179 (472)
T PRK14962 112 ------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDE 179 (472)
T ss_pred ------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHH
Confidence 001245679999998654 2334443343332334444444443 444333 345568999999999
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHHhcC-CcHHHHHHHHHH
Q 039180 266 EAWRLFKIIAGAYVENRELKSTATSVAKACRG-LPIALTIVVKAL 309 (790)
Q Consensus 266 ~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~g-lPlai~~~~~~l 309 (790)
+....+.+.+..... .-.++....|++.++| ++.++..+..+.
T Consensus 180 el~~~L~~i~~~egi-~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 180 LIIKRLQEVAEAEGI-EIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999888887742221 1224567788888865 567766666543
No 96
>PRK04195 replication factor C large subunit; Provisional
Probab=97.87 E-value=0.00082 Score=74.89 Aligned_cols=159 Identities=16% Similarity=0.128 Sum_probs=92.8
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
.+.+.|+|++|+||||+|+.+++... ++ ++-+++++..+...+ ..++....... .+...+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~~i-~~~i~~~~~~~--------------sl~~~~ 98 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTADVI-ERVAGEAATSG--------------SLFGAR 98 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHHHH-HHHHHHhhccC--------------cccCCC
Confidence 57899999999999999999998862 33 344455543333222 22222211100 011125
Q ss_pred cEEEEEeCCCCccC------ccccCccCCCCCCCcEEEEEeCCh-hHHh-h-hCCCceEEccCCCHHHHHHHHHHHhCCC
Q 039180 208 KILLILDNTWKSLD------LGTIGIPFGVEHRGCKLLFTTRDL-DVLI-R-MGSEKNFSIGILNEQEAWRLFKIIAGAY 278 (790)
Q Consensus 208 r~LlVlDdv~~~~~------~~~l~~~~~~~~~gs~iliTtR~~-~v~~-~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~ 278 (790)
+-+||+|+++.... ...+...+. ..+..||+|+.+. .... . -.....+.+.+++.++....+.+.+...
T Consensus 99 ~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~e 176 (482)
T PRK04195 99 RKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKE 176 (482)
T ss_pred CeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHc
Confidence 68999999987532 233322222 2234466666442 2211 1 2344689999999999998888776432
Q ss_pred CCCcchHHHHHHHHHHhcCCcHHHHHHHHHH
Q 039180 279 VENRELKSTATSVAKACRGLPIALTIVVKAL 309 (790)
Q Consensus 279 ~~~~~~~~~~~~i~~~~~glPlai~~~~~~l 309 (790)
... -..+....|++.++|-...+......+
T Consensus 177 gi~-i~~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 177 GIE-CDDEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred CCC-CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 222 124678889999999766554433333
No 97
>PRK05642 DNA replication initiation factor; Validated
Probab=97.87 E-value=0.00011 Score=73.33 Aligned_cols=151 Identities=15% Similarity=0.203 Sum_probs=92.4
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCCc
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEKK 208 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 208 (790)
..+.|+|..|+|||.|++.+++....+ -..++|++..+ +... ...+.+.+.+ -.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~------~~~~-----------------~~~~~~~~~~-~d 99 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLAE------LLDR-----------------GPELLDNLEQ-YE 99 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHHH------HHhh-----------------hHHHHHhhhh-CC
Confidence 568999999999999999998876433 23467776542 1110 1123344443 22
Q ss_pred EEEEEeCCCCc---cCccc-cCccCCC-CCCCcEEEEEeCChh---------HHhhhCCCceEEccCCCHHHHHHHHHHH
Q 039180 209 ILLILDNTWKS---LDLGT-IGIPFGV-EHRGCKLLFTTRDLD---------VLIRMGSEKNFSIGILNEQEAWRLFKII 274 (790)
Q Consensus 209 ~LlVlDdv~~~---~~~~~-l~~~~~~-~~~gs~iliTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 274 (790)
++|+||+... ..|.. +...+.. ...|.++|+|++... ....+....++++++++.++-.++++++
T Consensus 100 -~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 100 -LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred -EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 6789999643 23432 3333322 234667899887532 1112334468999999999999999866
Q ss_pred hCCCCCCcchHHHHHHHHHHhcCCcHHHHHHHH
Q 039180 275 AGAYVENRELKSTATSVAKACRGLPIALTIVVK 307 (790)
Q Consensus 275 ~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~ 307 (790)
+.... -.--+++.+-|++.+.|..-.+..+-.
T Consensus 179 a~~~~-~~l~~ev~~~L~~~~~~d~r~l~~~l~ 210 (234)
T PRK05642 179 ASRRG-LHLTDEVGHFILTRGTRSMSALFDLLE 210 (234)
T ss_pred HHHcC-CCCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 64321 112256777888888876655444443
No 98
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.86 E-value=0.00023 Score=75.35 Aligned_cols=157 Identities=11% Similarity=0.080 Sum_probs=87.9
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHH--Hc
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERL--KN 205 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l--~~ 205 (790)
.+.+.++|..|+||||+|+.+++.......-...+-++.+.......+. +.+..+ .... ..
T Consensus 38 ~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~-~~i~~~----------------~~~~~~~~ 100 (319)
T PRK00440 38 MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIR-NKIKEF----------------ARTAPVGG 100 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHH-HHHHHH----------------HhcCCCCC
Confidence 3457999999999999999999886433211111222222222221111 111111 1111 01
Q ss_pred CCcEEEEEeCCCCcc--CccccCccCCCCCCCcEEEEEeCCh-hHHhh-hCCCceEEccCCCHHHHHHHHHHHhCCCCCC
Q 039180 206 EKKILLILDNTWKSL--DLGTIGIPFGVEHRGCKLLFTTRDL-DVLIR-MGSEKNFSIGILNEQEAWRLFKIIAGAYVEN 281 (790)
Q Consensus 206 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 281 (790)
..+-++++|+++... ....+...+......+++|+++... .+... ......+++.+++.++....+...+......
T Consensus 101 ~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~ 180 (319)
T PRK00440 101 APFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIE 180 (319)
T ss_pred CCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCC
Confidence 235689999986542 2233333333334456777776532 22221 2234578999999999999888877532221
Q ss_pred cchHHHHHHHHHHhcCCcHHH
Q 039180 282 RELKSTATSVAKACRGLPIAL 302 (790)
Q Consensus 282 ~~~~~~~~~i~~~~~glPlai 302 (790)
-.++....+++.++|.+.-+
T Consensus 181 -i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 181 -ITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred -CCHHHHHHHHHHcCCCHHHH
Confidence 22457888999999987653
No 99
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.85 E-value=4.1e-06 Score=95.53 Aligned_cols=106 Identities=27% Similarity=0.300 Sum_probs=54.8
Q ss_pred cccceeeccCcc-ccccchhhhh-ccCcccEEeccCCCCc--ccchhhhcccccceecCCccccccccCchhhccccccc
Q 039180 524 VNLQTLCLDQSI-LRDIDIAIIG-KLKNLKILSFVRSDIV--QLPKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLE 599 (790)
Q Consensus 524 ~~L~~L~L~~~~-l~~l~p~~i~-~l~~L~~L~L~~~~l~--~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~ 599 (790)
.+|++|++++.. +..-.|..++ .||.|++|.+++-.+. .+.....++++|..||++++ +++.+ .+++++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl--~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL--SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc--HHHhccccHH
Confidence 355666665544 2222244444 3466666666654332 33333455666666666664 45544 2356666666
Q ss_pred eEecccCCccchhhcccccccccccccccCCCCCcEEEEEecC
Q 039180 600 ELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKN 642 (790)
Q Consensus 600 ~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 642 (790)
.|.+.+-.+. ....+..+.+|++|+.||++...
T Consensus 199 ~L~mrnLe~e----------~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 199 VLSMRNLEFE----------SYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HHhccCCCCC----------chhhHHHHhcccCCCeeeccccc
Confidence 6665554442 12234455556666666666543
No 100
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.85 E-value=5.1e-05 Score=69.82 Aligned_cols=104 Identities=15% Similarity=0.135 Sum_probs=58.5
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
.+.+.|+|.+|+|||++++.+++..... -..++++...+..........+... ............+
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~ 84 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHF------------LVRLLFELAEKAK 84 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHHhhhh------------hHhHHHHhhccCC
Confidence 4678999999999999999999987522 2346677665544332222111110 0001111111246
Q ss_pred cEEEEEeCCCCc-----cCccccCccCCC---CCCCcEEEEEeCCh
Q 039180 208 KILLILDNTWKS-----LDLGTIGIPFGV---EHRGCKLLFTTRDL 245 (790)
Q Consensus 208 r~LlVlDdv~~~-----~~~~~l~~~~~~---~~~gs~iliTtR~~ 245 (790)
+.++|+||++.. ..+......... ...+.+||+||...
T Consensus 85 ~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 85 PGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred CeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 789999999854 111111111111 13577888888864
No 101
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.81 E-value=1.8e-05 Score=55.13 Aligned_cols=39 Identities=33% Similarity=0.463 Sum_probs=34.6
Q ss_pred CceEEEEecCccccCCChhhhhccccceeeccCcccccc
Q 039180 501 KKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDI 539 (790)
Q Consensus 501 ~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l 539 (790)
++|++|++++|+++.+|..+++|++|++|++++|.++.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 579999999999999998899999999999999998875
No 102
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.80 E-value=0.00043 Score=74.28 Aligned_cols=150 Identities=17% Similarity=0.204 Sum_probs=84.8
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
.+-+.++|++|+|||++|+.+++.... .| +.+.. .. +....- ......+..+++......
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~~--~~-----~~v~~----~~----l~~~~~-----g~~~~~i~~~f~~a~~~~ 215 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETNA--TF-----IRVVG----SE----LVRKYI-----GEGARLVREIFELAKEKA 215 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCC--CE-----Eecch----HH----HHHHhh-----hHHHHHHHHHHHHHHhcC
Confidence 455899999999999999999987642 23 22211 11 111100 011122334444444446
Q ss_pred cEEEEEeCCCCccC----------------ccccCccCC--CCCCCcEEEEEeCChhHHhh-h----CCCceEEccCCCH
Q 039180 208 KILLILDNTWKSLD----------------LGTIGIPFG--VEHRGCKLLFTTRDLDVLIR-M----GSEKNFSIGILNE 264 (790)
Q Consensus 208 r~LlVlDdv~~~~~----------------~~~l~~~~~--~~~~gs~iliTtR~~~v~~~-~----~~~~~~~l~~L~~ 264 (790)
+.+|++||++.... +..+...+. ....+.+||.||...+.... + .....+.+...+.
T Consensus 216 p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~ 295 (364)
T TIGR01242 216 PSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDF 295 (364)
T ss_pred CcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCH
Confidence 78999999875410 111111111 11235678888875432221 1 2245789999999
Q ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCc
Q 039180 265 QEAWRLFKIIAGAYVENRELKSTATSVAKACRGLP 299 (790)
Q Consensus 265 ~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 299 (790)
++..++|..++.......+. ....+++.+.|..
T Consensus 296 ~~r~~Il~~~~~~~~l~~~~--~~~~la~~t~g~s 328 (364)
T TIGR01242 296 EGRLEILKIHTRKMKLAEDV--DLEAIAKMTEGAS 328 (364)
T ss_pred HHHHHHHHHHHhcCCCCccC--CHHHHHHHcCCCC
Confidence 99999999887543322211 1456777777754
No 103
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00037 Score=77.19 Aligned_cols=160 Identities=13% Similarity=0.124 Sum_probs=92.8
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhc-------------------cCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCch
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIED-------------------ELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSE 189 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~-------------------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 189 (790)
+.+.++|+.|+||||+|+.++....-. ..|.-++++.......+.++ +++.+
T Consensus 39 ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~~gvd~i-r~ii~-------- 109 (546)
T PRK14957 39 HAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEET-KEILD-------- 109 (546)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccccCHHHH-HHHHH--------
Confidence 567899999999999999999865321 01222333333222222211 11111
Q ss_pred hHHHHHHHHHHHHHHcCCcEEEEEeCCCCc--cCccccCccCCCCCCCcEEE-EEeCChhHHhh-hCCCceEEccCCCHH
Q 039180 190 EAEFRRASRMFERLKNEKKILLILDNTWKS--LDLGTIGIPFGVEHRGCKLL-FTTRDLDVLIR-MGSEKNFSIGILNEQ 265 (790)
Q Consensus 190 ~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~il-iTtR~~~v~~~-~~~~~~~~l~~L~~~ 265 (790)
.+...-..+++-++|+|++... ...+.+...+-.....+++| +||....+... ......+++.+++.+
T Consensus 110 --------~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~ 181 (546)
T PRK14957 110 --------NIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQA 181 (546)
T ss_pred --------HHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHH
Confidence 1111112356779999999755 23444444444334455555 45544444433 445679999999999
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcH-HHHHHH
Q 039180 266 EAWRLFKIIAGAYVENRELKSTATSVAKACRGLPI-ALTIVV 306 (790)
Q Consensus 266 ~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~~ 306 (790)
+..+.+.+.+..... ...++....|++.++|.+. |+..+-
T Consensus 182 eI~~~L~~il~~egi-~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 182 DIKDQLKIILAKENI-NSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 988888776543222 2234567789999999664 444443
No 104
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.78 E-value=0.00069 Score=68.08 Aligned_cols=176 Identities=19% Similarity=0.203 Sum_probs=105.5
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccC----CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHH-HHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDEL----YDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRR-ASRMFE 201 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~l~~ 201 (790)
..+-+.|+|.+|.|||++++++...+-.... --.|+.|.+....+...++..|+.+++.+......... ...+..
T Consensus 60 Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ 139 (302)
T PF05621_consen 60 RMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLR 139 (302)
T ss_pred CCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHH
Confidence 4677999999999999999999987643311 12478888999999999999999999988754332222 223333
Q ss_pred HHHcCCcEEEEEeCCCCcc---------CccccCccCCCCCCCcEEEEEeCChhHHhh-----hCCCceEEccCCC-HHH
Q 039180 202 RLKNEKKILLILDNTWKSL---------DLGTIGIPFGVEHRGCKLLFTTRDLDVLIR-----MGSEKNFSIGILN-EQE 266 (790)
Q Consensus 202 ~l~~~kr~LlVlDdv~~~~---------~~~~l~~~~~~~~~gs~iliTtR~~~v~~~-----~~~~~~~~l~~L~-~~~ 266 (790)
-+..-+--+||+|++-+.- ..+.++ .+...-.-+-|.|-|+.---+-. .+....+.+..-. .++
T Consensus 140 llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK-~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~e 218 (302)
T PF05621_consen 140 LLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALK-FLGNELQIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEE 218 (302)
T ss_pred HHHHcCCcEEEeechHHHhcccHHHHHHHHHHHH-HHhhccCCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcH
Confidence 4443234689999996641 122221 11111223346666654211111 1223456665544 344
Q ss_pred HHHHHHHHhC----CCCCCcchHHHHHHHHHHhcCCcHHHH
Q 039180 267 AWRLFKIIAG----AYVENRELKSTATSVAKACRGLPIALT 303 (790)
Q Consensus 267 ~~~Lf~~~~~----~~~~~~~~~~~~~~i~~~~~glPlai~ 303 (790)
..+|+..... .....-...+++..|...++|+.-.+.
T Consensus 219 f~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 219 FRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 5555544332 222233457889999999999864443
No 105
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.77 E-value=2.7e-05 Score=74.87 Aligned_cols=236 Identities=18% Similarity=0.095 Sum_probs=134.7
Q ss_pred ccCCceEEEEecCcccc-----CCChhhhhccccceeeccCcccc---ccch-------hhhhccCcccEEeccCCCCc-
Q 039180 498 KGVKKLRVVALVKMLLS-----SLPSSIYLLVNLQTLCLDQSILR---DIDI-------AIIGKLKNLKILSFVRSDIV- 561 (790)
Q Consensus 498 ~~l~~L~~L~L~~~~~~-----~lp~~~~~l~~L~~L~L~~~~l~---~l~p-------~~i~~l~~L~~L~L~~~~l~- 561 (790)
..+..+..++||+|.|. .+...+.+-.+|+..+++.-... ...| +.+-+|++|+..+||.|.+.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 35788999999999886 34556667788999888765421 1113 34568899999999999776
Q ss_pred ccchh----hhcccccceecCCccccccccCchhhc-------------cccccceEecccCCccchhhccccccccccc
Q 039180 562 QLPKA----LGELTKLRLSDLTDCFHLKVIAPNVIS-------------SLTRLEELYMGNCPIEWEVERANSERSNSSL 624 (790)
Q Consensus 562 ~lp~~----l~~l~~L~~L~l~~~~~l~~~~~~~l~-------------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 624 (790)
..|+. +.+-+.|.||.+++| .++.+..+-++ +-|.|++..+..|.+... ......
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRleng-------s~~~~a 178 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENG-------SKELSA 178 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccC-------cHHHHH
Confidence 45543 566788999999998 66554433333 346777777777765210 011112
Q ss_pred ccccCCCCCcEEEEEecCCCCC--C-----ccccccccceeEEEecCCCCCCC-----ccccCCccCeeeccceecceec
Q 039180 625 DELMNLPWLTTLEIDVKNDSIL--P-----ESFLTQKLERFKISIGNESFMPS-----QSVELPNLEALELCAINVDKIW 692 (790)
Q Consensus 625 ~~l~~l~~L~~L~l~~~~~~~~--~-----~~~~~~~L~~L~l~~~~~~~~~~-----~~~~l~~L~~L~l~~~~l~~l~ 692 (790)
..+....+|+.+.+..|.+..- . ....+++|+.|+|..|.++-..+ .....+.|+.|.+.+|-++.-.
T Consensus 179 ~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G 258 (388)
T COG5238 179 ALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEG 258 (388)
T ss_pred HHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcccc
Confidence 2344446777888877764321 1 11126777777777776653322 2334556777777777443211
Q ss_pred ccCCC-ccccccCCCccEEeeccCCcccccch----h-HHHhccccccEEeeccC
Q 039180 693 HYNLL-PFMLSRFQSLTRLIVRSCPKLKYIFS----A-SMIQNFELLRELSIADC 741 (790)
Q Consensus 693 ~~~~~-~~~~~~l~~L~~L~L~~~~~l~~~~~----~-~~~~~l~~L~~L~l~~c 741 (790)
..... .+.-..+|+|..|-..+|..-..+.. . ..-..+|-|..|.+.++
T Consensus 259 ~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN 313 (388)
T COG5238 259 VKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN 313 (388)
T ss_pred HHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC
Confidence 00000 00012356666666665543222110 0 11235566666666554
No 106
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.00025 Score=76.49 Aligned_cols=170 Identities=11% Similarity=0.078 Sum_probs=93.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhC-CCCchhHHHHHHHHHHHHH----
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLG-LELSEEAEFRRASRMFERL---- 203 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~~~l~~~l---- 203 (790)
+.+.++|+.|+||||+|+.++....-..... ...+..+..-..+...+...+. .+.......+.+..+.+.+
T Consensus 41 ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~---~~pCg~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p 117 (484)
T PRK14956 41 HAYIFFGPRGVGKTTIARILAKRLNCENPIG---NEPCNECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAP 117 (484)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCcccccC---ccccCCCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhh
Confidence 5688999999999999999998753221111 0111111111111111110000 0000000011222222222
Q ss_pred HcCCcEEEEEeCCCCc--cCccccCccCCCCCCCcEEE-EEeCChhHHhh-hCCCceEEccCCCHHHHHHHHHHHhCCCC
Q 039180 204 KNEKKILLILDNTWKS--LDLGTIGIPFGVEHRGCKLL-FTTRDLDVLIR-MGSEKNFSIGILNEQEAWRLFKIIAGAYV 279 (790)
Q Consensus 204 ~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~il-iTtR~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~ 279 (790)
..++.-++|+|++... ..++++...+-.......+| .||....+... ....+.+.+.+++.++..+.+.+.+....
T Consensus 118 ~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Eg 197 (484)
T PRK14956 118 MGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIEN 197 (484)
T ss_pred hcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcC
Confidence 2356679999999765 34555544443323344444 45544555433 44557899999999999988888764322
Q ss_pred CCcchHHHHHHHHHHhcCCcHHH
Q 039180 280 ENRELKSTATSVAKACRGLPIAL 302 (790)
Q Consensus 280 ~~~~~~~~~~~i~~~~~glPlai 302 (790)
. .-.++....|++.++|.+.-.
T Consensus 198 i-~~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 198 V-QYDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred C-CCCHHHHHHHHHHcCChHHHH
Confidence 2 223556788999999988543
No 107
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.75 E-value=0.00047 Score=73.76 Aligned_cols=150 Identities=12% Similarity=0.053 Sum_probs=88.2
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhc-------------------cCCCEEEEEEeC-CCCCHHHHHHHHHHHhCCCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIED-------------------ELYDMVVFSEVT-QSPDIKQIQQEIAEKLGLEL 187 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~-------------------~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~ 187 (790)
.+-+.++|+.|+|||++|+.++...--. .|.| +.++... ....+.+
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD-~~~i~~~~~~i~i~~------------- 101 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPD-VRVVAPEGLSIGVDE------------- 101 (394)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEeccccccCCHHH-------------
Confidence 4668899999999999999998764221 1222 1222111 1112221
Q ss_pred chhHHHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--CccccCccCCCCCCCcEEEEEeCC-hhHHhh-hCCCceEEc
Q 039180 188 SEEAEFRRASRMFERLK----NEKKILLILDNTWKSL--DLGTIGIPFGVEHRGCKLLFTTRD-LDVLIR-MGSEKNFSI 259 (790)
Q Consensus 188 ~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR~-~~v~~~-~~~~~~~~l 259 (790)
+..+.+... .+++-++|+|+++... ..+.+...+-....+..+|++|.+ ..+... ......+.+
T Consensus 102 --------iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f 173 (394)
T PRK07940 102 --------VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVAL 173 (394)
T ss_pred --------HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEEC
Confidence 222222221 2456688889997662 223333333333445656665555 444434 445679999
Q ss_pred cCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHHHHHH
Q 039180 260 GILNEQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIALTIV 305 (790)
Q Consensus 260 ~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 305 (790)
.+++.++..+.+.+..+ . ..+.+..+++.++|.|.....+
T Consensus 174 ~~~~~~~i~~~L~~~~~---~---~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 174 RTPSVEAVAEVLVRRDG---V---DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCCHHHHHHHHHHhcC---C---CHHHHHHHHHHcCCCHHHHHHH
Confidence 99999999988875432 1 1345778899999998654333
No 108
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.00049 Score=75.10 Aligned_cols=155 Identities=14% Similarity=0.114 Sum_probs=93.9
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhh--------------------ccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCc
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIE--------------------DELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELS 188 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~--------------------~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 188 (790)
+-+.++|+.|+||||+|+.++...-- ..|.| ++.++.+....+.++. +|.+.....
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~D-v~eidaas~~~vddIR-~Iie~~~~~-- 111 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPD-VIEIDAASNTSVDDIK-VILENSCYL-- 111 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCC-EEEEecccCCCHHHHH-HHHHHHHhc--
Confidence 57889999999999999998875311 11222 4455554433433322 222221100
Q ss_pred hhHHHHHHHHHHHHHHcCCcEEEEEeCCCCcc--CccccCccCCCCCCCcEEEEEeCC-hhHHhh-hCCCceEEccCCCH
Q 039180 189 EEAEFRRASRMFERLKNEKKILLILDNTWKSL--DLGTIGIPFGVEHRGCKLLFTTRD-LDVLIR-MGSEKNFSIGILNE 264 (790)
Q Consensus 189 ~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR~-~~v~~~-~~~~~~~~l~~L~~ 264 (790)
-..+++-++|+|++.... ..+.+...+-...+.+++|++|.+ ..+... ......+.+.+++.
T Consensus 112 --------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~ 177 (491)
T PRK14964 112 --------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPT 177 (491)
T ss_pred --------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccH
Confidence 002466789999986552 344444444444456666665543 444443 44567899999999
Q ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHHH
Q 039180 265 QEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIAL 302 (790)
Q Consensus 265 ~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 302 (790)
++..+.+.+.+...... -.++..+.|++.++|.+..+
T Consensus 178 ~el~~~L~~ia~~Egi~-i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 178 DKLVEHLVDIAKKENIE-HDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred HHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 99999988877533222 22456778999999877543
No 109
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.00052 Score=77.14 Aligned_cols=98 Identities=10% Similarity=0.067 Sum_probs=63.4
Q ss_pred CCcEEEEEeCCCCc--cCccccCccCCCCCCCcEEEEEe-CChhHHhh-hCCCceEEccCCCHHHHHHHHHHHhCCCCCC
Q 039180 206 EKKILLILDNTWKS--LDLGTIGIPFGVEHRGCKLLFTT-RDLDVLIR-MGSEKNFSIGILNEQEAWRLFKIIAGAYVEN 281 (790)
Q Consensus 206 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTt-R~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 281 (790)
++.-++|+|++... ...+.+...+-......++|++| ....+... ......+++.+++.++..+.+.+.+......
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ 202 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP 202 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 45678999999766 33444444443334455665554 44444433 4556799999999999999888876532222
Q ss_pred cchHHHHHHHHHHhcCCcHHHHH
Q 039180 282 RELKSTATSVAKACRGLPIALTI 304 (790)
Q Consensus 282 ~~~~~~~~~i~~~~~glPlai~~ 304 (790)
...+....|++.++|.+..+..
T Consensus 203 -ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 203 -AEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred -CCHHHHHHHHHHcCCCHHHHHH
Confidence 1245678889999997754443
No 110
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.72 E-value=0.00025 Score=70.70 Aligned_cols=150 Identities=14% Similarity=0.110 Sum_probs=88.1
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
.+.+.|+|..|+|||+||+.+++..... .. .+++++...... . + ... . .
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~-~~-~~~~i~~~~~~~------~----~-----------------~~~-~-~ 90 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYG-GR-NARYLDAASPLL------A----F-----------------DFD-P-E 90 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC-CC-cEEEEehHHhHH------H----H-----------------hhc-c-c
Confidence 4578899999999999999999876432 12 345555433110 0 0 011 1 2
Q ss_pred cEEEEEeCCCCccCcc--ccCccCCC-CCCCc-EEEEEeCChhHHh--------hhCCCceEEccCCCHHHHHHHHHHHh
Q 039180 208 KILLILDNTWKSLDLG--TIGIPFGV-EHRGC-KLLFTTRDLDVLI--------RMGSEKNFSIGILNEQEAWRLFKIIA 275 (790)
Q Consensus 208 r~LlVlDdv~~~~~~~--~l~~~~~~-~~~gs-~iliTtR~~~v~~--------~~~~~~~~~l~~L~~~~~~~Lf~~~~ 275 (790)
.-+||+||+.....+. .+...+.. ...+. .+|+|++...... .+.....+++.++++++-..++.+.+
T Consensus 91 ~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 91 AELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred CCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 3478899997543221 22222211 12233 4666666432211 22234689999999988777776654
Q ss_pred CCCCCCcchHHHHHHHHHHhcCCcHHHHHHHHHH
Q 039180 276 GAYVENRELKSTATSVAKACRGLPIALTIVVKAL 309 (790)
Q Consensus 276 ~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l 309 (790)
.... ..--++..+.+++...|.+..+..+-..+
T Consensus 171 ~~~~-v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 171 AERG-LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHcC-CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 3211 22234677888888999988877666554
No 111
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.72 E-value=0.0009 Score=71.92 Aligned_cols=159 Identities=13% Similarity=0.130 Sum_probs=92.6
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhc--------------------cCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCc
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIED--------------------ELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELS 188 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~--------------------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 188 (790)
+.+.++|+.|+||||+|+.++...... .+++. ++++......... .+++...+....
T Consensus 37 ~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~~~~~~~~~~~-~~~l~~~~~~~p- 113 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEIDAASNNGVDD-IREILDNVKYAP- 113 (355)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEeeccccCCHHH-HHHHHHHHhcCc-
Confidence 678899999999999999998875321 12332 3333222112111 122222211100
Q ss_pred hhHHHHHHHHHHHHHHcCCcEEEEEeCCCCc--cCccccCccCCCCCCCcEEEEEeCChh-HHhh-hCCCceEEccCCCH
Q 039180 189 EEAEFRRASRMFERLKNEKKILLILDNTWKS--LDLGTIGIPFGVEHRGCKLLFTTRDLD-VLIR-MGSEKNFSIGILNE 264 (790)
Q Consensus 189 ~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtR~~~-v~~~-~~~~~~~~l~~L~~ 264 (790)
..+++-++|+|+++.. ...+.+...+......+.+|++|.+.. +... ......++..+++.
T Consensus 114 ---------------~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~ 178 (355)
T TIGR02397 114 ---------------SSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPL 178 (355)
T ss_pred ---------------ccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCH
Confidence 1235568999998655 234444444433344566667765543 2322 33446888999999
Q ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHHHHHHH
Q 039180 265 QEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIALTIVV 306 (790)
Q Consensus 265 ~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~ 306 (790)
++..+.+...+..... .-.++.+..+++.++|.|..+....
T Consensus 179 ~~l~~~l~~~~~~~g~-~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 179 EDIVERLKKILDKEGI-KIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred HHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCChHHHHHHH
Confidence 9999988887643221 1124677889999999886554433
No 112
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.71 E-value=3.2e-06 Score=72.63 Aligned_cols=91 Identities=16% Similarity=0.205 Sum_probs=59.6
Q ss_pred ccCCceEEEEecCccccCCChhhhhc-cccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhhhccccccee
Q 039180 498 KGVKKLRVVALVKMLLSSLPSSIYLL-VNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLS 576 (790)
Q Consensus 498 ~~l~~L~~L~L~~~~~~~lp~~~~~l-~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L 576 (790)
....+|...+|++|.+.++|..|... +-++.|++++|.+.++ |..+..++.|+.|+++.|.+...|..+..|.+|-.|
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdv-PeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDV-PEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhc-hHHHhhhHHhhhcccccCccccchHHHHHHHhHHHh
Confidence 34456666677777777666666533 3667777777777766 666777777777777777777667766667777777
Q ss_pred cCCccccccccCch
Q 039180 577 DLTDCFHLKVIAPN 590 (790)
Q Consensus 577 ~l~~~~~l~~~~~~ 590 (790)
+..+| ....+|..
T Consensus 129 ds~~n-a~~eid~d 141 (177)
T KOG4579|consen 129 DSPEN-ARAEIDVD 141 (177)
T ss_pred cCCCC-ccccCcHH
Confidence 76665 44444433
No 113
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.69 E-value=0.00027 Score=81.33 Aligned_cols=148 Identities=18% Similarity=0.221 Sum_probs=83.4
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH-c
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLK-N 205 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~-~ 205 (790)
...-+.++|++|+||||+|+.+++... .+|. .++... ....++ .+.+....+.+. .
T Consensus 51 ~~~slLL~GPpGtGKTTLA~aIA~~~~--~~f~---~lna~~-~~i~di-----------------r~~i~~a~~~l~~~ 107 (725)
T PRK13341 51 RVGSLILYGPPGVGKTTLARIIANHTR--AHFS---SLNAVL-AGVKDL-----------------RAEVDRAKERLERH 107 (725)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhc--Ccce---eehhhh-hhhHHH-----------------HHHHHHHHHHhhhc
Confidence 345678999999999999999998753 2231 111110 001100 011111111121 1
Q ss_pred CCcEEEEEeCCCCc--cCccccCccCCCCCCCcEEEEE--eCCh--hHHhh-hCCCceEEccCCCHHHHHHHHHHHhCC-
Q 039180 206 EKKILLILDNTWKS--LDLGTIGIPFGVEHRGCKLLFT--TRDL--DVLIR-MGSEKNFSIGILNEQEAWRLFKIIAGA- 277 (790)
Q Consensus 206 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliT--tR~~--~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~- 277 (790)
+++.+||+||++.. ...+.+...+ ..|+.++|+ |.+. .+... ......+.+++++.++...++.+.+..
T Consensus 108 ~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~ 184 (725)
T PRK13341 108 GKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDK 184 (725)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHH
Confidence 35689999999654 3344443222 335555553 3332 12222 233568999999999999999876641
Q ss_pred -----CCCCcchHHHHHHHHHHhcCCcH
Q 039180 278 -----YVENRELKSTATSVAKACRGLPI 300 (790)
Q Consensus 278 -----~~~~~~~~~~~~~i~~~~~glPl 300 (790)
.....-.++..+.|++.+.|...
T Consensus 185 ~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 185 ERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred HhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 11122235667888898888643
No 114
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.69 E-value=0.00053 Score=74.80 Aligned_cols=159 Identities=16% Similarity=0.172 Sum_probs=94.8
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
...+.|+|..|+|||.|++++++.......-..++++++. ++...+...+... ......+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~------~~~~~~~~~~~~~--------~~~~~~~~~~~-- 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE------KFTNDFVNALRNN--------KMEEFKEKYRS-- 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH------HHHHHHHHHHHcC--------CHHHHHHHHHh--
Confidence 4568999999999999999999987644222345666543 3334444444321 12233344432
Q ss_pred cEEEEEeCCCCccCc----cccCccCCC-CCCCcEEEEEeCCh--h-------HHhhhCCCceEEccCCCHHHHHHHHHH
Q 039180 208 KILLILDNTWKSLDL----GTIGIPFGV-EHRGCKLLFTTRDL--D-------VLIRMGSEKNFSIGILNEQEAWRLFKI 273 (790)
Q Consensus 208 r~LlVlDdv~~~~~~----~~l~~~~~~-~~~gs~iliTtR~~--~-------v~~~~~~~~~~~l~~L~~~~~~~Lf~~ 273 (790)
.-+|||||+...... +.+...+.. ...+..+|+|+... . +...+.....+.+++.+.++-.+++++
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHH
Confidence 248889999754221 112222211 12345688887642 1 111233345789999999999999998
Q ss_pred HhCCCCCCcchHHHHHHHHHHhcCCcHHHH
Q 039180 274 IAGAYVENRELKSTATSVAKACRGLPIALT 303 (790)
Q Consensus 274 ~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 303 (790)
.+..... .--+++..-|++.+.|..-.+.
T Consensus 280 ~~~~~~~-~l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 280 KAEEEGL-ELPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHcCC-CCCHHHHHHHHHhcCCCHHHHH
Confidence 8763221 2235677888888888765433
No 115
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.66 E-value=0.00049 Score=76.36 Aligned_cols=157 Identities=10% Similarity=0.110 Sum_probs=91.5
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhcc-------------------CCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCch
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDE-------------------LYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSE 189 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~-------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 189 (790)
+.+.++|+.|+||||+|+.++...--.. .|.-++.++......+.++ +++.+.+..
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~i-R~l~~~~~~---- 113 (509)
T PRK14958 39 HAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDT-RELLDNIPY---- 113 (509)
T ss_pred eeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHHHH-HHHHHHHhh----
Confidence 5678999999999999999998753221 1112333433333333332 222222211
Q ss_pred hHHHHHHHHHHHHHHcCCcEEEEEeCCCCc--cCccccCccCCCCCCCcEEEEEeC-ChhHHhh-hCCCceEEccCCCHH
Q 039180 190 EAEFRRASRMFERLKNEKKILLILDNTWKS--LDLGTIGIPFGVEHRGCKLLFTTR-DLDVLIR-MGSEKNFSIGILNEQ 265 (790)
Q Consensus 190 ~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtR-~~~v~~~-~~~~~~~~l~~L~~~ 265 (790)
.-..++.-++|+|++... ...+.+...+-.....+++|++|. ...+... ......+++.+++.+
T Consensus 114 ------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~ 181 (509)
T PRK14958 114 ------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPL 181 (509)
T ss_pred ------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHH
Confidence 111356678999999765 334444444433344566665554 3444333 344568899999999
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHHHH
Q 039180 266 EAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIALT 303 (790)
Q Consensus 266 ~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 303 (790)
+..+.+.+.+....... ..+....|++.++|.+..+.
T Consensus 182 ~i~~~l~~il~~egi~~-~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 182 QIAAHCQHLLKEENVEF-ENAALDLLARAANGSVRDAL 218 (509)
T ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHHH
Confidence 98887776664322221 23456778899999875443
No 116
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.65 E-value=0.00042 Score=78.02 Aligned_cols=169 Identities=12% Similarity=0.106 Sum_probs=91.4
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhC-----CCCchhHHHHHHHHHHHHH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLG-----LELSEEAEFRRASRMFERL 203 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-----~~~~~~~~~~~~~~l~~~l 203 (790)
+.+.++|..|+||||+|+.++...--...+. ......-...+.|...-. .+.......+.+..+.+.+
T Consensus 39 hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~ 111 (647)
T PRK07994 39 HAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNV 111 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHHcCCCCCceeecccccCCHHHHHHHHHHH
Confidence 5678999999999999999987753221100 000000011111111000 0000000011112222221
Q ss_pred ----HcCCcEEEEEeCCCCc--cCccccCccCCCCCCCcEEEE-EeCChhHHhh-hCCCceEEccCCCHHHHHHHHHHHh
Q 039180 204 ----KNEKKILLILDNTWKS--LDLGTIGIPFGVEHRGCKLLF-TTRDLDVLIR-MGSEKNFSIGILNEQEAWRLFKIIA 275 (790)
Q Consensus 204 ----~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ili-TtR~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~ 275 (790)
..+++-++|+|++... ...+.+...+-......++|+ ||....+... ......+.+.+++.++....+.+..
T Consensus 112 ~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il 191 (647)
T PRK07994 112 QYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHIL 191 (647)
T ss_pred HhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHH
Confidence 2467789999999765 234444333333334555554 4444544433 4456799999999999999988766
Q ss_pred CCCCCCcchHHHHHHHHHHhcCCcHHHHHH
Q 039180 276 GAYVENRELKSTATSVAKACRGLPIALTIV 305 (790)
Q Consensus 276 ~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 305 (790)
..... ...++....|++.++|.+..+..+
T Consensus 192 ~~e~i-~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 192 QAEQI-PFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred HHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 42222 222456778999999988644443
No 117
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.65 E-value=0.00041 Score=77.80 Aligned_cols=154 Identities=14% Similarity=0.136 Sum_probs=89.2
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccC-------------------CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCch
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDEL-------------------YDMVVFSEVTQSPDIKQIQQEIAEKLGLELSE 189 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~-------------------f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 189 (790)
+.+.++|..|+||||+|+.++....-... |.-++.++......+.
T Consensus 39 Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~gVd---------------- 102 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGID---------------- 102 (709)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccccCCHH----------------
Confidence 67899999999999999999876432111 1111223222222211
Q ss_pred hHHHHHHHHHHHHH----HcCCcEEEEEeCCCCccC--ccccCccCCCCCCCcEEEEEeCC-hhHHhh-hCCCceEEccC
Q 039180 190 EAEFRRASRMFERL----KNEKKILLILDNTWKSLD--LGTIGIPFGVEHRGCKLLFTTRD-LDVLIR-MGSEKNFSIGI 261 (790)
Q Consensus 190 ~~~~~~~~~l~~~l----~~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~gs~iliTtR~-~~v~~~-~~~~~~~~l~~ 261 (790)
.+..+++.. ..+++-++|+|++..... ...+...+-.....+++|++|.+ ..+... .+....+.+.+
T Consensus 103 -----~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~ 177 (709)
T PRK08691 103 -----NIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRN 177 (709)
T ss_pred -----HHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCC
Confidence 122222211 124667999999976532 33333333333345666766654 333322 34446788889
Q ss_pred CCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHHHHH
Q 039180 262 LNEQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIALTI 304 (790)
Q Consensus 262 L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 304 (790)
++.++..+.+.+.+...... -..+....|++.++|.+.-+..
T Consensus 178 Ls~eeI~~~L~~Il~kEgi~-id~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 178 MTAQQVADHLAHVLDSEKIA-YEPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred CCHHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHhCCCHHHHHH
Confidence 99999999888777532221 2245678899999998754433
No 118
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.64 E-value=1.8e-05 Score=90.40 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=16.1
Q ss_pred CceEEEEecCccccCCChhhhhccccceeeccCc
Q 039180 501 KKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQS 534 (790)
Q Consensus 501 ~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~ 534 (790)
-++...++.+.....-+-.+-.-..|+.|.|.+.
T Consensus 60 f~ltki~l~~~~~~~~~~~~l~~~~L~sl~LGnl 93 (699)
T KOG3665|consen 60 FNLTKIDLKNVTLQHQTLEMLRKQDLESLKLGNL 93 (699)
T ss_pred heeEEeeccceecchhHHHHHhhccccccCCcch
Confidence 3566666665544432222222233666665543
No 119
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.62 E-value=0.00069 Score=71.40 Aligned_cols=172 Identities=12% Similarity=0.082 Sum_probs=94.5
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccC--CCEEEEEEeCCCCCHHHHHHHHHHHhC-------CCCc-------hhH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDEL--YDMVVFSEVTQSPDIKQIQQEIAEKLG-------LELS-------EEA 191 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~i~~~l~-------~~~~-------~~~ 191 (790)
.+.+.|+|+.|+||||+|..++...-.... +... ........-...+.+...-. .+.. ..-
T Consensus 45 ~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I 121 (351)
T PRK09112 45 HHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAI 121 (351)
T ss_pred CeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHcCCCCCEEEeecccccccccccccC
Confidence 357899999999999999999987643110 1111 00111111112333322210 0000 000
Q ss_pred HHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--CccccCccCCCCCCCcE-EEEEeCChhHHhh-hCCCceEEccCCC
Q 039180 192 EFRRASRMFERLK----NEKKILLILDNTWKSL--DLGTIGIPFGVEHRGCK-LLFTTRDLDVLIR-MGSEKNFSIGILN 263 (790)
Q Consensus 192 ~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~-iliTtR~~~v~~~-~~~~~~~~l~~L~ 263 (790)
..+.+..+.+.+. .+++-++|+|+++... ..+.+...+-....... |++|++...+... ......+.+.+++
T Consensus 122 ~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~ 201 (351)
T PRK09112 122 TVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLD 201 (351)
T ss_pred CHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCC
Confidence 1122334444443 3567799999997663 23333333322223344 5555554444333 3345799999999
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHHHHHH
Q 039180 264 EQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIALTIV 305 (790)
Q Consensus 264 ~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 305 (790)
.++..+++.+...... ..++....+++.++|.|.....+
T Consensus 202 ~~~~~~~L~~~~~~~~---~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 202 DDELKKALSHLGSSQG---SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred HHHHHHHHHHhhcccC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999987432211 22455778999999999855443
No 120
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.62 E-value=0.00071 Score=68.91 Aligned_cols=134 Identities=10% Similarity=0.084 Sum_probs=69.0
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcC
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNE 206 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 206 (790)
...-+.++|++|+||||+|+.++.............++.++.. + +....- .. .......+++...
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~----~----l~~~~~----g~-~~~~~~~~~~~a~-- 105 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA----D----LVGEYI----GH-TAQKTREVIKKAL-- 105 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH----H----hhhhhc----cc-hHHHHHHHHHhcc--
Confidence 4566889999999999999999887532211111122333221 1 111110 00 0112223333322
Q ss_pred CcEEEEEeCCCCcc----------CccccCccCCCCCCCcEEEEEeCChhHHh------h-hCC-CceEEccCCCHHHHH
Q 039180 207 KKILLILDNTWKSL----------DLGTIGIPFGVEHRGCKLLFTTRDLDVLI------R-MGS-EKNFSIGILNEQEAW 268 (790)
Q Consensus 207 kr~LlVlDdv~~~~----------~~~~l~~~~~~~~~gs~iliTtR~~~v~~------~-~~~-~~~~~l~~L~~~~~~ 268 (790)
.-+|++|++.... ..+.+...+........+++++...+... . ... ...+.+++++.++..
T Consensus 106 -~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~ 184 (261)
T TIGR02881 106 -GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELM 184 (261)
T ss_pred -CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHH
Confidence 2488999997532 11222222222222334555554432211 1 111 246889999999999
Q ss_pred HHHHHHhC
Q 039180 269 RLFKIIAG 276 (790)
Q Consensus 269 ~Lf~~~~~ 276 (790)
+++++.+.
T Consensus 185 ~Il~~~~~ 192 (261)
T TIGR02881 185 EIAERMVK 192 (261)
T ss_pred HHHHHHHH
Confidence 99987764
No 121
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.60 E-value=0.00068 Score=69.63 Aligned_cols=131 Identities=11% Similarity=0.067 Sum_probs=72.0
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCCcE
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEKKI 209 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~ 209 (790)
-+.++|++|+||||+|+.++............-++.++. . ++...+.... . .....+++.. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~----~l~~~~~g~~--~---~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----D----DLVGQYIGHT--A---PKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----H----HHhHhhcccc--h---HHHHHHHHHc---cCc
Confidence 588999999999999998887764332222122444432 1 1222221111 1 1222333333 235
Q ss_pred EEEEeCCCCc-----------cCccccCccCCCCCCCcEEEEEeCChhHHhhh--C------CCceEEccCCCHHHHHHH
Q 039180 210 LLILDNTWKS-----------LDLGTIGIPFGVEHRGCKLLFTTRDLDVLIRM--G------SEKNFSIGILNEQEAWRL 270 (790)
Q Consensus 210 LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~iliTtR~~~v~~~~--~------~~~~~~l~~L~~~~~~~L 270 (790)
+|+||++... +..+.+...+.....+.+||+++......... . ....+++++++.+|..++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8889998632 11222323333334455677776543222111 1 135799999999999999
Q ss_pred HHHHhC
Q 039180 271 FKIIAG 276 (790)
Q Consensus 271 f~~~~~ 276 (790)
+...+.
T Consensus 204 ~~~~l~ 209 (284)
T TIGR02880 204 AGLMLK 209 (284)
T ss_pred HHHHHH
Confidence 888764
No 122
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.60 E-value=2.7e-05 Score=67.09 Aligned_cols=82 Identities=18% Similarity=0.271 Sum_probs=46.6
Q ss_pred ccCCCCCCCCCChhhhccCCceEEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCc
Q 039180 482 IPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIV 561 (790)
Q Consensus 482 ~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~ 561 (790)
+++|.+. .+|..+-..++.++.|+|++|.+..+|..+..++.|+.|+++.|.+... |..|..|.+|-.|+..+|.+.
T Consensus 60 ls~N~fk--~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~-p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 60 LSDNGFK--KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAE-PRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred cccchhh--hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccc-hHHHHHHHhHHHhcCCCCccc
Confidence 3444444 4555555555556666666666666665566666666666666665555 555555556666666555555
Q ss_pred ccchh
Q 039180 562 QLPKA 566 (790)
Q Consensus 562 ~lp~~ 566 (790)
.+|..
T Consensus 137 eid~d 141 (177)
T KOG4579|consen 137 EIDVD 141 (177)
T ss_pred cCcHH
Confidence 55543
No 123
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.59 E-value=0.00092 Score=73.15 Aligned_cols=158 Identities=13% Similarity=0.164 Sum_probs=93.9
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
..-+.|+|..|+|||.|++.+++.......-..++|++.. ++..++...+... ......+.+.. +
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~------~f~~~~~~~~~~~--------~~~~f~~~~~~-~ 194 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE------KFLNDLVDSMKEG--------KLNEFREKYRK-K 194 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHhcc--------cHHHHHHHHHh-c
Confidence 4459999999999999999999987543222356777653 3455555544321 11223333332 3
Q ss_pred cEEEEEeCCCCccC---c-cccCccCCC-CCCCcEEEEEeC-Chh----H----HhhhCCCceEEccCCCHHHHHHHHHH
Q 039180 208 KILLILDNTWKSLD---L-GTIGIPFGV-EHRGCKLLFTTR-DLD----V----LIRMGSEKNFSIGILNEQEAWRLFKI 273 (790)
Q Consensus 208 r~LlVlDdv~~~~~---~-~~l~~~~~~-~~~gs~iliTtR-~~~----v----~~~~~~~~~~~l~~L~~~~~~~Lf~~ 273 (790)
.-+|++||+..... + +.+...+.. ...|..||+||. ... + ...+.....+.+++.+.+.-.+++++
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~ 274 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARK 274 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHH
Confidence 45899999975421 1 122222211 123456888885 321 1 11133445889999999999999988
Q ss_pred HhCCCCCCcchHHHHHHHHHHhcCCcHH
Q 039180 274 IAGAYVENRELKSTATSVAKACRGLPIA 301 (790)
Q Consensus 274 ~~~~~~~~~~~~~~~~~i~~~~~glPla 301 (790)
.+..... .--+++..-|++.+.|.--.
T Consensus 275 ~~~~~~~-~l~~ev~~~Ia~~~~~~~R~ 301 (440)
T PRK14088 275 MLEIEHG-ELPEEVLNFVAENVDDNLRR 301 (440)
T ss_pred HHHhcCC-CCCHHHHHHHHhccccCHHH
Confidence 8753211 12256778888888775433
No 124
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.59 E-value=0.00099 Score=73.99 Aligned_cols=171 Identities=15% Similarity=0.155 Sum_probs=89.6
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC-----CchhHHHHHHHHHHHHH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLE-----LSEEAEFRRASRMFERL 203 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~l~~~l 203 (790)
+.+.++|+.|+||||+|+.++....-.. |.... ....-...+.+....... .......+.+..+.+..
T Consensus 39 hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~~-~Cg~C~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~ 111 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDGD-CCNSCSVCESINTNQSVDIVELDAASNNGVDEIRNIIDNI 111 (605)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCCC-CCcccHHHHHHHcCCCCceEEeccccccCHHHHHHHHHHH
Confidence 6788999999999999999998763221 11000 001111111111110000 00000011111222211
Q ss_pred H----cCCcEEEEEeCCCCc--cCccccCccCCCCCCCcEEEEEe-CChhHHhh-hCCCceEEccCCCHHHHHHHHHHHh
Q 039180 204 K----NEKKILLILDNTWKS--LDLGTIGIPFGVEHRGCKLLFTT-RDLDVLIR-MGSEKNFSIGILNEQEAWRLFKIIA 275 (790)
Q Consensus 204 ~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTt-R~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~ 275 (790)
. .+++-++|+|+++.. ..+..+...+-.......+|++| ....+... ......+++.+++.++....+...+
T Consensus 112 ~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il 191 (605)
T PRK05896 112 NYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIA 191 (605)
T ss_pred HhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHH
Confidence 1 134457999998764 33444444443333455555444 44444433 4456789999999999998888866
Q ss_pred CCCCCCcchHHHHHHHHHHhcCCcH-HHHHHHH
Q 039180 276 GAYVENRELKSTATSVAKACRGLPI-ALTIVVK 307 (790)
Q Consensus 276 ~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~~~ 307 (790)
...... -..+.+..+++.++|.+. |+..+-.
T Consensus 192 ~kegi~-Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 192 KKEKIK-IEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHcCCC-CCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 432211 124567789999999664 4444433
No 125
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.59 E-value=0.00042 Score=66.36 Aligned_cols=153 Identities=19% Similarity=0.176 Sum_probs=77.7
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcC
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNE 206 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 206 (790)
.+.-+.++|++|+||||||..+++..... | .+++........++ ..++. .+.
T Consensus 49 ~l~h~lf~GPPG~GKTTLA~IIA~e~~~~--~---~~~sg~~i~k~~dl-~~il~--------------------~l~-- 100 (233)
T PF05496_consen 49 ALDHMLFYGPPGLGKTTLARIIANELGVN--F---KITSGPAIEKAGDL-AAILT--------------------NLK-- 100 (233)
T ss_dssp ---EEEEESSTTSSHHHHHHHHHHHCT----E---EEEECCC--SCHHH-HHHHH--------------------T----
T ss_pred CcceEEEECCCccchhHHHHHHHhccCCC--e---EeccchhhhhHHHH-HHHHH--------------------hcC--
Confidence 45678999999999999999999987543 3 23333221111111 11222 221
Q ss_pred CcEEEEEeCCCCcc--C-------ccccCc--cCCC----------CCCCcEEEEEeCChhHHhhhCCC--ceEEccCCC
Q 039180 207 KKILLILDNTWKSL--D-------LGTIGI--PFGV----------EHRGCKLLFTTRDLDVLIRMGSE--KNFSIGILN 263 (790)
Q Consensus 207 kr~LlVlDdv~~~~--~-------~~~l~~--~~~~----------~~~gs~iliTtR~~~v~~~~~~~--~~~~l~~L~ 263 (790)
++-+|.+|++-... + .++... .... -.+-+-|=-|||...+...+... ...+++..+
T Consensus 101 ~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~ 180 (233)
T PF05496_consen 101 EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYS 180 (233)
T ss_dssp TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----T
T ss_pred CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCC
Confidence 33456667664320 0 111000 0000 01223355688875555443332 356899999
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHHHHHHHHH
Q 039180 264 EQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIALTIVVKA 308 (790)
Q Consensus 264 ~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~ 308 (790)
.+|-.++..+.+.- ..-+-.++.+..|++.+.|-|.-..-+-..
T Consensus 181 ~~el~~Iv~r~a~~-l~i~i~~~~~~~Ia~rsrGtPRiAnrll~r 224 (233)
T PF05496_consen 181 EEELAKIVKRSARI-LNIEIDEDAAEEIARRSRGTPRIANRLLRR 224 (233)
T ss_dssp HHHHHHHHHHCCHC-TT-EE-HHHHHHHHHCTTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hCCCcCHHHHHHHHHhcCCChHHHHHHHHH
Confidence 99999999876642 122333577899999999999754444333
No 126
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.58 E-value=0.0012 Score=68.86 Aligned_cols=151 Identities=11% Similarity=0.098 Sum_probs=90.2
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhc--------------------cCCCEEEEEEeC---CCCCHHHHHHHHHHHhC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIED--------------------ELYDMVVFSEVT---QSPDIKQIQQEIAEKLG 184 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~--------------------~~f~~~~wv~~~---~~~~~~~~~~~i~~~l~ 184 (790)
.+-+.++|+.|+||||+|..++...--. .|-| +.|+.-. +...+++
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~~~~~~~~i~id~---------- 90 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPD-NFVLEPEEADKTIKVDQ---------- 90 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccCCCCCCCHHH----------
Confidence 4678899999999999999998875321 1222 2333211 1122222
Q ss_pred CCCchhHHHHHHHHHHHHHH----cCCcEEEEEeCCCCc--cCccccCccCCCCCCCcEEEEEeCCh-hHHhh-hCCCce
Q 039180 185 LELSEEAEFRRASRMFERLK----NEKKILLILDNTWKS--LDLGTIGIPFGVEHRGCKLLFTTRDL-DVLIR-MGSEKN 256 (790)
Q Consensus 185 ~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtR~~-~v~~~-~~~~~~ 256 (790)
+..+.+.+. .+++-++|+|+++.. ...+.+...+-....++.+|+||.+. .+... .+..+.
T Consensus 91 -----------iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~ 159 (328)
T PRK05707 91 -----------VRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQ 159 (328)
T ss_pred -----------HHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhcee
Confidence 222222221 234556678999765 23444434443333466677777663 44433 455678
Q ss_pred EEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHHHHHH
Q 039180 257 FSIGILNEQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIALTIV 305 (790)
Q Consensus 257 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 305 (790)
+.+.+++.+++.+.+...... ...+.+..++..++|.|.....+
T Consensus 160 ~~~~~~~~~~~~~~L~~~~~~-----~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 160 QACPLPSNEESLQWLQQALPE-----SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred eeCCCcCHHHHHHHHHHhccc-----CChHHHHHHHHHcCCCHHHHHHH
Confidence 999999999999988765311 11334567889999999755443
No 127
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.55 E-value=0.0015 Score=72.18 Aligned_cols=158 Identities=14% Similarity=0.165 Sum_probs=91.9
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhcc--------------------CCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCc
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDE--------------------LYDMVVFSEVTQSPDIKQIQQEIAEKLGLELS 188 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~--------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 188 (790)
++..++|+.|+||||+|+.++...-... |++ ++.+.......+..+.. +.......
T Consensus 37 hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d-v~eldaas~~gId~IRe-lie~~~~~-- 112 (535)
T PRK08451 37 HAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID-IIEMDAASNRGIDDIRE-LIEQTKYK-- 112 (535)
T ss_pred eeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe-EEEeccccccCHHHHHH-HHHHHhhC--
Confidence 6778999999999999999887753211 111 23333222222222221 11111000
Q ss_pred hhHHHHHHHHHHHHHHcCCcEEEEEeCCCCcc--CccccCccCCCCCCCcEEEEEeCCh-hHHhh-hCCCceEEccCCCH
Q 039180 189 EEAEFRRASRMFERLKNEKKILLILDNTWKSL--DLGTIGIPFGVEHRGCKLLFTTRDL-DVLIR-MGSEKNFSIGILNE 264 (790)
Q Consensus 189 ~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR~~-~v~~~-~~~~~~~~l~~L~~ 264 (790)
-..+++-++|+|++.... ..+++...+-.....+++|++|.+. .+... ......+++.+++.
T Consensus 113 --------------P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~ 178 (535)
T PRK08451 113 --------------PSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQ 178 (535)
T ss_pred --------------cccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCH
Confidence 001456799999996652 3344444443334566766666552 22222 33457899999999
Q ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHHHHHH
Q 039180 265 QEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIALTIV 305 (790)
Q Consensus 265 ~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 305 (790)
++..+.+.+.+...... ..++.+..|++.++|.+.-+...
T Consensus 179 ~ei~~~L~~Il~~EGi~-i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 179 NSIISHLKTILEKEGVS-YEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred HHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHHHHH
Confidence 99999888766532222 22467788999999988554444
No 128
>CHL00181 cbbX CbbX; Provisional
Probab=97.55 E-value=0.0032 Score=64.68 Aligned_cols=132 Identities=11% Similarity=0.074 Sum_probs=71.7
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCCc
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEKK 208 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 208 (790)
..+.++|++|+||||+|+.++........-...-|+.++. .+ +...+-.... .....+++.. ..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~----l~~~~~g~~~-----~~~~~~l~~a---~g 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DD----LVGQYIGHTA-----PKTKEVLKKA---MG 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HH----HHHHHhccch-----HHHHHHHHHc---cC
Confidence 3488899999999999999988754322211112444441 11 2222211110 1122233322 22
Q ss_pred EEEEEeCCCCc-----------cCccccCccCCCCCCCcEEEEEeCChhHHhhh--------CCCceEEccCCCHHHHHH
Q 039180 209 ILLILDNTWKS-----------LDLGTIGIPFGVEHRGCKLLFTTRDLDVLIRM--------GSEKNFSIGILNEQEAWR 269 (790)
Q Consensus 209 ~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~iliTtR~~~v~~~~--------~~~~~~~l~~L~~~~~~~ 269 (790)
-+|++|++... +..+.+...+.....+.+||+++....+.... .....+..++++.++..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 48999999643 11112222233333456677777644332211 123479999999999999
Q ss_pred HHHHHhC
Q 039180 270 LFKIIAG 276 (790)
Q Consensus 270 Lf~~~~~ 276 (790)
++.+.+.
T Consensus 204 I~~~~l~ 210 (287)
T CHL00181 204 IAKIMLE 210 (287)
T ss_pred HHHHHHH
Confidence 9888764
No 129
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.54 E-value=0.00093 Score=74.67 Aligned_cols=159 Identities=13% Similarity=0.137 Sum_probs=90.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhcc-------------------CCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCch
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDE-------------------LYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSE 189 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~-------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 189 (790)
+.+.++|+.|+||||+|+.++...--.. .|.-++++..+....+..+ +++.......
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~~~vd~i-r~l~~~~~~~--- 114 (527)
T PRK14969 39 HAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQVDAM-RELLDNAQYA--- 114 (527)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccccCCHHHH-HHHHHHHhhC---
Confidence 5678999999999999999987753211 1112233332222222221 1222221100
Q ss_pred hHHHHHHHHHHHHHHcCCcEEEEEeCCCCcc--CccccCccCCCCCCCcEEEEEeC-ChhHHhh-hCCCceEEccCCCHH
Q 039180 190 EAEFRRASRMFERLKNEKKILLILDNTWKSL--DLGTIGIPFGVEHRGCKLLFTTR-DLDVLIR-MGSEKNFSIGILNEQ 265 (790)
Q Consensus 190 ~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR-~~~v~~~-~~~~~~~~l~~L~~~ 265 (790)
-..+++-++|+|++.... ..+.+...+-.....+.+|++|. .+.+... ......+++.+++.+
T Consensus 115 -------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~ 181 (527)
T PRK14969 115 -------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPP 181 (527)
T ss_pred -------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHH
Confidence 012567799999997653 23444444433334555555554 3333322 333468999999999
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcH-HHHHH
Q 039180 266 EAWRLFKIIAGAYVENRELKSTATSVAKACRGLPI-ALTIV 305 (790)
Q Consensus 266 ~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~ 305 (790)
+..+.+.+.+...... ..++....|++.++|.+. |+..+
T Consensus 182 ~i~~~L~~il~~egi~-~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 182 LIVSHLQHILEQENIP-FDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred HHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 9998887766422221 234566789999999775 33333
No 130
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.53 E-value=0.001 Score=74.39 Aligned_cols=162 Identities=14% Similarity=0.148 Sum_probs=93.7
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhcc--------------------CCCEEEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDE--------------------LYDMVVFSEVTQSPDIKQIQQEIAEKLGLEL 187 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~--------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 187 (790)
.+.+.++|+.|+||||+|+.+++..--.. |.| ++++.......+..+
T Consensus 38 ~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpD-v~eId~a~~~~Id~i------------ 104 (624)
T PRK14959 38 APAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVD-VVEIDGASNRGIDDA------------ 104 (624)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCc-eEEEecccccCHHHH------------
Confidence 36788999999999999999998763211 111 223322111111111
Q ss_pred chhHHHHHHHHHHHHH-HcCCcEEEEEeCCCCc--cCccccCccCCCCCCCcEEEEEeCC-hhHHhh-hCCCceEEccCC
Q 039180 188 SEEAEFRRASRMFERL-KNEKKILLILDNTWKS--LDLGTIGIPFGVEHRGCKLLFTTRD-LDVLIR-MGSEKNFSIGIL 262 (790)
Q Consensus 188 ~~~~~~~~~~~l~~~l-~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtR~-~~v~~~-~~~~~~~~l~~L 262 (790)
..+....... ..+++-++|+|++... ...+.+...+-.......+|++|.. ..+... ......+++.++
T Consensus 105 ------R~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pL 178 (624)
T PRK14959 105 ------KRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRL 178 (624)
T ss_pred ------HHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCC
Confidence 1111111111 1346679999999765 3344444444322334556565544 444433 344568999999
Q ss_pred CHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCc-HHHHHHHHHH
Q 039180 263 NEQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLP-IALTIVVKAL 309 (790)
Q Consensus 263 ~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~~~~~l 309 (790)
+.++....+...+..... .-.++.++.|++.++|.+ .|+..+..++
T Consensus 179 s~~eL~~~L~~il~~egi-~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 179 SEAGLEAHLTKVLGREGV-DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred CHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999888876643221 123456788999999955 5666665544
No 131
>PF14516 AAA_35: AAA-like domain
Probab=97.53 E-value=0.0026 Score=67.05 Aligned_cols=177 Identities=14% Similarity=0.144 Sum_probs=103.0
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCC-----CCHHHHHHHH----HHHhCCCCchh--HH-----
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQS-----PDIKQIQQEI----AEKLGLELSEE--AE----- 192 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~i----~~~l~~~~~~~--~~----- 192 (790)
..+.|.|+-.+|||+|..++.+..+.. .+ .++++++... .+..+.++.+ .++++....-. .+
T Consensus 32 ~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~ 109 (331)
T PF14516_consen 32 SYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGS 109 (331)
T ss_pred CEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCC
Confidence 467899999999999999999887654 23 3557776542 3455555444 45555442111 00
Q ss_pred -HHHHHHHHHHHH--cCCcEEEEEeCCCCccCcc----ccCccC----C----CCCCCcEEEEEeCChh--HHhh-----
Q 039180 193 -FRRASRMFERLK--NEKKILLILDNTWKSLDLG----TIGIPF----G----VEHRGCKLLFTTRDLD--VLIR----- 250 (790)
Q Consensus 193 -~~~~~~l~~~l~--~~kr~LlVlDdv~~~~~~~----~l~~~~----~----~~~~gs~iliTtR~~~--v~~~----- 250 (790)
......+.+.+. .+++.+|++|+++...... ++...+ . ......-.+|...+.+ ....
T Consensus 110 ~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SP 189 (331)
T PF14516_consen 110 KISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSP 189 (331)
T ss_pred hhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCC
Confidence 011112222222 2588999999997653211 110000 0 0001111122222111 1111
Q ss_pred hCCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHHHHHHHHHHhcC
Q 039180 251 MGSEKNFSIGILNEQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIALTIVVKALRNK 312 (790)
Q Consensus 251 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~ 312 (790)
......+.+++++.+|...|..++-... -....++|...++|+|.-+..++..+...
T Consensus 190 FNIg~~i~L~~Ft~~ev~~L~~~~~~~~-----~~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 190 FNIGQPIELPDFTPEEVQELAQRYGLEF-----SQEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred cccccceeCCCCCHHHHHHHHHhhhccC-----CHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 2334589999999999999988764321 12238899999999999999999999754
No 132
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.52 E-value=0.00062 Score=75.25 Aligned_cols=181 Identities=18% Similarity=0.161 Sum_probs=105.2
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcC
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNE 206 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 206 (790)
...-+.|+|..|+|||+|++.+++.......-..+++++..+ +..++...+... ......+.+..
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~------~~~~~~~~~~~~--------~~~~~~~~~~~- 211 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK------FTNDFVNALRNN--------TMEEFKEKYRS- 211 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH------HHHHHHHHHHcC--------cHHHHHHHHhc-
Confidence 345689999999999999999999876442223456665442 233333333211 12233444442
Q ss_pred CcEEEEEeCCCCccC---c-cccCccCCC-CCCCcEEEEEeCCh--h-------HHhhhCCCceEEccCCCHHHHHHHHH
Q 039180 207 KKILLILDNTWKSLD---L-GTIGIPFGV-EHRGCKLLFTTRDL--D-------VLIRMGSEKNFSIGILNEQEAWRLFK 272 (790)
Q Consensus 207 kr~LlVlDdv~~~~~---~-~~l~~~~~~-~~~gs~iliTtR~~--~-------v~~~~~~~~~~~l~~L~~~~~~~Lf~ 272 (790)
.-+||+||+..... + +.+...+.. ...|..+|+|+... . +...+....++++++.+.++-.++++
T Consensus 212 -~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~ 290 (450)
T PRK00149 212 -VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILK 290 (450)
T ss_pred -CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHH
Confidence 34899999965421 1 122222211 12345588887653 1 12224444689999999999999999
Q ss_pred HHhCCCCCCcchHHHHHHHHHHhcCCcHHHHHHHHHH------hcC--ChhHHHHHHHHh
Q 039180 273 IIAGAYVENRELKSTATSVAKACRGLPIALTIVVKAL------RNK--ELPEWKNALQEL 324 (790)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l------~~~--~~~~w~~~l~~l 324 (790)
+.+.... ..--+++.+-|++.+.|..-.+.-+-..+ .++ +....+.++..+
T Consensus 291 ~~~~~~~-~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 291 KKAEEEG-IDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHHcC-CCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 9875321 12235678888888888765433222222 122 555566666654
No 133
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.52 E-value=0.00025 Score=64.66 Aligned_cols=90 Identities=23% Similarity=0.159 Sum_probs=51.8
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCCc
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEKK 208 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 208 (790)
..+.|+|++|+||||+++.++....... ..++.++.+........... ...................+.......+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 5789999999999999999998875432 23566655544332222211 11111111111222333445555544334
Q ss_pred EEEEEeCCCCccC
Q 039180 209 ILLILDNTWKSLD 221 (790)
Q Consensus 209 ~LlVlDdv~~~~~ 221 (790)
.+|++|++.....
T Consensus 80 ~viiiDei~~~~~ 92 (148)
T smart00382 80 DVLILDEITSLLD 92 (148)
T ss_pred CEEEEECCcccCC
Confidence 8999999987744
No 134
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.51 E-value=0.0028 Score=66.73 Aligned_cols=89 Identities=17% Similarity=0.178 Sum_probs=54.9
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHc
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQS-PDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKN 205 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 205 (790)
.-++++++|+.|+||||++.+++.....+.....+..++.... ....+-++...+.++.+................+.+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 3479999999999999999999987643322235666665442 344555666667777654332222223344445543
Q ss_pred CCcEEEEEeCCC
Q 039180 206 EKKILLILDNTW 217 (790)
Q Consensus 206 ~kr~LlVlDdv~ 217 (790)
+ =++++|..-
T Consensus 216 -~-DlVLIDTaG 225 (374)
T PRK14722 216 -K-HMVLIDTIG 225 (374)
T ss_pred -C-CEEEEcCCC
Confidence 4 466688874
No 135
>PRK06620 hypothetical protein; Validated
Probab=97.49 E-value=0.00063 Score=66.56 Aligned_cols=133 Identities=14% Similarity=-0.001 Sum_probs=78.5
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCCc
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEKK 208 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 208 (790)
+.+.|+|++|+|||+|++.+++.... .++. ..+.. . +.+. ..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-------~~~~--~~~~~------------------------~---~~~~--~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-------YIIK--DIFFN------------------------E---EILE--KY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-------EEcc--hhhhc------------------------h---hHHh--cC
Confidence 57899999999999999987765421 1111 00000 0 0111 23
Q ss_pred EEEEEeCCCCccCccccCccCCC-CCCCcEEEEEeCChh-------HHhhhCCCceEEccCCCHHHHHHHHHHHhCCCCC
Q 039180 209 ILLILDNTWKSLDLGTIGIPFGV-EHRGCKLLFTTRDLD-------VLIRMGSEKNFSIGILNEQEAWRLFKIIAGAYVE 280 (790)
Q Consensus 209 ~LlVlDdv~~~~~~~~l~~~~~~-~~~gs~iliTtR~~~-------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~ 280 (790)
-++++||+...++ ..+...+.. ...|..+|+|++... ....+...-++++++++.++-.+++++.+....
T Consensus 87 d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~- 164 (214)
T PRK06620 87 NAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS- 164 (214)
T ss_pred CEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC-
Confidence 5788899974321 112111111 245678999988532 222244556899999999998888888765321
Q ss_pred CcchHHHHHHHHHHhcCCcHH
Q 039180 281 NRELKSTATSVAKACRGLPIA 301 (790)
Q Consensus 281 ~~~~~~~~~~i~~~~~glPla 301 (790)
-.--+++.+-|++.+.|---.
T Consensus 165 l~l~~ev~~~L~~~~~~d~r~ 185 (214)
T PRK06620 165 VTISRQIIDFLLVNLPREYSK 185 (214)
T ss_pred CCCCHHHHHHHHHHccCCHHH
Confidence 122356777788877765443
No 136
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.48 E-value=0.00021 Score=64.30 Aligned_cols=69 Identities=20% Similarity=0.174 Sum_probs=44.7
Q ss_pred EEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC-cE
Q 039180 131 IGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK-KI 209 (790)
Q Consensus 131 v~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k-r~ 209 (790)
|.|+|+.|+||||+|+.+++.... .++.++.+...+. ........+..+++...... +.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~-----~~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF-----PFIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS-----EEEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhccc-----ccccccccccccc---------------cccccccccccccccccccccce
Confidence 579999999999999999998742 2455554431100 11223334555555554433 79
Q ss_pred EEEEeCCCCc
Q 039180 210 LLILDNTWKS 219 (790)
Q Consensus 210 LlVlDdv~~~ 219 (790)
+|++||++..
T Consensus 61 vl~iDe~d~l 70 (132)
T PF00004_consen 61 VLFIDEIDKL 70 (132)
T ss_dssp EEEEETGGGT
T ss_pred eeeeccchhc
Confidence 9999998755
No 137
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.46 E-value=4.2e-05 Score=86.22 Aligned_cols=246 Identities=19% Similarity=0.179 Sum_probs=120.1
Q ss_pred hccCCceEEEEecCcc-ccC--CChhhhhccccceeeccCc-c-cccc---chhhhhccCcccEEeccCCC-Cc--ccch
Q 039180 497 FKGVKKLRVVALVKML-LSS--LPSSIYLLVNLQTLCLDQS-I-LRDI---DIAIIGKLKNLKILSFVRSD-IV--QLPK 565 (790)
Q Consensus 497 ~~~l~~L~~L~L~~~~-~~~--lp~~~~~l~~L~~L~L~~~-~-l~~l---~p~~i~~l~~L~~L~L~~~~-l~--~lp~ 565 (790)
...++.|+.|.+.++. +.. +-.....+++|+.|+++++ . .... .......+++|+.|+++++. ++ .+..
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 3456777777777663 333 3345567777888887763 2 1111 02233455777777777775 44 2222
Q ss_pred hhhcccccceecCCccccccccCc-hhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCC
Q 039180 566 ALGELTKLRLSDLTDCFHLKVIAP-NVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDS 644 (790)
Q Consensus 566 ~l~~l~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 644 (790)
....+++|++|.+.+|..++...- ....++++|++|++++|.... .........++++|+.|.+.....
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~---------d~~l~~~~~~c~~l~~l~~~~~~~- 333 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT---------DSGLEALLKNCPNLRELKLLSLNG- 333 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch---------HHHHHHHHHhCcchhhhhhhhcCC-
Confidence 222367777777776654332221 223456777777777765431 111122233455555554432221
Q ss_pred CCCccccccccceeEEEecCCCC----CCCccccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCCcccc
Q 039180 645 ILPESFLTQKLERFKISIGNESF----MPSQSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKY 720 (790)
Q Consensus 645 ~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~ 720 (790)
+..++.+.+....... .......+++|+.+.+..+...+. ...+.+.+|+.++
T Consensus 334 -------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~---------------~~~~~l~gc~~l~- 390 (482)
T KOG1947|consen 334 -------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDL---------------GLELSLRGCPNLT- 390 (482)
T ss_pred -------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCc---------------chHHHhcCCcccc-
Confidence 2333333332222111 011344566666666666542211 0034445555442
Q ss_pred cchhHHHhccccccEEeeccCchhhhHhhcCCCCCCCCcccCCccceeeccccccccccCh
Q 039180 721 IFSASMIQNFELLRELSIADCRGLREIISKDRADHVTPCFVFPQMTTLRLEILPELKCYTL 781 (790)
Q Consensus 721 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~l~~ 781 (790)
.........+..|+.|++..|...+.-...... ..+.++..+++.+|+.+.....
T Consensus 391 ~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~------~~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 391 ESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLA------DSCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred hHHHHHhccCCccceEecccCccccccchHHHh------hhhhccccCCccCcccccchhh
Confidence 111112223333677777777654443332221 0156667777777776665544
No 138
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.44 E-value=0.00026 Score=75.02 Aligned_cols=95 Identities=7% Similarity=-0.004 Sum_probs=61.3
Q ss_pred CCcEEEEEeCCCCcc--CccccCccCCCCCCCcEEEEEeCCh-hHHhh-hCCCceEEccCCCHHHHHHHHHHHhCCCCCC
Q 039180 206 EKKILLILDNTWKSL--DLGTIGIPFGVEHRGCKLLFTTRDL-DVLIR-MGSEKNFSIGILNEQEAWRLFKIIAGAYVEN 281 (790)
Q Consensus 206 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 281 (790)
+.+.++|+||++... ....+...+-....++.+|++|.+. .+... ......+.+.+++.++..+++.......
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~--- 216 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL--- 216 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC---
Confidence 567799999997552 3334444443333456666666654 33333 3456799999999999999998764221
Q ss_pred cchHHHHHHHHHHhcCCcHHHHHH
Q 039180 282 RELKSTATSVAKACRGLPIALTIV 305 (790)
Q Consensus 282 ~~~~~~~~~i~~~~~glPlai~~~ 305 (790)
..+....+++.++|.|.....+
T Consensus 217 --~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 217 --PDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred --CHHHHHHHHHHcCCCHHHHHHH
Confidence 1122367899999999855444
No 139
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.43 E-value=0.00018 Score=66.51 Aligned_cols=83 Identities=23% Similarity=0.293 Sum_probs=44.2
Q ss_pred cccEEeccCCCCcccchhhhcccccceecCCccccccccCchhhccccccceEecccCCccchhhccccccccccccccc
Q 039180 549 NLKILSFVRSDIVQLPKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELM 628 (790)
Q Consensus 549 ~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~ 628 (790)
+...+||++|.+..++. +..+++|.+|.+++| .+..+.+..-.-+++|+.|.+.+|++... ..+..+.
T Consensus 43 ~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l----------~dl~pLa 110 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQEL----------GDLDPLA 110 (233)
T ss_pred ccceecccccchhhccc-CCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhh----------hhcchhc
Confidence 45556666665554432 445666666666665 55555554333345566666666655311 1233455
Q ss_pred CCCCCcEEEEEecCC
Q 039180 629 NLPWLTTLEIDVKND 643 (790)
Q Consensus 629 ~l~~L~~L~l~~~~~ 643 (790)
.+|+|++|.+-+|..
T Consensus 111 ~~p~L~~Ltll~Npv 125 (233)
T KOG1644|consen 111 SCPKLEYLTLLGNPV 125 (233)
T ss_pred cCCccceeeecCCch
Confidence 556666666655554
No 140
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.43 E-value=0.0079 Score=58.36 Aligned_cols=177 Identities=15% Similarity=0.142 Sum_probs=105.0
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeC-CCCCHHHHHHHHHHHhCCCCch--hHHHH-HHHHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVT-QSPDIKQIQQEIAEKLGLELSE--EAEFR-RASRMFER 202 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~--~~~~~-~~~~l~~~ 202 (790)
+-+++.++|.-|+|||++++.....+..+ .++-+.++ ...+...+...|+..+..+... ....+ ....+..-
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~~d----~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al 125 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLNED----QVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAAL 125 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCC----ceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHH
Confidence 45789999999999999999666554322 22224443 4567778888888888763221 11222 23344444
Q ss_pred HHcCCc-EEEEEeCCCCcc--CccccCccCC---CCCCCcEEEEEeCCh-------hHHhhhC--CCceEEccCCCHHHH
Q 039180 203 LKNEKK-ILLILDNTWKSL--DLGTIGIPFG---VEHRGCKLLFTTRDL-------DVLIRMG--SEKNFSIGILNEQEA 267 (790)
Q Consensus 203 l~~~kr-~LlVlDdv~~~~--~~~~l~~~~~---~~~~gs~iliTtR~~-------~v~~~~~--~~~~~~l~~L~~~~~ 267 (790)
..+++| ..+++||..+.. ..+.++.... +...--+|+..-..+ .+....+ ..-.|++.|++.++.
T Consensus 126 ~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t 205 (269)
T COG3267 126 VKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAET 205 (269)
T ss_pred HHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHH
Confidence 556788 999999986542 2222211111 111111233322211 1111111 122489999999999
Q ss_pred HHHHHHHhCCCCC--CcchHHHHHHHHHHhcCCcHHHHHHHH
Q 039180 268 WRLFKIIAGAYVE--NRELKSTATSVAKACRGLPIALTIVVK 307 (790)
Q Consensus 268 ~~Lf~~~~~~~~~--~~~~~~~~~~i~~~~~glPlai~~~~~ 307 (790)
..+++.+...... +-...+....|..+..|.|.+|..++.
T Consensus 206 ~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 206 GLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 9988887753222 222356778899999999999988875
No 141
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.43 E-value=0.0033 Score=64.21 Aligned_cols=141 Identities=18% Similarity=0.208 Sum_probs=89.3
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC-Cchh---HHHHHHHH---HHH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLE-LSEE---AEFRRASR---MFE 201 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-~~~~---~~~~~~~~---l~~ 201 (790)
..|.|+|.+|.|||.+.+++.+.... ..+|+++-+.++.+-+...|+.+.+.. .+.. .+.+.... +..
T Consensus 31 S~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~ 105 (438)
T KOG2543|consen 31 SIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLV 105 (438)
T ss_pred eeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHH
Confidence 45689999999999999999988632 268999999999999999999998522 2211 11122222 222
Q ss_pred H---HH-cCCcEEEEEeCCCCccCccccCccCC------CCCCCcEEEEEeCChhHHhh---hCCCc--eEEccCCCHHH
Q 039180 202 R---LK-NEKKILLILDNTWKSLDLGTIGIPFG------VEHRGCKLLFTTRDLDVLIR---MGSEK--NFSIGILNEQE 266 (790)
Q Consensus 202 ~---l~-~~kr~LlVlDdv~~~~~~~~l~~~~~------~~~~gs~iliTtR~~~v~~~---~~~~~--~~~l~~L~~~~ 266 (790)
+ .. .++.++||||+++...+.+++.-+.. ...+. -+|+++-...-... ++... ++.....+.+|
T Consensus 106 q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~-i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e 184 (438)
T KOG2543|consen 106 QWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPT-IVIILSAPSCEKQYLINTGTLEIVVLHFPQYSVEE 184 (438)
T ss_pred hhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCc-eEEEEeccccHHHhhcccCCCCceEEecCCCCHHH
Confidence 2 11 24689999999988776654321110 12222 34444443211111 34443 56677889999
Q ss_pred HHHHHHHHh
Q 039180 267 AWRLFKIIA 275 (790)
Q Consensus 267 ~~~Lf~~~~ 275 (790)
..+++.+.-
T Consensus 185 ~~~Il~~~~ 193 (438)
T KOG2543|consen 185 TQVILSRDN 193 (438)
T ss_pred HHHHHhcCC
Confidence 999987643
No 142
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.41 E-value=0.0015 Score=70.80 Aligned_cols=174 Identities=13% Similarity=0.098 Sum_probs=92.2
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEE-eCCCCCHHHHHHHHHHHhCCC-----CchhHHHHHHHHHHHH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSE-VTQSPDIKQIQQEIAEKLGLE-----LSEEAEFRRASRMFER 202 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~l~~~ 202 (790)
+.+.++|+.|+||||+|..++....-...++...|.. ...+...-...+.+......+ .......+.+..+.+.
T Consensus 39 ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~ 118 (397)
T PRK14955 39 HGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLREN 118 (397)
T ss_pred eeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHH
Confidence 5688999999999999999998764321111000000 000000001111111110000 0000011222333333
Q ss_pred HH----cCCcEEEEEeCCCCcc--CccccCccCCCCCCCcEEEEEe-CChhHHhh-hCCCceEEccCCCHHHHHHHHHHH
Q 039180 203 LK----NEKKILLILDNTWKSL--DLGTIGIPFGVEHRGCKLLFTT-RDLDVLIR-MGSEKNFSIGILNEQEAWRLFKII 274 (790)
Q Consensus 203 l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTt-R~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~ 274 (790)
+. .+++-++|+|++.... .++.+...+....+.+.+|++| +...+... ......+++.+++.++..+.+...
T Consensus 119 ~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~ 198 (397)
T PRK14955 119 VRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGI 198 (397)
T ss_pred HhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 32 2456789999987553 4555555554444566666555 43444433 223457899999999998888776
Q ss_pred hCCCCCCcchHHHHHHHHHHhcCCcHHHH
Q 039180 275 AGAYVENRELKSTATSVAKACRGLPIALT 303 (790)
Q Consensus 275 ~~~~~~~~~~~~~~~~i~~~~~glPlai~ 303 (790)
+.... ..-..+.++.|++.++|.+--+.
T Consensus 199 ~~~~g-~~i~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 199 CEAEG-ISVDADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred HHHcC-CCCCHHHHHHHHHHcCCCHHHHH
Confidence 64221 11234678889999999775433
No 143
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.40 E-value=0.0043 Score=68.52 Aligned_cols=156 Identities=12% Similarity=0.064 Sum_probs=88.8
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhc-------------------cCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCch
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIED-------------------ELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSE 189 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~-------------------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 189 (790)
+.+.++|+.|+||||+|+.++...... ..+.-++++..+.......
T Consensus 39 hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas~~gvd~--------------- 103 (486)
T PRK14953 39 HAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAASNRGIDD--------------- 103 (486)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCccCCCHHH---------------
Confidence 567889999999999999998765310 0111122332222111111
Q ss_pred hHHHHHHHHHHHHHH----cCCcEEEEEeCCCCc--cCccccCccCCCCCCCcEEEEEe-CChhHHhh-hCCCceEEccC
Q 039180 190 EAEFRRASRMFERLK----NEKKILLILDNTWKS--LDLGTIGIPFGVEHRGCKLLFTT-RDLDVLIR-MGSEKNFSIGI 261 (790)
Q Consensus 190 ~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTt-R~~~v~~~-~~~~~~~~l~~ 261 (790)
+..+.+... .+++-++|+|++... ...+.+...+........+|++| +...+... ......+.+.+
T Consensus 104 ------ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ 177 (486)
T PRK14953 104 ------IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSK 177 (486)
T ss_pred ------HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCC
Confidence 111222211 246679999998755 23344433443333445555544 43444333 34456899999
Q ss_pred CCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHHHHHHH
Q 039180 262 LNEQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIALTIVV 306 (790)
Q Consensus 262 L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~ 306 (790)
++.++....+.+.+..... ....+.+..|++.++|.+..+....
T Consensus 178 ls~~el~~~L~~i~k~egi-~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 178 PTKEQIKEYLKRICNEEKI-EYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred CCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999888876642222 1224567778889999765444433
No 144
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.40 E-value=0.0011 Score=69.87 Aligned_cols=123 Identities=14% Similarity=0.174 Sum_probs=67.5
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH-cC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLK-NE 206 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~-~~ 206 (790)
.+++.++|++|+||||+|+.+++.... .+..++.+. .....+ +..+.. ...... .+
T Consensus 43 ~~~lll~G~~G~GKT~la~~l~~~~~~-----~~~~i~~~~-~~~~~i-~~~l~~----------------~~~~~~~~~ 99 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVAKALCNEVGA-----EVLFVNGSD-CRIDFV-RNRLTR----------------FASTVSLTG 99 (316)
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCc-----cceEeccCc-ccHHHH-HHHHHH----------------HHHhhcccC
Confidence 367888999999999999999887521 133444444 222111 111111 111110 12
Q ss_pred CcEEEEEeCCCCcc---CccccCccCCCCCCCcEEEEEeCChhHH-hh-hCCCceEEccCCCHHHHHHHHHH
Q 039180 207 KKILLILDNTWKSL---DLGTIGIPFGVEHRGCKLLFTTRDLDVL-IR-MGSEKNFSIGILNEQEAWRLFKI 273 (790)
Q Consensus 207 kr~LlVlDdv~~~~---~~~~l~~~~~~~~~gs~iliTtR~~~v~-~~-~~~~~~~~l~~L~~~~~~~Lf~~ 273 (790)
.+-++|+||++... ....+...+.....++++|+||...... .. ......+.+...+.++..+++..
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 45689999997551 1122322233334567888888753211 11 23334677777777777766554
No 145
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.39 E-value=0.002 Score=72.71 Aligned_cols=173 Identities=14% Similarity=0.114 Sum_probs=92.8
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCC--EEEEEEeCCCCCHHHHHHHHHHHhCCCC-----chhHHHHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYD--MVVFSEVTQSPDIKQIQQEIAEKLGLEL-----SEEAEFRRASRMF 200 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~l~ 200 (790)
.+-+.++|+.|+||||+|+.++...--..... ...+-.+..+ .-.+.|...-..+. ......+.+..+.
T Consensus 46 ~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c----~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIi 121 (598)
T PRK09111 46 AQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG----EHCQAIMEGRHVDVLEMDAASHTGVDDIREII 121 (598)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc----HHHHHHhcCCCCceEEecccccCCHHHHHHHH
Confidence 35688999999999999999998753221110 0000000100 11111211110000 0000111222233
Q ss_pred HHHH----cCCcEEEEEeCCCCcc--CccccCccCCCCCCCcEEEEEe-CChhHHhh-hCCCceEEccCCCHHHHHHHHH
Q 039180 201 ERLK----NEKKILLILDNTWKSL--DLGTIGIPFGVEHRGCKLLFTT-RDLDVLIR-MGSEKNFSIGILNEQEAWRLFK 272 (790)
Q Consensus 201 ~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTt-R~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~ 272 (790)
+... .+++-++|+|++.... ..+.+...+-....++++|++| ....+... ......+.+..++.++..+.+.
T Consensus 122 e~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~ 201 (598)
T PRK09111 122 ESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLS 201 (598)
T ss_pred HHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHH
Confidence 3222 2456789999986553 3444444443344566666555 43444433 3445789999999999999988
Q ss_pred HHhCCCCCCcchHHHHHHHHHHhcCCcHHHHHH
Q 039180 273 IIAGAYVENRELKSTATSVAKACRGLPIALTIV 305 (790)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 305 (790)
+.+...... -..+....|++.++|.+.-+...
T Consensus 202 ~i~~kegi~-i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 202 RIAAKEGVE-VEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred HHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 876432211 22356788999999988654433
No 146
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.39 E-value=0.00096 Score=71.89 Aligned_cols=117 Identities=21% Similarity=0.248 Sum_probs=77.1
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCCc
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSP-DIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEKK 208 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 208 (790)
++.|.|+-++||||+++.+....... .++++..+.. +..++ .+..+ ...+.... ++
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l-~d~~~----------------~~~~~~~~-~~ 95 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIEL-LDLLR----------------AYIELKER-EK 95 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhH-HHHHH----------------HHHHhhcc-CC
Confidence 99999999999999996666554322 5555443322 11111 11111 11111111 66
Q ss_pred EEEEEeCCCCccCccccCccCCCCCCCcEEEEEeCChhHHhh------hCCCceEEccCCCHHHHHHH
Q 039180 209 ILLILDNTWKSLDLGTIGIPFGVEHRGCKLLFTTRDLDVLIR------MGSEKNFSIGILNEQEAWRL 270 (790)
Q Consensus 209 ~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtR~~~v~~~------~~~~~~~~l~~L~~~~~~~L 270 (790)
..|+||.|....+|......+.+.++. +|++|+-+...... .+....+.+-||+..|-..+
T Consensus 96 ~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 96 SYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred ceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 899999999999999877777776666 89999887543332 34556899999999888664
No 147
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.38 E-value=0.0034 Score=71.37 Aligned_cols=154 Identities=16% Similarity=0.139 Sum_probs=88.7
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccC-----------------CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDEL-----------------YDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEE 190 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~-----------------f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 190 (790)
.+.+.++|+.|+||||+|+.++...--... ++ ++++.......
T Consensus 40 ~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~D-vieidaasn~~------------------- 99 (725)
T PRK07133 40 SHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLD-IIEMDAASNNG------------------- 99 (725)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCc-EEEEeccccCC-------------------
Confidence 367789999999999999999876532110 11 11111111111
Q ss_pred HHHHHHHHHHHHHH----cCCcEEEEEeCCCCc--cCccccCccCCCCCCCcEEE-EEeCChhHHhh-hCCCceEEccCC
Q 039180 191 AEFRRASRMFERLK----NEKKILLILDNTWKS--LDLGTIGIPFGVEHRGCKLL-FTTRDLDVLIR-MGSEKNFSIGIL 262 (790)
Q Consensus 191 ~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~il-iTtR~~~v~~~-~~~~~~~~l~~L 262 (790)
.+.+..+.+.+. .+++-++|+|++... ..+.++...+-.......+| +||+...+... ....+.+.+.++
T Consensus 100 --vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L 177 (725)
T PRK07133 100 --VDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRI 177 (725)
T ss_pred --HHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCC
Confidence 111222222222 256679999998654 23444444333333344544 45555555443 445679999999
Q ss_pred CHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHHHHH
Q 039180 263 NEQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIALTI 304 (790)
Q Consensus 263 ~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 304 (790)
+.++..+.+...+...... ...+.+..|++.++|-+.-+..
T Consensus 178 ~~eeI~~~L~~il~kegI~-id~eAl~~LA~lS~GslR~Als 218 (725)
T PRK07133 178 SEDEIVSRLEFILEKENIS-YEKNALKLIAKLSSGSLRDALS 218 (725)
T ss_pred CHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 9999998888765422211 1235577899999987654333
No 148
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.36 E-value=0.0038 Score=71.03 Aligned_cols=156 Identities=13% Similarity=0.153 Sum_probs=92.8
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhh---------------------hccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAI---------------------EDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLE 186 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~---------------------~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 186 (790)
.+.+.++|+.|+||||+|+.++...- ...+|+ +..++......+..+. ++..++...
T Consensus 39 ~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n-~~~ld~~~~~~vd~Ir-~li~~~~~~ 116 (614)
T PRK14971 39 AHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN-IHELDAASNNSVDDIR-NLIEQVRIP 116 (614)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc-eEEecccccCCHHHHH-HHHHHHhhC
Confidence 36788999999999999998887653 112344 2333333222222222 222222111
Q ss_pred CchhHHHHHHHHHHHHHHcCCcEEEEEeCCCCcc--CccccCccCCCCCCCcEEEEEe-CChhHHhh-hCCCceEEccCC
Q 039180 187 LSEEAEFRRASRMFERLKNEKKILLILDNTWKSL--DLGTIGIPFGVEHRGCKLLFTT-RDLDVLIR-MGSEKNFSIGIL 262 (790)
Q Consensus 187 ~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTt-R~~~v~~~-~~~~~~~~l~~L 262 (790)
. ..+++-++|+|++.... ..+.+...+-....++.+|++| +...+... ......+++.++
T Consensus 117 P----------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~l 180 (614)
T PRK14971 117 P----------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRI 180 (614)
T ss_pred c----------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCC
Confidence 0 01356688999987653 3555545544444456655544 44555444 445678999999
Q ss_pred CHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHHH
Q 039180 263 NEQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIAL 302 (790)
Q Consensus 263 ~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 302 (790)
+.++..+.+.+.+...... .-.+.+..|++.++|-..-+
T Consensus 181 s~~ei~~~L~~ia~~egi~-i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 181 QVADIVNHLQYVASKEGIT-AEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred CHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 9999999888776532221 22356788999999966533
No 149
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.34 E-value=0.0045 Score=70.54 Aligned_cols=170 Identities=14% Similarity=0.119 Sum_probs=92.2
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCC-----chhHHHHHHHHHHHHH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLEL-----SEEAEFRRASRMFERL 203 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~l~~~l 203 (790)
+.+.++|+.|+||||+|+.++.......... -....+.-...+.|......+. ......+.+..+.+.+
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~ 112 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERV 112 (585)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHH
Confidence 5678999999999999999998763211100 0001111122222222111110 0000011122222222
Q ss_pred H----cCCcEEEEEeCCCCc--cCccccCccCCCCCCCcEEEEEeCC-hhHHhh-hCCCceEEccCCCHHHHHHHHHHHh
Q 039180 204 K----NEKKILLILDNTWKS--LDLGTIGIPFGVEHRGCKLLFTTRD-LDVLIR-MGSEKNFSIGILNEQEAWRLFKIIA 275 (790)
Q Consensus 204 ~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~ 275 (790)
. .+++-++|+|++... ...+.+...+......+.+|++|.+ ..+... ......+.+..++.++....+.+.+
T Consensus 113 ~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a 192 (585)
T PRK14950 113 QFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIA 192 (585)
T ss_pred hhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHH
Confidence 2 245679999998655 3344444444333345666666544 333332 3345688899999999988888776
Q ss_pred CCCCCCcchHHHHHHHHHHhcCCcHHHHHH
Q 039180 276 GAYVENRELKSTATSVAKACRGLPIALTIV 305 (790)
Q Consensus 276 ~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 305 (790)
...... -..+.+..|++.++|.+..+...
T Consensus 193 ~~egl~-i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 193 AAEGIN-LEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 532221 22456788999999988654433
No 150
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.34 E-value=0.0002 Score=66.27 Aligned_cols=103 Identities=24% Similarity=0.251 Sum_probs=55.9
Q ss_pred ceEEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccc--hhhhcccccceecCC
Q 039180 502 KLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLP--KALGELTKLRLSDLT 579 (790)
Q Consensus 502 ~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp--~~l~~l~~L~~L~l~ 579 (790)
..-.+||++|.+..++ .|..+..|.+|.|++|+|+.+.|.--..+++|..|.|.+|+|.++- ..+..+++|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 3445666666655442 3445666666666666666664444445566666666666555332 224556666666666
Q ss_pred ccccccccC---chhhccccccceEecccC
Q 039180 580 DCFHLKVIA---PNVISSLTRLEELYMGNC 606 (790)
Q Consensus 580 ~~~~l~~~~---~~~l~~l~~L~~L~l~~~ 606 (790)
+| .++... ...+..+++|++|++..-
T Consensus 122 ~N-pv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 122 GN-PVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CC-chhcccCceeEEEEecCcceEeehhhh
Confidence 55 222211 122455666666665543
No 151
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.33 E-value=0.0044 Score=69.62 Aligned_cols=154 Identities=14% Similarity=0.135 Sum_probs=90.5
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhcc--------------------CCCEEEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDE--------------------LYDMVVFSEVTQSPDIKQIQQEIAEKLGLEL 187 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~--------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 187 (790)
.+.+.++|+.|+||||+|+.++...-... +++ ++++.......+.+
T Consensus 38 ~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~d-v~~idgas~~~vdd------------- 103 (563)
T PRK06647 38 ANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLD-VIEIDGASNTSVQD------------- 103 (563)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCC-eEEecCcccCCHHH-------------
Confidence 36788999999999999999998753211 122 12221111111111
Q ss_pred chhHHHHHHHHHHHHH----HcCCcEEEEEeCCCCcc--CccccCccCCCCCCCcEEEEEeCC-hhHHhh-hCCCceEEc
Q 039180 188 SEEAEFRRASRMFERL----KNEKKILLILDNTWKSL--DLGTIGIPFGVEHRGCKLLFTTRD-LDVLIR-MGSEKNFSI 259 (790)
Q Consensus 188 ~~~~~~~~~~~l~~~l----~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR~-~~v~~~-~~~~~~~~l 259 (790)
+..+.+.+ ..+++-++|+|++.... .++.+...+-.......+|++|.. ..+... ......++.
T Consensus 104 --------Ir~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f 175 (563)
T PRK06647 104 --------VRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNF 175 (563)
T ss_pred --------HHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEe
Confidence 11222111 12466789999986553 345554554444445666655543 444333 344567999
Q ss_pred cCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHHHHH
Q 039180 260 GILNEQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIALTI 304 (790)
Q Consensus 260 ~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 304 (790)
.+++.++..+.+.+.+..... .-.++.+..|++.++|.+..+..
T Consensus 176 ~~l~~~el~~~L~~i~~~egi-~id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 176 RLLSLEKIYNMLKKVCLEDQI-KYEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred cCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 999999998888877643222 22346677799999997754433
No 152
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.32 E-value=0.0045 Score=66.70 Aligned_cols=155 Identities=12% Similarity=0.124 Sum_probs=85.5
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhc------cCCCE-EEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIED------ELYDM-VVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMF 200 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~------~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~ 200 (790)
.+.+.++|+.|+||||+|+.+++..... ..|.. ++-++.....+... .+++.+++...
T Consensus 39 ~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-i~~l~~~~~~~-------------- 103 (367)
T PRK14970 39 AQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD-IRNLIDQVRIP-------------- 103 (367)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH-HHHHHHHHhhc--------------
Confidence 3688899999999999999998875321 11211 11121111111111 11222221100
Q ss_pred HHHHcCCcEEEEEeCCCCcc--CccccCccCCCCCCCcEEEEEeC-ChhHHhh-hCCCceEEccCCCHHHHHHHHHHHhC
Q 039180 201 ERLKNEKKILLILDNTWKSL--DLGTIGIPFGVEHRGCKLLFTTR-DLDVLIR-MGSEKNFSIGILNEQEAWRLFKIIAG 276 (790)
Q Consensus 201 ~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR-~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~ 276 (790)
-. .+++-++|+|++.... .++.+...+......+.+|++|. ...+... ......++..+++.++....+...+.
T Consensus 104 -p~-~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~ 181 (367)
T PRK14970 104 -PQ-TGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAV 181 (367)
T ss_pred -cc-cCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHH
Confidence 00 1345689999986542 24444333322233455665553 3333322 33446899999999999988887665
Q ss_pred CCCCCcchHHHHHHHHHHhcCCcH
Q 039180 277 AYVENRELKSTATSVAKACRGLPI 300 (790)
Q Consensus 277 ~~~~~~~~~~~~~~i~~~~~glPl 300 (790)
..... -..+..+.+++.++|.+-
T Consensus 182 ~~g~~-i~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 182 KEGIK-FEDDALHIIAQKADGALR 204 (367)
T ss_pred HcCCC-CCHHHHHHHHHhCCCCHH
Confidence 32221 124677888888988655
No 153
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.31 E-value=0.0038 Score=73.03 Aligned_cols=154 Identities=15% Similarity=0.122 Sum_probs=90.0
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhcc----------------------CCCEEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDE----------------------LYDMVVFSEVTQSPDIKQIQQEIAEKLGLE 186 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~----------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 186 (790)
+.+.++|..|+||||+|+.++..+.-.. +++ +++++......+.++. ++.+.
T Consensus 38 Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d-v~eidaas~~~Vd~iR-~l~~~---- 111 (824)
T PRK07764 38 HAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD-VTEIDAASHGGVDDAR-ELRER---- 111 (824)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc-EEEecccccCCHHHHH-HHHHH----
Confidence 6688999999999999999988763211 122 2333322222222221 11111
Q ss_pred CchhHHHHHHHHHHHHHHcCCcEEEEEeCCCCc--cCccccCccCCCCCCCcEEEEEeCC-hhHHhh-hCCCceEEccCC
Q 039180 187 LSEEAEFRRASRMFERLKNEKKILLILDNTWKS--LDLGTIGIPFGVEHRGCKLLFTTRD-LDVLIR-MGSEKNFSIGIL 262 (790)
Q Consensus 187 ~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtR~-~~v~~~-~~~~~~~~l~~L 262 (790)
+...-..+++-++|||++... ...+.|...+-.-...+.+|++|.+ ..+... ......|.+..+
T Consensus 112 ------------~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l 179 (824)
T PRK07764 112 ------------AFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLV 179 (824)
T ss_pred ------------HHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCC
Confidence 111111245668999999766 3344454555444456666655543 444443 344578999999
Q ss_pred CHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHH
Q 039180 263 NEQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIA 301 (790)
Q Consensus 263 ~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla 301 (790)
+.++..+.+.+.+...... ...+....|++.++|.+..
T Consensus 180 ~~~~l~~~L~~il~~EGv~-id~eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 180 PPEVMRGYLERICAQEGVP-VEPGVLPLVIRAGGGSVRD 217 (824)
T ss_pred CHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHH
Confidence 9999988887765422221 1234567789999997743
No 154
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.30 E-value=0.0035 Score=69.80 Aligned_cols=154 Identities=12% Similarity=0.061 Sum_probs=91.5
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCCc
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEKK 208 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 208 (790)
..+.|+|..|+|||.|++++++.......-..+++++.. ++..++...+.. .......+++.+ -
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitae------ef~~el~~al~~--------~~~~~f~~~y~~--~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSE------EFTNEFINSIRD--------GKGDSFRRRYRE--M 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH------HHHHHHHHHHHh--------ccHHHHHHHhhc--C
Confidence 358999999999999999999986532222345666543 233333333221 112223344442 3
Q ss_pred EEEEEeCCCCcc---Ccc-ccCccCCC-CCCCcEEEEEeCCh---------hHHhhhCCCceEEccCCCHHHHHHHHHHH
Q 039180 209 ILLILDNTWKSL---DLG-TIGIPFGV-EHRGCKLLFTTRDL---------DVLIRMGSEKNFSIGILNEQEAWRLFKII 274 (790)
Q Consensus 209 ~LlVlDdv~~~~---~~~-~l~~~~~~-~~~gs~iliTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 274 (790)
=+|||||+.... .|. .+...+.. ...|..|||||+.. .+...+...-++++...+.+.-.+++++.
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence 478899997552 222 12222221 12355688888852 22233455678999999999999999988
Q ss_pred hCCCCCCcchHHHHHHHHHHhcCCc
Q 039180 275 AGAYVENRELKSTATSVAKACRGLP 299 (790)
Q Consensus 275 ~~~~~~~~~~~~~~~~i~~~~~glP 299 (790)
+..... .--+++++-|++.+.+..
T Consensus 459 a~~r~l-~l~~eVi~yLa~r~~rnv 482 (617)
T PRK14086 459 AVQEQL-NAPPEVLEFIASRISRNI 482 (617)
T ss_pred HHhcCC-CCCHHHHHHHHHhccCCH
Confidence 753221 222466677777766543
No 155
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.28 E-value=0.0052 Score=68.96 Aligned_cols=160 Identities=18% Similarity=0.164 Sum_probs=90.6
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhcc----------------------CCCEEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDE----------------------LYDMVVFSEVTQSPDIKQIQQEIAEKLGLE 186 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~----------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 186 (790)
+.+.++|+.|+||||+|+.++....-.. +.+ ++.++......+..+ ++|.
T Consensus 36 ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~d-vieidaas~~gvd~i-Rel~------ 107 (584)
T PRK14952 36 HAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSID-VVELDAASHGGVDDT-RELR------ 107 (584)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCce-EEEeccccccCHHHH-HHHH------
Confidence 5678999999999999999997753211 111 222322221122111 1111
Q ss_pred CchhHHHHHHHHHHHHHHcCCcEEEEEeCCCCc--cCccccCccCCCCCCCcEEEE-EeCChhHHhh-hCCCceEEccCC
Q 039180 187 LSEEAEFRRASRMFERLKNEKKILLILDNTWKS--LDLGTIGIPFGVEHRGCKLLF-TTRDLDVLIR-MGSEKNFSIGIL 262 (790)
Q Consensus 187 ~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ili-TtR~~~v~~~-~~~~~~~~l~~L 262 (790)
..+...-..+++-++|+|++... ...+.+...+-.......+|+ ||....+... ......+....+
T Consensus 108 ----------~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l 177 (584)
T PRK14952 108 ----------DRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLL 177 (584)
T ss_pred ----------HHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCC
Confidence 11111111245679999998654 334444444443344555555 5444544443 445678999999
Q ss_pred CHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcH-HHHHHHH
Q 039180 263 NEQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPI-ALTIVVK 307 (790)
Q Consensus 263 ~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~~~ 307 (790)
+.++..+.+.+.+...... ...+....|++..+|.+. ++..+-.
T Consensus 178 ~~~~i~~~L~~i~~~egi~-i~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 178 PPRTMRALIARICEQEGVV-VDDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred CHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999988887766432221 124566778889999774 4444433
No 156
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.25 E-value=0.00016 Score=69.69 Aligned_cols=168 Identities=18% Similarity=0.146 Sum_probs=96.4
Q ss_pred hhhhhccccceeeccCccccccchh----hhhccCcccEEeccCCCC---c-ccch-------hhhcccccceecCCccc
Q 039180 518 SSIYLLVNLQTLCLDQSILRDIDIA----IIGKLKNLKILSFVRSDI---V-QLPK-------ALGELTKLRLSDLTDCF 582 (790)
Q Consensus 518 ~~~~~l~~L~~L~L~~~~l~~l~p~----~i~~l~~L~~L~L~~~~l---~-~lp~-------~l~~l~~L~~L~l~~~~ 582 (790)
..+..+..+..++||+|.+...... .|.+-.+|+..+++.-.. . .+|. .+-+|++|+..++|.|.
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 3445577888899999987654233 344557788888776421 1 3333 35677888888888874
Q ss_pred cccccCc---hhhccccccceEecccCCccchhhcccccccc------cccccccCCCCCcEEEEEecCCCCCCcccc--
Q 039180 583 HLKVIAP---NVISSLTRLEELYMGNCPIEWEVERANSERSN------SSLDELMNLPWLTTLEIDVKNDSILPESFL-- 651 (790)
Q Consensus 583 ~l~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-- 651 (790)
.-...|+ ..+++-+.|.+|.+++|.+-... +. .-+ .......+-|.|+......|++...+....
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~a-G~---rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~ 179 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIA-GG---RIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAA 179 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCCccc-hh---HHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHH
Confidence 3333433 23566778888888888652111 00 001 011223345678887777777665554332
Q ss_pred ----ccccceeEEEecCCCCCCC------ccccCCccCeeeccceecc
Q 039180 652 ----TQKLERFKISIGNESFMPS------QSVELPNLEALELCAINVD 689 (790)
Q Consensus 652 ----~~~L~~L~l~~~~~~~~~~------~~~~l~~L~~L~l~~~~l~ 689 (790)
-.+|+.+++..|.+.+... ....+.+|+.|+|.+|-++
T Consensus 180 ~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 180 LLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred HHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 1356666666666543321 2234556666666666444
No 157
>PRK08118 topology modulation protein; Reviewed
Probab=97.24 E-value=0.00018 Score=67.42 Aligned_cols=35 Identities=26% Similarity=0.424 Sum_probs=29.0
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhc-cCCCEEEE
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIED-ELYDMVVF 163 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~w 163 (790)
+.|.|+|++|+||||+|+.+++..... -+||.++|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 458999999999999999999987544 45777776
No 158
>PTZ00202 tuzin; Provisional
Probab=97.24 E-value=0.0092 Score=62.85 Aligned_cols=141 Identities=15% Similarity=0.188 Sum_probs=82.4
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchh--HHHHHH-HHHHHH
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEE--AEFRRA-SRMFER 202 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~-~~l~~~ 202 (790)
...+++.|+|++|+|||||++.+..... + ....++.. +..++++.++.+||.+.... +-...+ +.+.+.
T Consensus 284 ~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eElLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~ 355 (550)
T PTZ00202 284 AHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTEDTLRSVVKALGVPNVEACGDLLDFISEACRRA 355 (550)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHH
Confidence 3456999999999999999999986542 1 12223222 77999999999999743322 112222 233333
Q ss_pred HHc-CCcEEEEEeCCC--Ccc-CccccCccCCCCCCCcEEEEEeCChhHHhh---hCCCceEEccCCCHHHHHHHHHHHh
Q 039180 203 LKN-EKKILLILDNTW--KSL-DLGTIGIPFGVEHRGCKLLFTTRDLDVLIR---MGSEKNFSIGILNEQEAWRLFKIIA 275 (790)
Q Consensus 203 l~~-~kr~LlVlDdv~--~~~-~~~~l~~~~~~~~~gs~iliTtR~~~v~~~---~~~~~~~~l~~L~~~~~~~Lf~~~~ 275 (790)
... |++.+||+-=-+ +.. ...+. ..+.....-|.|++----+...-. ...-..|.+..++.++|.+..++..
T Consensus 356 ~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 356 KKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred HHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 333 677777764221 110 11111 122223345667775554432222 2233578899999999988877654
No 159
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.24 E-value=0.00086 Score=64.44 Aligned_cols=30 Identities=27% Similarity=0.272 Sum_probs=21.5
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhhc
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIED 155 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~ 155 (790)
...+.+.|+|.+|+|||+++++++......
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 456899999999999999999999988766
No 160
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.24 E-value=0.0055 Score=66.98 Aligned_cols=152 Identities=13% Similarity=0.114 Sum_probs=88.0
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
..-+.|+|+.|+|||+|++++++..... ...+++++. ..+...+...+... ........+. .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~~------~~f~~~~~~~l~~~--------~~~~f~~~~~--~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVRS------ELFTEHLVSAIRSG--------EMQRFRQFYR--N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEeeH------HHHHHHHHHHHhcc--------hHHHHHHHcc--c
Confidence 4568899999999999999999987543 233556553 23334444443211 1122222332 3
Q ss_pred cEEEEEeCCCCccCc----cccCccCCC-CCCCcEEEEEeCCh---------hHHhhhCCCceEEccCCCHHHHHHHHHH
Q 039180 208 KILLILDNTWKSLDL----GTIGIPFGV-EHRGCKLLFTTRDL---------DVLIRMGSEKNFSIGILNEQEAWRLFKI 273 (790)
Q Consensus 208 r~LlVlDdv~~~~~~----~~l~~~~~~-~~~gs~iliTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~ 273 (790)
.-+|++||+...... +.+...+.. ...|..||+||... .+...+.....+.+.+++.++..+++++
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 358889998654221 122222211 12355688888642 1222244446899999999999999988
Q ss_pred HhCCCCCCcchHHHHHHHHHHhcCC
Q 039180 274 IAGAYVENRELKSTATSVAKACRGL 298 (790)
Q Consensus 274 ~~~~~~~~~~~~~~~~~i~~~~~gl 298 (790)
.+.... ..-.+++..-|++.+.|.
T Consensus 283 k~~~~~-~~l~~evl~~la~~~~~d 306 (445)
T PRK12422 283 KAEALS-IRIEETALDFLIEALSSN 306 (445)
T ss_pred HHHHcC-CCCCHHHHHHHHHhcCCC
Confidence 775322 122245566677766653
No 161
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.24 E-value=0.0058 Score=69.13 Aligned_cols=171 Identities=14% Similarity=0.138 Sum_probs=89.8
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEE-eCCCCCHHHHHHHHHHHhCCCC-----chhHHHHHHHHHHHH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSE-VTQSPDIKQIQQEIAEKLGLEL-----SEEAEFRRASRMFER 202 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~l~~~ 202 (790)
+.+.++|+.|+||||+|+.++...--...++...|.. +......-...+.+...-..+. ......+.+..+.+.
T Consensus 39 ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~ 118 (620)
T PRK14954 39 HGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLREN 118 (620)
T ss_pred eeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHH
Confidence 5688999999999999999998763321111001110 0001111111111111100000 000001222233333
Q ss_pred H----HcCCcEEEEEeCCCCcc--CccccCccCCCCCCCcEEEEEe-CChhHHhh-hCCCceEEccCCCHHHHHHHHHHH
Q 039180 203 L----KNEKKILLILDNTWKSL--DLGTIGIPFGVEHRGCKLLFTT-RDLDVLIR-MGSEKNFSIGILNEQEAWRLFKII 274 (790)
Q Consensus 203 l----~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTt-R~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~ 274 (790)
+ ..+.+-++|+|+++... ..+.+...+-.....+.+|++| +...+... ......+++.+++.++....+.+.
T Consensus 119 ~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i 198 (620)
T PRK14954 119 VRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMI 198 (620)
T ss_pred HHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHH
Confidence 3 12456689999987653 3444444443333455555544 44444433 455679999999999988888776
Q ss_pred hCCCCCCcchHHHHHHHHHHhcCCcH
Q 039180 275 AGAYVENRELKSTATSVAKACRGLPI 300 (790)
Q Consensus 275 ~~~~~~~~~~~~~~~~i~~~~~glPl 300 (790)
+..... .-..+.++.|++.++|..-
T Consensus 199 ~~~egi-~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 199 CRAEGI-QIDADALQLIARKAQGSMR 223 (620)
T ss_pred HHHcCC-CCCHHHHHHHHHHhCCCHH
Confidence 642211 1224567889999999554
No 162
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.24 E-value=0.0047 Score=59.52 Aligned_cols=183 Identities=20% Similarity=0.269 Sum_probs=107.6
Q ss_pred CChHHHHHHhHHHHHHHHHH-HHHHHhhcccCCcccccceecCCceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEE
Q 039180 84 PDWFARYQHGRKAETEKEAL-SKLREEAERFDNRISYPTIREDIWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVV 162 (790)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~ 162 (790)
+++....-++.+-.+.+.++ .+-.+.-++|+ +-..+-|..+|++|.|||.+|+++++..++. | +
T Consensus 116 ~~it~ddViGqEeAK~kcrli~~yLenPe~Fg----------~WAPknVLFyGppGTGKTm~Akalane~kvp--~---l 180 (368)
T COG1223 116 SDITLDDVIGQEEAKRKCRLIMEYLENPERFG----------DWAPKNVLFYGPPGTGKTMMAKALANEAKVP--L---L 180 (368)
T ss_pred ccccHhhhhchHHHHHHHHHHHHHhhChHHhc----------ccCcceeEEECCCCccHHHHHHHHhcccCCc--e---E
Confidence 44556666777777766664 55556777776 4557889999999999999999999887543 2 1
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCCcEEEEEeCCCCc----------cC----ccccCcc
Q 039180 163 FSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEKKILLILDNTWKS----------LD----LGTIGIP 228 (790)
Q Consensus 163 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~----------~~----~~~l~~~ 228 (790)
-| . ..+-|-+..| +....+.++.++-.+.-++++.+|.++.. .+ ..++...
T Consensus 181 ~v--k-------at~liGehVG------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTe 245 (368)
T COG1223 181 LV--K-------ATELIGEHVG------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTE 245 (368)
T ss_pred Ee--c-------hHHHHHHHhh------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHh
Confidence 11 1 1122222222 23345677777777667899999998654 11 1122111
Q ss_pred CCC--CCCCcEEEEEeCChhHHhh-h--CCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCC
Q 039180 229 FGV--EHRGCKLLFTTRDLDVLIR-M--GSEKNFSIGILNEQEAWRLFKIIAGAYVENRELKSTATSVAKACRGL 298 (790)
Q Consensus 229 ~~~--~~~gs~iliTtR~~~v~~~-~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 298 (790)
+.. .+.|-.-|-.|...+..+. + .-.+-++..--+.+|-..++...+.....+- +...+.++++.+|+
T Consensus 246 lDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv--~~~~~~~~~~t~g~ 318 (368)
T COG1223 246 LDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPV--DADLRYLAAKTKGM 318 (368)
T ss_pred ccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcc--ccCHHHHHHHhCCC
Confidence 111 2345555555555444443 1 2224566666678888888888775322211 11244556666654
No 163
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.23 E-value=0.0017 Score=64.34 Aligned_cols=160 Identities=17% Similarity=0.191 Sum_probs=97.1
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCE-EEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH-
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDM-VVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLK- 204 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~- 204 (790)
..+....+|++|.|||+-|..++...-..+.|.+ +.-.++|......-+...+-. ............
T Consensus 56 ~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~-----------fakl~~~~~~~~~ 124 (346)
T KOG0989|consen 56 ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKN-----------FAKLTVLLKRSDG 124 (346)
T ss_pred CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcC-----------HHHHhhccccccC
Confidence 4688899999999999999999988765555654 334455554332211111100 000000000000
Q ss_pred -cCCc-EEEEEeCCCCc--cCccccCccCCCCCCCcEEEEEeCC-hhHHhh-hCCCceEEccCCCHHHHHHHHHHHhCCC
Q 039180 205 -NEKK-ILLILDNTWKS--LDLGTIGIPFGVEHRGCKLLFTTRD-LDVLIR-MGSEKNFSIGILNEQEAWRLFKIIAGAY 278 (790)
Q Consensus 205 -~~kr-~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~ 278 (790)
.-++ -.+|||+++.. +.|.++...+-.....++.++.|.+ ..+... ....+.+...+|..++...-++..+..+
T Consensus 125 ~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E 204 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKE 204 (346)
T ss_pred CCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHh
Confidence 0122 58899999876 5788887776665666675544444 333333 3445688899999999998888877533
Q ss_pred CCCcchHHHHHHHHHHhcCC
Q 039180 279 VENRELKSTATSVAKACRGL 298 (790)
Q Consensus 279 ~~~~~~~~~~~~i~~~~~gl 298 (790)
...- ..+..+.|++.++|-
T Consensus 205 ~v~~-d~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 205 GVDI-DDDALKLIAKISDGD 223 (346)
T ss_pred CCCC-CHHHHHHHHHHcCCc
Confidence 3222 245678899988884
No 164
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.23 E-value=0.014 Score=62.11 Aligned_cols=89 Identities=16% Similarity=0.160 Sum_probs=54.6
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhc--cCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIED--ELYDMVVFSEVTQSP-DIKQIQQEIAEKLGLELSEEAEFRRASRMFERL 203 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~--~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l 203 (790)
..++|.++|+.|+||||.+..++...... .+-..+.-+++.... ....-++..++.++.+.........+......+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 45799999999999999999998876532 122346666665432 222335666666766543332333334444444
Q ss_pred HcCCcEEEEEeCCC
Q 039180 204 KNEKKILLILDNTW 217 (790)
Q Consensus 204 ~~~kr~LlVlDdv~ 217 (790)
. ..-++++|..-
T Consensus 253 ~--~~DlVLIDTaG 264 (388)
T PRK12723 253 K--DFDLVLVDTIG 264 (388)
T ss_pred C--CCCEEEEcCCC
Confidence 2 34688888873
No 165
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.011 Score=62.91 Aligned_cols=148 Identities=24% Similarity=0.299 Sum_probs=88.9
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcC
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNE 206 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 206 (790)
...-+.+.|++|+|||+||..++..- .|..+--++..+-. |. .+...-..+..+++.-...
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S----~FPFvKiiSpe~mi-------------G~--sEsaKc~~i~k~F~DAYkS 597 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSS----DFPFVKIISPEDMI-------------GL--SESAKCAHIKKIFEDAYKS 597 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhc----CCCeEEEeChHHcc-------------Cc--cHHHHHHHHHHHHHHhhcC
Confidence 36668899999999999999998753 36654433322111 11 1112222334444433334
Q ss_pred CcEEEEEeCCCCccCccccCccCCC-------------CCCCcEEEE--EeCChhHHhhhCC----CceEEccCCCH-HH
Q 039180 207 KKILLILDNTWKSLDLGTIGIPFGV-------------EHRGCKLLF--TTRDLDVLIRMGS----EKNFSIGILNE-QE 266 (790)
Q Consensus 207 kr~LlVlDdv~~~~~~~~l~~~~~~-------------~~~gs~ili--TtR~~~v~~~~~~----~~~~~l~~L~~-~~ 266 (790)
.=-.||+||+...-+|..++..+.. ..+|-|.+| ||....+...|+- ...|+++.++. ++
T Consensus 598 ~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~ 677 (744)
T KOG0741|consen 598 PLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQ 677 (744)
T ss_pred cceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHH
Confidence 5679999999988888776655432 134555443 6666778877653 34788998886 77
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHHh
Q 039180 267 AWRLFKIIAGAYVENRELKSTATSVAKAC 295 (790)
Q Consensus 267 ~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~ 295 (790)
..+.++.... -.+...+.++++...+|
T Consensus 678 ~~~vl~~~n~--fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 678 LLEVLEELNI--FSDDEVRAIAEQLLSKK 704 (744)
T ss_pred HHHHHHHccC--CCcchhHHHHHHHhccc
Confidence 7777765431 12233444555555555
No 166
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.20 E-value=0.0029 Score=68.42 Aligned_cols=150 Identities=14% Similarity=0.163 Sum_probs=82.2
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
.+-|.++|++|+|||++|+.+++.... .| +.+..+. + ..... . .....+..+++....+.
T Consensus 217 p~gVLL~GPPGTGKT~LAraIA~el~~--~f---i~V~~se------L----~~k~~----G-e~~~~vr~lF~~A~~~~ 276 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKAVANETSA--TF---LRVVGSE------L----IQKYL----G-DGPKLVRELFRVAEENA 276 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCC--CE---EEEecch------h----hhhhc----c-hHHHHHHHHHHHHHhCC
Confidence 345789999999999999999987632 23 2222111 1 11110 0 01122444555444557
Q ss_pred cEEEEEeCCCCccC----------------ccccCccCC--CCCCCcEEEEEeCChhHHhh-h----CCCceEEccCCCH
Q 039180 208 KILLILDNTWKSLD----------------LGTIGIPFG--VEHRGCKLLFTTRDLDVLIR-M----GSEKNFSIGILNE 264 (790)
Q Consensus 208 r~LlVlDdv~~~~~----------------~~~l~~~~~--~~~~gs~iliTtR~~~v~~~-~----~~~~~~~l~~L~~ 264 (790)
+.+|+||+++.... ...+...+. ....+.+||.||...+.... + .....+.+...+.
T Consensus 277 P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~ 356 (438)
T PTZ00361 277 PSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDE 356 (438)
T ss_pred CcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCH
Confidence 78999999754310 000000110 11235578888876544433 2 1235789999999
Q ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCc
Q 039180 265 QEAWRLFKIIAGAYVENRELKSTATSVAKACRGLP 299 (790)
Q Consensus 265 ~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 299 (790)
++..++|..+........+. ....++..+.|+-
T Consensus 357 ~~R~~Il~~~~~k~~l~~dv--dl~~la~~t~g~s 389 (438)
T PTZ00361 357 KTKRRIFEIHTSKMTLAEDV--DLEEFIMAKDELS 389 (438)
T ss_pred HHHHHHHHHHHhcCCCCcCc--CHHHHHHhcCCCC
Confidence 99999999877533222211 1344555555533
No 167
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.20 E-value=0.024 Score=61.82 Aligned_cols=59 Identities=19% Similarity=0.200 Sum_probs=38.3
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQS-PDIKQIQQEIAEKLGLE 186 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~ 186 (790)
-+|++++|+.|+||||++..++.....+.....+..+..... ....+-++...+.++..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVp 315 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVP 315 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCC
Confidence 379999999999999999999987644322234556655431 23334445555665554
No 168
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.19 E-value=0.0067 Score=66.55 Aligned_cols=158 Identities=16% Similarity=0.175 Sum_probs=88.2
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhc---------------------cCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIED---------------------ELYDMVVFSEVTQSPDIKQIQQEIAEKLGLEL 187 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~---------------------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 187 (790)
+.+.++|+.|+||||+|+.++...-.. .+++ ++++.........++. ++.+.+.
T Consensus 40 ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~i~g~~~~gid~ir-~i~~~l~--- 114 (451)
T PRK06305 40 HAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLEIDGASHRGIEDIR-QINETVL--- 114 (451)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEEeeccccCCHHHHH-HHHHHHH---
Confidence 668899999999999999998875321 1122 2222211111111111 1111110
Q ss_pred chhHHHHHHHHHHHHHHcCCcEEEEEeCCCCcc--CccccCccCCCCCCCcEEEEEeCC-hhHHhh-hCCCceEEccCCC
Q 039180 188 SEEAEFRRASRMFERLKNEKKILLILDNTWKSL--DLGTIGIPFGVEHRGCKLLFTTRD-LDVLIR-MGSEKNFSIGILN 263 (790)
Q Consensus 188 ~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR~-~~v~~~-~~~~~~~~l~~L~ 263 (790)
-.-..+++-++|+|++.... ..+.+...+-.......+|++|.. ..+... ......+++.+++
T Consensus 115 -------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~ 181 (451)
T PRK06305 115 -------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIP 181 (451)
T ss_pred -------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCC
Confidence 00012456789999986542 233343344333345566666643 333332 3445689999999
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcH-HHHHH
Q 039180 264 EQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPI-ALTIV 305 (790)
Q Consensus 264 ~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~ 305 (790)
+++..+.+.+.+..... .-..+.++.|++.++|.+. |+..+
T Consensus 182 ~~el~~~L~~~~~~eg~-~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 182 EETIIDKLALIAKQEGI-ETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred HHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99998888876642221 1224567889999998664 43333
No 169
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.19 E-value=0.00094 Score=65.46 Aligned_cols=35 Identities=26% Similarity=0.352 Sum_probs=28.8
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEe
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEV 166 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~ 166 (790)
.++|+|..|+||||++..+..... ..|..+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~--~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLR--HKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhc--ccCCEEEEEec
Confidence 578999999999999999988764 35888877754
No 170
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.19 E-value=0.00063 Score=72.53 Aligned_cols=89 Identities=20% Similarity=0.211 Sum_probs=57.3
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH--c
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLK--N 205 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~--~ 205 (790)
.+.|.++|++|+|||++|+++++.......|+.+.||.+++..+..+....+.-. +..... ......+..+... .
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~vgy~~--~~G~f~~~~~~A~~~p 270 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GVGFRR--KDGIFYNFCQQAKEQP 270 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-CCCeEe--cCchHHHHHHHHHhcc
Confidence 4567889999999999999999988766678889999999888866654322110 100000 0011112222222 1
Q ss_pred CCcEEEEEeCCCCc
Q 039180 206 EKKILLILDNTWKS 219 (790)
Q Consensus 206 ~kr~LlVlDdv~~~ 219 (790)
++++++|+|++.-.
T Consensus 271 ~~~~vliIDEINRa 284 (459)
T PRK11331 271 EKKYVFIIDEINRA 284 (459)
T ss_pred cCCcEEEEehhhcc
Confidence 36799999998644
No 171
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=4.9e-05 Score=73.45 Aligned_cols=81 Identities=26% Similarity=0.335 Sum_probs=40.1
Q ss_pred ccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceecCCccccccccCc-hhhccccccceE
Q 039180 523 LVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSDLTDCFHLKVIAP-NVISSLTRLEEL 601 (790)
Q Consensus 523 l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L 601 (790)
+.+.+.|++.+|.+++ .+...+|+.|+.|.|+-|+|+.+-+ +..|++|++|+|..| .+..+.. ..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~D--Isic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD--ISICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccH--HHHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhH
Confidence 3344455555555554 3344455555555555555555432 455555555555554 3333221 123455555555
Q ss_pred ecccCC
Q 039180 602 YMGNCP 607 (790)
Q Consensus 602 ~l~~~~ 607 (790)
+|..|.
T Consensus 94 WL~ENP 99 (388)
T KOG2123|consen 94 WLDENP 99 (388)
T ss_pred hhccCC
Confidence 555544
No 172
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.18 E-value=0.0026 Score=66.38 Aligned_cols=89 Identities=11% Similarity=0.162 Sum_probs=60.9
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCE-EEEEEeCC-CCCHHHHHHHHHHHhCCCCchhHHH------HHHHHHH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDM-VVFSEVTQ-SPDIKQIQQEIAEKLGLELSEEAEF------RRASRMF 200 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~-~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~------~~~~~l~ 200 (790)
.-+.|+|..|+|||||++.+++..... +-+. ++|+.+.+ ...+.++.+.+...+.....+.+.. ..+..+.
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~A 212 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERA 212 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHH
Confidence 356999999999999999999876543 3344 46777765 5678888888888776543222111 1233444
Q ss_pred HHHH-cCCcEEEEEeCCCC
Q 039180 201 ERLK-NEKKILLILDNTWK 218 (790)
Q Consensus 201 ~~l~-~~kr~LlVlDdv~~ 218 (790)
+.+. +|++++||+|++..
T Consensus 213 e~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 213 KRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHcCCCEEEEEeCcHH
Confidence 4443 58999999999853
No 173
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.17 E-value=0.0033 Score=69.05 Aligned_cols=137 Identities=15% Similarity=0.159 Sum_probs=75.6
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccC---CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHH--
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDEL---YDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFER-- 202 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~---f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~-- 202 (790)
.+-+.++|++|+|||++|+.+++....... .....++++.... ++... ..+ ....+..+++.
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e--------Ll~ky----vGe-te~~ir~iF~~Ar 282 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE--------LLNKY----VGE-TERQIRLIFQRAR 282 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh--------hcccc----cch-HHHHHHHHHHHHH
Confidence 455899999999999999999998643211 1224455444311 11110 001 11122223222
Q ss_pred --HHcCCcEEEEEeCCCCccC---------c-----cccCccCCC--CCCCcEEEEEeCChhHHhh-h----CCCceEEc
Q 039180 203 --LKNEKKILLILDNTWKSLD---------L-----GTIGIPFGV--EHRGCKLLFTTRDLDVLIR-M----GSEKNFSI 259 (790)
Q Consensus 203 --l~~~kr~LlVlDdv~~~~~---------~-----~~l~~~~~~--~~~gs~iliTtR~~~v~~~-~----~~~~~~~l 259 (790)
...+++++|+||+++.... . ..+...+.. ...+..||.||...+..+. + .-+..+++
T Consensus 283 ~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~ 362 (512)
T TIGR03689 283 EKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRI 362 (512)
T ss_pred HHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEe
Confidence 2335789999999975410 0 111111211 1123445666655433332 1 22347999
Q ss_pred cCCCHHHHHHHHHHHhCC
Q 039180 260 GILNEQEAWRLFKIIAGA 277 (790)
Q Consensus 260 ~~L~~~~~~~Lf~~~~~~ 277 (790)
+..+.++..++|.++...
T Consensus 363 ~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 363 ERPDAEAAADIFSKYLTD 380 (512)
T ss_pred CCCCHHHHHHHHHHHhhc
Confidence 999999999999998753
No 174
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.16 E-value=0.01 Score=64.68 Aligned_cols=89 Identities=20% Similarity=0.285 Sum_probs=51.4
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHc
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSP-DIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKN 205 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 205 (790)
.-++|+|+|.+|+||||++..++.....+.....+..++..... ...+.++...+.++.......+...+...++.+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~- 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR- 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc-
Confidence 35899999999999999999988776443223345556554321 2223333334444443332222333444555554
Q ss_pred CCcEEEEEeCCC
Q 039180 206 EKKILLILDNTW 217 (790)
Q Consensus 206 ~kr~LlVlDdv~ 217 (790)
..=+||+|..-
T Consensus 428 -~~DLVLIDTaG 438 (559)
T PRK12727 428 -DYKLVLIDTAG 438 (559)
T ss_pred -cCCEEEecCCC
Confidence 24578888863
No 175
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.14 E-value=0.011 Score=60.68 Aligned_cols=88 Identities=20% Similarity=0.312 Sum_probs=50.7
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHc
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSP-DIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKN 205 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 205 (790)
..++++++|++|+||||++..++.....+..-..+..|+..... ...+.+....+.++.+.........+....+.+.+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~~ 272 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLRD 272 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHccC
Confidence 46799999999999999999998877543111346666655422 22333344445555443222222234444455532
Q ss_pred CCcEEEEEeCC
Q 039180 206 EKKILLILDNT 216 (790)
Q Consensus 206 ~kr~LlVlDdv 216 (790)
.=+|++|..
T Consensus 273 --~d~vliDt~ 281 (282)
T TIGR03499 273 --KDLILIDTA 281 (282)
T ss_pred --CCEEEEeCC
Confidence 347777753
No 176
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.12 E-value=0.0099 Score=67.66 Aligned_cols=171 Identities=13% Similarity=0.082 Sum_probs=90.6
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCC-----chhHHHHHHHHHHHHH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLEL-----SEEAEFRRASRMFERL 203 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~l~~~l 203 (790)
+-+.++|+.|+||||+|+.++...--...... . ......-...+.+......+. ......+.+..+.+..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-~----~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a 113 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-T----PEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERA 113 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-C----CCCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHH
Confidence 56789999999999999999988642211100 0 001111122222222111100 0001112222333322
Q ss_pred H----cCCcEEEEEeCCCCc--cCccccCccCCCCCCCcEEEEEeCC-hhHHhh-hCCCceEEccCCCHHHHHHHHHHHh
Q 039180 204 K----NEKKILLILDNTWKS--LDLGTIGIPFGVEHRGCKLLFTTRD-LDVLIR-MGSEKNFSIGILNEQEAWRLFKIIA 275 (790)
Q Consensus 204 ~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~ 275 (790)
. .+++-++|+|++... ...+.+...+-.......+|++|.+ ..+... ......+.+..++.++....+.+.+
T Consensus 114 ~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia 193 (620)
T PRK14948 114 QFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIA 193 (620)
T ss_pred hhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHH
Confidence 2 245678999999765 2344444444333334555544443 444333 3445688888999999888777766
Q ss_pred CCCCCCcchHHHHHHHHHHhcCCcHHHHHH
Q 039180 276 GAYVENRELKSTATSVAKACRGLPIALTIV 305 (790)
Q Consensus 276 ~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 305 (790)
...... -..+.+..|++.++|.+..+...
T Consensus 194 ~kegi~-is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 194 EKESIE-IEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHhCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 432211 12355788999999987654433
No 177
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.12 E-value=0.01 Score=64.44 Aligned_cols=87 Identities=16% Similarity=0.205 Sum_probs=49.4
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCC-HHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPD-IKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNE 206 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 206 (790)
-++++++|++|+||||++..++........-..+..|+...... ..+-++...+.++.+.........+...++.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~-- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR-- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC--
Confidence 46999999999999999999887765111234566777654321 222333444555554322222222333333443
Q ss_pred CcEEEEEeCC
Q 039180 207 KKILLILDNT 216 (790)
Q Consensus 207 kr~LlVlDdv 216 (790)
..=+||+|..
T Consensus 299 ~~DlVlIDt~ 308 (424)
T PRK05703 299 DCDVILIDTA 308 (424)
T ss_pred CCCEEEEeCC
Confidence 2457888875
No 178
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.11 E-value=0.0096 Score=67.21 Aligned_cols=151 Identities=15% Similarity=0.132 Sum_probs=87.2
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhcc--------------------CCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCc
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDE--------------------LYDMVVFSEVTQSPDIKQIQQEIAEKLGLELS 188 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~--------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 188 (790)
+.+.++|+.|+||||+|+.++...-... +++ ++.+.......+
T Consensus 39 hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~d-v~eidaas~~~v---------------- 101 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMD-VIEIDAASNNGV---------------- 101 (559)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCC-eEEeeccccCCH----------------
Confidence 6677899999999999999987653211 122 222222211111
Q ss_pred hhHHHHHHHHHHHHHH----cCCcEEEEEeCCCCc--cCccccCccCCCCCCCcEEEE-EeCChhHHhh-hCCCceEEcc
Q 039180 189 EEAEFRRASRMFERLK----NEKKILLILDNTWKS--LDLGTIGIPFGVEHRGCKLLF-TTRDLDVLIR-MGSEKNFSIG 260 (790)
Q Consensus 189 ~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ili-TtR~~~v~~~-~~~~~~~~l~ 260 (790)
+.+..+.+... .+++-++|+|++... ..+..+...+-.......+|+ ||....+... ......+...
T Consensus 102 -----d~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~ 176 (559)
T PRK05563 102 -----DEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFK 176 (559)
T ss_pred -----HHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecC
Confidence 12222222221 346678899999755 234444444433333444444 4444444333 3445688899
Q ss_pred CCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHHH
Q 039180 261 ILNEQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIAL 302 (790)
Q Consensus 261 ~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 302 (790)
+++.++..+.+...+......- ..+....|++.++|.+..+
T Consensus 177 ~~~~~ei~~~L~~i~~~egi~i-~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 177 RISVEDIVERLKYILDKEGIEY-EDEALRLIARAAEGGMRDA 217 (559)
T ss_pred CCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 9999999888887764322211 2456778888888877543
No 179
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.11 E-value=0.0038 Score=67.39 Aligned_cols=150 Identities=18% Similarity=0.208 Sum_probs=83.4
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcC
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNE 206 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 206 (790)
..+-|.++|++|+|||++|+.+++.... . |+.++. . ++...... .....+..+++.....
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~~--~-----~i~v~~----~----~l~~~~~g-----~~~~~i~~~f~~a~~~ 223 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETNA--T-----FIRVVG----S----ELVQKFIG-----EGARLVRELFELAREK 223 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhCC--C-----EEEeeh----H----HHhHhhcc-----chHHHHHHHHHHHHhc
Confidence 3456899999999999999999987532 1 222211 1 11111100 0122334455554445
Q ss_pred CcEEEEEeCCCCccC-------------ccccCcc---CCC--CCCCcEEEEEeCChhHHhh-h----CCCceEEccCCC
Q 039180 207 KKILLILDNTWKSLD-------------LGTIGIP---FGV--EHRGCKLLFTTRDLDVLIR-M----GSEKNFSIGILN 263 (790)
Q Consensus 207 kr~LlVlDdv~~~~~-------------~~~l~~~---~~~--~~~gs~iliTtR~~~v~~~-~----~~~~~~~l~~L~ 263 (790)
.+.+|+|||++.... ...+... +.. ...+.+||.||...+.... + .-...+.+...+
T Consensus 224 ~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~ 303 (389)
T PRK03992 224 APSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPD 303 (389)
T ss_pred CCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCC
Confidence 678999999976410 0011111 111 1234567777775432222 1 123579999999
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCC
Q 039180 264 EQEAWRLFKIIAGAYVENRELKSTATSVAKACRGL 298 (790)
Q Consensus 264 ~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 298 (790)
.++..++|+.+.......... ....+++.+.|.
T Consensus 304 ~~~R~~Il~~~~~~~~~~~~~--~~~~la~~t~g~ 336 (389)
T PRK03992 304 EEGRLEILKIHTRKMNLADDV--DLEELAELTEGA 336 (389)
T ss_pred HHHHHHHHHHHhccCCCCCcC--CHHHHHHHcCCC
Confidence 999999999887533222211 134566666664
No 180
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.11 E-value=0.0061 Score=67.06 Aligned_cols=152 Identities=16% Similarity=0.160 Sum_probs=82.0
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
.+-|.++|++|+|||.+|+.++...... | +-++.+. +.. ....+ ....+..+++......
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~~~~--~---~~l~~~~----------l~~----~~vGe-se~~l~~~f~~A~~~~ 318 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDWQLP--L---LRLDVGK----------LFG----GIVGE-SESRMRQMIRIAEALS 318 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCC--E---EEEEhHH----------hcc----cccCh-HHHHHHHHHHHHHhcC
Confidence 4568899999999999999999876322 2 2222221 111 11111 1223444555444457
Q ss_pred cEEEEEeCCCCccC----cc----------ccCccCCCCCCCcEEEEEeCChhHHh-hh----CCCceEEccCCCHHHHH
Q 039180 208 KILLILDNTWKSLD----LG----------TIGIPFGVEHRGCKLLFTTRDLDVLI-RM----GSEKNFSIGILNEQEAW 268 (790)
Q Consensus 208 r~LlVlDdv~~~~~----~~----------~l~~~~~~~~~gs~iliTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~ 268 (790)
+++|++|+++.... .. .+...+.....+--||.||...+... .+ .-+..+.++.-+.++-.
T Consensus 319 P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~ 398 (489)
T CHL00195 319 PCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEERE 398 (489)
T ss_pred CcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHH
Confidence 89999999975311 00 00011111122333555776543222 21 23457888888999999
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHHhcCCc
Q 039180 269 RLFKIIAGAYVENRELKSTATSVAKACRGLP 299 (790)
Q Consensus 269 ~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 299 (790)
++|+.+................+++.+.|.-
T Consensus 399 ~Il~~~l~~~~~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 399 KIFKIHLQKFRPKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred HHHHHHHhhcCCCcccccCHHHHHhhcCCCC
Confidence 9998877532211111122455666666644
No 181
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.06 E-value=0.00012 Score=82.44 Aligned_cols=241 Identities=21% Similarity=0.190 Sum_probs=145.1
Q ss_pred ccccceeecccCCCCCCCCCChhhhccCCceEEEEecCc-cc-cC----CChhhhhccccceeeccCcc-ccccchhhhh
Q 039180 473 SAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKM-LL-SS----LPSSIYLLVNLQTLCLDQSI-LRDIDIAIIG 545 (790)
Q Consensus 473 ~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~-~~-~~----lp~~~~~l~~L~~L~L~~~~-l~~l~p~~i~ 545 (790)
.+.++.+.+.+........+ ..+...++.|+.|+++++ .. .. .+.....+.+|+.|+++++. ++......+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSL-DALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred CchhhHhhhcccccCChhhH-HHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 56666666665554441111 234578999999999973 21 11 12344567899999999998 7665455555
Q ss_pred c-cCcccEEeccCCC-Cc--ccchhhhcccccceecCCcccccccc-CchhhccccccceEecccCCccchhhccccccc
Q 039180 546 K-LKNLKILSFVRSD-IV--QLPKALGELTKLRLSDLTDCFHLKVI-APNVISSLTRLEELYMGNCPIEWEVERANSERS 620 (790)
Q Consensus 546 ~-l~~L~~L~L~~~~-l~--~lp~~l~~l~~L~~L~l~~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 620 (790)
. +++|++|.+.+|. ++ .+-.....++.|++|++++|..++.. -.....++++|+.|.+....
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~------------- 332 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN------------- 332 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC-------------
Confidence 4 8999999988885 65 55555677899999999999766431 11224457777776654332
Q ss_pred ccccccccCCCCCcEEEEEecCCC---CCCc--cccccccceeEEEecCCCCCC--CccccCCccCeeeccceecceecc
Q 039180 621 NSSLDELMNLPWLTTLEIDVKNDS---ILPE--SFLTQKLERFKISIGNESFMP--SQSVELPNLEALELCAINVDKIWH 693 (790)
Q Consensus 621 ~~~~~~l~~l~~L~~L~l~~~~~~---~~~~--~~~~~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~l~~ 693 (790)
.++.++.+.+.+.... .... ...+++++.+.+..+...... .....+++|. ..+..+
T Consensus 333 --------~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~------- 396 (482)
T KOG1947|consen 333 --------GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR------- 396 (482)
T ss_pred --------CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH-------
Confidence 1333444433322210 1111 113778888887776633322 1334444442 222221
Q ss_pred cCCCccccccCCCccEEeeccCCcccccchhHHHhccccccEEeeccCchhhhHhhc
Q 039180 694 YNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFELLRELSIADCRGLREIISK 750 (790)
Q Consensus 694 ~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 750 (790)
...+..++.|+++.|...+..........+..++.+.+.+|+.+......
T Consensus 397 -------~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 446 (482)
T KOG1947|consen 397 -------LCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSLE 446 (482)
T ss_pred -------hccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhhh
Confidence 22234499999999987776532221222788999999999887766543
No 182
>PRK08116 hypothetical protein; Validated
Probab=97.05 E-value=0.0015 Score=66.39 Aligned_cols=100 Identities=23% Similarity=0.224 Sum_probs=58.8
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCCcE
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEKKI 209 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~ 209 (790)
-+.++|..|+|||.||.++++....+ ...++++++ .+++..+......... .....+.+.+.+ -.
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~~------~~ll~~i~~~~~~~~~-----~~~~~~~~~l~~-~d- 180 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVNF------PQLLNRIKSTYKSSGK-----EDENEIIRSLVN-AD- 180 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEH------HHHHHHHHHHHhcccc-----ccHHHHHHHhcC-CC-
Confidence 48899999999999999999997644 344666653 3345555444332111 112234455553 33
Q ss_pred EEEEeCCCC--ccCccc--cCccCCC-CCCCcEEEEEeCC
Q 039180 210 LLILDNTWK--SLDLGT--IGIPFGV-EHRGCKLLFTTRD 244 (790)
Q Consensus 210 LlVlDdv~~--~~~~~~--l~~~~~~-~~~gs~iliTtR~ 244 (790)
||||||+.. ..+|.. +...+.. -..+..+||||..
T Consensus 181 lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 181 LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 899999943 333432 2222211 1245568999875
No 183
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.03 E-value=0.0047 Score=66.34 Aligned_cols=151 Identities=15% Similarity=0.174 Sum_probs=83.7
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcC
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNE 206 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 206 (790)
..+-|.++|++|+|||++|+.+++.... .| +.+..+ .+...... . ....+..++......
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~--~f---i~i~~s----------~l~~k~~g----e-~~~~lr~lf~~A~~~ 237 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTA--TF---IRVVGS----------EFVQKYLG----E-GPRMVRDVFRLAREN 237 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCC--CE---EEEehH----------HHHHHhcc----h-hHHHHHHHHHHHHhc
Confidence 4567889999999999999999987532 22 222111 11111100 1 122344555555555
Q ss_pred CcEEEEEeCCCCccC----------------ccccCccCC--CCCCCcEEEEEeCChhHHhh--h---CCCceEEccCCC
Q 039180 207 KKILLILDNTWKSLD----------------LGTIGIPFG--VEHRGCKLLFTTRDLDVLIR--M---GSEKNFSIGILN 263 (790)
Q Consensus 207 kr~LlVlDdv~~~~~----------------~~~l~~~~~--~~~~gs~iliTtR~~~v~~~--~---~~~~~~~l~~L~ 263 (790)
.+.+|++|+++.... +..+...+. ....+..||+||...+..+. . .-...+.+...+
T Consensus 238 ~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~ 317 (398)
T PTZ00454 238 APSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 317 (398)
T ss_pred CCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcC
Confidence 789999999864310 001111111 12235568888876443322 2 223578899899
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCc
Q 039180 264 EQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLP 299 (790)
Q Consensus 264 ~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 299 (790)
.++...+|+..........+. ....+++...|.-
T Consensus 318 ~~~R~~Il~~~~~~~~l~~dv--d~~~la~~t~g~s 351 (398)
T PTZ00454 318 RRQKRLIFQTITSKMNLSEEV--DLEDFVSRPEKIS 351 (398)
T ss_pred HHHHHHHHHHHHhcCCCCccc--CHHHHHHHcCCCC
Confidence 999888888766532222211 1345666666643
No 184
>CHL00176 ftsH cell division protein; Validated
Probab=96.99 E-value=0.008 Score=68.46 Aligned_cols=148 Identities=17% Similarity=0.238 Sum_probs=84.3
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
.+-|.++|++|+|||++|+.++..... + ++.++.. ++... ..+ .....+..+++......
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~~~--p-----~i~is~s----~f~~~---~~g------~~~~~vr~lF~~A~~~~ 275 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEAEV--P-----FFSISGS----EFVEM---FVG------VGAARVRDLFKKAKENS 275 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCC--C-----eeeccHH----HHHHH---hhh------hhHHHHHHHHHHHhcCC
Confidence 345899999999999999999886522 1 2222211 11000 001 01123445555555567
Q ss_pred cEEEEEeCCCCcc------------C----ccccCccCCC--CCCCcEEEEEeCChhHHhh--h---CCCceEEccCCCH
Q 039180 208 KILLILDNTWKSL------------D----LGTIGIPFGV--EHRGCKLLFTTRDLDVLIR--M---GSEKNFSIGILNE 264 (790)
Q Consensus 208 r~LlVlDdv~~~~------------~----~~~l~~~~~~--~~~gs~iliTtR~~~v~~~--~---~~~~~~~l~~L~~ 264 (790)
+++|++||++... . +..+...+.. ...+-.||.||...+..+. . .-...+.++..+.
T Consensus 276 P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~ 355 (638)
T CHL00176 276 PCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDR 355 (638)
T ss_pred CcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCH
Confidence 8999999996441 0 1111111111 2334556667766443332 1 1235788999999
Q ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcC
Q 039180 265 QEAWRLFKIIAGAYVENRELKSTATSVAKACRG 297 (790)
Q Consensus 265 ~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~g 297 (790)
++-.++++.++...... .......+++.+.|
T Consensus 356 ~~R~~IL~~~l~~~~~~--~d~~l~~lA~~t~G 386 (638)
T CHL00176 356 EGRLDILKVHARNKKLS--PDVSLELIARRTPG 386 (638)
T ss_pred HHHHHHHHHHHhhcccc--hhHHHHHHHhcCCC
Confidence 99999998887542211 12345667777777
No 185
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.97 E-value=0.031 Score=57.87 Aligned_cols=147 Identities=13% Similarity=0.113 Sum_probs=88.8
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhc-------------------cCCCEEEEEEe---CCCCCHHHHHHHHHHHhCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIED-------------------ELYDMVVFSEV---TQSPDIKQIQQEIAEKLGL 185 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~-------------------~~f~~~~wv~~---~~~~~~~~~~~~i~~~l~~ 185 (790)
.+-+.++|+.|+||+++|..++...--. .|-| ..|+.- ++...+++
T Consensus 25 ~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~~~~~I~vdq----------- 92 (319)
T PRK06090 25 PGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD-LHVIKPEKEGKSITVEQ----------- 92 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecCcCCCcCCHHH-----------
Confidence 3678899999999999999988764211 2333 222221 11122222
Q ss_pred CCchhHHHHHHHHHHHHHH----cCCcEEEEEeCCCCc--cCccccCccCCCCCCCcEEEEEeCC-hhHHhh-hCCCceE
Q 039180 186 ELSEEAEFRRASRMFERLK----NEKKILLILDNTWKS--LDLGTIGIPFGVEHRGCKLLFTTRD-LDVLIR-MGSEKNF 257 (790)
Q Consensus 186 ~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtR~-~~v~~~-~~~~~~~ 257 (790)
+..+.+.+. .+++-++|+|+++.. ....++...+-....++.+|++|.+ ..+... .+..+.+
T Consensus 93 ----------iR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~ 162 (319)
T PRK06090 93 ----------IRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQW 162 (319)
T ss_pred ----------HHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeE
Confidence 222222221 345678999999766 2344444444333455666655554 445544 5566799
Q ss_pred EccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHHHHHH
Q 039180 258 SIGILNEQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIALTIV 305 (790)
Q Consensus 258 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 305 (790)
.+.+++.+++.+.+...... ....+++.++|.|+....+
T Consensus 163 ~~~~~~~~~~~~~L~~~~~~---------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 163 VVTPPSTAQAMQWLKGQGIT---------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred eCCCCCHHHHHHHHHHcCCc---------hHHHHHHHcCCCHHHHHHH
Confidence 99999999999888653111 1346788999999866544
No 186
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.018 Score=63.56 Aligned_cols=140 Identities=16% Similarity=0.155 Sum_probs=77.5
Q ss_pred cCCceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHH
Q 039180 124 EDIWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERL 203 (790)
Q Consensus 124 ~~~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l 203 (790)
.+.+=++++.+|++|+|||.+|+.++...-.+ | +.++++.-.|..+|.-.=-..+| .....+..-.+..
T Consensus 434 gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk--F---fRfSvGG~tDvAeIkGHRRTYVG------AMPGkiIq~LK~v 502 (906)
T KOG2004|consen 434 GSVQGKILCFVGPPGVGKTSIAKSIARALNRK--F---FRFSVGGMTDVAEIKGHRRTYVG------AMPGKIIQCLKKV 502 (906)
T ss_pred ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc--e---EEEeccccccHHhhcccceeeec------cCChHHHHHHHhh
Confidence 45677899999999999999999999887432 3 45667776666654221111111 1112222222233
Q ss_pred HcCCcEEEEEeCCCCcc------------------CccccCccCCC-CCCCcEEEE-EeCC--hhHHhh-hCCCceEEcc
Q 039180 204 KNEKKILLILDNTWKSL------------------DLGTIGIPFGV-EHRGCKLLF-TTRD--LDVLIR-MGSEKNFSIG 260 (790)
Q Consensus 204 ~~~kr~LlVlDdv~~~~------------------~~~~l~~~~~~-~~~gs~ili-TtR~--~~v~~~-~~~~~~~~l~ 260 (790)
.. ..=|+.+|.|+..- +-..+...+.+ .-.=|+|++ .|-+ ..+... .+..+.+++.
T Consensus 503 ~t-~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRMEvIels 581 (906)
T KOG2004|consen 503 KT-ENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRMEVIELS 581 (906)
T ss_pred CC-CCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhhhhheeecc
Confidence 22 34688899987541 11111111111 112356655 3332 111111 4556799999
Q ss_pred CCCHHHHHHHHHHHh
Q 039180 261 ILNEQEAWRLFKIIA 275 (790)
Q Consensus 261 ~L~~~~~~~Lf~~~~ 275 (790)
+...+|-.++-.++.
T Consensus 582 GYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 582 GYVAEEKVKIAERYL 596 (906)
T ss_pred CccHHHHHHHHHHhh
Confidence 999988877766654
No 187
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.95 E-value=0.037 Score=59.44 Aligned_cols=60 Identities=22% Similarity=0.228 Sum_probs=37.5
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQS-PDIKQIQQEIAEKLGLEL 187 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~ 187 (790)
-.+++++|+.|+||||++..++.........+.+..+..... ....+-+...++.++.+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~ 251 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSV 251 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCce
Confidence 479999999999999999988876432222334455544332 233333455556666554
No 188
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.94 E-value=0.052 Score=62.31 Aligned_cols=88 Identities=18% Similarity=0.218 Sum_probs=52.6
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQS-PDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNE 206 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 206 (790)
-++|+++|+.|+||||.+..++...........+..++.... ....+-++...+.++.+.....+...+....+.+.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~- 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGD- 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcC-
Confidence 479999999999999999999977643322234556655432 224455666666666554322222234444444543
Q ss_pred CcEEEEEeCCC
Q 039180 207 KKILLILDNTW 217 (790)
Q Consensus 207 kr~LlVlDdv~ 217 (790)
+ =+|++|=.-
T Consensus 264 ~-D~VLIDTAG 273 (767)
T PRK14723 264 K-HLVLIDTVG 273 (767)
T ss_pred C-CEEEEeCCC
Confidence 3 366777664
No 189
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.93 E-value=0.0066 Score=59.64 Aligned_cols=48 Identities=25% Similarity=0.290 Sum_probs=37.5
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQE 178 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 178 (790)
-.++.|+|.+|+|||++|.+++...... ...++|++... ++...+.+.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~-~~~~rl~~~ 59 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTEG-LSPERFKQI 59 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC-CCHHHHHHH
Confidence 4789999999999999999988776432 46789999876 666655443
No 190
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.88 E-value=0.062 Score=56.28 Aligned_cols=89 Identities=19% Similarity=0.189 Sum_probs=55.8
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHc
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSP-DIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKN 205 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 205 (790)
..++++++|+.|+||||++..++.....+ -..+.++++.... ...+-++..++.++.+.....+...+....+.+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 46899999999999999999998776443 2357777776543 23445566666666554322223333444455541
Q ss_pred -CCcEEEEEeCCC
Q 039180 206 -EKKILLILDNTW 217 (790)
Q Consensus 206 -~kr~LlVlDdv~ 217 (790)
+..=+|++|-.-
T Consensus 283 ~~~~D~VLIDTAG 295 (407)
T PRK12726 283 VNCVDHILIDTVG 295 (407)
T ss_pred cCCCCEEEEECCC
Confidence 234577778763
No 191
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.027 Score=57.37 Aligned_cols=177 Identities=16% Similarity=0.199 Sum_probs=101.1
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHc
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKN 205 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 205 (790)
+..+=|.++|++|.|||-||++|+++.... | +-|.. .++.+..-.. ....+..+++--+.
T Consensus 183 ~PPKGVLLYGPPGTGKTLLAkAVA~~T~At--F-----Irvvg--------SElVqKYiGE-----GaRlVRelF~lAre 242 (406)
T COG1222 183 DPPKGVLLYGPPGTGKTLLAKAVANQTDAT--F-----IRVVG--------SELVQKYIGE-----GARLVRELFELARE 242 (406)
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCce--E-----EEecc--------HHHHHHHhcc-----chHHHHHHHHHHhh
Confidence 455668999999999999999999875432 3 22221 1222222111 12345566666667
Q ss_pred CCcEEEEEeCCCCccC----------------ccccCccCCC--CCCCcEEEEEeCChhHHhh--hC---CCceEEccCC
Q 039180 206 EKKILLILDNTWKSLD----------------LGTIGIPFGV--EHRGCKLLFTTRDLDVLIR--MG---SEKNFSIGIL 262 (790)
Q Consensus 206 ~kr~LlVlDdv~~~~~----------------~~~l~~~~~~--~~~gs~iliTtR~~~v~~~--~~---~~~~~~l~~L 262 (790)
+...+|.+|.++.... +-++...+.. ....-|||..|.-.++.+. +. -+..+++..-
T Consensus 243 kaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplP 322 (406)
T COG1222 243 KAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLP 322 (406)
T ss_pred cCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCC
Confidence 7899999999875410 0011111211 1234588887776555544 22 2357888866
Q ss_pred CHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCc----HHHHHHHHHHh--c-C---ChhHHHHHHHHh
Q 039180 263 NEQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLP----IALTIVVKALR--N-K---ELPEWKNALQEL 324 (790)
Q Consensus 263 ~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP----lai~~~~~~l~--~-~---~~~~w~~~l~~l 324 (790)
+.+.-.++|+-++.......+. -.+.+++.+.|.- .|+.+=|+++. . + +.+++..+.+..
T Consensus 323 d~~gR~~Il~IHtrkM~l~~dv--d~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 323 DEEGRAEILKIHTRKMNLADDV--DLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKV 392 (406)
T ss_pred CHHHHHHHHHHHhhhccCccCc--CHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHH
Confidence 6666677888887643322221 1345666666654 44566666554 2 1 555666655553
No 192
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.86 E-value=0.0082 Score=60.21 Aligned_cols=91 Identities=20% Similarity=0.238 Sum_probs=55.9
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccC----CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCc-------------h
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDEL----YDMVVFSEVTQSPDIKQIQQEIAEKLGLELS-------------E 189 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------------~ 189 (790)
.-.++.|+|.+|+|||++|.+++........ ...++|++....++...+. ++++..+.... .
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCCH
Confidence 3478999999999999999999865322211 2578999988877765543 34444332211 1
Q ss_pred hHHHHHHHHHHHHHHcC-CcEEEEEeCCCC
Q 039180 190 EAEFRRASRMFERLKNE-KKILLILDNTWK 218 (790)
Q Consensus 190 ~~~~~~~~~l~~~l~~~-kr~LlVlDdv~~ 218 (790)
......+..+...+.+. +--+||+|.+..
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 11122334444445444 667888888743
No 193
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.86 E-value=0.0057 Score=58.88 Aligned_cols=87 Identities=21% Similarity=0.259 Sum_probs=55.1
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCCCch----hHHHHHHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQS-PDIKQIQQEIAEKLGLELSE----EAEFRRASRMFER 202 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~l~~~ 202 (790)
.+||.++|+.|+||||.+.+++.....+ -..+..++.... ....+-++..++.++.+... .+..+.+....+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 3789999999999999999999887655 445777777643 34556677888888765321 1233334444444
Q ss_pred HHcCCcEEEEEeCC
Q 039180 203 LKNEKKILLILDNT 216 (790)
Q Consensus 203 l~~~kr~LlVlDdv 216 (790)
....+.=++++|=.
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 44323336666654
No 194
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.86 E-value=0.023 Score=59.01 Aligned_cols=161 Identities=10% Similarity=0.076 Sum_probs=88.2
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC-------CchhHHHHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLE-------LSEEAEFRRASRMF 200 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~~~~~~~l~ 200 (790)
.+-..++|+.|+||+++|..++...--....... .++.. ...+.+...-..+ ....-..+.+..+.
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~---~Cg~C----~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~ 96 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQ---PCGQC----HSCHLFQAGNHPDFHILEPIDNKDIGVDQVREIN 96 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCC---CCCCC----HHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHH
Confidence 3677899999999999999998775321111000 00000 0001110000000 00000122233333
Q ss_pred HHHH----cCCcEEEEEeCCCCcc--CccccCccCCCCCCCcEEEEEeCC-hhHHhh-hCCCceEEccCCCHHHHHHHHH
Q 039180 201 ERLK----NEKKILLILDNTWKSL--DLGTIGIPFGVEHRGCKLLFTTRD-LDVLIR-MGSEKNFSIGILNEQEAWRLFK 272 (790)
Q Consensus 201 ~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~ 272 (790)
+.+. .+++-++|+|+++... ....+...+-....++.+|++|.+ ..+... .+..+.+.+.+++.++..+.+.
T Consensus 97 ~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~ 176 (325)
T PRK06871 97 EKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQ 176 (325)
T ss_pred HHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHH
Confidence 3332 3567788999997663 334444444333456666666665 445444 4556799999999999998887
Q ss_pred HHhCCCCCCcchHHHHHHHHHHhcCCcHH
Q 039180 273 IIAGAYVENRELKSTATSVAKACRGLPIA 301 (790)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~i~~~~~glPla 301 (790)
..... + ...+...+..++|.|..
T Consensus 177 ~~~~~----~--~~~~~~~~~l~~g~p~~ 199 (325)
T PRK06871 177 AQSSA----E--ISEILTALRINYGRPLL 199 (325)
T ss_pred HHhcc----C--hHHHHHHHHHcCCCHHH
Confidence 75421 1 12355678889999963
No 195
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.86 E-value=0.011 Score=67.15 Aligned_cols=155 Identities=17% Similarity=0.165 Sum_probs=88.2
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhcc--------------------CCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCc
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDE--------------------LYDMVVFSEVTQSPDIKQIQQEIAEKLGLELS 188 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~--------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 188 (790)
+.+.++|+.|+||||+|+.++...--.. +++ ++.++......+.
T Consensus 39 hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d-~~eid~~s~~~v~--------------- 102 (576)
T PRK14965 39 HAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVD-VFEIDGASNTGVD--------------- 102 (576)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCC-eeeeeccCccCHH---------------
Confidence 6678999999999999999988753211 111 1111111111111
Q ss_pred hhHHHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--CccccCccCCCCCCCcEEEE-EeCChhHHhh-hCCCceEEcc
Q 039180 189 EEAEFRRASRMFERLK----NEKKILLILDNTWKSL--DLGTIGIPFGVEHRGCKLLF-TTRDLDVLIR-MGSEKNFSIG 260 (790)
Q Consensus 189 ~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ili-TtR~~~v~~~-~~~~~~~~l~ 260 (790)
.+..+.+.+. .+++-++|+|++.... ..+.+...+-.......+|+ ||....+... ......++..
T Consensus 103 ------~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~ 176 (576)
T PRK14965 103 ------DIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFR 176 (576)
T ss_pred ------HHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcC
Confidence 1222222221 2456689999986552 33444444433334555555 4444555443 4455688899
Q ss_pred CCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCc-HHHHHHH
Q 039180 261 ILNEQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLP-IALTIVV 306 (790)
Q Consensus 261 ~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~~~ 306 (790)
+++.++....+...+...... -..+....|++.++|.. .|+..+-
T Consensus 177 ~l~~~~i~~~L~~i~~~egi~-i~~~al~~la~~a~G~lr~al~~Ld 222 (576)
T PRK14965 177 RIPLQKIVDRLRYIADQEGIS-ISDAALALVARKGDGSMRDSLSTLD 222 (576)
T ss_pred CCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999888877765422211 22456777888998865 4444443
No 196
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.84 E-value=0.018 Score=59.66 Aligned_cols=157 Identities=13% Similarity=0.102 Sum_probs=89.3
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhcc-----------------CCCEEEEEEeCC-CCCHHHHHHHHHHHhCCCCch
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDE-----------------LYDMVVFSEVTQ-SPDIKQIQQEIAEKLGLELSE 189 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~-----------------~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~ 189 (790)
.+-+.++|+.|+||+++|..++...--.. |-| +.|+.... ..+. ....
T Consensus 26 ~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD-~~~i~~~p~~~~~-------------k~~~ 91 (319)
T PRK08769 26 GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPD-LQLVSFIPNRTGD-------------KLRT 91 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCC-EEEEecCCCcccc-------------cccc
Confidence 36788999999999999999887653221 112 22221100 0000 0000
Q ss_pred hHHHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--CccccCccCCCCCCCcEEEEEeCC-hhHHhh-hCCCceEEccC
Q 039180 190 EAEFRRASRMFERLK----NEKKILLILDNTWKSL--DLGTIGIPFGVEHRGCKLLFTTRD-LDVLIR-MGSEKNFSIGI 261 (790)
Q Consensus 190 ~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR~-~~v~~~-~~~~~~~~l~~ 261 (790)
.-..+.+..+.+.+. .+++-++|+|+++... .-.++...+-.-..++.+|++|.+ ..+... .+....+.+.+
T Consensus 92 ~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~ 171 (319)
T PRK08769 92 EIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKL 171 (319)
T ss_pred cccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCC
Confidence 001222333333332 3567799999997662 223333333333446666666654 444444 45567899999
Q ss_pred CCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHHHHHH
Q 039180 262 LNEQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIALTIV 305 (790)
Q Consensus 262 L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 305 (790)
++.+++.+.+.... .+ +..+..++..++|.|+.....
T Consensus 172 ~~~~~~~~~L~~~~----~~---~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 172 PPAHEALAWLLAQG----VS---ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred cCHHHHHHHHHHcC----CC---hHHHHHHHHHcCCCHHHHHHH
Confidence 99999988886531 11 223667899999999855433
No 197
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.83 E-value=0.00013 Score=70.73 Aligned_cols=100 Identities=21% Similarity=0.182 Sum_probs=56.4
Q ss_pred CCceEEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccch--hhhcccccceec
Q 039180 500 VKKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPK--ALGELTKLRLSD 577 (790)
Q Consensus 500 l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~--~l~~l~~L~~L~ 577 (790)
+.+.+.|++.+|.+..+ +.+..++.|++|.||-|.|+.+ ..+..|++|+.|.|+.|.|..+-. -+.++++|+.|.
T Consensus 18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 34455566666665544 2234566666666666666663 345666666666666666554432 245666777777
Q ss_pred CCccccccccCch----hhccccccceEe
Q 039180 578 LTDCFHLKVIAPN----VISSLTRLEELY 602 (790)
Q Consensus 578 l~~~~~l~~~~~~----~l~~l~~L~~L~ 602 (790)
|..|...+.-++. .+.-||+|+.|+
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 7666444433321 234466666665
No 198
>PRK07261 topology modulation protein; Provisional
Probab=96.83 E-value=0.0033 Score=59.30 Aligned_cols=34 Identities=26% Similarity=0.402 Sum_probs=25.7
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhhhc-cCCCEEEE
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAIED-ELYDMVVF 163 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~w 163 (790)
.|.|+|++|+||||||+.+....... -+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 48999999999999999998775322 23455555
No 199
>PRK04132 replication factor C small subunit; Provisional
Probab=96.83 E-value=0.02 Score=66.67 Aligned_cols=152 Identities=9% Similarity=0.045 Sum_probs=93.8
Q ss_pred CCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCCcEEEEEeC
Q 039180 136 MGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEKKILLILDN 215 (790)
Q Consensus 136 ~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDd 215 (790)
+.++||||+|..+++..-.+..-..++-+++++..+...+.+ +.+.+....+ +...+..++|+|+
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~-iIk~~a~~~~--------------~~~~~~KVvIIDE 638 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIRE-KVKEFARTKP--------------IGGASFKIIFLDE 638 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHH-HHHHHHhcCC--------------cCCCCCEEEEEEC
Confidence 788999999999998863322123467788887666554433 3222211000 0012457999999
Q ss_pred CCCcc--CccccCccCCCCCCCcEEEEEeCC-hhHHhh-hCCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHH
Q 039180 216 TWKSL--DLGTIGIPFGVEHRGCKLLFTTRD-LDVLIR-MGSEKNFSIGILNEQEAWRLFKIIAGAYVENRELKSTATSV 291 (790)
Q Consensus 216 v~~~~--~~~~l~~~~~~~~~gs~iliTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i 291 (790)
++... ..+.+...+-.....+++|.+|.+ ..+... ......+.+.+++.++....+...+...... -.++....|
T Consensus 639 aD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~-i~~e~L~~I 717 (846)
T PRK04132 639 ADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE-LTEEGLQAI 717 (846)
T ss_pred cccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHH
Confidence 98763 444444444333345666665554 444433 4456799999999999988887765422211 124578889
Q ss_pred HHHhcCCcHHHH
Q 039180 292 AKACRGLPIALT 303 (790)
Q Consensus 292 ~~~~~glPlai~ 303 (790)
++.++|.+..+.
T Consensus 718 a~~s~GDlR~AI 729 (846)
T PRK04132 718 LYIAEGDMRRAI 729 (846)
T ss_pred HHHcCCCHHHHH
Confidence 999999885443
No 200
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.80 E-value=0.037 Score=54.06 Aligned_cols=98 Identities=13% Similarity=0.181 Sum_probs=57.1
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH-c
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLK-N 205 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~-~ 205 (790)
...-|.++|..|+|||++++++.+....++ =.++-| . ..+...+..+.+.+. .
T Consensus 51 pannvLL~G~rGtGKSSlVkall~~y~~~G--LRlIev--~----------------------k~~L~~l~~l~~~l~~~ 104 (249)
T PF05673_consen 51 PANNVLLWGARGTGKSSLVKALLNEYADQG--LRLIEV--S----------------------KEDLGDLPELLDLLRDR 104 (249)
T ss_pred CCcceEEecCCCCCHHHHHHHHHHHHhhcC--ceEEEE--C----------------------HHHhccHHHHHHHHhcC
Confidence 456688899999999999999999876543 112222 1 122233444555554 3
Q ss_pred CCcEEEEEeCCCCc---cCccccCccCCC----CCCCcEEEEEeCChhHHhh
Q 039180 206 EKKILLILDNTWKS---LDLGTIGIPFGV----EHRGCKLLFTTRDLDVLIR 250 (790)
Q Consensus 206 ~kr~LlVlDdv~~~---~~~~~l~~~~~~----~~~gs~iliTtR~~~v~~~ 250 (790)
..||+|.+||+.-. .....++..+.. ...+..|..||.-++....
T Consensus 105 ~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E 156 (249)
T PF05673_consen 105 PYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPE 156 (249)
T ss_pred CCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccch
Confidence 57899999998432 234444444422 2223344555554554443
No 201
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.80 E-value=0.00047 Score=66.76 Aligned_cols=103 Identities=24% Similarity=0.287 Sum_probs=58.5
Q ss_pred ccCCceEEEEecCccccCCChhhhhccccceeeccCc--cccccchhhhhccCcccEEeccCCCCcc---cchhhhcccc
Q 039180 498 KGVKKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQS--ILRDIDIAIIGKLKNLKILSFVRSDIVQ---LPKALGELTK 572 (790)
Q Consensus 498 ~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~--~l~~l~p~~i~~l~~L~~L~L~~~~l~~---lp~~l~~l~~ 572 (790)
..+..|+.|++.++.++.+ ..+-.|++|++|.++.| .+..-.+....++++|++|++++|++.. ++ .+..+.+
T Consensus 40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcc
Confidence 4455566666666655533 23346677888888877 4333223344556888888888886652 22 2556667
Q ss_pred cceecCCccccccccC---chhhccccccceEec
Q 039180 573 LRLSDLTDCFHLKVIA---PNVISSLTRLEELYM 603 (790)
Q Consensus 573 L~~L~l~~~~~l~~~~---~~~l~~l~~L~~L~l 603 (790)
|..|++.+|.. +.+- ...+.-+++|.+|+-
T Consensus 118 L~~Ldl~n~~~-~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 118 LKSLDLFNCSV-TNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhhhcccCCc-cccccHHHHHHHHhhhhccccc
Confidence 77777777732 2221 122334566666653
No 202
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.79 E-value=0.02 Score=60.27 Aligned_cols=125 Identities=14% Similarity=0.072 Sum_probs=74.3
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhcc--------------------CCCEEEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDE--------------------LYDMVVFSEVTQSPDIKQIQQEIAEKLGLEL 187 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~--------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 187 (790)
.+...++|+.|+||||+|..++...--.. |.|..+....+....
T Consensus 28 ~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~---------------- 91 (329)
T PRK08058 28 SHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSIK---------------- 91 (329)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccccccCC----------------
Confidence 36789999999999999999987753221 223221111111111
Q ss_pred chhHHHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--CccccCccCCCCCCCcEEEEEeCC-hhHHhh-hCCCceEEc
Q 039180 188 SEEAEFRRASRMFERLK----NEKKILLILDNTWKSL--DLGTIGIPFGVEHRGCKLLFTTRD-LDVLIR-MGSEKNFSI 259 (790)
Q Consensus 188 ~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR~-~~v~~~-~~~~~~~~l 259 (790)
.+.+..+.+.+. .+.+-++|+|+++... ..+.+...+-....++.+|++|.+ ..+... ......+++
T Consensus 92 -----id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~ 166 (329)
T PRK08058 92 -----KDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEF 166 (329)
T ss_pred -----HHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeC
Confidence 122223333322 2456689999986552 233444444444556777777765 333333 445679999
Q ss_pred cCCCHHHHHHHHHH
Q 039180 260 GILNEQEAWRLFKI 273 (790)
Q Consensus 260 ~~L~~~~~~~Lf~~ 273 (790)
.+++.++..+.+.+
T Consensus 167 ~~~~~~~~~~~L~~ 180 (329)
T PRK08058 167 RPLPPESLIQRLQE 180 (329)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999888765
No 203
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.78 E-value=0.073 Score=56.25 Aligned_cols=176 Identities=15% Similarity=0.125 Sum_probs=105.9
Q ss_pred cCCceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHh--CCCCchhHHHHHHHHHHH
Q 039180 124 EDIWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKL--GLELSEEAEFRRASRMFE 201 (790)
Q Consensus 124 ~~~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l--~~~~~~~~~~~~~~~l~~ 201 (790)
+....+-+-|.|.+|.|||.+...++.+......--.++.+++..-.....++..|...+ +..... ...+....+..
T Consensus 171 e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~-~~~~~~~~~~~ 249 (529)
T KOG2227|consen 171 ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPG-TGMQHLEKFEK 249 (529)
T ss_pred hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCc-hhHHHHHHHHH
Confidence 456677889999999999999999998865432222457777776667777888887776 222111 12334455555
Q ss_pred HHHcCC-cEEEEEeCCCCcc--CccccCccCCC-CCCCcEEEEEeCC--hhHHh----hh-----CCCceEEccCCCHHH
Q 039180 202 RLKNEK-KILLILDNTWKSL--DLGTIGIPFGV-EHRGCKLLFTTRD--LDVLI----RM-----GSEKNFSIGILNEQE 266 (790)
Q Consensus 202 ~l~~~k-r~LlVlDdv~~~~--~~~~l~~~~~~-~~~gs~iliTtR~--~~v~~----~~-----~~~~~~~l~~L~~~~ 266 (790)
...+.+ -+|+|+|+.+... .-..+...|.+ .-+++|+|+.--- -+..+ .+ -....+...|.+.++
T Consensus 250 h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~q 329 (529)
T KOG2227|consen 250 HTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQ 329 (529)
T ss_pred HHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHH
Confidence 555444 7999999987552 11111111211 2345555443221 11111 11 123578889999999
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcH
Q 039180 267 AWRLFKIIAGAYVENRELKSTATSVAKACRGLPI 300 (790)
Q Consensus 267 ~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 300 (790)
-.++|..+.............++-++++|.|.-=
T Consensus 330 I~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG 363 (529)
T KOG2227|consen 330 IVEILQQRLSEESTSIFLNAAIELCARKVAAPSG 363 (529)
T ss_pred HHHHHHHHHhcccccccchHHHHHHHHHhccCch
Confidence 9999999886544444444456666666665443
No 204
>PRK08181 transposase; Validated
Probab=96.74 E-value=0.0017 Score=65.52 Aligned_cols=98 Identities=19% Similarity=0.158 Sum_probs=55.5
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCCc
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEKK 208 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 208 (790)
.-+.++|+.|+|||.||..+++..... ...++++++ .++...+..... ........+.+. +-
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~~------~~L~~~l~~a~~--------~~~~~~~l~~l~--~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTRT------TDLVQKLQVARR--------ELQLESAIAKLD--KF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeeeH------HHHHHHHHHHHh--------CCcHHHHHHHHh--cC
Confidence 448999999999999999999876433 234566653 344444433211 011223445554 34
Q ss_pred EEEEEeCCCCc--cCc--cccCccCCCCCCCcEEEEEeCC
Q 039180 209 ILLILDNTWKS--LDL--GTIGIPFGVEHRGCKLLFTTRD 244 (790)
Q Consensus 209 ~LlVlDdv~~~--~~~--~~l~~~~~~~~~gs~iliTtR~ 244 (790)
=|||+||+... ..+ ..+...+.....+..+||||..
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~ 208 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQ 208 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 59999998543 111 1222222221122358898885
No 205
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.72 E-value=0.042 Score=65.11 Aligned_cols=136 Identities=19% Similarity=0.169 Sum_probs=68.2
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
-+++.++|++|+|||++|+.+++.... .| +-++++...+..++...-....+.. ...+...+..... +
T Consensus 347 ~~~lll~GppG~GKT~lAk~iA~~l~~--~~---~~i~~~~~~~~~~i~g~~~~~~g~~------~g~i~~~l~~~~~-~ 414 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSIAKALNR--KF---VRFSLGGVRDEAEIRGHRRTYVGAM------PGRIIQGLKKAKT-K 414 (775)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcC--Ce---EEEeCCCcccHHHHcCCCCceeCCC------CchHHHHHHHhCc-C
Confidence 458999999999999999999988642 23 2233333333332211000000100 1111122222222 3
Q ss_pred cEEEEEeCCCCccCc------cccCc--------cCCCC-------CCCcEEEEEeCChh-HHhh-hCCCceEEccCCCH
Q 039180 208 KILLILDNTWKSLDL------GTIGI--------PFGVE-------HRGCKLLFTTRDLD-VLIR-MGSEKNFSIGILNE 264 (790)
Q Consensus 208 r~LlVlDdv~~~~~~------~~l~~--------~~~~~-------~~gs~iliTtR~~~-v~~~-~~~~~~~~l~~L~~ 264 (790)
+-+|+||+++....- ..+.. .|.+. ..+.-+|.||.... +... .+....+.+.+++.
T Consensus 415 ~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~ 494 (775)
T TIGR00763 415 NPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLDRMEVIELSGYTE 494 (775)
T ss_pred CCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhCCeeEEecCCCCH
Confidence 347899998765210 01111 11111 12233444554432 2111 34446889999999
Q ss_pred HHHHHHHHHHh
Q 039180 265 QEAWRLFKIIA 275 (790)
Q Consensus 265 ~~~~~Lf~~~~ 275 (790)
++-.+++.++.
T Consensus 495 ~e~~~I~~~~l 505 (775)
T TIGR00763 495 EEKLEIAKKYL 505 (775)
T ss_pred HHHHHHHHHHH
Confidence 88888876654
No 206
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.69 E-value=0.014 Score=65.52 Aligned_cols=155 Identities=17% Similarity=0.197 Sum_probs=83.6
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCCc
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEKK 208 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 208 (790)
+=+.++|++|+|||++|+.++..... +| +.++. .++... ..+. ....+..+++......+
T Consensus 89 ~giLL~GppGtGKT~la~alA~~~~~--~~-----~~i~~----~~~~~~---~~g~------~~~~l~~~f~~a~~~~p 148 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGEAGV--PF-----FSISG----SDFVEM---FVGV------GASRVRDLFEQAKKNAP 148 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCC--Ce-----eeccH----HHHHHH---Hhcc------cHHHHHHHHHHHHhcCC
Confidence 44889999999999999999876532 12 22221 111110 0110 11234455555554567
Q ss_pred EEEEEeCCCCccC------------c----cccCccCC--CCCCCcEEEEEeCChhHHhh-h----CCCceEEccCCCHH
Q 039180 209 ILLILDNTWKSLD------------L----GTIGIPFG--VEHRGCKLLFTTRDLDVLIR-M----GSEKNFSIGILNEQ 265 (790)
Q Consensus 209 ~LlVlDdv~~~~~------------~----~~l~~~~~--~~~~gs~iliTtR~~~v~~~-~----~~~~~~~l~~L~~~ 265 (790)
.+|++||++.... + ..+...+. ....+-.||.||...+..+. + .-...+.+...+.+
T Consensus 149 ~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~ 228 (495)
T TIGR01241 149 CIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIK 228 (495)
T ss_pred CEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHH
Confidence 8999999965410 0 01111111 11233456666665432222 1 23457889999999
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCc-HHHHHH
Q 039180 266 EAWRLFKIIAGAYVENRELKSTATSVAKACRGLP-IALTIV 305 (790)
Q Consensus 266 ~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~~ 305 (790)
+-.++|+.+........+ .....+++.+.|.- -.|..+
T Consensus 229 ~R~~il~~~l~~~~~~~~--~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 229 GREEILKVHAKNKKLAPD--VDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred HHHHHHHHHHhcCCCCcc--hhHHHHHHhCCCCCHHHHHHH
Confidence 999999887753322211 22457788887743 334333
No 207
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.68 E-value=0.0016 Score=57.63 Aligned_cols=23 Identities=48% Similarity=0.641 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHh
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
+|+|.|++|+||||+|+.+++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999886
No 208
>PRK10536 hypothetical protein; Provisional
Probab=96.67 E-value=0.0059 Score=60.25 Aligned_cols=34 Identities=26% Similarity=0.280 Sum_probs=25.7
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEE
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVV 162 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~ 162 (790)
.+|.+.|.+|+|||+||.+++.+.-..+.|+.++
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIi 108 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAEALIHKDVDRII 108 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEE
Confidence 5899999999999999999988643223355443
No 209
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.66 E-value=0.0062 Score=57.70 Aligned_cols=80 Identities=20% Similarity=0.244 Sum_probs=52.8
Q ss_pred cCCceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHH--HhCCCCchhHHHHHHHHHHH
Q 039180 124 EDIWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAE--KLGLELSEEAEFRRASRMFE 201 (790)
Q Consensus 124 ~~~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~l~~ 201 (790)
.+++.+-+.|.||+|+||||-+..+++..-...+-+.+.-.++|+...+.-+...|-. |-...
T Consensus 44 ~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~FAQ~kv~--------------- 108 (333)
T KOG0991|consen 44 KEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMFAQKKVT--------------- 108 (333)
T ss_pred HcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHHHHhhcc---------------
Confidence 3456788999999999999999999988766555566777777776655444333321 11111
Q ss_pred HHHcCCcEEEEEeCCCCc
Q 039180 202 RLKNEKKILLILDNTWKS 219 (790)
Q Consensus 202 ~l~~~kr~LlVlDdv~~~ 219 (790)
+-.++--++|||+.++.
T Consensus 109 -lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 109 -LPPGRHKIIILDEADSM 125 (333)
T ss_pred -CCCCceeEEEeeccchh
Confidence 11245567888888765
No 210
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.65 E-value=0.016 Score=54.04 Aligned_cols=118 Identities=22% Similarity=0.210 Sum_probs=67.6
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhc-------------------cCCCEEEEEEeCCC---CCHHHHHHHHHHHhCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIED-------------------ELYDMVVFSEVTQS---PDIKQIQQEIAEKLGL 185 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~-------------------~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~ 185 (790)
.+.+.++|+.|+||+++|..++...-.. .|.| +.|+.-... ..+.++. ++...+..
T Consensus 19 ~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~~~i~i~~ir-~i~~~~~~ 96 (162)
T PF13177_consen 19 PHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD-FIIIKPDKKKKSIKIDQIR-EIIEFLSL 96 (162)
T ss_dssp -SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT-EEEEETTTSSSSBSHHHHH-HHHHHCTS
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc-eEEEecccccchhhHHHHH-HHHHHHHH
Confidence 3678999999999999999998775322 1333 344443322 3444333 44444433
Q ss_pred CCchhHHHHHHHHHHHHHHcCCcEEEEEeCCCCc--cCccccCccCCCCCCCcEEEEEeCChh-HHhh-hCCCceEEccC
Q 039180 186 ELSEEAEFRRASRMFERLKNEKKILLILDNTWKS--LDLGTIGIPFGVEHRGCKLLFTTRDLD-VLIR-MGSEKNFSIGI 261 (790)
Q Consensus 186 ~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtR~~~-v~~~-~~~~~~~~l~~ 261 (790)
... .+++-++|+||++.. +...++...+-....++++|++|++.+ +... ......+.+.+
T Consensus 97 ~~~----------------~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~ 160 (162)
T PF13177_consen 97 SPS----------------EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRP 160 (162)
T ss_dssp S-T----------------TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE--
T ss_pred HHh----------------cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCC
Confidence 221 245679999999876 345555555544556888888888743 3333 45556777766
Q ss_pred CC
Q 039180 262 LN 263 (790)
Q Consensus 262 L~ 263 (790)
++
T Consensus 161 ls 162 (162)
T PF13177_consen 161 LS 162 (162)
T ss_dssp --
T ss_pred CC
Confidence 54
No 211
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.62 E-value=0.021 Score=58.03 Aligned_cols=42 Identities=24% Similarity=0.261 Sum_probs=29.6
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHH
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQ 176 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 176 (790)
-|.+.|++|+|||++|+.++.... ...+++++....+..++.
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg-----~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRD-----RPVMLINGDAELTTSDLV 64 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC-----CCEEEEeCCccCCHHHHh
Confidence 456899999999999999987541 124566666655555443
No 212
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.61 E-value=0.16 Score=60.71 Aligned_cols=85 Identities=18% Similarity=0.272 Sum_probs=45.0
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
..++.++|+.|+|||++|+.+++..... -...+.++++.-... . .+.+-+|.+.... ..+....+.+.+....
T Consensus 598 ~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~--~~~~i~id~se~~~~-~---~~~~LiG~~pgy~-g~~~~g~l~~~v~~~p 670 (857)
T PRK10865 598 IGSFLFLGPTGVGKTELCKALANFMFDS--DDAMVRIDMSEFMEK-H---SVSRLVGAPPGYV-GYEEGGYLTEAVRRRP 670 (857)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhhcC--CCcEEEEEhHHhhhh-h---hHHHHhCCCCccc-ccchhHHHHHHHHhCC
Confidence 4578999999999999999999765322 223455555432211 1 1112223221100 0001112333333334
Q ss_pred cEEEEEeCCCCc
Q 039180 208 KILLILDNTWKS 219 (790)
Q Consensus 208 r~LlVlDdv~~~ 219 (790)
.-+|+|||+...
T Consensus 671 ~~vLllDEieka 682 (857)
T PRK10865 671 YSVILLDEVEKA 682 (857)
T ss_pred CCeEEEeehhhC
Confidence 469999999744
No 213
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.60 E-value=0.018 Score=60.92 Aligned_cols=133 Identities=17% Similarity=0.200 Sum_probs=83.0
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcC
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNE 206 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 206 (790)
....+.|+|..|.|||-|++++++.......=..++.++. .....++...+.. +..+...+.+ +
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~s------e~f~~~~v~a~~~--------~~~~~Fk~~y-~- 175 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTS------EDFTNDFVKALRD--------NEMEKFKEKY-S- 175 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccH------HHHHHHHHHHHHh--------hhHHHHHHhh-c-
Confidence 5788999999999999999999998765422223444432 2233333333221 2234444445 3
Q ss_pred CcEEEEEeCCCCccC---cc-ccCccCCC-CCCCcEEEEEeCC---------hhHHhhhCCCceEEccCCCHHHHHHHHH
Q 039180 207 KKILLILDNTWKSLD---LG-TIGIPFGV-EHRGCKLLFTTRD---------LDVLIRMGSEKNFSIGILNEQEAWRLFK 272 (790)
Q Consensus 207 kr~LlVlDdv~~~~~---~~-~l~~~~~~-~~~gs~iliTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~Lf~ 272 (790)
-=++++||++.... |+ ++...|.. ...|.+||+|++. ..+...+...-++++++.+.+....++.
T Consensus 176 -~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 176 -LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred -cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 23888999876432 22 22233322 2234489999864 2334445666799999999999999998
Q ss_pred HHhC
Q 039180 273 IIAG 276 (790)
Q Consensus 273 ~~~~ 276 (790)
+.+.
T Consensus 255 kka~ 258 (408)
T COG0593 255 KKAE 258 (408)
T ss_pred HHHH
Confidence 8764
No 214
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.025 Score=64.53 Aligned_cols=89 Identities=16% Similarity=0.267 Sum_probs=51.1
Q ss_pred cCCceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHH
Q 039180 124 EDIWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERL 203 (790)
Q Consensus 124 ~~~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l 203 (790)
.+..++.....|+.|||||-||++++...-.. =+..+.++.|+-..... +.+-+|.+ +..-..+.-..+-+..
T Consensus 517 p~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~--e~aliR~DMSEy~EkHs----VSrLIGaP-PGYVGyeeGG~LTEaV 589 (786)
T COG0542 517 PNRPIGSFLFLGPTGVGKTELAKALAEALFGD--EQALIRIDMSEYMEKHS----VSRLIGAP-PGYVGYEEGGQLTEAV 589 (786)
T ss_pred CCCCceEEEeeCCCcccHHHHHHHHHHHhcCC--CccceeechHHHHHHHH----HHHHhCCC-CCCceeccccchhHhh
Confidence 44567788999999999999999999887322 14566666554322111 22223332 2211111122344445
Q ss_pred HcCCcEEEEEeCCCCc
Q 039180 204 KNEKKILLILDNTWKS 219 (790)
Q Consensus 204 ~~~kr~LlVlDdv~~~ 219 (790)
++..-.+|.||+++..
T Consensus 590 Rr~PySViLlDEIEKA 605 (786)
T COG0542 590 RRKPYSVILLDEIEKA 605 (786)
T ss_pred hcCCCeEEEechhhhc
Confidence 5423348899999755
No 215
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.58 E-value=0.037 Score=57.59 Aligned_cols=172 Identities=12% Similarity=0.119 Sum_probs=92.8
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhc--------------cCCCEEEEEEeCCCCCHHHHHHHHHHHhCC--CCchhH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIED--------------ELYDMVVFSEVTQSPDIKQIQQEIAEKLGL--ELSEEA 191 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~--------------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~--~~~~~~ 191 (790)
.+...++|+.|+||+++|..++...-.. .|-| ..|+.-....+-..+-..-+...+. .....-
T Consensus 26 ~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I 104 (314)
T PRK07399 26 APAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEPTYQHQGKLITASEAEEAGLKRKAPPQI 104 (314)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEeccccccccccchhhhhhccccccccccC
Confidence 3788999999999999999998875322 1222 3343211000000000111111110 000011
Q ss_pred HHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--CccccCccCCCCCCCcEEEEEe-CChhHHhh-hCCCceEEccCCC
Q 039180 192 EFRRASRMFERLK----NEKKILLILDNTWKSL--DLGTIGIPFGVEHRGCKLLFTT-RDLDVLIR-MGSEKNFSIGILN 263 (790)
Q Consensus 192 ~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTt-R~~~v~~~-~~~~~~~~l~~L~ 263 (790)
..+.+..+.+.+. .+++-++|+|+++... ..+++...+-... .+.+|++| ....+... ....+.+.+.+++
T Consensus 105 ~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~ 183 (314)
T PRK07399 105 RLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPSPESLLPTIVSRCQIIPFYRLS 183 (314)
T ss_pred cHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECChHhCcHHHHhhceEEecCCCC
Confidence 1223344444443 3567899999987653 2333333332222 33455444 44444444 4556799999999
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHHHHHH
Q 039180 264 EQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIALTIV 305 (790)
Q Consensus 264 ~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 305 (790)
.++..+.+.+....... ......++..++|.|..+...
T Consensus 184 ~~~~~~~L~~~~~~~~~----~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 184 DEQLEQVLKRLGDEEIL----NINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred HHHHHHHHHHhhccccc----hhHHHHHHHHcCCCHHHHHHH
Confidence 99999999876432111 112357889999999755443
No 216
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.58 E-value=0.048 Score=57.14 Aligned_cols=91 Identities=11% Similarity=0.113 Sum_probs=58.2
Q ss_pred CCcEEEEEeCCCCc--cCccccCccCCCCCCCcEEEEEeCC-hhHHhh-hCCCceEEccCCCHHHHHHHHHHHhCCCCCC
Q 039180 206 EKKILLILDNTWKS--LDLGTIGIPFGVEHRGCKLLFTTRD-LDVLIR-MGSEKNFSIGILNEQEAWRLFKIIAGAYVEN 281 (790)
Q Consensus 206 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 281 (790)
+++-++|+|+++.. .....+...+-.-.+++.+|.+|.+ ..+... .+..+.+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-
Confidence 56678899999766 3344444444444456655555544 555544 4556799999999999998887641 1
Q ss_pred cchHHHHHHHHHHhcCCcHHHHHH
Q 039180 282 RELKSTATSVAKACRGLPIALTIV 305 (790)
Q Consensus 282 ~~~~~~~~~i~~~~~glPlai~~~ 305 (790)
+. .+.++..++|.|.....+
T Consensus 206 ~~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 AD----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred Ch----HHHHHHHcCCCHHHHHHH
Confidence 11 223577889999754433
No 217
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.012 Score=58.67 Aligned_cols=29 Identities=34% Similarity=0.526 Sum_probs=26.1
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhc
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIED 155 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~ 155 (790)
.-++|.++|++|.|||+|++++++...++
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 45889999999999999999999998765
No 218
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.57 E-value=0.013 Score=69.46 Aligned_cols=157 Identities=15% Similarity=0.141 Sum_probs=84.5
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccC----CCE-EEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDEL----YDM-VVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFE 201 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~----f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~ 201 (790)
...-+.++|.+|+||||+|+.++.+...... .+. ++.+..+.-.. +.... ..-...+..+++
T Consensus 207 ~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a------------g~~~~-ge~e~~lk~ii~ 273 (852)
T TIGR03345 207 RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA------------GASVK-GEFENRLKSVID 273 (852)
T ss_pred CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc------------ccccc-hHHHHHHHHHHH
Confidence 3445679999999999999999988643211 122 22333321000 00000 111234445555
Q ss_pred HHH-cCCcEEEEEeCCCCcc-------Ccc---ccCccCCCCCCC-cEEEEEeCChhHHh-------hhCCCceEEccCC
Q 039180 202 RLK-NEKKILLILDNTWKSL-------DLG---TIGIPFGVEHRG-CKLLFTTRDLDVLI-------RMGSEKNFSIGIL 262 (790)
Q Consensus 202 ~l~-~~kr~LlVlDdv~~~~-------~~~---~l~~~~~~~~~g-s~iliTtR~~~v~~-------~~~~~~~~~l~~L 262 (790)
... .+++.+|++|++.... .-+ .+... -..| -++|-||...+... .....+.+.++++
T Consensus 274 e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~---l~~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~ep 350 (852)
T TIGR03345 274 EVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPA---LARGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEP 350 (852)
T ss_pred HHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHH---hhCCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCC
Confidence 543 2468999999986542 111 12222 2233 34555555432211 1234468999999
Q ss_pred CHHHHHHHHHHHhC---CCCCCcchHHHHHHHHHHhcCCc
Q 039180 263 NEQEAWRLFKIIAG---AYVENRELKSTATSVAKACRGLP 299 (790)
Q Consensus 263 ~~~~~~~Lf~~~~~---~~~~~~~~~~~~~~i~~~~~glP 299 (790)
+.+++.++++.... ....-.-..+....+++.+.+..
T Consensus 351 s~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 351 DEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred CHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 99999999755442 11111223456666777776533
No 219
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.56 E-value=0.13 Score=55.47 Aligned_cols=40 Identities=23% Similarity=0.182 Sum_probs=29.9
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeC
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVT 167 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~ 167 (790)
....+|.++|..|+||||++..++...+.++ + .+..|++.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G-~-kV~lV~~D 137 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKG-F-KPCLVCAD 137 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCC-C-CEEEEcCc
Confidence 3468999999999999999999988765432 2 35555543
No 220
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.52 E-value=0.083 Score=57.33 Aligned_cols=86 Identities=23% Similarity=0.304 Sum_probs=51.3
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCCCchh----HHHHHHHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQS-PDIKQIQQEIAEKLGLELSEE----AEFRRASRMFE 201 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~----~~~~~~~~l~~ 201 (790)
...+|.++|..|+||||.|..++......+ + .+.-|++... ....+.++.++++++.+.... +....+....+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g-~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKG-L-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcC-C-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 578999999999999999999998876432 2 3444554432 123444566677766543211 11222333344
Q ss_pred HHHcCCcEEEEEeCC
Q 039180 202 RLKNEKKILLILDNT 216 (790)
Q Consensus 202 ~l~~~kr~LlVlDdv 216 (790)
.... . =++|+|..
T Consensus 172 ~~~~-~-DvVIIDTA 184 (437)
T PRK00771 172 KFKK-A-DVIIVDTA 184 (437)
T ss_pred Hhhc-C-CEEEEECC
Confidence 4432 2 46777776
No 221
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.52 E-value=0.02 Score=57.77 Aligned_cols=89 Identities=26% Similarity=0.326 Sum_probs=56.8
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhc----cCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCch-------------h
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIED----ELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSE-------------E 190 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------------~ 190 (790)
-.+.=|+|.+|+|||+|+.+++-..... +.=..++||+....+....+. +|++..+.+... .
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 4578899999999999999887654322 123469999999999988765 466665543211 1
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEeCCC
Q 039180 191 AEFRRASRMFERLKNEKKILLILDNTW 217 (790)
Q Consensus 191 ~~~~~~~~l~~~l~~~kr~LlVlDdv~ 217 (790)
.-...+..+...+.+.+=-|||+|.+-
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHhhccccceEEEEecchH
Confidence 111223344444444566788888873
No 222
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.49 E-value=0.017 Score=68.00 Aligned_cols=132 Identities=14% Similarity=0.179 Sum_probs=72.6
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccC---C-CEEEE-EEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDEL---Y-DMVVF-SEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFER 202 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~---f-~~~~w-v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~ 202 (790)
..-+.++|++|+|||++|+.++.+.....- + +..+| ++++ . +... .... ..-...+..+++.
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~------~----l~a~--~~~~-g~~e~~l~~i~~~ 269 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMG------S----LLAG--TKYR-GDFEERLKAVVSE 269 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHH------H----Hhhh--cccc-chHHHHHHHHHHH
Confidence 444679999999999999999998643211 1 22333 2211 1 1100 0000 1122345666666
Q ss_pred HHcCCcEEEEEeCCCCccC-----------ccccCccCCCCCCCc-EEEEEeCChhHH------hh-hCCCceEEccCCC
Q 039180 203 LKNEKKILLILDNTWKSLD-----------LGTIGIPFGVEHRGC-KLLFTTRDLDVL------IR-MGSEKNFSIGILN 263 (790)
Q Consensus 203 l~~~kr~LlVlDdv~~~~~-----------~~~l~~~~~~~~~gs-~iliTtR~~~v~------~~-~~~~~~~~l~~L~ 263 (790)
+...++.+|++|++..... -+.+...+ ..|. ++|-+|...+.. .. ....+.+.+++++
T Consensus 270 ~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l---~~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~ 346 (731)
T TIGR02639 270 IEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL---SSGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPS 346 (731)
T ss_pred HhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH---hCCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCC
Confidence 6545679999999864311 11122222 2232 344444432211 11 2234689999999
Q ss_pred HHHHHHHHHHHh
Q 039180 264 EQEAWRLFKIIA 275 (790)
Q Consensus 264 ~~~~~~Lf~~~~ 275 (790)
.++..++++...
T Consensus 347 ~~~~~~il~~~~ 358 (731)
T TIGR02639 347 IEETVKILKGLK 358 (731)
T ss_pred HHHHHHHHHHHH
Confidence 999999998654
No 223
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.065 Score=59.72 Aligned_cols=137 Identities=20% Similarity=0.191 Sum_probs=76.9
Q ss_pred CCceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH
Q 039180 125 DIWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLK 204 (790)
Q Consensus 125 ~~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 204 (790)
.-.-++++++|++|+|||.|++.++.....+ | +.++++.-.|..++.-.=-..+| +.. .++.+.+.
T Consensus 347 ~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk--f---vR~sLGGvrDEAEIRGHRRTYIG------amP---GrIiQ~mk 412 (782)
T COG0466 347 KLKGPILCLVGPPGVGKTSLGKSIAKALGRK--F---VRISLGGVRDEAEIRGHRRTYIG------AMP---GKIIQGMK 412 (782)
T ss_pred cCCCcEEEEECCCCCCchhHHHHHHHHhCCC--E---EEEecCccccHHHhccccccccc------cCC---hHHHHHHH
Confidence 3344899999999999999999999987433 4 45566666665554211111111 111 12333332
Q ss_pred --cCCcEEEEEeCCCCcc------------------CccccCccCCC-CCCCcE-EEEEeCC-hh-HHhh-hCCCceEEc
Q 039180 205 --NEKKILLILDNTWKSL------------------DLGTIGIPFGV-EHRGCK-LLFTTRD-LD-VLIR-MGSEKNFSI 259 (790)
Q Consensus 205 --~~kr~LlVlDdv~~~~------------------~~~~l~~~~~~-~~~gs~-iliTtR~-~~-v~~~-~~~~~~~~l 259 (790)
..+.=+++||.++... +-..+...... .-.=|. +.|||-+ -+ +... ++..+++++
T Consensus 413 ka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~l 492 (782)
T COG0466 413 KAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRL 492 (782)
T ss_pred HhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceeeeee
Confidence 1255689999987541 11111111000 001133 4445544 22 3222 677789999
Q ss_pred cCCCHHHHHHHHHHHh
Q 039180 260 GILNEQEAWRLFKIIA 275 (790)
Q Consensus 260 ~~L~~~~~~~Lf~~~~ 275 (790)
.+.+++|-.++-+++.
T Consensus 493 sgYt~~EKl~IAk~~L 508 (782)
T COG0466 493 SGYTEDEKLEIAKRHL 508 (782)
T ss_pred cCCChHHHHHHHHHhc
Confidence 9999999887766654
No 224
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.45 E-value=0.0025 Score=60.35 Aligned_cols=74 Identities=30% Similarity=0.350 Sum_probs=44.3
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
-.-+.++|..|+|||.||..+++....+ . ..+.|+.+ .+++..+-. ..... ......+.+.+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~-g-~~v~f~~~------~~L~~~l~~----~~~~~----~~~~~~~~l~~-- 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRK-G-YSVLFITA------SDLLDELKQ----SRSDG----SYEELLKRLKR-- 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHT-T---EEEEEH------HHHHHHHHC----CHCCT----THCHHHHHHHT--
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccC-C-cceeEeec------Cceeccccc----ccccc----chhhhcCcccc--
Confidence 3559999999999999999999876543 2 33666654 334444322 21111 12234556653
Q ss_pred cEEEEEeCCCCc
Q 039180 208 KILLILDNTWKS 219 (790)
Q Consensus 208 r~LlVlDdv~~~ 219 (790)
-=||||||+-..
T Consensus 109 ~dlLilDDlG~~ 120 (178)
T PF01695_consen 109 VDLLILDDLGYE 120 (178)
T ss_dssp SSCEEEETCTSS
T ss_pred ccEeccccccee
Confidence 348889998644
No 225
>PRK09183 transposase/IS protein; Provisional
Probab=96.44 E-value=0.0022 Score=64.86 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIE 154 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~ 154 (790)
..+.|+|+.|+|||+||..++.....
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 46779999999999999999876543
No 226
>PRK06526 transposase; Provisional
Probab=96.44 E-value=0.003 Score=63.45 Aligned_cols=99 Identities=21% Similarity=0.157 Sum_probs=52.8
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
.+-+.++|++|+|||+||..+.......+ +. +.|+ +..++...+...... .........+. +
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g-~~-v~f~------t~~~l~~~l~~~~~~--------~~~~~~l~~l~--~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAG-HR-VLFA------TAAQWVARLAAAHHA--------GRLQAELVKLG--R 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCC-Cc-hhhh------hHHHHHHHHHHHHhc--------CcHHHHHHHhc--c
Confidence 44589999999999999999988765432 22 3443 233344444322110 11122233343 3
Q ss_pred cEEEEEeCCCCcc--Ccc--ccCccCCC-CCCCcEEEEEeCCh
Q 039180 208 KILLILDNTWKSL--DLG--TIGIPFGV-EHRGCKLLFTTRDL 245 (790)
Q Consensus 208 r~LlVlDdv~~~~--~~~--~l~~~~~~-~~~gs~iliTtR~~ 245 (790)
.=+||+||+.... .+. .+...+.. ...++ +||||...
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 4589999996431 111 12222211 12234 88888853
No 227
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.42 E-value=0.02 Score=56.93 Aligned_cols=50 Identities=24% Similarity=0.218 Sum_probs=37.1
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhcc----CCCEEEEEEeCCCCCHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDE----LYDMVVFSEVTQSPDIKQIQ 176 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~ 176 (790)
.-.++.|+|.+|+|||++|.+++....... .-..++|++....++...+.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH
Confidence 357899999999999999999887643221 01568899988877765543
No 228
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.41 E-value=0.026 Score=58.58 Aligned_cols=91 Identities=22% Similarity=0.262 Sum_probs=57.7
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhc----cCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCch-------------
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIED----ELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSE------------- 189 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------------- 189 (790)
.-.++-|+|.+|+|||+++.+++-..... ..-..++||+....++...+.+ +++.++.+...
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~~ 173 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYTS 173 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCCH
Confidence 34688899999999999998877543211 1124689999999998888754 56666554221
Q ss_pred hHHHHHHHHHHHHHHcCCcEEEEEeCCCC
Q 039180 190 EAEFRRASRMFERLKNEKKILLILDNTWK 218 (790)
Q Consensus 190 ~~~~~~~~~l~~~l~~~kr~LlVlDdv~~ 218 (790)
+...+.+..+...+.+++--|||+|.+..
T Consensus 174 e~~~~~l~~l~~~i~~~~~~LvVIDSisa 202 (313)
T TIGR02238 174 EHQMELLDYLAAKFSEEPFRLLIVDSIMA 202 (313)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcchH
Confidence 11122333444444444455788888743
No 229
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.40 E-value=0.015 Score=55.28 Aligned_cols=38 Identities=29% Similarity=0.400 Sum_probs=29.7
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEE
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSE 165 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~ 165 (790)
....+|.+.|+.|+||||+|+.++...... +..++++.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~--~~~~~~~~ 42 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLK--YSNVIYLD 42 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEe
Confidence 345689999999999999999999987543 55555553
No 230
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.023 Score=62.68 Aligned_cols=157 Identities=18% Similarity=0.158 Sum_probs=87.3
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCC--CHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcC
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSP--DIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNE 206 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 206 (790)
+-|.|.|..|+|||+||+++++... +.+.-.+..++++... ..+++++.+. .++......
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~-----------------~vfse~~~~ 493 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLN-----------------NVFSEALWY 493 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHH-----------------HHHHHHHhh
Confidence 4478999999999999999999876 5555667777776532 2233222221 222222223
Q ss_pred CcEEEEEeCCCCcc--------Ccc-----------ccCccCCCCCCCcE--EEEEeCChhHHhh-hC----CCceEEcc
Q 039180 207 KKILLILDNTWKSL--------DLG-----------TIGIPFGVEHRGCK--LLFTTRDLDVLIR-MG----SEKNFSIG 260 (790)
Q Consensus 207 kr~LlVlDdv~~~~--------~~~-----------~l~~~~~~~~~gs~--iliTtR~~~v~~~-~~----~~~~~~l~ 260 (790)
.+-+|||||++... +|. ++...+ ...+.+ +|.|.....-... +. ...+..+.
T Consensus 494 ~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y--~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ 571 (952)
T KOG0735|consen 494 APSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIY--LKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALP 571 (952)
T ss_pred CCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHH--HccCcEEEEEEechhhhhcChhhcCccceEEEEecC
Confidence 67899999986541 121 111111 233343 4445544322222 11 22477788
Q ss_pred CCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcC-CcHHHHHHH
Q 039180 261 ILNEQEAWRLFKIIAGAYVENRELKSTATSVAKACRG-LPIALTIVV 306 (790)
Q Consensus 261 ~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~g-lPlai~~~~ 306 (790)
.+...+-.++++....... .....+...-+..+|+| .|..+.++.
T Consensus 572 ap~~~~R~~IL~~~~s~~~-~~~~~~dLd~ls~~TEGy~~~DL~ifV 617 (952)
T KOG0735|consen 572 APAVTRRKEILTTIFSKNL-SDITMDDLDFLSVKTEGYLATDLVIFV 617 (952)
T ss_pred CcchhHHHHHHHHHHHhhh-hhhhhHHHHHHHHhcCCccchhHHHHH
Confidence 8888887777766553222 11122233448888887 565555544
No 231
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.36 E-value=0.058 Score=63.35 Aligned_cols=135 Identities=16% Similarity=0.182 Sum_probs=71.7
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHc-
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKN- 205 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~- 205 (790)
.-.++.++|++|+||||+|+.++..... .| +-++.+...+..++...-....+.. + . .+.+.+..
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~--~~---~~i~~~~~~d~~~i~g~~~~~~g~~-~-----G---~~~~~l~~~ 413 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQSIAKATGR--KY---VRMALGGVRDEAEIRGHRRTYIGSM-P-----G---KLIQKMAKV 413 (784)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCC--CE---EEEEcCCCCCHHHhccchhccCCCC-C-----c---HHHHHHHhc
Confidence 4568999999999999999999987532 23 2344444444433222111111111 1 0 11112211
Q ss_pred -CCcEEEEEeCCCCccC------ccccCccCC---------------CCCCCcEEEEEeCChhHHhh-hCCCceEEccCC
Q 039180 206 -EKKILLILDNTWKSLD------LGTIGIPFG---------------VEHRGCKLLFTTRDLDVLIR-MGSEKNFSIGIL 262 (790)
Q Consensus 206 -~kr~LlVlDdv~~~~~------~~~l~~~~~---------------~~~~gs~iliTtR~~~v~~~-~~~~~~~~l~~L 262 (790)
...-+++||+++.... .+.+...+. ..-.+.-+|.|+.+..+... .+....+.+.++
T Consensus 414 ~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~aLl~R~~ii~~~~~ 493 (784)
T PRK10787 414 GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGY 493 (784)
T ss_pred CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHHHhcceeeeecCCC
Confidence 1234788999865421 011111111 11123334556655433333 445568999999
Q ss_pred CHHHHHHHHHHHh
Q 039180 263 NEQEAWRLFKIIA 275 (790)
Q Consensus 263 ~~~~~~~Lf~~~~ 275 (790)
+.++-.++.+++.
T Consensus 494 t~eek~~Ia~~~L 506 (784)
T PRK10787 494 TEDEKLNIAKRHL 506 (784)
T ss_pred CHHHHHHHHHHhh
Confidence 9999888877765
No 232
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.34 E-value=0.0085 Score=67.75 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.+++.++|+.|+||||+++.++...
T Consensus 110 ~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 110 KRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999765
No 233
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.33 E-value=0.037 Score=66.03 Aligned_cols=134 Identities=18% Similarity=0.222 Sum_probs=72.7
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccC----CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDEL----YDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERL 203 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l 203 (790)
.+-+.++|++|+|||++|..++........ -+..+|. + +...+. . +..... .-.+.+..+++.+
T Consensus 200 ~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~----a--g~~~~g-e~e~rl~~i~~~~ 267 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL----A--GTKYRG-EFEERLKRIFDEI 267 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh----c--cCCCcc-HHHHHHHHHHHHH
Confidence 334579999999999999999988643210 1223332 1 111111 1 111111 2233566677666
Q ss_pred HcCCcEEEEEeCCCCccC---------ccccCccCCCCCCCcEEEEEeCChhHHh-------hhCCCceEEccCCCHHHH
Q 039180 204 KNEKKILLILDNTWKSLD---------LGTIGIPFGVEHRGCKLLFTTRDLDVLI-------RMGSEKNFSIGILNEQEA 267 (790)
Q Consensus 204 ~~~kr~LlVlDdv~~~~~---------~~~l~~~~~~~~~gs~iliTtR~~~v~~-------~~~~~~~~~l~~L~~~~~ 267 (790)
...++.+|++|++..... ...+..+....+ .-++|-+|...+... .....+.+.+...+.++.
T Consensus 268 ~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~ 346 (821)
T CHL00095 268 QENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEET 346 (821)
T ss_pred HhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHH
Confidence 655679999999853311 111111111112 234555555443211 123345788899999998
Q ss_pred HHHHHHH
Q 039180 268 WRLFKII 274 (790)
Q Consensus 268 ~~Lf~~~ 274 (790)
..+++..
T Consensus 347 ~aILr~l 353 (821)
T CHL00095 347 IEILFGL 353 (821)
T ss_pred HHHHHHH
Confidence 8887653
No 234
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.32 E-value=0.084 Score=55.45 Aligned_cols=150 Identities=11% Similarity=0.052 Sum_probs=88.7
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhc--------------------cCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIED--------------------ELYDMVVFSEVTQSPDIKQIQQEIAEKLGLEL 187 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~--------------------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 187 (790)
.+-+.++|+.|+||+++|..++...--. .|-|. .++.-....
T Consensus 24 ~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~-~~i~p~~~~----------------- 85 (334)
T PRK07993 24 HHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLTPEKGK----------------- 85 (334)
T ss_pred ceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCE-EEEeccccc-----------------
Confidence 4678899999999999999988775211 12232 222110000
Q ss_pred chhHHHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--CccccCccCCCCCCCcEEEEEeCC-hhHHhh-hCCCceEEc
Q 039180 188 SEEAEFRRASRMFERLK----NEKKILLILDNTWKSL--DLGTIGIPFGVEHRGCKLLFTTRD-LDVLIR-MGSEKNFSI 259 (790)
Q Consensus 188 ~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR~-~~v~~~-~~~~~~~~l 259 (790)
..-..+.+..+.+.+. .+++-++|+|+++... ....+...+-....++.+|.+|.+ ..+... .+..+.+.+
T Consensus 86 -~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~ 164 (334)
T PRK07993 86 -SSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYL 164 (334)
T ss_pred -ccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccC
Confidence 0001122333333332 3677899999997662 333343444333445665555554 555544 555678999
Q ss_pred cCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHHH
Q 039180 260 GILNEQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIAL 302 (790)
Q Consensus 260 ~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 302 (790)
.+++.+++.+.+....+ . ..+.+..++..++|.|...
T Consensus 165 ~~~~~~~~~~~L~~~~~---~---~~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 165 APPPEQYALTWLSREVT---M---SQDALLAALRLSAGAPGAA 201 (334)
T ss_pred CCCCHHHHHHHHHHccC---C---CHHHHHHHHHHcCCCHHHH
Confidence 99999999888765321 1 1233667899999999643
No 235
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.29 E-value=0.021 Score=59.94 Aligned_cols=89 Identities=20% Similarity=0.270 Sum_probs=50.6
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHc
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSP-DIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKN 205 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 205 (790)
..++|+++|++|+||||++..++.....++ ..+..+++.... ...+-++..++.++.+.....+...+....+.+.+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~G--kkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcC--CcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 458999999999999999999998765332 235556654432 23333444455555553322222233344444442
Q ss_pred -CCcEEEEEeCCC
Q 039180 206 -EKKILLILDNTW 217 (790)
Q Consensus 206 -~kr~LlVlDdv~ 217 (790)
.+.=++++|-.-
T Consensus 318 ~~~~DvVLIDTaG 330 (436)
T PRK11889 318 EARVDYILIDTAG 330 (436)
T ss_pred ccCCCEEEEeCcc
Confidence 112466777653
No 236
>PRK12377 putative replication protein; Provisional
Probab=96.27 E-value=0.014 Score=58.12 Aligned_cols=73 Identities=21% Similarity=0.265 Sum_probs=46.8
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCCc
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEKK 208 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 208 (790)
.-+.++|..|+|||.||.++++....+ ...++++++. ++...+-...... .....+.+.+. +-
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~------~l~~~l~~~~~~~-------~~~~~~l~~l~--~~ 164 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTVP------DVMSRLHESYDNG-------QSGEKFLQELC--KV 164 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEHH------HHHHHHHHHHhcc-------chHHHHHHHhc--CC
Confidence 568999999999999999999987644 3335666554 3444443332111 01223455554 45
Q ss_pred EEEEEeCCCC
Q 039180 209 ILLILDNTWK 218 (790)
Q Consensus 209 ~LlVlDdv~~ 218 (790)
=||||||+..
T Consensus 165 dLLiIDDlg~ 174 (248)
T PRK12377 165 DLLVLDEIGI 174 (248)
T ss_pred CEEEEcCCCC
Confidence 6999999943
No 237
>PRK10867 signal recognition particle protein; Provisional
Probab=96.26 E-value=0.24 Score=53.66 Aligned_cols=41 Identities=22% Similarity=0.256 Sum_probs=29.4
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeC
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVT 167 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~ 167 (790)
....+|.++|.+|+||||.+..++.....+.. ..+..|++.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G-~kV~lV~~D 138 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKK-KKVLLVAAD 138 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcC-CcEEEEEcc
Confidence 34689999999999999999988887654311 234445544
No 238
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.25 E-value=0.023 Score=67.38 Aligned_cols=88 Identities=14% Similarity=0.169 Sum_probs=47.6
Q ss_pred CCceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH
Q 039180 125 DIWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLK 204 (790)
Q Consensus 125 ~~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 204 (790)
+....++.++|+.|+|||.+|+.++...... ....+-++++...... .+.+-+|.+.... ....-..+.+.++
T Consensus 593 ~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~--~~~~~~~dmse~~~~~----~~~~l~g~~~gyv-g~~~~g~L~~~v~ 665 (852)
T TIGR03345 593 RKPLGVFLLVGPSGVGKTETALALAELLYGG--EQNLITINMSEFQEAH----TVSRLKGSPPGYV-GYGEGGVLTEAVR 665 (852)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHhCC--CcceEEEeHHHhhhhh----hhccccCCCCCcc-cccccchHHHHHH
Confidence 3456689999999999999999998876322 2233444433321111 1111122211100 0001112334455
Q ss_pred cCCcEEEEEeCCCCc
Q 039180 205 NEKKILLILDNTWKS 219 (790)
Q Consensus 205 ~~kr~LlVlDdv~~~ 219 (790)
+...-+|+||++...
T Consensus 666 ~~p~svvllDEieka 680 (852)
T TIGR03345 666 RKPYSVVLLDEVEKA 680 (852)
T ss_pred hCCCcEEEEechhhc
Confidence 456789999999754
No 239
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.25 E-value=0.016 Score=59.90 Aligned_cols=86 Identities=20% Similarity=0.220 Sum_probs=53.8
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCch------hHHHHHHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSE------EAEFRRASRMF 200 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~ 200 (790)
.-+++-|+|++|+||||||.+++...... -..++||+....++.. .+++++.+... ....+.+..+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 34689999999999999999987765432 3557899887766653 35555543211 11122223333
Q ss_pred HHHHcCCcEEEEEeCCCCc
Q 039180 201 ERLKNEKKILLILDNTWKS 219 (790)
Q Consensus 201 ~~l~~~kr~LlVlDdv~~~ 219 (790)
..+.++.--+||+|.+...
T Consensus 127 ~li~~~~~~lIVIDSv~al 145 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVAAL 145 (321)
T ss_pred HHhhccCCcEEEEcchhhh
Confidence 3334456679999998543
No 240
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.25 E-value=0.03 Score=55.65 Aligned_cols=45 Identities=22% Similarity=0.349 Sum_probs=35.5
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQI 175 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 175 (790)
-.++.|+|.+|+|||++|.+++...... -..++|++.. .++...+
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC-CCCHHHH
Confidence 4689999999999999999998876433 4678999887 5555544
No 241
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.24 E-value=0.035 Score=58.15 Aligned_cols=60 Identities=20% Similarity=0.190 Sum_probs=43.5
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhh----ccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIE----DELYDMVVFSEVTQSPDIKQIQQEIAEKLGLE 186 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 186 (790)
..-.++-|+|.+|+|||+|+.+++-.... ...-..++||+....|...++.+ +++.++.+
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 34567789999999999999988744321 11124689999999999888655 56666554
No 242
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.085 Score=55.73 Aligned_cols=152 Identities=16% Similarity=0.167 Sum_probs=83.6
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCCc
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEKK 208 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 208 (790)
+=-.++|++|.|||+++.++++.+. |+ +.-+..+...+-.+ ++.++.. - ..+
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~----yd-IydLeLt~v~~n~d-Lr~LL~~--------------------t--~~k 287 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN----YD-IYDLELTEVKLDSD-LRHLLLA--------------------T--PNK 287 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC----Cc-eEEeeeccccCcHH-HHHHHHh--------------------C--CCC
Confidence 3357999999999999999999874 54 23233322222111 2222222 1 245
Q ss_pred EEEEEeCCCCccCccc--------------------cCccCC--CCCC-CcE-EEEEeCChhHHhh--hC---CCceEEc
Q 039180 209 ILLILDNTWKSLDLGT--------------------IGIPFG--VEHR-GCK-LLFTTRDLDVLIR--MG---SEKNFSI 259 (790)
Q Consensus 209 ~LlVlDdv~~~~~~~~--------------------l~~~~~--~~~~-gs~-iliTtR~~~v~~~--~~---~~~~~~l 259 (790)
-+||+.|++...+... +...+. +.++ +-| ||+||...+-.+. +. .+..+.+
T Consensus 288 SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~m 367 (457)
T KOG0743|consen 288 SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYM 367 (457)
T ss_pred cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEc
Confidence 7888888875411100 111110 1222 234 5557776554443 22 2347888
Q ss_pred cCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHHHHHHHH-HHhcC
Q 039180 260 GILNEQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIALTIVVK-ALRNK 312 (790)
Q Consensus 260 ~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~-~l~~~ 312 (790)
+--+.+....|+.++.+...+. .+..+|.+...|.-+.=..++. +|..+
T Consensus 368 gyCtf~~fK~La~nYL~~~~~h----~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 368 GYCTFEAFKTLASNYLGIEEDH----RLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred CCCCHHHHHHHHHHhcCCCCCc----chhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 9999999999999988643322 3445555555555444444444 44444
No 243
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.23 E-value=0.0016 Score=63.24 Aligned_cols=88 Identities=23% Similarity=0.320 Sum_probs=60.4
Q ss_pred CChhhhhccccceeeccCccccccchhhhhccCcccEEeccCC--CCc-ccchhhhcccccceecCCcccccc---ccCc
Q 039180 516 LPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRS--DIV-QLPKALGELTKLRLSDLTDCFHLK---VIAP 589 (790)
Q Consensus 516 lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~--~l~-~lp~~l~~l~~L~~L~l~~~~~l~---~~~~ 589 (790)
+....-.+..|+.|++.++.++. ...+-.|++|++|.++.| .+. .++....++++|++|++++| +++ .+++
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~p 111 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRP 111 (260)
T ss_pred cccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccch
Confidence 33334455667777777777665 345567888999999988 444 56665667788999999887 443 3333
Q ss_pred hhhccccccceEecccCCc
Q 039180 590 NVISSLTRLEELYMGNCPI 608 (790)
Q Consensus 590 ~~l~~l~~L~~L~l~~~~~ 608 (790)
+..+.+|..|++++|..
T Consensus 112 --l~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 112 --LKELENLKSLDLFNCSV 128 (260)
T ss_pred --hhhhcchhhhhcccCCc
Confidence 55677788888887764
No 244
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.23 E-value=0.0061 Score=54.57 Aligned_cols=29 Identities=38% Similarity=0.403 Sum_probs=25.4
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhcc
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDE 156 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~ 156 (790)
..-|+|.|++|+||||+++.+.+..+.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g 33 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKG 33 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcC
Confidence 45689999999999999999999987654
No 245
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.23 E-value=0.011 Score=65.54 Aligned_cols=76 Identities=21% Similarity=0.266 Sum_probs=55.1
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHc
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKN 205 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 205 (790)
..-+|+.++|++|.||||||.-++.+. .| .++-|++|+..+...+-..|...+....... .+
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~~s~l~-------------ad 385 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQNHSVLD-------------AD 385 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhhccccc-------------cC
Confidence 457899999999999999999998764 13 4888999999888877777766554322110 02
Q ss_pred CCcEEEEEeCCCCc
Q 039180 206 EKKILLILDNTWKS 219 (790)
Q Consensus 206 ~kr~LlVlDdv~~~ 219 (790)
+++.-+|+|.++-.
T Consensus 386 srP~CLViDEIDGa 399 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGA 399 (877)
T ss_pred CCcceEEEecccCC
Confidence 46677888888654
No 246
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.22 E-value=0.029 Score=52.32 Aligned_cols=40 Identities=30% Similarity=0.412 Sum_probs=31.5
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCC
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPD 171 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 171 (790)
++.|+|.+|+||||++..++..... .-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECCcchH
Confidence 4789999999999999999887644 245678888776544
No 247
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.19 E-value=0.053 Score=56.70 Aligned_cols=87 Identities=8% Similarity=0.037 Sum_probs=47.9
Q ss_pred CCcEEEEEeCCCCcc--CccccCccCCCCCCCcEEEEEeCCh-hHHhh-hCCCceEEccCCCHHHHHHHHHHHhCCCCCC
Q 039180 206 EKKILLILDNTWKSL--DLGTIGIPFGVEHRGCKLLFTTRDL-DVLIR-MGSEKNFSIGILNEQEAWRLFKIIAGAYVEN 281 (790)
Q Consensus 206 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 281 (790)
+++-++|+|++.... .-..+...+-....+..+|++|.+. .+... ......+.+.+++.+++.+.+.... ..
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~~ 187 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG----VA 187 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC----CC
Confidence 344555667776542 2222222222222345567777663 44433 3445789999999999988876531 11
Q ss_pred cchHHHHHHHHHHhcCCcHH
Q 039180 282 RELKSTATSVAKACRGLPIA 301 (790)
Q Consensus 282 ~~~~~~~~~i~~~~~glPla 301 (790)
.. . ..+..++|.|+.
T Consensus 188 ~~-~----~~l~~~~g~p~~ 202 (325)
T PRK08699 188 EP-E----ERLAFHSGAPLF 202 (325)
T ss_pred cH-H----HHHHHhCCChhh
Confidence 11 1 123568898854
No 248
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.18 E-value=0.12 Score=61.61 Aligned_cols=86 Identities=15% Similarity=0.241 Sum_probs=47.0
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcC
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNE 206 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 206 (790)
....+.++|+.|+|||++|+.+++..-.. -...+-++.+.-.....+ .+-++.+.. ....+....+.+.+...
T Consensus 538 p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~~----~~l~g~~~g-yvg~~~~~~l~~~~~~~ 610 (821)
T CHL00095 538 PIASFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHTV----SKLIGSPPG-YVGYNEGGQLTEAVRKK 610 (821)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhccccccH----HHhcCCCCc-ccCcCccchHHHHHHhC
Confidence 34567899999999999999999876322 123455555543222111 111222110 00001112344555544
Q ss_pred CcEEEEEeCCCCc
Q 039180 207 KKILLILDNTWKS 219 (790)
Q Consensus 207 kr~LlVlDdv~~~ 219 (790)
..-+++||+++..
T Consensus 611 p~~VvllDeieka 623 (821)
T CHL00095 611 PYTVVLFDEIEKA 623 (821)
T ss_pred CCeEEEECChhhC
Confidence 4579999999765
No 249
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.14 E-value=0.13 Score=55.63 Aligned_cols=90 Identities=18% Similarity=0.167 Sum_probs=48.4
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCC-HHHHHHHHHHHhCCCCch----hHHHHHHHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPD-IKQIQQEIAEKLGLELSE----EAEFRRASRMFE 201 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~----~~~~~~~~~l~~ 201 (790)
...++.++|..|+||||.|..++.....+..+ .+.-|++..... ..+-++..++..+.+... .+.........+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 46899999999999999999998876422222 345555543221 233344445555543211 111222333344
Q ss_pred HHHcCCcEEEEEeCCC
Q 039180 202 RLKNEKKILLILDNTW 217 (790)
Q Consensus 202 ~l~~~kr~LlVlDdv~ 217 (790)
.......=++|+|-.-
T Consensus 177 ~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 177 YAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHhcCCCEEEEeCCC
Confidence 4433222267777653
No 250
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.10 E-value=0.052 Score=54.54 Aligned_cols=90 Identities=24% Similarity=0.362 Sum_probs=56.1
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC-------Cchh-HHH-----
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSP-DIKQIQQEIAEKLGLE-------LSEE-AEF----- 193 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~-~~~----- 193 (790)
=.-++|.|..|+|||||++.+++..+.+ +-+.++++-+.+.. .+.++.+++...-... ..++ ...
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~-~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKA-HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 3457899999999999999999987643 22456677776654 4556666655432111 1111 111
Q ss_pred HHHHHHHHHHH-c-CCcEEEEEeCCCC
Q 039180 194 RRASRMFERLK-N-EKKILLILDNTWK 218 (790)
Q Consensus 194 ~~~~~l~~~l~-~-~kr~LlVlDdv~~ 218 (790)
.....+.+.+. + ++.+|+++||+..
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 12234555554 3 7999999999844
No 251
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.09 E-value=0.021 Score=57.49 Aligned_cols=76 Identities=20% Similarity=0.265 Sum_probs=48.1
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcC
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNE 206 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 206 (790)
...=+.++|.+|+|||.||.++.+... +..+ .+.++++ .++.+++....... .....+.+.+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~~------~el~~~Lk~~~~~~-------~~~~~l~~~l~~- 167 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFITA------PDLLSKLKAAFDEG-------RLEEKLLRELKK- 167 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEEH------HHHHHHHHHHHhcC-------chHHHHHHHhhc-
Confidence 355688999999999999999999987 4333 3555543 34555555444320 112234444442
Q ss_pred CcEEEEEeCCCCc
Q 039180 207 KKILLILDNTWKS 219 (790)
Q Consensus 207 kr~LlVlDdv~~~ 219 (790)
-=||||||+-..
T Consensus 168 -~dlLIiDDlG~~ 179 (254)
T COG1484 168 -VDLLIIDDIGYE 179 (254)
T ss_pred -CCEEEEecccCc
Confidence 359999998543
No 252
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.09 E-value=0.02 Score=59.25 Aligned_cols=85 Identities=24% Similarity=0.238 Sum_probs=53.0
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCch------hHHHHHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSE------EAEFRRASRMFE 201 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~~ 201 (790)
-+++-|+|++|+||||||.+++...... -..++||+....++.. .+++++.+... ....+....+..
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~ 127 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADS 127 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHH
Confidence 4688899999999999999988765332 3568899887777653 34444443111 111122222222
Q ss_pred HHHcCCcEEEEEeCCCCc
Q 039180 202 RLKNEKKILLILDNTWKS 219 (790)
Q Consensus 202 ~l~~~kr~LlVlDdv~~~ 219 (790)
.+.++.--+||+|.|...
T Consensus 128 li~s~~~~lIVIDSvaal 145 (325)
T cd00983 128 LVRSGAVDLIVVDSVAAL 145 (325)
T ss_pred HHhccCCCEEEEcchHhh
Confidence 233456679999998543
No 253
>PRK09354 recA recombinase A; Provisional
Probab=96.08 E-value=0.023 Score=59.22 Aligned_cols=85 Identities=20% Similarity=0.230 Sum_probs=54.4
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCch------hHHHHHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSE------EAEFRRASRMFE 201 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~~ 201 (790)
-+++-|+|+.|+||||||.+++...... -..++||+....++.. .++.++.+... ....+.+..+..
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~ 132 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADT 132 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 4688899999999999999988665332 4568899988877753 45555543211 111222222223
Q ss_pred HHHcCCcEEEEEeCCCCc
Q 039180 202 RLKNEKKILLILDNTWKS 219 (790)
Q Consensus 202 ~l~~~kr~LlVlDdv~~~ 219 (790)
.+.++.--+||+|-|...
T Consensus 133 li~s~~~~lIVIDSvaaL 150 (349)
T PRK09354 133 LVRSGAVDLIVVDSVAAL 150 (349)
T ss_pred HhhcCCCCEEEEeChhhh
Confidence 334456679999998543
No 254
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.07 E-value=0.0094 Score=62.18 Aligned_cols=100 Identities=20% Similarity=0.242 Sum_probs=55.7
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCCc
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEKK 208 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 208 (790)
.-+.++|..|+|||.||.++++....++ ..++++++.+ +...+...-. ... .+ .....+.+.+ -
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g--~~V~y~t~~~------l~~~l~~~~~-~~~--~~---~~~~~~~l~~--~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRG--KSVIYRTADE------LIEILREIRF-NND--KE---LEEVYDLLIN--C 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCC--CeEEEEEHHH------HHHHHHHHHh-ccc--hh---HHHHHHHhcc--C
Confidence 7799999999999999999999875442 3467776543 3333322110 100 01 1111444543 2
Q ss_pred EEEEEeCCCCc--cCcc--ccCccCCCC-CCCcEEEEEeCC
Q 039180 209 ILLILDNTWKS--LDLG--TIGIPFGVE-HRGCKLLFTTRD 244 (790)
Q Consensus 209 ~LlVlDdv~~~--~~~~--~l~~~~~~~-~~gs~iliTtR~ 244 (790)
=||||||+... ..|. .+...+... ..+..+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 48999999544 2222 222222211 224458888875
No 255
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.06 E-value=0.0087 Score=61.94 Aligned_cols=100 Identities=14% Similarity=0.141 Sum_probs=60.3
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcC
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNE 206 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 206 (790)
..+-+.++|..|+|||.||.++++....+ .+ .+.+++++ ++..++....... ......+.+.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~-g~-~v~~~~~~------~l~~~lk~~~~~~--------~~~~~l~~l~-- 216 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKK-GV-SSTLLHFP------EFIRELKNSISDG--------SVKEKIDAVK-- 216 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc-CC-CEEEEEHH------HHHHHHHHHHhcC--------cHHHHHHHhc--
Confidence 34678999999999999999999997643 23 35566553 3445554443211 1233445554
Q ss_pred CcEEEEEeCCCCc--cCccc--cCccC-CCC-CCCcEEEEEeCC
Q 039180 207 KKILLILDNTWKS--LDLGT--IGIPF-GVE-HRGCKLLFTTRD 244 (790)
Q Consensus 207 kr~LlVlDdv~~~--~~~~~--l~~~~-~~~-~~gs~iliTtR~ 244 (790)
+-=||||||+... .+|.. +...+ ... ..+-.+|+||..
T Consensus 217 ~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 217 EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 3469999999543 45542 32222 222 234558888874
No 256
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.06 E-value=0.046 Score=64.51 Aligned_cols=150 Identities=16% Similarity=0.192 Sum_probs=83.8
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
.+-|.++|++|+|||++|+.+++.... .| +.+..+ +++.. +..+ ....+..+++......
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~~--~f---i~v~~~----------~l~~~----~vGe-se~~i~~~f~~A~~~~ 546 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESGA--NF---IAVRGP----------EILSK----WVGE-SEKAIREIFRKARQAA 546 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCC--CE---EEEehH----------HHhhc----ccCc-HHHHHHHHHHHHHhcC
Confidence 344889999999999999999987532 12 222211 11111 1111 1234556666666567
Q ss_pred cEEEEEeCCCCccC--------------ccccCccCCC--CCCCcEEEEEeCChhHHhh--h---CCCceEEccCCCHHH
Q 039180 208 KILLILDNTWKSLD--------------LGTIGIPFGV--EHRGCKLLFTTRDLDVLIR--M---GSEKNFSIGILNEQE 266 (790)
Q Consensus 208 r~LlVlDdv~~~~~--------------~~~l~~~~~~--~~~gs~iliTtR~~~v~~~--~---~~~~~~~l~~L~~~~ 266 (790)
+.+|++|+++.... ...+...+.. ...+--||.||...+..+. . .-...+.+...+.++
T Consensus 547 p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~ 626 (733)
T TIGR01243 547 PAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEA 626 (733)
T ss_pred CEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHH
Confidence 79999999865310 0111111111 1223445556655443332 1 234578889999999
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCc
Q 039180 267 AWRLFKIIAGAYVENRELKSTATSVAKACRGLP 299 (790)
Q Consensus 267 ~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 299 (790)
-.++|+.+.......+.. ....+++.+.|.-
T Consensus 627 R~~i~~~~~~~~~~~~~~--~l~~la~~t~g~s 657 (733)
T TIGR01243 627 RKEIFKIHTRSMPLAEDV--DLEELAEMTEGYT 657 (733)
T ss_pred HHHHHHHHhcCCCCCccC--CHHHHHHHcCCCC
Confidence 999998766533222211 1455777777754
No 257
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.05 E-value=0.013 Score=52.33 Aligned_cols=108 Identities=17% Similarity=0.293 Sum_probs=56.9
Q ss_pred CChhhhccCCceEEEEecCccccCC-ChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccch-hhhc
Q 039180 492 IPENFFKGVKKLRVVALVKMLLSSL-PSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPK-ALGE 569 (790)
Q Consensus 492 lp~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~-~l~~ 569 (790)
++...|.++++|+.+.+.. .+..+ ...|.++.+|+.+.+..+ +..+....+..+.+|+.+.+.. .+..++. .+..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 5566677888888888764 45555 345666767888877664 5555455566776778887765 4444443 3455
Q ss_pred ccccceecCCccccccccCchhhccccccceEeccc
Q 039180 570 LTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGN 605 (790)
Q Consensus 570 l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 605 (790)
+++|+.+.+..+ +..++...+.++ +|+.+.+..
T Consensus 80 ~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 80 CTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 777777777653 455555656666 777776654
No 258
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.03 E-value=0.026 Score=55.59 Aligned_cols=41 Identities=20% Similarity=0.096 Sum_probs=28.7
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCC
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSP 170 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 170 (790)
+|+|.|.+|+||||+|+.+.........=..+..++...-.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 58999999999999999999887531111234556555544
No 259
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.98 E-value=0.047 Score=56.91 Aligned_cols=59 Identities=20% Similarity=0.206 Sum_probs=41.8
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhc----cCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIED----ELYDMVVFSEVTQSPDIKQIQQEIAEKLGLE 186 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 186 (790)
.-.++.|+|.+|+||||++..++...... ..-..++|++....+...++ .++++.++..
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~ 157 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLN 157 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCC
Confidence 46889999999999999999887642211 11235799999888887764 4455655543
No 260
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.96 E-value=0.035 Score=65.35 Aligned_cols=83 Identities=18% Similarity=0.217 Sum_probs=47.6
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcC
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNE 206 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 206 (790)
...++.++|+.|+|||++|+.++... +...+.++.++...... +.+.++.+.... ..+....+.+.+...
T Consensus 483 p~~~~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~~----~~~lig~~~gyv-g~~~~~~l~~~~~~~ 552 (731)
T TIGR02639 483 PVGSFLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKHT----VSRLIGAPPGYV-GFEQGGLLTEAVRKH 552 (731)
T ss_pred CceeEEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCchhhhccc----HHHHhcCCCCCc-ccchhhHHHHHHHhC
Confidence 35578999999999999999999876 23356666655322111 122222211100 011112234444444
Q ss_pred CcEEEEEeCCCCc
Q 039180 207 KKILLILDNTWKS 219 (790)
Q Consensus 207 kr~LlVlDdv~~~ 219 (790)
..-+++||+++..
T Consensus 553 p~~VvllDEieka 565 (731)
T TIGR02639 553 PHCVLLLDEIEKA 565 (731)
T ss_pred CCeEEEEechhhc
Confidence 5579999999765
No 261
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.072 Score=57.99 Aligned_cols=130 Identities=22% Similarity=0.294 Sum_probs=77.4
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
..=|.++|++|.|||-||++|++..... | ++|..+ +++... ..+ ....+..++++-+...
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~N--F-----isVKGP--------ELlNkY----VGE-SErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGAN--F-----ISVKGP--------ELLNKY----VGE-SERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCc--e-----EeecCH--------HHHHHH----hhh-HHHHHHHHHHHhhcCC
Confidence 3447899999999999999999986432 3 333321 111110 011 1234566777777778
Q ss_pred cEEEEEeCCCCcc-------C------ccccCccCCC--CCCCcEEEEEeCChhHHhh--hC---CCceEEccCCCHHHH
Q 039180 208 KILLILDNTWKSL-------D------LGTIGIPFGV--EHRGCKLLFTTRDLDVLIR--MG---SEKNFSIGILNEQEA 267 (790)
Q Consensus 208 r~LlVlDdv~~~~-------~------~~~l~~~~~~--~~~gs~iliTtR~~~v~~~--~~---~~~~~~l~~L~~~~~ 267 (790)
+++|.||.++... . ...+..-+.. ...|--||-.|.-.++.+. +. -+..+.++.-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 9999999997651 1 1111111211 2234445555544443333 11 235777888889999
Q ss_pred HHHHHHHhCC
Q 039180 268 WRLFKIIAGA 277 (790)
Q Consensus 268 ~~Lf~~~~~~ 277 (790)
..+++.....
T Consensus 685 ~~ILK~~tkn 694 (802)
T KOG0733|consen 685 VAILKTITKN 694 (802)
T ss_pred HHHHHHHhcc
Confidence 9999888863
No 262
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.94 E-value=0.086 Score=61.82 Aligned_cols=182 Identities=16% Similarity=0.162 Sum_probs=88.4
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHh-hhccCCCEEEEEEeCCCC--C-HHHH------HHHHHHHhCCCCchhHHHHH
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRA-IEDELYDMVVFSEVTQSP--D-IKQI------QQEIAEKLGLELSEEAEFRR 195 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~-~~~~~f~~~~wv~~~~~~--~-~~~~------~~~i~~~l~~~~~~~~~~~~ 195 (790)
.+.++++|+|+.|.||||+.+.+.-.. ..+.. .+|.+.... . ...+ -+.+.+.+.. -......
T Consensus 320 ~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G----~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LSt---fS~~m~~ 392 (771)
T TIGR01069 320 FEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG----IPIPANEHSEIPYFEEIFADIGDEQSIEQNLST---FSGHMKN 392 (771)
T ss_pred CCceEEEEECCCCCCchHHHHHHHHHHHHHHhC----CCccCCccccccchhheeeecChHhHHhhhhhH---HHHHHHH
Confidence 345789999999999999999887651 11111 111111100 0 0000 0111111100 0111122
Q ss_pred HHHHHHHHHcCCcEEEEEeCCCCccC---cccc----CccCCCCCCCcEEEEEeCChhHHhhhCCCc---eEEccCCCHH
Q 039180 196 ASRMFERLKNEKKILLILDNTWKSLD---LGTI----GIPFGVEHRGCKLLFTTRDLDVLIRMGSEK---NFSIGILNEQ 265 (790)
Q Consensus 196 ~~~l~~~l~~~kr~LlVlDdv~~~~~---~~~l----~~~~~~~~~gs~iliTtR~~~v~~~~~~~~---~~~l~~L~~~ 265 (790)
+..+...+ ..+-|+++|++-...+ ...+ ...+ ...|+.+|+||...++........ ...+. ++.+
T Consensus 393 ~~~il~~~--~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l--~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~~ 467 (771)
T TIGR01069 393 ISAILSKT--TENSLVLFDELGAGTDPDEGSALAISILEYL--LKQNAQVLITTHYKELKALMYNNEGVENASVL-FDEE 467 (771)
T ss_pred HHHHHHhc--CCCcEEEecCCCCCCCHHHHHHHHHHHHHHH--HhcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcCC
Confidence 33344333 3578999999865432 2222 1122 235788999999977654422211 11121 1111
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHHHHHHHHHHhcCChhHHHHHHHHhc
Q 039180 266 EAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIALTIVVKALRNKELPEWKNALQELQ 325 (790)
Q Consensus 266 ~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~~~l~~l~ 325 (790)
......+...+... ...+-.|++++ |+|-.+.--|..+.+....+.+.++..+.
T Consensus 468 -~l~p~Ykl~~G~~g----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~ 521 (771)
T TIGR01069 468 -TLSPTYKLLKGIPG----ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLS 521 (771)
T ss_pred -CCceEEEECCCCCC----CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 00000010101111 24577777766 68888888888776554455666666543
No 263
>PRK06921 hypothetical protein; Provisional
Probab=95.94 E-value=0.044 Score=55.60 Aligned_cols=71 Identities=21% Similarity=0.280 Sum_probs=44.3
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcC
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNE 206 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 206 (790)
...-+.++|..|+|||.||.++++....+. -..+++++.. ++...+...+ +......+.+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~~------~l~~~l~~~~----------~~~~~~~~~~~-- 176 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPFV------EGFGDLKDDF----------DLLEAKLNRMK-- 176 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEHH------HHHHHHHHHH----------HHHHHHHHHhc--
Confidence 356789999999999999999999865431 2346676642 2233332221 11222344443
Q ss_pred CcEEEEEeCC
Q 039180 207 KKILLILDNT 216 (790)
Q Consensus 207 kr~LlVlDdv 216 (790)
+-=||||||+
T Consensus 177 ~~dlLiIDDl 186 (266)
T PRK06921 177 KVEVLFIDDL 186 (266)
T ss_pred CCCEEEEecc
Confidence 3469999999
No 264
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.91 E-value=0.066 Score=53.17 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=32.8
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEI 179 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 179 (790)
-.++.|.|..|+||||+|.+++.....+. ..+++++.. .+..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g--~~~~yi~~e--~~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNG--YSVSYVSTQ--LTTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEeCC--CCHHHHHHHH
Confidence 35899999999999999987776653222 345666633 3455665555
No 265
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.90 E-value=0.049 Score=53.81 Aligned_cols=42 Identities=21% Similarity=0.301 Sum_probs=32.8
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPD 171 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 171 (790)
-.++.|.|.+|+||||+|.+++...... -..++|++....+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~~ 60 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLSS 60 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCCH
Confidence 5789999999999999999998776432 34578888765554
No 266
>PRK04296 thymidine kinase; Provisional
Probab=95.87 E-value=0.0083 Score=57.68 Aligned_cols=109 Identities=16% Similarity=0.110 Sum_probs=59.7
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCch---hHHHHHHHHHHHHHHc
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSE---EAEFRRASRMFERLKN 205 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~l~~~l~~ 205 (790)
.++.|+|..|.||||+|..++.+.... -..++.+. ..++.+.....++.+++..... ....+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence 477899999999999999999887543 23333331 2222222233456666543322 111122222222 33
Q ss_pred CCcEEEEEeCCCCc--cCccccCccCCCCCCCcEEEEEeCCh
Q 039180 206 EKKILLILDNTWKS--LDLGTIGIPFGVEHRGCKLLFTTRDL 245 (790)
Q Consensus 206 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtR~~ 245 (790)
++.-+||+|.+.-. ++..++...+ ...|..|++|.++.
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~ 116 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDT 116 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCc
Confidence 34458999998543 1122221211 34577899999874
No 267
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.87 E-value=0.055 Score=56.75 Aligned_cols=60 Identities=20% Similarity=0.212 Sum_probs=43.4
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhhc----cCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIED----ELYDMVVFSEVTQSPDIKQIQQEIAEKLGLE 186 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 186 (790)
..-.++-|+|.+|+|||+++..++-..... ..-..++||+....+...++ .+|++.++.+
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~ 184 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLN 184 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCC
Confidence 346778899999999999999887543211 11236999999999988876 4556666544
No 268
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.86 E-value=0.039 Score=58.72 Aligned_cols=85 Identities=16% Similarity=0.195 Sum_probs=47.0
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHc
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQS-PDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKN 205 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 205 (790)
...+++++|++|+||||++..++........+ .+.-++.... ......++..++.++.+.....+ ...+.+.+..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~---~~~l~~~l~~ 297 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKD---IKKFKETLAR 297 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEecccchhhhHHHHHHHHHHhcCCCeeehHH---HHHHHHHHHh
Confidence 35689999999999999999998765322222 2344443331 12233445555566654432222 2233334432
Q ss_pred CCcEEEEEeC
Q 039180 206 EKKILLILDN 215 (790)
Q Consensus 206 ~kr~LlVlDd 215 (790)
...=+||+|-
T Consensus 298 ~~~D~VLIDT 307 (432)
T PRK12724 298 DGSELILIDT 307 (432)
T ss_pred CCCCEEEEeC
Confidence 2334588884
No 269
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.83 E-value=0.073 Score=55.90 Aligned_cols=58 Identities=29% Similarity=0.315 Sum_probs=42.3
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccC----CCEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDEL----YDMVVFSEVTQSPDIKQIQQEIAEKLGL 185 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 185 (790)
.-.++-|+|.+|+|||+++.+++........ -..++||+....++...+.+. ++.++.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~-~~~~g~ 162 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQM-AEALGL 162 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHH-HHHcCC
Confidence 4578889999999999999999876432211 147999999998888776544 444443
No 270
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.83 E-value=0.017 Score=55.24 Aligned_cols=43 Identities=26% Similarity=0.521 Sum_probs=32.4
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHH
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIK 173 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 173 (790)
.|+|+|-||+||||+|..++.....++.|+ +.-|++...+++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~-VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYN-VLVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCce-EEEEeCCCCCChH
Confidence 689999999999999999777765554343 6667777766644
No 271
>PTZ00035 Rad51 protein; Provisional
Probab=95.83 E-value=0.076 Score=55.84 Aligned_cols=90 Identities=22% Similarity=0.276 Sum_probs=54.6
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhh----ccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCch-------------
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIE----DELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSE------------- 189 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------------- 189 (790)
.-.++.|+|.+|+||||++..++-.... ...-..++||+....++..++ .++++.++.....
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~~ 195 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYNH 195 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCCH
Confidence 4578899999999999999988755431 011235789998888887774 4446665543211
Q ss_pred hHHHHHHHHHHHHHHcCCcEEEEEeCCC
Q 039180 190 EAEFRRASRMFERLKNEKKILLILDNTW 217 (790)
Q Consensus 190 ~~~~~~~~~l~~~l~~~kr~LlVlDdv~ 217 (790)
+...+.+..+...+..++--|||+|-+.
T Consensus 196 e~~~~~l~~~~~~l~~~~~~lvVIDSit 223 (337)
T PTZ00035 196 EHQMQLLSQAAAKMAEERFALLIVDSAT 223 (337)
T ss_pred HHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 1111122223333334455678888874
No 272
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.80 E-value=0.036 Score=51.27 Aligned_cols=123 Identities=17% Similarity=0.233 Sum_probs=68.5
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEe---CC------------------CC---------------
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEV---TQ------------------SP--------------- 170 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~---~~------------------~~--------------- 170 (790)
.-.++.++|++|.||||+.+.+|...+.. ...+|+.- +. .+
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 34678999999999999999999876542 33444421 11 00
Q ss_pred ------CHHHHHHH---HHHHhCCCCch-------hHHHHHHHHHHHHHHcCCcEEEEEeCCC----CccCccccCccCC
Q 039180 171 ------DIKQIQQE---IAEKLGLELSE-------EAEFRRASRMFERLKNEKKILLILDNTW----KSLDLGTIGIPFG 230 (790)
Q Consensus 171 ------~~~~~~~~---i~~~l~~~~~~-------~~~~~~~~~l~~~l~~~kr~LlVlDdv~----~~~~~~~l~~~~~ 230 (790)
...++.+. .++..++.... ...++.-..+.+.+-+ ++-+|+-|+-. ....|+.+...-.
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~-~P~vLlADEPTGNLDp~~s~~im~lfee 182 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVN-QPAVLLADEPTGNLDPDLSWEIMRLFEE 182 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHcc-CCCeEeecCCCCCCChHHHHHHHHHHHH
Confidence 11122222 22233332111 0111222344455554 67888888753 2234544322222
Q ss_pred CCCCCcEEEEEeCChhHHhhhCC
Q 039180 231 VEHRGCKLLFTTRDLDVLIRMGS 253 (790)
Q Consensus 231 ~~~~gs~iliTtR~~~v~~~~~~ 253 (790)
-+..|..|+++|.+.++...+..
T Consensus 183 inr~GtTVl~ATHd~~lv~~~~~ 205 (223)
T COG2884 183 INRLGTTVLMATHDLELVNRMRH 205 (223)
T ss_pred HhhcCcEEEEEeccHHHHHhccC
Confidence 25679999999999988777643
No 273
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.80 E-value=0.044 Score=50.29 Aligned_cols=115 Identities=22% Similarity=0.246 Sum_probs=64.2
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCC---CCCHHHHHHHHH----HHhCCC-----CchhHHHH--
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQ---SPDIKQIQQEIA----EKLGLE-----LSEEAEFR-- 194 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~----~~l~~~-----~~~~~~~~-- 194 (790)
++|-|++..|.||||+|...+-+....+ + .+.++..-+ ......+++.+- .+.+.. .....+..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g-~-~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHG-Y-RVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHH
Confidence 5788899999999999998887765442 2 344433322 334444444431 000110 01111111
Q ss_pred --HHHHHHHHHHcCCcEEEEEeCCCCc-----cCccccCccCCCCCCCcEEEEEeCCh
Q 039180 195 --RASRMFERLKNEKKILLILDNTWKS-----LDLGTIGIPFGVEHRGCKLLFTTRDL 245 (790)
Q Consensus 195 --~~~~l~~~l~~~kr~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~iliTtR~~ 245 (790)
......+.+..++-=|+|||++-.. .+.+.+...+.....+..||+|.|+.
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 2233344444556679999998544 23344444454456677899999984
No 274
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.79 E-value=0.41 Score=50.62 Aligned_cols=30 Identities=30% Similarity=0.413 Sum_probs=26.7
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhhc
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIED 155 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~ 155 (790)
...-+|+|.|.=|+|||++.+.+.+..+..
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 457899999999999999999999988665
No 275
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.77 E-value=0.0018 Score=60.17 Aligned_cols=68 Identities=21% Similarity=0.209 Sum_probs=36.5
Q ss_pred cccCCccCeeeccce-ecceecccCCCccccccCCCccEEeeccCCcccccchhHHHhccccccEEeeccCchh
Q 039180 672 SVELPNLEALELCAI-NVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFELLRELSIADCRGL 744 (790)
Q Consensus 672 ~~~l~~L~~L~l~~~-~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 744 (790)
+..++.++.|.+.+| .+.+++-.... +..++|+.|+|++|+.+++-. ...+..+++|+.|.|.+.+.+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~----~~~~~L~~L~lsgC~rIT~~G-L~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLG----GLAPSLQDLDLSGCPRITDGG-LACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhc----ccccchheeeccCCCeechhH-HHHHHHhhhhHHHHhcCchhh
Confidence 344555666666666 55554432221 234666666666666666543 234555666666666655443
No 276
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.74 E-value=0.042 Score=54.67 Aligned_cols=76 Identities=20% Similarity=0.258 Sum_probs=46.7
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
...+.++|.+|+|||+||.++++..... -..++++++ .++...+-..... .. .....+.+.+.+
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it~------~~l~~~l~~~~~~--~~----~~~~~~l~~l~~-- 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIITV------ADIMSAMKDTFSN--SE----TSEEQLLNDLSN-- 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEH------HHHHHHHHHHHhh--cc----ccHHHHHHHhcc--
Confidence 3468899999999999999999987543 234566643 3444444333311 00 112234455542
Q ss_pred cEEEEEeCCCCc
Q 039180 208 KILLILDNTWKS 219 (790)
Q Consensus 208 r~LlVlDdv~~~ 219 (790)
.=+||+||+...
T Consensus 163 ~dlLvIDDig~~ 174 (244)
T PRK07952 163 VDLLVIDEIGVQ 174 (244)
T ss_pred CCEEEEeCCCCC
Confidence 348888999554
No 277
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=95.73 E-value=0.29 Score=48.47 Aligned_cols=69 Identities=16% Similarity=0.043 Sum_probs=46.0
Q ss_pred EEEEeCChhHHhhhC--CCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHHHHHHHH
Q 039180 238 LLFTTRDLDVLIRMG--SEKNFSIGILNEQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIALTIVVK 307 (790)
Q Consensus 238 iliTtR~~~v~~~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~ 307 (790)
|=-|||.-.+...+. -..+.+++..+.+|-.++..+.+.-. ...-.++.+.+|++...|-|.-..-+-+
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l-~i~i~~~~a~eIA~rSRGTPRIAnRLLr 225 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKIL-GIEIDEEAALEIARRSRGTPRIANRLLR 225 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHh-CCCCChHHHHHHHHhccCCcHHHHHHHH
Confidence 345888754444422 22478899999999999998887421 1222345688999999999974443333
No 278
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.71 E-value=0.085 Score=55.29 Aligned_cols=58 Identities=28% Similarity=0.322 Sum_probs=42.3
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhcc----CCCEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDE----LYDMVVFSEVTQSPDIKQIQQEIAEKLGL 185 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 185 (790)
.-.++-|+|.+|+||||++.+++....... .-..++||+....++...+. ++++.++.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 357888999999999999999987653210 11369999999888887754 44555544
No 279
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.71 E-value=0.082 Score=51.64 Aligned_cols=61 Identities=25% Similarity=0.274 Sum_probs=39.5
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEE-------EeCCCCCHHHH--HHHHHHHhCCC
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFS-------EVTQSPDIKQI--QQEIAEKLGLE 186 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv-------~~~~~~~~~~~--~~~i~~~l~~~ 186 (790)
....+|.++||+|+||||..++++.+...++.-..++=. ...-..++++. +++..++.++.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LG 86 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLG 86 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCC
Confidence 356788999999999999999999987665332223221 12233455543 55677776554
No 280
>PTZ00301 uridine kinase; Provisional
Probab=95.67 E-value=0.027 Score=54.82 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=23.7
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
...+|+|.|.+|+||||+|+.+.+...
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 357999999999999999999987764
No 281
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.67 E-value=0.056 Score=56.69 Aligned_cols=88 Identities=18% Similarity=0.242 Sum_probs=54.8
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHc
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQS-PDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKN 205 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 205 (790)
+-++|+++|+.|+||||-...++.+..-...=..+..|+...- ....+-++..++-++.+.....+...+......+.+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 4899999999999998766666665541112244667766553 345555666777777776554444555555556654
Q ss_pred CCcEEEEEeCC
Q 039180 206 EKKILLILDNT 216 (790)
Q Consensus 206 ~kr~LlVlDdv 216 (790)
.+ +|.+|=+
T Consensus 282 -~d-~ILVDTa 290 (407)
T COG1419 282 -CD-VILVDTA 290 (407)
T ss_pred -CC-EEEEeCC
Confidence 33 4445554
No 282
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.65 E-value=0.03 Score=52.89 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHh
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.|.|.|.+|+||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999984
No 283
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.60 E-value=0.022 Score=58.94 Aligned_cols=29 Identities=21% Similarity=0.214 Sum_probs=25.5
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhh
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIE 154 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~ 154 (790)
.....++|+|+.|.|||.+|++++.....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~ 174 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGI 174 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCC
Confidence 45688999999999999999999998743
No 284
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.60 E-value=0.011 Score=52.82 Aligned_cols=22 Identities=55% Similarity=0.862 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHhHHHHHHHHHh
Q 039180 131 IGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 131 v~I~G~~G~GKTtLa~~~~~~~ 152 (790)
|+|.|..|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999885
No 285
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.58 E-value=0.062 Score=62.02 Aligned_cols=146 Identities=19% Similarity=0.246 Sum_probs=78.2
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCCcE
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEKKI 209 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~ 209 (790)
-|.++|++|+|||++|+.++...... | +.++.++ +. .+ ..+. ....+..++.......+.
T Consensus 187 gill~G~~G~GKt~~~~~~a~~~~~~--f---~~is~~~------~~-~~--~~g~------~~~~~~~~f~~a~~~~P~ 246 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGEAKVP--F---FTISGSD------FV-EM--FVGV------GASRVRDMFEQAKKAAPC 246 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCCC--E---EEEehHH------hH-Hh--hhcc------cHHHHHHHHHHHHhcCCc
Confidence 38999999999999999998875322 2 2232221 10 00 0010 111233344444445679
Q ss_pred EEEEeCCCCccC----------------ccccCccCCC--CCCCcEEEEEeCChhHHhh--h---CCCceEEccCCCHHH
Q 039180 210 LLILDNTWKSLD----------------LGTIGIPFGV--EHRGCKLLFTTRDLDVLIR--M---GSEKNFSIGILNEQE 266 (790)
Q Consensus 210 LlVlDdv~~~~~----------------~~~l~~~~~~--~~~gs~iliTtR~~~v~~~--~---~~~~~~~l~~L~~~~ 266 (790)
+|++|+++.... ...+...+.. ...+.-||.||...+..+. . .....+.+...+.++
T Consensus 247 IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~ 326 (644)
T PRK10733 247 IIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRG 326 (644)
T ss_pred EEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHH
Confidence 999999876411 0011011111 1234445557776554333 1 124578888888888
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHHhcC
Q 039180 267 AWRLFKIIAGAYVENRELKSTATSVAKACRG 297 (790)
Q Consensus 267 ~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~g 297 (790)
-.+++..+.......++. ....+++.+.|
T Consensus 327 R~~Il~~~~~~~~l~~~~--d~~~la~~t~G 355 (644)
T PRK10733 327 REQILKVHMRRVPLAPDI--DAAIIARGTPG 355 (644)
T ss_pred HHHHHHHHhhcCCCCCcC--CHHHHHhhCCC
Confidence 888888877533222211 12346666655
No 286
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.58 E-value=0.012 Score=56.95 Aligned_cols=81 Identities=23% Similarity=0.300 Sum_probs=45.2
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhhhccCCC---EEEEEEeCCCCCHHHHHHHHHHH---hCCCCchhHHHHHHHHHHHHH
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAIEDELYD---MVVFSEVTQSPDIKQIQQEIAEK---LGLELSEEAEFRRASRMFERL 203 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~---~~~wv~~~~~~~~~~~~~~i~~~---l~~~~~~~~~~~~~~~l~~~l 203 (790)
||+|.|.+|+||||+|+.+...+.... .. ....++.............-... ..-..+..-+.+.+...+..+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L 79 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRG-IPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKAL 79 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCT-TTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccC-cCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHH
Confidence 799999999999999999999886432 22 23334433333322222221111 111122333445556666777
Q ss_pred HcCCcEEE
Q 039180 204 KNEKKILL 211 (790)
Q Consensus 204 ~~~kr~Ll 211 (790)
.+++..-+
T Consensus 80 ~~g~~i~~ 87 (194)
T PF00485_consen 80 KNGGSIEI 87 (194)
T ss_dssp HTTSCEEE
T ss_pred hCCCcccc
Confidence 77665444
No 287
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.52 E-value=0.016 Score=54.05 Aligned_cols=27 Identities=37% Similarity=0.530 Sum_probs=23.7
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhc
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIED 155 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~ 155 (790)
+.|-+.|.+|+||||+|++++...+..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 578899999999999999999887654
No 288
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.51 E-value=0.093 Score=53.42 Aligned_cols=58 Identities=24% Similarity=0.303 Sum_probs=38.1
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCC-HHHHHHHHHHHhCC
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPD-IKQIQQEIAEKLGL 185 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~ 185 (790)
...++++++|++|+||||++..++...... -..+..+++..... ..+-++..++..+.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~--g~~V~li~~D~~r~~a~~ql~~~~~~~~i 128 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ--GKSVLLAAGDTFRAAAIEQLEEWAKRLGV 128 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeCCCCCHHHHHHHHHHHHhCCe
Confidence 356899999999999999999999877543 23566776654221 12333444555553
No 289
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.032 Score=58.02 Aligned_cols=86 Identities=24% Similarity=0.280 Sum_probs=59.9
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchh--HHHHHHHHHHHHHHc
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEE--AEFRRASRMFERLKN 205 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 205 (790)
=.+|.|-|-+|+|||||..+++.+...+. .+.+|+-.++.... +--++.++.+.... -....++.+.+.+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEES~~Qi---klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEESLQQI---KLRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCcCHHHH---HHHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 46789999999999999999999987553 67888766554332 23455666543221 122345667777777
Q ss_pred CCcEEEEEeCCCCc
Q 039180 206 EKKILLILDNTWKS 219 (790)
Q Consensus 206 ~kr~LlVlDdv~~~ 219 (790)
.+.-++|+|-+.+.
T Consensus 167 ~~p~lvVIDSIQT~ 180 (456)
T COG1066 167 EKPDLVVIDSIQTL 180 (456)
T ss_pred cCCCEEEEecccee
Confidence 78899999998654
No 290
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.15 Score=55.70 Aligned_cols=128 Identities=16% Similarity=0.245 Sum_probs=74.2
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHc
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKN 205 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 205 (790)
...+=|.++|++|.|||.||++++....+- | +.++. -+|...... ...+.+.++++.-.+
T Consensus 221 ~PprGvLlHGPPGCGKT~lA~AiAgel~vP--f-----~~isA--------peivSGvSG-----ESEkkiRelF~~A~~ 280 (802)
T KOG0733|consen 221 RPPRGVLLHGPPGCGKTSLANAIAGELGVP--F-----LSISA--------PEIVSGVSG-----ESEKKIRELFDQAKS 280 (802)
T ss_pred CCCCceeeeCCCCccHHHHHHHHhhhcCCc--e-----Eeecc--------hhhhcccCc-----ccHHHHHHHHHHHhc
Confidence 334558899999999999999999987543 3 22221 112222211 123467778888777
Q ss_pred CCcEEEEEeCCCCcc---C-----------------ccccCccCCCCCCCcEEEE---EeCChhHHhh---hCC-CceEE
Q 039180 206 EKKILLILDNTWKSL---D-----------------LGTIGIPFGVEHRGCKLLF---TTRDLDVLIR---MGS-EKNFS 258 (790)
Q Consensus 206 ~kr~LlVlDdv~~~~---~-----------------~~~l~~~~~~~~~gs~ili---TtR~~~v~~~---~~~-~~~~~ 258 (790)
.-++++++|+++... + ++.+... ...|-.||| |+|...+-.. .+. ..-+.
T Consensus 281 ~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~---~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~ 357 (802)
T KOG0733|consen 281 NAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNE---KTKGDPVLVIGATNRPDSLDPALRRAGRFDREIC 357 (802)
T ss_pred cCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccccc---ccCCCCeEEEecCCCCcccCHHHhccccccceee
Confidence 789999999987541 1 1222111 112333433 5565433322 222 23566
Q ss_pred ccCCCHHHHHHHHHHHhC
Q 039180 259 IGILNEQEAWRLFKIIAG 276 (790)
Q Consensus 259 l~~L~~~~~~~Lf~~~~~ 276 (790)
+.--++.+-.++++..+.
T Consensus 358 l~vP~e~aR~~IL~~~~~ 375 (802)
T KOG0733|consen 358 LGVPSETAREEILRIICR 375 (802)
T ss_pred ecCCchHHHHHHHHHHHh
Confidence 666677777777776664
No 291
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.48 E-value=0.065 Score=50.71 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=26.8
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeC
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVT 167 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~ 167 (790)
++.++|++|+||||++..++....... ..++.++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g--~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKG--KKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC--CcEEEEEcC
Confidence 688999999999999999998765431 234445544
No 292
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.48 E-value=0.083 Score=50.67 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=31.3
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHH
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQE 178 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 178 (790)
++.|.|.+|+|||++|.++....... =..++|++.... ..++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~~--~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEES--PEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCCC--HHHHHHH
Confidence 36799999999999999987765422 245778876543 4444433
No 293
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.47 E-value=0.1 Score=52.26 Aligned_cols=49 Identities=14% Similarity=0.272 Sum_probs=35.3
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEI 179 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 179 (790)
.-.++.|.|.+|+|||++|.++......+ -..++|++... +..++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEeeC--CHHHHHHHH
Confidence 35789999999999999999987654322 45688888765 445555543
No 294
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.45 E-value=0.054 Score=57.66 Aligned_cols=86 Identities=24% Similarity=0.289 Sum_probs=51.9
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchh--HHHHHHHHHHHHHHc
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEE--AEFRRASRMFERLKN 205 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 205 (790)
-.++.|.|.+|+||||++.+++...... -..++|++..+. ...+ +.-++.++...... .....+..+.+.+..
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 4689999999999999999999876543 346788876543 2332 22244555432210 001123344444444
Q ss_pred CCcEEEEEeCCCC
Q 039180 206 EKKILLILDNTWK 218 (790)
Q Consensus 206 ~kr~LlVlDdv~~ 218 (790)
.+.-++|+|.+..
T Consensus 157 ~~~~lVVIDSIq~ 169 (372)
T cd01121 157 LKPDLVIIDSIQT 169 (372)
T ss_pred cCCcEEEEcchHH
Confidence 4566888888743
No 295
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.44 E-value=0.032 Score=53.39 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHh
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
||.|+|++|+||||+|+.++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998875
No 296
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.42 E-value=0.059 Score=50.84 Aligned_cols=119 Identities=20% Similarity=0.226 Sum_probs=61.3
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh-hh--cc---CCC--EEEEEEeCCCCCHHHHHHHHHHHhCCCCc--h-----hH-
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA-IE--DE---LYD--MVVFSEVTQSPDIKQIQQEIAEKLGLELS--E-----EA- 191 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~-~~--~~---~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~-----~~- 191 (790)
=.+++|+|+.|.|||||.+.+..+. .+ .. .|. .+.|+ .+ .+.++.++.... . -+
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 4689999999999999999886321 00 00 010 12232 11 345666664321 1 11
Q ss_pred HHHHHHHHHHHHHcCC--cEEEEEeCCCCccC---ccccCccCCC-CCCCcEEEEEeCChhHHhhhCCCceEEc
Q 039180 192 EFRRASRMFERLKNEK--KILLILDNTWKSLD---LGTIGIPFGV-EHRGCKLLFTTRDLDVLIRMGSEKNFSI 259 (790)
Q Consensus 192 ~~~~~~~l~~~l~~~k--r~LlVlDdv~~~~~---~~~l~~~~~~-~~~gs~iliTtR~~~v~~~~~~~~~~~l 259 (790)
.......+...+.. + .-++++|+....-+ .+.+...+.. ...|..||++|.+.+.... .+..+.+
T Consensus 91 Gq~qrl~laral~~-~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 91 GELQRVKLASELFS-EPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHhh-CCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 11222334445544 4 56888999755422 1222222211 1246678889988765542 3344444
No 297
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.42 E-value=0.14 Score=61.05 Aligned_cols=135 Identities=16% Similarity=0.131 Sum_probs=71.0
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccC-----CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDEL-----YDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFE 201 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~ 201 (790)
...-+.++|.+|+|||++|..++.+...... -..+++++++.... +.... ..-...+..+++
T Consensus 198 ~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~a------------g~~~~-g~~e~~lk~~~~ 264 (857)
T PRK10865 198 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA------------GAKYR-GEFEERLKGVLN 264 (857)
T ss_pred CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhh------------ccchh-hhhHHHHHHHHH
Confidence 3445679999999999999999988643211 11233433332110 00000 111233445555
Q ss_pred HHH-cCCcEEEEEeCCCCccC---------ccccCccCCCCCCCcEEEEEeCChhHHh------h-hCCCceEEccCCCH
Q 039180 202 RLK-NEKKILLILDNTWKSLD---------LGTIGIPFGVEHRGCKLLFTTRDLDVLI------R-MGSEKNFSIGILNE 264 (790)
Q Consensus 202 ~l~-~~kr~LlVlDdv~~~~~---------~~~l~~~~~~~~~gs~iliTtR~~~v~~------~-~~~~~~~~l~~L~~ 264 (790)
.+. .+++.+|++|++..... ...+..+....+ .-++|-+|...+... . ....+.+.+..-+.
T Consensus 265 ~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g-~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~ 343 (857)
T PRK10865 265 DLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG-ELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSV 343 (857)
T ss_pred HHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC-CCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCH
Confidence 543 34679999999865421 111212221111 234555554433211 1 22334677777799
Q ss_pred HHHHHHHHHHh
Q 039180 265 QEAWRLFKIIA 275 (790)
Q Consensus 265 ~~~~~Lf~~~~ 275 (790)
++..++++...
T Consensus 344 ~~~~~iL~~l~ 354 (857)
T PRK10865 344 EDTIAILRGLK 354 (857)
T ss_pred HHHHHHHHHHh
Confidence 99998886544
No 298
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.40 E-value=0.049 Score=50.52 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.++.|.|++|+|||||++.+..+.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 578999999999999999999875
No 299
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.40 E-value=0.18 Score=60.39 Aligned_cols=133 Identities=14% Similarity=0.144 Sum_probs=72.2
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCC----CE-EEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELY----DM-VVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFE 201 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f----~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~ 201 (790)
...-+.++|++|+|||++|..++.+....... .. ++.++++ .+. . +.... ..-...+..+++
T Consensus 193 ~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~------~l~----a--~~~~~-g~~e~~l~~~l~ 259 (852)
T TIGR03346 193 TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG------ALI----A--GAKYR-GEFEERLKAVLN 259 (852)
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH------HHh----h--cchhh-hhHHHHHHHHHH
Confidence 44556689999999999999999886432111 12 2333221 110 0 00111 112234555666
Q ss_pred HHHc-CCcEEEEEeCCCCccC----------ccccCccCCCCCCC-cEEEEEeCChhHHh-------hhCCCceEEccCC
Q 039180 202 RLKN-EKKILLILDNTWKSLD----------LGTIGIPFGVEHRG-CKLLFTTRDLDVLI-------RMGSEKNFSIGIL 262 (790)
Q Consensus 202 ~l~~-~kr~LlVlDdv~~~~~----------~~~l~~~~~~~~~g-s~iliTtR~~~v~~-------~~~~~~~~~l~~L 262 (790)
.+.. +++.+|++|++..... .+.+... ...| -++|-+|...+.-. .....+.+.++..
T Consensus 260 ~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~---l~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p 336 (852)
T TIGR03346 260 EVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPA---LARGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEP 336 (852)
T ss_pred HHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchh---hhcCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCC
Confidence 6542 4679999999865421 1112222 1222 24444444333211 1234467889999
Q ss_pred CHHHHHHHHHHHh
Q 039180 263 NEQEAWRLFKIIA 275 (790)
Q Consensus 263 ~~~~~~~Lf~~~~ 275 (790)
+.++..+++....
T Consensus 337 ~~~~~~~iL~~~~ 349 (852)
T TIGR03346 337 TVEDTISILRGLK 349 (852)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999887654
No 300
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.39 E-value=0.007 Score=34.90 Aligned_cols=17 Identities=18% Similarity=0.524 Sum_probs=7.4
Q ss_pred ccEEeccCCCCcccchh
Q 039180 550 LKILSFVRSDIVQLPKA 566 (790)
Q Consensus 550 L~~L~L~~~~l~~lp~~ 566 (790)
|++|+|++|+++.+|..
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 34444444444444443
No 301
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.39 E-value=0.014 Score=45.44 Aligned_cols=23 Identities=39% Similarity=0.627 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHh
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
+|+|.|..|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 302
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.39 E-value=0.07 Score=53.52 Aligned_cols=140 Identities=15% Similarity=0.153 Sum_probs=73.3
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhhhccC----------CCEEEEEEeCCCCC-HHHHHHHHHHHhCCCCc----------
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAIEDEL----------YDMVVFSEVTQSPD-IKQIQQEIAEKLGLELS---------- 188 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~~~~~----------f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~---------- 188 (790)
+..|+|++|+|||+||..++-....... -..+++++...+.+ +.+-+..+...++....
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~ 82 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGR 82 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccC
Confidence 5678999999999999999876442211 12366666665442 33444445444321100
Q ss_pred -------h---hHHHHHHHHHHHHHHcCCcEEEEEeCCCCc--------cCccccCccCCC--CCCCcEEEEEeCChhHH
Q 039180 189 -------E---EAEFRRASRMFERLKNEKKILLILDNTWKS--------LDLGTIGIPFGV--EHRGCKLLFTTRDLDVL 248 (790)
Q Consensus 189 -------~---~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--------~~~~~l~~~~~~--~~~gs~iliTtR~~~v~ 248 (790)
. ......+..+.+.+...+.-+||+|-+... .....+...+.. ...|+.||+++....-.
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~~ 162 (239)
T cd01125 83 IQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKGS 162 (239)
T ss_pred CCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCccc
Confidence 0 011233445555554345679999965321 111111111111 23467788877754221
Q ss_pred h--------h------h-CCCceEEccCCCHHHHHH
Q 039180 249 I--------R------M-GSEKNFSIGILNEQEAWR 269 (790)
Q Consensus 249 ~--------~------~-~~~~~~~l~~L~~~~~~~ 269 (790)
. . . ...-.+.+.+++.+++.+
T Consensus 163 ~~~~~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~ 198 (239)
T cd01125 163 AKDGDTQEAARGASALVDGARWVRALTRMTSEEAEK 198 (239)
T ss_pred ccCcccccccCcHHHHhcccceEEEEeeCCHHHHHh
Confidence 1 0 1 122367777788887766
No 303
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.39 E-value=0.035 Score=50.32 Aligned_cols=43 Identities=23% Similarity=0.239 Sum_probs=32.9
Q ss_pred EEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHH
Q 039180 131 IGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQE 178 (790)
Q Consensus 131 v~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 178 (790)
|.++|..|+|||++|+.++.... ....-+.++...+..++...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~-----~~~~~i~~~~~~~~~dl~g~ 44 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG-----RPVIRINCSSDTTEEDLIGS 44 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT-----CEEEEEE-TTTSTHHHHHCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhh-----cceEEEEeccccccccceee
Confidence 67999999999999999999872 23556778887777766543
No 304
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.053 Score=59.74 Aligned_cols=135 Identities=17% Similarity=0.110 Sum_probs=74.8
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHc
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKN 205 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 205 (790)
...+=|..+|++|.|||++|+++++.... .| +.++.. +++...- .+ ....+..++++-++
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~--nF-----lsvkgp--------EL~sk~v----Ge-SEr~ir~iF~kAR~ 525 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGM--NF-----LSVKGP--------ELFSKYV----GE-SERAIREVFRKARQ 525 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcC--Ce-----eeccCH--------HHHHHhc----Cc-hHHHHHHHHHHHhh
Confidence 55677999999999999999999987532 24 222211 1111111 01 12345556666665
Q ss_pred CCcEEEEEeCCCCccC-------------ccccCccCCCCCCCcEEEE---EeCChhHHhh-hC---CCceEEccCCCHH
Q 039180 206 EKKILLILDNTWKSLD-------------LGTIGIPFGVEHRGCKLLF---TTRDLDVLIR-MG---SEKNFSIGILNEQ 265 (790)
Q Consensus 206 ~kr~LlVlDdv~~~~~-------------~~~l~~~~~~~~~gs~ili---TtR~~~v~~~-~~---~~~~~~l~~L~~~ 265 (790)
-...+|.||.++.... +..+..-+........|+| |.|...+... +. .++.+.++.-+.+
T Consensus 526 ~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~ 605 (693)
T KOG0730|consen 526 VAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLE 605 (693)
T ss_pred cCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHH
Confidence 5668888888865421 1111111111122223443 4454443333 33 3456777777777
Q ss_pred HHHHHHHHHhCCCCC
Q 039180 266 EAWRLFKIIAGAYVE 280 (790)
Q Consensus 266 ~~~~Lf~~~~~~~~~ 280 (790)
.-.++|+.++.....
T Consensus 606 aR~~Ilk~~~kkmp~ 620 (693)
T KOG0730|consen 606 ARLEILKQCAKKMPF 620 (693)
T ss_pred HHHHHHHHHHhcCCC
Confidence 778899988864433
No 305
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.37 E-value=0.092 Score=50.83 Aligned_cols=111 Identities=19% Similarity=0.277 Sum_probs=57.5
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhh--ccCCC---------EEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIE--DELYD---------MVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRAS 197 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~--~~~f~---------~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 197 (790)
++++|+|+.|.||||+.+.+...... .+.+- ..++...+. ..++.... .. ...+...+.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~-------~d~l~~~~--s~-~~~e~~~~~ 95 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRV-------SDDLRDGI--SY-FYAELRRLK 95 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccc-------hhcccccc--Ch-HHHHHHHHH
Confidence 89999999999999999998765421 11110 001111111 11111110 00 011123344
Q ss_pred HHHHHHHcCCcEEEEEeCCCCccC---cccc----CccCCCCCCCcEEEEEeCChhHHhhh
Q 039180 198 RMFERLKNEKKILLILDNTWKSLD---LGTI----GIPFGVEHRGCKLLFTTRDLDVLIRM 251 (790)
Q Consensus 198 ~l~~~l~~~kr~LlVlDdv~~~~~---~~~l----~~~~~~~~~gs~iliTtR~~~v~~~~ 251 (790)
.+.+.+...++-++++|+.-...+ ...+ ...+ ...|..+|++|.+.+.+...
T Consensus 96 ~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l--~~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 96 EIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFL--KNKNTIGIISTHDLELADLL 154 (199)
T ss_pred HHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHH--HHCCCEEEEEcCcHHHHHhh
Confidence 555544322678999999744321 1111 1122 13367799999997777665
No 306
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.37 E-value=0.045 Score=52.07 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
=.+++|.|..|.|||||++.++...
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3579999999999999999998654
No 307
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=95.34 E-value=0.023 Score=55.53 Aligned_cols=58 Identities=17% Similarity=0.238 Sum_probs=40.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhcccCCcccccceecCCceeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 89 RYQHGRKAETEKEALSKLREEAERFDNRISYPTIREDIWLNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.+.+.+++..+++.++.+.+.+++-.... .......|+|+|.+|+|||||...+....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 8 RRLIRERIAKLRRELEKVKKQRELQRRRR------KRSGIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhh------hhcCCCeEEEECCCCCCHHHHHHHHhcch
Confidence 34566778888888877765543322111 12346789999999999999999988763
No 308
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.32 E-value=0.03 Score=66.91 Aligned_cols=85 Identities=19% Similarity=0.302 Sum_probs=46.7
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
..++.++|+.|+|||++|+.++...... -...+.++++.......+ .+-++.+.... ..+....+.+.+....
T Consensus 595 ~~~~Lf~Gp~GvGKt~lA~~La~~l~~~--~~~~i~~d~s~~~~~~~~----~~l~g~~~g~~-g~~~~g~l~~~v~~~p 667 (852)
T TIGR03346 595 IGSFLFLGPTGVGKTELAKALAEFLFDD--EDAMVRIDMSEYMEKHSV----ARLIGAPPGYV-GYEEGGQLTEAVRRKP 667 (852)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhhcccchH----HHhcCCCCCcc-CcccccHHHHHHHcCC
Confidence 5678899999999999999999876432 233455555543221111 11122211100 0000112333444334
Q ss_pred cEEEEEeCCCCc
Q 039180 208 KILLILDNTWKS 219 (790)
Q Consensus 208 r~LlVlDdv~~~ 219 (790)
..+|+||++...
T Consensus 668 ~~vlllDeieka 679 (852)
T TIGR03346 668 YSVVLFDEVEKA 679 (852)
T ss_pred CcEEEEeccccC
Confidence 569999999765
No 309
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.30 E-value=1.1 Score=47.37 Aligned_cols=59 Identities=22% Similarity=0.289 Sum_probs=38.4
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCC
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQ-SPDIKQIQQEIAEKLGLE 186 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~ 186 (790)
....||..+|.-|.||||.|..++..++.+ .+. +.-|++.. .+...+-++.++.+.+.+
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~-~~k-vllVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKK-GKK-VLLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHc-CCc-eEEEecccCChHHHHHHHHHHHHcCCc
Confidence 457899999999999999999999988753 222 33333322 122334455666666543
No 310
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.053 Score=51.89 Aligned_cols=61 Identities=21% Similarity=0.243 Sum_probs=39.3
Q ss_pred HHHHHHHHcCCcEEEEEeCCCCccCccccCccC---C-CCCCCcEEEEEeCChhHHhhhCCCceEE
Q 039180 197 SRMFERLKNEKKILLILDNTWKSLDLGTIGIPF---G-VEHRGCKLLFTTRDLDVLIRMGSEKNFS 258 (790)
Q Consensus 197 ~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~---~-~~~~gs~iliTtR~~~v~~~~~~~~~~~ 258 (790)
.++++-+.- ++-+.|||..++--+.+++...- . ...+|+-++|.|..+.++.....+.+|-
T Consensus 153 ~EilQ~~~l-ePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhv 217 (251)
T COG0396 153 NEILQLLLL-EPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHV 217 (251)
T ss_pred HHHHHHHhc-CCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEE
Confidence 455555543 56799999998876555442211 1 1345777888899999998876655443
No 311
>PRK05439 pantothenate kinase; Provisional
Probab=95.30 E-value=0.074 Score=54.75 Aligned_cols=81 Identities=19% Similarity=0.170 Sum_probs=45.9
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHH--HHHHhCCCCchhHHHHHHHHHHHHH
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQE--IAEKLGLELSEEAEFRRASRMFERL 203 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~--i~~~l~~~~~~~~~~~~~~~l~~~l 203 (790)
...-+|+|.|.+|+||||+|+.+.........-..+.-++...-....+.+.. +...-+ .+..-+.+.+...+..+
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg--~Pes~D~~~l~~~L~~L 161 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKG--FPESYDMRALLRFLSDV 161 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCC--CcccccHHHHHHHHHHH
Confidence 45789999999999999999999886542211123444555544333322221 111111 12233445566677777
Q ss_pred HcCCc
Q 039180 204 KNEKK 208 (790)
Q Consensus 204 ~~~kr 208 (790)
+.|+.
T Consensus 162 k~G~~ 166 (311)
T PRK05439 162 KSGKP 166 (311)
T ss_pred HcCCC
Confidence 76654
No 312
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.13 Score=58.48 Aligned_cols=152 Identities=20% Similarity=0.181 Sum_probs=92.8
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCCc
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEKK 208 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 208 (790)
+=+.++|++|+|||-||++++-...+. |++++.+ +..+.+... ....+..++...+...+
T Consensus 345 kGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGS--------EFvE~~~g~-----~asrvr~lf~~ar~~aP 404 (774)
T KOG0731|consen 345 KGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGS--------EFVEMFVGV-----GASRVRDLFPLARKNAP 404 (774)
T ss_pred CceEEECCCCCcHHHHHHHHhcccCCc-------eeeechH--------HHHHHhccc-----chHHHHHHHHHhhccCC
Confidence 448899999999999999999765432 3344321 111211111 12345667777776788
Q ss_pred EEEEEeCCCCccC-----------------ccccCccCCCCCC--CcEEEEEeCChhHHhh--h--C-CCceEEccCCCH
Q 039180 209 ILLILDNTWKSLD-----------------LGTIGIPFGVEHR--GCKLLFTTRDLDVLIR--M--G-SEKNFSIGILNE 264 (790)
Q Consensus 209 ~LlVlDdv~~~~~-----------------~~~l~~~~~~~~~--gs~iliTtR~~~v~~~--~--~-~~~~~~l~~L~~ 264 (790)
++|.+|+++...- +..+..-...... +--++-+|+..++.+. + + -+..+.++.-+.
T Consensus 405 ~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~ 484 (774)
T KOG0731|consen 405 SIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDV 484 (774)
T ss_pred eEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCch
Confidence 9999999875521 1111111111112 2223335555555444 2 2 235788888889
Q ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHH
Q 039180 265 QEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIA 301 (790)
Q Consensus 265 ~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla 301 (790)
....++|..++.......+..++.+ |+...-|.+=|
T Consensus 485 ~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 485 KGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred hhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHH
Confidence 9999999999875544455666777 88888887754
No 313
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.29 E-value=0.046 Score=63.68 Aligned_cols=134 Identities=16% Similarity=0.221 Sum_probs=72.0
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhcc-CC---CEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDE-LY---DMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLK 204 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~-~f---~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 204 (790)
.-+.++|.+|+|||++|+.++....... .+ +..+|.. +...+ .. +.... ..-...+..+++.+.
T Consensus 208 ~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la--G~~~~-Ge~e~rl~~l~~~l~ 275 (758)
T PRK11034 208 NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA--GTKYR-GDFEKRFKALLKQLE 275 (758)
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc--ccchh-hhHHHHHHHHHHHHH
Confidence 3456899999999999999998753321 11 3344421 11111 10 11111 112234455666665
Q ss_pred cCCcEEEEEeCCCCcc--------Ccc--ccCccCCCCCCCcEEEEEeCChhHHh-------hhCCCceEEccCCCHHHH
Q 039180 205 NEKKILLILDNTWKSL--------DLG--TIGIPFGVEHRGCKLLFTTRDLDVLI-------RMGSEKNFSIGILNEQEA 267 (790)
Q Consensus 205 ~~kr~LlVlDdv~~~~--------~~~--~l~~~~~~~~~gs~iliTtR~~~v~~-------~~~~~~~~~l~~L~~~~~ 267 (790)
..++.+|++|++.... +.+ .+..++... ..-++|-+|...+... .....+.+.++..+.++.
T Consensus 276 ~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~ 354 (758)
T PRK11034 276 QDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEET 354 (758)
T ss_pred hcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHH
Confidence 4466899999986431 111 111222111 1234444444333211 123446899999999999
Q ss_pred HHHHHHHh
Q 039180 268 WRLFKIIA 275 (790)
Q Consensus 268 ~~Lf~~~~ 275 (790)
.++++...
T Consensus 355 ~~IL~~~~ 362 (758)
T PRK11034 355 VQIINGLK 362 (758)
T ss_pred HHHHHHHH
Confidence 99988654
No 314
>PRK14974 cell division protein FtsY; Provisional
Probab=95.27 E-value=0.082 Score=55.27 Aligned_cols=90 Identities=21% Similarity=0.225 Sum_probs=50.6
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCCCch----hHHHHHHHHHH
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQS-PDIKQIQQEIAEKLGLELSE----EAEFRRASRMF 200 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~l~ 200 (790)
....+|.++|+.|+||||++..++...... .+ .++.+..... ....+-++..++.++.+... .+....+....
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~-g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKN-GF-SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CC-eEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 346899999999999999999998876543 23 3444543321 12333455666777654321 11111122222
Q ss_pred HHHH-cCCcEEEEEeCCCC
Q 039180 201 ERLK-NEKKILLILDNTWK 218 (790)
Q Consensus 201 ~~l~-~~kr~LlVlDdv~~ 218 (790)
+... .+.. ++++|-.-.
T Consensus 216 ~~~~~~~~D-vVLIDTaGr 233 (336)
T PRK14974 216 EHAKARGID-VVLIDTAGR 233 (336)
T ss_pred HHHHhCCCC-EEEEECCCc
Confidence 2222 3333 888898743
No 315
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.26 E-value=0.12 Score=61.02 Aligned_cols=151 Identities=15% Similarity=0.177 Sum_probs=80.0
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
.+-|.++|++|+|||++|+.+++..... | +.++.+. +... ... .....+..+++......
T Consensus 212 ~~giLL~GppGtGKT~laraia~~~~~~--~---i~i~~~~----------i~~~----~~g-~~~~~l~~lf~~a~~~~ 271 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANEAGAY--F---ISINGPE----------IMSK----YYG-ESEERLREIFKEAEENA 271 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhCCe--E---EEEecHH----------Hhcc----ccc-HHHHHHHHHHHHHHhcC
Confidence 3568899999999999999999875321 2 2232211 1110 011 11223445555555556
Q ss_pred cEEEEEeCCCCccC-------------ccccCccCCC-CCCCcEEEE-EeCChh-HHhhhC----CCceEEccCCCHHHH
Q 039180 208 KILLILDNTWKSLD-------------LGTIGIPFGV-EHRGCKLLF-TTRDLD-VLIRMG----SEKNFSIGILNEQEA 267 (790)
Q Consensus 208 r~LlVlDdv~~~~~-------------~~~l~~~~~~-~~~gs~ili-TtR~~~-v~~~~~----~~~~~~l~~L~~~~~ 267 (790)
..+|++||++.... ...+...+.. ...+..++| ||.... +...+. -...+.+...+.++-
T Consensus 272 p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R 351 (733)
T TIGR01243 272 PSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRAR 351 (733)
T ss_pred CcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHH
Confidence 78999999865310 0111111111 122333444 444322 212111 234677888888888
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcH
Q 039180 268 WRLFKIIAGAYVENRELKSTATSVAKACRGLPI 300 (790)
Q Consensus 268 ~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 300 (790)
.++++.......... ......+++.+.|.--
T Consensus 352 ~~Il~~~~~~~~l~~--d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 352 KEILKVHTRNMPLAE--DVDLDKLAEVTHGFVG 382 (733)
T ss_pred HHHHHHHhcCCCCcc--ccCHHHHHHhCCCCCH
Confidence 888886654322211 1225667888888653
No 316
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.26 E-value=0.049 Score=57.64 Aligned_cols=117 Identities=16% Similarity=0.149 Sum_probs=69.2
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhcc-------------------CCCEEEEEEeCCCCC---HHHHHHHHHHHhCCC
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDE-------------------LYDMVVFSEVTQSPD---IKQIQQEIAEKLGLE 186 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~-------------------~f~~~~wv~~~~~~~---~~~~~~~i~~~l~~~ 186 (790)
+-+.++|+.|+||||+|..++...-... ...-+..++.++... ..+..+++.+.....
T Consensus 25 halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~ 104 (325)
T COG0470 25 HALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSES 104 (325)
T ss_pred ceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhccC
Confidence 3589999999999999999998864221 123355565555544 344444554444332
Q ss_pred CchhHHHHHHHHHHHHHHcCCcEEEEEeCCCCcc--CccccCccCCCCCCCcEEEEEeCC-hhHHhh-hCCCceEEccC
Q 039180 187 LSEEAEFRRASRMFERLKNEKKILLILDNTWKSL--DLGTIGIPFGVEHRGCKLLFTTRD-LDVLIR-MGSEKNFSIGI 261 (790)
Q Consensus 187 ~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR~-~~v~~~-~~~~~~~~l~~ 261 (790)
.. .++.-++|+|+++... .-.++...+-.....+++|++|.. ..+... -.....+.+.+
T Consensus 105 ~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 105 PL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred CC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhcceeeecCC
Confidence 21 2567899999997663 233333333334456677777763 333332 23345666666
No 317
>PRK08233 hypothetical protein; Provisional
Probab=95.24 E-value=0.016 Score=55.48 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=23.5
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
..+|+|.|.+|+||||+|..++....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999998763
No 318
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.24 E-value=0.066 Score=54.66 Aligned_cols=44 Identities=16% Similarity=0.013 Sum_probs=29.2
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCC
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSP 170 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 170 (790)
...+|+|.|..|+||||+|+.+..-......-..+..++...-.
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 46799999999999999998877655321001124555555433
No 319
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.22 E-value=0.038 Score=56.03 Aligned_cols=26 Identities=35% Similarity=0.365 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIE 154 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~ 154 (790)
+.|.|+|.+|+||||+|+++...+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 67999999999999999999998765
No 320
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.22 E-value=0.11 Score=50.08 Aligned_cols=50 Identities=24% Similarity=0.333 Sum_probs=33.3
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCC--------CEEEEEEeCCCCCHHHHHHHHH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELY--------DMVVFSEVTQSPDIKQIQQEIA 180 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f--------~~~~wv~~~~~~~~~~~~~~i~ 180 (790)
.++.|.|.+|+||||++.+++........| ..++|++.... ...+.+.+.
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl~ 90 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS--ESQIARRLR 90 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS---HHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC--HHHHHHHHH
Confidence 488999999999999999998876643322 25788887766 334444443
No 321
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.15 E-value=0.068 Score=53.18 Aligned_cols=29 Identities=31% Similarity=0.431 Sum_probs=25.8
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhc
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIED 155 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~ 155 (790)
...+|+|.|+.|+|||||++.+.......
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 57899999999999999999999887654
No 322
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.15 E-value=0.019 Score=52.38 Aligned_cols=23 Identities=43% Similarity=0.625 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHh
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999998764
No 323
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.14 E-value=0.14 Score=51.82 Aligned_cols=89 Identities=21% Similarity=0.192 Sum_probs=55.7
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCC---C--CchhHHHHHHHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGL---E--LSEEAEFRRASRMFE 201 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~---~--~~~~~~~~~~~~l~~ 201 (790)
.-+++=|+|+.|+||||+|.+++-.... .-..++||+....+++..+.+.-...+.. . ...+.....++.+..
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq~--~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~ 136 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQK--PGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLAR 136 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhhc--CCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHHH
Confidence 4578889999999999999887755422 24478999999999988765444332211 1 111122222333333
Q ss_pred HHHcCCcEEEEEeCCCC
Q 039180 202 RLKNEKKILLILDNTWK 218 (790)
Q Consensus 202 ~l~~~kr~LlVlDdv~~ 218 (790)
...+ +--|+|+|.+-.
T Consensus 137 ~~~~-~i~LvVVDSvaa 152 (279)
T COG0468 137 SGAE-KIDLLVVDSVAA 152 (279)
T ss_pred hccC-CCCEEEEecCcc
Confidence 3332 357889998743
No 324
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.13 E-value=0.02 Score=56.10 Aligned_cols=27 Identities=33% Similarity=0.350 Sum_probs=24.4
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.+..+|+|.|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 325
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.21 Score=56.18 Aligned_cols=131 Identities=18% Similarity=0.170 Sum_probs=76.0
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcC
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNE 206 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 206 (790)
..+.+.++|++|.|||+||+++++.... +|-.+. .. ++... +.. .....+..++..-.+.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~--~fi~v~-----~~--------~l~sk----~vG-esek~ir~~F~~A~~~ 334 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRS--RFISVK-----GS--------ELLSK----WVG-ESEKNIRELFEKARKL 334 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCC--eEEEee-----CH--------HHhcc----ccc-hHHHHHHHHHHHHHcC
Confidence 4568999999999999999999985432 232222 11 11111 011 1123445555555556
Q ss_pred CcEEEEEeCCCCccCccc-------------cCccCCC--CCCCcEEEEEeCChhHHhh-h----CCCceEEccCCCHHH
Q 039180 207 KKILLILDNTWKSLDLGT-------------IGIPFGV--EHRGCKLLFTTRDLDVLIR-M----GSEKNFSIGILNEQE 266 (790)
Q Consensus 207 kr~LlVlDdv~~~~~~~~-------------l~~~~~~--~~~gs~iliTtR~~~v~~~-~----~~~~~~~l~~L~~~~ 266 (790)
....|.+|+++....+.. +...+.. ...+..||-||......+. + .-...+.+..-+.++
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 789999999976532221 1111111 1223334445544333222 1 224588899999999
Q ss_pred HHHHHHHHhCC
Q 039180 267 AWRLFKIIAGA 277 (790)
Q Consensus 267 ~~~Lf~~~~~~ 277 (790)
..+.|+.+...
T Consensus 415 r~~i~~~~~~~ 425 (494)
T COG0464 415 RLEIFKIHLRD 425 (494)
T ss_pred HHHHHHHHhcc
Confidence 99999998864
No 326
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.12 E-value=0.094 Score=49.18 Aligned_cols=115 Identities=12% Similarity=0.060 Sum_probs=56.5
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccC---C---CEEEEEEeCCCCCHHHHHHHHHHHhCCCCchh-HHHHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDEL---Y---DMVVFSEVTQSPDIKQIQQEIAEKLGLELSEE-AEFRRASRMF 200 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~---f---~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~l~ 200 (790)
=.+++|+|..|.|||||++.++........ + ..+.++.-........+.+.+.-. ....- ......-.+.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~la 103 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLAFA 103 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHHHH
Confidence 457999999999999999999876432210 1 112222111111111233333211 11111 1122233444
Q ss_pred HHHHcCCcEEEEEeCCCCccCc---cccCccCCCCCCCcEEEEEeCChhHH
Q 039180 201 ERLKNEKKILLILDNTWKSLDL---GTIGIPFGVEHRGCKLLFTTRDLDVL 248 (790)
Q Consensus 201 ~~l~~~kr~LlVlDdv~~~~~~---~~l~~~~~~~~~gs~iliTtR~~~v~ 248 (790)
..+.. ++=++++|+....-+. ..+...+... +..||++|.+....
T Consensus 104 ral~~-~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 104 RLLLH-KPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHc-CCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 55554 5568899997654321 1121222111 35688888876554
No 327
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.12 E-value=0.17 Score=50.60 Aligned_cols=86 Identities=19% Similarity=0.311 Sum_probs=52.3
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCch-----------------
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSE----------------- 189 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----------------- 189 (790)
.-.++.|.|.+|+|||++|.++....... =..++|++..+. ..++.+.+ .+++....+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 35789999999999999999986653222 356888888654 45555543 333322111
Q ss_pred ----hHHHHHHHHHHHHHHcCCcEEEEEeCCC
Q 039180 190 ----EAEFRRASRMFERLKNEKKILLILDNTW 217 (790)
Q Consensus 190 ----~~~~~~~~~l~~~l~~~kr~LlVlDdv~ 217 (790)
....+.+..+.+.+.+.+.-++|+|.+.
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 1112334455555544345588899875
No 328
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.09 E-value=0.25 Score=54.27 Aligned_cols=162 Identities=15% Similarity=0.145 Sum_probs=92.2
Q ss_pred EEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCch-----hHHHHHHHHHHHHHH--
Q 039180 132 GVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSE-----EAEFRRASRMFERLK-- 204 (790)
Q Consensus 132 ~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~l~~~l~-- 204 (790)
...|+-|+||||+|+.++..+--... ...+++..-...+.|...-..+... ....+.+..+.+...
T Consensus 42 lfsG~RGvGKTt~Ari~AkalNC~~~-------~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~ 114 (515)
T COG2812 42 LFSGPRGVGKTTIARILAKALNCENG-------PTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYA 114 (515)
T ss_pred hhcCCCCcCchhHHHHHHHHhcCCCC-------CCCCcchhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccC
Confidence 46799999999999999876532210 1111222222223333221111000 011233444555443
Q ss_pred --cCCcEEEEEeCCCC--ccCccccCccCCCCCCCcEEEE-EeCChhHHhh-hCCCceEEccCCCHHHHHHHHHHHhCCC
Q 039180 205 --NEKKILLILDNTWK--SLDLGTIGIPFGVEHRGCKLLF-TTRDLDVLIR-MGSEKNFSIGILNEQEAWRLFKIIAGAY 278 (790)
Q Consensus 205 --~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~ili-TtR~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~ 278 (790)
.++--+.|+|+|-- ...|.++...+-........|+ ||-...+... ....+.+.+..++.++-...+...+...
T Consensus 115 P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E 194 (515)
T COG2812 115 PSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKE 194 (515)
T ss_pred CccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhc
Confidence 45667889999853 3566666665544444555444 5554555444 6677899999999998888888777533
Q ss_pred CCCcchHHHHHHHHHHhcCCcHH
Q 039180 279 VENRELKSTATSVAKACRGLPIA 301 (790)
Q Consensus 279 ~~~~~~~~~~~~i~~~~~glPla 301 (790)
.... .++...-|++..+|...-
T Consensus 195 ~I~~-e~~aL~~ia~~a~Gs~RD 216 (515)
T COG2812 195 GINI-EEDALSLIARAAEGSLRD 216 (515)
T ss_pred CCcc-CHHHHHHHHHHcCCChhh
Confidence 3322 245566677777775543
No 329
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.09 E-value=0.019 Score=54.28 Aligned_cols=28 Identities=32% Similarity=0.306 Sum_probs=24.9
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhh
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIE 154 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~ 154 (790)
...+|+|-||-|+||||||+.++++...
T Consensus 3 ~~~~IvI~G~IG~GKSTLa~~La~~l~~ 30 (216)
T COG1428 3 VAMVIVIEGMIGAGKSTLAQALAEHLGF 30 (216)
T ss_pred cccEEEEecccccCHHHHHHHHHHHhCC
Confidence 3578999999999999999999999753
No 330
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.04 E-value=0.026 Score=55.28 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARR 151 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~ 151 (790)
.+++.|+|+.|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 488999999999999999998743
No 331
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.02 E-value=0.081 Score=52.35 Aligned_cols=123 Identities=22% Similarity=0.215 Sum_probs=68.9
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCC-----CCCHHHHHHHHHHHhCCCCch-------hHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQ-----SPDIKQIQQEIAEKLGLELSE-------EAEFR 194 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 194 (790)
.-.+++++|.+|.||||+++.+..-.+. -...+++.-.+ .....+...++++.++..... -+.-+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~p---t~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEP---TSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCC---CCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 4467999999999999999999865532 33344443222 222344556667776654221 11222
Q ss_pred HHH-HHHHHHHcCCcEEEEEeCCCCccCc---cccCccCCC--CCCCcEEEEEeCChhHHhhhCC
Q 039180 195 RAS-RMFERLKNEKKILLILDNTWKSLDL---GTIGIPFGV--EHRGCKLLFTTRDLDVLIRMGS 253 (790)
Q Consensus 195 ~~~-~l~~~l~~~kr~LlVlDdv~~~~~~---~~l~~~~~~--~~~gs~iliTtR~~~v~~~~~~ 253 (790)
.+. .+.+.+. -+.-++|.|+.-+.-+. ..+...+.+ ...|-..++.|-+-.++..+..
T Consensus 115 rQRi~IARALa-l~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 115 RQRIGIARALA-LNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhHHHHHHHh-hCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 232 2333333 46789999997655322 111111111 2235567888888777777544
No 332
>PRK06696 uridine kinase; Validated
Probab=95.02 E-value=0.023 Score=56.30 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=25.3
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhh
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIE 154 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~ 154 (790)
...+|+|.|.+|+||||+|+.+++....
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999988753
No 333
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.99 E-value=0.032 Score=52.35 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=33.5
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPD 171 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 171 (790)
..++.+.|+.|+|||.+|+.+++.... +.....+-+++++-..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcccc
Confidence 567899999999999999999998852 2255677777776544
No 334
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.99 E-value=0.49 Score=48.72 Aligned_cols=154 Identities=14% Similarity=0.051 Sum_probs=87.6
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh--------hhccCCCEEEEEEe-CCCCCHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA--------IEDELYDMVVFSEV-TQSPDIKQIQQEIAEKLGLELSEEAEFRRASR 198 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~--------~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 198 (790)
.++..++|..|.||+++|..+.+.. ....|-+-+.+++. +......++. ++.+.+.....
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~~~---------- 86 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFSSF---------- 86 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccCCc----------
Confidence 4778899999999999999999886 22222222333332 2223333332 23333322110
Q ss_pred HHHHHHcCCcEEEEEeCCCCcc--CccccCccCCCCCCCcEEEEEeC-ChhHHhh-hCCCceEEccCCCHHHHHHHHHHH
Q 039180 199 MFERLKNEKKILLILDNTWKSL--DLGTIGIPFGVEHRGCKLLFTTR-DLDVLIR-MGSEKNFSIGILNEQEAWRLFKII 274 (790)
Q Consensus 199 l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR-~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~ 274 (790)
..+.+-++|+|+++... ...++...+-....++.+|++|. ...+... ....+.+++.++++++..+.+...
T Consensus 87 -----~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~ 161 (299)
T PRK07132 87 -----VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK 161 (299)
T ss_pred -----ccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc
Confidence 11467788999986553 23344444444455666666554 4444443 455789999999999998777653
Q ss_pred hCCCCCCcchHHHHHHHHHHhcCCcHHHHH
Q 039180 275 AGAYVENRELKSTATSVAKACRGLPIALTI 304 (790)
Q Consensus 275 ~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 304 (790)
+ .+ ++.+..++...+|.-.|+..
T Consensus 162 -~---~~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 162 -N---KE---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred -C---CC---hhHHHHHHHHcCCHHHHHHH
Confidence 1 11 23355555555653234443
No 335
>PRK06762 hypothetical protein; Provisional
Probab=94.98 E-value=0.023 Score=53.43 Aligned_cols=24 Identities=38% Similarity=0.584 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.+|.|+|+.|+||||+|+.+.+..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999876
No 336
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.98 E-value=0.091 Score=49.58 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
=.+++|+|..|.|||||.+.++.-..
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 35799999999999999999987643
No 337
>PRK04328 hypothetical protein; Provisional
Probab=94.92 E-value=0.13 Score=51.80 Aligned_cols=40 Identities=18% Similarity=0.301 Sum_probs=30.8
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQS 169 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 169 (790)
-.++.|.|.+|+|||++|.++....... -..++|++..+.
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee~ 62 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALEEH 62 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEeeCC
Confidence 4789999999999999999987664222 356788887663
No 338
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.91 E-value=0.19 Score=51.92 Aligned_cols=85 Identities=21% Similarity=0.254 Sum_probs=49.9
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCch------hHHHHHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSE------EAEFRRASRMFE 201 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~~ 201 (790)
-+++-|+|..|+||||||..+....... -..++||+....++.. .++.+|.+... ....+.+..+..
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e~ 125 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAEQ 125 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcc--cceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHHH
Confidence 3689999999999999999888765332 4568899998877654 34555554221 111222222222
Q ss_pred HHHcCCcEEEEEeCCCCc
Q 039180 202 RLKNEKKILLILDNTWKS 219 (790)
Q Consensus 202 ~l~~~kr~LlVlDdv~~~ 219 (790)
-++.+.--++|+|-|-..
T Consensus 126 lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 126 LIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHTTSESEEEEE-CTT-
T ss_pred HhhcccccEEEEecCccc
Confidence 344555568999998655
No 339
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.89 E-value=0.023 Score=54.61 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=23.5
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
+.++|+|.|++|+||||+|+.++...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999998764
No 340
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=94.88 E-value=1.3 Score=47.15 Aligned_cols=101 Identities=13% Similarity=0.139 Sum_probs=66.7
Q ss_pred cEEEEEeCCCCc-----------cCccccCccCCCCCCCcEEEEEeCChhHHhh----h--CCCceEEccCCCHHHHHHH
Q 039180 208 KILLILDNTWKS-----------LDLGTIGIPFGVEHRGCKLLFTTRDLDVLIR----M--GSEKNFSIGILNEQEAWRL 270 (790)
Q Consensus 208 r~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~iliTtR~~~v~~~----~--~~~~~~~l~~L~~~~~~~L 270 (790)
|=+||+|++-.. .+|.+.. -..+-.+||++|-+...... + .....+.+...+.+.|.++
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~L----v~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASL----VQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHH----HhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 568999998543 2343321 12345679998887544443 3 2346888999999999999
Q ss_pred HHHHhCCCCCC-------------------cchHHHHHHHHHHhcCCcHHHHHHHHHHhcC
Q 039180 271 FKIIAGAYVEN-------------------RELKSTATSVAKACRGLPIALTIVVKALRNK 312 (790)
Q Consensus 271 f~~~~~~~~~~-------------------~~~~~~~~~i~~~~~glPlai~~~~~~l~~~ 312 (790)
...+....... .....-....++.+||==.-+..+++.++..
T Consensus 225 V~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksG 285 (431)
T PF10443_consen 225 VLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSG 285 (431)
T ss_pred HHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcC
Confidence 98887532100 1233445667888888888888888888744
No 341
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=94.87 E-value=0.72 Score=51.55 Aligned_cols=147 Identities=16% Similarity=0.112 Sum_probs=88.4
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhh---c---cCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIE---D---ELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRM 199 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~---~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l 199 (790)
+.-..+-|.|.+|+|||..+..|.+.+.. + ..|+ .+.|+.-.-..+.+++..|...+....... ...+..+
T Consensus 420 ~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~Y~~I~~~lsg~~~~~--~~al~~L 496 (767)
T KOG1514|consen 420 GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREIYEKIWEALSGERVTW--DAALEAL 496 (767)
T ss_pred CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHHHHHHHHhcccCcccH--HHHHHHH
Confidence 44459999999999999999999986541 1 2354 345666666789999999999987653321 1122333
Q ss_pred HHHHH----cCCcEEEEEeCCCCccC--ccccCccCCC-CCCCcEEEEEeCC--hh---------HHhhhCCCceEEccC
Q 039180 200 FERLK----NEKKILLILDNTWKSLD--LGTIGIPFGV-EHRGCKLLFTTRD--LD---------VLIRMGSEKNFSIGI 261 (790)
Q Consensus 200 ~~~l~----~~kr~LlVlDdv~~~~~--~~~l~~~~~~-~~~gs~iliTtR~--~~---------v~~~~~~~~~~~l~~ 261 (790)
..++. ..+..++++|+++..-. -+.+...|.+ ..++||++|-+=- .+ ++..++ ...+...+
T Consensus 497 ~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg-~tRi~F~p 575 (767)
T KOG1514|consen 497 NFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLG-LTRICFQP 575 (767)
T ss_pred HHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCHHHHhccchhhhcc-ceeeecCC
Confidence 33333 23678999999865521 1112222222 4567876664421 11 111112 24667777
Q ss_pred CCHHHHHHHHHHHhC
Q 039180 262 LNEQEAWRLFKIIAG 276 (790)
Q Consensus 262 L~~~~~~~Lf~~~~~ 276 (790)
.++++..++...+..
T Consensus 576 Yth~qLq~Ii~~RL~ 590 (767)
T KOG1514|consen 576 YTHEQLQEIISARLK 590 (767)
T ss_pred CCHHHHHHHHHHhhc
Confidence 787777777666553
No 342
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.86 E-value=0.012 Score=33.98 Aligned_cols=19 Identities=26% Similarity=0.223 Sum_probs=9.1
Q ss_pred cceeeccCccccccchhhhh
Q 039180 526 LQTLCLDQSILRDIDIAIIG 545 (790)
Q Consensus 526 L~~L~L~~~~l~~l~p~~i~ 545 (790)
|++|+|++|.++.+ |++|+
T Consensus 2 L~~Ldls~n~l~~i-p~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSI-PSSFS 20 (22)
T ss_dssp ESEEEETSSEESEE-GTTTT
T ss_pred ccEEECCCCcCEeC-Chhhc
Confidence 45555555555543 44343
No 343
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.83 E-value=0.14 Score=46.88 Aligned_cols=24 Identities=25% Similarity=0.582 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
+|.|+|.+|+||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998865
No 344
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.83 E-value=0.029 Score=53.79 Aligned_cols=29 Identities=38% Similarity=0.432 Sum_probs=25.6
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhh
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIE 154 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~ 154 (790)
..+.+|+|.|.+|+||||+|+.+++.+..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~ 34 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGV 34 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 45689999999999999999999998753
No 345
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.82 E-value=0.21 Score=46.48 Aligned_cols=119 Identities=21% Similarity=0.123 Sum_probs=66.3
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEE-EEEeCCCCCHHHHHHHHH---HHhCCC-----CchhHHHH---
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVV-FSEVTQSPDIKQIQQEIA---EKLGLE-----LSEEAEFR--- 194 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~-wv~~~~~~~~~~~~~~i~---~~l~~~-----~~~~~~~~--- 194 (790)
..++|-|++..|.||||.|..++-+......--.++ |+--........+++.+. .+.+.. .....+..
T Consensus 4 ~~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 4 ERGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred cccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 357888999999999999999888765443222222 332222233334443320 001110 01111112
Q ss_pred -HHHHHHHHHHcCCcEEEEEeCCCCc-----cCccccCccCCCCCCCcEEEEEeCCh
Q 039180 195 -RASRMFERLKNEKKILLILDNTWKS-----LDLGTIGIPFGVEHRGCKLLFTTRDL 245 (790)
Q Consensus 195 -~~~~l~~~l~~~kr~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~iliTtR~~ 245 (790)
......+.+.+++-=++|||.+-.. -+.+++...+.....+..||+|-|+.
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 2234444555566779999998543 23334445554556677899999984
No 346
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.81 E-value=0.15 Score=48.40 Aligned_cols=28 Identities=29% Similarity=0.382 Sum_probs=24.5
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhh
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIE 154 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~ 154 (790)
.-.+|.|+|.+|+||||+|+.++.....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999988753
No 347
>PRK06547 hypothetical protein; Provisional
Probab=94.80 E-value=0.029 Score=52.78 Aligned_cols=27 Identities=33% Similarity=0.334 Sum_probs=24.0
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
....+|+|.|.+|+||||+|+.+.+..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999999874
No 348
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.80 E-value=0.21 Score=50.67 Aligned_cols=40 Identities=25% Similarity=0.448 Sum_probs=30.7
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQS 169 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 169 (790)
-.++.|.|.+|+|||++|.+++.....+ -..+++++...+
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee~ 75 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVESP 75 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecCC
Confidence 4689999999999999999987764322 346788887643
No 349
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.79 E-value=0.056 Score=53.38 Aligned_cols=22 Identities=27% Similarity=0.635 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHhHHHHHHHHHh
Q 039180 131 IGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 131 v~I~G~~G~GKTtLa~~~~~~~ 152 (790)
|.|.|++|+||||+|+.+++..
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999998875
No 350
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.79 E-value=0.11 Score=49.17 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
=.+++|+|..|.|||||++.++...
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3589999999999999999998764
No 351
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.79 E-value=0.04 Score=50.32 Aligned_cols=35 Identities=31% Similarity=0.408 Sum_probs=28.2
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEE
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSE 165 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~ 165 (790)
.+|-++|.+|+||||||+++..++... -..+.+++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~--g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFAR--GIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT--TS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEec
Confidence 578999999999999999999998765 34455554
No 352
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.76 E-value=0.059 Score=48.01 Aligned_cols=103 Identities=18% Similarity=0.307 Sum_probs=53.6
Q ss_pred CCChhhhccCCceEEEEecCccccCCC-hhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchh-hh
Q 039180 491 NIPENFFKGVKKLRVVALVKMLLSSLP-SSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKA-LG 568 (790)
Q Consensus 491 ~lp~~~~~~l~~L~~L~L~~~~~~~lp-~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~-l~ 568 (790)
.++...|.+++.|+.+.+.++ +..++ ..+.++..|+.+.+.. .+..+....+..+++|+.+++..+ +..++.. +.
T Consensus 25 ~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~ 101 (129)
T PF13306_consen 25 KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFS 101 (129)
T ss_dssp EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTT
T ss_pred EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhc
Confidence 466777888888888888774 65553 3566776888888865 444443556777888988888765 5555443 45
Q ss_pred cccccceecCCccccccccCchhhccccccc
Q 039180 569 ELTKLRLSDLTDCFHLKVIAPNVISSLTRLE 599 (790)
Q Consensus 569 ~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~ 599 (790)
++ +|+.+.+.. .+..++...+.++++|+
T Consensus 102 ~~-~l~~i~~~~--~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 102 NC-NLKEINIPS--NITKIEENAFKNCTKLK 129 (129)
T ss_dssp T--T--EEE-TT--B-SS----GGG------
T ss_pred CC-CceEEEECC--CccEECCccccccccCC
Confidence 55 788887765 45566666677777664
No 353
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.75 E-value=0.06 Score=55.68 Aligned_cols=49 Identities=22% Similarity=0.322 Sum_probs=37.9
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQE 178 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 178 (790)
.+++.+.|.|||||||+|.+.+-.....+ ..+.-|+.....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchHhhhcc
Confidence 57899999999999999999777765543 44777877777776665554
No 354
>PRK03839 putative kinase; Provisional
Probab=94.73 E-value=0.027 Score=53.74 Aligned_cols=24 Identities=42% Similarity=0.578 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
.|.|.|++|+||||+|+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999863
No 355
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.72 E-value=0.028 Score=54.96 Aligned_cols=27 Identities=33% Similarity=0.334 Sum_probs=23.8
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
.-.+|+|+|++|+||||||+.++....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 347899999999999999999998754
No 356
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.71 E-value=0.037 Score=53.65 Aligned_cols=110 Identities=9% Similarity=0.111 Sum_probs=54.9
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHH-HHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIK-QIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
++|.|+|+.|+||||++..+....... ....+++- .++.... .-...+..+-..... .......+...+.. .
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~--~~~~i~t~-e~~~E~~~~~~~~~i~q~~vg~~---~~~~~~~i~~aLr~-~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKN--KTHHILTI-EDPIEFVHESKRSLINQREVGLD---TLSFENALKAALRQ-D 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhc--CCcEEEEE-cCCccccccCccceeeecccCCC---ccCHHHHHHHHhcC-C
Confidence 579999999999999999887765322 23233321 1111100 000011111000000 11112334444544 3
Q ss_pred cEEEEEeCCCCccCccccCccCCCCCCCcEEEEEeCChhHH
Q 039180 208 KILLILDNTWKSLDLGTIGIPFGVEHRGCKLLFTTRDLDVL 248 (790)
Q Consensus 208 r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtR~~~v~ 248 (790)
.=.|++|++.+.+........ ...|..++.|+-...+.
T Consensus 75 pd~ii~gEird~e~~~~~l~~---a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 75 PDVILVGEMRDLETIRLALTA---AETGHLVMSTLHTNSAA 112 (198)
T ss_pred cCEEEEcCCCCHHHHHHHHHH---HHcCCEEEEEecCCcHH
Confidence 458999999877654432222 22355577777655443
No 357
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.70 E-value=0.044 Score=54.59 Aligned_cols=51 Identities=24% Similarity=0.264 Sum_probs=40.6
Q ss_pred CCceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHH
Q 039180 125 DIWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQI 175 (790)
Q Consensus 125 ~~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 175 (790)
.++..+|+|.|.+|+|||||.-.+...+..+++--.++=|+-|.+++--.+
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsi 98 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSI 98 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccc
Confidence 357889999999999999999999999877766666777766666654433
No 358
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=94.70 E-value=0.31 Score=49.47 Aligned_cols=147 Identities=22% Similarity=0.185 Sum_probs=81.4
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCC-HHHHHHHHHHHhCCCCch-----hHHHHHHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPD-IKQIQQEIAEKLGLELSE-----EAEFRRASRMF 200 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~-----~~~~~~~~~l~ 200 (790)
+..-|.|+|+.|.|||+|......+. +..-+..+-|......- -+-.++.|.+++...... .+-.+....+.
T Consensus 48 EsnsviiigprgsgkT~li~~~Ls~~--q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL 125 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTILIDTRLSDI--QENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLL 125 (408)
T ss_pred CCCceEEEccCCCCceEeeHHHHhhH--HhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHH
Confidence 45668899999999999988777662 22123334444443322 223455666655332111 12223455666
Q ss_pred HHHHc-----CCcEEEEEeCCCCccC-------ccccCccCCCCCCCcEEEEEeCChh-------HHhhhCCCceEEccC
Q 039180 201 ERLKN-----EKKILLILDNTWKSLD-------LGTIGIPFGVEHRGCKLLFTTRDLD-------VLIRMGSEKNFSIGI 261 (790)
Q Consensus 201 ~~l~~-----~kr~LlVlDdv~~~~~-------~~~l~~~~~~~~~gs~iliTtR~~~-------v~~~~~~~~~~~l~~ 261 (790)
..+.. +-++++|+|+++--.. ..-+...-....+-|-|-+|||-.- |-.......++-++.
T Consensus 126 ~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~ 205 (408)
T KOG2228|consen 126 EALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPS 205 (408)
T ss_pred HHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCC
Confidence 66653 2458999998864321 1111111122455677889999632 222233333555666
Q ss_pred CCHHHHHHHHHHHh
Q 039180 262 LNEQEAWRLFKIIA 275 (790)
Q Consensus 262 L~~~~~~~Lf~~~~ 275 (790)
++-++-..++++..
T Consensus 206 ~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 206 LPLGDYVDLYRKLL 219 (408)
T ss_pred CChHHHHHHHHHHh
Confidence 77888888877765
No 359
>PRK13768 GTPase; Provisional
Probab=94.68 E-value=0.21 Score=50.35 Aligned_cols=37 Identities=30% Similarity=0.345 Sum_probs=27.4
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEe
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEV 166 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~ 166 (790)
..++.|.|.+|+||||++..+.......+ ..++.++.
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g--~~v~~i~~ 38 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQG--YDVAIVNL 38 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcC--CceEEEEC
Confidence 35789999999999999999888775432 23445544
No 360
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.64 E-value=0.043 Score=49.58 Aligned_cols=39 Identities=23% Similarity=0.375 Sum_probs=28.8
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCC
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQ 168 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 168 (790)
++|.|+|..|+|||||++.+.+....+ .+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~-g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR-GYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc-CCceEEEEEccC
Confidence 589999999999999999999998754 355555665554
No 361
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.62 E-value=0.14 Score=51.76 Aligned_cols=25 Identities=40% Similarity=0.690 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhhh
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAIE 154 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~~ 154 (790)
+|.++|.+|+||||+|++++.....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999988753
No 362
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.61 E-value=0.086 Score=53.39 Aligned_cols=113 Identities=18% Similarity=0.102 Sum_probs=62.5
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEE---eCCCCCHHHHHHHHHHHhCC-CC-------chhHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSE---VTQSPDIKQIQQEIAEKLGL-EL-------SEEAEFRR 195 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~---~~~~~~~~~~~~~i~~~l~~-~~-------~~~~~~~~ 195 (790)
..+-++|.|..|.||||+.+.++..... ....+++. +...... .+++..... +. ...+....
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~~~---~~G~i~~~g~~v~~~d~~----~ei~~~~~~~~q~~~~~r~~v~~~~~k 182 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARILST---GISQLGLRGKKVGIVDER----SEIAGCVNGVPQHDVGIRTDVLDGCPK 182 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCccCC---CCceEEECCEEeecchhH----HHHHHHhcccccccccccccccccchH
Confidence 3467999999999999999999977643 22333332 1111112 233322211 10 00011112
Q ss_pred HHHHHHHHHcCCcEEEEEeCCCCccCccccCccCCCCCCCcEEEEEeCChhHHh
Q 039180 196 ASRMFERLKNEKKILLILDNTWKSLDLGTIGIPFGVEHRGCKLLFTTRDLDVLI 249 (790)
Q Consensus 196 ~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtR~~~v~~ 249 (790)
...+...+....+-++|+|++...+.+..+...+ ..|..||+||....+..
T Consensus 183 ~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 183 AEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDVED 233 (270)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHHHH
Confidence 2233444443356799999997766555554443 24778999998755533
No 363
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.58 E-value=0.11 Score=48.68 Aligned_cols=46 Identities=24% Similarity=0.273 Sum_probs=32.8
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHH
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAE 181 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 181 (790)
++.|.|..|+|||++|.++.... ...++++.-...++. ++.+.|.+
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~-----~~~~~y~at~~~~d~-em~~rI~~ 46 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAEL-----GGPVTYIATAEAFDD-EMAERIAR 46 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEccCcCCH-HHHHHHHH
Confidence 36799999999999999997651 235677766666654 35555544
No 364
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.54 E-value=0.15 Score=50.82 Aligned_cols=76 Identities=20% Similarity=0.236 Sum_probs=45.4
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCC--CHHHHHHHHHHH----hCCCC--chhHHHHHHHHHHH
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSP--DIKQIQQEIAEK----LGLEL--SEEAEFRRASRMFE 201 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~----l~~~~--~~~~~~~~~~~l~~ 201 (790)
+|+|.|.+|+||||+|+++...+...+ ..+..++...-. +.....+.+... ...+. ++..+.+.+...++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREG--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcC--CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 589999999999999999998775432 124455443322 222322222222 22233 44556667777777
Q ss_pred HHHcCC
Q 039180 202 RLKNEK 207 (790)
Q Consensus 202 ~l~~~k 207 (790)
.+.+++
T Consensus 79 ~L~~g~ 84 (277)
T cd02029 79 TYGETG 84 (277)
T ss_pred HHHcCC
Confidence 777654
No 365
>PRK04040 adenylate kinase; Provisional
Probab=94.53 E-value=0.034 Score=53.21 Aligned_cols=26 Identities=27% Similarity=0.526 Sum_probs=23.3
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
..+|+|+|++|+||||+++.+.+...
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 36899999999999999999998863
No 366
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.53 E-value=0.2 Score=54.50 Aligned_cols=90 Identities=23% Similarity=0.335 Sum_probs=57.7
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCC-------CchhHHH------
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQS-PDIKQIQQEIAEKLGLE-------LSEEAEF------ 193 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~------ 193 (790)
=..++|.|.+|+|||||+..+....... +-+.++++-+.+. ..+.++..++...-... ..+++..
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 3458999999999999999988876533 5677788777654 34556666665432211 1111111
Q ss_pred HHHHHHHHHHH-c-CCcEEEEEeCCCC
Q 039180 194 RRASRMFERLK-N-EKKILLILDNTWK 218 (790)
Q Consensus 194 ~~~~~l~~~l~-~-~kr~LlVlDdv~~ 218 (790)
.....+.+.++ + ++++|+++|++..
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccchH
Confidence 12334555554 3 7999999999843
No 367
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.50 E-value=0.1 Score=49.68 Aligned_cols=117 Identities=22% Similarity=0.270 Sum_probs=61.6
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEE---eCCCCCHHHHHHH------HHHHhCCCCc------hhH-
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSE---VTQSPDIKQIQQE------IAEKLGLELS------EEA- 191 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~---~~~~~~~~~~~~~------i~~~l~~~~~------~~~- 191 (790)
=.+++|.|..|.|||||++.++..... ....+++. +.. .+....... +++.++.... .-+
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~~---~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLKP---SSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 458999999999999999999875432 33334332 221 122222211 3444444311 111
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEeCCCCccC---ccccCccCCC-CCC-CcEEEEEeCChhHHh
Q 039180 192 EFRRASRMFERLKNEKKILLILDNTWKSLD---LGTIGIPFGV-EHR-GCKLLFTTRDLDVLI 249 (790)
Q Consensus 192 ~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~---~~~l~~~~~~-~~~-gs~iliTtR~~~v~~ 249 (790)
.....-.+...+.. .+-++++|+....-+ .+.+...+.. ... +..||++|.+.+...
T Consensus 101 G~~qrl~laral~~-~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 101 GERQRVLLARALAQ-EPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 11222344555554 567999999865432 2222222211 122 567888888765443
No 368
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.49 E-value=0.032 Score=50.12 Aligned_cols=47 Identities=32% Similarity=0.483 Sum_probs=36.3
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCch
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSE 189 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 189 (790)
+|.|.|++|+||||+|+.++++.--. .+ +.-.++++|++..+++..+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~v------saG~iFR~~A~e~gmsl~e 48 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------LV------SAGTIFREMARERGMSLEE 48 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------ee------eccHHHHHHHHHcCCCHHH
Confidence 68999999999999999999986322 11 2235789999998887543
No 369
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.47 E-value=0.15 Score=49.70 Aligned_cols=85 Identities=29% Similarity=0.475 Sum_probs=53.3
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCC-------CchhHHH------H
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQS-PDIKQIQQEIAEKLGLE-------LSEEAEF------R 194 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~------~ 194 (790)
.-++|.|.+|+|||+|+..+.+... -+.++++.+++. ....++.+++...-... ..+++.. .
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 4588999999999999999998864 345578888755 45566666664331111 1111111 1
Q ss_pred HHHHHHHHHH-cCCcEEEEEeCCC
Q 039180 195 RASRMFERLK-NEKKILLILDNTW 217 (790)
Q Consensus 195 ~~~~l~~~l~-~~kr~LlVlDdv~ 217 (790)
..-.+.+.+. +++++|+++||+.
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dslt 115 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETHH
T ss_pred cchhhhHHHhhcCCceeehhhhhH
Confidence 1223344444 5899999999973
No 370
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.45 E-value=0.056 Score=50.54 Aligned_cols=115 Identities=17% Similarity=0.205 Sum_probs=58.0
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCC--CCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHc
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQS--PDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKN 205 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 205 (790)
=.+++|.|..|.|||||.+.++.... .....+++.-... .+..+.. .+.++....-.......-.+...+..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~---~~~i~~~~qLS~G~~qrl~laral~~ 99 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYK---PDSGEILVDGKEVSFASPRDAR---RAGIAMVYQLSVGERQMVEIARALAR 99 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCcCCHHHHH---hcCeEEEEecCHHHHHHHHHHHHHhc
Confidence 35799999999999999999986542 2344455432111 1111111 11111100001111222334444554
Q ss_pred CCcEEEEEeCCCCccC---ccccCccCCC-CCCCcEEEEEeCChhHHh
Q 039180 206 EKKILLILDNTWKSLD---LGTIGIPFGV-EHRGCKLLFTTRDLDVLI 249 (790)
Q Consensus 206 ~kr~LlVlDdv~~~~~---~~~l~~~~~~-~~~gs~iliTtR~~~v~~ 249 (790)
++-++++|+....-+ ...+...+.. ...|..||++|.+.....
T Consensus 100 -~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 100 -NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred -CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 457888999865432 1122122211 123567888888865443
No 371
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.45 E-value=0.1 Score=55.94 Aligned_cols=72 Identities=21% Similarity=0.186 Sum_probs=47.3
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
.+=|.++|++|.|||-||++++-...+. +|...+..|+..-+ - ....++..++..-+..-
T Consensus 337 PKGVLLvGPPGTGKTlLARAvAGEA~VP------FF~~sGSEFdEm~V------G--------vGArRVRdLF~aAk~~A 396 (752)
T KOG0734|consen 337 PKGVLLVGPPGTGKTLLARAVAGEAGVP------FFYASGSEFDEMFV------G--------VGARRVRDLFAAAKARA 396 (752)
T ss_pred CCceEEeCCCCCchhHHHHHhhcccCCC------eEeccccchhhhhh------c--------ccHHHHHHHHHHHHhcC
Confidence 3558899999999999999999776443 22333333332211 1 11234566666666667
Q ss_pred cEEEEEeCCCCc
Q 039180 208 KILLILDNTWKS 219 (790)
Q Consensus 208 r~LlVlDdv~~~ 219 (790)
+++|.+|+++..
T Consensus 397 PcIIFIDEiDav 408 (752)
T KOG0734|consen 397 PCIIFIDEIDAV 408 (752)
T ss_pred CeEEEEechhhh
Confidence 899999998765
No 372
>PRK07667 uridine kinase; Provisional
Probab=94.45 E-value=0.041 Score=53.04 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=24.9
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhh
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIE 154 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~ 154 (790)
...+|+|.|.+|+||||+|..+......
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4579999999999999999999988753
No 373
>PRK00625 shikimate kinase; Provisional
Probab=94.44 E-value=0.033 Score=52.35 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
.|.++|+.|+||||+++.+++...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998763
No 374
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.43 E-value=0.36 Score=47.99 Aligned_cols=73 Identities=25% Similarity=0.282 Sum_probs=48.9
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHH-HhCCCCchhHHHHHHHHHHHHHH
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAE-KLGLELSEEAEFRRASRMFERLK 204 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~-~l~~~~~~~~~~~~~~~l~~~l~ 204 (790)
...+=|.++|++|.|||.||++|+.... .-|++||.+. +.. .+|- ....+..+++-.+
T Consensus 164 ~PwrgiLLyGPPGTGKSYLAKAVATEAn-------STFFSvSSSD--------LvSKWmGE------SEkLVknLFemAR 222 (439)
T KOG0739|consen 164 KPWRGILLYGPPGTGKSYLAKAVATEAN-------STFFSVSSSD--------LVSKWMGE------SEKLVKNLFEMAR 222 (439)
T ss_pred CcceeEEEeCCCCCcHHHHHHHHHhhcC-------CceEEeehHH--------HHHHHhcc------HHHHHHHHHHHHH
Confidence 3467789999999999999999997653 1234444321 222 2221 1234566677667
Q ss_pred cCCcEEEEEeCCCCc
Q 039180 205 NEKKILLILDNTWKS 219 (790)
Q Consensus 205 ~~kr~LlVlDdv~~~ 219 (790)
+.|+-+|.+|.++..
T Consensus 223 e~kPSIIFiDEiDsl 237 (439)
T KOG0739|consen 223 ENKPSIIFIDEIDSL 237 (439)
T ss_pred hcCCcEEEeehhhhh
Confidence 789999999999754
No 375
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.37 E-value=0.24 Score=53.59 Aligned_cols=91 Identities=22% Similarity=0.381 Sum_probs=58.4
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CchhHH------H
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSP-DIKQIQQEIAEKLGLE-------LSEEAE------F 193 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~------~ 193 (790)
=..++|.|.+|+|||+|+..+...... .+-+.++++-+.+.. ...++.+++...-... ..+++. .
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~~-~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMVG-QHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 345889999999999999998877542 234678888887654 4556666655432211 111111 1
Q ss_pred HHHHHHHHHHHc--CCcEEEEEeCCCCc
Q 039180 194 RRASRMFERLKN--EKKILLILDNTWKS 219 (790)
Q Consensus 194 ~~~~~l~~~l~~--~kr~LlVlDdv~~~ 219 (790)
.....+.+.++. ++++|+++||+...
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecChHHH
Confidence 123456666654 79999999998543
No 376
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.36 E-value=0.16 Score=54.81 Aligned_cols=89 Identities=19% Similarity=0.272 Sum_probs=50.4
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC-------CchhHH-----HHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLE-------LSEEAE-----FRR 195 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~-----~~~ 195 (790)
=..++|+|..|+|||||++.+..... ....+++..-....++.++....+...... .+.... ...
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 34689999999999999988875432 223455554334455555544443332110 111111 112
Q ss_pred HHHHHHHHH-cCCcEEEEEeCCCCc
Q 039180 196 ASRMFERLK-NEKKILLILDNTWKS 219 (790)
Q Consensus 196 ~~~l~~~l~-~~kr~LlVlDdv~~~ 219 (790)
...+.+.+. +++++|+++||+...
T Consensus 242 a~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccchHHH
Confidence 233444443 479999999998543
No 377
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.36 E-value=0.061 Score=50.16 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=25.5
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhc
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIED 155 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~ 155 (790)
..++++|+|..|+|||||++.+......+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 56799999999999999999999887643
No 378
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.35 E-value=0.37 Score=48.46 Aligned_cols=91 Identities=24% Similarity=0.295 Sum_probs=57.2
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhh--hccCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCC-------chhHHH-----
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAI--EDELYDMVVFSEVTQSP-DIKQIQQEIAEKLGLEL-------SEEAEF----- 193 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~--~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~----- 193 (790)
..++|.|-.|+|||+|+..+.+... .+.+-+.++++-+.+.. ...++..++...-.... .+++..
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 4578999999999999999887653 12234678888887654 56666666655422211 111111
Q ss_pred -HHHHHHHHHHHc--CCcEEEEEeCCCCc
Q 039180 194 -RRASRMFERLKN--EKKILLILDNTWKS 219 (790)
Q Consensus 194 -~~~~~l~~~l~~--~kr~LlVlDdv~~~ 219 (790)
.....+.+.+.+ ++++|+++||+...
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 122345555553 69999999998543
No 379
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=94.34 E-value=0.074 Score=55.18 Aligned_cols=44 Identities=20% Similarity=0.309 Sum_probs=31.6
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQ 174 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 174 (790)
+++.+.|-||+||||+|.+.+-....++ ..+.-++.....++.+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dpa~~L~d 45 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRG--KRTLLVSTDPAHSLSD 45 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTT--S-EEEEESSTTTHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCC--CCeeEeecCCCccHHH
Confidence 6899999999999999998887766543 3355556555544443
No 380
>PLN02924 thymidylate kinase
Probab=94.31 E-value=0.37 Score=47.36 Aligned_cols=54 Identities=11% Similarity=0.034 Sum_probs=35.3
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAE 181 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 181 (790)
.-..|+|-|..|+||||+|+.+++..... .+..+.+-.-+......+..++++.
T Consensus 15 ~g~~IviEGiDGsGKsTq~~~L~~~l~~~-g~~v~~~~ep~~~~~~g~~ir~~l~ 68 (220)
T PLN02924 15 RGALIVLEGLDRSGKSTQCAKLVSFLKGL-GVAAELWRFPDRTTSVGQMISAYLS 68 (220)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCceeeeCCCCCChHHHHHHHHHh
Confidence 34679999999999999999999998754 3443333222222334444555544
No 381
>CHL00206 ycf2 Ycf2; Provisional
Probab=94.29 E-value=0.26 Score=61.39 Aligned_cols=27 Identities=33% Similarity=0.241 Sum_probs=23.0
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
-.+=|.++|++|+|||.||++++....
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~ 1655 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSY 1655 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcC
Confidence 344588999999999999999998764
No 382
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.28 E-value=0.18 Score=58.28 Aligned_cols=86 Identities=17% Similarity=0.209 Sum_probs=56.3
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCch------hHHHHHHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSE------EAEFRRASRMF 200 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~ 200 (790)
.-.++-|+|..|+||||||.+++...... -..++||+....++. ..+++++.+... ......+..+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 35788899999999999998876654322 355899998887774 366777765321 11122233333
Q ss_pred HHHHcCCcEEEEEeCCCCc
Q 039180 201 ERLKNEKKILLILDNTWKS 219 (790)
Q Consensus 201 ~~l~~~kr~LlVlDdv~~~ 219 (790)
..+.+++--|||+|.+...
T Consensus 132 ~lv~~~~~~LVVIDSI~aL 150 (790)
T PRK09519 132 MLIRSGALDIVVIDSVAAL 150 (790)
T ss_pred HHhhcCCCeEEEEcchhhh
Confidence 3344556789999998643
No 383
>PHA00729 NTP-binding motif containing protein
Probab=94.27 E-value=0.05 Score=52.90 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
...|.|+|.+|+||||||..+++..
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999999875
No 384
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.26 E-value=0.042 Score=48.54 Aligned_cols=42 Identities=24% Similarity=0.299 Sum_probs=30.6
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQ 176 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 176 (790)
.+-|.|.|-+|+||||+|.+++.... .-|+++++-.....+.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~-------~~~i~isd~vkEn~l~ 48 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTG-------LEYIEISDLVKENNLY 48 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhC-------CceEehhhHHhhhcch
Confidence 45688999999999999999996542 3477777654444433
No 385
>PRK13949 shikimate kinase; Provisional
Probab=94.25 E-value=0.082 Score=49.67 Aligned_cols=25 Identities=44% Similarity=0.375 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
+-|.|+|+.|+||||+++.++....
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999998863
No 386
>PRK15453 phosphoribulokinase; Provisional
Probab=94.23 E-value=0.25 Score=49.67 Aligned_cols=78 Identities=19% Similarity=0.219 Sum_probs=45.5
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCC--CHHHHHHHHH--HHh--CCCC--chhHHHHHHH
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSP--DIKQIQQEIA--EKL--GLEL--SEEAEFRRAS 197 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~--~~l--~~~~--~~~~~~~~~~ 197 (790)
....+|+|.|.+|+||||+|+.+.+...... ..+..++...-. +...+...+. +.- +.+. ++..+.+.+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~--~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~ 80 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRREN--INAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELE 80 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcC--CCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHH
Confidence 3567999999999999999999997664221 124445544322 3333333222 122 2223 3445556666
Q ss_pred HHHHHHHc
Q 039180 198 RMFERLKN 205 (790)
Q Consensus 198 ~l~~~l~~ 205 (790)
..++.+.+
T Consensus 81 ~~l~~l~~ 88 (290)
T PRK15453 81 QLFREYGE 88 (290)
T ss_pred HHHHHHhc
Confidence 66677764
No 387
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=0.15 Score=57.24 Aligned_cols=72 Identities=24% Similarity=0.314 Sum_probs=50.2
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
..=|.++|++|.|||-+|++|+.... .-|++|..+ +++.+- +| ..++.+.+++++-++.+
T Consensus 705 RSGILLYGPPGTGKTLlAKAVATEcs-------L~FlSVKGP----ELLNMY---VG------qSE~NVR~VFerAR~A~ 764 (953)
T KOG0736|consen 705 RSGILLYGPPGTGKTLLAKAVATECS-------LNFLSVKGP----ELLNMY---VG------QSEENVREVFERARSAA 764 (953)
T ss_pred cceeEEECCCCCchHHHHHHHHhhce-------eeEEeecCH----HHHHHH---hc------chHHHHHHHHHHhhccC
Confidence 44588999999999999999998753 334555432 122111 11 12345678888888889
Q ss_pred cEEEEEeCCCCc
Q 039180 208 KILLILDNTWKS 219 (790)
Q Consensus 208 r~LlVlDdv~~~ 219 (790)
+++|.||++++.
T Consensus 765 PCVIFFDELDSl 776 (953)
T KOG0736|consen 765 PCVIFFDELDSL 776 (953)
T ss_pred CeEEEecccccc
Confidence 999999999875
No 388
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.21 E-value=0.036 Score=47.53 Aligned_cols=24 Identities=50% Similarity=0.811 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHhHHHHHHHHHhhh
Q 039180 131 IGVYGMGGIGKTTLVKEFARRAIE 154 (790)
Q Consensus 131 v~I~G~~G~GKTtLa~~~~~~~~~ 154 (790)
|-|+|.+|+|||++|..++.+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999998887643
No 389
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=94.19 E-value=0.16 Score=53.10 Aligned_cols=37 Identities=24% Similarity=0.223 Sum_probs=29.5
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhh-----ccCCCEEEE
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIE-----DELYDMVVF 163 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~-----~~~f~~~~w 163 (790)
..+++.++|++|+||||+|..+++.... .+.|..+-|
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 4688999999999999999999988754 224555566
No 390
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.17 E-value=0.11 Score=57.05 Aligned_cols=86 Identities=26% Similarity=0.327 Sum_probs=50.5
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchh--HHHHHHHHHHHHHHc
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEE--AEFRRASRMFERLKN 205 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 205 (790)
-.++.|.|.+|+|||||+.+++...... -..++|++..+.. ..+... ++.++...... .....+..+.+.+.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ees~--~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEESA--SQIKLR-AERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccccH--HHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 4589999999999999999998876422 2457888765543 333222 45555422110 000112344444444
Q ss_pred CCcEEEEEeCCCC
Q 039180 206 EKKILLILDNTWK 218 (790)
Q Consensus 206 ~kr~LlVlDdv~~ 218 (790)
.+.-++|+|.+..
T Consensus 155 ~~~~lVVIDSIq~ 167 (446)
T PRK11823 155 EKPDLVVIDSIQT 167 (446)
T ss_pred hCCCEEEEechhh
Confidence 4556788888743
No 391
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=94.16 E-value=0.065 Score=55.53 Aligned_cols=43 Identities=28% Similarity=0.393 Sum_probs=31.2
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCC
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPD 171 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 171 (790)
..++|+|.|-||+||||.+..++......+ + .+.-|+.....+
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~g-~-kVLliD~D~q~~ 45 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVEMG-Q-KILIVGCDPKAD 45 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHHCC-C-eEEEEecccccc
Confidence 457898999999999999998887765442 3 356666555443
No 392
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.16 E-value=0.036 Score=52.67 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHh
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
+|+|.|.+|+||||+|+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 393
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.10 E-value=0.043 Score=52.26 Aligned_cols=25 Identities=36% Similarity=0.413 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
.+++|+|+.|+||||+++.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988753
No 394
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.10 E-value=0.06 Score=51.71 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=28.5
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEE
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSE 165 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~ 165 (790)
..+|.+.|++|+|||.||.+.+-+.-..+.|+.++++.
T Consensus 19 ~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 19 NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp -SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 57899999999999999999887765567888887763
No 395
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.09 E-value=0.44 Score=49.11 Aligned_cols=27 Identities=41% Similarity=0.374 Sum_probs=23.4
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
..+-|.++|++|.|||.+|++++.+..
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akeag 152 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEAG 152 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHcC
Confidence 456688999999999999999998753
No 396
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.09 E-value=0.14 Score=49.27 Aligned_cols=92 Identities=18% Similarity=0.244 Sum_probs=57.0
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH-c
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLK-N 205 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~-~ 205 (790)
...-|.++|.-|+|||.|++++.+....+ .-.. |.|+ ..+...+..+.+.++ .
T Consensus 84 pANnVLLwGaRGtGKSSLVKA~~~e~~~~--glrL--VEV~----------------------k~dl~~Lp~l~~~Lr~~ 137 (287)
T COG2607 84 PANNVLLWGARGTGKSSLVKALLNEYADE--GLRL--VEVD----------------------KEDLATLPDLVELLRAR 137 (287)
T ss_pred cccceEEecCCCCChHHHHHHHHHHHHhc--CCeE--EEEc----------------------HHHHhhHHHHHHHHhcC
Confidence 35678999999999999999999987654 2112 2222 223334455666665 3
Q ss_pred CCcEEEEEeCCCCc---cCccccCccCCC---CCCCcEEEEEeCC
Q 039180 206 EKKILLILDNTWKS---LDLGTIGIPFGV---EHRGCKLLFTTRD 244 (790)
Q Consensus 206 ~kr~LlVlDdv~~~---~~~~~l~~~~~~---~~~gs~iliTtR~ 244 (790)
.+||+|..||..-. .....++..+.. ..+...++..|.+
T Consensus 138 ~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 138 PEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred CceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 57899999998433 335555555533 2333445555544
No 397
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.06 E-value=0.066 Score=62.40 Aligned_cols=83 Identities=13% Similarity=0.177 Sum_probs=46.0
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcC
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNE 206 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 206 (790)
....+.++|+.|+|||++|+.++.... ...+.+++++..... .+.+-+|.+..... .+....+.+.+...
T Consensus 487 p~~~~Lf~GP~GvGKT~lAk~LA~~l~-----~~~i~id~se~~~~~----~~~~LiG~~~gyvg-~~~~g~L~~~v~~~ 556 (758)
T PRK11034 487 PVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERH----TVSRLIGAPPGYVG-FDQGGLLTDAVIKH 556 (758)
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHhC-----CCcEEeechhhcccc----cHHHHcCCCCCccc-ccccchHHHHHHhC
Confidence 356789999999999999999988762 123455554332211 12222232211000 01111233344444
Q ss_pred CcEEEEEeCCCCc
Q 039180 207 KKILLILDNTWKS 219 (790)
Q Consensus 207 kr~LlVlDdv~~~ 219 (790)
..-+|+||+++..
T Consensus 557 p~sVlllDEieka 569 (758)
T PRK11034 557 PHAVLLLDEIEKA 569 (758)
T ss_pred CCcEEEeccHhhh
Confidence 5579999999765
No 398
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.06 E-value=0.056 Score=51.37 Aligned_cols=24 Identities=33% Similarity=0.635 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
+|+|.|.+|+||||+|+.+.....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998875
No 399
>PF13245 AAA_19: Part of AAA domain
Probab=94.04 E-value=0.12 Score=41.00 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=17.8
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARR 151 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~ 151 (790)
-+++.|.|.+|.|||+++......
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 567888999999999555444443
No 400
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.03 E-value=0.077 Score=52.18 Aligned_cols=46 Identities=24% Similarity=0.273 Sum_probs=31.7
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCC
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPD 171 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 171 (790)
.+..+|+|.|++|+|||||.-++...+..+.+--.++=|+=|.+++
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~t 72 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFT 72 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCC
Confidence 3678999999999999999999998887654444455555455554
No 401
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=94.02 E-value=0.19 Score=59.25 Aligned_cols=180 Identities=21% Similarity=0.279 Sum_probs=91.2
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHh--hhc------------cCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhH
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRA--IED------------ELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEA 191 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~--~~~------------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 191 (790)
.+.+++.|+|+.+.||||+.+.+.-.. ..- ..|+ .++..++...++..-..... .
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~-~i~~~ig~~~si~~~lStfS----------~ 393 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFK-EIFADIGDEQSIEQSLSTFS----------G 393 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccc-eEEEecCCccchhhchhHHH----------H
Confidence 456789999999999999999886431 111 1122 12233333222221111111 1
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEeCCCCccC---ccccCcc-CCC-CCCCcEEEEEeCChhHHhhhCCCc---eEEccCCC
Q 039180 192 EFRRASRMFERLKNEKKILLILDNTWKSLD---LGTIGIP-FGV-EHRGCKLLFTTRDLDVLIRMGSEK---NFSIGILN 263 (790)
Q Consensus 192 ~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~---~~~l~~~-~~~-~~~gs~iliTtR~~~v~~~~~~~~---~~~l~~L~ 263 (790)
.......+...+ ..+-|+++|++....+ ...+... +.. ...|+.+|+||...++........ ...+.. +
T Consensus 394 ~m~~~~~Il~~~--~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~-d 470 (782)
T PRK00409 394 HMTNIVRILEKA--DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVENASVEF-D 470 (782)
T ss_pred HHHHHHHHHHhC--CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeEEEEEEE-e
Confidence 112233344444 3567999999865432 1122111 100 234788999999987766533222 122211 1
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHHHHHHHHHHhcCChhHHHHHHHHhc
Q 039180 264 EQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIALTIVVKALRNKELPEWKNALQELQ 325 (790)
Q Consensus 264 ~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~~~l~~l~ 325 (790)
. +......+...+.. -...|-.|++.+ |+|-.+.--|.-+-+......++++..+.
T Consensus 471 ~-~~l~~~Ykl~~G~~----g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~ 526 (782)
T PRK00409 471 E-ETLRPTYRLLIGIP----GKSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLE 526 (782)
T ss_pred c-CcCcEEEEEeeCCC----CCcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 1 11110011111111 134577777766 78888888888776554456666666644
No 402
>PRK06217 hypothetical protein; Validated
Probab=94.02 E-value=0.042 Score=52.52 Aligned_cols=34 Identities=29% Similarity=0.256 Sum_probs=26.2
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhhhccCC--CEEEEE
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAIEDELY--DMVVFS 164 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~~~~~f--~~~~wv 164 (790)
.|.|.|.+|+||||+|+++....... ++ |..+|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~-~~~~D~~~~~ 38 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIP-HLDTDDYFWL 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc-EEEcCceeec
Confidence 58999999999999999999886432 23 445664
No 403
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.02 E-value=0.037 Score=53.72 Aligned_cols=23 Identities=43% Similarity=0.670 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHh
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
+|+|.|..|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998875
No 404
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.01 E-value=0.42 Score=53.33 Aligned_cols=130 Identities=18% Similarity=0.232 Sum_probs=69.6
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhc------cCCCEEEEEEeCCC--C---CH------------HHHHHHHHHHhCC
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIED------ELYDMVVFSEVTQS--P---DI------------KQIQQEIAEKLGL 185 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~------~~f~~~~wv~~~~~--~---~~------------~~~~~~i~~~l~~ 185 (790)
..|+|+|+.|+|||||.+.+....... ..--.+.++.-... . ++ ..-.+..+..++.
T Consensus 349 ~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F 428 (530)
T COG0488 349 DRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGF 428 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCC
Confidence 458999999999999999996654322 01111223321110 0 01 2333344444444
Q ss_pred CCchh-------HHHHHHHHHHHHHHcCCcEEEEEeCCCCccCcc---ccCccCCCCCCCcEEEEEeCChhHHhhhCCCc
Q 039180 186 ELSEE-------AEFRRASRMFERLKNEKKILLILDNTWKSLDLG---TIGIPFGVEHRGCKLLFTTRDLDVLIRMGSEK 255 (790)
Q Consensus 186 ~~~~~-------~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~---~l~~~~~~~~~gs~iliTtR~~~v~~~~~~~~ 255 (790)
+.... +.-++....+..+.-.+.-+||||...+.-+.+ .+...+.. -+|+ ||+.|.++........ .
T Consensus 429 ~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~-f~Gt-vl~VSHDr~Fl~~va~-~ 505 (530)
T COG0488 429 TGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLD-FEGT-VLLVSHDRYFLDRVAT-R 505 (530)
T ss_pred ChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHh-CCCe-EEEEeCCHHHHHhhcc-e
Confidence 32221 122233334444443477899999988764433 33333322 2344 8889999877776553 4
Q ss_pred eEEccC
Q 039180 256 NFSIGI 261 (790)
Q Consensus 256 ~~~l~~ 261 (790)
.+.+++
T Consensus 506 i~~~~~ 511 (530)
T COG0488 506 IWLVED 511 (530)
T ss_pred EEEEcC
Confidence 555443
No 405
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.99 E-value=0.28 Score=46.36 Aligned_cols=116 Identities=19% Similarity=0.139 Sum_probs=66.4
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEe--CC-CCCHHHHHHHHH--H--HhCCC-----CchhHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEV--TQ-SPDIKQIQQEIA--E--KLGLE-----LSEEAEFRR 195 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~--~~-~~~~~~~~~~i~--~--~l~~~-----~~~~~~~~~ 195 (790)
...|-|+|..|-||||.|..++-+....+. .+..+.. +. .......++.+- . +.+.. .....+...
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~--~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGK--KVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCC--eEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 578999999999999999998887654432 2222222 12 234444444321 0 00111 011111222
Q ss_pred ----HHHHHHHHHcCCcEEEEEeCCCCc-----cCccccCccCCCCCCCcEEEEEeCCh
Q 039180 196 ----ASRMFERLKNEKKILLILDNTWKS-----LDLGTIGIPFGVEHRGCKLLFTTRDL 245 (790)
Q Consensus 196 ----~~~l~~~l~~~kr~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~iliTtR~~ 245 (790)
.....+.+.+++-=++|||++-.. -+.+++...+.....+..||+|-|+.
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 234445555667789999998544 23444445554456677899999984
No 406
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.96 E-value=0.0059 Score=57.93 Aligned_cols=90 Identities=16% Similarity=0.137 Sum_probs=74.5
Q ss_pred CChhhhccCCceEEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhhhccc
Q 039180 492 IPENFFKGVKKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELT 571 (790)
Q Consensus 492 lp~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~ 571 (790)
+|-.-+..++..++||++.|++..+-..|+-++.|..|+++.|.+..+ |..++.+..+.++++..|+.+..|.+.++++
T Consensus 33 ~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~-~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~ 111 (326)
T KOG0473|consen 33 IPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFL-PKDAKQQRETVNAASHKNNHSQQPKSQKKEP 111 (326)
T ss_pred cchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhC-hhhHHHHHHHHHHHhhccchhhCCccccccC
Confidence 443334577888899999988887777888888899999998888887 8888888889999998888888898888899
Q ss_pred ccceecCCccc
Q 039180 572 KLRLSDLTDCF 582 (790)
Q Consensus 572 ~L~~L~l~~~~ 582 (790)
.++.++..++.
T Consensus 112 ~~k~~e~k~~~ 122 (326)
T KOG0473|consen 112 HPKKNEQKKTE 122 (326)
T ss_pred CcchhhhccCc
Confidence 88888887763
No 407
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.95 E-value=0.052 Score=51.43 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
...|.++|++|+||||+|+.++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999886
No 408
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=93.95 E-value=0.2 Score=49.80 Aligned_cols=61 Identities=15% Similarity=0.169 Sum_probs=50.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HhhchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039180 9 NSGANFDNLKAELDRLKDERESIQRRVSEA-ERKSEKIEEMVEKWLVNANKRIEQAAKFIQDE 70 (790)
Q Consensus 9 ~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a-~~~~~~~~~~~~~w~~~~~~~~~~~ed~~d~~ 70 (790)
.+...+..++.+++-++++++.++.||++. +...++++. ...+..++-..||++|.++|..
T Consensus 311 rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~-~ed~a~~ii~kAyevEYVVDaC 372 (402)
T PF12061_consen 311 RYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDT-NEDCATQIIRKAYEVEYVVDAC 372 (402)
T ss_pred cccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhh-hhhHHHHHHHHHhheeeeeehh
Confidence 344556678999999999999999999987 443555555 9999999999999999999874
No 409
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.94 E-value=0.093 Score=50.87 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=25.1
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhh
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIE 154 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~ 154 (790)
....+|+|+|.+|+||||+|+.+......
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~ 50 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHE 50 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35679999999999999999999987643
No 410
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.94 E-value=0.049 Score=51.65 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998775
No 411
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.93 E-value=0.042 Score=50.62 Aligned_cols=23 Identities=48% Similarity=0.654 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHh
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
++.++|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998763
No 412
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.93 E-value=0.044 Score=50.15 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHh
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
+|.|.|..|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999875
No 413
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=93.92 E-value=0.054 Score=49.71 Aligned_cols=30 Identities=30% Similarity=0.582 Sum_probs=26.6
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDEL 157 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~ 157 (790)
.+|++|+|+.|+|||||+.++....+.+++
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~ 31 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGY 31 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCc
Confidence 479999999999999999999999877643
No 414
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.91 E-value=0.063 Score=48.53 Aligned_cols=47 Identities=28% Similarity=0.371 Sum_probs=32.4
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLE 186 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 186 (790)
.++++|+|.+|+||||+.+.+.... ++ +. ..+.-.+.-+++...+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l-~~--~~---------ivNyG~~Mle~A~k~glv 50 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL-VK--HK---------IVNYGDLMLEIAKKKGLV 50 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH-hh--ce---------eeeHhHHHHHHHHHhCCc
Confidence 6899999999999999998877665 21 11 123345666666666654
No 415
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.90 E-value=0.36 Score=52.41 Aligned_cols=90 Identities=24% Similarity=0.392 Sum_probs=56.4
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CchhHHH------
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSP-DIKQIQQEIAEKLGLE-------LSEEAEF------ 193 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~------ 193 (790)
=..++|.|.+|+|||||+..+......+. -+.++++-+.+.. .+.++.+++...-... ..+.+..
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 34589999999999999999887765432 2467777776543 4566666666542221 1111111
Q ss_pred HHHHHHHHHHH--cCCcEEEEEeCCCC
Q 039180 194 RRASRMFERLK--NEKKILLILDNTWK 218 (790)
Q Consensus 194 ~~~~~l~~~l~--~~kr~LlVlDdv~~ 218 (790)
.....+.+.++ +++++|+++|++..
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchHH
Confidence 12234555553 58999999999854
No 416
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.84 E-value=0.042 Score=47.85 Aligned_cols=23 Identities=43% Similarity=0.572 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHhHHHHHHHHHhh
Q 039180 131 IGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 131 v~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
|.+.|.+|+||||+|+.++....
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~ 24 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLG 24 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT
T ss_pred EeeECCCccHHHHHHHHHHHHcC
Confidence 67899999999999999998864
No 417
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.83 E-value=0.3 Score=54.46 Aligned_cols=85 Identities=19% Similarity=0.218 Sum_probs=50.5
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCch----------------h
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSE----------------E 190 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----------------~ 190 (790)
.=.++.|.|.+|+|||||+.+++.....+ -..+++++..+ +..++...+ +.++.+... .
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACAN--KERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccC
Confidence 34568899999999999999998876433 34567776554 344444443 445443211 0
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEeCC
Q 039180 191 AEFRRASRMFERLKNEKKILLILDNT 216 (790)
Q Consensus 191 ~~~~~~~~l~~~l~~~kr~LlVlDdv 216 (790)
...+.+..+.+.+.+.+.-.+|+|.+
T Consensus 337 ~~~~~~~~i~~~i~~~~~~~vvIDsi 362 (484)
T TIGR02655 337 GLEDHLQIIKSEIADFKPARIAIDSL 362 (484)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 11234455555554434456677766
No 418
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.81 E-value=0.2 Score=55.13 Aligned_cols=87 Identities=22% Similarity=0.248 Sum_probs=49.6
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchh--HHHHHHHHHHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEE--AEFRRASRMFERLK 204 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~ 204 (790)
.-.++.|.|.+|+|||||+.+++....... ..++|++..+. ..++.. -++.++...... ........+.+.+.
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g--~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~~~e~~~~~I~~~i~ 167 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQ--MKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYVLSETNWEQICANIE 167 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcC--CcEEEEECcCC--HHHHHH-HHHHcCCChHHeEEcCCCCHHHHHHHHH
Confidence 346889999999999999999987764331 35788876543 333222 233444321110 00011234444444
Q ss_pred cCCcEEEEEeCCCC
Q 039180 205 NEKKILLILDNTWK 218 (790)
Q Consensus 205 ~~kr~LlVlDdv~~ 218 (790)
+.+.-++|+|.+..
T Consensus 168 ~~~~~~vVIDSIq~ 181 (454)
T TIGR00416 168 EENPQACVIDSIQT 181 (454)
T ss_pred hcCCcEEEEecchh
Confidence 43455788888744
No 419
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.79 E-value=0.33 Score=52.38 Aligned_cols=91 Identities=21% Similarity=0.312 Sum_probs=54.5
Q ss_pred CCceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CchhHHH---
Q 039180 125 DIWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSP-DIKQIQQEIAEKLGLE-------LSEEAEF--- 193 (790)
Q Consensus 125 ~~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~--- 193 (790)
-..-..++|.|..|+|||||++.++.... .+.++..-+.+.. .+.++..+.+..-+.. ..+++..
T Consensus 155 i~~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~ 230 (442)
T PRK08927 155 CCRGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRR 230 (442)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHH
Confidence 34556789999999999999998887643 2455556665544 3445554444432221 0111111
Q ss_pred ---HHHHHHHHHHH-cCCcEEEEEeCCCCc
Q 039180 194 ---RRASRMFERLK-NEKKILLILDNTWKS 219 (790)
Q Consensus 194 ---~~~~~l~~~l~-~~kr~LlVlDdv~~~ 219 (790)
.....+.+.+. +|+++|+++||+...
T Consensus 231 ~a~~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 231 QAAYLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 12234445553 589999999998543
No 420
>PRK00698 tmk thymidylate kinase; Validated
Probab=93.77 E-value=0.46 Score=46.25 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=24.0
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhc
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIED 155 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~ 155 (790)
.+|+|.|+.|+||||+++.+.+.....
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~~~ 30 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLEQQ 30 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 689999999999999999999887543
No 421
>COG4240 Predicted kinase [General function prediction only]
Probab=93.76 E-value=0.25 Score=47.04 Aligned_cols=80 Identities=15% Similarity=0.129 Sum_probs=53.1
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCC-----CCchhHHHHHHHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGL-----ELSEEAEFRRASRMFE 201 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-----~~~~~~~~~~~~~l~~ 201 (790)
+.=+++|.|+-|+||||++..++.....+.. ..+...+..+-.-...-.-.++++... ..+..-+......+.+
T Consensus 49 rPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVLn 127 (300)
T COG4240 49 RPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVLN 127 (300)
T ss_pred CceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHHH
Confidence 4668999999999999999999999876643 467777776655544555556665421 1122233445566777
Q ss_pred HHHcCC
Q 039180 202 RLKNEK 207 (790)
Q Consensus 202 ~l~~~k 207 (790)
.+.+++
T Consensus 128 ai~~g~ 133 (300)
T COG4240 128 AIARGG 133 (300)
T ss_pred HHhcCC
Confidence 776654
No 422
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.76 E-value=0.051 Score=49.65 Aligned_cols=20 Identities=40% Similarity=0.684 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHhHHHHHHH
Q 039180 130 IIGVYGMGGIGKTTLVKEFA 149 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~ 149 (790)
.|+|.|.+|+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 68999999999999999988
No 423
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.76 E-value=0.041 Score=29.36 Aligned_cols=16 Identities=31% Similarity=0.644 Sum_probs=6.2
Q ss_pred cccEEeccCCCCcccc
Q 039180 549 NLKILSFVRSDIVQLP 564 (790)
Q Consensus 549 ~L~~L~L~~~~l~~lp 564 (790)
+|+.|++++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555554443
No 424
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.71 E-value=0.29 Score=52.63 Aligned_cols=88 Identities=20% Similarity=0.373 Sum_probs=53.0
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CchhHHH------
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSP-DIKQIQQEIAEKLGLE-------LSEEAEF------ 193 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~------ 193 (790)
=..++|.|..|+|||||++.++... ..+.++..-+++.. .+.++.+.++..-+.. ..+++..
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 3558999999999999999888542 23556666666544 3455666554442221 1111111
Q ss_pred HHHHHHHHHHH-cCCcEEEEEeCCCCc
Q 039180 194 RRASRMFERLK-NEKKILLILDNTWKS 219 (790)
Q Consensus 194 ~~~~~l~~~l~-~~kr~LlVlDdv~~~ 219 (790)
.....+.+.+. +|+++|+++||+...
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 11233444443 589999999998543
No 425
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.66 E-value=0.43 Score=48.92 Aligned_cols=53 Identities=19% Similarity=0.185 Sum_probs=36.9
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEK 182 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 182 (790)
.-.++.|.|.+|+||||++.+++...... +-..++|++... ...++...+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~-~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQ-HGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHh-cCceEEEEEccc--CHHHHHHHHHHH
Confidence 34588899999999999999998775433 124588888766 344555555443
No 426
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.65 E-value=0.34 Score=50.31 Aligned_cols=87 Identities=23% Similarity=0.415 Sum_probs=51.1
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeC-CCCCHHHHHHHHHHHhCCC-------CchhHHH------
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVT-QSPDIKQIQQEIAEKLGLE-------LSEEAEF------ 193 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~-------~~~~~~~------ 193 (790)
-..++|.|..|.|||||++.+..... -+..+..-+. ...+..++.......-+.. ..+++..
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 35689999999999999998886543 2333334443 3445666665555543221 1111111
Q ss_pred HHHHHHHHHHH-cCCcEEEEEeCCCC
Q 039180 194 RRASRMFERLK-NEKKILLILDNTWK 218 (790)
Q Consensus 194 ~~~~~l~~~l~-~~kr~LlVlDdv~~ 218 (790)
.....+.+.+. +++.+|+++||+..
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccchH
Confidence 12233444443 58999999999754
No 427
>PRK14529 adenylate kinase; Provisional
Probab=93.63 E-value=0.26 Score=48.34 Aligned_cols=81 Identities=17% Similarity=0.182 Sum_probs=43.7
Q ss_pred EEEEcCCCCcHhHHHHHHHHHhhhccCCCE--EEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCCc
Q 039180 131 IGVYGMGGIGKTTLVKEFARRAIEDELYDM--VVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEKK 208 (790)
Q Consensus 131 v~I~G~~G~GKTtLa~~~~~~~~~~~~f~~--~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 208 (790)
|.|.|++|+||||+|+.++...... +.+. ++.-.+..........++++.+-.. .++.-....+.+++.+...
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~-~is~gdllr~~i~~~t~lg~~i~~~i~~G~l----vpdei~~~lv~~~l~~~~~ 77 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLA-HIESGAIFREHIGGGTELGKKAKEYIDRGDL----VPDDITIPMILETLKQDGK 77 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC-CcccchhhhhhccCCChHHHHHHHHHhccCc----chHHHHHHHHHHHHhccCC
Confidence 7889999999999999999886432 2221 1111222222333334444433211 1222233445555543223
Q ss_pred EEEEEeCC
Q 039180 209 ILLILDNT 216 (790)
Q Consensus 209 ~LlVlDdv 216 (790)
.-+|||++
T Consensus 78 ~g~iLDGf 85 (223)
T PRK14529 78 NGWLLDGF 85 (223)
T ss_pred CcEEEeCC
Confidence 45888997
No 428
>PRK08149 ATP synthase SpaL; Validated
Probab=93.61 E-value=0.34 Score=52.24 Aligned_cols=89 Identities=17% Similarity=0.287 Sum_probs=52.9
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCC-------CchhHH------
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQ-SPDIKQIQQEIAEKLGLE-------LSEEAE------ 192 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~-------~~~~~~------ 192 (790)
.=..++|.|..|+|||||+..++.... -+.++...+.. ..++.++..+........ ..+++.
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 345689999999999999998886432 23444444443 345556666665543221 111111
Q ss_pred HHHHHHHHHHHH-cCCcEEEEEeCCCCc
Q 039180 193 FRRASRMFERLK-NEKKILLILDNTWKS 219 (790)
Q Consensus 193 ~~~~~~l~~~l~-~~kr~LlVlDdv~~~ 219 (790)
......+.+.+. +++++|+++||+...
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 112234444553 589999999998543
No 429
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=93.59 E-value=0.11 Score=53.40 Aligned_cols=41 Identities=32% Similarity=0.462 Sum_probs=30.3
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCC
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPD 171 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 171 (790)
+.|+|+|-||+||||++..++.....++ + .+.-|+.....+
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G-~-~VlliD~D~q~~ 41 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMG-K-KVMIVGCDPKAD 41 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCC-C-eEEEEeCCCCCC
Confidence 4689999999999999999998876543 3 355555554443
No 430
>PRK13236 nitrogenase reductase; Reviewed
Probab=93.56 E-value=0.093 Score=54.42 Aligned_cols=31 Identities=35% Similarity=0.461 Sum_probs=27.0
Q ss_pred CCceeEEEEEcCCCCcHhHHHHHHHHHhhhc
Q 039180 125 DIWLNIIGVYGMGGIGKTTLVKEFARRAIED 155 (790)
Q Consensus 125 ~~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~ 155 (790)
+++.++|++.|-||+||||+|..++.-....
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~~La~~ 33 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLAAMAEM 33 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHHHHHHC
Confidence 5678999999999999999999888877654
No 431
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.55 E-value=0.39 Score=50.11 Aligned_cols=40 Identities=25% Similarity=0.307 Sum_probs=30.2
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeC
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVT 167 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~ 167 (790)
....+++++|++|+||||++..++......+ ..+..+...
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g--~~V~Li~~D 151 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQG--KKVLLAAGD 151 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcC--CeEEEEecC
Confidence 3568999999999999999999998876432 234555543
No 432
>PRK09099 type III secretion system ATPase; Provisional
Probab=93.53 E-value=0.27 Score=53.30 Aligned_cols=91 Identities=21% Similarity=0.291 Sum_probs=53.5
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC-------CchhHHH-----
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLE-------LSEEAEF----- 193 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~~----- 193 (790)
..=..++|.|..|+|||||++.++...... ..+++..-.....+.++.+.+...-+.. ..+++..
T Consensus 161 ~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a 237 (441)
T PRK09099 161 GEGQRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKA 237 (441)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHH
Confidence 345678999999999999999888654321 2344444344455556555555442221 1111111
Q ss_pred -HHHHHHHHHHH-cCCcEEEEEeCCCCc
Q 039180 194 -RRASRMFERLK-NEKKILLILDNTWKS 219 (790)
Q Consensus 194 -~~~~~l~~~l~-~~kr~LlVlDdv~~~ 219 (790)
.....+.+.+. +|+++|+++||+...
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~DslTr~ 265 (441)
T PRK09099 238 AYVATAIAEYFRDRGLRVLLMMDSLTRF 265 (441)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 12234455554 579999999998543
No 433
>PRK13947 shikimate kinase; Provisional
Probab=93.51 E-value=0.062 Score=50.73 Aligned_cols=24 Identities=38% Similarity=0.358 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
-|.|+|++|+||||+|+.+++...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998863
No 434
>KOG2859 consensus DNA repair protein, member of the recA/RAD51 family [Replication, recombination and repair]
Probab=93.49 E-value=0.43 Score=45.08 Aligned_cols=59 Identities=17% Similarity=0.323 Sum_probs=47.2
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCC----EEEEEEeCCCCCHHHHHHHHHHHhCC
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYD----MVVFSEVTQSPDIKQIQQEIAEKLGL 185 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~----~~~wv~~~~~~~~~~~~~~i~~~l~~ 185 (790)
.=.+|-|.|++|.|||.+..++..+.-..+.|. .+.+++.+..+|+..+.+.+-..+..
T Consensus 37 aG~~vEi~Gp~~sgKt~vL~ql~a~CilPk~~GGl~~~VLfidld~~fd~lrL~~~l~hrL~q 99 (293)
T KOG2859|consen 37 AGTLVEISGPGNSGKTLVLQQLVAHCILPKKFGGLQWSVLFIDLDHKFDRLRLAKSLRHRLKQ 99 (293)
T ss_pred cCcEEEEeCCCCccHHHHHHHHHHHeecccccCCceeEEEEEeccccccHHHHHHHHHHHHHH
Confidence 457899999999999999998887755444554 47889999999999988887766644
No 435
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.46 E-value=0.21 Score=48.39 Aligned_cols=26 Identities=38% Similarity=0.486 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIE 154 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~ 154 (790)
.+|+|.|+.|+||||+++.+++....
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 36899999999999999999998753
No 436
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.45 E-value=0.073 Score=51.22 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
..+|.|.|.+|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999874
No 437
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.44 E-value=0.41 Score=48.48 Aligned_cols=89 Identities=20% Similarity=0.258 Sum_probs=50.9
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHc
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSP-DIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKN 205 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 205 (790)
...+++++|.+|+||||++..+......+ -..+.+++..... ....-++..++.++.+.....+...+....+.+.+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~--~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGK--KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh
Confidence 45799999999999999999988776432 2345666665332 22222333444444433222222233344444542
Q ss_pred -CCcEEEEEeCCC
Q 039180 206 -EKKILLILDNTW 217 (790)
Q Consensus 206 -~kr~LlVlDdv~ 217 (790)
.+.=++++|..-
T Consensus 152 ~~~~D~ViIDt~G 164 (270)
T PRK06731 152 EARVDYILIDTAG 164 (270)
T ss_pred cCCCCEEEEECCC
Confidence 234678888873
No 438
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.42 E-value=0.098 Score=50.00 Aligned_cols=37 Identities=27% Similarity=0.306 Sum_probs=28.9
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEe
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEV 166 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~ 166 (790)
.++|.|+|+.|+|||||+..+...... .|..+++.+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~--~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPD--KFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTT--TEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccc--ccccceeecc
Confidence 478999999999999999999988643 3655555443
No 439
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.41 E-value=0.18 Score=47.24 Aligned_cols=48 Identities=21% Similarity=0.225 Sum_probs=31.5
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKL 183 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 183 (790)
++.|.|.+|+||||+|..+...... .++++...... ..++.+.|....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~-----~~~~iat~~~~-~~e~~~ri~~h~ 50 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL-----QVLYIATAQPF-DDEMAARIAHHR 50 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC-----CcEeCcCCCCC-hHHHHHHHHHHH
Confidence 6899999999999999999876421 13444443333 334556665543
No 440
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.41 E-value=0.12 Score=52.68 Aligned_cols=54 Identities=17% Similarity=0.295 Sum_probs=40.6
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGL 185 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 185 (790)
.-+++.|+|.+|+|||++|.++....... ...++||+..+. ..++.+...+ ++-
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~--~~~l~~~~~~-~g~ 75 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEES--PEELLENARS-FGW 75 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEEecCC--HHHHHHHHHH-cCC
Confidence 56899999999999999999999887544 778999987763 4444444433 443
No 441
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.39 E-value=0.058 Score=51.43 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
++|+|+|+.|+||||+|+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999998753
No 442
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.39 E-value=0.073 Score=49.79 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHhHHHHHHHHHhh
Q 039180 131 IGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 131 v~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
|.|+|..|+||||+++.+.+..+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhh
Confidence 68999999999999999998874
No 443
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.39 E-value=0.038 Score=53.60 Aligned_cols=117 Identities=18% Similarity=0.173 Sum_probs=58.9
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCch-------hHHHHHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSE-------EAEFRRASRM 199 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~~~l 199 (790)
.-+++.|.|+.|.||||+.+.++....-. ..-.++.+.. .. -.+...|...++..... ..+...+..+
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~~la---~~G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~i 102 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLAIMA---QIGCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYI 102 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHH---HcCCCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHH
Confidence 34889999999999999999876442110 0001111111 00 12222333333222110 0111122233
Q ss_pred HHHHHcCCcEEEEEeCCCCc---cCc----cccCccCCCCCCCcEEEEEeCChhHHhhhC
Q 039180 200 FERLKNEKKILLILDNTWKS---LDL----GTIGIPFGVEHRGCKLLFTTRDLDVLIRMG 252 (790)
Q Consensus 200 ~~~l~~~kr~LlVlDdv~~~---~~~----~~l~~~~~~~~~gs~iliTtR~~~v~~~~~ 252 (790)
.... .++-|+++|+.... .+. ..+...+ ...|+.+|++|-..+++....
T Consensus 103 l~~~--~~~~lvllDE~~~gt~~~~~~~l~~~il~~l--~~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 103 LDYA--DGDSLVLIDELGRGTSSADGFAISLAILECL--IKKESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHhc--CCCcEEEeccccCCCCHHHHHHHHHHHHHHH--HhcCCEEEEECChHHHHHHhh
Confidence 3322 35689999998432 221 1111222 123788999999988887654
No 444
>PRK06851 hypothetical protein; Provisional
Probab=93.37 E-value=0.7 Score=48.83 Aligned_cols=44 Identities=27% Similarity=0.271 Sum_probs=33.1
Q ss_pred CCceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCC
Q 039180 125 DIWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQS 169 (790)
Q Consensus 125 ~~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 169 (790)
.+--+++.|.|.+|+||||++++++.....+ .++..++-|.+.+
T Consensus 211 ~~~~~~~~i~G~pG~GKstl~~~i~~~a~~~-G~~v~~~hC~~dP 254 (367)
T PRK06851 211 EGVKNRYFLKGRPGTGKSTMLKKIAKAAEER-GFDVEVYHCGFDP 254 (367)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHHHHhC-CCeEEEEeCCCCC
Confidence 4456889999999999999999999987654 3555555444443
No 445
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.32 E-value=0.044 Score=55.77 Aligned_cols=79 Identities=24% Similarity=0.362 Sum_probs=42.2
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCCc
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEKK 208 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 208 (790)
+-|.++|+.|+|||++++.......... | .+.-++.+...+...+++.+-..+....... . .-..+|+
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~-~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~---------~-gP~~~k~ 101 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDK-Y-LVITINFSAQTTSNQLQKIIESKLEKRRGRV---------Y-GPPGGKK 101 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCC-E-EEEEEES-TTHHHHHHHHCCCTTECECTTEE---------E-EEESSSE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccc-c-ceeEeeccCCCCHHHHHHHHhhcEEcCCCCC---------C-CCCCCcE
Confidence 4468999999999999999886543321 1 2345555554444433322222221110000 0 0013688
Q ss_pred EEEEEeCCCCc
Q 039180 209 ILLILDNTWKS 219 (790)
Q Consensus 209 ~LlVlDdv~~~ 219 (790)
.++.+||+--+
T Consensus 102 lv~fiDDlN~p 112 (272)
T PF12775_consen 102 LVLFIDDLNMP 112 (272)
T ss_dssp EEEEEETTT-S
T ss_pred EEEEecccCCC
Confidence 99999998543
No 446
>PRK05922 type III secretion system ATPase; Validated
Probab=93.30 E-value=0.47 Score=51.21 Aligned_cols=88 Identities=20% Similarity=0.331 Sum_probs=50.1
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCCC-------chhHH------H
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQ-SPDIKQIQQEIAEKLGLEL-------SEEAE------F 193 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~-------~~~~~------~ 193 (790)
-..++|.|..|+|||||++.+..... .+.....-+++ .....+.+.+......... .+++. .
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 34489999999999999998886532 23333333433 2334444444443332211 11111 1
Q ss_pred HHHHHHHHHHH-cCCcEEEEEeCCCCc
Q 039180 194 RRASRMFERLK-NEKKILLILDNTWKS 219 (790)
Q Consensus 194 ~~~~~l~~~l~-~~kr~LlVlDdv~~~ 219 (790)
.....+.+.+. +|+++|+++||+...
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 12234555554 589999999998543
No 447
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=93.29 E-value=0.37 Score=52.49 Aligned_cols=90 Identities=20% Similarity=0.258 Sum_probs=56.0
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCC--CEEEEEEeCCC-CCHHHHHHHHHHHhCCCC-------chhHH------
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELY--DMVVFSEVTQS-PDIKQIQQEIAEKLGLEL-------SEEAE------ 192 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~------ 192 (790)
.-++|.|-.|+|||||+..+.+....+..+ ..++++-+.+. ..+.++.+.+...-.... .+++.
T Consensus 142 QR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a 221 (458)
T TIGR01041 142 QKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVT 221 (458)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHH
Confidence 457889999999999999988876433111 14666777654 445666666654422211 11111
Q ss_pred HHHHHHHHHHHH--cCCcEEEEEeCCCC
Q 039180 193 FRRASRMFERLK--NEKKILLILDNTWK 218 (790)
Q Consensus 193 ~~~~~~l~~~l~--~~kr~LlVlDdv~~ 218 (790)
......+.+.++ +++++|+++||+..
T Consensus 222 ~~~a~tiAEyfr~d~G~~VLli~DslTR 249 (458)
T TIGR01041 222 PRMALTAAEYLAFEKDMHVLVILTDMTN 249 (458)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcChhH
Confidence 112345666666 58999999999854
No 448
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=93.29 E-value=0.21 Score=50.88 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.-+|.|.|.+|+||||+|..++++.
T Consensus 92 p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 92 PIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999886
No 449
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.29 E-value=0.28 Score=52.83 Aligned_cols=89 Identities=21% Similarity=0.340 Sum_probs=50.8
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCC-------chh-HHH-----H
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLEL-------SEE-AEF-----R 194 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-------~~~-~~~-----~ 194 (790)
-..++|.|..|+|||||++.+...... ...++...-.....+.++.+..+..-+... .++ ... .
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~~---~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~ 216 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTDA---DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY 216 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCCC---CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence 357899999999999999888765432 222333333334445555555444322211 111 111 1
Q ss_pred HHHHHHHHHH-cCCcEEEEEeCCCCc
Q 039180 195 RASRMFERLK-NEKKILLILDNTWKS 219 (790)
Q Consensus 195 ~~~~l~~~l~-~~kr~LlVlDdv~~~ 219 (790)
....+.+.+. +++++|+++||+...
T Consensus 217 ~a~~iAEyfrd~G~~Vll~~DslTr~ 242 (418)
T TIGR03498 217 TATAIAEYFRDQGKDVLLLMDSVTRF 242 (418)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhHH
Confidence 2234455554 478999999998543
No 450
>PRK14530 adenylate kinase; Provisional
Probab=93.27 E-value=0.074 Score=52.35 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
+.|.|+|++|+||||+|+.++...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999998875
No 451
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=93.27 E-value=0.1 Score=51.28 Aligned_cols=27 Identities=37% Similarity=0.625 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhc
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIED 155 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~ 155 (790)
++|+|.|-||+||||++..++......
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~~ 27 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAEM 27 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHHC
Confidence 478999999999999999988887654
No 452
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.24 E-value=0.24 Score=48.17 Aligned_cols=75 Identities=21% Similarity=0.204 Sum_probs=46.9
Q ss_pred CCceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH
Q 039180 125 DIWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLK 204 (790)
Q Consensus 125 ~~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 204 (790)
-+..+=|.++|++|.|||-.|++|+++-.. .|-.++ -.++.+..-. .....+.++++-.+
T Consensus 208 idppkgvllygppgtgktl~aravanrtda--cfirvi-------------gselvqkyvg-----egarmvrelf~mar 267 (435)
T KOG0729|consen 208 IDPPKGVLLYGPPGTGKTLCARAVANRTDA--CFIRVI-------------GSELVQKYVG-----EGARMVRELFEMAR 267 (435)
T ss_pred CCCCCceEEeCCCCCchhHHHHHHhcccCc--eEEeeh-------------hHHHHHHHhh-----hhHHHHHHHHHHhc
Confidence 355566889999999999999999987532 232221 1112211100 11234556666666
Q ss_pred cCCcEEEEEeCCCCc
Q 039180 205 NEKKILLILDNTWKS 219 (790)
Q Consensus 205 ~~kr~LlVlDdv~~~ 219 (790)
..|-++|.+|.++..
T Consensus 268 tkkaciiffdeidai 282 (435)
T KOG0729|consen 268 TKKACIIFFDEIDAI 282 (435)
T ss_pred ccceEEEEeeccccc
Confidence 678899999998643
No 453
>PRK13975 thymidylate kinase; Provisional
Probab=93.24 E-value=0.08 Score=51.29 Aligned_cols=25 Identities=36% Similarity=0.416 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
.+|+|.|+.|+||||+|+.+++...
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999999875
No 454
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=93.22 E-value=0.15 Score=57.91 Aligned_cols=55 Identities=16% Similarity=0.103 Sum_probs=37.5
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhcc-CCCEEEEEEeCCCCCHHHHHHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDE-LYDMVVFSEVTQSPDIKQIQQEIAE 181 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~ 181 (790)
.-++..|.|.+|+||||+++.+........ .-...+.+...+......+.+.+..
T Consensus 166 ~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 166 TRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHh
Confidence 357899999999999999998887653321 1124566666666555566555544
No 455
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.20 E-value=0.095 Score=48.33 Aligned_cols=33 Identities=21% Similarity=0.390 Sum_probs=25.9
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEE
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVF 163 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~w 163 (790)
|++|+|+.|+||||++.++....+.+ .+...+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~-G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR-GYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEE
Confidence 58899999999999999999987654 3443333
No 456
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.18 E-value=0.051 Score=50.85 Aligned_cols=92 Identities=14% Similarity=0.144 Sum_probs=69.6
Q ss_pred ccCeeeccceecceecccCCCccccccCCCccEEeeccCCcccccchhHHHhccccccEEeeccCchhhhHhhcCCCCCC
Q 039180 677 NLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFELLRELSIADCRGLREIISKDRADHV 756 (790)
Q Consensus 677 ~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 756 (790)
.++.++-+++.+... + -..+..++.++.|.+.+|..+.++......+-.|+|+.|+|++|+.+++-...-.
T Consensus 102 ~IeaVDAsds~I~~e---G--le~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L---- 172 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYE---G--LEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACL---- 172 (221)
T ss_pred eEEEEecCCchHHHH---H--HHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHH----
Confidence 456677777755432 1 1236788999999999999999986555555789999999999999988765322
Q ss_pred CCcccCCccceeeccccccccccC
Q 039180 757 TPCFVFPQMTTLRLEILPELKCYT 780 (790)
Q Consensus 757 ~~~~~~p~L~~L~l~~c~~L~~l~ 780 (790)
..|++|+.|.|.++|......
T Consensus 173 ---~~lknLr~L~l~~l~~v~~~e 193 (221)
T KOG3864|consen 173 ---LKLKNLRRLHLYDLPYVANLE 193 (221)
T ss_pred ---HHhhhhHHHHhcCchhhhchH
Confidence 359999999999988776653
No 457
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.16 E-value=0.078 Score=48.98 Aligned_cols=22 Identities=41% Similarity=0.508 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHhHHHHHHHHHh
Q 039180 131 IGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 131 v~I~G~~G~GKTtLa~~~~~~~ 152 (790)
|.++|++|+||||+|+.++...
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6899999999999999998876
No 458
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=93.15 E-value=0.13 Score=47.58 Aligned_cols=27 Identities=33% Similarity=0.550 Sum_probs=24.3
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhc
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIED 155 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~ 155 (790)
++++|+|..|+|||||+..+.......
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~ 28 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSAR 28 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 689999999999999999999887654
No 459
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=93.13 E-value=3.2 Score=43.21 Aligned_cols=47 Identities=17% Similarity=0.159 Sum_probs=33.4
Q ss_pred eEEccCCCHHHHHHHHHHHhCCCC--CCcchHHHHHHHHHHhcCCcHHH
Q 039180 256 NFSIGILNEQEAWRLFKIIAGAYV--ENRELKSTATSVAKACRGLPIAL 302 (790)
Q Consensus 256 ~~~l~~L~~~~~~~Lf~~~~~~~~--~~~~~~~~~~~i~~~~~glPlai 302 (790)
++++++++.+|+..++.-+..... .....+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999987764222 11334556666777778998643
No 460
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.13 E-value=0.51 Score=52.03 Aligned_cols=90 Identities=16% Similarity=0.186 Sum_probs=49.5
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEE-EEEEeCCCC-CHHHHHHHHHHHh---CCCCchh---HHHHHHHHHH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMV-VFSEVTQSP-DIKQIQQEIAEKL---GLELSEE---AEFRRASRMF 200 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~l---~~~~~~~---~~~~~~~~l~ 200 (790)
.-..|+|.+|+|||||++.+++.... .+-++. +.+-|.+.. .+.++.+.+-..+ ..+.+.. ........+.
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i~~-n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~A 495 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAITT-NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERA 495 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHHhh-cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHHH
Confidence 34689999999999999999987643 233433 344454433 3333333321111 0011111 1112233455
Q ss_pred HHHH-cCCcEEEEEeCCCCc
Q 039180 201 ERLK-NEKKILLILDNTWKS 219 (790)
Q Consensus 201 ~~l~-~~kr~LlVlDdv~~~ 219 (790)
+.+. .++.+||++|++...
T Consensus 496 e~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 496 KRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHcCCCEEEEEeCchHH
Confidence 5554 589999999998543
No 461
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.13 E-value=0.081 Score=46.31 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHhHHHHHHHHHhh
Q 039180 131 IGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 131 v~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
|.|+|..|+|||||.+.+.....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999987643
No 462
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=93.08 E-value=0.2 Score=49.46 Aligned_cols=41 Identities=29% Similarity=0.408 Sum_probs=31.2
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCC
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPD 171 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 171 (790)
+.|+|+|-||+||||.+..+...+... -..+.-|-++...|
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsaala~~--G~kVl~iGCDPK~D 41 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSAALAEM--GKKVLQIGCDPKAD 41 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESSSST
T ss_pred CeEEEEcCCCcccChhhhHHHHHHHhc--cceeeEecccCCCc
Confidence 469999999999999999988877654 34677777765543
No 463
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=93.07 E-value=0.49 Score=51.09 Aligned_cols=90 Identities=22% Similarity=0.291 Sum_probs=56.9
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhh------c-----cCCCEEEEEEeCCCCCHHHHHHHHHHHhC-CCC-------ch
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIE------D-----ELYDMVVFSEVTQSPDIKQIQQEIAEKLG-LEL-------SE 189 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~------~-----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-~~~-------~~ 189 (790)
.-++|.|-+|+|||||+..+.+.... + ..-..+++.-+.+.....+...+.+..-+ ... .+
T Consensus 142 QRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd 221 (466)
T TIGR01040 142 QKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLAN 221 (466)
T ss_pred CeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCC
Confidence 45789999999999999998877541 1 00115677778877666666666665544 211 11
Q ss_pred hHHH------HHHHHHHHHHH--cCCcEEEEEeCCCC
Q 039180 190 EAEF------RRASRMFERLK--NEKKILLILDNTWK 218 (790)
Q Consensus 190 ~~~~------~~~~~l~~~l~--~~kr~LlVlDdv~~ 218 (790)
++.. .....+.+.+. +|+++|+++||+..
T Consensus 222 ~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 222 DPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 1111 12234566666 47999999999843
No 464
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=93.05 E-value=0.084 Score=52.55 Aligned_cols=34 Identities=26% Similarity=0.320 Sum_probs=23.4
Q ss_pred EEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCC
Q 039180 133 VYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQ 168 (790)
Q Consensus 133 I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 168 (790)
|+|++|+||||+++.+.+.....+ ..++-|+...
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~--~~~~~vNLDP 34 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNG--RDVYIVNLDP 34 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT---S-EEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcc--CCceEEEcch
Confidence 689999999999999999876542 3355555543
No 465
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.02 E-value=0.066 Score=50.09 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHhHHHHHHHHHh
Q 039180 131 IGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 131 v~I~G~~G~GKTtLa~~~~~~~ 152 (790)
|.++|+.|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999875
No 466
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.02 E-value=0.094 Score=51.26 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=24.7
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.++++|+++|..|+|||||..++....
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999998775
No 467
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.02 E-value=0.08 Score=51.72 Aligned_cols=25 Identities=40% Similarity=0.486 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
-.+|+|+|+.|+||||||+.++...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999864
No 468
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.00 E-value=0.07 Score=48.13 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHh
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
+|+|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999764
No 469
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=92.98 E-value=0.28 Score=47.40 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=24.0
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhc
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIED 155 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~ 155 (790)
.+|+|.|..|+||||+++.+++.....
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~ 30 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQEN 30 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 579999999999999999999887653
No 470
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=92.95 E-value=0.78 Score=44.35 Aligned_cols=131 Identities=18% Similarity=0.220 Sum_probs=72.9
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHc
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKN 205 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 205 (790)
.+.+=|.++|++|.|||-||++++.+- ...||.||.+. +.+..-.. ......+++--.+.
T Consensus 179 aQPKGvlLygppgtGktLlaraVahht-------~c~firvsgse--------lvqk~ige-----gsrmvrelfvmare 238 (404)
T KOG0728|consen 179 AQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGSE--------LVQKYIGE-----GSRMVRELFVMARE 238 (404)
T ss_pred CCCcceEEecCCCCchhHHHHHHHhhc-------ceEEEEechHH--------HHHHHhhh-----hHHHHHHHHHHHHh
Confidence 356678899999999999999998753 24556666432 11111110 01122333333334
Q ss_pred CCcEEEEEeCCCCccC----------------ccccCccCCC--CCCCcEEEEEeCChhHHhh--hC---CCceEEccCC
Q 039180 206 EKKILLILDNTWKSLD----------------LGTIGIPFGV--EHRGCKLLFTTRDLDVLIR--MG---SEKNFSIGIL 262 (790)
Q Consensus 206 ~kr~LlVlDdv~~~~~----------------~~~l~~~~~~--~~~gs~iliTtR~~~v~~~--~~---~~~~~~l~~L 262 (790)
.-+-+|.+|.+++... .-++...+.. ..+.-+||..|..-++.+. .. -+..++..+-
T Consensus 239 hapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p 318 (404)
T KOG0728|consen 239 HAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPP 318 (404)
T ss_pred cCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCC
Confidence 4567888888765410 0011111111 2345578877766555554 22 2356777777
Q ss_pred CHHHHHHHHHHHhC
Q 039180 263 NEQEAWRLFKIIAG 276 (790)
Q Consensus 263 ~~~~~~~Lf~~~~~ 276 (790)
+++.-.++++-+..
T Consensus 319 ~e~ar~~ilkihsr 332 (404)
T KOG0728|consen 319 NEEARLDILKIHSR 332 (404)
T ss_pred CHHHHHHHHHHhhh
Confidence 77777777766554
No 471
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.94 E-value=0.082 Score=51.22 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.+++|+|.+|.|||||++.++--.
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhccc
Confidence 578999999999999999988543
No 472
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=92.94 E-value=0.079 Score=51.56 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARR 151 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~ 151 (790)
.+++|+|..|.||||+.+.+...
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHH
Confidence 79999999999999999999843
No 473
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=92.94 E-value=0.26 Score=51.44 Aligned_cols=30 Identities=30% Similarity=0.470 Sum_probs=26.1
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhhc
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIED 155 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~ 155 (790)
.+..+|+|.|.+|+||||++..+....+..
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 357899999999999999999988887644
No 474
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.92 E-value=0.24 Score=49.20 Aligned_cols=48 Identities=21% Similarity=0.386 Sum_probs=31.7
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQE 178 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 178 (790)
-.++.|.|.+|+|||++|.++......+. =+.++|++..++. .++.+.
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~-ge~vlyvs~ee~~--~~l~~~ 66 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNF-GEKVLYVSFEEPP--EELIEN 66 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHH-T--EEEEESSS-H--HHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhc-CCcEEEEEecCCH--HHHHHH
Confidence 46899999999999999999776543220 2347788775543 444444
No 475
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.92 E-value=0.095 Score=49.44 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
...|.|+|+.|+||||+++.++...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 4569999999999999999999875
No 476
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=92.92 E-value=0.092 Score=44.48 Aligned_cols=22 Identities=36% Similarity=0.375 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCcHhHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFA 149 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~ 149 (790)
-..++|.|+.|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3679999999999999999976
No 477
>PRK06936 type III secretion system ATPase; Provisional
Probab=92.91 E-value=0.46 Score=51.25 Aligned_cols=89 Identities=21% Similarity=0.353 Sum_probs=53.9
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CchhHHH----
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSP-DIKQIQQEIAEKLGLE-------LSEEAEF---- 193 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~---- 193 (790)
..-..++|.|..|+|||||.+.++.... -+.++.+-+.+.. .+.++....+..-+.. ..+++..
T Consensus 160 ~~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (439)
T PRK06936 160 GEGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAK 235 (439)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHH
Confidence 3445689999999999999999987643 3567777776654 4444444433322111 0111111
Q ss_pred --HHHHHHHHHHH-cCCcEEEEEeCCCC
Q 039180 194 --RRASRMFERLK-NEKKILLILDNTWK 218 (790)
Q Consensus 194 --~~~~~l~~~l~-~~kr~LlVlDdv~~ 218 (790)
.....+.+.++ +|+++|+++||+..
T Consensus 236 a~~~a~tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 236 AGFVATSIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 11233445553 58999999999854
No 478
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=92.90 E-value=0.46 Score=47.77 Aligned_cols=87 Identities=18% Similarity=0.224 Sum_probs=50.3
Q ss_pred eEEEEEcCCCCcHhHHH-HHHHHHhhhccCCCEE-EEEEeCCC-CCHHHHHHHHHHHhCCC-------CchhHHHH----
Q 039180 129 NIIGVYGMGGIGKTTLV-KEFARRAIEDELYDMV-VFSEVTQS-PDIKQIQQEIAEKLGLE-------LSEEAEFR---- 194 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa-~~~~~~~~~~~~f~~~-~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~---- 194 (790)
.-++|.|..|+|||+|| ..+.+.. .-+.+ +++-+.+. ....++.+++...-... ..+++...
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a 145 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLA 145 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHH
Confidence 45789999999999996 4555432 23444 66666665 44556666665432211 11111111
Q ss_pred --HHHHHHHHHH-cCCcEEEEEeCCCCc
Q 039180 195 --RASRMFERLK-NEKKILLILDNTWKS 219 (790)
Q Consensus 195 --~~~~l~~~l~-~~kr~LlVlDdv~~~ 219 (790)
..-.+.+.+. +++.+|+++||+...
T Consensus 146 ~~~a~aiAE~fr~~G~~Vlvl~DslTr~ 173 (274)
T cd01132 146 PYTGCAMGEYFMDNGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcChHHH
Confidence 1233444444 479999999998544
No 479
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.90 E-value=0.55 Score=52.45 Aligned_cols=49 Identities=22% Similarity=0.215 Sum_probs=34.0
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQE 178 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 178 (790)
.-+++.|.|.+|+||||+|.++......+ .=...+||+..+ +..++.+.
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~-~ge~~lyvs~eE--~~~~l~~~ 68 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIH-FDEPGVFVTFEE--SPQDIIKN 68 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEEec--CHHHHHHH
Confidence 35789999999999999999987653222 114578888753 44444444
No 480
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=92.90 E-value=0.63 Score=50.39 Aligned_cols=91 Identities=23% Similarity=0.365 Sum_probs=57.4
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCC-------CchhHHH------
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQS-PDIKQIQQEIAEKLGLE-------LSEEAEF------ 193 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~------ 193 (790)
=.-++|.|.+|+|||||+..+......+ +-+.++++-+.+. ..+.++.+++...-... ..+++..
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~~~-~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~ 221 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVA 221 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHHhc-CCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 3458899999999999999988775433 2346777777654 44566666665432211 1111111
Q ss_pred HHHHHHHHHHHc--CCcEEEEEeCCCCc
Q 039180 194 RRASRMFERLKN--EKKILLILDNTWKS 219 (790)
Q Consensus 194 ~~~~~l~~~l~~--~kr~LlVlDdv~~~ 219 (790)
.....+.+.+++ ++++|+++||+...
T Consensus 222 ~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 222 LTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 123455566643 78999999998543
No 481
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=92.89 E-value=1.2 Score=45.49 Aligned_cols=118 Identities=10% Similarity=0.027 Sum_probs=63.8
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhh------------ccCCCEEEEEEeCCC--CCHHHHHHHHHHHhCCCCchhHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIE------------DELYDMVVFSEVTQS--PDIKQIQQEIAEKLGLELSEEAEF 193 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~------------~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~ 193 (790)
.+-..++|+.|+||+++|..++...-- ..|-|..+....... ..++++ +++.+.+...
T Consensus 19 ~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqi-R~l~~~~~~~------- 90 (290)
T PRK05917 19 PSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETP-RAIKKQIWIH------- 90 (290)
T ss_pred CeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHH-HHHHHHHhhC-------
Confidence 466789999999999999998876532 123342222221111 122221 2222222111
Q ss_pred HHHHHHHHHHHcCCcEEEEEeCCCCc--cCccccCccCCCCCCCcEEEEEeCC-hhHHhh-hCCCceEEccCC
Q 039180 194 RRASRMFERLKNEKKILLILDNTWKS--LDLGTIGIPFGVEHRGCKLLFTTRD-LDVLIR-MGSEKNFSIGIL 262 (790)
Q Consensus 194 ~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtR~-~~v~~~-~~~~~~~~l~~L 262 (790)
-..+++-++|+|+++.. +.+..+...+-....++.+|++|.+ ..+... .+..+.+.+.++
T Consensus 91 ---------p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 91 ---------PYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME 154 (290)
T ss_pred ---------ccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccch
Confidence 11356678899999765 3455554444444456665555555 555444 445567777654
No 482
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=92.88 E-value=0.18 Score=51.64 Aligned_cols=43 Identities=28% Similarity=0.445 Sum_probs=32.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIK 173 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 173 (790)
++|+|.|-||+||||++..++......+ ..+.-|+.....+..
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G--~kVlliD~Dpq~n~~ 44 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMG--KKVMIVGCDPKADST 44 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCC--CeEEEEEcCCCCCch
Confidence 5788889999999999999998876432 246667776655443
No 483
>PTZ00185 ATPase alpha subunit; Provisional
Probab=92.88 E-value=0.82 Score=49.86 Aligned_cols=91 Identities=15% Similarity=0.154 Sum_probs=52.9
Q ss_pred eEEEEEcCCCCcHhHHH-HHHHHHhhh-----ccCCCEEEEEEeCCCCCHHHHHHHHHHHhC-CCC-------chh-HHH
Q 039180 129 NIIGVYGMGGIGKTTLV-KEFARRAIE-----DELYDMVVFSEVTQSPDIKQIQQEIAEKLG-LEL-------SEE-AEF 193 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa-~~~~~~~~~-----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-~~~-------~~~-~~~ 193 (790)
..++|.|-.|+|||+|| ..+.+.... .+.-+.++++-+++......-..+.+++-+ +.. .++ ...
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~ 269 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGL 269 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHH
Confidence 45789999999999997 555665422 123456788888876654333444444433 211 111 111
Q ss_pred H-----HHHHHHHHHH-cCCcEEEEEeCCCCc
Q 039180 194 R-----RASRMFERLK-NEKKILLILDNTWKS 219 (790)
Q Consensus 194 ~-----~~~~l~~~l~-~~kr~LlVlDdv~~~ 219 (790)
+ ....+.+.+. +++.+|+|+||+..-
T Consensus 270 r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 270 QYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEcCchHH
Confidence 1 1223444443 479999999998543
No 484
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.87 E-value=0.08 Score=50.76 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.+++|+|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997654
No 485
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=92.86 E-value=0.31 Score=52.59 Aligned_cols=89 Identities=17% Similarity=0.241 Sum_probs=51.5
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCC-------CchhHHH----
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQS-PDIKQIQQEIAEKLGLE-------LSEEAEF---- 193 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~---- 193 (790)
..-..++|.|..|+|||||++.+..... .+..++..+.+. ..+.+...+....-... ..+.+..
T Consensus 153 ~~GqrigI~G~sG~GKSTLL~~I~~~~~----~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~ 228 (433)
T PRK07594 153 GEGQRVGIFSAPGVGKSTLLAMLCNAPD----ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVR 228 (433)
T ss_pred CCCCEEEEECCCCCCccHHHHHhcCCCC----CCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHH
Confidence 3445789999999999999998876542 444555555543 34445555443211110 0111111
Q ss_pred --HHHHHHHHHHH-cCCcEEEEEeCCCC
Q 039180 194 --RRASRMFERLK-NEKKILLILDNTWK 218 (790)
Q Consensus 194 --~~~~~l~~~l~-~~kr~LlVlDdv~~ 218 (790)
.....+.+.+. +|+++|+++||+..
T Consensus 229 a~~~a~tiAEyfrd~G~~VLl~~Dsltr 256 (433)
T PRK07594 229 ALFVATTIAEFFRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCHHH
Confidence 11234445554 58899999999854
No 486
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=92.84 E-value=0.44 Score=51.46 Aligned_cols=89 Identities=17% Similarity=0.286 Sum_probs=47.8
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCC-------Cchh------HH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQ-SPDIKQIQQEIAEKLGLE-------LSEE------AE 192 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~-------~~~~------~~ 192 (790)
.=..++|.|..|+|||||++.+..... .+..+...+.. .....++....+..-+.. ..+. ..
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~~~----~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~a 229 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRYTQ----ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKA 229 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhcccC----CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHHH
Confidence 446689999999999999998876542 23322232322 233444443433332221 0010 11
Q ss_pred HHHHHHHHHHHH-cCCcEEEEEeCCCCc
Q 039180 193 FRRASRMFERLK-NEKKILLILDNTWKS 219 (790)
Q Consensus 193 ~~~~~~l~~~l~-~~kr~LlVlDdv~~~ 219 (790)
...+..+.+.+. +++++|+++||+...
T Consensus 230 ~e~a~~iAEyfr~~g~~Vll~~Dsltr~ 257 (434)
T PRK07196 230 TELCHAIATYYRDKGHDVLLLVDSLTRY 257 (434)
T ss_pred HHHHHHHHHHhhhccCCEEEeecchhHH
Confidence 112223333332 478999999998543
No 487
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=92.81 E-value=0.27 Score=51.07 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=25.8
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhhc
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIED 155 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~ 155 (790)
....+|+|+|.+|+||||++..+.......
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 357899999999999999999998876544
No 488
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=92.76 E-value=0.47 Score=51.65 Aligned_cols=89 Identities=18% Similarity=0.262 Sum_probs=49.6
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCC-------CCchhHH------H
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGL-------ELSEEAE------F 193 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-------~~~~~~~------~ 193 (790)
.-..++|+|..|+|||||++.+...... -..++++.-....+..++....+..-+. ...+++. .
T Consensus 157 ~Gq~i~I~G~sG~GKStLl~~I~~~~~~---~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~~ 233 (438)
T PRK07721 157 KGQRVGIFAGSGVGKSTLMGMIARNTSA---DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKGA 233 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcccCC---CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHHH
Confidence 4467899999999999999988865432 2234444333444455443332211100 0111111 1
Q ss_pred HHHHHHHHHHH-cCCcEEEEEeCCCC
Q 039180 194 RRASRMFERLK-NEKKILLILDNTWK 218 (790)
Q Consensus 194 ~~~~~l~~~l~-~~kr~LlVlDdv~~ 218 (790)
.....+.+.+. +|+++|+++||+..
T Consensus 234 ~~a~~iAEyfr~~g~~Vll~~Dsltr 259 (438)
T PRK07721 234 YTATAIAEYFRDQGLNVMLMMDSVTR 259 (438)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeChHH
Confidence 12234445553 58999999999853
No 489
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=92.75 E-value=0.11 Score=43.38 Aligned_cols=25 Identities=44% Similarity=0.648 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhhh
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAIE 154 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~~ 154 (790)
++.+.|.+|+||||++..++.....
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4788999999999999999988764
No 490
>PRK14527 adenylate kinase; Provisional
Probab=92.75 E-value=0.1 Score=50.23 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=23.8
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
...+|.|+|++|+||||+|+.+++...
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999987763
No 491
>PRK13946 shikimate kinase; Provisional
Probab=92.71 E-value=0.096 Score=50.08 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.+.|.++|+.|+||||+++.+++..
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999986
No 492
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=92.71 E-value=0.14 Score=52.11 Aligned_cols=28 Identities=29% Similarity=0.474 Sum_probs=25.4
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhcc
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDE 156 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~ 156 (790)
++|+|+|.+|+|||||+..+...++.++
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G 29 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG 29 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 6899999999999999999999987664
No 493
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=92.69 E-value=0.11 Score=46.08 Aligned_cols=27 Identities=30% Similarity=0.229 Sum_probs=23.7
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIE 154 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~ 154 (790)
-.+|.+.|.-|+||||+++.++.....
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 358999999999999999999988643
No 494
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=92.67 E-value=0.19 Score=51.71 Aligned_cols=39 Identities=31% Similarity=0.385 Sum_probs=28.7
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCC
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQS 169 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 169 (790)
++|+|+|-||+||||+|..++......++ .+.-|+....
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~--rVLliD~Dpq 40 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGK--KVLVVGCDPK 40 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCC--EEEEEeeCCc
Confidence 57899999999999999998888764432 3555554443
No 495
>PRK13976 thymidylate kinase; Provisional
Probab=92.62 E-value=0.8 Score=44.60 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhhhc
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAIED 155 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~~~ 155 (790)
.|+|-|..|+||||+++.+++.++..
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~~L~~~ 27 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEYLSDI 27 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 58999999999999999999998653
No 496
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=92.61 E-value=0.6 Score=41.72 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
.++.|.|.+|.||||+++.+.+.+.
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~ 37 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEELG 37 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHhC
Confidence 4899999999999999999998875
No 497
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=92.60 E-value=0.29 Score=48.84 Aligned_cols=80 Identities=15% Similarity=0.147 Sum_probs=48.5
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCch---hHHHHHHHHHHHH
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSE---EAEFRRASRMFER 202 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~l~~~ 202 (790)
.+.=+++.+|..|+||..+++.+++.....+--.. ..........-+... ....+....+.+.
T Consensus 108 ~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~--------------~V~~fvat~hFP~~~~ie~Yk~eL~~~v~~~ 173 (344)
T KOG2170|consen 108 RKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSP--------------FVHHFVATLHFPHASKIEDYKEELKNRVRGT 173 (344)
T ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHHhccccch--------------hHHHhhhhccCCChHHHHHHHHHHHHHHHHH
Confidence 56778999999999999999999988644321100 011111111111111 1223344555566
Q ss_pred HHcCCcEEEEEeCCCCc
Q 039180 203 LKNEKKILLILDNTWKS 219 (790)
Q Consensus 203 l~~~kr~LlVlDdv~~~ 219 (790)
...-+|-|+|+|+++..
T Consensus 174 v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 174 VQACQRSLFIFDEVDKL 190 (344)
T ss_pred HHhcCCceEEechhhhc
Confidence 65568899999999876
No 498
>PRK13695 putative NTPase; Provisional
Probab=92.59 E-value=0.17 Score=47.85 Aligned_cols=34 Identities=41% Similarity=0.510 Sum_probs=25.2
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEE
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFS 164 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv 164 (790)
.|+|+|.+|+||||+++.+++..... .+...-|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~-G~~~~g~~ 35 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEE-GYKVGGFY 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEE
Confidence 47899999999999999998876542 24433343
No 499
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=92.58 E-value=0.14 Score=50.31 Aligned_cols=22 Identities=27% Similarity=0.378 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHhHHHHHHHH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFAR 150 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~ 150 (790)
++++|+|+.|.||||+.+.+..
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 8999999999999999999864
No 500
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=92.56 E-value=0.11 Score=49.40 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
.+|+|-|++|+||+|+|+.++..+.
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg 29 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLG 29 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhC
Confidence 6899999999999999999998863
Done!