Query 039180
Match_columns 790
No_of_seqs 536 out of 4000
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 11:46:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039180.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039180hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.4E-43 8.1E-48 398.3 14.9 291 126-433 150-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 3.6E-35 1.2E-39 333.4 17.7 261 127-424 149-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 8E-33 2.8E-37 346.8 23.2 290 124-431 143-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 2.9E-30 9.9E-35 296.3 24.5 284 125-428 144-449 (591)
5 3v47_A TOLL-like receptor 5B a 99.9 2.2E-25 7.6E-30 247.6 17.2 320 436-775 16-407 (455)
6 2id5_A Lingo-1, leucine rich r 99.9 7.8E-25 2.7E-29 244.6 21.1 307 437-774 18-331 (477)
7 4fmz_A Internalin; leucine ric 99.9 7.1E-24 2.4E-28 226.4 23.2 293 451-774 43-344 (347)
8 4fmz_A Internalin; leucine ric 99.9 1.3E-23 4.6E-28 224.3 24.5 278 444-742 58-344 (347)
9 4ecn_A Leucine-rich repeat pro 99.9 3.8E-24 1.3E-28 250.7 20.1 274 450-740 446-785 (876)
10 3o6n_A APL1; leucine-rich repe 99.9 5.9E-24 2E-28 230.8 18.6 297 449-774 42-350 (390)
11 4eco_A Uncharacterized protein 99.9 4E-24 1.4E-28 246.4 18.3 274 450-740 204-545 (636)
12 2id5_A Lingo-1, leucine rich r 99.9 8.4E-24 2.9E-28 236.2 18.9 295 454-780 13-312 (477)
13 3oja_B Anopheles plasmodium-re 99.9 7.9E-24 2.7E-28 242.6 18.0 296 450-774 49-356 (597)
14 4ecn_A Leucine-rich repeat pro 99.9 9E-24 3.1E-28 247.5 17.6 306 450-780 489-843 (876)
15 1o6v_A Internalin A; bacterial 99.9 9.8E-23 3.3E-27 226.5 24.2 220 445-689 61-300 (466)
16 3vq2_A TLR4, TOLL-like recepto 99.9 3.8E-23 1.3E-27 238.4 21.1 168 435-607 16-192 (606)
17 2z63_A TOLL-like receptor 4, v 99.9 1.6E-23 5.4E-28 239.8 16.9 168 437-609 14-190 (570)
18 3bz5_A Internalin-J, INLJ; leu 99.9 2.5E-23 8.6E-28 229.3 17.2 207 451-690 41-247 (457)
19 2ft3_A Biglycan; proteoglycan, 99.9 4.3E-23 1.5E-27 218.7 17.2 270 475-774 34-305 (332)
20 1o6v_A Internalin A; bacterial 99.9 1E-22 3.5E-27 226.3 21.1 268 450-742 44-320 (466)
21 4fcg_A Uncharacterized protein 99.9 3.2E-23 1.1E-27 218.5 16.0 222 499-771 79-309 (328)
22 1xku_A Decorin; proteoglycan, 99.9 8.8E-23 3E-27 216.1 19.3 251 501-774 52-304 (330)
23 3v47_A TOLL-like receptor 5B a 99.9 3E-23 1E-27 230.4 16.3 305 455-781 13-388 (455)
24 3t6q_A CD180 antigen; protein- 99.9 4.9E-23 1.7E-27 237.5 18.4 294 438-741 20-386 (606)
25 1ogq_A PGIP-2, polygalacturona 99.9 2.2E-23 7.4E-28 218.5 13.5 252 501-781 50-309 (313)
26 4eco_A Uncharacterized protein 99.9 1.6E-23 5.5E-28 241.4 13.7 307 450-781 247-604 (636)
27 3rgz_A Protein brassinosteroid 99.9 3.6E-23 1.2E-27 244.2 16.3 255 500-781 293-556 (768)
28 3rgz_A Protein brassinosteroid 99.9 1.1E-22 3.8E-27 240.1 18.9 310 452-774 294-691 (768)
29 3j0a_A TOLL-like receptor 5; m 99.9 9E-23 3.1E-27 243.4 18.2 295 435-741 9-372 (844)
30 2z81_A CD282 antigen, TOLL-lik 99.9 5.7E-23 2E-27 234.0 15.7 189 441-645 16-210 (549)
31 3t6q_A CD180 antigen; protein- 99.9 9.2E-23 3.1E-27 235.2 17.2 151 454-609 14-166 (606)
32 2ft3_A Biglycan; proteoglycan, 99.9 9E-23 3.1E-27 216.2 15.4 285 452-774 33-331 (332)
33 1ogq_A PGIP-2, polygalacturona 99.9 1.4E-22 4.9E-27 212.3 15.0 249 452-745 50-305 (313)
34 3o6n_A APL1; leucine-rich repe 99.9 2E-22 6.7E-27 218.8 16.6 276 438-743 53-351 (390)
35 1ziw_A TOLL-like receptor 3; i 99.9 7.9E-22 2.7E-26 230.6 20.6 318 437-773 11-363 (680)
36 2z80_A TOLL-like receptor 2, v 99.9 2.9E-22 1E-26 214.2 15.2 268 457-742 36-312 (353)
37 2z7x_B TOLL-like receptor 1, v 99.9 1.2E-21 4.1E-26 221.3 21.0 82 654-742 303-385 (520)
38 3oja_B Anopheles plasmodium-re 99.9 2.9E-22 9.9E-27 229.6 15.3 276 438-743 59-357 (597)
39 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.7E-21 5.7E-26 222.1 21.4 124 451-581 51-179 (562)
40 1xku_A Decorin; proteoglycan, 99.9 2.9E-21 1E-25 204.4 21.2 287 452-773 31-329 (330)
41 3zyj_A Leucine-rich repeat-con 99.9 7.6E-22 2.6E-26 217.6 16.9 242 453-716 44-290 (440)
42 3zyi_A Leucine-rich repeat-con 99.9 6.8E-22 2.3E-26 218.8 16.2 242 453-716 55-301 (452)
43 2z7x_B TOLL-like receptor 1, v 99.9 9.8E-22 3.3E-26 222.1 16.9 136 438-581 8-148 (520)
44 3o53_A Protein LRIM1, AGAP0063 99.9 9.6E-23 3.3E-27 214.2 7.5 268 473-778 33-301 (317)
45 1ziw_A TOLL-like receptor 3; i 99.9 1.6E-21 5.6E-26 227.9 18.2 296 455-773 7-339 (680)
46 2z80_A TOLL-like receptor 2, v 99.9 1.2E-21 4.1E-26 209.4 15.6 270 480-776 36-314 (353)
47 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.1E-21 7.1E-26 221.3 18.4 121 454-581 33-156 (562)
48 2z63_A TOLL-like receptor 4, v 99.9 9.1E-22 3.1E-26 225.2 14.9 121 450-573 50-175 (570)
49 3vq2_A TLR4, TOLL-like recepto 99.9 1.3E-21 4.6E-26 225.4 16.0 293 453-774 12-387 (606)
50 2z66_A Variable lymphocyte rec 99.9 1.1E-21 3.8E-26 205.3 13.9 243 455-718 10-261 (306)
51 3zyj_A Leucine-rich repeat-con 99.9 1.6E-21 5.5E-26 215.0 15.8 238 482-742 50-290 (440)
52 3zyi_A Leucine-rich repeat-con 99.9 2.4E-21 8.4E-26 214.3 16.2 238 482-742 61-301 (452)
53 2z81_A CD282 antigen, TOLL-lik 99.9 1.5E-21 5E-26 222.3 14.6 156 449-608 47-208 (549)
54 3bz5_A Internalin-J, INLJ; leu 99.9 1.3E-20 4.3E-25 207.7 21.3 284 441-772 53-348 (457)
55 3j0a_A TOLL-like receptor 5; m 99.9 3.3E-21 1.1E-25 229.9 17.8 299 455-774 7-373 (844)
56 3g06_A SSPH2 (leucine-rich rep 99.9 9.4E-21 3.2E-25 214.8 20.5 235 452-742 61-295 (622)
57 2z66_A Variable lymphocyte rec 99.8 4.6E-21 1.6E-25 200.6 14.2 238 481-742 13-259 (306)
58 4fcg_A Uncharacterized protein 99.8 4E-21 1.4E-25 202.5 13.8 215 523-780 80-294 (328)
59 3o53_A Protein LRIM1, AGAP0063 99.8 2.6E-22 8.8E-27 211.0 4.6 251 491-780 24-279 (317)
60 4g8a_A TOLL-like receptor 4; l 99.8 4.3E-20 1.5E-24 214.2 21.7 155 437-596 38-197 (635)
61 1ozn_A Reticulon 4 receptor; N 99.8 1.2E-20 4.1E-25 195.2 15.0 203 501-720 32-240 (285)
62 1ozn_A Reticulon 4 receptor; N 99.8 3.7E-20 1.3E-24 191.5 17.5 221 503-743 13-237 (285)
63 3oja_A Leucine-rich immune mol 99.8 3.7E-21 1.3E-25 214.0 9.2 237 475-741 35-272 (487)
64 1jl5_A Outer protein YOPM; leu 99.8 2.8E-19 9.6E-24 196.8 21.7 181 452-667 111-291 (454)
65 3g06_A SSPH2 (leucine-rich rep 99.8 7.4E-19 2.5E-23 199.3 21.7 255 453-774 41-295 (622)
66 3oja_A Leucine-rich immune mol 99.8 1.8E-20 6.1E-25 208.5 7.1 234 499-771 32-270 (487)
67 1wwl_A Monocyte differentiatio 99.8 1.1E-20 3.7E-25 198.0 4.9 225 492-741 57-306 (312)
68 1jl5_A Outer protein YOPM; leu 99.8 4.3E-19 1.5E-23 195.3 17.7 202 451-690 90-291 (454)
69 2z62_A TOLL-like receptor 4, v 99.8 5.8E-19 2E-23 181.6 15.0 201 501-717 28-236 (276)
70 2o6q_A Variable lymphocyte rec 99.8 9.2E-19 3.1E-23 179.3 15.1 196 503-717 18-217 (270)
71 4g8a_A TOLL-like receptor 4; l 99.8 1.8E-18 6.1E-23 200.6 18.4 151 455-610 34-187 (635)
72 1p9a_G Platelet glycoprotein I 99.8 9.6E-19 3.3E-23 180.7 13.9 199 498-718 7-208 (290)
73 1wwl_A Monocyte differentiatio 99.8 1.9E-19 6.5E-24 188.6 7.7 244 452-716 43-307 (312)
74 1h6u_A Internalin H; cell adhe 99.8 1.5E-18 5.3E-23 181.0 14.3 190 498-715 38-227 (308)
75 2z62_A TOLL-like receptor 4, v 99.8 2.1E-18 7.1E-23 177.4 14.3 216 505-742 11-235 (276)
76 1h6u_A Internalin H; cell adhe 99.7 9.8E-18 3.3E-22 174.9 16.0 208 507-747 25-232 (308)
77 1z7x_W Ribonuclease inhibitor; 99.7 1.1E-19 3.8E-24 202.0 0.3 139 629-779 254-413 (461)
78 2xwt_C Thyrotropin receptor; s 99.7 4.2E-18 1.4E-22 171.0 11.7 84 525-608 32-117 (239)
79 2xwt_C Thyrotropin receptor; s 99.7 5.9E-18 2E-22 169.9 12.1 208 536-776 23-239 (239)
80 3rfs_A Internalin B, repeat mo 99.7 8.1E-18 2.8E-22 172.3 13.3 195 498-742 38-233 (272)
81 3rfs_A Internalin B, repeat mo 99.7 2.7E-18 9.1E-23 176.0 8.9 174 497-689 59-235 (272)
82 1p9a_G Platelet glycoprotein I 99.7 1.4E-17 4.8E-22 171.9 14.1 175 501-689 31-208 (290)
83 2o6q_A Variable lymphocyte rec 99.7 2.4E-17 8.3E-22 168.6 15.7 200 453-689 17-218 (270)
84 1z7x_W Ribonuclease inhibitor; 99.7 4.4E-19 1.5E-23 197.2 -0.7 313 451-779 2-356 (461)
85 2ca6_A RAN GTPase-activating p 99.7 2.5E-18 8.5E-23 186.1 4.6 234 498-742 29-314 (386)
86 4glp_A Monocyte differentiatio 99.7 4.3E-18 1.5E-22 178.1 5.2 200 499-716 89-305 (310)
87 3goz_A Leucine-rich repeat-con 99.7 2E-17 6.8E-22 177.1 10.4 241 492-742 13-295 (362)
88 4ay9_X Follicle-stimulating ho 99.7 3.9E-17 1.3E-21 173.9 11.6 231 483-740 17-255 (350)
89 2ca6_A RAN GTPase-activating p 99.7 6.7E-18 2.3E-22 182.7 5.4 255 501-774 9-314 (386)
90 2ast_B S-phase kinase-associat 99.7 1.6E-17 5.6E-22 176.1 7.5 214 494-741 61-282 (336)
91 3m19_A Variable lymphocyte rec 99.7 1.5E-16 5.1E-21 160.8 14.1 176 501-716 14-190 (251)
92 2ast_B S-phase kinase-associat 99.7 2.2E-17 7.5E-22 175.1 7.3 251 453-749 48-310 (336)
93 4glp_A Monocyte differentiatio 99.7 3.1E-17 1E-21 171.6 7.8 224 499-742 62-305 (310)
94 3m19_A Variable lymphocyte rec 99.7 4.6E-16 1.6E-20 157.2 14.7 176 453-644 15-192 (251)
95 1h6t_A Internalin B; cell adhe 99.7 2.5E-16 8.7E-21 162.6 12.8 171 498-689 43-213 (291)
96 3ogk_B Coronatine-insensitive 99.7 8.2E-17 2.8E-21 184.9 8.5 221 503-738 140-385 (592)
97 4ay9_X Follicle-stimulating ho 99.7 5.1E-16 1.7E-20 165.2 13.8 237 504-772 12-255 (350)
98 3cvr_A Invasion plasmid antige 99.6 3.2E-16 1.1E-20 175.5 11.9 180 502-721 60-246 (571)
99 3ogk_B Coronatine-insensitive 99.6 2.5E-16 8.4E-21 180.9 10.1 228 498-742 267-524 (592)
100 1h6t_A Internalin B; cell adhe 99.6 9.8E-16 3.4E-20 158.2 13.4 186 503-716 26-211 (291)
101 1m9s_A Internalin B; cell inva 99.6 6.4E-16 2.2E-20 175.0 12.5 170 499-689 41-210 (605)
102 1m9s_A Internalin B; cell inva 99.6 6.2E-16 2.1E-20 175.2 8.6 188 501-716 21-208 (605)
103 2p1m_B Transport inhibitor res 99.6 2.1E-16 7.3E-21 181.5 4.0 131 473-606 104-245 (594)
104 3goz_A Leucine-rich repeat-con 99.6 3.3E-16 1.1E-20 167.5 4.4 247 459-716 5-295 (362)
105 4ezg_A Putative uncharacterize 99.6 2.7E-15 9.1E-20 145.4 10.4 148 498-662 41-190 (197)
106 2p1m_B Transport inhibitor res 99.6 1.5E-15 5.1E-20 174.5 9.5 304 451-775 155-518 (594)
107 1xeu_A Internalin C; cellular 99.6 1.4E-15 4.9E-20 154.4 7.0 148 497-665 37-184 (263)
108 3cvr_A Invasion plasmid antige 99.6 7E-15 2.4E-19 164.6 12.3 178 453-690 60-244 (571)
109 3e6j_A Variable lymphocyte rec 99.6 1.6E-14 5.6E-19 143.3 13.7 152 453-609 20-172 (229)
110 4ezg_A Putative uncharacterize 99.6 6.7E-15 2.3E-19 142.6 10.1 153 519-716 39-192 (197)
111 2o6s_A Variable lymphocyte rec 99.6 8.7E-15 3E-19 143.2 10.9 107 501-608 28-136 (208)
112 2v70_A SLIT-2, SLIT homolog 2 99.6 1.1E-14 3.8E-19 143.5 11.5 149 455-608 14-165 (220)
113 1dce_A Protein (RAB geranylger 99.5 2.3E-16 7.9E-21 177.7 -2.0 204 498-738 346-567 (567)
114 2xot_A Amphoterin-induced prot 99.5 8.3E-15 2.8E-19 156.5 9.9 171 480-664 23-200 (361)
115 2o6s_A Variable lymphocyte rec 99.5 1.1E-14 3.6E-19 142.6 9.7 166 455-643 10-177 (208)
116 2v9t_B SLIT homolog 2 protein 99.5 2E-14 6.9E-19 141.7 11.3 106 502-608 33-140 (220)
117 1xeu_A Internalin C; cellular 99.5 1.8E-14 6.1E-19 146.3 11.1 166 453-644 20-185 (263)
118 2v9t_B SLIT homolog 2 protein 99.5 2.2E-14 7.6E-19 141.4 10.3 151 504-689 14-165 (220)
119 3e6j_A Variable lymphocyte rec 99.5 5.2E-14 1.8E-18 139.7 12.0 128 505-647 23-151 (229)
120 2xot_A Amphoterin-induced prot 99.5 2.8E-14 9.6E-19 152.4 9.2 173 455-643 21-201 (361)
121 2v70_A SLIT-2, SLIT homolog 2 99.5 9.3E-14 3.2E-18 136.9 11.8 147 480-643 16-165 (220)
122 4b8c_D Glucose-repressible alc 99.5 1.1E-14 3.8E-19 169.3 4.4 157 451-613 172-333 (727)
123 2ell_A Acidic leucine-rich nuc 99.5 8.4E-14 2.9E-18 131.0 9.1 140 499-649 22-165 (168)
124 1dce_A Protein (RAB geranylger 99.5 6.3E-15 2.2E-19 165.9 0.7 220 521-770 346-567 (567)
125 2qen_A Walker-type ATPase; unk 99.4 2E-11 6.8E-16 129.8 24.8 266 129-425 32-349 (350)
126 2wfh_A SLIT homolog 2 protein 99.4 5E-13 1.7E-17 128.6 10.7 122 482-609 17-139 (193)
127 2ell_A Acidic leucine-rich nuc 99.4 5.6E-13 1.9E-17 125.3 9.8 111 497-609 45-160 (168)
128 3qfl_A MLA10; coiled-coil, (CC 99.4 3.6E-13 1.2E-17 115.6 7.1 73 2-74 9-82 (115)
129 2je0_A Acidic leucine-rich nuc 99.4 3E-13 1E-17 124.4 5.7 105 501-608 17-125 (149)
130 1a9n_A U2A', U2A'; complex (nu 99.4 8.8E-13 3E-17 125.0 8.7 133 498-642 16-151 (176)
131 1w8a_A SLIT protein; signaling 99.4 1.1E-12 3.8E-17 126.1 9.3 107 502-609 30-139 (192)
132 2je0_A Acidic leucine-rich nuc 99.4 1.3E-12 4.4E-17 120.1 9.1 106 497-604 38-148 (149)
133 2fna_A Conserved hypothetical 99.4 3.4E-11 1.2E-15 128.3 21.4 263 129-424 31-356 (357)
134 1w8a_A SLIT protein; signaling 99.3 1.3E-12 4.5E-17 125.7 8.5 127 504-644 11-139 (192)
135 1a9n_A U2A', U2A'; complex (nu 99.3 1.1E-12 3.8E-17 124.3 7.0 110 498-609 39-153 (176)
136 2wfh_A SLIT homolog 2 protein 99.3 3.7E-12 1.3E-16 122.5 10.2 125 504-643 13-138 (193)
137 1w5s_A Origin recognition comp 99.3 4.6E-11 1.6E-15 130.1 20.3 277 128-420 50-387 (412)
138 2o6r_A Variable lymphocyte rec 99.3 1.2E-11 4E-16 117.3 10.6 108 501-609 28-137 (177)
139 4b8c_D Glucose-repressible alc 99.3 1.4E-12 4.9E-17 151.5 5.0 130 473-608 223-353 (727)
140 2o6r_A Variable lymphocyte rec 99.3 1.7E-11 5.7E-16 116.3 10.2 130 502-645 8-138 (177)
141 1ds9_A Outer arm dynein; leuci 99.2 1.6E-12 5.6E-17 125.8 1.5 141 491-637 39-180 (198)
142 2r9u_A Variable lymphocyte rec 99.2 2.1E-11 7.2E-16 114.9 8.6 103 504-609 15-118 (174)
143 3sb4_A Hypothetical leucine ri 99.2 1.7E-11 5.8E-16 129.0 8.7 101 500-605 48-157 (329)
144 3g39_A Variable lymphocyte rec 99.2 2.5E-11 8.4E-16 114.0 8.4 104 503-609 11-115 (170)
145 3sb4_A Hypothetical leucine ri 99.2 2.1E-11 7.3E-16 128.2 8.1 102 652-770 225-328 (329)
146 2qby_B CDC6 homolog 3, cell di 99.2 6E-10 2.1E-14 120.0 19.2 263 128-408 45-339 (384)
147 4fdw_A Leucine rich hypothetic 99.2 2.9E-10 9.8E-15 122.2 16.4 221 491-741 126-355 (401)
148 1ds9_A Outer arm dynein; leuci 99.2 1.1E-12 3.8E-17 127.0 -2.8 126 503-643 25-152 (198)
149 2v1u_A Cell division control p 99.1 7E-09 2.4E-13 111.7 21.8 265 127-408 43-351 (387)
150 2r9u_A Variable lymphocyte rec 99.1 2.1E-10 7.2E-15 108.0 7.5 102 480-587 17-120 (174)
151 4fdw_A Leucine rich hypothetic 99.0 1.7E-09 5.7E-14 116.2 14.0 254 453-740 114-379 (401)
152 3g39_A Variable lymphocyte rec 99.0 6.6E-10 2.2E-14 104.2 7.8 81 501-581 30-112 (170)
153 1fnn_A CDC6P, cell division co 99.0 7.9E-08 2.7E-12 103.4 25.2 263 128-408 44-351 (389)
154 2qby_A CDC6 homolog 1, cell di 99.0 6.4E-09 2.2E-13 111.9 16.3 265 127-408 44-348 (386)
155 1njg_A DNA polymerase III subu 98.9 9.8E-09 3.3E-13 102.7 12.3 173 129-309 46-231 (250)
156 2ifg_A High affinity nerve gro 98.9 3.8E-09 1.3E-13 111.9 9.0 92 486-581 20-113 (347)
157 2chg_A Replication factor C sm 98.8 2.9E-08 9.8E-13 97.7 13.3 162 130-307 40-205 (226)
158 3un9_A NLR family member X1; l 98.8 9.7E-10 3.3E-14 116.9 1.6 137 500-644 100-252 (372)
159 3un9_A NLR family member X1; l 98.8 5E-10 1.7E-14 119.1 -0.6 136 500-643 71-223 (372)
160 2ifg_A High affinity nerve gro 98.7 1.8E-08 6.3E-13 106.6 7.9 102 457-561 13-116 (347)
161 4fs7_A Uncharacterized protein 98.6 4.9E-07 1.7E-11 97.3 15.3 271 472-771 69-374 (394)
162 4fs7_A Uncharacterized protein 98.6 8E-07 2.7E-11 95.6 15.7 227 492-748 153-381 (394)
163 3e4g_A ATP synthase subunit S, 98.5 6.3E-08 2.2E-12 89.2 5.5 92 676-780 61-156 (176)
164 1sxj_B Activator 1 37 kDa subu 98.5 3.4E-07 1.1E-11 95.7 11.0 163 131-308 45-212 (323)
165 2ra8_A Uncharacterized protein 98.3 3.4E-07 1.2E-11 96.3 5.8 46 674-721 277-322 (362)
166 1hqc_A RUVB; extended AAA-ATPa 98.3 1.4E-06 4.7E-11 91.0 10.2 151 129-309 39-214 (324)
167 4gt6_A Cell surface protein; l 98.3 4.6E-06 1.6E-10 89.6 14.5 88 491-580 77-169 (394)
168 3te6_A Regulatory protein SIR3 98.3 1.5E-05 5.2E-10 81.3 16.9 149 127-276 44-212 (318)
169 1iqp_A RFCS; clamp loader, ext 98.3 1.2E-06 4E-11 91.7 8.5 161 130-308 48-214 (327)
170 3e4g_A ATP synthase subunit S, 98.2 5.6E-07 1.9E-11 82.9 4.1 93 492-586 53-154 (176)
171 2ra8_A Uncharacterized protein 98.2 1.4E-06 4.7E-11 91.7 6.8 138 495-642 166-318 (362)
172 4gt6_A Cell surface protein; l 98.2 1.2E-05 4.1E-10 86.4 14.2 112 652-781 264-385 (394)
173 1d2n_A N-ethylmaleimide-sensit 98.2 3.3E-05 1.1E-09 78.2 16.3 175 127-326 63-263 (272)
174 1io0_A Tropomodulin; LRR prote 98.2 1.2E-06 4.3E-11 82.9 4.9 112 496-608 31-163 (185)
175 2chq_A Replication factor C sm 98.1 1.3E-05 4.5E-10 83.2 12.3 159 130-306 40-204 (319)
176 1jr3_A DNA polymerase III subu 98.1 1.3E-05 4.5E-10 85.4 11.4 156 129-306 39-221 (373)
177 2qz4_A Paraplegin; AAA+, SPG7, 98.0 7.4E-05 2.5E-09 75.1 15.3 159 128-306 39-222 (262)
178 3rw6_A Nuclear RNA export fact 97.9 2.9E-06 9.9E-11 84.5 2.9 59 522-581 168-230 (267)
179 3bos_A Putative DNA replicatio 97.9 3.3E-06 1.1E-10 83.9 3.2 151 128-306 52-217 (242)
180 2z4s_A Chromosomal replication 97.9 2E-05 6.8E-10 85.4 9.4 160 128-305 130-305 (440)
181 4h09_A Hypothetical leucine ri 97.9 0.00018 6.2E-09 76.6 16.5 254 491-770 59-340 (379)
182 1a5t_A Delta prime, HOLB; zinc 97.9 0.00012 4E-09 76.4 14.1 153 128-304 24-203 (334)
183 3h4m_A Proteasome-activating n 97.9 8.2E-05 2.8E-09 75.8 12.4 156 128-305 51-230 (285)
184 3rw6_A Nuclear RNA export fact 97.8 1.7E-05 5.7E-10 78.9 6.5 78 498-577 167-257 (267)
185 1io0_A Tropomodulin; LRR prote 97.8 1.3E-05 4.4E-10 75.8 5.1 119 517-643 29-163 (185)
186 1jbk_A CLPB protein; beta barr 97.7 6.5E-05 2.2E-09 71.3 8.3 129 128-271 43-194 (195)
187 3pvs_A Replication-associated 97.7 0.00049 1.7E-08 74.3 16.1 155 128-307 50-216 (447)
188 1xwi_A SKD1 protein; VPS4B, AA 97.7 0.00049 1.7E-08 71.1 15.4 160 128-307 45-224 (322)
189 3d8b_A Fidgetin-like protein 1 97.7 0.00044 1.5E-08 72.7 14.6 160 127-307 116-296 (357)
190 3eie_A Vacuolar protein sortin 97.7 0.00038 1.3E-08 72.2 13.4 158 128-306 51-228 (322)
191 1l8q_A Chromosomal replication 97.6 0.00015 5E-09 75.5 10.1 152 128-300 37-202 (324)
192 1sxj_D Activator 1 41 kDa subu 97.6 0.00011 3.8E-09 77.5 8.5 168 131-305 61-234 (353)
193 3u61_B DNA polymerase accessor 97.6 0.00016 5.5E-09 75.2 9.2 152 128-302 48-212 (324)
194 1sxj_E Activator 1 40 kDa subu 97.6 0.00018 6.2E-09 75.8 9.8 99 207-306 134-237 (354)
195 3pfi_A Holliday junction ATP-d 97.6 0.00069 2.3E-08 70.8 14.1 151 128-307 55-228 (338)
196 3syl_A Protein CBBX; photosynt 97.6 0.00013 4.4E-09 75.3 8.3 132 127-276 66-218 (309)
197 4b4t_J 26S protease regulatory 97.6 0.003 1E-07 66.1 18.3 150 128-299 182-354 (405)
198 2qp9_X Vacuolar protein sortin 97.5 0.00095 3.2E-08 70.0 14.4 157 129-306 85-261 (355)
199 1sxj_C Activator 1 40 kDa subu 97.5 0.00034 1.1E-08 73.2 11.0 153 131-301 49-207 (340)
200 3uk6_A RUVB-like 2; hexameric 97.5 0.00083 2.8E-08 71.1 13.9 173 129-306 71-303 (368)
201 3vfd_A Spastin; ATPase, microt 97.5 0.001 3.5E-08 70.9 14.6 158 128-306 148-326 (389)
202 1sxj_A Activator 1 95 kDa subu 97.5 0.00014 4.7E-09 80.7 8.0 168 127-306 76-253 (516)
203 3b9p_A CG5977-PA, isoform A; A 97.5 0.0032 1.1E-07 64.2 17.3 158 128-306 54-233 (297)
204 3ec2_A DNA replication protein 97.4 5.8E-05 2E-09 71.0 3.5 100 128-244 38-142 (180)
205 2zan_A Vacuolar protein sortin 97.4 0.0025 8.5E-08 69.0 16.3 160 127-306 166-345 (444)
206 4b4t_L 26S protease subunit RP 97.4 0.0028 9.7E-08 67.4 15.4 150 128-299 215-387 (437)
207 4h09_A Hypothetical leucine ri 97.3 0.0022 7.5E-08 68.1 14.7 112 625-748 234-348 (379)
208 4b4t_H 26S protease regulatory 97.3 0.0043 1.5E-07 65.9 16.0 152 126-299 241-415 (467)
209 4b4t_I 26S protease regulatory 97.3 0.0042 1.4E-07 65.2 15.7 150 128-299 216-388 (437)
210 2w58_A DNAI, primosome compone 97.3 0.00025 8.7E-09 67.9 5.9 98 129-244 55-158 (202)
211 3cf0_A Transitional endoplasmi 97.2 0.0024 8.2E-08 65.3 12.3 152 128-301 49-223 (301)
212 4b4t_K 26S protease regulatory 97.2 0.0053 1.8E-07 65.2 14.9 150 128-299 206-379 (428)
213 4b4t_M 26S protease regulatory 97.2 0.001 3.6E-08 70.7 9.4 151 127-299 214-387 (434)
214 2ce7_A Cell division protein F 97.1 0.0033 1.1E-07 67.9 12.3 148 130-299 51-221 (476)
215 2gno_A DNA polymerase III, gam 97.0 0.0019 6.6E-08 65.8 9.4 129 128-275 18-152 (305)
216 3t15_A Ribulose bisphosphate c 97.0 0.0045 1.6E-07 62.9 12.0 27 127-153 35-61 (293)
217 1lv7_A FTSH; alpha/beta domain 96.8 0.017 5.9E-07 57.3 14.3 154 129-304 46-223 (257)
218 2p65_A Hypothetical protein PF 96.8 0.0026 8.9E-08 59.6 7.8 27 128-154 43-69 (187)
219 3n70_A Transport activator; si 96.7 0.00032 1.1E-08 63.0 0.8 23 130-152 26-48 (145)
220 1n0w_A DNA repair protein RAD5 96.7 0.011 3.8E-07 58.1 12.1 89 129-218 25-130 (243)
221 3hu3_A Transitional endoplasmi 96.6 0.0083 2.9E-07 65.4 11.3 156 128-305 238-414 (489)
222 4fcw_A Chaperone protein CLPB; 96.6 0.0023 8E-08 65.8 6.6 85 128-219 47-131 (311)
223 3io5_A Recombination and repai 96.6 0.011 3.7E-07 59.4 10.7 86 129-219 29-123 (333)
224 3m6a_A ATP-dependent protease 96.6 0.0042 1.4E-07 69.0 8.6 136 128-275 108-266 (543)
225 1ofh_A ATP-dependent HSL prote 96.6 0.011 3.7E-07 60.6 11.1 25 128-152 50-74 (310)
226 1qvr_A CLPB protein; coiled co 96.5 0.0063 2.1E-07 71.9 10.0 154 128-296 191-369 (854)
227 3pxg_A Negative regulator of g 96.4 0.0075 2.6E-07 65.7 9.4 128 127-276 200-339 (468)
228 2cvh_A DNA repair and recombin 96.4 0.014 4.7E-07 56.3 10.2 45 128-177 20-64 (220)
229 2x8a_A Nuclear valosin-contain 96.3 0.032 1.1E-06 55.8 12.8 126 131-276 47-192 (274)
230 1v5w_A DMC1, meiotic recombina 96.3 0.024 8.3E-07 58.8 12.1 90 127-217 121-229 (343)
231 1in4_A RUVB, holliday junction 96.3 0.031 1E-06 57.9 12.8 50 255-305 173-222 (334)
232 3lda_A DNA repair protein RAD5 96.3 0.021 7.2E-07 60.3 11.6 89 128-217 178-283 (400)
233 2z43_A DNA repair and recombin 96.3 0.024 8.2E-07 58.4 11.6 90 128-218 107-214 (324)
234 3hr8_A Protein RECA; alpha and 96.2 0.017 5.8E-07 59.8 10.3 84 129-219 62-151 (356)
235 2i1q_A DNA repair and recombin 96.2 0.028 9.4E-07 57.9 11.9 89 128-217 98-214 (322)
236 2vhj_A Ntpase P4, P4; non- hyd 96.2 0.0043 1.5E-07 62.6 5.3 68 129-218 124-193 (331)
237 2r62_A Cell division protease 96.1 0.0014 4.7E-08 65.9 1.1 126 131-276 47-197 (268)
238 3pxi_A Negative regulator of g 96.0 0.003 1E-07 73.7 3.7 127 128-275 521-675 (758)
239 1pgv_A TMD-1, tropomodulin TMD 96.0 0.0055 1.9E-07 57.4 4.6 111 497-607 37-168 (197)
240 2kjq_A DNAA-related protein; s 96.0 0.0052 1.8E-07 55.2 4.3 39 128-168 36-74 (149)
241 3cf2_A TER ATPase, transitiona 96.0 0.0087 3E-07 68.7 7.1 151 127-299 237-407 (806)
242 4a74_A DNA repair and recombin 96.0 0.057 2E-06 52.3 12.3 90 128-218 25-136 (231)
243 1ixz_A ATP-dependent metallopr 95.9 0.056 1.9E-06 53.4 12.2 147 131-299 52-221 (254)
244 1iy2_A ATP-dependent metallopr 95.8 0.056 1.9E-06 54.2 11.6 147 131-299 76-245 (278)
245 2bjv_A PSP operon transcriptio 95.8 0.0056 1.9E-07 61.2 4.0 38 129-168 30-67 (265)
246 3dm5_A SRP54, signal recogniti 95.7 0.34 1.1E-05 51.5 17.6 29 127-155 99-127 (443)
247 2w0m_A SSO2452; RECA, SSPF, un 95.7 0.034 1.2E-06 54.0 9.5 46 129-178 24-69 (235)
248 2zr9_A Protein RECA, recombina 95.7 0.031 1.1E-06 57.9 9.6 84 128-218 61-150 (349)
249 3co5_A Putative two-component 95.7 0.0012 4.1E-08 59.1 -1.1 23 130-152 29-51 (143)
250 2c9o_A RUVB-like 1; hexameric 95.6 0.037 1.3E-06 60.1 9.9 95 210-306 298-410 (456)
251 1xp8_A RECA protein, recombina 95.6 0.043 1.5E-06 57.2 9.9 85 128-219 74-164 (366)
252 3pxi_A Negative regulator of g 95.6 0.027 9.2E-07 65.6 9.3 127 128-276 201-339 (758)
253 1u94_A RECA protein, recombina 95.5 0.042 1.4E-06 57.1 9.6 83 128-217 63-151 (356)
254 1pzn_A RAD51, DNA repair and r 95.5 0.063 2.1E-06 55.8 11.0 92 127-219 130-243 (349)
255 3rfe_A Platelet glycoprotein I 95.5 0.015 5.1E-07 50.7 5.2 55 505-561 12-68 (130)
256 1r6b_X CLPA protein; AAA+, N-t 95.4 0.017 5.7E-07 67.4 7.0 83 127-219 487-569 (758)
257 1jr3_D DNA polymerase III, del 95.4 0.12 4.2E-06 53.5 12.8 155 128-304 18-183 (343)
258 2px0_A Flagellar biosynthesis 95.3 0.042 1.4E-06 55.6 8.5 86 127-215 104-190 (296)
259 2dhr_A FTSH; AAA+ protein, hex 95.3 0.037 1.3E-06 60.2 8.6 173 131-325 67-272 (499)
260 3kl4_A SRP54, signal recogniti 95.3 0.3 1E-05 51.8 15.3 39 127-167 96-134 (433)
261 2qgz_A Helicase loader, putati 95.3 0.017 5.9E-07 58.9 5.6 38 128-167 152-190 (308)
262 1j8m_F SRP54, signal recogniti 95.3 0.81 2.8E-05 46.0 17.9 87 128-216 98-189 (297)
263 1sky_E F1-ATPase, F1-ATP synth 95.1 0.061 2.1E-06 57.4 9.1 87 130-217 153-255 (473)
264 1g5t_A COB(I)alamin adenosyltr 95.0 0.029 1E-06 52.2 5.8 112 128-245 28-163 (196)
265 3kb2_A SPBC2 prophage-derived 95.0 0.014 4.8E-07 53.8 3.7 24 129-152 2-25 (173)
266 1qhx_A CPT, protein (chloramph 95.0 0.013 4.4E-07 54.4 3.4 24 129-152 4-27 (178)
267 1r6b_X CLPA protein; AAA+, N-t 94.9 0.077 2.6E-06 61.8 10.6 134 127-275 206-362 (758)
268 3ice_A Transcription terminati 94.9 0.029 9.9E-07 57.8 5.9 86 128-218 174-272 (422)
269 3rfe_A Platelet glycoprotein I 94.9 0.026 9E-07 49.1 5.0 54 552-608 12-67 (130)
270 2ehv_A Hypothetical protein PH 94.7 0.078 2.7E-06 52.1 8.5 38 128-167 30-68 (251)
271 3vaa_A Shikimate kinase, SK; s 94.6 0.02 6.8E-07 54.3 3.7 25 128-152 25-49 (199)
272 3fwy_A Light-independent proto 94.6 0.029 9.8E-07 57.3 5.0 41 126-168 46-86 (314)
273 3lw7_A Adenylate kinase relate 94.6 0.019 6.5E-07 53.0 3.4 20 129-148 2-21 (179)
274 4eun_A Thermoresistant glucoki 94.6 0.098 3.3E-06 49.5 8.5 25 128-152 29-53 (200)
275 3trf_A Shikimate kinase, SK; a 94.5 0.022 7.5E-07 53.2 3.7 25 128-152 5-29 (185)
276 1pgv_A TMD-1, tropomodulin TMD 94.5 0.038 1.3E-06 51.6 5.1 117 520-642 37-168 (197)
277 2xxa_A Signal recognition part 94.4 0.15 5.1E-06 54.5 10.3 42 126-168 98-139 (433)
278 1xjc_A MOBB protein homolog; s 94.4 0.04 1.4E-06 50.2 4.9 29 127-155 3-31 (169)
279 1ly1_A Polynucleotide kinase; 94.4 0.024 8E-07 52.7 3.6 22 129-150 3-24 (181)
280 3bh0_A DNAB-like replicative h 94.4 0.21 7.2E-06 51.0 11.0 51 128-182 68-118 (315)
281 1kgd_A CASK, peripheral plasma 94.4 0.023 7.8E-07 52.9 3.4 24 129-152 6-29 (180)
282 1qvr_A CLPB protein; coiled co 94.3 0.033 1.1E-06 65.7 5.5 39 128-168 588-626 (854)
283 1kag_A SKI, shikimate kinase I 94.3 0.02 6.9E-07 52.7 3.0 24 129-152 5-28 (173)
284 1nks_A Adenylate kinase; therm 94.3 0.026 8.9E-07 53.0 3.8 26 129-154 2-27 (194)
285 2dr3_A UPF0273 protein PH0284; 94.3 0.13 4.3E-06 50.4 9.0 46 129-178 24-69 (247)
286 1zp6_A Hypothetical protein AT 94.3 0.023 8E-07 53.3 3.4 24 128-151 9-32 (191)
287 1zuh_A Shikimate kinase; alpha 94.3 0.027 9.2E-07 51.7 3.7 28 126-153 5-32 (168)
288 3t61_A Gluconokinase; PSI-biol 94.2 0.022 7.4E-07 54.2 3.0 25 128-152 18-42 (202)
289 3uie_A Adenylyl-sulfate kinase 94.2 0.029 9.8E-07 53.2 3.9 27 127-153 24-50 (200)
290 1kht_A Adenylate kinase; phosp 94.1 0.029 9.8E-07 52.6 3.7 25 129-153 4-28 (192)
291 2ze6_A Isopentenyl transferase 94.1 0.03 1E-06 55.3 3.9 24 129-152 2-25 (253)
292 2ck3_D ATP synthase subunit be 94.1 0.28 9.6E-06 52.2 11.3 88 129-217 154-263 (482)
293 2rhm_A Putative kinase; P-loop 94.1 0.034 1.2E-06 52.2 4.1 25 128-152 5-29 (193)
294 1vma_A Cell division protein F 94.1 0.18 6.3E-06 50.9 9.7 40 126-167 102-141 (306)
295 3iij_A Coilin-interacting nucl 94.0 0.027 9.3E-07 52.3 3.1 25 128-152 11-35 (180)
296 1via_A Shikimate kinase; struc 93.9 0.028 9.6E-07 51.9 3.1 24 129-152 5-28 (175)
297 1knq_A Gluconate kinase; ALFA/ 93.9 0.036 1.2E-06 51.1 3.9 25 128-152 8-32 (175)
298 1fx0_B ATP synthase beta chain 93.9 0.18 6.3E-06 53.8 9.5 88 129-217 166-276 (498)
299 3hjn_A DTMP kinase, thymidylat 93.8 0.34 1.1E-05 45.5 10.3 51 130-182 2-52 (197)
300 2jaq_A Deoxyguanosine kinase; 93.8 0.037 1.3E-06 52.5 3.7 24 130-153 2-25 (205)
301 3tqc_A Pantothenate kinase; bi 93.7 0.11 3.9E-06 52.7 7.3 28 126-153 90-117 (321)
302 3c8u_A Fructokinase; YP_612366 93.7 0.038 1.3E-06 52.8 3.6 28 127-154 21-48 (208)
303 3tr0_A Guanylate kinase, GMP k 93.7 0.036 1.2E-06 52.7 3.4 24 129-152 8-31 (205)
304 1ukz_A Uridylate kinase; trans 93.7 0.043 1.5E-06 52.1 4.0 27 126-152 13-39 (203)
305 3tau_A Guanylate kinase, GMP k 93.7 0.036 1.2E-06 52.9 3.4 25 128-152 8-32 (208)
306 2qor_A Guanylate kinase; phosp 93.7 0.032 1.1E-06 53.1 3.0 25 128-152 12-36 (204)
307 2iyv_A Shikimate kinase, SK; t 93.7 0.031 1.1E-06 52.1 2.9 24 129-152 3-26 (184)
308 2c95_A Adenylate kinase 1; tra 93.6 0.042 1.4E-06 51.7 3.8 25 128-152 9-33 (196)
309 2bdt_A BH3686; alpha-beta prot 93.6 0.04 1.4E-06 51.6 3.6 22 129-150 3-24 (189)
310 1tev_A UMP-CMP kinase; ploop, 93.6 0.044 1.5E-06 51.5 3.9 25 128-152 3-27 (196)
311 3a00_A Guanylate kinase, GMP k 93.6 0.033 1.1E-06 52.1 2.8 25 129-153 2-26 (186)
312 1e6c_A Shikimate kinase; phosp 93.5 0.036 1.2E-06 51.0 3.1 24 129-152 3-26 (173)
313 2bwj_A Adenylate kinase 5; pho 93.5 0.042 1.4E-06 51.9 3.6 25 128-152 12-36 (199)
314 1y63_A LMAJ004144AAA protein; 93.5 0.043 1.5E-06 51.2 3.6 24 128-151 10-33 (184)
315 1ex7_A Guanylate kinase; subst 93.5 0.037 1.2E-06 51.5 3.0 24 129-152 2-25 (186)
316 3cm0_A Adenylate kinase; ATP-b 93.5 0.047 1.6E-06 50.9 3.9 24 129-152 5-28 (186)
317 1uf9_A TT1252 protein; P-loop, 93.5 0.045 1.5E-06 51.8 3.8 26 126-151 6-31 (203)
318 1ls1_A Signal recognition part 93.5 0.22 7.5E-06 50.3 9.0 87 127-216 97-189 (295)
319 2r6a_A DNAB helicase, replicat 93.4 1.5 5E-05 47.3 16.1 51 127-180 202-252 (454)
320 1ye8_A Protein THEP1, hypothet 93.4 0.048 1.6E-06 50.5 3.7 24 130-153 2-25 (178)
321 2yvu_A Probable adenylyl-sulfa 93.4 0.05 1.7E-06 50.8 3.9 28 127-154 12-39 (186)
322 2plr_A DTMP kinase, probable t 93.4 0.048 1.6E-06 52.1 3.9 26 129-154 5-30 (213)
323 2j37_W Signal recognition part 93.4 0.36 1.2E-05 52.4 11.1 40 126-167 99-138 (504)
324 3ney_A 55 kDa erythrocyte memb 93.4 0.048 1.6E-06 51.1 3.6 26 127-152 18-43 (197)
325 3a4m_A L-seryl-tRNA(SEC) kinas 93.3 0.049 1.7E-06 54.1 3.9 26 128-153 4-29 (260)
326 2if2_A Dephospho-COA kinase; a 93.3 0.043 1.5E-06 52.1 3.3 22 129-150 2-23 (204)
327 1qf9_A UMP/CMP kinase, protein 93.3 0.051 1.7E-06 50.9 3.8 25 128-152 6-30 (194)
328 2j41_A Guanylate kinase; GMP, 93.3 0.045 1.5E-06 52.0 3.4 25 128-152 6-30 (207)
329 2vli_A Antibiotic resistance p 93.3 0.037 1.3E-06 51.5 2.7 25 128-152 5-29 (183)
330 1cke_A CK, MSSA, protein (cyti 93.3 0.049 1.7E-06 52.7 3.7 24 129-152 6-29 (227)
331 3asz_A Uridine kinase; cytidin 93.3 0.049 1.7E-06 52.0 3.7 27 127-153 5-31 (211)
332 3umf_A Adenylate kinase; rossm 93.2 0.06 2.1E-06 51.4 4.1 28 125-152 26-53 (217)
333 2pt5_A Shikimate kinase, SK; a 93.2 0.054 1.8E-06 49.5 3.7 23 130-152 2-24 (168)
334 3aez_A Pantothenate kinase; tr 93.2 0.11 3.9E-06 52.7 6.4 42 127-168 89-130 (312)
335 4gp7_A Metallophosphoesterase; 93.2 0.042 1.5E-06 50.5 2.9 21 128-148 9-29 (171)
336 2f1r_A Molybdopterin-guanine d 93.2 0.052 1.8E-06 49.8 3.4 37 128-164 2-38 (171)
337 2bbw_A Adenylate kinase 4, AK4 93.2 0.052 1.8E-06 53.4 3.7 25 128-152 27-51 (246)
338 1lvg_A Guanylate kinase, GMP k 93.2 0.041 1.4E-06 52.0 2.8 24 129-152 5-28 (198)
339 2pbr_A DTMP kinase, thymidylat 93.1 0.056 1.9E-06 50.8 3.7 24 130-153 2-25 (195)
340 1odf_A YGR205W, hypothetical 3 93.1 0.063 2.2E-06 54.0 4.3 54 127-180 30-84 (290)
341 2cdn_A Adenylate kinase; phosp 93.1 0.056 1.9E-06 51.2 3.7 25 128-152 20-44 (201)
342 2z0h_A DTMP kinase, thymidylat 93.1 0.16 5.4E-06 47.7 6.9 25 130-154 2-26 (197)
343 2grj_A Dephospho-COA kinase; T 93.0 0.069 2.4E-06 50.0 4.2 27 126-152 10-36 (192)
344 1uj2_A Uridine-cytidine kinase 93.0 0.059 2E-06 53.2 3.9 27 127-153 21-47 (252)
345 3cmu_A Protein RECA, recombina 93.0 0.18 6.1E-06 63.4 8.7 84 127-217 1426-1515(2050)
346 4akg_A Glutathione S-transfera 92.9 1 3.5E-05 58.7 15.8 80 129-218 1268-1347(2695)
347 2wwf_A Thymidilate kinase, put 92.9 0.06 2.1E-06 51.4 3.6 32 128-160 10-41 (212)
348 1np6_A Molybdopterin-guanine d 92.9 0.11 3.7E-06 47.7 5.2 28 127-154 5-32 (174)
349 1gtv_A TMK, thymidylate kinase 92.9 0.038 1.3E-06 53.0 2.2 26 129-154 1-26 (214)
350 1aky_A Adenylate kinase; ATP:A 92.9 0.064 2.2E-06 51.6 3.8 25 128-152 4-28 (220)
351 3e70_C DPA, signal recognition 92.9 0.88 3E-05 46.4 12.5 58 126-185 127-185 (328)
352 1jjv_A Dephospho-COA kinase; P 92.9 0.058 2E-06 51.3 3.4 22 129-150 3-24 (206)
353 4e22_A Cytidylate kinase; P-lo 92.8 0.059 2E-06 53.1 3.6 25 128-152 27-51 (252)
354 1htw_A HI0065; nucleotide-bind 92.8 0.065 2.2E-06 48.4 3.4 25 128-152 33-57 (158)
355 1nn5_A Similar to deoxythymidy 92.8 0.064 2.2E-06 51.3 3.6 32 128-160 9-40 (215)
356 2qt1_A Nicotinamide riboside k 92.8 0.064 2.2E-06 51.1 3.6 26 126-151 19-44 (207)
357 1znw_A Guanylate kinase, GMP k 92.8 0.057 2E-06 51.4 3.2 25 128-152 20-44 (207)
358 1rz3_A Hypothetical protein rb 92.7 0.074 2.5E-06 50.3 4.0 28 127-154 21-48 (201)
359 2b8t_A Thymidine kinase; deoxy 92.7 0.034 1.2E-06 53.4 1.6 108 128-244 12-125 (223)
360 1gvn_B Zeta; postsegregational 92.7 0.069 2.3E-06 53.8 3.9 26 127-152 32-57 (287)
361 3fb4_A Adenylate kinase; psych 92.6 0.07 2.4E-06 51.2 3.7 23 130-152 2-24 (216)
362 1zd8_A GTP:AMP phosphotransfer 92.6 0.064 2.2E-06 52.0 3.4 25 128-152 7-31 (227)
363 2jeo_A Uridine-cytidine kinase 92.6 0.065 2.2E-06 52.6 3.4 25 128-152 25-49 (245)
364 1rj9_A FTSY, signal recognitio 92.5 0.086 2.9E-06 53.4 4.3 29 127-155 101-129 (304)
365 1s96_A Guanylate kinase, GMP k 92.5 0.069 2.3E-06 51.3 3.4 26 128-153 16-41 (219)
366 1z6g_A Guanylate kinase; struc 92.5 0.057 2E-06 51.9 2.8 24 129-152 24-47 (218)
367 1zak_A Adenylate kinase; ATP:A 92.4 0.065 2.2E-06 51.7 3.2 26 128-153 5-30 (222)
368 2pez_A Bifunctional 3'-phospho 92.4 0.087 3E-06 48.7 3.9 27 128-154 5-31 (179)
369 3dl0_A Adenylate kinase; phosp 92.3 0.076 2.6E-06 50.9 3.5 23 130-152 2-24 (216)
370 1m7g_A Adenylylsulfate kinase; 92.3 0.087 3E-06 50.3 3.9 26 128-153 25-50 (211)
371 2ffh_A Protein (FFH); SRP54, s 92.2 0.37 1.3E-05 51.0 8.9 57 127-186 97-155 (425)
372 2i3b_A HCR-ntpase, human cance 92.2 0.075 2.6E-06 49.6 3.2 24 130-153 3-26 (189)
373 3d3q_A TRNA delta(2)-isopenten 92.2 0.086 2.9E-06 53.9 3.8 24 129-152 8-31 (340)
374 3tlx_A Adenylate kinase 2; str 92.2 0.097 3.3E-06 51.3 4.1 25 128-152 29-53 (243)
375 3be4_A Adenylate kinase; malar 92.2 0.085 2.9E-06 50.6 3.6 25 128-152 5-29 (217)
376 2wsm_A Hydrogenase expression/ 92.2 0.14 4.6E-06 49.2 5.1 27 127-153 29-55 (221)
377 2v54_A DTMP kinase, thymidylat 92.1 0.083 2.8E-06 50.0 3.4 25 128-152 4-28 (204)
378 4a1f_A DNAB helicase, replicat 92.0 0.42 1.4E-05 49.0 8.7 51 128-182 46-96 (338)
379 3b9q_A Chloroplast SRP recepto 92.0 0.11 3.6E-06 52.7 4.2 28 127-154 99-126 (302)
380 3r20_A Cytidylate kinase; stru 91.9 0.097 3.3E-06 50.5 3.7 25 128-152 9-33 (233)
381 2hf9_A Probable hydrogenase ni 91.9 0.14 4.9E-06 49.2 5.0 27 127-153 37-63 (226)
382 3nwj_A ATSK2; P loop, shikimat 91.9 0.081 2.8E-06 51.9 3.1 24 129-152 49-72 (250)
383 3ake_A Cytidylate kinase; CMP 91.8 0.1 3.4E-06 49.6 3.7 23 130-152 4-26 (208)
384 2onk_A Molybdate/tungstate ABC 91.8 0.089 3.1E-06 51.3 3.4 26 126-152 23-48 (240)
385 1vht_A Dephospho-COA kinase; s 91.8 0.1 3.6E-06 50.0 3.8 23 128-150 4-26 (218)
386 2p5t_B PEZT; postsegregational 91.8 0.086 2.9E-06 52.0 3.2 26 127-152 31-56 (253)
387 2e87_A Hypothetical protein PH 91.8 0.48 1.6E-05 49.3 9.1 25 127-151 166-190 (357)
388 2f6r_A COA synthase, bifunctio 91.7 0.096 3.3E-06 52.5 3.6 25 126-150 73-97 (281)
389 1cr0_A DNA primase/helicase; R 91.6 0.29 1E-05 49.4 7.1 51 128-181 35-85 (296)
390 2xb4_A Adenylate kinase; ATP-b 91.6 0.11 3.7E-06 50.1 3.7 23 130-152 2-24 (223)
391 1a7j_A Phosphoribulokinase; tr 91.6 0.069 2.4E-06 53.8 2.3 42 127-170 4-45 (290)
392 3crm_A TRNA delta(2)-isopenten 91.6 0.11 3.6E-06 52.8 3.6 24 129-152 6-29 (323)
393 1zu4_A FTSY; GTPase, signal re 91.5 0.18 6.2E-06 51.4 5.4 40 126-167 103-142 (320)
394 4eaq_A DTMP kinase, thymidylat 91.5 0.19 6.4E-06 48.6 5.3 32 127-160 25-56 (229)
395 1e4v_A Adenylate kinase; trans 91.5 0.11 3.9E-06 49.6 3.7 23 130-152 2-24 (214)
396 2qtf_A Protein HFLX, GTP-bindi 91.5 0.19 6.5E-06 52.3 5.6 57 89-151 146-202 (364)
397 3lnc_A Guanylate kinase, GMP k 91.5 0.068 2.3E-06 51.9 2.1 24 129-152 28-52 (231)
398 2c61_A A-type ATP synthase non 91.4 0.25 8.6E-06 52.5 6.4 87 131-217 155-259 (469)
399 1yrb_A ATP(GTP)binding protein 91.4 0.17 5.8E-06 50.1 5.0 28 126-153 12-39 (262)
400 3b85_A Phosphate starvation-in 91.4 0.09 3.1E-06 50.0 2.8 23 129-151 23-45 (208)
401 1ak2_A Adenylate kinase isoenz 91.4 0.13 4.3E-06 50.0 3.9 25 128-152 16-40 (233)
402 3vr4_D V-type sodium ATPase su 91.3 0.27 9.1E-06 52.0 6.5 87 131-217 154-258 (465)
403 2pcj_A ABC transporter, lipopr 91.3 0.087 3E-06 50.8 2.7 24 129-152 31-54 (224)
404 3exa_A TRNA delta(2)-isopenten 91.3 0.1 3.6E-06 52.3 3.2 25 128-152 3-27 (322)
405 3tif_A Uncharacterized ABC tra 91.3 0.089 3.1E-06 51.1 2.7 25 128-152 31-55 (235)
406 1tue_A Replication protein E1; 91.2 0.11 3.6E-06 48.7 3.0 26 128-153 58-83 (212)
407 3end_A Light-independent proto 91.2 0.22 7.6E-06 50.6 5.7 42 126-169 39-80 (307)
408 3sr0_A Adenylate kinase; phosp 91.2 0.13 4.6E-06 48.7 3.7 23 130-152 2-24 (206)
409 1ypw_A Transitional endoplasmi 91.1 0.19 6.4E-06 58.6 5.7 129 128-276 238-386 (806)
410 3geh_A MNME, tRNA modification 91.1 0.17 5.9E-06 54.5 5.0 85 45-152 161-248 (462)
411 2og2_A Putative signal recogni 91.1 0.15 5E-06 52.9 4.2 28 127-154 156-183 (359)
412 2q6t_A DNAB replication FORK h 91.0 1 3.5E-05 48.3 11.1 52 127-181 199-250 (444)
413 3foz_A TRNA delta(2)-isopenten 91.0 0.14 4.6E-06 51.4 3.6 26 127-152 9-34 (316)
414 3l0o_A Transcription terminati 90.9 0.076 2.6E-06 54.7 1.8 40 129-169 176-216 (427)
415 1sq5_A Pantothenate kinase; P- 90.9 0.13 4.6E-06 52.3 3.7 27 127-153 79-105 (308)
416 2cbz_A Multidrug resistance-as 90.9 0.1 3.6E-06 50.7 2.7 25 128-152 31-55 (237)
417 3a8t_A Adenylate isopentenyltr 90.9 0.099 3.4E-06 53.2 2.6 25 128-152 40-64 (339)
418 3v9p_A DTMP kinase, thymidylat 90.8 0.73 2.5E-05 44.2 8.6 28 128-155 25-52 (227)
419 2d2e_A SUFC protein; ABC-ATPas 90.7 0.13 4.4E-06 50.6 3.2 23 129-151 30-52 (250)
420 1b0u_A Histidine permease; ABC 90.7 0.11 3.8E-06 51.4 2.7 25 128-152 32-56 (262)
421 2afh_E Nitrogenase iron protei 90.7 0.28 9.6E-06 49.3 5.8 40 128-169 2-41 (289)
422 3gfo_A Cobalt import ATP-bindi 90.5 0.11 3.9E-06 51.6 2.7 23 129-151 35-57 (275)
423 1ji0_A ABC transporter; ATP bi 90.5 0.12 4E-06 50.5 2.7 24 129-152 33-56 (240)
424 1sgw_A Putative ABC transporte 90.5 0.099 3.4E-06 49.9 2.1 24 129-152 36-59 (214)
425 3lv8_A DTMP kinase, thymidylat 90.5 0.4 1.4E-05 46.4 6.5 37 128-165 27-63 (236)
426 1oix_A RAS-related protein RAB 90.5 0.18 6E-06 47.2 3.9 26 127-152 28-53 (191)
427 1ltq_A Polynucleotide kinase; 90.5 0.15 5.3E-06 51.6 3.8 23 129-151 3-25 (301)
428 2r8r_A Sensor protein; KDPD, P 90.5 0.21 7.3E-06 47.5 4.4 40 130-171 8-47 (228)
429 2olj_A Amino acid ABC transpor 90.5 0.12 4E-06 51.2 2.7 26 127-152 49-74 (263)
430 2zu0_C Probable ATP-dependent 90.5 0.14 4.7E-06 50.9 3.2 23 129-151 47-69 (267)
431 4tmk_A Protein (thymidylate ki 90.5 0.43 1.5E-05 45.4 6.6 52 129-181 4-55 (213)
432 4g1u_C Hemin import ATP-bindin 90.5 0.12 4E-06 51.3 2.7 25 128-152 37-61 (266)
433 2pze_A Cystic fibrosis transme 90.4 0.12 4.1E-06 50.0 2.7 24 129-152 35-58 (229)
434 1g6h_A High-affinity branched- 90.4 0.12 4.1E-06 51.0 2.7 24 129-152 34-57 (257)
435 2yhs_A FTSY, cell division pro 90.4 0.18 6.2E-06 54.1 4.2 42 127-171 292-333 (503)
436 1mv5_A LMRA, multidrug resista 90.4 0.13 4.4E-06 50.3 2.9 24 128-151 28-51 (243)
437 2ff7_A Alpha-hemolysin translo 90.3 0.13 4.3E-06 50.5 2.7 24 129-152 36-59 (247)
438 1cp2_A CP2, nitrogenase iron p 90.3 0.24 8.2E-06 49.2 4.9 39 129-169 2-40 (269)
439 3tmk_A Thymidylate kinase; pho 90.2 0.99 3.4E-05 42.9 8.9 27 128-154 5-31 (216)
440 2eyu_A Twitching motility prot 90.2 0.17 5.7E-06 50.1 3.6 26 128-153 25-50 (261)
441 3cmw_A Protein RECA, recombina 90.2 0.58 2E-05 58.0 9.0 86 127-219 382-473 (1706)
442 1vpl_A ABC transporter, ATP-bi 90.2 0.13 4.4E-06 50.6 2.7 24 129-152 42-65 (256)
443 2dyk_A GTP-binding protein; GT 90.1 0.18 6.3E-06 45.2 3.6 23 129-151 2-24 (161)
444 2ga8_A Hypothetical 39.9 kDa p 90.0 0.21 7.3E-06 51.1 4.2 27 127-153 23-49 (359)
445 2qi9_C Vitamin B12 import ATP- 90.0 0.14 4.7E-06 50.2 2.7 24 129-152 27-50 (249)
446 2ghi_A Transport protein; mult 90.0 0.14 4.7E-06 50.7 2.7 23 129-151 47-69 (260)
447 2ixe_A Antigen peptide transpo 89.9 0.14 4.8E-06 51.0 2.7 25 128-152 45-69 (271)
448 3eph_A TRNA isopentenyltransfe 89.9 0.19 6.5E-06 52.4 3.8 24 129-152 3-26 (409)
449 4edh_A DTMP kinase, thymidylat 89.9 0.54 1.8E-05 44.7 6.7 31 129-160 7-37 (213)
450 3ld9_A DTMP kinase, thymidylat 89.9 0.38 1.3E-05 46.0 5.7 28 127-154 20-47 (223)
451 3gqb_B V-type ATP synthase bet 89.9 0.54 1.9E-05 49.6 7.2 88 130-217 149-261 (464)
452 2qmh_A HPR kinase/phosphorylas 89.8 0.14 4.7E-06 47.6 2.4 24 129-152 35-58 (205)
453 2wji_A Ferrous iron transport 89.8 0.21 7.1E-06 45.3 3.7 23 129-151 4-26 (165)
454 2v9p_A Replication protein E1; 89.8 0.16 5.6E-06 51.1 3.2 25 128-152 126-150 (305)
455 2yz2_A Putative ABC transporte 89.7 0.15 5E-06 50.7 2.7 23 129-151 34-56 (266)
456 2nq2_C Hypothetical ABC transp 89.7 0.15 5.1E-06 50.2 2.7 24 129-152 32-55 (253)
457 2ihy_A ABC transporter, ATP-bi 89.7 0.15 5.1E-06 51.0 2.7 24 129-152 48-71 (279)
458 3p32_A Probable GTPase RV1496/ 89.7 0.3 1E-05 50.8 5.2 28 127-154 78-105 (355)
459 1q57_A DNA primase/helicase; d 89.5 0.86 2.9E-05 49.9 9.0 57 127-186 241-298 (503)
460 2f9l_A RAB11B, member RAS onco 89.5 0.23 7.8E-06 46.7 3.8 24 128-151 5-28 (199)
461 1q3t_A Cytidylate kinase; nucl 89.5 0.23 7.9E-06 48.3 3.9 27 126-152 14-40 (236)
462 3zvl_A Bifunctional polynucleo 89.4 0.15 5.1E-06 54.4 2.7 28 125-152 255-282 (416)
463 2ocp_A DGK, deoxyguanosine kin 89.4 0.22 7.4E-06 48.7 3.6 26 128-153 2-27 (241)
464 2orw_A Thymidine kinase; TMTK, 89.4 0.26 8.9E-06 45.7 4.0 27 129-155 4-30 (184)
465 3iqw_A Tail-anchored protein t 89.4 0.41 1.4E-05 49.1 5.8 44 126-171 14-57 (334)
466 2v3c_C SRP54, signal recogniti 89.3 0.2 6.8E-06 53.4 3.5 39 127-167 98-136 (432)
467 3io3_A DEHA2D07832P; chaperone 89.3 0.42 1.5E-05 49.3 5.9 45 125-171 15-61 (348)
468 3cmw_A Protein RECA, recombina 89.2 0.79 2.7E-05 56.9 9.0 83 129-218 1432-1520(1706)
469 1nlf_A Regulatory protein REPA 89.2 0.19 6.5E-06 50.3 3.1 26 128-153 30-55 (279)
470 3cwq_A Para family chromosome 89.2 0.49 1.7E-05 44.9 5.9 42 130-174 2-44 (209)
471 2zej_A Dardarin, leucine-rich 89.2 0.16 5.6E-06 47.0 2.5 21 130-150 4-24 (184)
472 3kjh_A CO dehydrogenase/acetyl 89.2 0.41 1.4E-05 46.8 5.5 41 131-173 3-43 (254)
473 1nij_A Hypothetical protein YJ 89.1 0.2 6.7E-06 51.3 3.2 25 127-151 3-27 (318)
474 3cf2_A TER ATPase, transitiona 89.1 0.38 1.3E-05 55.3 5.8 72 128-219 511-582 (806)
475 3sop_A Neuronal-specific septi 89.1 0.21 7.3E-06 49.6 3.4 24 130-153 4-27 (270)
476 4dzz_A Plasmid partitioning pr 89.1 0.42 1.4E-05 45.0 5.4 43 129-173 2-45 (206)
477 3cmu_A Protein RECA, recombina 88.9 0.76 2.6E-05 57.9 8.6 86 127-219 382-473 (2050)
478 3fkq_A NTRC-like two-domain pr 88.8 0.49 1.7E-05 49.6 6.1 45 125-171 140-185 (373)
479 1tf7_A KAIC; homohexamer, hexa 88.7 0.78 2.7E-05 50.5 8.0 39 128-168 39-78 (525)
480 2ck3_A ATP synthase subunit al 88.7 0.83 2.8E-05 48.9 7.7 88 130-217 164-272 (510)
481 2ce2_X GTPase HRAS; signaling 88.6 0.24 8.1E-06 44.5 3.1 22 130-151 5-26 (166)
482 2pjz_A Hypothetical protein ST 88.6 0.2 6.9E-06 49.5 2.7 23 129-151 31-53 (263)
483 3fdi_A Uncharacterized protein 88.5 0.27 9.2E-06 46.4 3.5 26 128-153 6-31 (201)
484 3kta_A Chromosome segregation 88.5 0.25 8.4E-06 45.7 3.2 24 129-152 27-50 (182)
485 2qe7_A ATP synthase subunit al 88.5 0.69 2.4E-05 49.4 6.9 84 130-217 164-264 (502)
486 2wjg_A FEOB, ferrous iron tran 88.4 0.29 1E-05 45.3 3.7 24 128-151 7-30 (188)
487 3nh6_A ATP-binding cassette SU 88.4 0.17 5.8E-06 51.1 2.1 25 127-151 79-103 (306)
488 2bbs_A Cystic fibrosis transme 88.2 0.21 7.2E-06 50.1 2.7 25 128-152 64-88 (290)
489 2vp4_A Deoxynucleoside kinase; 88.2 0.17 5.9E-06 49.0 2.0 25 127-151 19-43 (230)
490 1svm_A Large T antigen; AAA+ f 88.2 0.26 8.9E-06 51.4 3.4 26 127-152 168-193 (377)
491 1z2a_A RAS-related protein RAB 88.2 0.33 1.1E-05 43.8 3.9 24 128-151 5-28 (168)
492 2r9v_A ATP synthase subunit al 88.2 0.6 2E-05 50.0 6.1 83 131-217 178-277 (515)
493 3hws_A ATP-dependent CLP prote 88.1 0.25 8.7E-06 51.6 3.3 25 128-152 51-75 (363)
494 3con_A GTPase NRAS; structural 88.1 0.27 9.1E-06 45.7 3.2 23 129-151 22-44 (190)
495 3gee_A MNME, tRNA modification 88.0 0.17 5.7E-06 54.8 1.9 87 46-151 170-256 (476)
496 3tui_C Methionine import ATP-b 87.9 0.27 9.2E-06 50.8 3.2 25 128-152 54-78 (366)
497 1r8s_A ADP-ribosylation factor 87.8 0.31 1.1E-05 43.8 3.4 22 131-152 3-24 (164)
498 3fvq_A Fe(3+) IONS import ATP- 87.7 0.27 9.4E-06 50.7 3.2 25 128-152 30-54 (359)
499 2ged_A SR-beta, signal recogni 87.7 0.33 1.1E-05 45.1 3.6 25 127-151 47-71 (193)
500 1nrj_B SR-beta, signal recogni 87.7 0.33 1.1E-05 46.3 3.6 27 126-152 10-36 (218)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.4e-43 Score=398.32 Aligned_cols=291 Identities=14% Similarity=0.134 Sum_probs=224.3
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHH--HhhhccCCCEEEEEEeCCCC--CHHHHHHHHHHHhCCCCc--------hhHHH
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFAR--RAIEDELYDMVVFSEVTQSP--DIKQIQQEIAEKLGLELS--------EEAEF 193 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~--------~~~~~ 193 (790)
...++|+|+||||+||||||+++|+ +.+.+.+|+.++||++++.. +...+++.|+.+++.... ..+..
T Consensus 150 ~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~ 229 (549)
T 2a5y_B 150 LDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSV 229 (549)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHH
Confidence 3579999999999999999999998 46677889999999999885 899999999999986521 11223
Q ss_pred HHHHHHHHHHHcCCcEEEEEeCCCCccCccccCccCCCCCCCcEEEEEeCChhHHhhhC-CCceEEccCCCHHHHHHHHH
Q 039180 194 RRASRMFERLKNEKKILLILDNTWKSLDLGTIGIPFGVEHRGCKLLFTTRDLDVLIRMG-SEKNFSIGILNEQEAWRLFK 272 (790)
Q Consensus 194 ~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtR~~~v~~~~~-~~~~~~l~~L~~~~~~~Lf~ 272 (790)
.....+.+.+..+|||||||||||+..++ .+ + ..+||+||||||+..++..++ ....|++++|+.++||+||.
T Consensus 230 ~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~----~-~~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~ 303 (549)
T 2a5y_B 230 VLKRMICNALIDRPNTLFVFDDVVQEETI-RW----A-QELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLE 303 (549)
T ss_dssp HHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH----H-HHTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcEEEEEECCCCchhh-cc----c-ccCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHH
Confidence 34566666776434999999999998754 11 1 127999999999999998876 44689999999999999999
Q ss_pred HHhCCCCCCcchHHHHHHHHHHhcCCcHHHHHHHHHHhcCChhHHHHHHHHhcCCCCCCcCCCCchhhhhhHHHHHHHHh
Q 039180 273 IIAGAYVENRELKSTATSVAKACRGLPIALTIVVKALRNKELPEWKNALQELQMPSETSFDEGVPAEAYSTIELSYKYLG 352 (790)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~~l~~sy~~L~ 352 (790)
+.++.....+.+++++++|+++|+|+||||+++|+.|+.+.. +|...+....+. .....+ ..++.+||+.||
T Consensus 304 ~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~---~~~~~i----~~~l~~Sy~~L~ 375 (549)
T 2a5y_B 304 AYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLES---RGLVGV----ECITPYSYKSLA 375 (549)
T ss_dssp HTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHH---HCSSTT----CCCSSSSSSSHH
T ss_pred HHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhc---ccHHHH----HHHHhccccccc
Confidence 998765445778889999999999999999999999987642 332323221110 012344 888999999999
Q ss_pred HHhHHHHh-----------hhcccC-CCCHHHHHHHHhhc--CccchHH----HHHHHHHHHHHHHhccceeeeC--CcC
Q 039180 353 KQLKETIL-----------LCSLIA-PTSIMDLINYTMGF--GVLKLEE----AHNKLHAWVRQLRDSCLLLVDG--SSK 412 (790)
Q Consensus 353 ~~~k~~f~-----------~~s~fp-~~~~~~Li~~w~~e--g~~~~~~----~~~~~~~~~~~L~~~sll~~~~--~~~ 412 (790)
+++|.||+ |||+|| ++... ++.|+|+ ||+.... .++..+ ++++|+++||++... ...
T Consensus 376 ~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~ 452 (549)
T 2a5y_B 376 MALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRMPVL 452 (549)
T ss_dssp HHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECSSSC
T ss_pred HHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCCCce
Confidence 99999999 999998 55444 8999999 9895432 333334 999999999999863 456
Q ss_pred eEEeChhhHHHHHHHhhhccc
Q 039180 413 FFSMHDVLRDVAISIACRDMN 433 (790)
Q Consensus 413 ~~~~h~li~~~~~~~~~~e~~ 433 (790)
+|+|||++|++|+.++.+++.
T Consensus 453 ~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 453 TFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp EEECCHHHHHHHHTTSCTHHH
T ss_pred EEEeChHHHHHHHHHHHHHHH
Confidence 899999999999988876653
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=3.6e-35 Score=333.44 Aligned_cols=261 Identities=16% Similarity=0.137 Sum_probs=204.6
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCE-EEEEEeCCCCCHHHHHHHHHHHhCC---C----Cc----hhHH-H
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDM-VVFSEVTQSPDIKQIQQEIAEKLGL---E----LS----EEAE-F 193 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~---~----~~----~~~~-~ 193 (790)
..++|+|+||||+||||||+++|++.+...+|+. ++|+++++..+...++..|++.++. . .. .... .
T Consensus 149 ~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~le 228 (1221)
T 1vt4_I 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228 (1221)
T ss_dssp SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHCSSSTTTSCCCSSHHHHHH
T ss_pred CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcCcccccccccccCCCCCHH
Confidence 4789999999999999999999988766777986 9999999999988888888775321 1 00 1111 2
Q ss_pred HHHHHHHHHHH--cCCcEEEEEeCCCCccCccccCccCCCCCCCcEEEEEeCChhHHhhhCCCceEEcc------CCCHH
Q 039180 194 RRASRMFERLK--NEKKILLILDNTWKSLDLGTIGIPFGVEHRGCKLLFTTRDLDVLIRMGSEKNFSIG------ILNEQ 265 (790)
Q Consensus 194 ~~~~~l~~~l~--~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtR~~~v~~~~~~~~~~~l~------~L~~~ 265 (790)
.....+.+.+. .++|+||||||||+.+.|+.+ .+||+||||||++.++..+.....+.++ +|+.+
T Consensus 229 eL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~e 301 (1221)
T 1vt4_I 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301 (1221)
T ss_dssp HHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHH
T ss_pred HHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-------CCCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHH
Confidence 22344444442 468999999999998888754 2689999999999988754433456666 89999
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHHHHHHHHHHhcC--ChhHHHHHHHHhcCCCCCCcCCCCchhhhhh
Q 039180 266 EAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIALTIVVKALRNK--ELPEWKNALQELQMPSETSFDEGVPAEAYST 343 (790)
Q Consensus 266 ~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~--~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~~ 343 (790)
||++||.+..... ..++..+| |+|+||||+++|+.|+++ +.++|+.. . ...+..+
T Consensus 302 EA~eLF~~~~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~-----------~----~~~I~aa 358 (1221)
T 1vt4_I 302 EVKSLLLKYLDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV-----------N----CDKLTTI 358 (1221)
T ss_dssp HHHHHHHHHHCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC-----------S----CHHHHHH
T ss_pred HHHHHHHHHcCCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC-----------C----hhHHHHH
Confidence 9999999985432 12233333 999999999999999976 67888752 1 2345999
Q ss_pred HHHHHHHHhHHh-HHHHhhhcccC---CCCHHHHHHHHhhcCccchHHHHHHHHHHHHHHHhccceeeeCCcCeEEeChh
Q 039180 344 IELSYKYLGKQL-KETILLCSLIA---PTSIMDLINYTMGFGVLKLEEAHNKLHAWVRQLRDSCLLLVDGSSKFFSMHDV 419 (790)
Q Consensus 344 l~~sy~~L~~~~-k~~f~~~s~fp---~~~~~~Li~~w~~eg~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~h~l 419 (790)
+.+||+.||+++ |.||++||+|| .|+...++.+|+++| ++.+.+++++|+++||++..+....|+|||+
T Consensus 359 LelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-------eedAe~~L~eLvdRSLLq~d~~~~rYrMHDL 431 (1221)
T 1vt4_I 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-------KSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431 (1221)
T ss_dssp HHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-------SHHHHHHHHHHHTSSSSSBCSSSSEEBCCCH
T ss_pred HHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-------HHHHHHHHHHHHhhCCEEEeCCCCEEEehHH
Confidence 999999999999 99999999999 577888999999987 1235678999999999998766789999999
Q ss_pred hHHHH
Q 039180 420 LRDVA 424 (790)
Q Consensus 420 i~~~~ 424 (790)
+++++
T Consensus 432 llELr 436 (1221)
T 1vt4_I 432 YLELK 436 (1221)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99855
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=8e-33 Score=346.78 Aligned_cols=290 Identities=19% Similarity=0.269 Sum_probs=223.9
Q ss_pred cCCceeEEEEEcCCCCcHhHHHHHHHHHhhh-cc-CCCEEEEEEeCCCCC--HHHHHHHHHHHhCCCCc-----hhHHHH
Q 039180 124 EDIWLNIIGVYGMGGIGKTTLVKEFARRAIE-DE-LYDMVVFSEVTQSPD--IKQIQQEIAEKLGLELS-----EEAEFR 194 (790)
Q Consensus 124 ~~~~~~vv~I~G~~G~GKTtLa~~~~~~~~~-~~-~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~-----~~~~~~ 194 (790)
.+++.++|+|+||||+||||||+++|++.+. .. .++.++|+++++..+ ....++.++..+..... ......
T Consensus 143 ~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 222 (1249)
T 3sfz_A 143 LNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEE 222 (1249)
T ss_dssp TTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHH
T ss_pred ccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHH
Confidence 3567899999999999999999999987543 23 457899999988543 44556777777765421 112223
Q ss_pred HHHHHHHHHHc-CCcEEEEEeCCCCccCccccCccCCCCCCCcEEEEEeCChhHHhh-hCCCceEEccC-CCHHHHHHHH
Q 039180 195 RASRMFERLKN-EKKILLILDNTWKSLDLGTIGIPFGVEHRGCKLLFTTRDLDVLIR-MGSEKNFSIGI-LNEQEAWRLF 271 (790)
Q Consensus 195 ~~~~l~~~l~~-~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtR~~~v~~~-~~~~~~~~l~~-L~~~~~~~Lf 271 (790)
....+...+.. ++||||||||||+..+|..+ .+||+||||||++.++.. ++....+.+++ |+.++|++||
T Consensus 223 ~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~ 295 (1249)
T 3sfz_A 223 AKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEIL 295 (1249)
T ss_dssp HHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHH
T ss_pred HHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHH
Confidence 33444444442 24999999999998877654 568999999999999855 56667899996 9999999999
Q ss_pred HHHhCCCCCCcchHHHHHHHHHHhcCCcHHHHHHHHHHhcCChhHHHHHHHHhcCCCCCCcC---CCCchhhhhhHHHHH
Q 039180 272 KIIAGAYVENRELKSTATSVAKACRGLPIALTIVVKALRNKELPEWKNALQELQMPSETSFD---EGVPAEAYSTIELSY 348 (790)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~~~l~~l~~~~~~~~~---~~~~~~~~~~l~~sy 348 (790)
...++.. .+..++.+++|+++|+|+||||+++|++|+.+. ..|+..++.+......... ..-...+..++.+||
T Consensus 296 ~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~ 372 (1249)
T 3sfz_A 296 SLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISV 372 (1249)
T ss_dssp HHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHH
T ss_pred HHhhCCC--hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHH
Confidence 9988532 234456799999999999999999999999764 4688888887654432211 111235789999999
Q ss_pred HHHhHHhHHHHhhhcccC---CCCHHHHHHHHhhcCccchHHHHHHHHHHHHHHHhccceeeeC--CcCeEEeChhhHHH
Q 039180 349 KYLGKQLKETILLCSLIA---PTSIMDLINYTMGFGVLKLEEAHNKLHAWVRQLRDSCLLLVDG--SSKFFSMHDVLRDV 423 (790)
Q Consensus 349 ~~L~~~~k~~f~~~s~fp---~~~~~~Li~~w~~eg~~~~~~~~~~~~~~~~~L~~~sll~~~~--~~~~~~~h~li~~~ 423 (790)
+.|++++|.||+|||+|| .|+...++..|.+++ +.+++++++|+++||++... ...+|+||+++|++
T Consensus 373 ~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~--------~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~ 444 (1249)
T 3sfz_A 373 EMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLET--------EEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDF 444 (1249)
T ss_dssp HTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCH--------HHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHH
T ss_pred HhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCH--------HHHHHHHHHHHhccceEEecCCCceEEEecHHHHHH
Confidence 999999999999999998 688999999997752 44567899999999999763 33469999999999
Q ss_pred HHHHhhhc
Q 039180 424 AISIACRD 431 (790)
Q Consensus 424 ~~~~~~~e 431 (790)
++..+.++
T Consensus 445 ~~~~~~~~ 452 (1249)
T 3sfz_A 445 LTEKNRSQ 452 (1249)
T ss_dssp HHHHTGGG
T ss_pred HHhhhhHH
Confidence 99887654
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.97 E-value=2.9e-30 Score=296.28 Aligned_cols=284 Identities=19% Similarity=0.273 Sum_probs=211.0
Q ss_pred CCceeEEEEEcCCCCcHhHHHHHHHHHhhh-ccCC-CEEEEEEeCCCCCHHHHHHH---HHHHhCCC-----CchhHHHH
Q 039180 125 DIWLNIIGVYGMGGIGKTTLVKEFARRAIE-DELY-DMVVFSEVTQSPDIKQIQQE---IAEKLGLE-----LSEEAEFR 194 (790)
Q Consensus 125 ~~~~~vv~I~G~~G~GKTtLa~~~~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~~~---i~~~l~~~-----~~~~~~~~ 194 (790)
.++.++|+|+|+||+||||||.+++++... ..+| +.++|++++.. +...+... ++..++.. ........
T Consensus 144 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~ 222 (591)
T 1z6t_A 144 KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEE 222 (591)
T ss_dssp TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHH
T ss_pred cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHHHHHhccccccccCCCCCHHH
Confidence 356899999999999999999999987644 4568 58999999876 33333333 34455421 11122233
Q ss_pred HHHHHHHHHHc-CCcEEEEEeCCCCccCccccCccCCCCCCCcEEEEEeCChhHHhhhCCCceEEc---cCCCHHHHHHH
Q 039180 195 RASRMFERLKN-EKKILLILDNTWKSLDLGTIGIPFGVEHRGCKLLFTTRDLDVLIRMGSEKNFSI---GILNEQEAWRL 270 (790)
Q Consensus 195 ~~~~l~~~l~~-~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtR~~~v~~~~~~~~~~~l---~~L~~~~~~~L 270 (790)
....+...+.. .+++||||||+|+...+..+ .+|++||||||+..++..+. ...+.+ ++|+.+++++|
T Consensus 223 ~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~~-~~~~~v~~l~~L~~~ea~~L 294 (591)
T 1z6t_A 223 AKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSVM-GPKYVVPVESSLGKEKGLEI 294 (591)
T ss_dssp HHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTCC-SCEEEEECCSSCCHHHHHHH
T ss_pred HHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhcC-CCceEeecCCCCCHHHHHHH
Confidence 44455555553 37899999999987665432 46899999999998876644 234555 58999999999
Q ss_pred HHHHhCCCCCCcchHHHHHHHHHHhcCCcHHHHHHHHHHhcCChhHHHHHHHHhcCCCCCCc---CCCCchhhhhhHHHH
Q 039180 271 FKIIAGAYVENRELKSTATSVAKACRGLPIALTIVVKALRNKELPEWKNALQELQMPSETSF---DEGVPAEAYSTIELS 347 (790)
Q Consensus 271 f~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~~~l~~l~~~~~~~~---~~~~~~~~~~~l~~s 347 (790)
|...++.. .....+.+.+|+++|+|+|+||..+|+.++... ..|...++.+........ ...-...+..++..|
T Consensus 295 ~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s 371 (591)
T 1z6t_A 295 LSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSIS 371 (591)
T ss_dssp HHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHH
T ss_pred HHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHH
Confidence 99988642 122345789999999999999999999998763 368888888765432211 111224568899999
Q ss_pred HHHHhHHhHHHHhhhcccC---CCCHHHHHHHHhhcCccchHHHHHHHHHHHHHHHhccceeee--CCcCeEEeChhhHH
Q 039180 348 YKYLGKQLKETILLCSLIA---PTSIMDLINYTMGFGVLKLEEAHNKLHAWVRQLRDSCLLLVD--GSSKFFSMHDVLRD 422 (790)
Q Consensus 348 y~~L~~~~k~~f~~~s~fp---~~~~~~Li~~w~~eg~~~~~~~~~~~~~~~~~L~~~sll~~~--~~~~~~~~h~li~~ 422 (790)
|+.||++.|.||.+||+|| .++...+...|.+++ ..+.+++++|+++||++.. +....|+||+++|+
T Consensus 372 ~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~--------~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~ 443 (591)
T 1z6t_A 372 VEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMET--------EEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVD 443 (591)
T ss_dssp HHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCH--------HHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHH
T ss_pred HHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCH--------HHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHH
Confidence 9999999999999999998 488888999997641 2356789999999999865 34558999999999
Q ss_pred HHHHHh
Q 039180 423 VAISIA 428 (790)
Q Consensus 423 ~~~~~~ 428 (790)
+++...
T Consensus 444 ~~~~~~ 449 (591)
T 1z6t_A 444 FLTEKN 449 (591)
T ss_dssp HHHHHT
T ss_pred HHHhhh
Confidence 999773
No 5
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=2.2e-25 Score=247.62 Aligned_cols=320 Identities=17% Similarity=0.187 Sum_probs=232.4
Q ss_pred EecCCccccCCCcccccceeEEEeecccccCC-CCcc-CccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccc
Q 039180 436 VVRNKNMWEWPNPDALKKYLAISLINSRINDI-PEGL-ESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLL 513 (790)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l-~~~~-~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~ 513 (790)
.+.+..+..++. .+.+++++++++|.+..+ |..+ .++++++|.+.++.... .++...|.++++|++|++++|.+
T Consensus 16 ~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~--~i~~~~~~~l~~L~~L~Ls~n~l 91 (455)
T 3v47_A 16 ICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGL--VIRNNTFRGLSSLIILKLDYNQF 91 (455)
T ss_dssp ECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTC--EECTTTTTTCTTCCEEECTTCTT
T ss_pred CcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccc--eECcccccccccCCEEeCCCCcc
Confidence 334445566665 668999999999999877 4444 67788888777665443 47777789999999999999999
Q ss_pred cCC-ChhhhhccccceeeccCccccccchhh--hhccCcccEEeccCCCCccc-chh-hhcccccceecCCccccccccC
Q 039180 514 SSL-PSSIYLLVNLQTLCLDQSILRDIDIAI--IGKLKNLKILSFVRSDIVQL-PKA-LGELTKLRLSDLTDCFHLKVIA 588 (790)
Q Consensus 514 ~~l-p~~~~~l~~L~~L~L~~~~l~~l~p~~--i~~l~~L~~L~L~~~~l~~l-p~~-l~~l~~L~~L~l~~~~~l~~~~ 588 (790)
..+ |..++++++|++|+|++|.+++..|.. ++.+++|++|++++|.++.+ |.. +.++++|++|++++| .+..++
T Consensus 92 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~ 170 (455)
T 3v47_A 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN-KVKSIC 170 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC-CBSCCC
T ss_pred CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC-cccccC
Confidence 865 889999999999999999998754555 89999999999999999866 544 789999999999998 555555
Q ss_pred chhhccc----------------------------------cccceEecccCCccchhhccccc----------------
Q 039180 589 PNVISSL----------------------------------TRLEELYMGNCPIEWEVERANSE---------------- 618 (790)
Q Consensus 589 ~~~l~~l----------------------------------~~L~~L~l~~~~~~~~~~~~~~~---------------- 618 (790)
+..+..+ ++|++|++++|.+....+.....
T Consensus 171 ~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 250 (455)
T 3v47_A 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250 (455)
T ss_dssp TTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCT
T ss_pred hhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccc
Confidence 4444443 56777888777664322210000
Q ss_pred ----------cccccccccc--CCCCCcEEEEEecCCCCCCcc-c-cccccceeEEEecCCCCCCC-ccccCCccCeeec
Q 039180 619 ----------RSNSSLDELM--NLPWLTTLEIDVKNDSILPES-F-LTQKLERFKISIGNESFMPS-QSVELPNLEALEL 683 (790)
Q Consensus 619 ----------~~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l 683 (790)
........+. ..++|+.|++++|.+...+.. + .+++|+.|++++|.+...+. .+..+++|+.|++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 330 (455)
T 3v47_A 251 NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL 330 (455)
T ss_dssp TTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEEC
Confidence 0000000011 135788888888876654332 2 36889999998888876644 6677889999999
Q ss_pred cceecceecccCCCccccccCCCccEEeeccCCcccccchhHHHhccccccEEeeccCchhhhHhhcCCCCCCCCcccCC
Q 039180 684 CAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFELLRELSIADCRGLREIISKDRADHVTPCFVFP 763 (790)
Q Consensus 684 ~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~p 763 (790)
++|.++++ +|..++.+++|+.|+|++| .++.+++ ..+.++++|+.|++++| .++.++.... ..++
T Consensus 331 s~N~l~~~-----~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~~~-------~~l~ 395 (455)
T 3v47_A 331 SQNFLGSI-----DSRMFENLDKLEVLDLSYN-HIRALGD-QSFLGLPNLKELALDTN-QLKSVPDGIF-------DRLT 395 (455)
T ss_dssp CSSCCCEE-----CGGGGTTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSS-CCSCCCTTTT-------TTCT
T ss_pred CCCccCCc-----ChhHhcCcccCCEEECCCC-cccccCh-hhccccccccEEECCCC-ccccCCHhHh-------ccCC
Confidence 99988765 4666788899999999998 4566532 45678899999999987 4665554322 2489
Q ss_pred ccceeecccccc
Q 039180 764 QMTTLRLEILPE 775 (790)
Q Consensus 764 ~L~~L~l~~c~~ 775 (790)
+|++|+|+++|-
T Consensus 396 ~L~~L~l~~N~l 407 (455)
T 3v47_A 396 SLQKIWLHTNPW 407 (455)
T ss_dssp TCCEEECCSSCB
T ss_pred cccEEEccCCCc
Confidence 999999987653
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=7.8e-25 Score=244.58 Aligned_cols=307 Identities=21% Similarity=0.204 Sum_probs=243.4
Q ss_pred ecCCccccCCCcccccceeEEEeecccccCCCC-cc-CccccceeecccCCCCCCCCCChhhhccCCceEEEEecCcccc
Q 039180 437 VRNKNMWEWPNPDALKKYLAISLINSRINDIPE-GL-ESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLS 514 (790)
Q Consensus 437 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~-~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~ 514 (790)
+.+..+..+|. ..+..++.+++++|.+..+++ .+ .++++++|.+.++ .+. .+++..|.++++|++|+|++|.++
T Consensus 18 c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~--~~~~~~~~~l~~L~~L~L~~n~l~ 93 (477)
T 2id5_A 18 CHRKRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVS--AVEPGAFNNLFNLRTLGLRSNRLK 93 (477)
T ss_dssp CCSCCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCC--EECTTTTTTCTTCCEEECCSSCCC
T ss_pred eCCCCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccC--EeChhhhhCCccCCEEECCCCcCC
Confidence 34444555453 456789999999999988754 33 6777888777655 444 465566789999999999999999
Q ss_pred CCCh-hhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCccc-chhhhcccccceecCCccccccccCchhh
Q 039180 515 SLPS-SIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQL-PKALGELTKLRLSDLTDCFHLKVIAPNVI 592 (790)
Q Consensus 515 ~lp~-~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~l~~~~~l~~~~~~~l 592 (790)
.+|. .|.++++|++|+|++|.+..+.|..+.++++|++|++++|.+..+ |..+..+++|++|++++| .++.+++..+
T Consensus 94 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l 172 (477)
T 2id5_A 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEAL 172 (477)
T ss_dssp SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHH
T ss_pred ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHh
Confidence 8875 478999999999999999988788899999999999999999855 457889999999999998 7888888889
Q ss_pred ccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecC-CCCCCccc-cccccceeEEEecCCCCCCC
Q 039180 593 SSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKN-DSILPESF-LTQKLERFKISIGNESFMPS 670 (790)
Q Consensus 593 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~-~~~~L~~L~l~~~~~~~~~~ 670 (790)
.++++|+.|++++|.+.. .....+..+++|+.|++++|. ...++... ...+|+.|++++|.+...+.
T Consensus 173 ~~l~~L~~L~l~~n~i~~-----------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 241 (477)
T 2id5_A 173 SHLHGLIVLRLRHLNINA-----------IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY 241 (477)
T ss_dssp TTCTTCCEEEEESCCCCE-----------ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCH
T ss_pred cccCCCcEEeCCCCcCcE-----------eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCH
Confidence 999999999999998742 234467888999999999876 34444333 24589999999999887775
Q ss_pred -ccccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCCcccccchhHHHhccccccEEeeccCchhhhHhh
Q 039180 671 -QSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFELLRELSIADCRGLREIIS 749 (790)
Q Consensus 671 -~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 749 (790)
.+..+++|+.|++++|.++.+ ++..+..+++|+.|+|++| .+..+.+ ..+.++++|+.|++++| .++.++.
T Consensus 242 ~~~~~l~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~ 313 (477)
T 2id5_A 242 LAVRHLVYLRFLNLSYNPISTI-----EGSMLHELLRLQEIQLVGG-QLAVVEP-YAFRGLNYLRVLNVSGN-QLTTLEE 313 (477)
T ss_dssp HHHTTCTTCCEEECCSSCCCEE-----CTTSCTTCTTCCEEECCSS-CCSEECT-TTBTTCTTCCEEECCSS-CCSCCCG
T ss_pred HHhcCccccCeeECCCCcCCcc-----ChhhccccccCCEEECCCC-ccceECH-HHhcCcccCCEEECCCC-cCceeCH
Confidence 567889999999999988865 4556788999999999999 5666533 45778999999999997 4666554
Q ss_pred cCCCCCCCCcccCCccceeeccccc
Q 039180 750 KDRADHVTPCFVFPQMTTLRLEILP 774 (790)
Q Consensus 750 ~~~~~~~~~~~~~p~L~~L~l~~c~ 774 (790)
... ..+++|++|+|+++|
T Consensus 314 ~~~-------~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 314 SVF-------HSVGNLETLILDSNP 331 (477)
T ss_dssp GGB-------SCGGGCCEEECCSSC
T ss_pred hHc-------CCCcccCEEEccCCC
Confidence 322 248999999998765
No 7
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=7.1e-24 Score=226.39 Aligned_cols=293 Identities=18% Similarity=0.217 Sum_probs=141.0
Q ss_pred ccceeEEEeecccccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCCChhhhhccccceee
Q 039180 451 LKKYLAISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLPSSIYLLVNLQTLC 530 (790)
Q Consensus 451 ~~~l~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~ 530 (790)
.++++++++.++.+..++....++++++|.+.++ .+. .++. +.++++|++|++++|.+..+| .+..+++|++|+
T Consensus 43 l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n-~i~--~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGN-QIT--DISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSS-CCC--CCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEE
T ss_pred cccccEEEEeCCccccchhhhhcCCccEEEccCC-ccc--cchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEE
Confidence 3445555555555555544334444444444333 222 2333 345555555555555554443 345555555555
Q ss_pred ccCccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceecCCccccccccCchhhccccccceEecccCCccc
Q 039180 531 LDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEW 610 (790)
Q Consensus 531 L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 610 (790)
+++|.++.. +. +..+++|++|++++|.....+..+..+++|++|++++| .+..+++ +..+++|++|++++|.+..
T Consensus 117 l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~l~~ 191 (347)
T 4fmz_A 117 LNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIED 191 (347)
T ss_dssp CTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSCCCC
T ss_pred CcCCcccCc-hh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCcccc
Confidence 555555443 22 44555555555555532222222445555555555554 3333332 4445555555555544321
Q ss_pred hhhccc---------ccccccccccccCCCCCcEEEEEecCCCCCCccccccccceeEEEecCCCCCCCccccCCccCee
Q 039180 611 EVERAN---------SERSNSSLDELMNLPWLTTLEIDVKNDSILPESFLTQKLERFKISIGNESFMPSQSVELPNLEAL 681 (790)
Q Consensus 611 ~~~~~~---------~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 681 (790)
...... ....-.....+..+++|+.|++++|.+..++....+++|+.|++++|.+...+ .+..+++|+.|
T Consensus 192 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L 270 (347)
T 4fmz_A 192 ISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDIN-AVKDLTKLKML 270 (347)
T ss_dssp CGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEE
T ss_pred cccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCCh-hHhcCCCcCEE
Confidence 100000 00000001114555666666666666555555434566666666666555432 34456666666
Q ss_pred eccceecceecccCCCccccccCCCccEEeeccCCcccccchhHHHhccccccEEeeccCchhhhHhhcCCCCCCCCccc
Q 039180 682 ELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFELLRELSIADCRGLREIISKDRADHVTPCFV 761 (790)
Q Consensus 682 ~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 761 (790)
++++|.++++ + .+..+++|+.|++++|. +...+ +..+..+++|+.|++++|+ ++.++. . ..
T Consensus 271 ~l~~n~l~~~------~-~~~~l~~L~~L~L~~n~-l~~~~-~~~l~~l~~L~~L~L~~n~-l~~~~~-~--------~~ 331 (347)
T 4fmz_A 271 NVGSNQISDI------S-VLNNLSQLNSLFLNNNQ-LGNED-MEVIGGLTNLTTLFLSQNH-ITDIRP-L--------AS 331 (347)
T ss_dssp ECCSSCCCCC------G-GGGGCTTCSEEECCSSC-CCGGG-HHHHHTCTTCSEEECCSSS-CCCCGG-G--------GG
T ss_pred EccCCccCCC------h-hhcCCCCCCEEECcCCc-CCCcC-hhHhhccccCCEEEccCCc-cccccC-h--------hh
Confidence 6666655543 1 24556666666666663 33332 2345566666666666664 333332 1 23
Q ss_pred CCccceeeccccc
Q 039180 762 FPQMTTLRLEILP 774 (790)
Q Consensus 762 ~p~L~~L~l~~c~ 774 (790)
+|+|++|++++|+
T Consensus 332 l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 332 LSKMDSADFANQV 344 (347)
T ss_dssp CTTCSEESSSCC-
T ss_pred hhccceeehhhhc
Confidence 6666666666654
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=1.3e-23 Score=224.26 Aligned_cols=278 Identities=19% Similarity=0.178 Sum_probs=182.8
Q ss_pred cCCCcccccceeEEEeecccccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCCChhhhhc
Q 039180 444 EWPNPDALKKYLAISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLPSSIYLL 523 (790)
Q Consensus 444 ~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l 523 (790)
.++.-....+++.+++++|.+..++....++++++|.+.++ .+. .+|. +.++++|++|++++|.+..+|. +..+
T Consensus 58 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n-~i~--~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~~l 131 (347)
T 4fmz_A 58 SIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTN-KIT--DISA--LQNLTNLRELYLNEDNISDISP-LANL 131 (347)
T ss_dssp CCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCC--CCGG--GTTCTTCSEEECTTSCCCCCGG-GTTC
T ss_pred cchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCC-ccc--CchH--HcCCCcCCEEECcCCcccCchh-hccC
Confidence 33444456677777777777777766446666666666544 333 3432 5677777777777777766654 6666
Q ss_pred cccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceecCCccccccccCchhhccccccceEec
Q 039180 524 VNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYM 603 (790)
Q Consensus 524 ~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l 603 (790)
++|++|++++|..... +..+..+++|++|++++|.+..++. +..+++|++|++++| .+..+++ +..+++|+.|++
T Consensus 132 ~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l 206 (347)
T 4fmz_A 132 TKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYN-QIEDISP--LASLTSLHYFTA 206 (347)
T ss_dssp TTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTS-CCCCCGG--GGGCTTCCEEEC
T ss_pred CceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCC-ccccccc--ccCCCccceeec
Confidence 6777777776643322 3336666666666666666655544 555666666666665 3444432 344444444444
Q ss_pred ccCCccchhhccc---------ccccccccccccCCCCCcEEEEEecCCCCCCccccccccceeEEEecCCCCCCCcccc
Q 039180 604 GNCPIEWEVERAN---------SERSNSSLDELMNLPWLTTLEIDVKNDSILPESFLTQKLERFKISIGNESFMPSQSVE 674 (790)
Q Consensus 604 ~~~~~~~~~~~~~---------~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 674 (790)
++|.+........ ....-.....+..+++|+.|++++|.+..++....+++|+.|++++|.+...+ .+..
T Consensus 207 ~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~ 285 (347)
T 4fmz_A 207 YVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDIS-VLNN 285 (347)
T ss_dssp CSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGG
T ss_pred ccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCCh-hhcC
Confidence 4443322111000 00000011227889999999999999888876666899999999999887764 4678
Q ss_pred CCccCeeeccceecceecccCCCccccccCCCccEEeeccCCcccccchhHHHhccccccEEeeccCc
Q 039180 675 LPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFELLRELSIADCR 742 (790)
Q Consensus 675 l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~ 742 (790)
+++|+.|++++|.++.. .|..+..+++|+.|++++|+ ++.+++ +..+++|+.|++++|+
T Consensus 286 l~~L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 286 LSQLNSLFLNNNQLGNE-----DMEVIGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV 344 (347)
T ss_dssp CTTCSEEECCSSCCCGG-----GHHHHHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred CCCCCEEECcCCcCCCc-----ChhHhhccccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence 99999999999988753 46678899999999999995 666643 7889999999999985
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=3.8e-24 Score=250.68 Aligned_cols=274 Identities=15% Similarity=0.155 Sum_probs=173.4
Q ss_pred cccceeEEEeecccccC------------------CCCccC---ccccceeecccCCCCCCCCCChhhhccCCceEEEEe
Q 039180 450 ALKKYLAISLINSRIND------------------IPEGLE---SAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVAL 508 (790)
Q Consensus 450 ~~~~l~~l~l~~~~~~~------------------l~~~~~---~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L 508 (790)
...+++.+++++|.+.. +|..+. +++++.|.+.+++... .+|.. +.++++|+.|+|
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~--~iP~~-l~~L~~L~~L~L 522 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT--QLPDF-LYDLPELQSLNI 522 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC--SCCGG-GGGCSSCCEEEC
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc--cChHH-HhCCCCCCEEEC
Confidence 45688899999988877 887764 6677777666655444 57754 478889999999
Q ss_pred cCcc-ccC--CChhhhhcc-------ccceeeccCccccccchh--hhhccCcccEEeccCCCCcccchhhhccccccee
Q 039180 509 VKML-LSS--LPSSIYLLV-------NLQTLCLDQSILRDIDIA--IIGKLKNLKILSFVRSDIVQLPKALGELTKLRLS 576 (790)
Q Consensus 509 ~~~~-~~~--lp~~~~~l~-------~L~~L~L~~~~l~~l~p~--~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L 576 (790)
++|. ++. +|..++++. +|++|+|++|.++.+ |. .++++++|++|+|++|.++.+| .++.+++|++|
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~i-p~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L 600 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF-PASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDL 600 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBC-CCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCcc-CChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEE
Confidence 9887 764 788888777 899999999888865 77 8888888999999888888888 78888888888
Q ss_pred cCCccccccccCchhhccccc-cceEecccCCccchhhccc---------------cccccc---cccccc--CCCCCcE
Q 039180 577 DLTDCFHLKVIAPNVISSLTR-LEELYMGNCPIEWEVERAN---------------SERSNS---SLDELM--NLPWLTT 635 (790)
Q Consensus 577 ~l~~~~~l~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~---------------~~~~~~---~~~~l~--~l~~L~~ 635 (790)
++++| .+..+|.. +.++++ |+.|++++|.+. .++... +...+. .+..+. .+++|+.
T Consensus 601 ~Ls~N-~l~~lp~~-l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~ 677 (876)
T 4ecn_A 601 KLDYN-QIEEIPED-FCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST 677 (876)
T ss_dssp ECCSS-CCSCCCTT-SCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEE
T ss_pred ECcCC-ccccchHH-HhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCE
Confidence 88887 56677655 778888 888888888765 222110 000000 001111 2235666
Q ss_pred EEEEecCCCCCCcccc--ccccceeEEEecCCCCCCCccc--------cCCccCeeeccceecceecccCCCccccc--c
Q 039180 636 LEIDVKNDSILPESFL--TQKLERFKISIGNESFMPSQSV--------ELPNLEALELCAINVDKIWHYNLLPFMLS--R 703 (790)
Q Consensus 636 L~l~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~--------~l~~L~~L~l~~~~l~~l~~~~~~~~~~~--~ 703 (790)
|++++|.+..+|...+ +++|+.|++++|.+...+.... .+++|+.|+|++|.++.+ |..+. .
T Consensus 678 L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~l------p~~l~~~~ 751 (876)
T 4ecn_A 678 VTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL------SDDFRATT 751 (876)
T ss_dssp EECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCC------CGGGSTTT
T ss_pred EEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccc------hHHhhhcc
Confidence 6666666555555442 4556666666655554443111 122555566655555432 33333 5
Q ss_pred CCCccEEeeccCCcccccchhHHHhccccccEEeecc
Q 039180 704 FQSLTRLIVRSCPKLKYIFSASMIQNFELLRELSIAD 740 (790)
Q Consensus 704 l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 740 (790)
+++|+.|+|++| .+..+| ..+.++++|+.|++++
T Consensus 752 l~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 752 LPYLSNMDVSYN-CFSSFP--TQPLNSSQLKAFGIRH 785 (876)
T ss_dssp CTTCCEEECCSS-CCSSCC--CGGGGCTTCCEEECCC
T ss_pred CCCcCEEEeCCC-CCCccc--hhhhcCCCCCEEECCC
Confidence 555555555555 233332 2234555555555544
No 10
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=5.9e-24 Score=230.82 Aligned_cols=297 Identities=15% Similarity=0.098 Sum_probs=220.8
Q ss_pred ccccceeEEEeecccccCCCCcc--CccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCC-Chhhhhccc
Q 039180 449 DALKKYLAISLINSRINDIPEGL--ESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSL-PSSIYLLVN 525 (790)
Q Consensus 449 ~~~~~l~~l~l~~~~~~~l~~~~--~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~ 525 (790)
.....++.+++.++.+..+|... .++++++|.+.++. +. .++...|..+++|++|++++|.+..+ |..++.+++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~-i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IE--EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC-CC--EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCc-cc--ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 34678999999999999998754 56788887776554 44 47766778999999999999999877 556889999
Q ss_pred cceeeccCccccccchhhhhccCcccEEeccCCCCcccc-hhhhcccccceecCCccccccccCchhhccccccceEecc
Q 039180 526 LQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLP-KALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMG 604 (790)
Q Consensus 526 L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~ 604 (790)
|++|++++|.++.+.+..++++++|++|++++|.++.++ ..+..+++|++|++++| .++.++ ++.+++|+.|+++
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~---~~~l~~L~~L~l~ 194 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANVS 194 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCC---GGGCTTCSEEECC
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCccc---cccccccceeecc
Confidence 999999999999884445689999999999999988665 45888999999999998 566654 4567778888777
Q ss_pred cCCccchhhccc-------ccccccccccccCCCCCcEEEEEecCCCCCCccccccccceeEEEecCCCCCC-CccccCC
Q 039180 605 NCPIEWEVERAN-------SERSNSSLDELMNLPWLTTLEIDVKNDSILPESFLTQKLERFKISIGNESFMP-SQSVELP 676 (790)
Q Consensus 605 ~~~~~~~~~~~~-------~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~l~ 676 (790)
+|.+........ ...-...+ ....++|+.|++++|.+...+....+++|+.|++++|.+.... ..+..++
T Consensus 195 ~n~l~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (390)
T 3o6n_A 195 YNLLSTLAIPIAVEELDASHNSINVVR--GPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 272 (390)
T ss_dssp SSCCSEEECCSSCSEEECCSSCCCEEE--CCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred cccccccCCCCcceEEECCCCeeeecc--ccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccc
Confidence 776532110000 00000011 1224578888888888777765556788999999988877653 3667788
Q ss_pred ccCeeeccceecceecccCCCccccccCCCccEEeeccCCcccccchhHHHhccccccEEeeccCchhhhHhhcCCCCCC
Q 039180 677 NLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFELLRELSIADCRGLREIISKDRADHV 756 (790)
Q Consensus 677 ~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 756 (790)
+|+.|++++|.++.+ |.....+++|+.|++++| .+..++. .+..+++|+.|++++|. +..++ .
T Consensus 273 ~L~~L~L~~n~l~~~------~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~N~-i~~~~--~----- 335 (390)
T 3o6n_A 273 RLERLYISNNRLVAL------NLYGQPIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHNS-IVTLK--L----- 335 (390)
T ss_dssp SCCEEECCSSCCCEE------ECSSSCCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSSC-CCCCC--C-----
T ss_pred cCCEEECCCCcCccc------CcccCCCCCCCEEECCCC-cceecCc--cccccCcCCEEECCCCc-cceeC--c-----
Confidence 999999999988775 444577899999999999 5666643 46778999999999875 44443 1
Q ss_pred CCcccCCccceeeccccc
Q 039180 757 TPCFVFPQMTTLRLEILP 774 (790)
Q Consensus 757 ~~~~~~p~L~~L~l~~c~ 774 (790)
..+++|++|+++++|
T Consensus 336 ---~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 336 ---STHHTLKNLTLSHND 350 (390)
T ss_dssp ---CTTCCCSEEECCSSC
T ss_pred ---hhhccCCEEEcCCCC
Confidence 348999999998865
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=4e-24 Score=246.45 Aligned_cols=274 Identities=16% Similarity=0.187 Sum_probs=167.7
Q ss_pred cccceeEEEeecccccC------------------CCCccC---ccccceeecccCCCCCCCCCChhhhccCCceEEEEe
Q 039180 450 ALKKYLAISLINSRIND------------------IPEGLE---SAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVAL 508 (790)
Q Consensus 450 ~~~~l~~l~l~~~~~~~------------------l~~~~~---~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L 508 (790)
...+++.+++++|.+.. +|..+. ++++++|.+.++.... .+|.. +.++++|++|++
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~--~~p~~-l~~l~~L~~L~L 280 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT--KLPTF-LKALPEMQLINV 280 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS--SCCTT-TTTCSSCCEEEC
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc--cChHH-HhcCCCCCEEEC
Confidence 35677788888777766 777655 5566666555554433 46654 367778888888
Q ss_pred cCcc-cc--CCChhhhhc------cccceeeccCccccccchh--hhhccCcccEEeccCCCCc-ccchhhhccccccee
Q 039180 509 VKML-LS--SLPSSIYLL------VNLQTLCLDQSILRDIDIA--IIGKLKNLKILSFVRSDIV-QLPKALGELTKLRLS 576 (790)
Q Consensus 509 ~~~~-~~--~lp~~~~~l------~~L~~L~L~~~~l~~l~p~--~i~~l~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L 576 (790)
++|. ++ .+|..++.+ ++|++|++++|.++.+ |. .++++++|++|++++|.++ .+| .++.+++|++|
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~i-p~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L 358 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF-PVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASL 358 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSC-CCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEE
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCcc-CchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEE
Confidence 8776 66 367777776 7788888888777755 66 7777777888888777777 777 67777777777
Q ss_pred cCCccccccccCchhhccccc-cceEecccCCccchhhcc---------------ccccccccccccc-------CCCCC
Q 039180 577 DLTDCFHLKVIAPNVISSLTR-LEELYMGNCPIEWEVERA---------------NSERSNSSLDELM-------NLPWL 633 (790)
Q Consensus 577 ~l~~~~~l~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~---------------~~~~~~~~~~~l~-------~l~~L 633 (790)
++++| .+..+|.. ++++++ |++|++++|.+. .++.. .+...+..+..+. .+++|
T Consensus 359 ~L~~N-~l~~lp~~-l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L 435 (636)
T 4eco_A 359 NLAYN-QITEIPAN-FCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435 (636)
T ss_dssp ECCSS-EEEECCTT-SEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCE
T ss_pred ECCCC-ccccccHh-hhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCC
Confidence 77776 55566655 677777 777777777654 22210 0111122233344 45567
Q ss_pred cEEEEEecCCCCCCcccc--ccccceeEEEecCCCCCCCcc-cc-------CCccCeeeccceecceecccCCCccccc-
Q 039180 634 TTLEIDVKNDSILPESFL--TQKLERFKISIGNESFMPSQS-VE-------LPNLEALELCAINVDKIWHYNLLPFMLS- 702 (790)
Q Consensus 634 ~~L~l~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~-~~-------l~~L~~L~l~~~~l~~l~~~~~~~~~~~- 702 (790)
+.|++++|.+..+|...+ +++|+.|++++|.+...+... .. +++|+.|++++|.++.+ |..+.
T Consensus 436 ~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l------p~~~~~ 509 (636)
T 4eco_A 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL------SDDFRA 509 (636)
T ss_dssp EEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBC------CGGGST
T ss_pred CEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCcc------Chhhhh
Confidence 777777776666665443 466666666666665444421 11 12666666666655543 33333
Q ss_pred -cCCCccEEeeccCCcccccchhHHHhccccccEEeecc
Q 039180 703 -RFQSLTRLIVRSCPKLKYIFSASMIQNFELLRELSIAD 740 (790)
Q Consensus 703 -~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 740 (790)
.+++|+.|+|++| .++.+| ..+..+++|+.|++++
T Consensus 510 ~~l~~L~~L~Ls~N-~l~~ip--~~~~~l~~L~~L~Ls~ 545 (636)
T 4eco_A 510 TTLPYLVGIDLSYN-SFSKFP--TQPLNSSTLKGFGIRN 545 (636)
T ss_dssp TTCTTCCEEECCSS-CCSSCC--CGGGGCSSCCEEECCS
T ss_pred ccCCCcCEEECCCC-CCCCcC--hhhhcCCCCCEEECCC
Confidence 5666666666666 333342 2344556666666643
No 12
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=8.4e-24 Score=236.24 Aligned_cols=295 Identities=21% Similarity=0.249 Sum_probs=233.5
Q ss_pred eeEEEeecccccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCC-Chhhhhccccceeecc
Q 039180 454 YLAISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSL-PSSIYLLVNLQTLCLD 532 (790)
Q Consensus 454 l~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~ 532 (790)
-+.+..+++.+..+|..+. +.++.| .++++.+. .++...|.++++|++|+|++|.+..+ |..|.++++|++|+|+
T Consensus 13 ~~~v~c~~~~l~~ip~~~~-~~l~~L-~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIP-TETRLL-DLGKNRIK--TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TTEEECCSCCCSSCCSCCC-TTCSEE-ECCSSCCC--EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCcCCCCCC-CCCcEE-ECCCCccc--eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence 3567888888889987552 455555 44555555 57777789999999999999999876 8899999999999999
Q ss_pred CccccccchhhhhccCcccEEeccCCCCccc-chhhhcccccceecCCccccccccCchhhccccccceEecccCCccch
Q 039180 533 QSILRDIDIAIIGKLKNLKILSFVRSDIVQL-PKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWE 611 (790)
Q Consensus 533 ~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 611 (790)
+|.++.+.+..++++++|++|+|++|.+..+ |..+..+++|++|++++| .+..+++..+.++++|++|++++|.+.
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~-- 165 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNLT-- 165 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCCCS--
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCcCc--
Confidence 9999998566789999999999999999855 567899999999999998 677777777999999999999999874
Q ss_pred hhcccccccccccccccCCCCCcEEEEEecCCCCCCccc--cccccceeEEEecCCCC-CCCccccCCccCeeeccceec
Q 039180 612 VERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESF--LTQKLERFKISIGNESF-MPSQSVELPNLEALELCAINV 688 (790)
Q Consensus 612 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~l 688 (790)
......+..+++|+.|++++|.+..++... .+++|+.|++++|.... .+.......+|+.|++++|.+
T Consensus 166 ---------~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 236 (477)
T 2id5_A 166 ---------SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL 236 (477)
T ss_dssp ---------SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCC
T ss_pred ---------ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcc
Confidence 222446888999999999999877666533 37899999999976543 333344456999999999988
Q ss_pred ceecccCCCccccccCCCccEEeeccCCcccccchhHHHhccccccEEeeccCchhhhHhhcCCCCCCCCcccCCcccee
Q 039180 689 DKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFELLRELSIADCRGLREIISKDRADHVTPCFVFPQMTTL 768 (790)
Q Consensus 689 ~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~p~L~~L 768 (790)
+.+ ++..+..+++|+.|+|++|. ++.++. ..+.++++|+.|+++++. +..+..... ..+++|++|
T Consensus 237 ~~~-----~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~-------~~l~~L~~L 301 (477)
T 2id5_A 237 TAV-----PYLAVRHLVYLRFLNLSYNP-ISTIEG-SMLHELLRLQEIQLVGGQ-LAVVEPYAF-------RGLNYLRVL 301 (477)
T ss_dssp CSC-----CHHHHTTCTTCCEEECCSSC-CCEECT-TSCTTCTTCCEEECCSSC-CSEECTTTB-------TTCTTCCEE
T ss_pred ccc-----CHHHhcCccccCeeECCCCc-CCccCh-hhccccccCCEEECCCCc-cceECHHHh-------cCcccCCEE
Confidence 864 44568899999999999994 666643 457889999999999984 555433222 248999999
Q ss_pred eccccccccccC
Q 039180 769 RLEILPELKCYT 780 (790)
Q Consensus 769 ~l~~c~~L~~l~ 780 (790)
+|+++ +++.++
T Consensus 302 ~L~~N-~l~~~~ 312 (477)
T 2id5_A 302 NVSGN-QLTTLE 312 (477)
T ss_dssp ECCSS-CCSCCC
T ss_pred ECCCC-cCceeC
Confidence 99875 355444
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=7.9e-24 Score=242.64 Aligned_cols=296 Identities=15% Similarity=0.109 Sum_probs=213.2
Q ss_pred cccceeEEEeecccccCCCCcc--CccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCCC-hhhhhcccc
Q 039180 450 ALKKYLAISLINSRINDIPEGL--ESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLP-SSIYLLVNL 526 (790)
Q Consensus 450 ~~~~l~~l~l~~~~~~~l~~~~--~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp-~~~~~l~~L 526 (790)
....++.+++.++.+..+|+.. .++++++|.+.++. +. .+++..|..+++|++|+|++|.+..+| ..|+++++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~-l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IE--EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC-CC--EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC-CC--CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 4567788888888888888754 56777777665554 44 466666788888888998888888764 456888888
Q ss_pred ceeeccCccccccchhhhhccCcccEEeccCCCCcccch-hhhcccccceecCCccccccccCchhhccccccceEeccc
Q 039180 527 QTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPK-ALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGN 605 (790)
Q Consensus 527 ~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 605 (790)
++|+|++|.++.+++..++++++|++|+|++|.++.+|+ .++.+++|++|++++| .++.++ ++.+++|+.|++++
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~---~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANVSY 201 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCC---GGGCTTCSEEECCS
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcC---hhhhhhhhhhhccc
Confidence 899988888888745556888888899988888886554 5788888888888887 566654 45577777777777
Q ss_pred CCccchhhccc-------ccccccccccccCCCCCcEEEEEecCCCCCCccccccccceeEEEecCCCCCCC-ccccCCc
Q 039180 606 CPIEWEVERAN-------SERSNSSLDELMNLPWLTTLEIDVKNDSILPESFLTQKLERFKISIGNESFMPS-QSVELPN 677 (790)
Q Consensus 606 ~~~~~~~~~~~-------~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~ 677 (790)
|.+........ ...-...+. ...++|+.|++++|.+...+....+++|+.|++++|.+...++ .+..+++
T Consensus 202 n~l~~l~~~~~L~~L~ls~n~l~~~~~--~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 279 (597)
T 3oja_B 202 NLLSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 279 (597)
T ss_dssp SCCSEEECCTTCSEEECCSSCCCEEEC--SCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSS
T ss_pred CccccccCCchhheeeccCCccccccc--ccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccC
Confidence 76532110000 000000011 1135788888888887776555568889999999988876643 6778899
Q ss_pred cCeeeccceecceecccCCCccccccCCCccEEeeccCCcccccchhHHHhccccccEEeeccCchhhhHhhcCCCCCCC
Q 039180 678 LEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFELLRELSIADCRGLREIISKDRADHVT 757 (790)
Q Consensus 678 L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 757 (790)
|+.|+|++|.++.+ |..+..+++|+.|+|++| .+..+| ..+..+++|+.|++++|. +..++
T Consensus 280 L~~L~Ls~N~l~~l------~~~~~~l~~L~~L~Ls~N-~l~~i~--~~~~~l~~L~~L~L~~N~-l~~~~--------- 340 (597)
T 3oja_B 280 LERLYISNNRLVAL------NLYGQPIPTLKVLDLSHN-HLLHVE--RNQPQFDRLENLYLDHNS-IVTLK--------- 340 (597)
T ss_dssp CCEEECTTSCCCEE------ECSSSCCTTCCEEECCSS-CCCCCG--GGHHHHTTCSEEECCSSC-CCCCC---------
T ss_pred CCEEECCCCCCCCC------CcccccCCCCcEEECCCC-CCCccC--cccccCCCCCEEECCCCC-CCCcC---------
Confidence 99999999988765 455677899999999999 466664 346788999999999985 44432
Q ss_pred CcccCCccceeeccccc
Q 039180 758 PCFVFPQMTTLRLEILP 774 (790)
Q Consensus 758 ~~~~~p~L~~L~l~~c~ 774 (790)
...+|+|++|+|+++|
T Consensus 341 -~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 341 -LSTHHTLKNLTLSHND 356 (597)
T ss_dssp -CCTTCCCSEEECCSSC
T ss_pred -hhhcCCCCEEEeeCCC
Confidence 1358999999999876
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=9e-24 Score=247.47 Aligned_cols=306 Identities=17% Similarity=0.186 Sum_probs=239.0
Q ss_pred cccceeEEEeecccc-cCCCCcc-CccccceeecccCCCCCCCCCChhhh------ccCCceEEEEecCccccCCCh--h
Q 039180 450 ALKKYLAISLINSRI-NDIPEGL-ESAQLEFLLMIPNNSFLGPNIPENFF------KGVKKLRVVALVKMLLSSLPS--S 519 (790)
Q Consensus 450 ~~~~l~~l~l~~~~~-~~l~~~~-~~~~l~~l~~~~~~~~~~~~lp~~~~------~~l~~L~~L~L~~~~~~~lp~--~ 519 (790)
...+++.+.+++|.+ +.+|..+ .+++++.|.+.++..+.+..+|..+. ..+++|++|+|++|.+..+|. .
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~ 568 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS 568 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhh
Confidence 468899999999874 7788766 66778877776665355312666542 244599999999999999998 9
Q ss_pred hhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhhhcccc-cceecCCccccccccCchhhcccc--
Q 039180 520 IYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTK-LRLSDLTDCFHLKVIAPNVISSLT-- 596 (790)
Q Consensus 520 ~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~-L~~L~l~~~~~l~~~~~~~l~~l~-- 596 (790)
++++++|++|+|++|.++.+ | .++++++|++|+|++|.++.+|..+..+++ |++|++++| .+..+|.. +..++
T Consensus 569 l~~L~~L~~L~Ls~N~l~~l-p-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N-~L~~lp~~-~~~~~~~ 644 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVRHL-E-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNI-FNAKSVY 644 (876)
T ss_dssp HTTCTTCCEEECTTSCCCBC-C-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSS-CCCSCCSC-CCTTCSS
T ss_pred hhcCCCCCEEECCCCCcccc-h-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCC-CCCcCchh-hhccccC
Confidence 99999999999999999966 7 899999999999999999999999999999 999999998 57777754 56554
Q ss_pred ccceEecccCCccchhhccc------------------cccccccccc-ccCCCCCcEEEEEecCCCCCCcccc------
Q 039180 597 RLEELYMGNCPIEWEVERAN------------------SERSNSSLDE-LMNLPWLTTLEIDVKNDSILPESFL------ 651 (790)
Q Consensus 597 ~L~~L~l~~~~~~~~~~~~~------------------~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~------ 651 (790)
+|+.|++++|.+...++... +... ..+.. +..+++|+.|++++|.+..+|...+
T Consensus 645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~ 723 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723 (876)
T ss_dssp CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSC
T ss_pred CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhcccccc
Confidence 48899998888754332110 1111 23333 3478999999999999888887654
Q ss_pred ---ccccceeEEEecCCCCCCCccc--cCCccCeeeccceecceecccCCCccccccCCCccEEeeccCC------cccc
Q 039180 652 ---TQKLERFKISIGNESFMPSQSV--ELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCP------KLKY 720 (790)
Q Consensus 652 ---~~~L~~L~l~~~~~~~~~~~~~--~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~------~l~~ 720 (790)
+++|+.|+|++|.+..++..+. .+++|+.|+|++|.++.+ |..+..+++|+.|+|++|+ ....
T Consensus 724 l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~l------p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ 797 (876)
T 4ecn_A 724 YKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF------PTQPLNSSQLKAFGIRHQRDAEGNRILRQ 797 (876)
T ss_dssp CTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSC------CCGGGGCTTCCEEECCCCBCTTCCBCCCC
T ss_pred ccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCcc------chhhhcCCCCCEEECCCCCCccccccccc
Confidence 2389999999999998887665 899999999999998854 6678899999999998743 3334
Q ss_pred cchhHHHhccccccEEeeccCchhhhHhhcCCCCCCCCcccCCccceeeccccccccccC
Q 039180 721 IFSASMIQNFELLRELSIADCRGLREIISKDRADHVTPCFVFPQMTTLRLEILPELKCYT 780 (790)
Q Consensus 721 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~l~ 780 (790)
+ +..+.++++|+.|++++|. +..++.. .+|+|+.|+|++|| +.++.
T Consensus 798 i--p~~l~~L~~L~~L~Ls~N~-L~~Ip~~----------l~~~L~~LdLs~N~-l~~i~ 843 (876)
T 4ecn_A 798 W--PTGITTCPSLIQLQIGSND-IRKVDEK----------LTPQLYILDIADNP-NISID 843 (876)
T ss_dssp C--CTTGGGCSSCCEEECCSSC-CCBCCSC----------CCSSSCEEECCSCT-TCEEE
T ss_pred C--hHHHhcCCCCCEEECCCCC-CCccCHh----------hcCCCCEEECCCCC-CCccC
Confidence 4 2457889999999999985 4666542 25899999999998 55554
No 15
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=9.8e-23 Score=226.50 Aligned_cols=220 Identities=23% Similarity=0.282 Sum_probs=117.9
Q ss_pred CCCcccccceeEEEeecccccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCCChhhhhcc
Q 039180 445 WPNPDALKKYLAISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLPSSIYLLV 524 (790)
Q Consensus 445 ~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~ 524 (790)
++......+++.+++++|.+..+++...+++++.|.+.++ .+. .++. +.++++|++|++++|.+..+|. +..++
T Consensus 61 l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n-~l~--~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~ 134 (466)
T 1o6v_A 61 IDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN-QIA--DITP--LANLTNLTGLTLFNNQITDIDP-LKNLT 134 (466)
T ss_dssp CTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCC--CCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCT
T ss_pred CcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCC-ccc--cChh--hcCCCCCCEEECCCCCCCCChH-HcCCC
Confidence 3444455677777777777777766445566666655443 333 3444 5677777777777777766654 66777
Q ss_pred ccceeeccCccccccchh--------------------hhhccCcccEEeccCCCCcccchhhhcccccceecCCccccc
Q 039180 525 NLQTLCLDQSILRDIDIA--------------------IIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSDLTDCFHL 584 (790)
Q Consensus 525 ~L~~L~L~~~~l~~l~p~--------------------~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~l 584 (790)
+|++|++++|.+..+ +. .++++++|++|++++|.++.++. +..+++|++|++++| .+
T Consensus 135 ~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l 211 (466)
T 1o6v_A 135 NLNRLELSSNTISDI-SALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNN-QI 211 (466)
T ss_dssp TCSEEEEEEEEECCC-GGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSS-CC
T ss_pred CCCEEECCCCccCCC-hhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCC-cc
Confidence 777777777766553 21 13444555555555555554432 555555555555555 33
Q ss_pred cccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCccccccccceeEEEecC
Q 039180 585 KVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFLTQKLERFKISIGN 664 (790)
Q Consensus 585 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 664 (790)
..+++ ++.+++|++|++++|.+.. ...+..+++|+.|++++|.+...+....+++|+.|++++|.
T Consensus 212 ~~~~~--~~~l~~L~~L~l~~n~l~~-------------~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~ 276 (466)
T 1o6v_A 212 SDITP--LGILTNLDELSLNGNQLKD-------------IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ 276 (466)
T ss_dssp CCCGG--GGGCTTCCEEECCSSCCCC-------------CGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC
T ss_pred ccccc--ccccCCCCEEECCCCCccc-------------chhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCc
Confidence 33333 4455555555555554421 12334445555555555544444433334445555555444
Q ss_pred CCCCCCccccCCccCeeeccceecc
Q 039180 665 ESFMPSQSVELPNLEALELCAINVD 689 (790)
Q Consensus 665 ~~~~~~~~~~l~~L~~L~l~~~~l~ 689 (790)
+...+. +..+++|+.|++++|.++
T Consensus 277 l~~~~~-~~~l~~L~~L~L~~n~l~ 300 (466)
T 1o6v_A 277 ISNISP-LAGLTALTNLELNENQLE 300 (466)
T ss_dssp CCCCGG-GTTCTTCSEEECCSSCCS
T ss_pred cCcccc-ccCCCccCeEEcCCCccc
Confidence 443332 333444444444444443
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=3.8e-23 Score=238.38 Aligned_cols=168 Identities=22% Similarity=0.277 Sum_probs=130.2
Q ss_pred eEecCCccccCCCcccccceeEEEeecccccCCCC-cc-CccccceeecccCCCCCCCCCChhhhccCCceEEEEecCcc
Q 039180 435 FVVRNKNMWEWPNPDALKKYLAISLINSRINDIPE-GL-ESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKML 512 (790)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~-~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~ 512 (790)
+.+.+..+..+|. ..+.+++.+++++|.+..+++ .+ .++++++|.+.++ .+. .+++..|.++++|++|++++|.
T Consensus 16 ~~c~~~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~--~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 16 YQCMDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIE--TIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp EECTTSCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCC--EECTTTTTTCTTCCEEECTTCC
T ss_pred eEccCCCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-ccc--ccCHHHhhchhhcCEeECCCCc
Confidence 3344445555554 456899999999999988776 33 6777887776655 444 4766677899999999999999
Q ss_pred ccCC-ChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCc--ccchhhhcccccceecCCccccccccCc
Q 039180 513 LSSL-PSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIV--QLPKALGELTKLRLSDLTDCFHLKVIAP 589 (790)
Q Consensus 513 ~~~l-p~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~--~lp~~l~~l~~L~~L~l~~~~~l~~~~~ 589 (790)
+..+ |..|+++++|++|++++|.++.+.+..++++++|++|++++|.++ .+|..++++++|++|++++| .+..+++
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~ 170 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITV 170 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEECT
T ss_pred ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecCh
Confidence 9877 888999999999999999998886688999999999999999887 57899999999999999998 5666655
Q ss_pred hhhccccccc----eEecccCC
Q 039180 590 NVISSLTRLE----ELYMGNCP 607 (790)
Q Consensus 590 ~~l~~l~~L~----~L~l~~~~ 607 (790)
..++.+++|+ +|++++|.
T Consensus 171 ~~~~~l~~L~~~l~~L~l~~n~ 192 (606)
T 3vq2_A 171 NDLQFLRENPQVNLSLDMSLNP 192 (606)
T ss_dssp TTTHHHHHCTTCCCEEECTTCC
T ss_pred hhhhhhhccccccceeeccCCC
Confidence 5455554433 44444443
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=1.6e-23 Score=239.84 Aligned_cols=168 Identities=20% Similarity=0.261 Sum_probs=134.6
Q ss_pred ecCCccccCCCcccccceeEEEeecccccCCCC-c-cCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCcccc
Q 039180 437 VRNKNMWEWPNPDALKKYLAISLINSRINDIPE-G-LESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLS 514 (790)
Q Consensus 437 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~-~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~ 514 (790)
+.+..+..+|. ..+..++++++++|.+..+++ . ..++++++|.+.++. +. .+++..|.++++|++|++++|.+.
T Consensus 14 c~~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~--~i~~~~~~~l~~L~~L~L~~n~l~ 89 (570)
T 2z63_A 14 CMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQ--TIEDGAYQSLSHLSTLILTGNPIQ 89 (570)
T ss_dssp CCSSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC-CC--EECTTTTTTCTTCCEEECTTCCCC
T ss_pred eCCCCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCc-CC--ccCcccccCchhCCEEeCcCCcCC
Confidence 33344555554 456789999999999987764 2 367788888776654 44 577777899999999999999998
Q ss_pred CC-ChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcc--cchhhhcccccceecCCccccccccCchh
Q 039180 515 SL-PSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQ--LPKALGELTKLRLSDLTDCFHLKVIAPNV 591 (790)
Q Consensus 515 ~l-p~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~--lp~~l~~l~~L~~L~l~~~~~l~~~~~~~ 591 (790)
.+ |..|+.+++|++|++++|.++.+.+..++++++|++|++++|.++. +|..++++++|++|++++| .+..+++..
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~ 168 (570)
T 2z63_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTD 168 (570)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGG
T ss_pred ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHH
Confidence 76 4789999999999999999998845579999999999999998884 7899999999999999998 677776666
Q ss_pred hcccccc----ceEecccCCcc
Q 039180 592 ISSLTRL----EELYMGNCPIE 609 (790)
Q Consensus 592 l~~l~~L----~~L~l~~~~~~ 609 (790)
++.+++| +.|++++|.+.
T Consensus 169 ~~~l~~L~~~~~~L~l~~n~l~ 190 (570)
T 2z63_A 169 LRVLHQMPLLNLSLDLSLNPMN 190 (570)
T ss_dssp GHHHHTCTTCCCEEECTTCCCC
T ss_pred ccchhccchhhhhcccCCCCce
Confidence 7777777 77777777654
No 18
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=2.5e-23 Score=229.33 Aligned_cols=207 Identities=17% Similarity=0.129 Sum_probs=134.0
Q ss_pred ccceeEEEeecccccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCCChhhhhccccceee
Q 039180 451 LKKYLAISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLPSSIYLLVNLQTLC 530 (790)
Q Consensus 451 ~~~l~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~ 530 (790)
..+++.+++++|.+..+|....++++++|.+.++ .+. .+| +..+++|++|++++|.++.+| ++.+++|++|+
T Consensus 41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n-~l~--~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSN-NIT--TLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN 112 (457)
T ss_dssp HTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSS-CCS--CCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCCcccChhhcccCCCCEEEccCC-cCC--eEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence 4677788888887777775445666666655544 344 344 467778888888888777765 77778888888
Q ss_pred ccCccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceecCCccccccccCchhhccccccceEecccCCccc
Q 039180 531 LDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEW 610 (790)
Q Consensus 531 L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 610 (790)
+++|.++++ | ++.+++|++|++++|.++.+| ++.+++|++|++++|..++.++ ++.+++|++|++++|.+..
T Consensus 113 L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 113 CDTNKLTKL-D--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp CCSSCCSCC-C--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC
T ss_pred CCCCcCCee-c--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce
Confidence 888887775 4 777788888888888777764 6777777777777775555552 5667777777777776531
Q ss_pred hhhcccccccccccccccCCCCCcEEEEEecCCCCCCccccccccceeEEEecCCCCCCCccccCCccCeeeccceecce
Q 039180 611 EVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFLTQKLERFKISIGNESFMPSQSVELPNLEALELCAINVDK 690 (790)
Q Consensus 611 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~ 690 (790)
.+ ++.+++|+.|++++|.+..++ ...+++|+.|++++|.+...+ +..+++|+.|++++|.++.
T Consensus 185 ------------l~--l~~l~~L~~L~l~~N~l~~~~-l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 185 ------------LD--VSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp ------------CC--CTTCTTCCEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC
T ss_pred ------------ec--cccCCCCCEEECcCCcCCeec-cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCC
Confidence 11 445555666666555554442 223455555555555555543 3445555555555555543
No 19
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=4.3e-23 Score=218.70 Aligned_cols=270 Identities=18% Similarity=0.202 Sum_probs=196.0
Q ss_pred ccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCC-ChhhhhccccceeeccCccccccchhhhhccCcccEE
Q 039180 475 QLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSL-PSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKIL 553 (790)
Q Consensus 475 ~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L 553 (790)
+++.+... ++.+. .+|..+ .++|++|++++|.+..+ |..+.++++|++|++++|.++.+.|..++++++|++|
T Consensus 34 ~l~~l~~~-~~~l~--~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 34 HLRVVQCS-DLGLK--AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp ETTEEECC-SSCCS--SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred cCCEEECC-CCCcc--ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence 34444333 33333 466644 36788888888888876 4578888888999998888888777888888889999
Q ss_pred eccCCCCcccchhhhcccccceecCCccccccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCC
Q 039180 554 SFVRSDIVQLPKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWL 633 (790)
Q Consensus 554 ~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 633 (790)
++++|.++.+|..+. ++|++|++++| .++.+++..++++++|++|++++|.+.. .+..+..+..+ +|
T Consensus 108 ~L~~n~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~---------~~~~~~~~~~l-~L 174 (332)
T 2ft3_A 108 YISKNHLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLEN---------SGFEPGAFDGL-KL 174 (332)
T ss_dssp ECCSSCCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBG---------GGSCTTSSCSC-CC
T ss_pred ECCCCcCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCcccc---------CCCCcccccCC-cc
Confidence 998888888887665 78888888887 6777777778888888999888887641 11234455556 78
Q ss_pred cEEEEEecCCCCCCccccccccceeEEEecCCCCCCC-ccccCCccCeeeccceecceecccCCCccccccCCCccEEee
Q 039180 634 TTLEIDVKNDSILPESFLTQKLERFKISIGNESFMPS-QSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIV 712 (790)
Q Consensus 634 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L 712 (790)
+.|++++|.+..+|.... ++|+.|++++|.+...+. .+..+++|+.|++++|.++.+ ++..+..+++|+.|++
T Consensus 175 ~~L~l~~n~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~-----~~~~~~~l~~L~~L~L 248 (332)
T 2ft3_A 175 NYLRISEAKLTGIPKDLP-ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI-----ENGSLSFLPTLRELHL 248 (332)
T ss_dssp SCCBCCSSBCSSCCSSSC-SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC-----CTTGGGGCTTCCEEEC
T ss_pred CEEECcCCCCCccCcccc-CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC-----ChhHhhCCCCCCEEEC
Confidence 888888888877776643 788888888888777664 667788888888888887754 4556778888888888
Q ss_pred ccCCcccccchhHHHhccccccEEeeccCchhhhHhhcCCCCCCCCcccCCccceeeccccc
Q 039180 713 RSCPKLKYIFSASMIQNFELLRELSIADCRGLREIISKDRADHVTPCFVFPQMTTLRLEILP 774 (790)
Q Consensus 713 ~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~ 774 (790)
++| .++.+|. .+..+++|+.|+++++ .++.++...... ......+++|+.|++.++|
T Consensus 249 ~~N-~l~~lp~--~l~~l~~L~~L~l~~N-~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 249 DNN-KLSRVPA--GLPDLKLLQVVYLHTN-NITKVGVNDFCP-VGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp CSS-CCCBCCT--TGGGCTTCCEEECCSS-CCCBCCTTSSSC-SSCCSSSCCBSEEECCSSS
T ss_pred CCC-cCeecCh--hhhcCccCCEEECCCC-CCCccChhHccc-cccccccccccceEeecCc
Confidence 888 5666643 4678888888888886 455554432210 0011225778888888776
No 20
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=1e-22 Score=226.35 Aligned_cols=268 Identities=21% Similarity=0.220 Sum_probs=183.7
Q ss_pred cccceeEEEeecccccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCCChhhhhcccccee
Q 039180 450 ALKKYLAISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLPSSIYLLVNLQTL 529 (790)
Q Consensus 450 ~~~~l~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L 529 (790)
...+++.+++.++.+..+|....++++++|.+.++ .+. .+|+ +.++++|++|++++|.+..++. ++++++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n-~l~--~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNN-QLT--DITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSS-CCC--CCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred HhccccEEecCCCCCccCcchhhhcCCCEEECCCC-ccC--Cchh--hhccccCCEEECCCCccccChh-hcCCCCCCEE
Confidence 45789999999999999987667788888877655 444 4665 6899999999999999998876 9999999999
Q ss_pred eccCccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceecCCccccccccCchhhccccccceEecccCCcc
Q 039180 530 CLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIE 609 (790)
Q Consensus 530 ~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 609 (790)
++++|.++.+ +. ++++++|++|++++|.+..+|. +..+++|++|++++ .+..+++ ++++++|++|++++|.+.
T Consensus 118 ~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~--~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 118 TLFNNQITDI-DP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGN--QVTDLKP--LANLTTLERLDISSNKVS 190 (466)
T ss_dssp ECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEE--SCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCC-hH-HcCCCCCCEEECCCCccCCChh-hccCCcccEeecCC--cccCchh--hccCCCCCEEECcCCcCC
Confidence 9999999997 44 8999999999999998887664 56666666655542 2223322 455555555555555432
Q ss_pred chhhccc---------ccccccccccccCCCCCcEEEEEecCCCCCCccccccccceeEEEecCCCCCCCccccCCccCe
Q 039180 610 WEVERAN---------SERSNSSLDELMNLPWLTTLEIDVKNDSILPESFLTQKLERFKISIGNESFMPSQSVELPNLEA 680 (790)
Q Consensus 610 ~~~~~~~---------~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 680 (790)
....... ....-.....++.+++|+.|++++|.+..++....+++|+.|++++|.+...+. +..+++|+.
T Consensus 191 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~ 269 (466)
T 1o6v_A 191 DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTE 269 (466)
T ss_dssp CCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSE
T ss_pred CChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh-hhcCCCCCE
Confidence 1100000 000000011255567777777777776666555456778888887777665544 566788888
Q ss_pred eeccceecceecccCCCccccccCCCccEEeeccCCcccccchhHHHhccccccEEeeccCc
Q 039180 681 LELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFELLRELSIADCR 742 (790)
Q Consensus 681 L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~ 742 (790)
|++++|.++.+ ++ +..+++|+.|++++| .+..++. +..+++|+.|++++|.
T Consensus 270 L~l~~n~l~~~-----~~--~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 270 LKLGANQISNI-----SP--LAGLTALTNLELNEN-QLEDISP---ISNLKNLTYLTLYFNN 320 (466)
T ss_dssp EECCSSCCCCC-----GG--GTTCTTCSEEECCSS-CCSCCGG---GGGCTTCSEEECCSSC
T ss_pred EECCCCccCcc-----cc--ccCCCccCeEEcCCC-cccCchh---hcCCCCCCEEECcCCc
Confidence 88888877653 22 566777777777777 4555432 5567777777777763
No 21
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=3.2e-23 Score=218.51 Aligned_cols=222 Identities=23% Similarity=0.330 Sum_probs=152.4
Q ss_pred cCCceEEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceecC
Q 039180 499 GVKKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSDL 578 (790)
Q Consensus 499 ~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l 578 (790)
..++++.|+|++|.++.+|..++++++|++|+|++|.++.+ |..++++++|++|+|++|.++.+|..++++++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMEL-PDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCC-CSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccch-hHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 45789999999999999999999999999999999999866 88899999999999999999999999999999999999
Q ss_pred CccccccccCchhhc---------cccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCcc
Q 039180 579 TDCFHLKVIAPNVIS---------SLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPES 649 (790)
Q Consensus 579 ~~~~~l~~~~~~~l~---------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 649 (790)
++|..++.+|.. ++ ++++|++|++++|.+. ..+..++.+++|+.|++++|.+..+|.
T Consensus 158 ~~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~------------~lp~~l~~l~~L~~L~L~~N~l~~l~~- 223 (328)
T 4fcg_A 158 RACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIR------------SLPASIANLQNLKSLKIRNSPLSALGP- 223 (328)
T ss_dssp EEETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCC------------CCCGGGGGCTTCCEEEEESSCCCCCCG-
T ss_pred CCCCCccccChh-HhhccchhhhccCCCCCEEECcCCCcC------------cchHhhcCCCCCCEEEccCCCCCcCch-
Confidence 998777777654 33 2555555555555442 123344555555555555555444443
Q ss_pred ccccccceeEEEecCCCCCCCccccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCCcccccchhHHHhc
Q 039180 650 FLTQKLERFKISIGNESFMPSQSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQN 729 (790)
Q Consensus 650 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 729 (790)
.+..+++|+.|++++|.+... .|..++.+++|+.|+|++|..+..+|. .+.+
T Consensus 224 ---------------------~l~~l~~L~~L~Ls~n~~~~~-----~p~~~~~l~~L~~L~L~~n~~~~~~p~--~~~~ 275 (328)
T 4fcg_A 224 ---------------------AIHHLPKLEELDLRGCTALRN-----YPPIFGGRAPLKRLILKDCSNLLTLPL--DIHR 275 (328)
T ss_dssp ---------------------GGGGCTTCCEEECTTCTTCCB-----CCCCTTCCCCCCEEECTTCTTCCBCCT--TGGG
T ss_pred ---------------------hhccCCCCCEEECcCCcchhh-----hHHHhcCCCCCCEEECCCCCchhhcch--hhhc
Confidence 344556666666666644321 344556666666666666655555532 3556
Q ss_pred cccccEEeeccCchhhhHhhcCCCCCCCCcccCCccceeecc
Q 039180 730 FELLRELSIADCRGLREIISKDRADHVTPCFVFPQMTTLRLE 771 (790)
Q Consensus 730 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~ 771 (790)
+++|+.|++++|+.++.++..... +++|+.+.+.
T Consensus 276 l~~L~~L~L~~n~~~~~iP~~l~~--------L~~L~~l~l~ 309 (328)
T 4fcg_A 276 LTQLEKLDLRGCVNLSRLPSLIAQ--------LPANCIILVP 309 (328)
T ss_dssp CTTCCEEECTTCTTCCCCCGGGGG--------SCTTCEEECC
T ss_pred CCCCCEEeCCCCCchhhccHHHhh--------ccCceEEeCC
Confidence 666666666666655555554333 5666666554
No 22
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=8.8e-23 Score=216.14 Aligned_cols=251 Identities=16% Similarity=0.179 Sum_probs=167.6
Q ss_pred CceEEEEecCccccCCCh-hhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceecCC
Q 039180 501 KKLRVVALVKMLLSSLPS-SIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSDLT 579 (790)
Q Consensus 501 ~~L~~L~L~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~ 579 (790)
+.|++|++++|.++.+|. .+.++++|++|+|++|.++.+.|..++.+++|++|++++|.++.+|..+. ++|++|+++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECC
Confidence 567777777777776644 67777777777777777777667777777777777777777777776554 677777777
Q ss_pred ccccccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCccccccccceeE
Q 039180 580 DCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFLTQKLERFK 659 (790)
Q Consensus 580 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~ 659 (790)
+| .++.+++..+.++++|++|++++|.+.. .+..+..+..+++|+.|++++|.+..+|.... ++|+.|+
T Consensus 130 ~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~-~~L~~L~ 198 (330)
T 1xku_A 130 EN-EITKVRKSVFNGLNQMIVVELGTNPLKS---------SGIENGAFQGMKKLSYIRIADTNITTIPQGLP-PSLTELH 198 (330)
T ss_dssp SS-CCCBBCHHHHTTCTTCCEEECCSSCCCG---------GGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC-TTCSEEE
T ss_pred CC-cccccCHhHhcCCccccEEECCCCcCCc---------cCcChhhccCCCCcCEEECCCCccccCCcccc-ccCCEEE
Confidence 76 5666666667777777777777776531 11234456677777777777777776666543 6777777
Q ss_pred EEecCCCCCCC-ccccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCCcccccchhHHHhccccccEEee
Q 039180 660 ISIGNESFMPS-QSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFELLRELSI 738 (790)
Q Consensus 660 l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l 738 (790)
+++|.+...+. .+..+++|+.|++++|.++.+ ++..+..+++|+.|++++| .++.++. .+..+++|+.|++
T Consensus 199 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L~~N-~l~~lp~--~l~~l~~L~~L~l 270 (330)
T 1xku_A 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAV-----DNGSLANTPHLRELHLNNN-KLVKVPG--GLADHKYIQVVYL 270 (330)
T ss_dssp CTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE-----CTTTGGGSTTCCEEECCSS-CCSSCCT--TTTTCSSCCEEEC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCcee-----ChhhccCCCCCCEEECCCC-cCccCCh--hhccCCCcCEEEC
Confidence 77777665533 566677788888887777654 3445667777888888877 4555532 3567777888888
Q ss_pred ccCchhhhHhhcCCCCCCCCcccCCccceeeccccc
Q 039180 739 ADCRGLREIISKDRADHVTPCFVFPQMTTLRLEILP 774 (790)
Q Consensus 739 ~~c~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~ 774 (790)
++| .++.++...... ......++.|+.|++.+.|
T Consensus 271 ~~N-~i~~~~~~~f~~-~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 271 HNN-NISAIGSNDFCP-PGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp CSS-CCCCCCTTSSSC-SSCCTTSCCCSEEECCSSS
T ss_pred CCC-cCCccChhhcCC-cccccccccccceEeecCc
Confidence 776 355554432210 0011224667777777655
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=3e-23 Score=230.39 Aligned_cols=305 Identities=18% Similarity=0.217 Sum_probs=223.2
Q ss_pred eEEEeecccccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCcccc-CC-Chhhhhccccceeecc
Q 039180 455 LAISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLS-SL-PSSIYLLVNLQTLCLD 532 (790)
Q Consensus 455 ~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~-~l-p~~~~~l~~L~~L~L~ 532 (790)
+.+...++.+..+|. -.+++++|.+.+ +.+. .+++..|.++++|++|++++|.+. .+ |..|..+++|++|+|+
T Consensus 13 ~~~~c~~~~l~~lp~--l~~~l~~L~Ls~-n~i~--~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLHQVPE--LPAHVNYVDLSL-NSIA--ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCSSCCC--CCTTCCEEECCS-SCCC--EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcccCCC--CCCccCEEEecC-CccC--cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 457777888889987 235666666554 4555 465566789999999999999886 45 6779999999999999
Q ss_pred CccccccchhhhhccCcccEEeccCCCCcc-cchh--hhcccccceecCCccccccccCc-hhhccccccceEecccCCc
Q 039180 533 QSILRDIDIAIIGKLKNLKILSFVRSDIVQ-LPKA--LGELTKLRLSDLTDCFHLKVIAP-NVISSLTRLEELYMGNCPI 608 (790)
Q Consensus 533 ~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~-lp~~--l~~l~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~ 608 (790)
+|.++...|..++++++|++|++++|.++. +|.. +..+++|++|++++| .+..+++ ..++++++|++|++++|.+
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCcc
Confidence 999998888999999999999999999984 4554 889999999999998 5666644 4488999999999999987
Q ss_pred cchhhcccccc---------------cc--------cccccccCCCCCcEEEEEecCCCCC-Ccc---------------
Q 039180 609 EWEVERANSER---------------SN--------SSLDELMNLPWLTTLEIDVKNDSIL-PES--------------- 649 (790)
Q Consensus 609 ~~~~~~~~~~~---------------~~--------~~~~~l~~l~~L~~L~l~~~~~~~~-~~~--------------- 649 (790)
....+..-... .. .....+..+++|+.|++++|.+... +..
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 54322100000 00 0001122446677777777654311 000
Q ss_pred -------------------------ccccccceeEEEecCCCCCCC-ccccCCccCeeeccceecceecccCCCcccccc
Q 039180 650 -------------------------FLTQKLERFKISIGNESFMPS-QSVELPNLEALELCAINVDKIWHYNLLPFMLSR 703 (790)
Q Consensus 650 -------------------------~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~ 703 (790)
...++|+.|++++|.+..... .+..+++|+.|++++|.++.+ +|..+..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----~~~~~~~ 321 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI-----DDNAFWG 321 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE-----CTTTTTT
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc-----ChhHhcC
Confidence 012578888888888776544 677889999999999988865 4666888
Q ss_pred CCCccEEeeccCCcccccchhHHHhccccccEEeeccCchhhhHhhcCCCCCCCCcccCCccceeeccccccccccCh
Q 039180 704 FQSLTRLIVRSCPKLKYIFSASMIQNFELLRELSIADCRGLREIISKDRADHVTPCFVFPQMTTLRLEILPELKCYTL 781 (790)
Q Consensus 704 l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~l~~ 781 (790)
+++|+.|+|++| .++.+++ ..+.++++|+.|++++|. +..++.... ..+|+|++|+++++. ++.++-
T Consensus 322 l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-------~~l~~L~~L~L~~N~-l~~~~~ 388 (455)
T 3v47_A 322 LTHLLKLNLSQN-FLGSIDS-RMFENLDKLEVLDLSYNH-IRALGDQSF-------LGLPNLKELALDTNQ-LKSVPD 388 (455)
T ss_dssp CTTCCEEECCSS-CCCEECG-GGGTTCTTCCEEECCSSC-CCEECTTTT-------TTCTTCCEEECCSSC-CSCCCT
T ss_pred cccCCEEECCCC-ccCCcCh-hHhcCcccCCEEECCCCc-ccccChhhc-------cccccccEEECCCCc-cccCCH
Confidence 999999999999 5666643 457889999999999984 555533222 248999999998853 666553
No 24
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=4.9e-23 Score=237.48 Aligned_cols=294 Identities=17% Similarity=0.155 Sum_probs=197.5
Q ss_pred cCCccccCCCcccccceeEEEeecccccCCCC-cc-CccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccC
Q 039180 438 RNKNMWEWPNPDALKKYLAISLINSRINDIPE-GL-ESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSS 515 (790)
Q Consensus 438 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~-~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~ 515 (790)
.+..+..+| ...+..++++++++|.+..+++ .+ .++++++|.+.++. +. .+++..|.++++|++|++++|.+..
T Consensus 20 ~~~~l~~iP-~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~--~~~~~~~~~l~~L~~L~Ls~n~l~~ 95 (606)
T 3t6q_A 20 ENLGLNEIP-GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ-IY--WIHEDTFQSQHRLDTLVLTANPLIF 95 (606)
T ss_dssp TTSCCSSCC-TTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCC-CC--EECTTTTTTCTTCCEEECTTCCCSE
T ss_pred CCCCcccCc-CCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCc-cc--eeChhhccCccccCeeeCCCCcccc
Confidence 333444444 3456789999999999988754 34 67788888776654 43 4656667899999999999999986
Q ss_pred C-ChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccc-hhhhcccccceecCCccccccccCchhhc
Q 039180 516 L-PSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLP-KALGELTKLRLSDLTDCFHLKVIAPNVIS 593 (790)
Q Consensus 516 l-p~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~l~~~~~l~~~~~~~l~ 593 (790)
+ |..++.+++|++|++++|.++.+.|..++++++|++|++++|.++.++ +.+..+++|++|++++| .+..+++..++
T Consensus 96 ~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 174 (606)
T 3t6q_A 96 MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMS 174 (606)
T ss_dssp ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS-CCCEECHHHHH
T ss_pred cChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccC-cccccChhhhh
Confidence 5 788999999999999999999987788999999999999999998652 33445999999999998 67777777788
Q ss_pred cccccc--eEecccCCccchhhcccc------------------------------------------------------
Q 039180 594 SLTRLE--ELYMGNCPIEWEVERANS------------------------------------------------------ 617 (790)
Q Consensus 594 ~l~~L~--~L~l~~~~~~~~~~~~~~------------------------------------------------------ 617 (790)
.+++|+ .|++++|.+....+....
T Consensus 175 ~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~ 254 (606)
T 3t6q_A 175 SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM 254 (606)
T ss_dssp TTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGS
T ss_pred hhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcC
Confidence 999998 888888876543221100
Q ss_pred ----------cccccccccccCCCCCcEEEEEecCCCCCCcccc-ccccceeEEEecCCCCCCC-ccccCCccCeeeccc
Q 039180 618 ----------ERSNSSLDELMNLPWLTTLEIDVKNDSILPESFL-TQKLERFKISIGNESFMPS-QSVELPNLEALELCA 685 (790)
Q Consensus 618 ----------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~ 685 (790)
......+..++.+++|+.|++++|.+..+|..+. +++|+.|++++|.+...+. .+..+++|+.|++++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 0011112235667777777777777777766543 5677777777776654433 445556666666666
Q ss_pred eecceecccCCCccccccCCCccEEeeccCCcccccc-hhHHHhccccccEEeeccC
Q 039180 686 INVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIF-SASMIQNFELLRELSIADC 741 (790)
Q Consensus 686 ~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~-~~~~~~~l~~L~~L~l~~c 741 (790)
|.+.. ..++..+..+++|+.|++++|. +.... ....+..+++|+.|++++|
T Consensus 335 n~~~~----~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n 386 (606)
T 3t6q_A 335 NTKRL----ELGTGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYN 386 (606)
T ss_dssp CSSCC----BCCSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSC
T ss_pred CCccc----ccchhhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCC
Confidence 54331 1122234455555555555552 22221 0123445555555555554
No 25
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=2.2e-23 Score=218.52 Aligned_cols=252 Identities=18% Similarity=0.136 Sum_probs=156.4
Q ss_pred CceEEEEecCcccc---CCChhhhhccccceeeccC-ccccccchhhhhccCcccEEeccCCCCc-ccchhhhcccccce
Q 039180 501 KKLRVVALVKMLLS---SLPSSIYLLVNLQTLCLDQ-SILRDIDIAIIGKLKNLKILSFVRSDIV-QLPKALGELTKLRL 575 (790)
Q Consensus 501 ~~L~~L~L~~~~~~---~lp~~~~~l~~L~~L~L~~-~~l~~l~p~~i~~l~~L~~L~L~~~~l~-~lp~~l~~l~~L~~ 575 (790)
.+++.|+|+++.+. .+|..++++++|++|++++ |.+.+..|..++++++|++|++++|.++ .+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 35666666666655 3566666666666666663 5555444556666666666666666665 55555666666666
Q ss_pred ecCCccccccccCchhhccccccceEecccCCccchhhcccccccccccccccCCC-CCcEEEEEecCCC-CCCcccccc
Q 039180 576 SDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLP-WLTTLEIDVKNDS-ILPESFLTQ 653 (790)
Q Consensus 576 L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~-~~~~~~~~~ 653 (790)
|++++| .+....+..++++++|++|++++|.+. +..+..+..++ +|+.|++++|.+. ..|..+...
T Consensus 130 L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~-----------~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l 197 (313)
T 1ogq_A 130 LDFSYN-ALSGTLPPSISSLPNLVGITFDGNRIS-----------GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197 (313)
T ss_dssp EECCSS-EEESCCCGGGGGCTTCCEEECCSSCCE-----------EECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred EeCCCC-ccCCcCChHHhcCCCCCeEECcCCccc-----------CcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC
Confidence 666665 333222223566666666666666542 22344455555 5666666655543 334333322
Q ss_pred ccceeEEEecCCCCCC-CccccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCCcccccchhHHHhcccc
Q 039180 654 KLERFKISIGNESFMP-SQSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFEL 732 (790)
Q Consensus 654 ~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~ 732 (790)
+|+.|++++|.+.... ..+..+++|+.|++++|.++.. +| .+..+++|++|++++|.....+| ..+..+++
T Consensus 198 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-----~~-~~~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~ 269 (313)
T 1ogq_A 198 NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD-----LG-KVGLSKNLNGLDLRNNRIYGTLP--QGLTQLKF 269 (313)
T ss_dssp CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB-----GG-GCCCCTTCCEEECCSSCCEECCC--GGGGGCTT
T ss_pred cccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee-----cC-cccccCCCCEEECcCCcccCcCC--hHHhcCcC
Confidence 3666666666655333 3567788999999999987643 23 36778999999999995333442 45788999
Q ss_pred ccEEeeccCchhhhHhhcCCCCCCCCcccCCccceeeccccccccccCh
Q 039180 733 LRELSIADCRGLREIISKDRADHVTPCFVFPQMTTLRLEILPELKCYTL 781 (790)
Q Consensus 733 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~l~~ 781 (790)
|+.|++++|.....++.. . .+++|+.|++.+.|.+...|+
T Consensus 270 L~~L~Ls~N~l~~~ip~~-~--------~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 270 LHSLNVSFNNLCGEIPQG-G--------NLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp CCEEECCSSEEEEECCCS-T--------TGGGSCGGGTCSSSEEESTTS
T ss_pred CCEEECcCCcccccCCCC-c--------cccccChHHhcCCCCccCCCC
Confidence 999999998543344432 3 389999999999998877654
No 26
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=1.6e-23 Score=241.42 Aligned_cols=307 Identities=16% Similarity=0.190 Sum_probs=228.5
Q ss_pred cccceeEEEeecccc-cCCCCcc-CccccceeecccCCCCCCCCCChhhhcc------CCceEEEEecCccccCCCh--h
Q 039180 450 ALKKYLAISLINSRI-NDIPEGL-ESAQLEFLLMIPNNSFLGPNIPENFFKG------VKKLRVVALVKMLLSSLPS--S 519 (790)
Q Consensus 450 ~~~~l~~l~l~~~~~-~~l~~~~-~~~~l~~l~~~~~~~~~~~~lp~~~~~~------l~~L~~L~L~~~~~~~lp~--~ 519 (790)
...+++.+.+++|.+ +.+|..+ ..+++++|.+.++..+.+..+|..+ .. +++|++|++++|.++.+|. .
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~ 325 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDW-QALADAPVGEKIQIIYIGYNNLKTFPVETS 325 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHH-HHHHHSGGGGTCCEEECCSSCCSSCCCHHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHH-HhhhccccCCCCCEEECCCCcCCccCchhh
Confidence 467889999998875 6677766 5667777766655435531266655 34 3889999999998888888 8
Q ss_pred hhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhhhcccc-cceecCCccccccccCchhhcccc--
Q 039180 520 IYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTK-LRLSDLTDCFHLKVIAPNVISSLT-- 596 (790)
Q Consensus 520 ~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~-L~~L~l~~~~~l~~~~~~~l~~l~-- 596 (790)
++++++|++|++++|.+++..| .++.+++|++|++++|.++.+|..+..+++ |++|++++| .++.+|.. ++.++
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N-~l~~lp~~-~~~~~l~ 402 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN-KLKYIPNI-FDAKSVS 402 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSS-CCSSCCSC-CCTTCSS
T ss_pred hccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCC-cCcccchh-hhhcccC
Confidence 8888899999999988884447 888888888888888888888888888888 888888887 56677653 55543
Q ss_pred ccceEecccCCccchhhcc--------------------ccccccccccc-ccCCCCCcEEEEEecCCCCCCccccc---
Q 039180 597 RLEELYMGNCPIEWEVERA--------------------NSERSNSSLDE-LMNLPWLTTLEIDVKNDSILPESFLT--- 652 (790)
Q Consensus 597 ~L~~L~l~~~~~~~~~~~~--------------------~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~--- 652 (790)
+|++|++++|.+....+.. .+... ..+.. +..+++|+.|++++|.+..+|...+.
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~ 481 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETT
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccc
Confidence 7888888877765432210 01111 22322 44589999999999998888876541
Q ss_pred ------cccceeEEEecCCCCCCCccc--cCCccCeeeccceecceecccCCCccccccCCCccEEeecc------CCcc
Q 039180 653 ------QKLERFKISIGNESFMPSQSV--ELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRS------CPKL 718 (790)
Q Consensus 653 ------~~L~~L~l~~~~~~~~~~~~~--~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~------~~~l 718 (790)
++|+.|++++|.+...+..+. .+++|+.|++++|.++.+ |..+..+++|+.|+|++ |...
T Consensus 482 ~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~i------p~~~~~l~~L~~L~Ls~N~~ls~N~l~ 555 (636)
T 4eco_A 482 ENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKF------PTQPLNSSTLKGFGIRNQRDAQGNRTL 555 (636)
T ss_dssp EECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSC------CCGGGGCSSCCEEECCSCBCTTCCBCC
T ss_pred ccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCc------ChhhhcCCCCCEEECCCCcccccCccc
Confidence 289999999999998887665 899999999999998754 67788999999999965 4334
Q ss_pred cccchhHHHhccccccEEeeccCchhhhHhhcCCCCCCCCcccCCccceeeccccccccccCh
Q 039180 719 KYIFSASMIQNFELLRELSIADCRGLREIISKDRADHVTPCFVFPQMTTLRLEILPELKCYTL 781 (790)
Q Consensus 719 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~l~~ 781 (790)
..+| ..+..+++|+.|++++|. ++.++.. .+++|++|+|+++| +..+++
T Consensus 556 ~~~p--~~l~~l~~L~~L~Ls~N~-l~~ip~~----------~~~~L~~L~Ls~N~-l~~~~~ 604 (636)
T 4eco_A 556 REWP--EGITLCPSLTQLQIGSND-IRKVNEK----------ITPNISVLDIKDNP-NISIDL 604 (636)
T ss_dssp CCCC--TTGGGCSSCCEEECCSSC-CCBCCSC----------CCTTCCEEECCSCT-TCEEEC
T ss_pred ccCh--HHHhcCCCCCEEECCCCc-CCccCHh----------HhCcCCEEECcCCC-CccccH
Confidence 4443 457889999999999985 4665542 25899999999987 555543
No 27
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=3.6e-23 Score=244.17 Aligned_cols=255 Identities=20% Similarity=0.167 Sum_probs=158.4
Q ss_pred CCceEEEEecCcccc-CCChhhhhccccceeeccCccccccchhh-hhccCcccEEeccCCCCc-ccchhhhccc-ccce
Q 039180 500 VKKLRVVALVKMLLS-SLPSSIYLLVNLQTLCLDQSILRDIDIAI-IGKLKNLKILSFVRSDIV-QLPKALGELT-KLRL 575 (790)
Q Consensus 500 l~~L~~L~L~~~~~~-~lp~~~~~l~~L~~L~L~~~~l~~l~p~~-i~~l~~L~~L~L~~~~l~-~lp~~l~~l~-~L~~ 575 (790)
+++|++|++++|.+. .+|..++++++|++|++++|.+.+..|.. ++++++|++|++++|.++ .+|..+..++ +|++
T Consensus 293 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~ 372 (768)
T 3rgz_A 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372 (768)
T ss_dssp CTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSE
T ss_pred cCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcE
Confidence 344444444444444 33444444444444444444444222322 444444444444444444 4444444444 4444
Q ss_pred ecCCccccccccCchhhcc--ccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCC-CCCcccc-
Q 039180 576 SDLTDCFHLKVIAPNVISS--LTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDS-ILPESFL- 651 (790)
Q Consensus 576 L~l~~~~~l~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~- 651 (790)
|++++|...+.+|+. +.. +++|++|++++|.+ .+..+..++.+++|+.|++++|.+. ..|..+.
T Consensus 373 L~Ls~N~l~~~~~~~-~~~~~~~~L~~L~L~~n~l-----------~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 440 (768)
T 3rgz_A 373 LDLSSNNFSGPILPN-LCQNPKNTLQELYLQNNGF-----------TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 440 (768)
T ss_dssp EECCSSEEEEECCTT-TTCSTTCCCCEEECCSSEE-----------EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred EEccCCCcCCCcChh-hhhcccCCccEEECCCCcc-----------ccccCHHHhcCCCCCEEECcCCcccCcccHHHhc
Confidence 444444222222222 222 44455555555543 2345667888899999999988754 4554443
Q ss_pred ccccceeEEEecCCCC-CCCccccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCCcccccchhHHHhcc
Q 039180 652 TQKLERFKISIGNESF-MPSQSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNF 730 (790)
Q Consensus 652 ~~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l 730 (790)
+++|+.|+++.|.+.. .+..+..+++|+.|++++|.++. ..|..+..+++|+.|+|++|.....+| ..+..+
T Consensus 441 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~-----~~p~~l~~l~~L~~L~L~~N~l~~~~p--~~~~~l 513 (768)
T 3rgz_A 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG-----EIPSGLSNCTNLNWISLSNNRLTGEIP--KWIGRL 513 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS-----CCCGGGGGCTTCCEEECCSSCCCSCCC--GGGGGC
T ss_pred CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC-----cCCHHHhcCCCCCEEEccCCccCCcCC--hHHhcC
Confidence 7889999999988874 45567788999999999998763 257778899999999999996444553 457889
Q ss_pred ccccEEeeccCchhhhHhhcCCCCCCCCcccCCccceeeccccccccccCh
Q 039180 731 ELLRELSIADCRGLREIISKDRADHVTPCFVFPQMTTLRLEILPELKCYTL 781 (790)
Q Consensus 731 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~l~~ 781 (790)
++|+.|++++|.....++.... .+++|++|++++|+--..+|-
T Consensus 514 ~~L~~L~L~~N~l~~~~p~~l~--------~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 514 ENLAILKLSNNSFSGNIPAELG--------DCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp TTCCEEECCSSCCEEECCGGGG--------GCTTCCEEECCSSEEESBCCG
T ss_pred CCCCEEECCCCcccCcCCHHHc--------CCCCCCEEECCCCccCCcCCh
Confidence 9999999999865545555444 389999999998875556653
No 28
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=1.1e-22 Score=240.08 Aligned_cols=310 Identities=18% Similarity=0.137 Sum_probs=184.9
Q ss_pred cceeEEEeeccccc-CCCCcc-CccccceeecccCCCCCCCCCChhhhccCCceEEEEecCcccc-CCChhhhhcc-ccc
Q 039180 452 KKYLAISLINSRIN-DIPEGL-ESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLS-SLPSSIYLLV-NLQ 527 (790)
Q Consensus 452 ~~l~~l~l~~~~~~-~l~~~~-~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~-~lp~~~~~l~-~L~ 527 (790)
..++.+++++|.+. .+|..+ .++++++|.+.++.... .+|...+.++++|++|++++|.+. .+|..+.++. +|+
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~ 371 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG--ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 371 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEE--ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCS
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccC--cCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCc
Confidence 56667777766664 445444 44555555554443332 366665677777777777777776 5677776665 666
Q ss_pred eeeccCccccccchhhhhc--cCcccEEeccCCCCc-ccchhhhcccccceecCCccccccccCchhhccccccceEecc
Q 039180 528 TLCLDQSILRDIDIAIIGK--LKNLKILSFVRSDIV-QLPKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMG 604 (790)
Q Consensus 528 ~L~L~~~~l~~l~p~~i~~--l~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~ 604 (790)
+|++++|.+++..|..++. +++|++|++++|.++ .+|..+.++++|++|++++| .+....+..++++++|+.|+++
T Consensus 372 ~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~L~ 450 (768)
T 3rgz_A 372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN-YLSGTIPSSLGSLSKLRDLKLW 450 (768)
T ss_dssp EEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS-EEESCCCGGGGGCTTCCEEECC
T ss_pred EEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCC-cccCcccHHHhcCCCCCEEECC
Confidence 6666666655444444444 555666666666555 55555666666666666665 3332223335566666666666
Q ss_pred cCCccchhhc-------------ccccccccccccccCCCCCcEEEEEecCCC-CCCcccc-ccccceeEEEecCCC-CC
Q 039180 605 NCPIEWEVER-------------ANSERSNSSLDELMNLPWLTTLEIDVKNDS-ILPESFL-TQKLERFKISIGNES-FM 668 (790)
Q Consensus 605 ~~~~~~~~~~-------------~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~-~~~L~~L~l~~~~~~-~~ 668 (790)
+|.+...++. ..+...+..+..++.+++|+.|++++|.+. .+|.++. +++|+.|++++|.+. ..
T Consensus 451 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 530 (768)
T 3rgz_A 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEEC
T ss_pred CCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcC
Confidence 6554322111 011122344556677777777777777755 4555543 677777777777766 34
Q ss_pred CCccccCCccCeeeccceecceecc-------------------------------------------------------
Q 039180 669 PSQSVELPNLEALELCAINVDKIWH------------------------------------------------------- 693 (790)
Q Consensus 669 ~~~~~~l~~L~~L~l~~~~l~~l~~------------------------------------------------------- 693 (790)
|..+..+++|+.|++++|.++....
T Consensus 531 p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 610 (768)
T 3rgz_A 531 PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGT
T ss_pred CHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccc
Confidence 4466677777788877776541100
Q ss_pred ----------cCCCccccccCCCccEEeeccCCcccccchhHHHhccccccEEeeccCchhhhHhhcCCCCCCCCcccCC
Q 039180 694 ----------YNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFELLRELSIADCRGLREIISKDRADHVTPCFVFP 763 (790)
Q Consensus 694 ----------~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~p 763 (790)
.+..|..++.+++|+.|+|++|.....+| ..++++++|+.|+++++.....++...+. ++
T Consensus 611 ~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip--~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~--------L~ 680 (768)
T 3rgz_A 611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP--KEIGSMPYLFILNLGHNDISGSIPDEVGD--------LR 680 (768)
T ss_dssp CCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC--GGGGGCTTCCEEECCSSCCCSCCCGGGGG--------CT
T ss_pred cccccccceecccCchhhhccccccEEECcCCcccccCC--HHHhccccCCEEeCcCCccCCCCChHHhC--------CC
Confidence 00112234556778888888885444443 35778888888888887544455554444 88
Q ss_pred ccceeeccccc
Q 039180 764 QMTTLRLEILP 774 (790)
Q Consensus 764 ~L~~L~l~~c~ 774 (790)
+|++|+|+++.
T Consensus 681 ~L~~LdLs~N~ 691 (768)
T 3rgz_A 681 GLNILDLSSNK 691 (768)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEECCCCc
Confidence 89999988764
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=9e-23 Score=243.39 Aligned_cols=295 Identities=17% Similarity=0.182 Sum_probs=195.4
Q ss_pred eEecCCccccCCCcccccceeEEEeecccccCCC-Ccc-CccccceeecccCCCCCCCCCChhhhccCCceEEEEecCcc
Q 039180 435 FVVRNKNMWEWPNPDALKKYLAISLINSRINDIP-EGL-ESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKML 512 (790)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~-~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~ 512 (790)
..+....+..+|. .+.+++++++++|.+..++ ..+ .+++++.|.+.+++... .+++..|.++++|++|+|++|.
T Consensus 9 ~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~--~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 9 AFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL--TIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCC--EECTTTTSSCTTCCEEECTTCC
T ss_pred EEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCcc--ccCHHHhcCCCCCCEEECCCCc
Confidence 3444556666666 7889999999999997764 333 67788888777765544 5766778999999999999999
Q ss_pred ccCC-ChhhhhccccceeeccCccccccchhh--hhccCcccEEeccCCCCccc--chhhhcccccceecCCcccccccc
Q 039180 513 LSSL-PSSIYLLVNLQTLCLDQSILRDIDIAI--IGKLKNLKILSFVRSDIVQL--PKALGELTKLRLSDLTDCFHLKVI 587 (790)
Q Consensus 513 ~~~l-p~~~~~l~~L~~L~L~~~~l~~l~p~~--i~~l~~L~~L~L~~~~l~~l--p~~l~~l~~L~~L~l~~~~~l~~~ 587 (790)
+..+ |..|+++++|++|+|++|.+++..|.. ++++++|++|+|++|.++.+ +..++++++|++|++++| .+..+
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N-~i~~~ 163 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN-QIFLV 163 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS-CCCCC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC-cCCee
Confidence 9866 889999999999999999998754555 88999999999999998855 356899999999999998 55555
Q ss_pred Cchhhccc--cccceEecccCCccchhhcc-------------------ccccccc------------------------
Q 039180 588 APNVISSL--TRLEELYMGNCPIEWEVERA-------------------NSERSNS------------------------ 622 (790)
Q Consensus 588 ~~~~l~~l--~~L~~L~l~~~~~~~~~~~~-------------------~~~~~~~------------------------ 622 (790)
.+..++.+ ++|+.|++++|.+....+.. .+.....
T Consensus 164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~ 243 (844)
T 3j0a_A 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243 (844)
T ss_dssp CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence 44446655 66777777666553211100 0000000
Q ss_pred ------------ccccccC--CCCCcEEEEEecCCCCCCccc--cccccceeEEEecCCCCCCC-ccccCCccCeeeccc
Q 039180 623 ------------SLDELMN--LPWLTTLEIDVKNDSILPESF--LTQKLERFKISIGNESFMPS-QSVELPNLEALELCA 685 (790)
Q Consensus 623 ------------~~~~l~~--l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~ 685 (790)
....+.. .++|+.|++++|.+..++... .+++|+.|++++|.+...+. .+..+++|+.|++++
T Consensus 244 ~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~ 323 (844)
T 3j0a_A 244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323 (844)
T ss_dssp BCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEES
T ss_pred cccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCC
Confidence 0001111 145666666665544433222 25666666666666655433 455566666666666
Q ss_pred eecceecccCCCccccccCCCccEEeeccCCcccccchhHHHhccccccEEeeccC
Q 039180 686 INVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFELLRELSIADC 741 (790)
Q Consensus 686 ~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l~~c 741 (790)
|.++.+ .|..+..+++|+.|++++| .+..++. ..+.++++|+.|++++|
T Consensus 324 N~l~~~-----~~~~~~~l~~L~~L~L~~N-~i~~~~~-~~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 324 NLLGEL-----YSSNFYGLPKVAYIDLQKN-HIAIIQD-QTFKFLEKLQTLDLRDN 372 (844)
T ss_dssp CCCSCC-----CSCSCSSCTTCCEEECCSC-CCCCCCS-SCSCSCCCCCEEEEETC
T ss_pred CCCCcc-----CHHHhcCCCCCCEEECCCC-CCCccCh-hhhcCCCCCCEEECCCC
Confidence 665533 3445666667777777666 3444432 23456667777777665
No 30
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=5.7e-23 Score=233.97 Aligned_cols=189 Identities=19% Similarity=0.183 Sum_probs=125.3
Q ss_pred ccccCCCcccccceeEEEeecccccCCCC-cc-CccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCCCh
Q 039180 441 NMWEWPNPDALKKYLAISLINSRINDIPE-GL-ESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLPS 518 (790)
Q Consensus 441 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~-~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp~ 518 (790)
.+..+|. ..+..++++++++|.+..+++ .+ .++++++|.+.++ .+. .+++..|.++++|++|++++|.+..+|.
T Consensus 16 ~l~~ip~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 91 (549)
T 2z81_A 16 SFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RIN--TIEGDAFYSLGSLEHLDLSDNHLSSLSS 91 (549)
T ss_dssp CCSSCCS-CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCC--EECTTTTTTCTTCCEEECTTSCCCSCCH
T ss_pred ccccccc-cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcC--ccChhhccccccCCEEECCCCccCccCH
Confidence 4444443 334678888888887766643 33 5566666655544 333 3555556778888888888888776654
Q ss_pred h-hhhccccceeeccCcccccc-chhhhhccCcccEEeccCCC-Ccccc-hhhhcccccceecCCccccccccCchhhcc
Q 039180 519 S-IYLLVNLQTLCLDQSILRDI-DIAIIGKLKNLKILSFVRSD-IVQLP-KALGELTKLRLSDLTDCFHLKVIAPNVISS 594 (790)
Q Consensus 519 ~-~~~l~~L~~L~L~~~~l~~l-~p~~i~~l~~L~~L~L~~~~-l~~lp-~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~ 594 (790)
. ++.+++|++|++++|.++.+ .|..++++++|++|++++|. +..+| ..+..+++|++|++++| .+....+..+++
T Consensus 92 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~ 170 (549)
T 2z81_A 92 SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL-SLRNYQSQSLKS 170 (549)
T ss_dssp HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTT
T ss_pred HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC-cccccChhhhhc
Confidence 4 77888888888888877653 25667778888888888876 55665 45777888888888877 455444445777
Q ss_pred ccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCC
Q 039180 595 LTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSI 645 (790)
Q Consensus 595 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 645 (790)
+++|++|++++|.+.... ...+..+++|+.|++++|.+..
T Consensus 171 l~~L~~L~l~~n~~~~~~-----------~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 171 IRDIHHLTLHLSESAFLL-----------EIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp CSEEEEEEEECSBSTTHH-----------HHHHHSTTTBSEEEEESCBCTT
T ss_pred cccCceEecccCcccccc-----------hhhHhhcccccEEEccCCcccc
Confidence 888888888777653111 1123457788888888877554
No 31
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=9.2e-23 Score=235.17 Aligned_cols=151 Identities=21% Similarity=0.165 Sum_probs=125.3
Q ss_pred eeEEEeecccccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCC-Chhhhhccccceeecc
Q 039180 454 YLAISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSL-PSSIYLLVNLQTLCLD 532 (790)
Q Consensus 454 l~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~ 532 (790)
-+.++..+..+..+|..+. ..+ +.+.+++|.+. .+++..|.++++|++|++++|.+..+ |..|+++++|++|+|+
T Consensus 14 ~~~~~c~~~~l~~iP~~l~-~~l-~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 89 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLP-NST-ECLEFSFNVLP--TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT 89 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC-TTC-CEEECTTCCCS--EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CceEECCCCCcccCcCCCC-CcC-cEEEccCCccC--cCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCC
Confidence 4467777888888987652 234 44555566666 57666779999999999999999866 8889999999999999
Q ss_pred CccccccchhhhhccCcccEEeccCCCCccc-chhhhcccccceecCCccccccccCchhhccccccceEecccCCcc
Q 039180 533 QSILRDIDIAIIGKLKNLKILSFVRSDIVQL-PKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIE 609 (790)
Q Consensus 533 ~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 609 (790)
+|.++...|..++++++|++|++++|.++.+ |..++++++|++|++++| .+..++...+..+++|++|++++|.+.
T Consensus 90 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~ 166 (606)
T 3t6q_A 90 ANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIH 166 (606)
T ss_dssp TCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSCCC
T ss_pred CCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCC-cccccCcccccCCcccCEEEcccCccc
Confidence 9999998889999999999999999999977 567899999999999998 666654333556999999999999875
No 32
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=9e-23 Score=216.20 Aligned_cols=285 Identities=16% Similarity=0.207 Sum_probs=214.5
Q ss_pred cceeEEEeecccccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCC-Chhhhhccccceee
Q 039180 452 KKYLAISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSL-PSSIYLLVNLQTLC 530 (790)
Q Consensus 452 ~~l~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~ 530 (790)
.+++.+.++++.+..+|..+ .++++.|.+.+ +.+. .+++..|.++++|++|++++|.++.+ |..++.+++|++|+
T Consensus 33 c~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~-n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI-SPDTTLLDLQN-NDIS--ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC-CTTCCEEECCS-SCCC--EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred ccCCEEECCCCCccccCCCC-CCCCeEEECCC-CcCC--ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 46788999999999988765 35666655544 4454 57666678999999999999999876 78899999999999
Q ss_pred ccCccccccchhhhhccCcccEEeccCCCCcccchh-hhcccccceecCCccccccc--cCchhhccccccceEecccCC
Q 039180 531 LDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKA-LGELTKLRLSDLTDCFHLKV--IAPNVISSLTRLEELYMGNCP 607 (790)
Q Consensus 531 L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l~~~~~l~~--~~~~~l~~l~~L~~L~l~~~~ 607 (790)
+++|.++.+ |..+. ++|++|++++|.++.+|.. +..+++|++|++++| .++. .++..+..+ +|++|++++|.
T Consensus 109 L~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l-~L~~L~l~~n~ 183 (332)
T 2ft3_A 109 ISKNHLVEI-PPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN-PLENSGFEPGAFDGL-KLNYLRISEAK 183 (332)
T ss_dssp CCSSCCCSC-CSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSC-CCBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred CCCCcCCcc-Ccccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCC-ccccCCCCcccccCC-ccCEEECcCCC
Confidence 999999887 65554 8999999999999988764 788999999999998 4532 445557777 99999999998
Q ss_pred ccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCcc-c-cccccceeEEEecCCCCCCC-ccccCCccCeeecc
Q 039180 608 IEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPES-F-LTQKLERFKISIGNESFMPS-QSVELPNLEALELC 684 (790)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~ 684 (790)
+.. .+..+ .++|+.|++++|.+..++.. + .+++|+.|++++|.+...+. .+..+++|+.|+++
T Consensus 184 l~~------------l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 249 (332)
T 2ft3_A 184 LTG------------IPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD 249 (332)
T ss_dssp CSS------------CCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECC
T ss_pred CCc------------cCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECC
Confidence 742 22222 26899999999988777632 2 37899999999998887765 67789999999999
Q ss_pred ceecceecccCCCccccccCCCccEEeeccCCcccccchhHHHh------ccccccEEeeccCchhh-hHhhcCCCCCCC
Q 039180 685 AINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQ------NFELLRELSIADCRGLR-EIISKDRADHVT 757 (790)
Q Consensus 685 ~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~------~l~~L~~L~l~~c~~l~-~~~~~~~~~~~~ 757 (790)
+|.++.+ |..+..+++|+.|++++| .++.++.. .+. .+++|+.|++.+++... .+...
T Consensus 250 ~N~l~~l------p~~l~~l~~L~~L~l~~N-~l~~~~~~-~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~------- 314 (332)
T 2ft3_A 250 NNKLSRV------PAGLPDLKLLQVVYLHTN-NITKVGVN-DFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA------- 314 (332)
T ss_dssp SSCCCBC------CTTGGGCTTCCEEECCSS-CCCBCCTT-SSSCSSCCSSSCCBSEEECCSSSSCGGGSCGG-------
T ss_pred CCcCeec------ChhhhcCccCCEEECCCC-CCCccChh-HccccccccccccccceEeecCcccccccCcc-------
Confidence 9988865 666889999999999999 56766432 222 25789999999987321 11111
Q ss_pred CcccCCccceeeccccc
Q 039180 758 PCFVFPQMTTLRLEILP 774 (790)
Q Consensus 758 ~~~~~p~L~~L~l~~c~ 774 (790)
....+++|+.|+++++.
T Consensus 315 ~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 315 TFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGTTBCCSTTEEC----
T ss_pred cccccchhhhhhccccc
Confidence 11247888888888765
No 33
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=1.4e-22 Score=212.29 Aligned_cols=249 Identities=18% Similarity=0.186 Sum_probs=135.4
Q ss_pred cceeEEEeeccccc---CCCCcc-CccccceeecccCCCCCCCCCChhhhccCCceEEEEecCcccc-CCChhhhhcccc
Q 039180 452 KKYLAISLINSRIN---DIPEGL-ESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLS-SLPSSIYLLVNL 526 (790)
Q Consensus 452 ~~l~~l~l~~~~~~---~l~~~~-~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~-~lp~~~~~l~~L 526 (790)
.++++++++++.+. .+|..+ .++++++|.+.+++.+.+ .+|.. +.++++|++|++++|.+. .+|..+.++++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~-~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG-PIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES-CCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccc-cCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 57888888877775 355444 344455554443222221 24443 245555666666555555 455555555566
Q ss_pred ceeeccCccccccchhhhhccCcccEEeccCCCCc-ccchhhhccc-ccceecCCccccccccCchhhccccccceEecc
Q 039180 527 QTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIV-QLPKALGELT-KLRLSDLTDCFHLKVIAPNVISSLTRLEELYMG 604 (790)
Q Consensus 527 ~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~-~lp~~l~~l~-~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~ 604 (790)
++|++++|.+++..|..++.+++|++|++++|.++ .+|..++.++ +|++|++++| .+....+..++.++ |++|+++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N-~l~~~~~~~~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPTFANLN-LAFVDLS 205 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS-EEEEECCGGGGGCC-CSEEECC
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC-eeeccCChHHhCCc-ccEEECc
Confidence 66666665555444555555556666666655555 5555555555 5556666555 33322222345554 5555555
Q ss_pred cCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCccccccccceeEEEecCCCCCCCccccCCccCeeecc
Q 039180 605 NCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFLTQKLERFKISIGNESFMPSQSVELPNLEALELC 684 (790)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 684 (790)
+|.+. ...+..+..+++|+.|++++|. +......+..+++|++|+++
T Consensus 206 ~N~l~-----------~~~~~~~~~l~~L~~L~L~~N~----------------------l~~~~~~~~~l~~L~~L~Ls 252 (313)
T 1ogq_A 206 RNMLE-----------GDASVLFGSDKNTQKIHLAKNS----------------------LAFDLGKVGLSKNLNGLDLR 252 (313)
T ss_dssp SSEEE-----------ECCGGGCCTTSCCSEEECCSSE----------------------ECCBGGGCCCCTTCCEEECC
T ss_pred CCccc-----------CcCCHHHhcCCCCCEEECCCCc----------------------eeeecCcccccCCCCEEECc
Confidence 55442 1223344555555555555554 33222233456677777777
Q ss_pred ceecceecccCCCccccccCCCccEEeeccCCcccccchhHHHhccccccEEeeccCchhh
Q 039180 685 AINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFELLRELSIADCRGLR 745 (790)
Q Consensus 685 ~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 745 (790)
+|.++.. .|..+..+++|+.|+|++|.....+|. ...+++|+.|++.+++.+.
T Consensus 253 ~N~l~~~-----~p~~l~~l~~L~~L~Ls~N~l~~~ip~---~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 253 NNRIYGT-----LPQGLTQLKFLHSLNVSFNNLCGEIPQ---GGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp SSCCEEC-----CCGGGGGCTTCCEEECCSSEEEEECCC---STTGGGSCGGGTCSSSEEE
T ss_pred CCcccCc-----CChHHhcCcCCCEEECcCCcccccCCC---CccccccChHHhcCCCCcc
Confidence 7766532 355566777777777777743334433 2566777777777766443
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=2e-22 Score=218.80 Aligned_cols=276 Identities=20% Similarity=0.253 Sum_probs=212.5
Q ss_pred cCCccccCCCc--ccccceeEEEeecccccCCCC-cc-CccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccc
Q 039180 438 RNKNMWEWPNP--DALKKYLAISLINSRINDIPE-GL-ESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLL 513 (790)
Q Consensus 438 ~~~~~~~~~~~--~~~~~l~~l~l~~~~~~~l~~-~~-~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~ 513 (790)
.+..+..++.. ....+++.+++++|.+..++. .+ ..+++++|.+.++ .+. .+++..|.++++|++|++++|.+
T Consensus 53 ~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~--~~~~~~~~~l~~L~~L~L~~n~l 129 (390)
T 3o6n_A 53 KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIR--YLPPHVFQNVPLLTVLVLERNDL 129 (390)
T ss_dssp ESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCC--CCCTTTTTTCTTCCEEECCSSCC
T ss_pred cCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCC--cCCHHHhcCCCCCCEEECCCCcc
Confidence 33344444543 345789999999999988765 33 5677777766555 454 57777789999999999999999
Q ss_pred cCCChh-hhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceecCCccccccccCch-h
Q 039180 514 SSLPSS-IYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSDLTDCFHLKVIAPN-V 591 (790)
Q Consensus 514 ~~lp~~-~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~~~~~-~ 591 (790)
+.+|.. +..+++|++|++++|.++...|..++.+++|++|++++|.++.++ +..+++|++|++++| .++.++.. .
T Consensus 130 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n-~l~~~~~~~~ 206 (390)
T 3o6n_A 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYN-LLSTLAIPIA 206 (390)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSS-CCSEEECCSS
T ss_pred CcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccc-cccccCCCCc
Confidence 999876 589999999999999999987788999999999999999998775 556777777777765 33322100 0
Q ss_pred ---------------hccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCC-ccc-cccc
Q 039180 592 ---------------ISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILP-ESF-LTQK 654 (790)
Q Consensus 592 ---------------l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~-~~~~ 654 (790)
...+++|+.|++++|.+. ....+..+++|+.|++++|.+...+ ..+ .+++
T Consensus 207 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~-------------~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 273 (390)
T 3o6n_A 207 VEELDASHNSINVVRGPVNVELTILKLQHNNLT-------------DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 273 (390)
T ss_dssp CSEEECCSSCCCEEECCCCSSCCEEECCSSCCC-------------CCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSS
T ss_pred ceEEECCCCeeeeccccccccccEEECCCCCCc-------------ccHHHcCCCCccEEECCCCcCCCcChhHcccccc
Confidence 012345666666666542 1246788999999999999977663 333 3789
Q ss_pred cceeEEEecCCCCCCCccccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCCcccccchhHHHhcccccc
Q 039180 655 LERFKISIGNESFMPSQSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFELLR 734 (790)
Q Consensus 655 L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~ 734 (790)
|+.|++++|.+...+.....+++|+.|++++|.++.+ |..+..+++|+.|++++|+ ++.++ +..+++|+
T Consensus 274 L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~l~~L~~L~L~~N~-i~~~~----~~~~~~L~ 342 (390)
T 3o6n_A 274 LERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV------ERNQPQFDRLENLYLDHNS-IVTLK----LSTHHTLK 342 (390)
T ss_dssp CCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCC------GGGHHHHTTCSEEECCSSC-CCCCC----CCTTCCCS
T ss_pred CCEEECCCCcCcccCcccCCCCCCCEEECCCCcceec------CccccccCcCCEEECCCCc-cceeC----chhhccCC
Confidence 9999999999988777677899999999999988764 5567889999999999995 66663 56889999
Q ss_pred EEeeccCch
Q 039180 735 ELSIADCRG 743 (790)
Q Consensus 735 ~L~l~~c~~ 743 (790)
.|++++++-
T Consensus 343 ~L~l~~N~~ 351 (390)
T 3o6n_A 343 NLTLSHNDW 351 (390)
T ss_dssp EEECCSSCE
T ss_pred EEEcCCCCc
Confidence 999999763
No 35
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=7.9e-22 Score=230.57 Aligned_cols=318 Identities=17% Similarity=0.166 Sum_probs=213.9
Q ss_pred ecCCccccCCCcccccceeEEEeecccccCCCCc-c-CccccceeecccCCCCCCCCCChhhhccCCceEEEEecCcccc
Q 039180 437 VRNKNMWEWPNPDALKKYLAISLINSRINDIPEG-L-ESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLS 514 (790)
Q Consensus 437 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~ 514 (790)
+.+..+..+|. ..+.+++++++++|.+..+++. + .++++++|.+.++ .+. .+++..|.++++|++|++++|.+.
T Consensus 11 cs~~~L~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~--~~~~~~~~~l~~L~~L~L~~n~l~ 86 (680)
T 1ziw_A 11 CSHLKLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TIS--KLEPELCQKLPMLKVLNLQHNELS 86 (680)
T ss_dssp CCSSCCSSCCS-CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS-CCC--CCCTTHHHHCTTCCEEECCSSCCC
T ss_pred CCCCCcccccc-ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC-ccC--ccCHHHHhcccCcCEEECCCCccC
Confidence 34444555553 3468999999999999888863 3 6677777766554 444 466667789999999999999999
Q ss_pred CCCh-hhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCccc-chhhhcccccceecCCccccccccCchhh
Q 039180 515 SLPS-SIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQL-PKALGELTKLRLSDLTDCFHLKVIAPNVI 592 (790)
Q Consensus 515 ~lp~-~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~l~~~~~l~~~~~~~l 592 (790)
.+|. .|+++++|++|++++|.++.+.|..++++++|++|++++|.++.+ |..++++++|++|++++| .++.+++..+
T Consensus 87 ~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~ 165 (680)
T 1ziw_A 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEEL 165 (680)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCHHHH
T ss_pred ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC-cccccCHHHh
Confidence 8876 699999999999999999988678899999999999999988854 556789999999999998 6777766555
Q ss_pred c--cccccceEecccCCccchhhcccccccc-----------------cccccccCCCCCcEEEEEecCCCCCCcc-cc-
Q 039180 593 S--SLTRLEELYMGNCPIEWEVERANSERSN-----------------SSLDELMNLPWLTTLEIDVKNDSILPES-FL- 651 (790)
Q Consensus 593 ~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~-----------------~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~- 651 (790)
+ .+++|++|++++|.+....+........ .....+ ..++|+.|++++|.....+.. +.
T Consensus 166 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l-~~~~L~~L~L~~n~l~~~~~~~~~~ 244 (680)
T 1ziw_A 166 DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQLSTTSNTTFLG 244 (680)
T ss_dssp GGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH-TTSCCCEEECTTSCCCEECTTTTGG
T ss_pred hccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHh-hhccccEEEccCCcccccChhHhhc
Confidence 4 4689999999998775332210000000 000000 235677777777765544322 21
Q ss_pred c--cccceeEEEecCCCCCCC-ccccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCCccc-----ccch
Q 039180 652 T--QKLERFKISIGNESFMPS-QSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLK-----YIFS 723 (790)
Q Consensus 652 ~--~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~-----~~~~ 723 (790)
+ ++|+.|++++|.+...+. .+..+++|+.|++++|.++.+ +|..+..+++|+.|++++|..-. .++.
T Consensus 245 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~ 319 (680)
T 1ziw_A 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL-----FSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319 (680)
T ss_dssp GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEE-----CTTTTTTCTTCCEEECTTCBCCC------CCE
T ss_pred cCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCcc-----ChhhhcCCCCccEEeccchhhhcccccccccc
Confidence 2 348888888887765543 566778888888888877654 34556677777777777653211 1110
Q ss_pred --hHHHhccccccEEeeccCchhhhHhhcCCCCCCCCcccCCccceeecccc
Q 039180 724 --ASMIQNFELLRELSIADCRGLREIISKDRADHVTPCFVFPQMTTLRLEIL 773 (790)
Q Consensus 724 --~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c 773 (790)
...+..+++|+.|++++|. +..++.... ..+++|++|++++|
T Consensus 320 i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-------~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 320 IDDFSFQWLKCLEHLNMEDND-IPGIKSNMF-------TGLINLKYLSLSNS 363 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCC-BCCCCTTTT-------TTCTTCCEEECTTC
T ss_pred cChhhcccCCCCCEEECCCCc-cCCCChhHh-------ccccCCcEEECCCC
Confidence 0134566777777777653 333322111 23566666666554
No 36
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.88 E-value=2.9e-22 Score=214.21 Aligned_cols=268 Identities=17% Similarity=0.207 Sum_probs=194.8
Q ss_pred EEeecccccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCC-ChhhhhccccceeeccCcc
Q 039180 457 ISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSL-PSSIYLLVNLQTLCLDQSI 535 (790)
Q Consensus 457 l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~~~~ 535 (790)
.+.+++.+..+|..+. +++++|.+.++ .+. .+|...+.++++|++|++++|.++.+ |..+.++++|++|++++|.
T Consensus 36 c~~~~~~l~~iP~~~~-~~L~~L~l~~n-~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT-EAVKSLDLSNN-RIT--YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EECCSTTCSSCCTTCC-TTCCEEECTTS-CCC--EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred eeCCCCCccccccccc-ccCcEEECCCC-cCc--ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 5667778888887543 35555555444 444 57776678899999999999988866 5678889999999999999
Q ss_pred ccccchhhhhccCcccEEeccCCCCcccch--hhhcccccceecCCccccccccCchhhccccccceEecccCCccchhh
Q 039180 536 LRDIDIAIIGKLKNLKILSFVRSDIVQLPK--ALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVE 613 (790)
Q Consensus 536 l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~--~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 613 (790)
++.+.+..++++++|++|++++|.++.+|. .+..+++|++|++++|..++.+++..++++++|++|++++|.+.
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~---- 187 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ---- 187 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC----
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC----
Confidence 888855568889999999999998888876 67888999999999886677777777888999999999888763
Q ss_pred cccccccccccccccCCCCCcEEEEEecCCCCCCcccc--ccccceeEEEecCCCCCCC----ccccCCccCeeecccee
Q 039180 614 RANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFL--TQKLERFKISIGNESFMPS----QSVELPNLEALELCAIN 687 (790)
Q Consensus 614 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~----~~~~l~~L~~L~l~~~~ 687 (790)
...+..+..+++|+.|++++|....++.... +++|+.|++++|.+...+. .....+.++.+++.++.
T Consensus 188 -------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~ 260 (353)
T 2z80_A 188 -------SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 260 (353)
T ss_dssp -------EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB
T ss_pred -------ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccc
Confidence 2235667788889999999888777766543 6788888888887765443 12234556666666665
Q ss_pred cceecccCCCccccccCCCccEEeeccCCcccccchhHHHhccccccEEeeccCc
Q 039180 688 VDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFELLRELSIADCR 742 (790)
Q Consensus 688 l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~ 742 (790)
+.+-.. ...|..+..+++|+.|++++| .++.++. ..+..+++|+.|++++++
T Consensus 261 l~~~~l-~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~-~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 261 ITDESL-FQVMKLLNQISGLLELEFSRN-QLKSVPD-GIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCHHHH-HHHHHHHHTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC
T ss_pred ccCcch-hhhHHHHhcccCCCEEECCCC-CCCccCH-HHHhcCCCCCEEEeeCCC
Confidence 443110 012455677888888888888 5666643 335677888888888775
No 37
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=1.2e-21 Score=221.31 Aligned_cols=82 Identities=17% Similarity=0.212 Sum_probs=49.8
Q ss_pred ccceeEEEecCCCCCCCccccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCCcccccch-hHHHhcccc
Q 039180 654 KLERFKISIGNESFMPSQSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFS-ASMIQNFEL 732 (790)
Q Consensus 654 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~-~~~~~~l~~ 732 (790)
+|+.|++++|.+...+. ...+++|++|++++|.+++. .|..++.+++|+.|++++| .++.++. +..+..+++
T Consensus 303 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~ 375 (520)
T 2z7x_B 303 NIKNFTVSGTRMVHMLC-PSKISPFLHLDFSNNLLTDT-----VFENCGHLTELETLILQMN-QLKELSKIAEMTTQMKS 375 (520)
T ss_dssp CCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTT-----TTTTCCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTT
T ss_pred ceeEEEcCCCccccccc-hhhCCcccEEEeECCccChh-----hhhhhccCCCCCEEEccCC-ccCccccchHHHhhCCC
Confidence 35555555554433221 24667777777777776642 3555677777777777777 3454321 234667777
Q ss_pred ccEEeeccCc
Q 039180 733 LRELSIADCR 742 (790)
Q Consensus 733 L~~L~l~~c~ 742 (790)
|+.|++++|.
T Consensus 376 L~~L~Ls~N~ 385 (520)
T 2z7x_B 376 LQQLDISQNS 385 (520)
T ss_dssp CCEEECCSSC
T ss_pred CCEEECCCCc
Confidence 7777777764
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=2.9e-22 Score=229.64 Aligned_cols=276 Identities=20% Similarity=0.253 Sum_probs=212.5
Q ss_pred cCCccccCCCc--ccccceeEEEeecccccCCCC-cc-CccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccc
Q 039180 438 RNKNMWEWPNP--DALKKYLAISLINSRINDIPE-GL-ESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLL 513 (790)
Q Consensus 438 ~~~~~~~~~~~--~~~~~l~~l~l~~~~~~~l~~-~~-~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~ 513 (790)
.+..+..++.. .....++.+++++|.+..+++ .+ .++++++|.+.++ .+. .+|+..|.++++|++|+|++|.+
T Consensus 59 ~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~--~~~~~~~~~l~~L~~L~L~~n~l 135 (597)
T 3oja_B 59 KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIR--YLPPHVFQNVPLLTVLVLERNDL 135 (597)
T ss_dssp SSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCC--CCCTTTTTTCTTCCEEECCSSCC
T ss_pred eCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCC--CCCHHHHcCCCCCCEEEeeCCCC
Confidence 33334444443 235789999999999988765 44 5667777766554 455 58888889999999999999999
Q ss_pred cCCChh-hhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceecCCccccccccCch-h
Q 039180 514 SSLPSS-IYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSDLTDCFHLKVIAPN-V 591 (790)
Q Consensus 514 ~~lp~~-~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~~~~~-~ 591 (790)
+.+|.. |+++++|++|+|++|.++++.|..++.+++|++|++++|.++.+| ++.+++|++|++++| .+..++.. .
T Consensus 136 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n-~l~~l~~~~~ 212 (597)
T 3oja_B 136 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYN-LLSTLAIPIA 212 (597)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSS-CCSEEECCTT
T ss_pred CCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccC-ccccccCCch
Confidence 998776 589999999999999999987888999999999999999998775 566778888877776 33332110 0
Q ss_pred ---------------hccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCC-ccc-cccc
Q 039180 592 ---------------ISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILP-ESF-LTQK 654 (790)
Q Consensus 592 ---------------l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~-~~~~ 654 (790)
-...++|+.|++++|.+. .+..+..+++|+.|++++|.+...+ ..+ .+++
T Consensus 213 L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~-------------~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 279 (597)
T 3oja_B 213 VEELDASHNSINVVRGPVNVELTILKLQHNNLT-------------DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 279 (597)
T ss_dssp CSEEECCSSCCCEEECSCCSCCCEEECCSSCCC-------------CCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSS
T ss_pred hheeeccCCcccccccccCCCCCEEECCCCCCC-------------CChhhccCCCCCEEECCCCccCCCCHHHhcCccC
Confidence 001234555555555442 2356888999999999999977663 333 3789
Q ss_pred cceeEEEecCCCCCCCccccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCCcccccchhHHHhcccccc
Q 039180 655 LERFKISIGNESFMPSQSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFELLR 734 (790)
Q Consensus 655 L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~ 734 (790)
|+.|++++|.+...+.....+++|+.|+|++|.++.+ |..+..+++|+.|+|++|. +..++ +..+++|+
T Consensus 280 L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i------~~~~~~l~~L~~L~L~~N~-l~~~~----~~~~~~L~ 348 (597)
T 3oja_B 280 LERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV------ERNQPQFDRLENLYLDHNS-IVTLK----LSTHHTLK 348 (597)
T ss_dssp CCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCC------GGGHHHHTTCSEEECCSSC-CCCCC----CCTTCCCS
T ss_pred CCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCcc------CcccccCCCCCEEECCCCC-CCCcC----hhhcCCCC
Confidence 9999999999988877777899999999999988864 6667889999999999995 56653 56889999
Q ss_pred EEeeccCch
Q 039180 735 ELSIADCRG 743 (790)
Q Consensus 735 ~L~l~~c~~ 743 (790)
.|++++++-
T Consensus 349 ~L~l~~N~~ 357 (597)
T 3oja_B 349 NLTLSHNDW 357 (597)
T ss_dssp EEECCSSCE
T ss_pred EEEeeCCCC
Confidence 999999764
No 39
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=1.7e-21 Score=222.08 Aligned_cols=124 Identities=18% Similarity=0.176 Sum_probs=67.2
Q ss_pred ccceeEEEeecccccCCCC-cc-CccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCCChhhhhccccce
Q 039180 451 LKKYLAISLINSRINDIPE-GL-ESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLPSSIYLLVNLQT 528 (790)
Q Consensus 451 ~~~l~~l~l~~~~~~~l~~-~~-~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~ 528 (790)
+.+++.+++++|.+..+++ .+ .++++++|.+.++ .+. .++++.|.++++|++|++++|.++.+|.. .+++|++
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~ 125 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIR--SLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRH 125 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCC--EECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSE
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCC--cCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCE
Confidence 3566666666666655553 22 4444555444333 333 34444455666666666666666655554 5666666
Q ss_pred eeccCccccccc-hhhhhccCcccEEeccCCCCcccchhhhccccc--ceecCCcc
Q 039180 529 LCLDQSILRDID-IAIIGKLKNLKILSFVRSDIVQLPKALGELTKL--RLSDLTDC 581 (790)
Q Consensus 529 L~L~~~~l~~l~-p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L--~~L~l~~~ 581 (790)
|++++|.++.+. |..++++++|++|++++|.++.. .+..+++| ++|++++|
T Consensus 126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp EECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEES
T ss_pred EECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecc
Confidence 666666655532 35566666666666666655531 23344444 66666655
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=2.9e-21 Score=204.40 Aligned_cols=287 Identities=18% Similarity=0.230 Sum_probs=191.3
Q ss_pred cceeEEEeecccccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCC-Chhhhhccccceee
Q 039180 452 KKYLAISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSL-PSSIYLLVNLQTLC 530 (790)
Q Consensus 452 ~~l~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~ 530 (790)
.+++.+.++++.+..+|..+. +.++.| .++++.+. .++...|.++++|++|++++|.++.+ |..+..+++|++|+
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~-~~l~~L-~L~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP-PDTALL-DLQNNKIT--EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC-TTCCEE-ECCSSCCC--CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCeEEEecCCCccccCccCC-CCCeEE-ECCCCcCC--EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 356777777777777776442 445444 44445555 56666677888888888888888766 77788888888888
Q ss_pred ccCccccccchhhhhccCcccEEeccCCCCcccch-hhhcccccceecCCccccccc--cCchhhccccccceEecccCC
Q 039180 531 LDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPK-ALGELTKLRLSDLTDCFHLKV--IAPNVISSLTRLEELYMGNCP 607 (790)
Q Consensus 531 L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~~~~l~~--~~~~~l~~l~~L~~L~l~~~~ 607 (790)
+++|.++.+ |..+. ++|++|++++|.++.++. .+.++++|++|++++| .+.. ..+..+.++++|++|++++|.
T Consensus 107 Ls~n~l~~l-~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 107 LSKNQLKEL-PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp CCSSCCSBC-CSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred CCCCcCCcc-Chhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCC-cCCccCcChhhccCCCCcCEEECCCCc
Confidence 888888776 55443 688888888888876654 4677888888888887 3432 344557788888888888887
Q ss_pred ccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCc-cc-cccccceeEEEecCCCCCCC-ccccCCccCeeecc
Q 039180 608 IEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPE-SF-LTQKLERFKISIGNESFMPS-QSVELPNLEALELC 684 (790)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~ 684 (790)
+.. .+..+ .++|+.|++++|.+..++. .+ .+++|+.|++++|.+...+. .+..+++|+.|+++
T Consensus 183 l~~------------l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 248 (330)
T 1xku_A 183 ITT------------IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248 (330)
T ss_dssp CCS------------CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECC
T ss_pred ccc------------CCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECC
Confidence 631 12222 2678888888887665533 22 36778888888887776554 56677888888888
Q ss_pred ceecceecccCCCccccccCCCccEEeeccCCcccccchhHH-----HhccccccEEeeccCchhhhHhhcCCCCCCCCc
Q 039180 685 AINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASM-----IQNFELLRELSIADCRGLREIISKDRADHVTPC 759 (790)
Q Consensus 685 ~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~-----~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 759 (790)
+|.++.+ |..+..+++|+.|++++| .++.++.... ....+.|+.|++.+++. ..+..... ..
T Consensus 249 ~N~l~~l------p~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~-~~~~i~~~-----~f 315 (330)
T 1xku_A 249 NNKLVKV------PGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPV-QYWEIQPS-----TF 315 (330)
T ss_dssp SSCCSSC------CTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS-CGGGSCGG-----GG
T ss_pred CCcCccC------ChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcc-cccccCcc-----cc
Confidence 8877754 556777888888888888 4666543211 11247788888888763 22211100 11
Q ss_pred ccCCccceeecccc
Q 039180 760 FVFPQMTTLRLEIL 773 (790)
Q Consensus 760 ~~~p~L~~L~l~~c 773 (790)
..++.|+.++++++
T Consensus 316 ~~~~~l~~l~L~~N 329 (330)
T 1xku_A 316 RCVYVRAAVQLGNY 329 (330)
T ss_dssp TTCCCGGGEEC---
T ss_pred ccccceeEEEeccc
Confidence 23677777777664
No 41
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=7.6e-22 Score=217.59 Aligned_cols=242 Identities=20% Similarity=0.286 Sum_probs=150.2
Q ss_pred ceeEEEeecccccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCC-Chhhhhccccceeec
Q 039180 453 KYLAISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSL-PSSIYLLVNLQTLCL 531 (790)
Q Consensus 453 ~l~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L 531 (790)
....+...+..+..+|..+. +.++.| .+++|.+. .++...|.++++|++|+|++|.+..+ +..|.++++|++|+|
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~-~~l~~L-~L~~n~i~--~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS-TNTRLL-NLHENQIQ--IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC-TTCSEE-ECCSCCCC--EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCcCcCCCCCC-CCCcEE-EccCCcCC--eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 34567777777777776442 334443 33444444 45555567777777777777777655 356677777777777
Q ss_pred cCccccccchhhhhccCcccEEeccCCCCcccch-hhhcccccceecCCccccccccCchhhccccccceEecccCCccc
Q 039180 532 DQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPK-ALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEW 610 (790)
Q Consensus 532 ~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 610 (790)
++|.++.+.+..+..+++|++|+|++|.++.+|. .+..+++|++|++++|..++.++...+.++++|++|++++|.+.
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~- 198 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR- 198 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-
Confidence 7777777645567777777777777777776554 46677777777777766666666666777777777777777653
Q ss_pred hhhcccccccccccccccCCCCCcEEEEEecCCCCCCccc--cccccceeEEEecCCCCCCC-ccccCCccCeeecccee
Q 039180 611 EVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESF--LTQKLERFKISIGNESFMPS-QSVELPNLEALELCAIN 687 (790)
Q Consensus 611 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 687 (790)
.+..+..+++|+.|++++|.+..++... .+++|+.|++++|.+...+. .+..+++|+.|+|++|.
T Consensus 199 ------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 199 ------------EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN 266 (440)
T ss_dssp ------------SCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC
T ss_pred ------------cccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC
Confidence 1123566667777777766655443222 24566666666665554433 44555666666666665
Q ss_pred cceecccCCCccccccCCCccEEeeccCC
Q 039180 688 VDKIWHYNLLPFMLSRFQSLTRLIVRSCP 716 (790)
Q Consensus 688 l~~l~~~~~~~~~~~~l~~L~~L~L~~~~ 716 (790)
++.+ ++..+..+++|+.|+|++|+
T Consensus 267 l~~~-----~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 267 LTLL-----PHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCCC-----CTTTTSSCTTCCEEECCSSC
T ss_pred CCcc-----ChhHhccccCCCEEEcCCCC
Confidence 5543 33344556666666666654
No 42
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.87 E-value=6.8e-22 Score=218.81 Aligned_cols=242 Identities=20% Similarity=0.271 Sum_probs=157.8
Q ss_pred ceeEEEeecccccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCC-Chhhhhccccceeec
Q 039180 453 KYLAISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSL-PSSIYLLVNLQTLCL 531 (790)
Q Consensus 453 ~l~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L 531 (790)
....+...+..+..+|..+. ++++.|.+. +|.+. .++...|.++++|++|+|++|.+..+ |..|..+++|++|+|
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~-~n~i~--~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP-SNTRYLNLM-ENNIQ--MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC-TTCSEEECC-SSCCC--EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEECCCCcCccCCCCC-CCccEEECc-CCcCc--eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 34567777777777776442 344554443 33444 45555567777777777777777755 466777777777777
Q ss_pred cCccccccchhhhhccCcccEEeccCCCCcccch-hhhcccccceecCCccccccccCchhhccccccceEecccCCccc
Q 039180 532 DQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPK-ALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEW 610 (790)
Q Consensus 532 ~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 610 (790)
++|.++.+.+..++.+++|++|+|++|.++.+|. .+.++++|++|++++|..++.++...+.++++|++|++++|.+..
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence 7777777755557777777777777777776654 466777777777777667777776667777777777777776631
Q ss_pred hhhcccccccccccccccCCCCCcEEEEEecCCCCCCccc--cccccceeEEEecCCCCCCC-ccccCCccCeeecccee
Q 039180 611 EVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESF--LTQKLERFKISIGNESFMPS-QSVELPNLEALELCAIN 687 (790)
Q Consensus 611 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 687 (790)
...+..+++|+.|++++|.+..++... .+++|+.|++++|.+..... .+..+++|+.|+|++|.
T Consensus 211 -------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 211 -------------MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp -------------CCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred -------------cccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc
Confidence 124566777777777777765553322 25666666666666655433 45556666666766666
Q ss_pred cceecccCCCccccccCCCccEEeeccCC
Q 039180 688 VDKIWHYNLLPFMLSRFQSLTRLIVRSCP 716 (790)
Q Consensus 688 l~~l~~~~~~~~~~~~l~~L~~L~L~~~~ 716 (790)
++.+ ++..+..+++|+.|+|++|+
T Consensus 278 l~~~-----~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 278 LSSL-----PHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CSCC-----CTTSSTTCTTCCEEECCSSC
T ss_pred CCcc-----ChHHhccccCCCEEEccCCC
Confidence 6543 34445566666666666665
No 43
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=9.8e-22 Score=222.07 Aligned_cols=136 Identities=17% Similarity=0.220 Sum_probs=96.3
Q ss_pred cCCccccCCCcccccceeEEEeecccccCCCC-cc-CccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccC
Q 039180 438 RNKNMWEWPNPDALKKYLAISLINSRINDIPE-GL-ESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSS 515 (790)
Q Consensus 438 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~-~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~ 515 (790)
++..+..+|. ..+.+++++++++|.+..+++ .+ .++++++|.+.++. +. .+++..|.++++|++|++++|.++.
T Consensus 8 s~n~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~--~~~~~~~~~l~~L~~L~Ls~N~l~~ 83 (520)
T 2z7x_B 8 SKNGLIHVPK-DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNR-IQ--YLDISVFKFNQELEYLDLSHNKLVK 83 (520)
T ss_dssp TTSCCSSCCC-SCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC-CC--EEEGGGGTTCTTCCEEECCSSCCCE
T ss_pred CCCCcccccc-cccccccEEECCCCcccccChhhccccccccEEecCCCc-cC--CcChHHhhcccCCCEEecCCCceee
Confidence 3334444443 234789999999998888764 33 56777777665554 44 4655567889999999999998888
Q ss_pred CChhhhhccccceeeccCcccccc-chhhhhccCcccEEeccCCCCcccchhhhccccc--ceecCCcc
Q 039180 516 LPSSIYLLVNLQTLCLDQSILRDI-DIAIIGKLKNLKILSFVRSDIVQLPKALGELTKL--RLSDLTDC 581 (790)
Q Consensus 516 lp~~~~~l~~L~~L~L~~~~l~~l-~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L--~~L~l~~~ 581 (790)
+|.. .+++|++|+|++|.++++ .|..++++++|++|++++|.++. ..+..+++| ++|++++|
T Consensus 84 lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n 148 (520)
T 2z7x_B 84 ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLG 148 (520)
T ss_dssp EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEEC
T ss_pred cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecc
Confidence 8776 788899999999988763 36888888889888888887764 234444455 55555554
No 44
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.86 E-value=9.6e-23 Score=214.24 Aligned_cols=268 Identities=13% Similarity=0.095 Sum_probs=204.9
Q ss_pred ccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccE
Q 039180 473 SAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKI 552 (790)
Q Consensus 473 ~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~ 552 (790)
.+++++|.+.++ .+. .++...|..+++|++|++++|.+..++. +..+++|++|++++|.++++ + .+++|++
T Consensus 33 ~~~L~~L~L~~n-~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l-~----~~~~L~~ 103 (317)
T 3o53_A 33 AWNVKELDLSGN-PLS--QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL-L----VGPSIET 103 (317)
T ss_dssp GGGCSEEECTTS-CCC--CCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEE-E----ECTTCCE
T ss_pred CCCCCEEECcCC-ccC--cCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccc-c----CCCCcCE
Confidence 345666555544 444 4676677899999999999998886654 88899999999999998876 3 4488999
Q ss_pred EeccCCCCcccchhhhcccccceecCCccccccccCchhhccccccceEecccCCccchhhcccccccccccccc-cCCC
Q 039180 553 LSFVRSDIVQLPKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDEL-MNLP 631 (790)
Q Consensus 553 L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l-~~l~ 631 (790)
|++++|.++.++.. .+++|++|++++| .++.+++..++.+++|++|++++|.+.. ..+..+ ..++
T Consensus 104 L~l~~n~l~~~~~~--~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~~l~ 169 (317)
T 3o53_A 104 LHAANNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDT-----------VNFAELAASSD 169 (317)
T ss_dssp EECCSSCCSEEEEC--CCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCE-----------EEGGGGGGGTT
T ss_pred EECCCCccCCcCcc--ccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCc-----------ccHHHHhhccC
Confidence 99999998877643 4788999999998 6777777668889999999999998742 123334 4678
Q ss_pred CCcEEEEEecCCCCCCccccccccceeEEEecCCCCCCCccccCCccCeeeccceecceecccCCCccccccCCCccEEe
Q 039180 632 WLTTLEIDVKNDSILPESFLTQKLERFKISIGNESFMPSQSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLI 711 (790)
Q Consensus 632 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~ 711 (790)
+|+.|++++|.+..++....+++|+.|++++|.+...+..+..+++|+.|++++|.++.+ |..+..+++|+.|+
T Consensus 170 ~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l------~~~~~~l~~L~~L~ 243 (317)
T 3o53_A 170 TLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI------EKALRFSQNLEHFD 243 (317)
T ss_dssp TCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEE------CTTCCCCTTCCEEE
T ss_pred cCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccch------hhHhhcCCCCCEEE
Confidence 999999999988877777678899999999999888777777889999999999988865 55578889999999
Q ss_pred eccCCcccccchhHHHhccccccEEeeccCchhhhHhhcCCCCCCCCcccCCccceeeccccccccc
Q 039180 712 VRSCPKLKYIFSASMIQNFELLRELSIADCRGLREIISKDRADHVTPCFVFPQMTTLRLEILPELKC 778 (790)
Q Consensus 712 L~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~ 778 (790)
+++|+..... ....+..+++|+.|++.++..++........ .+.+....-..|..|..
T Consensus 244 l~~N~~~~~~-~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~--------~~~~~~~~~~cc~~l~~ 301 (317)
T 3o53_A 244 LRGNGFHCGT-LRDFFSKNQRVQTVAKQTVKKLTGQNEEECT--------VPTLGHYGAYCCEDLPA 301 (317)
T ss_dssp CTTCCCBHHH-HHHHHHTCHHHHHHHHHHHHHHHSSSSCCCS--------STTCEEETTEEEBCCTT
T ss_pred ccCCCccCcC-HHHHHhccccceEEECCCchhccCCchhccC--------CCceecccceeeccCCh
Confidence 9999654232 2456788899999999888777665443332 45555555566777765
No 45
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=1.6e-21 Score=227.87 Aligned_cols=296 Identities=16% Similarity=0.175 Sum_probs=218.2
Q ss_pred eEEEeecccccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCC-ChhhhhccccceeeccC
Q 039180 455 LAISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSL-PSSIYLLVNLQTLCLDQ 533 (790)
Q Consensus 455 ~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~~ 533 (790)
+.++.+++.+..+|..+. +++++|.+.+ +.+. .+|...|.++++|++|++++|.+..+ |..++++++|++|+|++
T Consensus 7 ~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~-n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 82 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP-TNITVLNLTH-NQLR--RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82 (680)
T ss_dssp SEEECCSSCCSSCCSCSC-TTCSEEECCS-SCCC--CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS
T ss_pred CeeECCCCCccccccccC-CCCcEEECCC-CCCC--CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC
Confidence 457888888999997653 5666665554 4555 58888789999999999999999876 78899999999999999
Q ss_pred ccccccchhhhhccCcccEEeccCCCCcccc-hhhhcccccceecCCccccccccCchhhccccccceEecccCCccchh
Q 039180 534 SILRDIDIAIIGKLKNLKILSFVRSDIVQLP-KALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEV 612 (790)
Q Consensus 534 ~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 612 (790)
|.++.+.+..|+++++|++|++++|.++.+| ..++++++|++|++++| .+...++..++++++|++|++++|.+....
T Consensus 83 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 161 (680)
T 1ziw_A 83 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQALK 161 (680)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCCCBC
T ss_pred CccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCCcccccC
Confidence 9999985567999999999999999999776 56899999999999998 667677777899999999999999874221
Q ss_pred hccccccccccccc--ccCCCCCcEEEEEecCCCCCCcccc-----------------------------ccccceeEEE
Q 039180 613 ERANSERSNSSLDE--LMNLPWLTTLEIDVKNDSILPESFL-----------------------------TQKLERFKIS 661 (790)
Q Consensus 613 ~~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~-----------------------------~~~L~~L~l~ 661 (790)
+.. ...+++|+.|++++|.+..++.... .++|+.|+++
T Consensus 162 -----------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~ 230 (680)
T 1ziw_A 162 -----------SEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230 (680)
T ss_dssp -----------HHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECT
T ss_pred -----------HHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEcc
Confidence 222 2245788888888887665543211 1567777777
Q ss_pred ecCCCCCCC-ccccCC--ccCeeeccceecceecccCCCccccccCCCccEEeeccCCcccccchhHHHhccccccEEee
Q 039180 662 IGNESFMPS-QSVELP--NLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFELLRELSI 738 (790)
Q Consensus 662 ~~~~~~~~~-~~~~l~--~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l 738 (790)
+|.+..... .+..++ +|+.|++++|.++.+ +|..++.+++|+.|++++|. +..++ ...+.++++|+.|++
T Consensus 231 ~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L 303 (680)
T 1ziw_A 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV-----GNDSFAWLPQLEYFFLEYNN-IQHLF-SHSLHGLFNVRYLNL 303 (680)
T ss_dssp TSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECCSCC-BSEEC-TTTTTTCTTCCEEEC
T ss_pred CCcccccChhHhhccCcCCCCEEECCCCCcCcc-----CcccccCcccccEeeCCCCc-cCccC-hhhhcCCCCccEEec
Confidence 777665433 444444 499999999988765 45668889999999999994 55543 245788999999999
Q ss_pred ccCchhhhHhhcCCCC-CCCCcccCCccceeecccc
Q 039180 739 ADCRGLREIISKDRAD-HVTPCFVFPQMTTLRLEIL 773 (790)
Q Consensus 739 ~~c~~l~~~~~~~~~~-~~~~~~~~p~L~~L~l~~c 773 (790)
+++..-..+....... .......+++|++|+++++
T Consensus 304 ~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n 339 (680)
T 1ziw_A 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339 (680)
T ss_dssp TTCBCCC------CCEECTTTTTTCTTCCEEECCSC
T ss_pred cchhhhcccccccccccChhhcccCCCCCEEECCCC
Confidence 8753221111000000 0002235889999987653
No 46
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=1.2e-21 Score=209.45 Aligned_cols=270 Identities=18% Similarity=0.221 Sum_probs=210.2
Q ss_pred ecccCCCCCCCCCChhhhccCCceEEEEecCccccCCCh-hhhhccccceeeccCccccccchhhhhccCcccEEeccCC
Q 039180 480 LMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLPS-SIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRS 558 (790)
Q Consensus 480 ~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~ 558 (790)
...+++.+. .+|..++ ++|++|++++|.++.+|. .+.++++|++|++++|.++++.|..++++++|++|++++|
T Consensus 36 c~~~~~~l~--~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 36 CKGSSGSLN--SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp EECCSTTCS--SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred eeCCCCCcc--ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence 444556666 7888654 589999999999998865 7999999999999999999987788999999999999999
Q ss_pred CCcccchh-hhcccccceecCCccccccccCc-hhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEE
Q 039180 559 DIVQLPKA-LGELTKLRLSDLTDCFHLKVIAP-NVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTL 636 (790)
Q Consensus 559 ~l~~lp~~-l~~l~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 636 (790)
.++.+|.. +.++++|++|++++| .++.+|. ..+.++++|++|++++|... ....+..++.+++|+.|
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~----------~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 111 YLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTF----------TKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp CCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSC----------CEECTTTTTTCCEEEEE
T ss_pred cCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccc----------cccCHHHccCCCCCCEE
Confidence 99998877 889999999999998 7778877 56899999999999998532 12234568889999999
Q ss_pred EEEecCCCCC-Cccc-cccccceeEEEecCCCCCCC-ccccCCccCeeeccceecceecccCCCccccccCCCccEEeec
Q 039180 637 EIDVKNDSIL-PESF-LTQKLERFKISIGNESFMPS-QSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVR 713 (790)
Q Consensus 637 ~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~ 713 (790)
++++|.+... |..+ .+++|+.|++++|.+...+. ....+++|+.|++++|.++.+...... .....+.++.++++
T Consensus 180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~--~~~~~~~l~~l~L~ 257 (353)
T 2z80_A 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS--TGETNSLIKKFTFR 257 (353)
T ss_dssp EEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------CCCCCCEEEEE
T ss_pred ECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc--cccccchhhccccc
Confidence 9999987665 3333 37899999999999866555 344589999999999988764211111 13456788899998
Q ss_pred cCCcccccc---hhHHHhccccccEEeeccCchhhhHhhcCCCCCCCCcccCCccceeeccccccc
Q 039180 714 SCPKLKYIF---SASMIQNFELLRELSIADCRGLREIISKDRADHVTPCFVFPQMTTLRLEILPEL 776 (790)
Q Consensus 714 ~~~~l~~~~---~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L 776 (790)
++. +.+.. .+..+..+++|+.|++++| .++.++.... ..+++|++|+++++|--
T Consensus 258 ~~~-l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~-------~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 258 NVK-ITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIF-------DRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp SCB-CCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTT-------TTCTTCCEEECCSSCBC
T ss_pred ccc-ccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHH-------hcCCCCCEEEeeCCCcc
Confidence 884 43321 1245778999999999998 5666665431 24899999999987643
No 47
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.86 E-value=2.1e-21 Score=221.29 Aligned_cols=121 Identities=23% Similarity=0.301 Sum_probs=92.4
Q ss_pred eeEEEeecccccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCC-Chhhhhccccceeecc
Q 039180 454 YLAISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSL-PSSIYLLVNLQTLCLD 532 (790)
Q Consensus 454 l~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~ 532 (790)
.++++++++.+..+|..+. +++++|.+.+ |.+. .+++..|.++++|++|++++|.++.+ |..|..+++|++|+|+
T Consensus 33 ~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~-N~i~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP-PRTKALSLSQ-NSIS--ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC-TTCCEEECCS-SCCC--CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred CcEEEcCCCCCccCCCCCC-CCcCEEECCC-CCcc--ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 3778888888888887553 5555555444 4444 57766678888888888888888866 6778888888888888
Q ss_pred CccccccchhhhhccCcccEEeccCCCCcccc--hhhhcccccceecCCcc
Q 039180 533 QSILRDIDIAIIGKLKNLKILSFVRSDIVQLP--KALGELTKLRLSDLTDC 581 (790)
Q Consensus 533 ~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp--~~l~~l~~L~~L~l~~~ 581 (790)
+|.++.+ |.. .+++|++|++++|.++.+| ..++++++|++|++++|
T Consensus 109 ~N~l~~l-p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n 156 (562)
T 3a79_B 109 HNRLQNI-SCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA 156 (562)
T ss_dssp TSCCCEE-CSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS
T ss_pred CCcCCcc-Ccc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC
Confidence 8888876 555 7888888888888887654 67888888888888887
No 48
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=9.1e-22 Score=225.21 Aligned_cols=121 Identities=21% Similarity=0.319 Sum_probs=74.5
Q ss_pred cccceeEEEeecccccCCCCc-c-CccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCCCh-hhhhcccc
Q 039180 450 ALKKYLAISLINSRINDIPEG-L-ESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLPS-SIYLLVNL 526 (790)
Q Consensus 450 ~~~~l~~l~l~~~~~~~l~~~-~-~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp~-~~~~l~~L 526 (790)
....++++++++|.+..+++. + .++++++|.+.++. +. .+++..|.++++|++|++++|.++.+|. .++++++|
T Consensus 50 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~--~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 126 (570)
T 2z63_A 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQ--SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (570)
T ss_dssp TCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CC--EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred CCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc-CC--ccCHhhhcCccccccccccccccccCCCccccccccc
Confidence 345677777777777666532 2 45566666555443 33 3555556677777777777777766643 46677777
Q ss_pred ceeeccCcccccc-chhhhhccCcccEEeccCCCCcccc-hhhhccccc
Q 039180 527 QTLCLDQSILRDI-DIAIIGKLKNLKILSFVRSDIVQLP-KALGELTKL 573 (790)
Q Consensus 527 ~~L~L~~~~l~~l-~p~~i~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L 573 (790)
++|++++|.++.. .|..++++++|++|++++|.++.++ ..++.+++|
T Consensus 127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred cEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 7777777776652 2666777777777777777666443 334444444
No 49
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=1.3e-21 Score=225.45 Aligned_cols=293 Identities=13% Similarity=0.130 Sum_probs=200.8
Q ss_pred ceeEEEeecccccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCC-Chhhhhccccceeec
Q 039180 453 KYLAISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSL-PSSIYLLVNLQTLCL 531 (790)
Q Consensus 453 ~l~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L 531 (790)
.-+.+..+++.+..+|..+. +++++|.+.+ +.+. .++...|.++++|++|++++|.++.+ |..|+++++|++|+|
T Consensus 12 ~~~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~-n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~L 87 (606)
T 3vq2_A 12 PNITYQCMDQKLSKVPDDIP-SSTKNIDLSF-NPLK--ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLIL 87 (606)
T ss_dssp TTTEEECTTSCCSSCCTTSC-TTCCEEECTT-SCCC--EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCceEccCCCcccCCCCCC-CCcCEEECCC-CCcC--EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeEC
Confidence 34568888899999998653 5666665554 4555 57777789999999999999999977 678999999999999
Q ss_pred cCccccccchhhhhccCcccEEeccCCCCcccc-hhhhcccccceecCCccccccc--cCchhhccccccceEecccCCc
Q 039180 532 DQSILRDIDIAIIGKLKNLKILSFVRSDIVQLP-KALGELTKLRLSDLTDCFHLKV--IAPNVISSLTRLEELYMGNCPI 608 (790)
Q Consensus 532 ~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~l~~~~~l~~--~~~~~l~~l~~L~~L~l~~~~~ 608 (790)
++|.++.+.|..|+++++|++|++++|.++.+| ..++++++|++|++++| .+.. +|. .++++++|++|++++|.+
T Consensus 88 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~-~~~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 88 TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPA-YFSNLTNLVHVDLSYNYI 165 (606)
T ss_dssp TTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCG-GGGTCTTCCEEECCSSCC
T ss_pred CCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCC-cccceechH-hHhhcCCCCEEEccCCcc
Confidence 999999988999999999999999999998776 67999999999999998 5553 454 489999999999999987
Q ss_pred cchhhcc-----------------cccccccccccccCCCCCcEEEEEecCCCC--------------------------
Q 039180 609 EWEVERA-----------------NSERSNSSLDELMNLPWLTTLEIDVKNDSI-------------------------- 645 (790)
Q Consensus 609 ~~~~~~~-----------------~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-------------------------- 645 (790)
....+.. .+.. ...+.......+|+.|++++|....
T Consensus 166 ~~~~~~~~~~l~~L~~~l~~L~l~~n~l-~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 244 (606)
T 3vq2_A 166 QTITVNDLQFLRENPQVNLSLDMSLNPI-DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244 (606)
T ss_dssp CEECTTTTHHHHHCTTCCCEEECTTCCC-CEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTS
T ss_pred eecChhhhhhhhccccccceeeccCCCc-ceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccC
Confidence 5432210 0000 1111122222367777777664320
Q ss_pred ---------------------------------CCccccccccceeEEEecCCCCCCCccccCCccCeeeccceecceec
Q 039180 646 ---------------------------------LPESFLTQKLERFKISIGNESFMPSQSVELPNLEALELCAINVDKIW 692 (790)
Q Consensus 646 ---------------------------------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~ 692 (790)
.+....+++|+.|+++++.+...+ .+..+++|+.|++++|.+..+
T Consensus 245 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~l- 322 (606)
T 3vq2_A 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQF- 322 (606)
T ss_dssp CCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSC-
T ss_pred CcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCccc-
Confidence 001111355666666666655554 455566677777777665443
Q ss_pred ccCCCccccccCCCccEEeeccCCcccccchhHHHhccccccEEeeccCchhhhH---hhcCCCCCCCCcccCCccceee
Q 039180 693 HYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFELLRELSIADCRGLREI---ISKDRADHVTPCFVFPQMTTLR 769 (790)
Q Consensus 693 ~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~---~~~~~~~~~~~~~~~p~L~~L~ 769 (790)
|. + .+++|+.|++++|..+... .+..+++|+.|++++|. +..+ +... ..+++|++|+
T Consensus 323 -----p~-~-~l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n~-l~~~~~~~~~~--------~~~~~L~~L~ 382 (606)
T 3vq2_A 323 -----PT-L-DLPFLKSLTLTMNKGSISF----KKVALPSLSYLDLSRNA-LSFSGCCSYSD--------LGTNSLRHLD 382 (606)
T ss_dssp -----CC-C-CCSSCCEEEEESCSSCEEC----CCCCCTTCCEEECCSSC-EEEEEECCHHH--------HCCSCCCEEE
T ss_pred -----cc-C-CCCccceeeccCCcCccch----hhccCCCCCEEECcCCc-cCCCcchhhhh--------ccCCcccEeE
Confidence 32 2 6677777777777544443 24467777777777763 3322 1111 2478888888
Q ss_pred ccccc
Q 039180 770 LEILP 774 (790)
Q Consensus 770 l~~c~ 774 (790)
+++|.
T Consensus 383 L~~n~ 387 (606)
T 3vq2_A 383 LSFNG 387 (606)
T ss_dssp CCSCS
T ss_pred CCCCc
Confidence 77653
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=1.1e-21 Score=205.29 Aligned_cols=243 Identities=21% Similarity=0.204 Sum_probs=185.2
Q ss_pred eEEEeecccccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCC---Chhhhhccccceeec
Q 039180 455 LAISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSL---PSSIYLLVNLQTLCL 531 (790)
Q Consensus 455 ~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~l---p~~~~~l~~L~~L~L 531 (790)
+.+...++.+..+|..+. +++++|.+. ++.+. .+|..+|.++++|++|++++|.++.+ |..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~~ip~~~~-~~l~~L~L~-~n~l~--~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP-SSATRLELE-SNKLQ--SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCSSCCSCCC-TTCCEEECC-SSCCC--CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcccCCCCCC-CCCCEEECC-CCccC--ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 357777777888887542 455655544 44455 68888788999999999999988754 677888999999999
Q ss_pred cCccccccchhhhhccCcccEEeccCCCCcccch--hhhcccccceecCCccccccccCchhhccccccceEecccCCcc
Q 039180 532 DQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPK--ALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIE 609 (790)
Q Consensus 532 ~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~--~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 609 (790)
++|.++.+ |..+..+++|++|++++|.++.++. .+..+++|++|++++| .+...++..++++++|++|++++|.+.
T Consensus 86 s~n~i~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 86 SFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CSCSEEEE-EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS-CCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCccccC-hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC-cCCccchhhcccCcCCCEEECCCCccc
Confidence 99998887 7778899999999999998887764 6888999999999998 566666666888999999999998763
Q ss_pred chhhcccccccccccccccCCCCCcEEEEEecCCCCCCc-cc-cccccceeEEEecCCCCCCC-ccccCCccCeeeccce
Q 039180 610 WEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPE-SF-LTQKLERFKISIGNESFMPS-QSVELPNLEALELCAI 686 (790)
Q Consensus 610 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~ 686 (790)
. ...+..+..+++|+.|++++|.+..++. .+ .+++|+.|++++|.+...+. .+..+++|+.|++++|
T Consensus 164 ~----------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 164 E----------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp G----------GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS
T ss_pred c----------ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC
Confidence 1 1245677888899999999888766633 32 36788888888888776655 5567788888888888
Q ss_pred ecceecccCCCccccccCC-CccEEeeccCCcc
Q 039180 687 NVDKIWHYNLLPFMLSRFQ-SLTRLIVRSCPKL 718 (790)
Q Consensus 687 ~l~~l~~~~~~~~~~~~l~-~L~~L~L~~~~~l 718 (790)
.++.. .|..+..++ +|+.|+|++|+.-
T Consensus 234 ~l~~~-----~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 234 HIMTS-----KKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCCBC-----SSSSCCCCCTTCCEEECTTCCEE
T ss_pred CCccc-----CHHHHHhhhccCCEEEccCCCee
Confidence 77643 445566664 8888888888643
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=1.6e-21 Score=214.96 Aligned_cols=238 Identities=18% Similarity=0.221 Sum_probs=200.1
Q ss_pred ccCCCCCCCCCChhhhccCCceEEEEecCccccCC-ChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCC
Q 039180 482 IPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSL-PSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDI 560 (790)
Q Consensus 482 ~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l 560 (790)
..+..+. .+|..+. +++++|+|++|.+..+ +..|.++++|++|+|++|.++.+.+..+.++++|++|+|++|.+
T Consensus 50 c~~~~l~--~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 50 CVRKNLR--EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp CCSCCCS--SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred eCCCCcC--cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 3344444 6887653 6889999999999876 57889999999999999999998788999999999999999999
Q ss_pred cccch-hhhcccccceecCCccccccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEE
Q 039180 561 VQLPK-ALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEID 639 (790)
Q Consensus 561 ~~lp~-~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 639 (790)
+.+|. .+..+++|++|++++| .++.+++..+.++++|++|++++|..... .....+..+++|+.|+++
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~----------i~~~~~~~l~~L~~L~L~ 193 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSY----------ISEGAFEGLSNLRYLNLA 193 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCE----------ECTTTTTTCSSCCEEECT
T ss_pred CeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcce----------eCcchhhcccccCeecCC
Confidence 98876 5889999999999998 68888887899999999999998654321 123467889999999999
Q ss_pred ecCCCCCCccccccccceeEEEecCCCCCCC-ccccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCCcc
Q 039180 640 VKNDSILPESFLTQKLERFKISIGNESFMPS-QSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKL 718 (790)
Q Consensus 640 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l 718 (790)
+|.+..+|....+++|+.|++++|.+...+. .+..+++|+.|++++|.++.+ .+..+..+++|+.|+|++| .+
T Consensus 194 ~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~N-~l 267 (440)
T 3zyj_A 194 MCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI-----ERNAFDNLQSLVEINLAHN-NL 267 (440)
T ss_dssp TSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-----CTTSSTTCTTCCEEECTTS-CC
T ss_pred CCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEE-----ChhhhcCCCCCCEEECCCC-CC
Confidence 9999988877778999999999998887644 778899999999999998876 4566888999999999999 67
Q ss_pred cccchhHHHhccccccEEeeccCc
Q 039180 719 KYIFSASMIQNFELLRELSIADCR 742 (790)
Q Consensus 719 ~~~~~~~~~~~l~~L~~L~l~~c~ 742 (790)
+.++. ..+..+++|+.|++++++
T Consensus 268 ~~~~~-~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 268 TLLPH-DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCCCT-TTTSSCTTCCEEECCSSC
T ss_pred CccCh-hHhccccCCCEEEcCCCC
Confidence 77653 457789999999998865
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=2.4e-21 Score=214.32 Aligned_cols=238 Identities=18% Similarity=0.198 Sum_probs=197.9
Q ss_pred ccCCCCCCCCCChhhhccCCceEEEEecCccccCC-ChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCC
Q 039180 482 IPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSL-PSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDI 560 (790)
Q Consensus 482 ~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l 560 (790)
..+..+. .+|..+ .++|++|+|++|.++.+ |..|.++++|++|+|++|.++.+.|..+.++++|++|+|++|.+
T Consensus 61 c~~~~l~--~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 61 CTRRGLS--EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp CCSSCCS--SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcC--ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 3344444 678754 36899999999999876 77899999999999999999998778899999999999999999
Q ss_pred cccchh-hhcccccceecCCccccccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEE
Q 039180 561 VQLPKA-LGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEID 639 (790)
Q Consensus 561 ~~lp~~-l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 639 (790)
+.+|.. +..+++|++|++++| .+..+++..+.++++|++|++++|.....+ ....+..+++|+.|+++
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i----------~~~~~~~l~~L~~L~L~ 204 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYI----------SEGAFEGLFNLKYLNLG 204 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEE----------CTTTTTTCTTCCEEECT
T ss_pred CccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCcccc----------ChhhccCCCCCCEEECC
Confidence 988765 788999999999998 688888878899999999999986543211 23457788999999999
Q ss_pred ecCCCCCCccccccccceeEEEecCCCCCCC-ccccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCCcc
Q 039180 640 VKNDSILPESFLTQKLERFKISIGNESFMPS-QSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKL 718 (790)
Q Consensus 640 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l 718 (790)
+|.+..+|....+++|+.|++++|.+...+. .+..+++|+.|++++|.++.+ .|..+..+++|+.|+|++| .+
T Consensus 205 ~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~N-~l 278 (452)
T 3zyi_A 205 MCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI-----ERNAFDGLASLVELNLAHN-NL 278 (452)
T ss_dssp TSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECCSS-CC
T ss_pred CCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceE-----CHHHhcCCCCCCEEECCCC-cC
Confidence 9998888877678999999999999887654 678899999999999988865 4566888999999999999 67
Q ss_pred cccchhHHHhccccccEEeeccCc
Q 039180 719 KYIFSASMIQNFELLRELSIADCR 742 (790)
Q Consensus 719 ~~~~~~~~~~~l~~L~~L~l~~c~ 742 (790)
+.++. ..+..+++|+.|++++++
T Consensus 279 ~~~~~-~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 279 SSLPH-DLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp SCCCT-TSSTTCTTCCEEECCSSC
T ss_pred CccCh-HHhccccCCCEEEccCCC
Confidence 77653 456789999999998875
No 53
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=1.5e-21 Score=222.31 Aligned_cols=156 Identities=19% Similarity=0.204 Sum_probs=112.2
Q ss_pred ccccceeEEEeecccccCCCC-cc-CccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccC--CChhhhhcc
Q 039180 449 DALKKYLAISLINSRINDIPE-GL-ESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSS--LPSSIYLLV 524 (790)
Q Consensus 449 ~~~~~l~~l~l~~~~~~~l~~-~~-~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~--lp~~~~~l~ 524 (790)
....+++.+++++|.+..+++ .+ ..+++++|.+.++ .+. .+++..|.++++|++|++++|.+.. .|..+++++
T Consensus 47 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 47 RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLS--SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123 (549)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCC--SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT
T ss_pred hcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccC--ccCHHHhccCCCCcEEECCCCcccccchhhhhhccC
Confidence 345789999999999877764 33 5566776665554 444 5777777899999999999999884 467888999
Q ss_pred ccceeeccCcc-ccccchhhhhccCcccEEeccCCCCc-ccchhhhcccccceecCCccccccccCchhhccccccceEe
Q 039180 525 NLQTLCLDQSI-LRDIDIAIIGKLKNLKILSFVRSDIV-QLPKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELY 602 (790)
Q Consensus 525 ~L~~L~L~~~~-l~~l~p~~i~~l~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~ 602 (790)
+|++|++++|. +..+.+..++++++|++|++++|.++ ..|..++.+++|++|++++| ....+|...++.+++|++|+
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~ 202 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS-ESAFLLEIFADILSSVRYLE 202 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS-BSTTHHHHHHHSTTTBSEEE
T ss_pred CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC-cccccchhhHhhcccccEEE
Confidence 99999999998 66664567888999999999999887 46777777777777766665 33444433334455555555
Q ss_pred cccCCc
Q 039180 603 MGNCPI 608 (790)
Q Consensus 603 l~~~~~ 608 (790)
+++|.+
T Consensus 203 L~~n~l 208 (549)
T 2z81_A 203 LRDTNL 208 (549)
T ss_dssp EESCBC
T ss_pred ccCCcc
Confidence 555443
No 54
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=1.3e-20 Score=207.75 Aligned_cols=284 Identities=16% Similarity=0.108 Sum_probs=214.4
Q ss_pred ccccCCCcccccceeEEEeecccccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCCChhh
Q 039180 441 NMWEWPNPDALKKYLAISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLPSSI 520 (790)
Q Consensus 441 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp~~~ 520 (790)
.+...+.-....+++.+++++|.+..+| ....++++.|.+.++ .+. .+| +.++++|++|++++|.++.+| +
T Consensus 53 ~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N-~l~--~~~---~~~l~~L~~L~L~~N~l~~l~--~ 123 (457)
T 3bz5_A 53 SITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSN-KLT--NLD---VTPLTKLTYLNCDTNKLTKLD--V 123 (457)
T ss_dssp CCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSS-CCS--CCC---CTTCTTCCEEECCSSCCSCCC--C
T ss_pred CcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCC-CCc--eee---cCCCCcCCEEECCCCcCCeec--C
Confidence 3444444456789999999999999886 446677777776655 455 354 578999999999999999886 8
Q ss_pred hhccccceeeccCccccccchhhhhccCcccEEeccCC-CCcccchhhhcccccceecCCccccccccCchhhccccccc
Q 039180 521 YLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRS-DIVQLPKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLE 599 (790)
Q Consensus 521 ~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~-~l~~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~ 599 (790)
+.+++|++|++++|.++++ + ++.+++|++|++++| .+..+ .++.+++|++|++++| .++.+| ++.+++|+
T Consensus 124 ~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~~l~---l~~l~~L~ 194 (457)
T 3bz5_A 124 SQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN-KITELD---VSQNKLLN 194 (457)
T ss_dssp TTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS-CCCCCC---CTTCTTCC
T ss_pred CCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC-ccceec---cccCCCCC
Confidence 9999999999999999986 4 889999999999999 55566 3788999999999998 777776 78899999
Q ss_pred eEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCccccccccceeEEEecCCCCCCCccccCCccC
Q 039180 600 ELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFLTQKLERFKISIGNESFMPSQSVELPNLE 679 (790)
Q Consensus 600 ~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~ 679 (790)
.|++++|.+.. . .++.+++|+.|++++|.+..+| ...+++|+.|++++|.+...+ ...+++|+
T Consensus 195 ~L~l~~N~l~~-------------~-~l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~ 257 (457)
T 3bz5_A 195 RLNCDTNNITK-------------L-DLNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELD--VSTLSKLT 257 (457)
T ss_dssp EEECCSSCCSC-------------C-CCTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTTCC
T ss_pred EEECcCCcCCe-------------e-ccccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCcCCCcC--HHHCCCCC
Confidence 99999998741 1 3778899999999999988887 445899999999999988765 34567777
Q ss_pred eeeccceecceeccc-----CCCccccccCCCccEEeeccCCcccccchhH------HHhccccccEEeeccCchhhhHh
Q 039180 680 ALELCAINVDKIWHY-----NLLPFMLSRFQSLTRLIVRSCPKLKYIFSAS------MIQNFELLRELSIADCRGLREII 748 (790)
Q Consensus 680 ~L~l~~~~l~~l~~~-----~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~------~~~~l~~L~~L~l~~c~~l~~~~ 748 (790)
.|++++++++.+.-. +..| .+.+++|+.|++++|+.+..++... .+.++++|+.|+++++ .++.+
T Consensus 258 ~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l- 333 (457)
T 3bz5_A 258 TLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTEL- 333 (457)
T ss_dssp EEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCC-
T ss_pred EEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-ccccc-
Confidence 666666655543210 1112 5678999999999998777664210 1334556666666654 23332
Q ss_pred hcCCCCCCCCcccCCccceeeccc
Q 039180 749 SKDRADHVTPCFVFPQMTTLRLEI 772 (790)
Q Consensus 749 ~~~~~~~~~~~~~~p~L~~L~l~~ 772 (790)
....+++|+.|++++
T Consensus 334 ---------~l~~l~~L~~L~l~~ 348 (457)
T 3bz5_A 334 ---------DVSHNTKLKSLSCVN 348 (457)
T ss_dssp ---------CCTTCTTCSEEECCS
T ss_pred ---------ccccCCcCcEEECCC
Confidence 224588888888764
No 55
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=3.3e-21 Score=229.92 Aligned_cols=299 Identities=16% Similarity=0.136 Sum_probs=205.2
Q ss_pred eEEEeecccccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccc-cCC-Chhhhhccccceeecc
Q 039180 455 LAISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLL-SSL-PSSIYLLVNLQTLCLD 532 (790)
Q Consensus 455 ~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~-~~l-p~~~~~l~~L~~L~L~ 532 (790)
+.++.+++.+..+|. ..+++++|.+. +|.+. .+++..|.++++|++|+|++|.. ..+ |..|+++++|++|+|+
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs-~N~i~--~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLS-FNYIR--TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEE-SCCCC--EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECC-CCcCC--ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 467778888999998 34566666554 45555 46556679999999999999954 456 7889999999999999
Q ss_pred CccccccchhhhhccCcccEEeccCCCCcc-cchh--hhcccccceecCCcccccccc-CchhhccccccceEecccCCc
Q 039180 533 QSILRDIDIAIIGKLKNLKILSFVRSDIVQ-LPKA--LGELTKLRLSDLTDCFHLKVI-APNVISSLTRLEELYMGNCPI 608 (790)
Q Consensus 533 ~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~-lp~~--l~~l~~L~~L~l~~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~ 608 (790)
+|.+..+.|..++++++|++|+|++|.++. +|.. ++++++|++|++++| .+..+ ++..++++++|++|++++|.+
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcC
Confidence 999999889999999999999999999984 5655 899999999999998 45554 335689999999999999987
Q ss_pred cchhhcc---------------cccccccccccccCCCC------CcEEEEEecCCCC-CCccc----------------
Q 039180 609 EWEVERA---------------NSERSNSSLDELMNLPW------LTTLEIDVKNDSI-LPESF---------------- 650 (790)
Q Consensus 609 ~~~~~~~---------------~~~~~~~~~~~l~~l~~------L~~L~l~~~~~~~-~~~~~---------------- 650 (790)
....+.. .+......+..++.+++ |+.|++++|.... .+..+
T Consensus 161 ~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~ 240 (844)
T 3j0a_A 161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240 (844)
T ss_dssp CCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCS
T ss_pred CeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccc
Confidence 4322110 01111122222333333 7777777664221 11110
Q ss_pred -----------------------cccccceeEEEecCCCCCCC-ccccCCccCeeeccceecceecccCCCccccccCCC
Q 039180 651 -----------------------LTQKLERFKISIGNESFMPS-QSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQS 706 (790)
Q Consensus 651 -----------------------~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~ 706 (790)
..++|+.|++++|.+...+. .+..+++|+.|++++|.++.+ +|..+..+++
T Consensus 241 ~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-----~~~~~~~l~~ 315 (844)
T 3j0a_A 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI-----ADEAFYGLDN 315 (844)
T ss_dssp SCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEE-----CTTTTTTCSS
T ss_pred ccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCC-----ChHHhcCCCC
Confidence 02456667776666654433 456677777777777776654 3445667777
Q ss_pred ccEEeeccCCcccccchhHHHhccccccEEeeccCchhhhHhhcCCCCCCCCcccCCccceeeccccc
Q 039180 707 LTRLIVRSCPKLKYIFSASMIQNFELLRELSIADCRGLREIISKDRADHVTPCFVFPQMTTLRLEILP 774 (790)
Q Consensus 707 L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~ 774 (790)
|+.|+|++| .++.+.+ ..+.++++|+.|++++| .+..++... ...+++|++|+++++.
T Consensus 316 L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~i~~~~~~~-------~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 316 LQVLNLSYN-LLGELYS-SNFYGLPKVAYIDLQKN-HIAIIQDQT-------FKFLEKLQTLDLRDNA 373 (844)
T ss_dssp CCEEEEESC-CCSCCCS-CSCSSCTTCCEEECCSC-CCCCCCSSC-------SCSCCCCCEEEEETCC
T ss_pred CCEEECCCC-CCCccCH-HHhcCCCCCCEEECCCC-CCCccChhh-------hcCCCCCCEEECCCCC
Confidence 777777777 3444422 34567777777777776 344443321 2347888888887753
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=9.4e-21 Score=214.84 Aligned_cols=235 Identities=16% Similarity=0.148 Sum_probs=110.3
Q ss_pred cceeEEEeecccccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCCChhhhhccccceeec
Q 039180 452 KKYLAISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLPSSIYLLVNLQTLCL 531 (790)
Q Consensus 452 ~~l~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L 531 (790)
.+++.+.+++|.+..+|. ..+++++|.+.++ .+. .+|. .+++|++|++++|.++.+|. .+.+|++|++
T Consensus 61 ~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N-~l~--~lp~----~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA--LPPELRTLEVSGN-QLT--SLPV----LPPGLLELSIFSNPLTHLPA---LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCCSCCCC--CCTTCCEEEECSC-CCS--CCCC----CCTTCCEEEECSCCCCCCCC---CCTTCCEEEC
T ss_pred CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCC-cCC--cCCC----CCCCCCEEECcCCcCCCCCC---CCCCcCEEEC
Confidence 445555555555555444 2333444333322 222 2443 34455555555555554443 3444555555
Q ss_pred cCccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceecCCccccccccCchhhccccccceEecccCCccch
Q 039180 532 DQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWE 611 (790)
Q Consensus 532 ~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 611 (790)
++|.++.+ |.. +++|++|++++|.++.+|. .+.+|+.|++++| .++.+| ..+++|+.|++++|.+..
T Consensus 129 ~~N~l~~l-p~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N-~l~~l~----~~~~~L~~L~Ls~N~l~~- 195 (622)
T 3g06_A 129 FGNQLTSL-PVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNN-QLTSLP----MLPSGLQELSVSDNQLAS- 195 (622)
T ss_dssp CSSCCSCC-CCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCC----CCCTTCCEEECCSSCCSC-
T ss_pred CCCCCCcC-CCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCC-CCCCCc----ccCCCCcEEECCCCCCCC-
Confidence 55554444 321 2445555555555544443 2234445555554 344443 224555555555554421
Q ss_pred hhcccccccccccccccCCCCCcEEEEEecCCCCCCccccccccceeEEEecCCCCCCCccccCCccCeeeccceeccee
Q 039180 612 VERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFLTQKLERFKISIGNESFMPSQSVELPNLEALELCAINVDKI 691 (790)
Q Consensus 612 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l 691 (790)
.+. .+++|+.|++++|.+..+|.. +++|+.|++++|.+...+ ..+++|+.|++++|.++.+
T Consensus 196 -----------l~~---~~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~l 256 (622)
T 3g06_A 196 -----------LPT---LPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSL 256 (622)
T ss_dssp -----------CCC---CCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCC
T ss_pred -----------CCC---ccchhhEEECcCCcccccCCC--CCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcC
Confidence 010 124555555555555554433 355555555555554433 2345555555555555433
Q ss_pred cccCCCccccccCCCccEEeeccCCcccccchhHHHhccccccEEeeccCc
Q 039180 692 WHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFELLRELSIADCR 742 (790)
Q Consensus 692 ~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~ 742 (790)
|. .+++|+.|+|++| .++.+| ..+.++++|+.|++++|+
T Consensus 257 ------p~---~~~~L~~L~Ls~N-~L~~lp--~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 257 ------PM---LPSGLLSLSVYRN-QLTRLP--ESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp ------CC---CCTTCCEEECCSS-CCCSCC--GGGGGSCTTCEEECCSCC
T ss_pred ------Cc---ccccCcEEeCCCC-CCCcCC--HHHhhccccCEEEecCCC
Confidence 21 3455555555555 344442 234555555555555554
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.85 E-value=4.6e-21 Score=200.59 Aligned_cols=238 Identities=18% Similarity=0.151 Sum_probs=175.6
Q ss_pred cccCCCCCCCCCChhhhccCCceEEEEecCccccCCChh-hhhccccceeeccCccccccc--hhhhhccCcccEEeccC
Q 039180 481 MIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLPSS-IYLLVNLQTLCLDQSILRDID--IAIIGKLKNLKILSFVR 557 (790)
Q Consensus 481 ~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp~~-~~~l~~L~~L~L~~~~l~~l~--p~~i~~l~~L~~L~L~~ 557 (790)
..+.+.+. .+|..+ .++|++|++++|.++.+|.. +.++++|++|+|++|.++... |..+..+++|++|++++
T Consensus 13 ~c~~~~l~--~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 13 RCNSKGLT--SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp ECCSSCCS--SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EcCCCCcc--cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 33444455 678754 36899999999999988765 689999999999999987542 57778899999999999
Q ss_pred CCCcccchhhhcccccceecCCccccccccCc-hhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEE
Q 039180 558 SDIVQLPKALGELTKLRLSDLTDCFHLKVIAP-NVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTL 636 (790)
Q Consensus 558 ~~l~~lp~~l~~l~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 636 (790)
|.++.+|..+..+++|++|++++| .+..++. ..+.++++|++|++++|.+. ...+..+..+++|+.|
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~-----------~~~~~~~~~l~~L~~L 155 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTR-----------VAFNGIFNGLSSLEVL 155 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCE-----------ECSTTTTTTCTTCCEE
T ss_pred CccccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCC-----------ccchhhcccCcCCCEE
Confidence 999999988999999999999998 6776665 55889999999999999874 2234567788999999
Q ss_pred EEEecCCCC--CCccc-cccccceeEEEecCCCCCCC-ccccCCccCeeeccceecceecccCCCccccccCCCccEEee
Q 039180 637 EIDVKNDSI--LPESF-LTQKLERFKISIGNESFMPS-QSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIV 712 (790)
Q Consensus 637 ~l~~~~~~~--~~~~~-~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L 712 (790)
++++|.+.. .|..+ .+++|+.|++++|.+...+. .+..+++|+.|++++|.++.+ ++..+..+++|+.|++
T Consensus 156 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-----~~~~~~~l~~L~~L~L 230 (306)
T 2z66_A 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL-----DTFPYKCLNSLQVLDY 230 (306)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBC-----CSGGGTTCTTCCEEEC
T ss_pred ECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCcc-----ChhhccCcccCCEeEC
Confidence 998887543 44433 25677777777777665533 556677777777777766643 3334566777777777
Q ss_pred ccCCcccccchhHHHhccc-cccEEeeccCc
Q 039180 713 RSCPKLKYIFSASMIQNFE-LLRELSIADCR 742 (790)
Q Consensus 713 ~~~~~l~~~~~~~~~~~l~-~L~~L~l~~c~ 742 (790)
++|. +...++ ..+..+| +|+.|++++++
T Consensus 231 ~~N~-l~~~~~-~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 231 SLNH-IMTSKK-QELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TTSC-CCBCSS-SSCCCCCTTCCEEECTTCC
T ss_pred CCCC-CcccCH-HHHHhhhccCCEEEccCCC
Confidence 7773 433322 2344553 77777777654
No 58
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=4e-21 Score=202.45 Aligned_cols=215 Identities=21% Similarity=0.283 Sum_probs=165.9
Q ss_pred ccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceecCCccccccccCchhhccccccceEe
Q 039180 523 LVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELY 602 (790)
Q Consensus 523 l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~ 602 (790)
..++++|+|++|.++.+ |..++++++|++|+|++|.++.+|..++++++|++|++++| .+..+|.. ++++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~-l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQF-PDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPAS-IASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSSC-CSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGG-GGGCTTCCEEE
T ss_pred ccceeEEEccCCCchhc-ChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHH-HhcCcCCCEEE
Confidence 47899999999999877 88888999999999999999999998999999999999998 66777765 88999999999
Q ss_pred cccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCccccccccceeEEEecCCCCCCCccccCCccCeee
Q 039180 603 MGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFLTQKLERFKISIGNESFMPSQSVELPNLEALE 682 (790)
Q Consensus 603 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 682 (790)
+++|.+...++.... .......+..+++|+.|++++|.+..+ +..+..+++|+.|+
T Consensus 157 L~~n~~~~~~p~~~~--~~~~~~~~~~l~~L~~L~L~~n~l~~l----------------------p~~l~~l~~L~~L~ 212 (328)
T 4fcg_A 157 IRACPELTELPEPLA--STDASGEHQGLVNLQSLRLEWTGIRSL----------------------PASIANLQNLKSLK 212 (328)
T ss_dssp EEEETTCCCCCSCSE--EEC-CCCEEESTTCCEEEEEEECCCCC----------------------CGGGGGCTTCCEEE
T ss_pred CCCCCCccccChhHh--hccchhhhccCCCCCEEECcCCCcCcc----------------------hHhhcCCCCCCEEE
Confidence 998776433221000 000111233355555555555554444 33456788999999
Q ss_pred ccceecceecccCCCccccccCCCccEEeeccCCcccccchhHHHhccccccEEeeccCchhhhHhhcCCCCCCCCcccC
Q 039180 683 LCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFELLRELSIADCRGLREIISKDRADHVTPCFVF 762 (790)
Q Consensus 683 l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~ 762 (790)
+++|.++.+ |..++.+++|+.|++++|.....++ ..+.++++|+.|++++|..+..++..... +
T Consensus 213 L~~N~l~~l------~~~l~~l~~L~~L~Ls~n~~~~~~p--~~~~~l~~L~~L~L~~n~~~~~~p~~~~~--------l 276 (328)
T 4fcg_A 213 IRNSPLSAL------GPAIHHLPKLEELDLRGCTALRNYP--PIFGGRAPLKRLILKDCSNLLTLPLDIHR--------L 276 (328)
T ss_dssp EESSCCCCC------CGGGGGCTTCCEEECTTCTTCCBCC--CCTTCCCCCCEEECTTCTTCCBCCTTGGG--------C
T ss_pred ccCCCCCcC------chhhccCCCCCEEECcCCcchhhhH--HHhcCCCCCCEEECCCCCchhhcchhhhc--------C
Confidence 999988754 4568899999999999998777764 35789999999999999888777765444 9
Q ss_pred CccceeeccccccccccC
Q 039180 763 PQMTTLRLEILPELKCYT 780 (790)
Q Consensus 763 p~L~~L~l~~c~~L~~l~ 780 (790)
++|++|+|++|+.+..+|
T Consensus 277 ~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 277 TQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp TTCCEEECTTCTTCCCCC
T ss_pred CCCCEEeCCCCCchhhcc
Confidence 999999999999999887
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.85 E-value=2.6e-22 Score=210.96 Aligned_cols=251 Identities=12% Similarity=0.109 Sum_probs=203.2
Q ss_pred CCChhhhccCCceEEEEecCccccCCC-hhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhhhc
Q 039180 491 NIPENFFKGVKKLRVVALVKMLLSSLP-SSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGE 569 (790)
Q Consensus 491 ~lp~~~~~~l~~L~~L~L~~~~~~~lp-~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~ 569 (790)
..+..++..+++|++|++++|.++.++ ..+..+++|++|+|++|.+++. ++ +..+++|++|++++|.++.+|.
T Consensus 24 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~Ls~n~l~~l~~---- 97 (317)
T 3o53_A 24 QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-LD-LESLSTLRTLDLNNNYVQELLV---- 97 (317)
T ss_dssp HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEE-EE-ETTCTTCCEEECCSSEEEEEEE----
T ss_pred hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcc-hh-hhhcCCCCEEECcCCccccccC----
Confidence 355567778899999999999999774 7899999999999999999886 33 8999999999999999987763
Q ss_pred ccccceecCCccccccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCcc
Q 039180 570 LTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPES 649 (790)
Q Consensus 570 l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 649 (790)
+++|++|++++| .+..+++. .+++|++|++++|.+.. ..+..++.+++|+.|++++|.+..++..
T Consensus 98 ~~~L~~L~l~~n-~l~~~~~~---~~~~L~~L~l~~N~l~~-----------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 98 GPSIETLHAANN-NISRVSCS---RGQGKKNIYLANNKITM-----------LRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp CTTCCEEECCSS-CCSEEEEC---CCSSCEEEECCSSCCCS-----------GGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred CCCcCEEECCCC-ccCCcCcc---ccCCCCEEECCCCCCCC-----------ccchhhhccCCCCEEECCCCCCCcccHH
Confidence 489999999998 67777653 47899999999998742 2244677889999999999998766433
Q ss_pred -c--cccccceeEEEecCCCCCCCccccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCCcccccchhHH
Q 039180 650 -F--LTQKLERFKISIGNESFMPSQSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASM 726 (790)
Q Consensus 650 -~--~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~ 726 (790)
+ .+++|+.|++++|.+...+.. ..+++|+.|++++|.++.+ |..+..+++|+.|++++| .++.++. .
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l------~~~~~~l~~L~~L~L~~N-~l~~l~~--~ 232 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFM------GPEFQSAAGVTWISLRNN-KLVLIEK--A 232 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEE------CGGGGGGTTCSEEECTTS-CCCEECT--T
T ss_pred HHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcc------hhhhcccCcccEEECcCC-cccchhh--H
Confidence 2 268999999999998776543 3589999999999999876 444888999999999999 6777743 4
Q ss_pred HhccccccEEeeccCchh-hhHhhcCCCCCCCCcccCCccceeeccccccccccC
Q 039180 727 IQNFELLRELSIADCRGL-REIISKDRADHVTPCFVFPQMTTLRLEILPELKCYT 780 (790)
Q Consensus 727 ~~~l~~L~~L~l~~c~~l-~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~l~ 780 (790)
+..+++|+.|++++++-. ..++.... .+|+|+.|++.+++.++..+
T Consensus 233 ~~~l~~L~~L~l~~N~~~~~~~~~~~~--------~~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 233 LRFSQNLEHFDLRGNGFHCGTLRDFFS--------KNQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp CCCCTTCCEEECTTCCCBHHHHHHHHH--------TCHHHHHHHHHHHHHHHSSS
T ss_pred hhcCCCCCEEEccCCCccCcCHHHHHh--------ccccceEEECCCchhccCCc
Confidence 678999999999998754 23333222 48999999999887777653
No 60
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=4.3e-20 Score=214.19 Aligned_cols=155 Identities=21% Similarity=0.254 Sum_probs=123.9
Q ss_pred ecCCccccCCCcccccceeEEEeecccccCCCCc-c-CccccceeecccCCCCCCCCCChhhhccCCceEEEEecCcccc
Q 039180 437 VRNKNMWEWPNPDALKKYLAISLINSRINDIPEG-L-ESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLS 514 (790)
Q Consensus 437 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~ 514 (790)
+.+..+..+|. ..+..++++++++|.+..+|+. + .++++++|.+.++ .+. .+|++.|.++++|++|+|++|.++
T Consensus 38 c~~~~l~~vP~-~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~--~i~~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 38 CMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQ--TIEDGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp CTTSCCSSCCS-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCC--EECTTTTTTCTTCCEEECTTCCCC
T ss_pred CCCCCcCccCC-CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCC--CcChhHhcCCCCCCEEEccCCcCC
Confidence 33445555553 4577999999999999998753 3 6677777766554 455 588888899999999999999999
Q ss_pred CCC-hhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCc--ccchhhhcccccceecCCccccccccCchh
Q 039180 515 SLP-SSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIV--QLPKALGELTKLRLSDLTDCFHLKVIAPNV 591 (790)
Q Consensus 515 ~lp-~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~--~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~ 591 (790)
.+| ..|.++++|++|+|++|.++.+.+..|+++++|++|++++|.++ .+|..++.+++|++|++++| .++.+++..
T Consensus 114 ~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~ 192 (635)
T 4g8a_A 114 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTD 192 (635)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGG
T ss_pred CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc-ccccccccc
Confidence 886 46889999999999999999986667999999999999999887 46788899999999999998 566665554
Q ss_pred hcccc
Q 039180 592 ISSLT 596 (790)
Q Consensus 592 l~~l~ 596 (790)
+..+.
T Consensus 193 l~~L~ 197 (635)
T 4g8a_A 193 LRVLH 197 (635)
T ss_dssp GHHHH
T ss_pred ccchh
Confidence 54433
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.84 E-value=1.2e-20 Score=195.22 Aligned_cols=203 Identities=23% Similarity=0.287 Sum_probs=112.4
Q ss_pred CceEEEEecCccccCCC-hhhhhccccceeeccCccccccchhhhhccCcccEEeccCCC-Cccc-chhhhcccccceec
Q 039180 501 KKLRVVALVKMLLSSLP-SSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSD-IVQL-PKALGELTKLRLSD 577 (790)
Q Consensus 501 ~~L~~L~L~~~~~~~lp-~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~-l~~l-p~~l~~l~~L~~L~ 577 (790)
++|+.|++++|.++.+| ..+..+++|++|++++|.++.+.|..++.+++|++|++++|. ++.+ |..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 35555555555555443 345555555555555555555545555555555666655554 5544 34455555555555
Q ss_pred CCccccccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCccc--ccccc
Q 039180 578 LTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESF--LTQKL 655 (790)
Q Consensus 578 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L 655 (790)
+++| .+..+++..+.++++|++|++++|.+. ......++.+++|+.|++++|.+..++... .+++|
T Consensus 112 l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 179 (285)
T 1ozn_A 112 LDRC-GLQELGPGLFRGLAALQYLYLQDNALQ-----------ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179 (285)
T ss_dssp CTTS-CCCCCCTTTTTTCTTCCEEECCSSCCC-----------CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CCCC-cCCEECHhHhhCCcCCCEEECCCCccc-----------ccCHhHhccCCCccEEECCCCcccccCHHHhcCcccc
Confidence 5555 444444444555555666655555542 111223445555555555555544444321 24455
Q ss_pred ceeEEEecCCCCC-CCccccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCCcccc
Q 039180 656 ERFKISIGNESFM-PSQSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKY 720 (790)
Q Consensus 656 ~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~ 720 (790)
+.|++++|.+... +..+..+++|+.|++++|.++.+ ++..+..+++|+.|++++|+...+
T Consensus 180 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL-----PTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC-----CHHHHTTCTTCCEEECCSSCEECS
T ss_pred CEEECCCCcccccCHhHccCcccccEeeCCCCcCCcC-----CHHHcccCcccCEEeccCCCccCC
Confidence 5555555554443 22455677788888888877643 445567778888888888764443
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.84 E-value=3.7e-20 Score=191.51 Aligned_cols=221 Identities=19% Similarity=0.223 Sum_probs=189.5
Q ss_pred eEEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCccc-chhhhcccccceecCCcc
Q 039180 503 LRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQL-PKALGELTKLRLSDLTDC 581 (790)
Q Consensus 503 L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~l~~~ 581 (790)
-+.++++++.++.+|..+ .++|++|++++|.++.+.+..++.+++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp SCEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred CeEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 367899999999998755 57999999999999998677899999999999999999976 678999999999999998
Q ss_pred ccccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCccc--cccccceeE
Q 039180 582 FHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESF--LTQKLERFK 659 (790)
Q Consensus 582 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~ 659 (790)
..++.+++..+..+++|++|++++|.+. ...+..+..+++|+.|++++|.+..++... .+++|+.|+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQ-----------ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF 159 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCC-----------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCC-----------EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEE
Confidence 5588887777999999999999999874 223456888999999999999988877643 378999999
Q ss_pred EEecCCCCCCC-ccccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCCcccccchhHHHhccccccEEee
Q 039180 660 ISIGNESFMPS-QSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFELLRELSI 738 (790)
Q Consensus 660 l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l 738 (790)
+++|.+...+. .+..+++|+.|++++|.++.+ .|..+..+++|+.|++++| .++.++. ..+..+++|+.|++
T Consensus 160 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l 232 (285)
T 1ozn_A 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV-----HPHAFRDLGRLMTLYLFAN-NLSALPT-EALAPLRALQYLRL 232 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-----CTTTTTTCTTCCEEECCSS-CCSCCCH-HHHTTCTTCCEEEC
T ss_pred CCCCcccccCHHHhcCccccCEEECCCCccccc-----CHhHccCcccccEeeCCCC-cCCcCCH-HHcccCcccCEEec
Confidence 99999887776 577899999999999988865 4667889999999999999 5677643 56789999999999
Q ss_pred ccCch
Q 039180 739 ADCRG 743 (790)
Q Consensus 739 ~~c~~ 743 (790)
++++-
T Consensus 233 ~~N~~ 237 (285)
T 1ozn_A 233 NDNPW 237 (285)
T ss_dssp CSSCE
T ss_pred cCCCc
Confidence 98753
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=3.7e-21 Score=214.00 Aligned_cols=237 Identities=14% Similarity=0.096 Sum_probs=177.9
Q ss_pred ccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEe
Q 039180 475 QLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILS 554 (790)
Q Consensus 475 ~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~ 554 (790)
++++|.+.++ .+. .+++..|..+++|++|+|++|.++.+++ ++.+++|++|+|++|.++++ | ..++|++|+
T Consensus 35 ~L~~L~Ls~n-~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~ 105 (487)
T 3oja_A 35 NVKELDLSGN-PLS--QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL-L----VGPSIETLH 105 (487)
T ss_dssp GCCEEECCSS-CCC--CCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEE
T ss_pred CccEEEeeCC-cCC--CCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCC-C----CCCCcCEEE
Confidence 5555555443 444 4666667888899999999888876554 88888999999999988876 3 237889999
Q ss_pred ccCCCCcccchhhhcccccceecCCccccccccCchhhccccccceEecccCCccchhhccccccccccccccc-CCCCC
Q 039180 555 FVRSDIVQLPKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELM-NLPWL 633 (790)
Q Consensus 555 L~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~L 633 (790)
+++|.++.+|.. .+++|++|++++| .++.+++..++++++|++|++++|.+.. ..+..+. .+++|
T Consensus 106 L~~N~l~~~~~~--~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------~~~~~l~~~l~~L 171 (487)
T 3oja_A 106 AANNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDT-----------VNFAELAASSDTL 171 (487)
T ss_dssp CCSSCCCCEEEC--CCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCCE-----------EEGGGGGGGTTTC
T ss_pred CcCCcCCCCCcc--ccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCCC-----------cChHHHhhhCCcc
Confidence 999988877653 5788899999887 6666666667888999999998888742 2344454 67889
Q ss_pred cEEEEEecCCCCCCccccccccceeEEEecCCCCCCCccccCCccCeeeccceecceecccCCCccccccCCCccEEeec
Q 039180 634 TTLEIDVKNDSILPESFLTQKLERFKISIGNESFMPSQSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVR 713 (790)
Q Consensus 634 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~ 713 (790)
+.|++++|.+..++....+++|+.|++++|.+...+..+..+++|+.|++++|.++.+ |..+..+++|+.|+++
T Consensus 172 ~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~l------p~~l~~l~~L~~L~l~ 245 (487)
T 3oja_A 172 EHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI------EKALRFSQNLEHFDLR 245 (487)
T ss_dssp CEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEE------CTTCCCCTTCCEEECT
T ss_pred cEEecCCCccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCccc------chhhccCCCCCEEEcC
Confidence 9999988888777776678888888888888887777677788899999998888765 5557788888999998
Q ss_pred cCCcccccchhHHHhccccccEEeeccC
Q 039180 714 SCPKLKYIFSASMIQNFELLRELSIADC 741 (790)
Q Consensus 714 ~~~~l~~~~~~~~~~~l~~L~~L~l~~c 741 (790)
+|+..... .+..+..++.|+.|.+..+
T Consensus 246 ~N~l~c~~-~~~~~~~l~~L~~l~~~~~ 272 (487)
T 3oja_A 246 GNGFHCGT-LRDFFSKNQRVQTVAKQTV 272 (487)
T ss_dssp TCCBCHHH-HHHHHTTCHHHHHHHHHHH
T ss_pred CCCCcCcc-hHHHHHhCCCCcEEecccc
Confidence 88644222 2345667777777777643
No 64
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.82 E-value=2.8e-19 Score=196.81 Aligned_cols=181 Identities=19% Similarity=0.203 Sum_probs=96.4
Q ss_pred cceeEEEeecccccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCCChhhhhccccceeec
Q 039180 452 KKYLAISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLPSSIYLLVNLQTLCL 531 (790)
Q Consensus 452 ~~l~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L 531 (790)
..++.+++++|.+..+|... +++++|.+.+ |.+. .+|. +.++++|++|++++|.++.+|..+ .+|++|++
T Consensus 111 ~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~-n~l~--~lp~--~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L 180 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDLP--PLLEYLGVSN-NQLE--KLPE--LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAA 180 (454)
T ss_dssp TTCCEEECCSSCCSCCCSCC--TTCCEEECCS-SCCS--SCCC--CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEEC
T ss_pred CCCcEEECCCCccCcccCCC--CCCCEEECcC-CCCC--CCcc--cCCCCCCCEEECCCCcCcccCCCc---ccccEEEC
Confidence 45555555555554444321 3344433332 2333 3552 455666666666666655555432 35666666
Q ss_pred cCccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceecCCccccccccCchhhccccccceEecccCCccch
Q 039180 532 DQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWE 611 (790)
Q Consensus 532 ~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 611 (790)
++|.++++ | .++++++|++|++++|.++.+|... ++|++|++++| .+..+|. ++.+++|++|++++|.+..
T Consensus 181 ~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~~N~l~~- 251 (454)
T 1jl5_A 181 GNNQLEEL-P-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNLLKT- 251 (454)
T ss_dssp CSSCCSSC-C-CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSS-
T ss_pred cCCcCCcC-c-cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCC-cCCcccc--cCCCCCCCEEECCCCcCCc-
Confidence 66666554 4 4566666666666666665555422 35666666665 4455552 5666666666666665531
Q ss_pred hhcccccccccccccccCCCCCcEEEEEecCCCCCCccccccccceeEEEecCCCC
Q 039180 612 VERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFLTQKLERFKISIGNESF 667 (790)
Q Consensus 612 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 667 (790)
.+. .+++|+.|++++|.+..+|.. .++|+.|++++|.+..
T Consensus 252 -----------l~~---~~~~L~~L~l~~N~l~~l~~~--~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 252 -----------LPD---LPPSLEALNVRDNYLTDLPEL--PQSLTFLDVSENIFSG 291 (454)
T ss_dssp -----------CCS---CCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSE
T ss_pred -----------ccc---cccccCEEECCCCcccccCcc--cCcCCEEECcCCccCc
Confidence 011 124666666666665555543 3556666666665543
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=7.4e-19 Score=199.32 Aligned_cols=255 Identities=20% Similarity=0.185 Sum_probs=204.4
Q ss_pred ceeEEEeecccccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCCChhhhhccccceeecc
Q 039180 453 KYLAISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLPSSIYLLVNLQTLCLD 532 (790)
Q Consensus 453 ~l~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~ 532 (790)
.++.++++++.+..+|..+. ++++.|.+.++ .+. .+|. .+++|++|+|++|.++.+|. .+++|++|+|+
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N-~l~--~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDN-NLT--SLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSC-CCS--CCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCC-CCC--CCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECc
Confidence 57889999999999988665 67777766555 454 5776 57899999999999998887 67899999999
Q ss_pred CccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceecCCccccccccCchhhccccccceEecccCCccchh
Q 039180 533 QSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEV 612 (790)
Q Consensus 533 ~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 612 (790)
+|.++.+ |. .+++|++|++++|.++.+|.. +++|++|++++| .++.+|. .+++|+.|++++|.+..
T Consensus 110 ~N~l~~l-~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~----~~~~L~~L~L~~N~l~~-- 175 (622)
T 3g06_A 110 SNPLTHL-PA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA----LPSELCKLWAYNNQLTS-- 175 (622)
T ss_dssp SCCCCCC-CC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSC--
T ss_pred CCcCCCC-CC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC----ccCCCCEEECCCCCCCC--
Confidence 9999887 54 678899999999999988874 488999999998 6777764 35789999999988741
Q ss_pred hcccccccccccccccCCCCCcEEEEEecCCCCCCccccccccceeEEEecCCCCCCCccccCCccCeeeccceecceec
Q 039180 613 ERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFLTQKLERFKISIGNESFMPSQSVELPNLEALELCAINVDKIW 692 (790)
Q Consensus 613 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~ 692 (790)
.+ ..+++|+.|++++|.+..+|.. .++|+.|++++|.+...+. .+++|+.|++++|.++.+
T Consensus 176 ----------l~---~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~N~L~~l- 236 (622)
T 3g06_A 176 ----------LP---MLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPA---LPSGLKELIVSGNRLTSL- 236 (622)
T ss_dssp ----------CC---CCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCC---CCTTCCEEECCSSCCSCC-
T ss_pred ----------Cc---ccCCCCcEEECCCCCCCCCCCc--cchhhEEECcCCcccccCC---CCCCCCEEEccCCccCcC-
Confidence 12 3468899999999998888765 5889999999998877664 358899999999988764
Q ss_pred ccCCCccccccCCCccEEeeccCCcccccchhHHHhccccccEEeeccCchhhhHhhcCCCCCCCCcccCCccceeeccc
Q 039180 693 HYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFELLRELSIADCRGLREIISKDRADHVTPCFVFPQMTTLRLEI 772 (790)
Q Consensus 693 ~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~ 772 (790)
| ..+++|+.|+|++| .++.++. .+++|+.|++++| .++.++.... .+|+|+.|+|++
T Consensus 237 -----p---~~l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N-~L~~lp~~l~--------~l~~L~~L~L~~ 293 (622)
T 3g06_A 237 -----P---VLPSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRN-QLTRLPESLI--------HLSSETTVNLEG 293 (622)
T ss_dssp -----C---CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCCSCCGGGG--------GSCTTCEEECCS
T ss_pred -----C---CCCCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCC-CCCcCCHHHh--------hccccCEEEecC
Confidence 3 45689999999999 6777754 6789999999998 5666665433 489999999998
Q ss_pred cc
Q 039180 773 LP 774 (790)
Q Consensus 773 c~ 774 (790)
++
T Consensus 294 N~ 295 (622)
T 3g06_A 294 NP 295 (622)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=1.8e-20 Score=208.49 Aligned_cols=234 Identities=12% Similarity=0.101 Sum_probs=189.1
Q ss_pred cCCceEEEEecCccccCC-ChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceec
Q 039180 499 GVKKLRVVALVKMLLSSL-PSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSD 577 (790)
Q Consensus 499 ~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~ 577 (790)
.+++|++|+|++|.++.+ |..|+.+++|++|+|++|.+++..| ++.+++|++|+|++|.++.+|. .++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEE
Confidence 345899999999999977 5789999999999999999988734 9999999999999999988774 38999999
Q ss_pred CCccccccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCC-ccc--cccc
Q 039180 578 LTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILP-ESF--LTQK 654 (790)
Q Consensus 578 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~--~~~~ 654 (790)
+++| .+..+++. .+++|+.|++++|.+.. ..+..++.+++|+.|++++|.+...+ ..+ .+++
T Consensus 106 L~~N-~l~~~~~~---~l~~L~~L~L~~N~l~~-----------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 170 (487)
T 3oja_A 106 AANN-NISRVSCS---RGQGKKNIYLANNKITM-----------LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170 (487)
T ss_dssp CCSS-CCCCEEEC---CCSSCEEEECCSSCCCS-----------GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred CcCC-cCCCCCcc---ccCCCCEEECCCCCCCC-----------CCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCc
Confidence 9998 67777653 57899999999998842 23456778999999999999977643 333 3689
Q ss_pred cceeEEEecCCCCCCCccccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCCcccccchhHHHhcccccc
Q 039180 655 LERFKISIGNESFMPSQSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFELLR 734 (790)
Q Consensus 655 L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~ 734 (790)
|+.|++++|.+...+. ...+++|+.|+|++|.++.+ |..+..+++|+.|+|++| .+..+|. .+..+++|+
T Consensus 171 L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~------~~~~~~l~~L~~L~Ls~N-~l~~lp~--~l~~l~~L~ 240 (487)
T 3oja_A 171 LEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFM------GPEFQSAAGVTWISLRNN-KLVLIEK--ALRFSQNLE 240 (487)
T ss_dssp CCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEE------CGGGGGGTTCSEEECTTS-CCCEECT--TCCCCTTCC
T ss_pred ccEEecCCCccccccc-cccCCCCCEEECCCCCCCCC------CHhHcCCCCccEEEecCC-cCcccch--hhccCCCCC
Confidence 9999999999877654 33589999999999999875 444889999999999999 5667643 477889999
Q ss_pred EEeeccCchh-hhHhhcCCCCCCCCcccCCccceeecc
Q 039180 735 ELSIADCRGL-REIISKDRADHVTPCFVFPQMTTLRLE 771 (790)
Q Consensus 735 ~L~l~~c~~l-~~~~~~~~~~~~~~~~~~p~L~~L~l~ 771 (790)
.|++++|+.. ..++.... .+|+|+.+.+.
T Consensus 241 ~L~l~~N~l~c~~~~~~~~--------~l~~L~~l~~~ 270 (487)
T 3oja_A 241 HFDLRGNGFHCGTLRDFFS--------KNQRVQTVAKQ 270 (487)
T ss_dssp EEECTTCCBCHHHHHHHHT--------TCHHHHHHHHH
T ss_pred EEEcCCCCCcCcchHHHHH--------hCCCCcEEecc
Confidence 9999998755 23333222 37777777775
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.80 E-value=1.1e-20 Score=198.05 Aligned_cols=225 Identities=17% Similarity=0.176 Sum_probs=143.5
Q ss_pred CChhhhccCCceEEEEecCcccc--CCChhhh-------hccccceeeccCccccccchhhh--hccCcccEEeccCCCC
Q 039180 492 IPENFFKGVKKLRVVALVKMLLS--SLPSSIY-------LLVNLQTLCLDQSILRDIDIAII--GKLKNLKILSFVRSDI 560 (790)
Q Consensus 492 lp~~~~~~l~~L~~L~L~~~~~~--~lp~~~~-------~l~~L~~L~L~~~~l~~l~p~~i--~~l~~L~~L~L~~~~l 560 (790)
+|..+... |+.|++++|.+. .+|..+. ++++|++|+|++|.+++..|..+ +.+++|++|++++|.+
T Consensus 57 ~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 133 (312)
T 1wwl_A 57 DLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW 133 (312)
T ss_dssp CCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC
T ss_pred cHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC
Confidence 66655433 777777777774 3566555 67788888888888776556665 7778888888888877
Q ss_pred cccchhhhcc-----cccceecCCccccccccCchhhccccccceEecccCCccchhhcccccccccccccc--cCCCCC
Q 039180 561 VQLPKALGEL-----TKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDEL--MNLPWL 633 (790)
Q Consensus 561 ~~lp~~l~~l-----~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l--~~l~~L 633 (790)
+.+|..++.+ ++|++|++++| .+..+++..++++++|++|++++|.+..... .+..+ ..+++|
T Consensus 134 ~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---------~~~~~~~~~l~~L 203 (312)
T 1wwl_A 134 ATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPELGERG---------LISALCPLKFPTL 203 (312)
T ss_dssp SSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTCHHHH---------HHHHSCTTSCTTC
T ss_pred cchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcCcchH---------HHHHHHhccCCCC
Confidence 7667767666 77888888877 5666666667778888888888777542211 12223 667778
Q ss_pred cEEEEEecCCCCCCcc---c--cccccceeEEEecCCCCCC--CccccCCccCeeeccceecceecccCCCccccccCCC
Q 039180 634 TTLEIDVKNDSILPES---F--LTQKLERFKISIGNESFMP--SQSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQS 706 (790)
Q Consensus 634 ~~L~l~~~~~~~~~~~---~--~~~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~ 706 (790)
+.|++++|.+..++.. . .+++|+.|++++|.+...+ .....+++|+.|++++|.++.+ |..+. ++
T Consensus 204 ~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i------p~~~~--~~ 275 (312)
T 1wwl_A 204 QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV------PKGLP--AK 275 (312)
T ss_dssp CEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSC------CSSCC--SE
T ss_pred CEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChh------hhhcc--CC
Confidence 8888877776643321 1 1356666666666655433 1333456677777777766543 33232 66
Q ss_pred ccEEeeccCCcccccchhHHHhccccccEEeeccC
Q 039180 707 LTRLIVRSCPKLKYIFSASMIQNFELLRELSIADC 741 (790)
Q Consensus 707 L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l~~c 741 (790)
|+.|++++| .++.+|. +..+++|+.|+++++
T Consensus 276 L~~L~Ls~N-~l~~~p~---~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 276 LSVLDLSYN-RLDRNPS---PDELPQVGNLSLKGN 306 (312)
T ss_dssp EEEEECCSS-CCCSCCC---TTTSCEEEEEECTTC
T ss_pred ceEEECCCC-CCCCChh---HhhCCCCCEEeccCC
Confidence 777777766 4555532 456666666666665
No 68
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.80 E-value=4.3e-19 Score=195.33 Aligned_cols=202 Identities=21% Similarity=0.236 Sum_probs=122.6
Q ss_pred ccceeEEEeecccccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCCChhhhhccccceee
Q 039180 451 LKKYLAISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLPSSIYLLVNLQTLC 530 (790)
Q Consensus 451 ~~~l~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~ 530 (790)
+.+++.+++++|.+..+|... .+++.|.+.+ |.+. .+|. ..++|++|++++|.++.+| .++++++|++|+
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~~--~~L~~L~l~~-n~l~--~l~~----~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~ 159 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPELP--QSLKSLLVDN-NNLK--ALSD----LPPLLEYLGVSNNQLEKLP-ELQNSSFLKIID 159 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCCC--TTCCEEECCS-SCCS--CCCS----CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEE
T ss_pred cCCCCEEEccCCcCCcccccc--CCCcEEECCC-CccC--cccC----CCCCCCEEECcCCCCCCCc-ccCCCCCCCEEE
Confidence 456777777777776666532 4555554433 3333 2332 1156777777777777766 477777777777
Q ss_pred ccCccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceecCCccccccccCchhhccccccceEecccCCccc
Q 039180 531 LDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEW 610 (790)
Q Consensus 531 L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 610 (790)
+++|.++++ |.. ..+|++|++++|.++.+| .++.+++|++|++++| .++.+|.. .++|++|++++|.+.
T Consensus 160 l~~N~l~~l-p~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~~----~~~L~~L~l~~n~l~- 228 (454)
T 1jl5_A 160 VDNNSLKKL-PDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN-SLKKLPDL----PLSLESIVAGNNILE- 228 (454)
T ss_dssp CCSSCCSCC-CCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS-CCSSCCCC----CTTCCEEECCSSCCS-
T ss_pred CCCCcCccc-CCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCC-cCCcCCCC----cCcccEEECcCCcCC-
Confidence 777776664 433 246777777777777666 4677777777777776 45555432 246777777777652
Q ss_pred hhhcccccccccccccccCCCCCcEEEEEecCCCCCCccccccccceeEEEecCCCCCCCccccCCccCeeeccceecce
Q 039180 611 EVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFLTQKLERFKISIGNESFMPSQSVELPNLEALELCAINVDK 690 (790)
Q Consensus 611 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~ 690 (790)
..+ .++.+++|+.|++++|.+..+|.. .++|+.|++++|.+...+.. +++|+.|++++|.++.
T Consensus 229 -----------~lp-~~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 229 -----------ELP-ELQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSG 291 (454)
T ss_dssp -----------SCC-CCTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSE
T ss_pred -----------ccc-ccCCCCCCCEEECCCCcCCccccc--ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCc
Confidence 112 356677777777777776666543 46777777777766554432 2455555555554443
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.79 E-value=5.8e-19 Score=181.56 Aligned_cols=201 Identities=20% Similarity=0.225 Sum_probs=137.7
Q ss_pred CceEEEEecCccccCCCh-hhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccc-hhhhcccccceecC
Q 039180 501 KKLRVVALVKMLLSSLPS-SIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLP-KALGELTKLRLSDL 578 (790)
Q Consensus 501 ~~L~~L~L~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~l 578 (790)
+.|++|++++|.++.++. .+.++++|++|++++|.++.+.+..++++++|++|++++|.++.++ ..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 457777777777776643 6777777777777777777765556777777777777777777555 45677777777777
Q ss_pred CccccccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCcccc--ccccc
Q 039180 579 TDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFL--TQKLE 656 (790)
Q Consensus 579 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~L~ 656 (790)
++| .+..+++..++++++|++|++++|.+. ....+..++.+++|+.|++++|.+..++.... +++|+
T Consensus 108 ~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~----------~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 176 (276)
T 2z62_A 108 VET-NLASLENFPIGHLKTLKELNVAHNLIQ----------SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176 (276)
T ss_dssp TTS-CCCCSTTCCCTTCTTCCEEECCSSCCC----------CCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred CCC-CccccCchhcccCCCCCEEECcCCccc----------eecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc
Confidence 776 556565545677777777777777663 11234566777777777777777665543321 34444
Q ss_pred ----eeEEEecCCCCCCCccccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCCc
Q 039180 657 ----RFKISIGNESFMPSQSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPK 717 (790)
Q Consensus 657 ----~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~ 717 (790)
.|++++|.+...+.......+|+.|++++|.++.+ ++..+..+++|+.|+|++|+.
T Consensus 177 ~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 177 LLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSV-----PDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp TCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCC-----CTTTTTTCCSCCEEECCSSCB
T ss_pred ccceeeecCCCcccccCccccCCCcccEEECCCCceeec-----CHhHhcccccccEEEccCCcc
Confidence 56667776665555444455788888888887754 444567788888888888753
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.78 E-value=9.2e-19 Score=179.28 Aligned_cols=196 Identities=20% Similarity=0.256 Sum_probs=107.0
Q ss_pred eEEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhh-hcccccceecCCcc
Q 039180 503 LRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKAL-GELTKLRLSDLTDC 581 (790)
Q Consensus 503 L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l-~~l~~L~~L~l~~~ 581 (790)
++.++++++.++.+|..+. .+|++|+|++|.++.+.+..++++++|++|++++|.++.+|..+ ..+++|++|++++|
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 4445555555555554332 34555555555555543344555555555555555555544432 44555555555554
Q ss_pred ccccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCccc--cccccceeE
Q 039180 582 FHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESF--LTQKLERFK 659 (790)
Q Consensus 582 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~ 659 (790)
.++.+++..+.++++|++|++++|.+.. ..+..+..+++|+.|++++|.+..++... .+++|+.|+
T Consensus 96 -~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 163 (270)
T 2o6q_A 96 -KLQALPIGVFDQLVNLAELRLDRNQLKS-----------LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELR 163 (270)
T ss_dssp -CCCCCCTTTTTTCSSCCEEECCSSCCCC-----------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred -cCCcCCHhHcccccCCCEEECCCCccCe-----------eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeE
Confidence 4444544444555555555555554421 11223445555555555555554444432 245555555
Q ss_pred EEecCCCCCCC-ccccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCCc
Q 039180 660 ISIGNESFMPS-QSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPK 717 (790)
Q Consensus 660 l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~ 717 (790)
+++|.+...+. .+..+++|+.|++++|.++.+ ++..+..+++|+.|+|++|+.
T Consensus 164 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-----~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 164 LYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV-----PEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC-----CTTTTTTCTTCCEEECCSSCB
T ss_pred ecCCcCcEeChhHhccCCCcCEEECCCCcCCcC-----CHHHhccccCCCEEEecCCCe
Confidence 55555544443 355678888888888877654 444567788888888888763
No 71
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.78 E-value=1.8e-18 Score=200.60 Aligned_cols=151 Identities=20% Similarity=0.298 Sum_probs=125.2
Q ss_pred eEEEeecccccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCCC-hhhhhccccceeeccC
Q 039180 455 LAISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLP-SSIYLLVNLQTLCLDQ 533 (790)
Q Consensus 455 ~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp-~~~~~l~~L~~L~L~~ 533 (790)
..++.++..+..||..+ |.-.+-+.+++|.+. .+|+..|.++++|++|+|++|.++.+| ..|.++++|++|+|++
T Consensus 34 ~~~~c~~~~l~~vP~~l--p~~~~~LdLs~N~i~--~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~ 109 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLR--HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 109 (635)
T ss_dssp TEEECTTSCCSSCCSSS--CTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCCcCccCCCC--CcCCCEEEeeCCCCC--CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccC
Confidence 34555566778888754 444445556667777 788888899999999999999999885 5789999999999999
Q ss_pred ccccccchhhhhccCcccEEeccCCCCcccchh-hhcccccceecCCcccccccc-CchhhccccccceEecccCCccc
Q 039180 534 SILRDIDIAIIGKLKNLKILSFVRSDIVQLPKA-LGELTKLRLSDLTDCFHLKVI-APNVISSLTRLEELYMGNCPIEW 610 (790)
Q Consensus 534 ~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l~~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~~~ 610 (790)
|+++.+.+..|+++++|++|+|++|.++.+|.. ++++++|++|++++| .+..+ .+..++.+++|++|++++|.+..
T Consensus 110 N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 110 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp CCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCccccc
Confidence 999999677899999999999999999988764 899999999999998 55543 24558899999999999998754
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.78 E-value=9.6e-19 Score=180.69 Aligned_cols=199 Identities=23% Similarity=0.228 Sum_probs=116.0
Q ss_pred ccCCceEEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceec
Q 039180 498 KGVKKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSD 577 (790)
Q Consensus 498 ~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~ 577 (790)
.++++++.++++++.++.+|..+. .+|++|+|++|.++.+.|..+..+++|++|+|++|.++.+|.. +.+++|++|+
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEE
T ss_pred cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEE
Confidence 455556666666666555554443 4556666666665555455555666666666666655555443 5555666666
Q ss_pred CCccccccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCccc--ccccc
Q 039180 578 LTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESF--LTQKL 655 (790)
Q Consensus 578 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L 655 (790)
+++| .++.+|.. +..+++|++|++++|.+.. ..+..+..+++|+.|++++|.+..++... .+++|
T Consensus 84 Ls~N-~l~~l~~~-~~~l~~L~~L~l~~N~l~~-----------l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 150 (290)
T 1p9a_G 84 LSHN-QLQSLPLL-GQTLPALTVLDVSFNRLTS-----------LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150 (290)
T ss_dssp CCSS-CCSSCCCC-TTTCTTCCEEECCSSCCCC-----------CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CCCC-cCCcCchh-hccCCCCCEEECCCCcCcc-----------cCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC
Confidence 6655 44555443 4555666666666655421 11234555556666666666555555433 24556
Q ss_pred ceeEEEecCCCCCCC-ccccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCCcc
Q 039180 656 ERFKISIGNESFMPS-QSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKL 718 (790)
Q Consensus 656 ~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l 718 (790)
+.|++++|.+...+. .+..+++|+.|++++|.++.+ |..+..+++|+.|+|++|+..
T Consensus 151 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i------p~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI------PKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC------CTTTTTTCCCSEEECCSCCBC
T ss_pred CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc------ChhhcccccCCeEEeCCCCcc
Confidence 666666666555554 345677888888888877754 455666678888888877643
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.77 E-value=1.9e-19 Score=188.58 Aligned_cols=244 Identities=15% Similarity=0.159 Sum_probs=182.5
Q ss_pred cceeEEEeecccccCCCCccCccccceeecccCCCCCCCCCChhhh------ccCCceEEEEecCcccc-CCChhh--hh
Q 039180 452 KKYLAISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFF------KGVKKLRVVALVKMLLS-SLPSSI--YL 522 (790)
Q Consensus 452 ~~l~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~------~~l~~L~~L~L~~~~~~-~lp~~~--~~ 522 (790)
.+++.+.+.+|.+ .+|..+... ++.|. ++++.+....+|..+. .++++|++|++++|.++ .+|..+ ..
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~~~-L~~L~-L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFTDI-IKSLS-LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHHHH-HHHCC-CCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CCceeEeeccccc-ccHHHHHHH-Hhhcc-cccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 4566666777777 667644222 44443 3334332113565442 26899999999999998 578776 89
Q ss_pred ccccceeeccCccccccchhhhhcc-----CcccEEeccCCCCcccc-hhhhcccccceecCCccccccc--cCch-hhc
Q 039180 523 LVNLQTLCLDQSILRDIDIAIIGKL-----KNLKILSFVRSDIVQLP-KALGELTKLRLSDLTDCFHLKV--IAPN-VIS 593 (790)
Q Consensus 523 l~~L~~L~L~~~~l~~l~p~~i~~l-----~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~l~~~~~l~~--~~~~-~l~ 593 (790)
+++|++|+|++|.+++. |..++.+ ++|++|++++|.++.+| ..++.+++|++|++++|...+. ++.. .++
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 99999999999999998 8888887 89999999999999776 6789999999999999853332 2222 127
Q ss_pred cccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCC---ccccccccceeEEEecCCCCCCC
Q 039180 594 SLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILP---ESFLTQKLERFKISIGNESFMPS 670 (790)
Q Consensus 594 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~ 670 (790)
++++|++|++++|.+.... ......+..+++|+.|++++|.+...+ ....+++|+.|++++|.+...+.
T Consensus 199 ~l~~L~~L~L~~N~l~~~~--------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~ 270 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPS--------GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK 270 (312)
T ss_dssp SCTTCCEEECTTSCCCCHH--------HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCS
T ss_pred cCCCCCEEECCCCcCcchH--------HHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhh
Confidence 8999999999999874211 011123457889999999999877644 22236899999999999987776
Q ss_pred ccccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCC
Q 039180 671 QSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCP 716 (790)
Q Consensus 671 ~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~ 716 (790)
... ++|+.|++++|.++.+ |. +..+++|+.|++++|+
T Consensus 271 ~~~--~~L~~L~Ls~N~l~~~------p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 271 GLP--AKLSVLDLSYNRLDRN------PS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp SCC--SEEEEEECCSSCCCSC------CC-TTTSCEEEEEECTTCT
T ss_pred hcc--CCceEEECCCCCCCCC------hh-HhhCCCCCEEeccCCC
Confidence 443 8999999999998864 44 7889999999999995
No 74
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.77 E-value=1.5e-18 Score=181.03 Aligned_cols=190 Identities=20% Similarity=0.268 Sum_probs=109.0
Q ss_pred ccCCceEEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceec
Q 039180 498 KGVKKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSD 577 (790)
Q Consensus 498 ~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~ 577 (790)
..+++|+.|++++|.+..+| .+..+++|++|++++|.++.+ +. +..+++|++|++++|.++.+| .+..+++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred HHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence 34556666666666666655 456666666666666666665 33 666666666666666666554 356666666666
Q ss_pred CCccccccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCccccccccce
Q 039180 578 LTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFLTQKLER 657 (790)
Q Consensus 578 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~ 657 (790)
+++| .++.+++ +..+++|++|++++|.+.. ...+..+++|+.|++++|.+..++....+++|+.
T Consensus 114 l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~-------------~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~ 177 (308)
T 1h6u_A 114 LTST-QITDVTP--LAGLSNLQVLYLDLNQITN-------------ISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTT 177 (308)
T ss_dssp CTTS-CCCCCGG--GTTCTTCCEEECCSSCCCC-------------CGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCE
T ss_pred CCCC-CCCCchh--hcCCCCCCEEECCCCccCc-------------CccccCCCCccEEEccCCcCCCChhhcCCCCCCE
Confidence 6665 4555543 5666666666666665531 1115556666666666666555544333455555
Q ss_pred eEEEecCCCCCCCccccCCccCeeeccceecceecccCCCccccccCCCccEEeeccC
Q 039180 658 FKISIGNESFMPSQSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSC 715 (790)
Q Consensus 658 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~ 715 (790)
|++++|.+...+. +..+++|+.|++++|.++++ ++ +..+++|+.|++++|
T Consensus 178 L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~-----~~--l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 178 LKADDNKISDISP-LASLPNLIEVHLKNNQISDV-----SP--LANTSNLFIVTLTNQ 227 (308)
T ss_dssp EECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBC-----GG--GTTCTTCCEEEEEEE
T ss_pred EECCCCccCcChh-hcCCCCCCEEEccCCccCcc-----cc--ccCCCCCCEEEccCC
Confidence 5555555444332 34556666666666655543 11 455666666666665
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.77 E-value=2.1e-18 Score=177.41 Aligned_cols=216 Identities=18% Similarity=0.182 Sum_probs=170.9
Q ss_pred EEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccch-hhhcccccceecCCcccc
Q 039180 505 VVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPK-ALGELTKLRLSDLTDCFH 583 (790)
Q Consensus 505 ~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~~~~ 583 (790)
..+..+..+..+|..+. ++|++|++++|.++.+.+..++++++|++|++++|.++.++. .+..+++|++|++++| .
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~ 87 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-P 87 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-C
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-c
Confidence 35566667778887664 589999999999999866689999999999999999997765 6899999999999998 6
Q ss_pred ccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCC--CCcccc-ccccceeEE
Q 039180 584 LKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSI--LPESFL-TQKLERFKI 660 (790)
Q Consensus 584 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~-~~~L~~L~l 660 (790)
++.+++..+.++++|++|++++|.+.. .....++.+++|+.|++++|.+.. +|..+. +++|+.|++
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~L 156 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLAS-----------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCC-----------STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred cCccChhhhcCCccccEEECCCCCccc-----------cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEEC
Confidence 788887779999999999999998742 122357889999999999999776 455543 789999999
Q ss_pred EecCCCCCCC-ccccCCccC----eeeccceecceecccCCCccccccCCCccEEeeccCCcccccchhHHHhccccccE
Q 039180 661 SIGNESFMPS-QSVELPNLE----ALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFELLRE 735 (790)
Q Consensus 661 ~~~~~~~~~~-~~~~l~~L~----~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~ 735 (790)
++|.+...+. .+..+++|+ .|++++|.++.+ +.......+|+.|++++| .++.++. ..+..+++|+.
T Consensus 157 s~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~------~~~~~~~~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~ 228 (276)
T 2z62_A 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI------QPGAFKEIRLKELALDTN-QLKSVPD-GIFDRLTSLQK 228 (276)
T ss_dssp CSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEE------CTTSSCSCCEEEEECCSS-CCSCCCT-TTTTTCCSCCE
T ss_pred CCCCCCcCCHHHhhhhhhccccceeeecCCCccccc------CccccCCCcccEEECCCC-ceeecCH-hHhcccccccE
Confidence 9998876654 445556666 788999988865 222334458999999999 4777653 45678999999
Q ss_pred EeeccCc
Q 039180 736 LSIADCR 742 (790)
Q Consensus 736 L~l~~c~ 742 (790)
|++++++
T Consensus 229 L~l~~N~ 235 (276)
T 2z62_A 229 IWLHTNP 235 (276)
T ss_dssp EECCSSC
T ss_pred EEccCCc
Confidence 9998643
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.75 E-value=9.8e-18 Score=174.93 Aligned_cols=208 Identities=19% Similarity=0.187 Sum_probs=173.8
Q ss_pred EecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceecCCccccccc
Q 039180 507 ALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSDLTDCFHLKV 586 (790)
Q Consensus 507 ~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~ 586 (790)
.+..+.+... ..+..+.+|++|++++|.++.+ | .+..+++|++|++++|.++.++. +..+++|++|++++| .++.
T Consensus 25 ~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~ 99 (308)
T 1h6u_A 25 AAGKSNVTDT-VTQADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKN 99 (308)
T ss_dssp HTTCSSTTSE-ECHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSC
T ss_pred HhCCCCcCce-ecHHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCC
Confidence 3444444443 2456899999999999999886 5 68999999999999999999888 999999999999998 6777
Q ss_pred cCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCccccccccceeEEEecCCC
Q 039180 587 IAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFLTQKLERFKISIGNES 666 (790)
Q Consensus 587 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 666 (790)
++ .+.++++|++|++++|.+.. ...+..+++|+.|++++|.+..++....+++|+.|++++|.+.
T Consensus 100 ~~--~~~~l~~L~~L~l~~n~l~~-------------~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 100 VS--AIAGLQSIKTLDLTSTQITD-------------VTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp CG--GGTTCTTCCEEECTTSCCCC-------------CGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ch--hhcCCCCCCEEECCCCCCCC-------------chhhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCC
Confidence 75 38999999999999998741 2248889999999999999888887666899999999999887
Q ss_pred CCCCccccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCCcccccchhHHHhccccccEEeeccCchhhh
Q 039180 667 FMPSQSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFELLRELSIADCRGLRE 746 (790)
Q Consensus 667 ~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 746 (790)
..+. +..+++|+.|++++|.++++ ++ +..+++|+.|++++| .+..+++ +..+++|+.|++++++ +..
T Consensus 165 ~~~~-l~~l~~L~~L~l~~n~l~~~-----~~--l~~l~~L~~L~L~~N-~l~~~~~---l~~l~~L~~L~l~~N~-i~~ 231 (308)
T 1h6u_A 165 DLTP-LANLSKLTTLKADDNKISDI-----SP--LASLPNLIEVHLKNN-QISDVSP---LANTSNLFIVTLTNQT-ITN 231 (308)
T ss_dssp CCGG-GTTCTTCCEEECCSSCCCCC-----GG--GGGCTTCCEEECTTS-CCCBCGG---GTTCTTCCEEEEEEEE-EEC
T ss_pred CChh-hcCCCCCCEEECCCCccCcC-----hh--hcCCCCCCEEEccCC-ccCcccc---ccCCCCCCEEEccCCe-eec
Confidence 7665 77899999999999988865 22 788999999999999 5777643 6889999999999985 444
Q ss_pred H
Q 039180 747 I 747 (790)
Q Consensus 747 ~ 747 (790)
.
T Consensus 232 ~ 232 (308)
T 1h6u_A 232 Q 232 (308)
T ss_dssp C
T ss_pred C
Confidence 3
No 77
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.74 E-value=1.1e-19 Score=201.97 Aligned_cols=139 Identities=17% Similarity=0.042 Sum_probs=78.5
Q ss_pred CCCCCcEEEEEecCCCC-----CCcccc-ccccceeEEEecCCCCCCC------ccccCCccCeeeccceecceecccCC
Q 039180 629 NLPWLTTLEIDVKNDSI-----LPESFL-TQKLERFKISIGNESFMPS------QSVELPNLEALELCAINVDKIWHYNL 696 (790)
Q Consensus 629 ~l~~L~~L~l~~~~~~~-----~~~~~~-~~~L~~L~l~~~~~~~~~~------~~~~l~~L~~L~l~~~~l~~l~~~~~ 696 (790)
.+++|+.|++++|.++. ++..+. +++|+.|++++|.+..... .....++|+.|++++|.++.... ..
T Consensus 254 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~-~~ 332 (461)
T 1z7x_W 254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACC-SH 332 (461)
T ss_dssp TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH-HH
T ss_pred CCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHH-HH
Confidence 45667777777666544 232222 5667777777766542211 11123577777777776653210 01
Q ss_pred CccccccCCCccEEeeccCCcccccchhHHHh----ccccccEEeeccCchhh-----hHhhcCCCCCCCCcccCCccce
Q 039180 697 LPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQ----NFELLRELSIADCRGLR-----EIISKDRADHVTPCFVFPQMTT 767 (790)
Q Consensus 697 ~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~----~l~~L~~L~l~~c~~l~-----~~~~~~~~~~~~~~~~~p~L~~ 767 (790)
.+..+..+++|+.|+|++| .+++........ ..++|+.|++++|. ++ .++.... .+|+|++
T Consensus 333 l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~--------~~~~L~~ 402 (461)
T 1z7x_W 333 FSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLL--------ANHSLRE 402 (461)
T ss_dssp HHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHH--------HCCCCCE
T ss_pred HHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHH--------hCCCccE
Confidence 2344566788888888888 455543222222 15688888888874 44 3333222 3788888
Q ss_pred eecccccccccc
Q 039180 768 LRLEILPELKCY 779 (790)
Q Consensus 768 L~l~~c~~L~~l 779 (790)
|++++|+ +...
T Consensus 403 L~l~~N~-i~~~ 413 (461)
T 1z7x_W 403 LDLSNNC-LGDA 413 (461)
T ss_dssp EECCSSS-CCHH
T ss_pred EECCCCC-CCHH
Confidence 8888874 5443
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=4.2e-18 Score=170.98 Aligned_cols=84 Identities=24% Similarity=0.259 Sum_probs=42.7
Q ss_pred ccceeeccCccccccchhhhhccCcccEEeccCCC-Ccccch-hhhcccccceecCCccccccccCchhhccccccceEe
Q 039180 525 NLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSD-IVQLPK-ALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELY 602 (790)
Q Consensus 525 ~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~-l~~lp~-~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~ 602 (790)
+|++|++++|.++.+.+..++.+++|++|++++|. ++.+|. .+..+++|++|++++|+.++.+++..+.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555555433345555555555555553 554443 3445555555555552244455444455555555555
Q ss_pred cccCCc
Q 039180 603 MGNCPI 608 (790)
Q Consensus 603 l~~~~~ 608 (790)
+++|.+
T Consensus 112 l~~n~l 117 (239)
T 2xwt_C 112 IFNTGL 117 (239)
T ss_dssp EEEECC
T ss_pred CCCCCC
Confidence 555544
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=5.9e-18 Score=169.90 Aligned_cols=208 Identities=14% Similarity=0.168 Sum_probs=166.7
Q ss_pred ccccchhhhhccCcccEEeccCCCCcccch-hhhcccccceecCCccccccccCchhhccccccceEeccc-CCccchhh
Q 039180 536 LRDIDIAIIGKLKNLKILSFVRSDIVQLPK-ALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGN-CPIEWEVE 613 (790)
Q Consensus 536 l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~ 613 (790)
++.+ |. +. .+|++|++++|.++.+|. .+..+++|++|++++|..++.+++..+.++++|++|++++ |.+.
T Consensus 23 l~~i-p~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~---- 94 (239)
T 2xwt_C 23 IQRI-PS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT---- 94 (239)
T ss_dssp CSSC-CC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC----
T ss_pred cccc-CC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee----
Confidence 5555 55 33 489999999999998887 6889999999999998548889887799999999999998 7763
Q ss_pred cccccccccccccccCCCCCcEEEEEecCCCCCCccccccccc---eeEEEec-CCCCCCC-ccccCCccC-eeecccee
Q 039180 614 RANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFLTQKLE---RFKISIG-NESFMPS-QSVELPNLE-ALELCAIN 687 (790)
Q Consensus 614 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~-~~~~l~~L~-~L~l~~~~ 687 (790)
......+..+++|+.|++++|.+..+|....+++|+ .|++++| .+...+. .+..+++|+ .|++++|.
T Consensus 95 -------~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 95 -------YIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167 (239)
T ss_dssp -------EECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC
T ss_pred -------EcCHHHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC
Confidence 122356788999999999999988888754577787 9999999 8777666 577899999 99999999
Q ss_pred cceecccCCCccccccCCCccEEeeccCCcccccchhHHHhcc-ccccEEeeccCchhhhHhhcCCCCCCCCcccCCccc
Q 039180 688 VDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNF-ELLRELSIADCRGLREIISKDRADHVTPCFVFPQMT 766 (790)
Q Consensus 688 l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l-~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~p~L~ 766 (790)
++.+ ++..+.. ++|+.|++++|+.++.++. ..+.++ ++|+.|+++++ .++.++.. .|++|+
T Consensus 168 l~~i-----~~~~~~~-~~L~~L~L~~n~~l~~i~~-~~~~~l~~~L~~L~l~~N-~l~~l~~~----------~~~~L~ 229 (239)
T 2xwt_C 168 FTSV-----QGYAFNG-TKLDAVYLNKNKYLTVIDK-DAFGGVYSGPSLLDVSQT-SVTALPSK----------GLEHLK 229 (239)
T ss_dssp CCEE-----CTTTTTT-CEEEEEECTTCTTCCEECT-TTTTTCSBCCSEEECTTC-CCCCCCCT----------TCTTCS
T ss_pred Cccc-----CHhhcCC-CCCCEEEcCCCCCcccCCH-HHhhccccCCcEEECCCC-ccccCChh----------HhccCc
Confidence 8876 2333344 8999999999976887754 457788 99999999996 46655442 399999
Q ss_pred eeeccccccc
Q 039180 767 TLRLEILPEL 776 (790)
Q Consensus 767 ~L~l~~c~~L 776 (790)
.|++.++++|
T Consensus 230 ~L~l~~~~~l 239 (239)
T 2xwt_C 230 ELIARNTWTL 239 (239)
T ss_dssp EEECTTC---
T ss_pred eeeccCccCC
Confidence 9999998765
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.74 E-value=8.1e-18 Score=172.34 Aligned_cols=195 Identities=22% Similarity=0.266 Sum_probs=125.2
Q ss_pred ccCCceEEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchh-hhccccccee
Q 039180 498 KGVKKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKA-LGELTKLRLS 576 (790)
Q Consensus 498 ~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L 576 (790)
..+++|+.|+++++.+..++ .+..+++|++|++++|.++++ ..++.+++|++|++++|.++.+|.. +..+++|++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 45677777777777776654 466777777777777777763 3677777777777777777766544 4677777777
Q ss_pred cCCccccccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCccccccccc
Q 039180 577 DLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFLTQKLE 656 (790)
Q Consensus 577 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~ 656 (790)
++++| .++.+++..++++++|++|++++|.+. ...+..++.+++|+.|++++|.+..++..
T Consensus 115 ~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~-----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------- 175 (272)
T 3rfs_A 115 VLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQLQ-----------SLPKGVFDKLTNLTELDLSYNQLQSLPEG------- 175 (272)
T ss_dssp ECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCC-----------CCCTTTTTTCTTCCEEECCSSCCCCCCTT-------
T ss_pred ECCCC-cCCccCHHHhccCCCCCEEECCCCccC-----------ccCHHHhccCccCCEEECCCCCcCccCHH-------
Confidence 77776 566666665677777777777777653 11123355666677777666665544432
Q ss_pred eeEEEecCCCCCCCccccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCCcccccchhHHHhccccccEE
Q 039180 657 RFKISIGNESFMPSQSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFELLREL 736 (790)
Q Consensus 657 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L 736 (790)
.+..+++|+.|++++|.++.+ ++..+..+++|+.|++++|+.. ..+|+|+.|
T Consensus 176 --------------~~~~l~~L~~L~L~~N~l~~~-----~~~~~~~l~~L~~L~l~~N~~~---------~~~~~l~~l 227 (272)
T 3rfs_A 176 --------------VFDKLTQLKDLRLYQNQLKSV-----PDGVFDRLTSLQYIWLHDNPWD---------CTCPGIRYL 227 (272)
T ss_dssp --------------TTTTCTTCCEEECCSSCCSCC-----CTTTTTTCTTCCEEECCSSCBC---------CCTTTTHHH
T ss_pred --------------HhcCCccCCEEECCCCcCCcc-----CHHHHhCCcCCCEEEccCCCcc---------ccCcHHHHH
Confidence 234566677777777766543 3444566777777777777422 234556666
Q ss_pred eeccCc
Q 039180 737 SIADCR 742 (790)
Q Consensus 737 ~l~~c~ 742 (790)
.+..+.
T Consensus 228 ~~~~n~ 233 (272)
T 3rfs_A 228 SEWINK 233 (272)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 655543
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.73 E-value=2.7e-18 Score=175.96 Aligned_cols=174 Identities=21% Similarity=0.261 Sum_probs=125.8
Q ss_pred hccCCceEEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchh-hhcccccce
Q 039180 497 FKGVKKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKA-LGELTKLRL 575 (790)
Q Consensus 497 ~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~ 575 (790)
+..+++|++|++++|.+..++ .+..+++|++|++++|.++++.+..++++++|++|++++|.++.+|.. +..+++|++
T Consensus 59 l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 137 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCE
Confidence 467888888888888887764 677888888888888888887666678888888888888888866654 678888888
Q ss_pred ecCCccccccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCccc--ccc
Q 039180 576 SDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESF--LTQ 653 (790)
Q Consensus 576 L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~ 653 (790)
|++++| .++.+++..++++++|++|++++|.+. ...+..++.+++|+.|++++|.+..++... .++
T Consensus 138 L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 205 (272)
T 3rfs_A 138 LNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQ-----------SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 205 (272)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-----------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred EECCCC-ccCccCHHHhccCccCCEEECCCCCcC-----------ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCc
Confidence 888887 677777776788888888888888763 122334677788888888888776666532 245
Q ss_pred ccceeEEEecCCCCCCCccccCCccCeeeccceecc
Q 039180 654 KLERFKISIGNESFMPSQSVELPNLEALELCAINVD 689 (790)
Q Consensus 654 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 689 (790)
+|+.|++++|.+. ..+++|+.|+++.|.++
T Consensus 206 ~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~ 235 (272)
T 3rfs_A 206 SLQYIWLHDNPWD------CTCPGIRYLSEWINKHS 235 (272)
T ss_dssp TCCEEECCSSCBC------CCTTTTHHHHHHHHHTG
T ss_pred CCCEEEccCCCcc------ccCcHHHHHHHHHHhCC
Confidence 5666665555432 23555666666666544
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.73 E-value=1.4e-17 Score=171.95 Aligned_cols=175 Identities=21% Similarity=0.220 Sum_probs=105.3
Q ss_pred CceEEEEecCccccCC-ChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceecCC
Q 039180 501 KKLRVVALVKMLLSSL-PSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSDLT 579 (790)
Q Consensus 501 ~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~ 579 (790)
+.+++|++++|.++.+ |..+..+++|++|+|++|.++.+ +.. +.+++|++|++++|.++.+|..+..+++|++|+++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECC
Confidence 3556666666666544 44566666666666666666654 222 55666666666666666666666666666666666
Q ss_pred ccccccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCcccc--ccccce
Q 039180 580 DCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFL--TQKLER 657 (790)
Q Consensus 580 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~L~~ 657 (790)
+| .++.+++..++++++|++|++++|.+.. ..+..+..+++|+.|++++|.+..+|...+ +++|+.
T Consensus 109 ~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 176 (290)
T 1p9a_G 109 FN-RLTSLPLGALRGLGELQELYLKGNELKT-----------LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176 (290)
T ss_dssp SS-CCCCCCSSTTTTCTTCCEEECTTSCCCC-----------CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCE
T ss_pred CC-cCcccCHHHHcCCCCCCEEECCCCCCCc-----------cChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCE
Confidence 65 5555555556666666666666665531 112234556666666666666665555432 566666
Q ss_pred eEEEecCCCCCCCccccCCccCeeeccceecc
Q 039180 658 FKISIGNESFMPSQSVELPNLEALELCAINVD 689 (790)
Q Consensus 658 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 689 (790)
|++++|.+...+......++|+.|++++|.+.
T Consensus 177 L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 177 LLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp EECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred EECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 66666666666655556667888888877554
No 83
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.73 E-value=2.4e-17 Score=168.65 Aligned_cols=200 Identities=27% Similarity=0.349 Sum_probs=115.0
Q ss_pred ceeEEEeecccccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCCChh-hhhccccceeec
Q 039180 453 KYLAISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLPSS-IYLLVNLQTLCL 531 (790)
Q Consensus 453 ~l~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp~~-~~~l~~L~~L~L 531 (790)
..+.++++++.+..+|..+. +.++.|.+.+ +.+. .++...|.++++|++|++++|.++.+|.. +..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~-n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQS-NKLS--SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC-TTCSEEECCS-SCCS--CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCccCCCCC-CCCCEEECcC-CCCC--eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 45677777777777775432 3344443333 3333 35554556666666666666666655443 355666666666
Q ss_pred cCccccccchhhhhccCcccEEeccCCCCcccchh-hhcccccceecCCccccccccCchhhccccccceEecccCCccc
Q 039180 532 DQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKA-LGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEW 610 (790)
Q Consensus 532 ~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 610 (790)
++|.++.+.+..+..+++|++|++++|.++.+|.. +..+++|++|++++| .++.+|+..++.+++|++|++++|.+..
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCcE
Confidence 66666665444556666666666666666654432 456666666666665 4555555555666666666666665421
Q ss_pred hhhcccccccccccccccCCCCCcEEEEEecCCCCCCccccccccceeEEEecCCCCCCCccccCCccCeeeccceecc
Q 039180 611 EVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFLTQKLERFKISIGNESFMPSQSVELPNLEALELCAINVD 689 (790)
Q Consensus 611 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 689 (790)
..+..+..+++|+.|++++|.+..++.. .+..+++|+.|++++|.+.
T Consensus 172 -----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~---------------------~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 172 -----------VPEGAFDKLTELKTLKLDNNQLKRVPEG---------------------AFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp -----------CCTTTTTTCTTCCEEECCSSCCSCCCTT---------------------TTTTCTTCCEEECCSSCBC
T ss_pred -----------eChhHhccCCCcCEEECCCCcCCcCCHH---------------------HhccccCCCEEEecCCCee
Confidence 1122344555555555555554444332 3455777888888887654
No 84
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.71 E-value=4.4e-19 Score=197.16 Aligned_cols=313 Identities=13% Similarity=0.034 Sum_probs=199.9
Q ss_pred ccceeEEEeecccccCCCC---ccCccccceeecccCCCCCC--CCCChhhhccCCceEEEEecCccccCC-Chhhh-hc
Q 039180 451 LKKYLAISLINSRINDIPE---GLESAQLEFLLMIPNNSFLG--PNIPENFFKGVKKLRVVALVKMLLSSL-PSSIY-LL 523 (790)
Q Consensus 451 ~~~l~~l~l~~~~~~~l~~---~~~~~~l~~l~~~~~~~~~~--~~lp~~~~~~l~~L~~L~L~~~~~~~l-p~~~~-~l 523 (790)
+.++++++++++.+...+. ...++++++|.+.++..... ..++ ..+..+++|++|++++|.+... +..+. .+
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHH-HHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHH-HHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 4678999999888755432 12566777777665542210 0122 3456789999999999988642 33333 35
Q ss_pred c----ccceeeccCccccc----cchhhhhccCcccEEeccCCCCcc-cchhhh-----cccccceecCCccccccccC-
Q 039180 524 V----NLQTLCLDQSILRD----IDIAIIGKLKNLKILSFVRSDIVQ-LPKALG-----ELTKLRLSDLTDCFHLKVIA- 588 (790)
Q Consensus 524 ~----~L~~L~L~~~~l~~----l~p~~i~~l~~L~~L~L~~~~l~~-lp~~l~-----~l~~L~~L~l~~~~~l~~~~- 588 (790)
. +|++|+|++|.++. ..|..+..+++|++|++++|.++. .+..+. ..++|++|++++| .++...
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~ 159 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASC 159 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHH
Confidence 5 69999999999874 237788889999999999998762 222222 2567999999998 455422
Q ss_pred ---chhhccccccceEecccCCccchhhccccccccccccccc-CCCCCcEEEEEecCCCCC-----Cccc-ccccccee
Q 039180 589 ---PNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELM-NLPWLTTLEIDVKNDSIL-----PESF-LTQKLERF 658 (790)
Q Consensus 589 ---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~-----~~~~-~~~~L~~L 658 (790)
+..+..+++|++|++++|.+..... ......+. ..++|+.|++++|.+... +..+ .+++|+.|
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~-------~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 232 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDINEAGV-------RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL 232 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHH-------HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHhhCCCCCEEECcCCCcchHHH-------HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEE
Confidence 2336678999999999988642110 01111221 366899999998886653 3322 26889999
Q ss_pred EEEecCCCCCC------CccccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCCcccccchhHHHh----
Q 039180 659 KISIGNESFMP------SQSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQ---- 728 (790)
Q Consensus 659 ~l~~~~~~~~~------~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~---- 728 (790)
++++|.+.... .....+++|++|++++|.++.... ...+..+..+++|+.|++++| .+++........
T Consensus 233 ~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~ 310 (461)
T 1z7x_W 233 ALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC-GDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLE 310 (461)
T ss_dssp ECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH-HHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTS
T ss_pred eccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHH-HHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhcc
Confidence 99988765432 122357899999999998775210 012444667899999999999 455432222122
Q ss_pred ccccccEEeeccCchhhhHhhcCCCCCCCCcccCCccceeecccccccccc
Q 039180 729 NFELLRELSIADCRGLREIISKDRADHVTPCFVFPQMTTLRLEILPELKCY 779 (790)
Q Consensus 729 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~l 779 (790)
..++|+.|++++|. ++........ .....+++|++|++++| .+...
T Consensus 311 ~~~~L~~L~L~~n~-l~~~~~~~l~---~~l~~~~~L~~L~Ls~n-~i~~~ 356 (461)
T 1z7x_W 311 PGCQLESLWVKSCS-FTAACCSHFS---SVLAQNRFLLELQISNN-RLEDA 356 (461)
T ss_dssp TTCCCCEEECTTSC-CBGGGHHHHH---HHHHHCSSCCEEECCSS-BCHHH
T ss_pred CCccceeeEcCCCC-CchHHHHHHH---HHHhhCCCccEEEccCC-ccccc
Confidence 23699999999985 3322110000 01123799999999998 46554
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.71 E-value=2.5e-18 Score=186.08 Aligned_cols=234 Identities=14% Similarity=0.069 Sum_probs=126.0
Q ss_pred ccCCceEEEEecCccccC-----CChhhhhccccceeeccCcc---ccccchhhh-------hccCcccEEeccCCCCcc
Q 039180 498 KGVKKLRVVALVKMLLSS-----LPSSIYLLVNLQTLCLDQSI---LRDIDIAII-------GKLKNLKILSFVRSDIVQ 562 (790)
Q Consensus 498 ~~l~~L~~L~L~~~~~~~-----lp~~~~~l~~L~~L~L~~~~---l~~l~p~~i-------~~l~~L~~L~L~~~~l~~ 562 (790)
..+++|++|+|++|.++. ++..+..+++|++|+|++|. +++..|..+ ..+++|++|+|++|.++.
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 566677777777776652 23345566777777777653 222224333 566777777777776654
Q ss_pred -----cchhhhcccccceecCCccccccccCchh----hccc---------cccceEecccCCccchhhccccccccccc
Q 039180 563 -----LPKALGELTKLRLSDLTDCFHLKVIAPNV----ISSL---------TRLEELYMGNCPIEWEVERANSERSNSSL 624 (790)
Q Consensus 563 -----lp~~l~~l~~L~~L~l~~~~~l~~~~~~~----l~~l---------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 624 (790)
+|..+..+++|++|++++| .++...+.. +..+ ++|++|++++|.+.... .....
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~-------~~~l~ 180 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS-------MKEWA 180 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG-------HHHHH
T ss_pred HHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH-------HHHHH
Confidence 5666667777777777776 333222211 2223 67777777777653100 00111
Q ss_pred ccccCCCCCcEEEEEecCCC------CCC-ccccccccceeEEEecCCC-----CCCCccccCCccCeeeccceecceec
Q 039180 625 DELMNLPWLTTLEIDVKNDS------ILP-ESFLTQKLERFKISIGNES-----FMPSQSVELPNLEALELCAINVDKIW 692 (790)
Q Consensus 625 ~~l~~l~~L~~L~l~~~~~~------~~~-~~~~~~~L~~L~l~~~~~~-----~~~~~~~~l~~L~~L~l~~~~l~~l~ 692 (790)
..+..+++|+.|++++|.+. ..+ ....+++|+.|++++|.+. ..+..+..+++|+.|+|++|.++...
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 260 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 260 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhh
Confidence 34556667777777766654 122 1222456666666666552 22234455666777777776655321
Q ss_pred ccCCCcccc--ccCCCccEEeeccCCcccc-----cchhHHHhccccccEEeeccCc
Q 039180 693 HYNLLPFML--SRFQSLTRLIVRSCPKLKY-----IFSASMIQNFELLRELSIADCR 742 (790)
Q Consensus 693 ~~~~~~~~~--~~l~~L~~L~L~~~~~l~~-----~~~~~~~~~l~~L~~L~l~~c~ 742 (790)
.. ..+..+ +.+++|+.|+|++|. ++. ++ .....++|+|+.|++++|+
T Consensus 261 ~~-~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~-~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 261 AA-AVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLK-TVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HH-HHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHH-HHHHHHCTTCCEEECTTSB
T ss_pred HH-HHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHH-HHHHhcCCCceEEEccCCc
Confidence 00 012223 236667777777763 443 32 1222456777777776664
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.70 E-value=4.3e-18 Score=178.12 Aligned_cols=200 Identities=15% Similarity=0.140 Sum_probs=143.7
Q ss_pred cCCceEEEEecCcccc-CCChhh--hhccccceeeccCccccccch----hhhhccCcccEEeccCCCCcccc-hhhhcc
Q 039180 499 GVKKLRVVALVKMLLS-SLPSSI--YLLVNLQTLCLDQSILRDIDI----AIIGKLKNLKILSFVRSDIVQLP-KALGEL 570 (790)
Q Consensus 499 ~l~~L~~L~L~~~~~~-~lp~~~--~~l~~L~~L~L~~~~l~~l~p----~~i~~l~~L~~L~L~~~~l~~lp-~~l~~l 570 (790)
.+++|++|++++|.+. ..|..+ ..+++|++|+|++|.+++..+ ..+..+++|++|++++|.+..+| ..+..+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 3466888888888877 446666 788888888888888776322 34557888888888888887555 567788
Q ss_pred cccceecCCccccccc--cCc-hhhccccccceEecccCCccchhhcccccccccccc-cccCCCCCcEEEEEecCCCCC
Q 039180 571 TKLRLSDLTDCFHLKV--IAP-NVISSLTRLEELYMGNCPIEWEVERANSERSNSSLD-ELMNLPWLTTLEIDVKNDSIL 646 (790)
Q Consensus 571 ~~L~~L~l~~~~~l~~--~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~ 646 (790)
++|++|++++|...+. ++. ..++++++|++|++++|.+.... ..+. .++.+++|+.|++++|.+...
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~---------~~~~~l~~~l~~L~~L~Ls~N~l~~~ 239 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPT---------GVCAALAAAGVQPHSLDLSHNSLRAT 239 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH---------HHHHHHHHHTCCCSSEECTTSCCCCC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchH---------HHHHHHHhcCCCCCEEECCCCCCCcc
Confidence 8888888888843221 222 22367888888888888774111 1111 246678888888888887665
Q ss_pred -Ccccc-c---cccceeEEEecCCCCCCCccccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCC
Q 039180 647 -PESFL-T---QKLERFKISIGNESFMPSQSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCP 716 (790)
Q Consensus 647 -~~~~~-~---~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~ 716 (790)
|..+. + ++|+.|++++|.+...|... +++|+.|++++|.++.+ |. +..+++|+.|+|++|+
T Consensus 240 ~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--~~~L~~L~Ls~N~l~~~------~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 240 VNPSAPRCMWSSALNSLNLSFAGLEQVPKGL--PAKLRVLDLSSNRLNRA------PQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCSCCSSCCCCTTCCCEECCSSCCCSCCSCC--CSCCSCEECCSCCCCSC------CC-TTSCCCCSCEECSSTT
T ss_pred chhhHHhccCcCcCCEEECCCCCCCchhhhh--cCCCCEEECCCCcCCCC------ch-hhhCCCccEEECcCCC
Confidence 44332 2 68899999888888766643 38999999999988854 22 5678999999999995
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.70 E-value=2e-17 Score=177.11 Aligned_cols=241 Identities=11% Similarity=0.060 Sum_probs=156.7
Q ss_pred CChhhhccCCceEEEEecCccccCCC-----hhhhhcc-ccceeeccCccccccchhhhhcc-----CcccEEeccCCCC
Q 039180 492 IPENFFKGVKKLRVVALVKMLLSSLP-----SSIYLLV-NLQTLCLDQSILRDIDIAIIGKL-----KNLKILSFVRSDI 560 (790)
Q Consensus 492 lp~~~~~~l~~L~~L~L~~~~~~~lp-----~~~~~l~-~L~~L~L~~~~l~~l~p~~i~~l-----~~L~~L~L~~~~l 560 (790)
..+.++...++|++|+|++|.++..+ ..+..++ +|++|+|++|.++...+..+..+ ++|++|+|++|.+
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 33445556666999999999988765 5677788 89999999999888777777775 8999999999988
Q ss_pred cccc-hh----hhcc-cccceecCCccccccccCchhhcc-----ccccceEecccCCccchhhcccccccccccccccC
Q 039180 561 VQLP-KA----LGEL-TKLRLSDLTDCFHLKVIAPNVISS-----LTRLEELYMGNCPIEWEVERANSERSNSSLDELMN 629 (790)
Q Consensus 561 ~~lp-~~----l~~l-~~L~~L~l~~~~~l~~~~~~~l~~-----l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 629 (790)
+..+ .. +..+ ++|++|++++| .++..+...+.. .++|++|++++|.+.... .......+..
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~-------~~~l~~~l~~ 164 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS-------SDELIQILAA 164 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC-------HHHHHHHHHT
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH-------HHHHHHHHhc
Confidence 8443 32 4444 78999999998 567666544433 368999999999874211 1122344555
Q ss_pred CC-CCcEEEEEecCCCCCCccc------cc-cccceeEEEecCCCCCC-----Ccccc-CCccCeeeccceecceecccC
Q 039180 630 LP-WLTTLEIDVKNDSILPESF------LT-QKLERFKISIGNESFMP-----SQSVE-LPNLEALELCAINVDKIWHYN 695 (790)
Q Consensus 630 l~-~L~~L~l~~~~~~~~~~~~------~~-~~L~~L~l~~~~~~~~~-----~~~~~-l~~L~~L~l~~~~l~~l~~~~ 695 (790)
++ +|+.|++++|.+....... .+ ++|+.|++++|.+.... ..+.. .++|+.|++++|.+++....
T Consensus 165 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~- 243 (362)
T 3goz_A 165 IPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE- 243 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHH-
T ss_pred CCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHH-
Confidence 55 8999999888865444321 12 47777777777765522 22222 34778888887776643110
Q ss_pred CCccccccCCCccEEeeccCCcccccch------hHHHhccccccEEeeccCc
Q 039180 696 LLPFMLSRFQSLTRLIVRSCPKLKYIFS------ASMIQNFELLRELSIADCR 742 (790)
Q Consensus 696 ~~~~~~~~l~~L~~L~L~~~~~l~~~~~------~~~~~~l~~L~~L~l~~c~ 742 (790)
.....+..+++|+.|++++|. +..+.. ...+..+++|+.|++++++
T Consensus 244 ~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 244 NLKLLKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHTTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHHhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 011234566778888887773 222211 1123456667777777764
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.70 E-value=3.9e-17 Score=173.88 Aligned_cols=231 Identities=13% Similarity=0.139 Sum_probs=172.4
Q ss_pred cCCCCCCCCCChhhhccCCceEEEEecCccccCCCh-hhhhccccceeeccCccccc-cchhhhhccCcccE-EeccCCC
Q 039180 483 PNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLPS-SIYLLVNLQTLCLDQSILRD-IDIAIIGKLKNLKI-LSFVRSD 559 (790)
Q Consensus 483 ~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~-l~p~~i~~l~~L~~-L~L~~~~ 559 (790)
+++.+. .+|.++ .++++.|+|++|.++.+|. .|.++++|++|+|++|.+.+ +.+..|.++++|++ +.+.+|+
T Consensus 17 ~~~~Lt--~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 17 QESKVT--EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp ESTTCC--SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred cCCCCC--ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 344555 688765 3578999999999998875 58899999999999999744 43456788888775 5666688
Q ss_pred Ccccc-hhhhcccccceecCCccccccccCchhhccccccceEecccCCccchhhcccccccccccccccCC-CCCcEEE
Q 039180 560 IVQLP-KALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNL-PWLTTLE 637 (790)
Q Consensus 560 l~~lp-~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~ 637 (790)
++.+| ..+..+++|++|++++| .+..+++..+....++..|++.++.....+ ....+..+ ..++.|+
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l----------~~~~f~~~~~~l~~L~ 160 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTI----------ERNSFVGLSFESVILW 160 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEE----------CTTSSTTSBSSCEEEE
T ss_pred ccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccc----------cccchhhcchhhhhhc
Confidence 88775 45788999999999998 677777765666777888888664321111 12233444 3688899
Q ss_pred EEecCCCCCCcccc-ccccceeEEEe-cCCCCCCC-ccccCCccCeeeccceecceecccCCCccccccCCCccEEeecc
Q 039180 638 IDVKNDSILPESFL-TQKLERFKISI-GNESFMPS-QSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRS 714 (790)
Q Consensus 638 l~~~~~~~~~~~~~-~~~L~~L~l~~-~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~ 714 (790)
+++|.+..++...+ ..+|+.|.+.. |.+..++. .+..+++|+.|++++|+++.+ + ...+.+|+.|.+.+
T Consensus 161 L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l-----p---~~~~~~L~~L~~l~ 232 (350)
T 4ay9_X 161 LNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL-----P---SYGLENLKKLRARS 232 (350)
T ss_dssp CCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCC-----C---SSSCTTCCEEECTT
T ss_pred cccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCcc-----C---hhhhccchHhhhcc
Confidence 99999888776654 56788888874 56666665 567889999999999988865 3 24578888888888
Q ss_pred CCcccccchhHHHhccccccEEeecc
Q 039180 715 CPKLKYIFSASMIQNFELLRELSIAD 740 (790)
Q Consensus 715 ~~~l~~~~~~~~~~~l~~L~~L~l~~ 740 (790)
|..++.+|. +..|++|+.+++.+
T Consensus 233 ~~~l~~lP~---l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 233 TYNLKKLPT---LEKLVALMEASLTY 255 (350)
T ss_dssp CTTCCCCCC---TTTCCSCCEEECSC
T ss_pred CCCcCcCCC---chhCcChhhCcCCC
Confidence 888888864 67889999998865
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.69 E-value=6.7e-18 Score=182.67 Aligned_cols=255 Identities=18% Similarity=0.156 Sum_probs=183.9
Q ss_pred CceEEEEecCccccCCChhhhhccccceeeccCccccccchhh----hhccCcccEEeccCCCCc----ccchhh-----
Q 039180 501 KKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAI----IGKLKNLKILSFVRSDIV----QLPKAL----- 567 (790)
Q Consensus 501 ~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~----i~~l~~L~~L~L~~~~l~----~lp~~l----- 567 (790)
+.|++..++...+..++..+..+++|++|+|++|.++...+.. +..+++|++|+|++|.+. .+|..+
T Consensus 9 ~~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~ 88 (386)
T 2ca6_A 9 KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ 88 (386)
T ss_dssp CCCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHH
Confidence 3455555555666688899999999999999999988754444 668999999999998554 445554
Q ss_pred --hcccccceecCCccccccc-----cCchhhccccccceEecccCCccchhhcccccccccccccccCC---------C
Q 039180 568 --GELTKLRLSDLTDCFHLKV-----IAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNL---------P 631 (790)
Q Consensus 568 --~~l~~L~~L~l~~~~~l~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l---------~ 631 (790)
..+++|++|++++| .++. ++ ..+.++++|++|++++|.+..... ......+..+ +
T Consensus 89 ~l~~~~~L~~L~Ls~n-~l~~~~~~~l~-~~l~~~~~L~~L~L~~n~l~~~~~-------~~l~~~l~~l~~~~~~~~~~ 159 (386)
T 2ca6_A 89 ALLKCPKLHTVRLSDN-AFGPTAQEPLI-DFLSKHTPLEHLYLHNNGLGPQAG-------AKIARALQELAVNKKAKNAP 159 (386)
T ss_dssp HHTTCTTCCEEECCSC-CCCTTTHHHHH-HHHHHCTTCCEEECCSSCCHHHHH-------HHHHHHHHHHHHHHHHHTCC
T ss_pred HHhhCCcccEEECCCC-cCCHHHHHHHH-HHHHhCCCCCEEECcCCCCCHHHH-------HHHHHHHHHHhhhhhcccCC
Confidence 68899999999998 5554 43 347899999999999998742211 1122234444 8
Q ss_pred CCcEEEEEecCCC--CCCc---cc-cccccceeEEEecCCCC------CCCccccCCccCeeeccceecceecccCCCcc
Q 039180 632 WLTTLEIDVKNDS--ILPE---SF-LTQKLERFKISIGNESF------MPSQSVELPNLEALELCAINVDKIWHYNLLPF 699 (790)
Q Consensus 632 ~L~~L~l~~~~~~--~~~~---~~-~~~~L~~L~l~~~~~~~------~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~ 699 (790)
+|+.|++++|.+. .++. .+ .+++|+.|++++|.+.. .+..+..+++|+.|+|++|.++... ....|.
T Consensus 160 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g-~~~l~~ 238 (386)
T 2ca6_A 160 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG-SSALAI 238 (386)
T ss_dssp CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH-HHHHHH
T ss_pred CCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH-HHHHHH
Confidence 9999999999875 3332 11 36799999999998762 2225668899999999999885311 011355
Q ss_pred ccccCCCccEEeeccCCcccccchh---HHH--hccccccEEeeccCchhhh-----HhhcCCCCCCCCcccCCccceee
Q 039180 700 MLSRFQSLTRLIVRSCPKLKYIFSA---SMI--QNFELLRELSIADCRGLRE-----IISKDRADHVTPCFVFPQMTTLR 769 (790)
Q Consensus 700 ~~~~l~~L~~L~L~~~~~l~~~~~~---~~~--~~l~~L~~L~l~~c~~l~~-----~~~~~~~~~~~~~~~~p~L~~L~ 769 (790)
.+..+++|+.|+|++|. ++..... ..+ ..+++|+.|++++|. +.. ++.... ..+|+|++|+
T Consensus 239 ~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~-------~~l~~L~~L~ 309 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVID-------EKMPDLLFLE 309 (386)
T ss_dssp HGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHH-------HHCTTCCEEE
T ss_pred HHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHH-------hcCCCceEEE
Confidence 67889999999999995 5554211 233 238999999999985 444 444221 1379999999
Q ss_pred ccccc
Q 039180 770 LEILP 774 (790)
Q Consensus 770 l~~c~ 774 (790)
+++|+
T Consensus 310 l~~N~ 314 (386)
T 2ca6_A 310 LNGNR 314 (386)
T ss_dssp CTTSB
T ss_pred ccCCc
Confidence 99986
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.69 E-value=1.6e-17 Score=176.11 Aligned_cols=214 Identities=15% Similarity=0.172 Sum_probs=148.6
Q ss_pred hhhhccC--CceEEEEecCccccCCChhhhhccccceeeccCcccccc-chhhhhccCcccEEeccCCCCc-ccchhhhc
Q 039180 494 ENFFKGV--KKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDI-DIAIIGKLKNLKILSFVRSDIV-QLPKALGE 569 (790)
Q Consensus 494 ~~~~~~l--~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l-~p~~i~~l~~L~~L~L~~~~l~-~lp~~l~~ 569 (790)
+..+..+ ++++.|++++|.+...+..+..+++|++|++++|.++.. .|..+..+++|++|++++|.++ ..|..++.
T Consensus 61 ~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~ 140 (336)
T 2ast_B 61 PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK 140 (336)
T ss_dssp HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT
T ss_pred HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc
Confidence 4455566 788888888888776655667788888888888887653 3777788888888888888777 56677778
Q ss_pred ccccceecCCcccccccc-CchhhccccccceEecccC-CccchhhcccccccccccccccCCC-CCcEEEEEecCCCCC
Q 039180 570 LTKLRLSDLTDCFHLKVI-APNVISSLTRLEELYMGNC-PIEWEVERANSERSNSSLDELMNLP-WLTTLEIDVKNDSIL 646 (790)
Q Consensus 570 l~~L~~L~l~~~~~l~~~-~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~ 646 (790)
+++|++|++++|..++.. .+..+.++++|++|++++| .+.. ...+..+..++ +|+.|++++|... +
T Consensus 141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~----------~~~~~~~~~l~~~L~~L~l~~~~~~-~ 209 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE----------KHVQVAVAHVSETITQLNLSGYRKN-L 209 (336)
T ss_dssp CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH----------HHHHHHHHHSCTTCCEEECCSCGGG-S
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh----------HHHHHHHHhcccCCCEEEeCCCccc-C
Confidence 888888888887555531 2333677888888888887 5531 11234456677 7777777765310 0
Q ss_pred CccccccccceeEEEecCCCCCCCccccCCccCeeecccee-cceecccCCCccccccCCCccEEeeccCCcccccchhH
Q 039180 647 PESFLTQKLERFKISIGNESFMPSQSVELPNLEALELCAIN-VDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSAS 725 (790)
Q Consensus 647 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~ 725 (790)
.. ...+.....+++|+.|++++|. +++. .+..+..+++|+.|++++|..+.... ..
T Consensus 210 ~~-----------------~~l~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~-~~ 266 (336)
T 2ast_B 210 QK-----------------SDLSTLVRRCPNLVHLDLSDSVMLKND-----CFQEFFQLNYLQHLSLSRCYDIIPET-LL 266 (336)
T ss_dssp CH-----------------HHHHHHHHHCTTCSEEECTTCTTCCGG-----GGGGGGGCTTCCEEECTTCTTCCGGG-GG
T ss_pred CH-----------------HHHHHHHhhCCCCCEEeCCCCCcCCHH-----HHHHHhCCCCCCEeeCCCCCCCCHHH-HH
Confidence 00 0011123568999999999996 5532 24457889999999999997554432 23
Q ss_pred HHhccccccEEeeccC
Q 039180 726 MIQNFELLRELSIADC 741 (790)
Q Consensus 726 ~~~~l~~L~~L~l~~c 741 (790)
.+..+++|+.|++++|
T Consensus 267 ~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 267 ELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGCTTCCEEECTTS
T ss_pred HHhcCCCCCEEeccCc
Confidence 4678999999999998
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.69 E-value=1.5e-16 Score=160.83 Aligned_cols=176 Identities=21% Similarity=0.270 Sum_probs=113.2
Q ss_pred CceEEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccch-hhhcccccceecCC
Q 039180 501 KKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPK-ALGELTKLRLSDLT 579 (790)
Q Consensus 501 ~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~ 579 (790)
...+.++++++.++.+|..+. .+|++|+|++|.++.+.+..++++++|++|+|++|.++.++. .+..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 345667777777777776554 467777777777777656667777777777777777775544 35677777777777
Q ss_pred ccccccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCccccccccceeE
Q 039180 580 DCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFLTQKLERFK 659 (790)
Q Consensus 580 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~ 659 (790)
+| .++.+++..++.+++|++|++++|.+.. .....+..+++|+.|++++|.+..++..
T Consensus 92 ~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---------- 149 (251)
T 3m19_A 92 NN-QLASLPLGVFDHLTQLDKLYLGGNQLKS-----------LPSGVFDRLTKLKELRLNTNQLQSIPAG---------- 149 (251)
T ss_dssp TS-CCCCCCTTTTTTCTTCCEEECCSSCCCC-----------CCTTTTTTCTTCCEEECCSSCCCCCCTT----------
T ss_pred CC-cccccChhHhcccCCCCEEEcCCCcCCC-----------cChhHhccCCcccEEECcCCcCCccCHH----------
Confidence 76 5666666666777777777777776531 1122345566666666666665544432
Q ss_pred EEecCCCCCCCccccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCC
Q 039180 660 ISIGNESFMPSQSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCP 716 (790)
Q Consensus 660 l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~ 716 (790)
.+..+++|+.|++++|.++.+ ++..+..+++|+.|+|++|+
T Consensus 150 -----------~~~~l~~L~~L~L~~N~l~~~-----~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 150 -----------AFDKLTNLQTLSLSTNQLQSV-----PHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp -----------TTTTCTTCCEEECCSSCCSCC-----CTTTTTTCTTCCEEECCSCC
T ss_pred -----------HcCcCcCCCEEECCCCcCCcc-----CHHHHhCCCCCCEEEeeCCc
Confidence 234456666666666666543 34445666777777777765
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.68 E-value=2.2e-17 Score=175.11 Aligned_cols=251 Identities=14% Similarity=0.113 Sum_probs=173.1
Q ss_pred ceeEEEeecccccCCCCcc-Cc--cccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccC--CChhhhhccccc
Q 039180 453 KYLAISLINSRINDIPEGL-ES--AQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSS--LPSSIYLLVNLQ 527 (790)
Q Consensus 453 ~l~~l~l~~~~~~~l~~~~-~~--~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~--lp~~~~~l~~L~ 527 (790)
.+++++++++.+. +..+ .. +.++.+.+.++ .+. ..+..+ ..+++|++|++++|.+.. +|..+..+++|+
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n-~l~--~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRS-FMD--QPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTC-EEC--SCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCc-ccc--ccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 4678888877654 2222 22 55666655444 444 233334 479999999999999873 788899999999
Q ss_pred eeeccCccccccchhhhhccCcccEEeccCC-CCc--ccchhhhcccccceecCCcccccccc-Cchhhcccc-ccceEe
Q 039180 528 TLCLDQSILRDIDIAIIGKLKNLKILSFVRS-DIV--QLPKALGELTKLRLSDLTDCFHLKVI-APNVISSLT-RLEELY 602 (790)
Q Consensus 528 ~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~-~l~--~lp~~l~~l~~L~~L~l~~~~~l~~~-~~~~l~~l~-~L~~L~ 602 (790)
+|++++|.+++..|..++.+++|++|++++| .++ .+|..+..+++|++|++++|..++.. .+..+.+++ +|++|+
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 9999999998766889999999999999999 787 47888899999999999998555542 234478899 999999
Q ss_pred cccCCccchhhcccccccccccccccCCCCCcEEEEEecC-CCCCCccccccccceeEEEecCCCCCCCccccCCccCee
Q 039180 603 MGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKN-DSILPESFLTQKLERFKISIGNESFMPSQSVELPNLEAL 681 (790)
Q Consensus 603 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 681 (790)
+++|.+.. .....+..+..+++|+.|++++|. ++... +..+..+++|+.|
T Consensus 202 l~~~~~~~--------~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~---------------------~~~l~~l~~L~~L 252 (336)
T 2ast_B 202 LSGYRKNL--------QKSDLSTLVRRCPNLVHLDLSDSVMLKNDC---------------------FQEFFQLNYLQHL 252 (336)
T ss_dssp CCSCGGGS--------CHHHHHHHHHHCTTCSEEECTTCTTCCGGG---------------------GGGGGGCTTCCEE
T ss_pred eCCCcccC--------CHHHHHHHHhhCCCCCEEeCCCCCcCCHHH---------------------HHHHhCCCCCCEe
Confidence 99994210 112234556678889999888776 22110 1123456889999
Q ss_pred eccce-ecceecccCCCccccccCCCccEEeeccCCcccccchhHHHhccccccEEeeccCchhhhHhh
Q 039180 682 ELCAI-NVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFELLRELSIADCRGLREIIS 749 (790)
Q Consensus 682 ~l~~~-~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 749 (790)
++++| .+... ....+..+++|+.|++++| +.+-....... +|+.|+++++ .++.+..
T Consensus 253 ~l~~~~~~~~~-----~~~~l~~~~~L~~L~l~~~--i~~~~~~~l~~---~l~~L~l~~n-~l~~~~~ 310 (336)
T 2ast_B 253 SLSRCYDIIPE-----TLLELGEIPTLKTLQVFGI--VPDGTLQLLKE---ALPHLQINCS-HFTTIAR 310 (336)
T ss_dssp ECTTCTTCCGG-----GGGGGGGCTTCCEEECTTS--SCTTCHHHHHH---HSTTSEESCC-CSCCTTC
T ss_pred eCCCCCCCCHH-----HHHHHhcCCCCCEEeccCc--cCHHHHHHHHh---hCcceEEecc-cCccccC
Confidence 99988 44321 0124677999999999999 44321111222 3555556654 4554443
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.68 E-value=3.1e-17 Score=171.61 Aligned_cols=224 Identities=12% Similarity=0.074 Sum_probs=160.3
Q ss_pred cCCceEEEEecCccccC--CCh--hhhhccccceeeccCccccccchhhh--hccCcccEEeccCCCCcc-cc----hhh
Q 039180 499 GVKKLRVVALVKMLLSS--LPS--SIYLLVNLQTLCLDQSILRDIDIAII--GKLKNLKILSFVRSDIVQ-LP----KAL 567 (790)
Q Consensus 499 ~l~~L~~L~L~~~~~~~--lp~--~~~~l~~L~~L~L~~~~l~~l~p~~i--~~l~~L~~L~L~~~~l~~-lp----~~l 567 (790)
....++.|.+.++.+.. +.. .+..+++|++|++++|.+.+..|..+ +.+++|++|++++|.++. .| ..+
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 33457888888887652 211 22346779999999999988778877 899999999999998884 22 334
Q ss_pred hcccccceecCCccccccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCC
Q 039180 568 GELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILP 647 (790)
Q Consensus 568 ~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 647 (790)
..+++|++|++++| .+..+++..++++++|++|++++|.+..... -.....++.+++|+.|++++|.+..++
T Consensus 142 ~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------~~~~~~~~~l~~L~~L~Ls~N~l~~l~ 213 (310)
T 4glp_A 142 WLKPGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLSDNPGLGERG-------LMAALCPHKFPAIQNLALRNTGMETPT 213 (310)
T ss_dssp TBCSCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECCSCTTCHHHH-------HHTTSCTTSSCCCCSCBCCSSCCCCHH
T ss_pred hhccCCCEEEeeCC-CcchhhHHHhccCCCCCEEECCCCCCccchh-------hhHHHhhhcCCCCCEEECCCCCCCchH
Confidence 67999999999998 6788887778999999999999998642210 001122467889999999999887665
Q ss_pred cc---c--cccccceeEEEecCCCCC-CCccccC---CccCeeeccceecceecccCCCccccccCCCccEEeeccCCcc
Q 039180 648 ES---F--LTQKLERFKISIGNESFM-PSQSVEL---PNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKL 718 (790)
Q Consensus 648 ~~---~--~~~~L~~L~l~~~~~~~~-~~~~~~l---~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l 718 (790)
.. . .+++|+.|++++|.+... |..+..+ ++|++|++++|.++.+ |..+ +++|+.|+|++| .+
T Consensus 214 ~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l------p~~~--~~~L~~L~Ls~N-~l 284 (310)
T 4glp_A 214 GVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV------PKGL--PAKLRVLDLSSN-RL 284 (310)
T ss_dssp HHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC------CSCC--CSCCSCEECCSC-CC
T ss_pred HHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch------hhhh--cCCCCEEECCCC-cC
Confidence 43 1 357788888888877665 3333333 6888888888877754 3323 378888888887 45
Q ss_pred cccchhHHHhccccccEEeeccCc
Q 039180 719 KYIFSASMIQNFELLRELSIADCR 742 (790)
Q Consensus 719 ~~~~~~~~~~~l~~L~~L~l~~c~ 742 (790)
+.++. +..+++|+.|++++++
T Consensus 285 ~~~~~---~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 285 NRAPQ---PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CSCCC---TTSCCCCSCEECSSTT
T ss_pred CCCch---hhhCCCccEEECcCCC
Confidence 55532 4567777777777754
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.67 E-value=4.6e-16 Score=157.22 Aligned_cols=176 Identities=21% Similarity=0.292 Sum_probs=126.5
Q ss_pred ceeEEEeecccccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCC-Chhhhhccccceeec
Q 039180 453 KYLAISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSL-PSSIYLLVNLQTLCL 531 (790)
Q Consensus 453 ~l~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L 531 (790)
..++++++++.+..+|..+. +.++.|.+. ++.+. .++...|.++++|++|+|++|.+..+ |..+..+++|++|+|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~-~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQ-STGLA--TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECT-TSCCC--CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEcc-CCCcC--ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45678888888888887553 455555444 34444 46665667888888888888888766 445778888888888
Q ss_pred cCccccccchhhhhccCcccEEeccCCCCcccchh-hhcccccceecCCccccccccCchhhccccccceEecccCCccc
Q 039180 532 DQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKA-LGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEW 610 (790)
Q Consensus 532 ~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 610 (790)
++|.++.+.+..+..+++|++|+|++|.++.+|.. +..+++|++|++++| .++.+++..++++++|++|++++|.+.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~- 168 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQ- 168 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS-
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCC-
Confidence 88888877666677888888888888888877665 477888888888887 677777766778888888888888763
Q ss_pred hhhcccccccccccccccCCCCCcEEEEEecCCC
Q 039180 611 EVERANSERSNSSLDELMNLPWLTTLEIDVKNDS 644 (790)
Q Consensus 611 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 644 (790)
...+..+..+++|+.|++++|...
T Consensus 169 ----------~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 169 ----------SVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp ----------CCCTTTTTTCTTCCEEECCSCCBC
T ss_pred ----------ccCHHHHhCCCCCCEEEeeCCcee
Confidence 112345667777888888777654
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.66 E-value=2.5e-16 Score=162.64 Aligned_cols=171 Identities=26% Similarity=0.286 Sum_probs=102.5
Q ss_pred ccCCceEEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceec
Q 039180 498 KGVKKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSD 577 (790)
Q Consensus 498 ~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~ 577 (790)
..+++|+.|++++|.+..++ .+..+++|++|++++|.++++ +. ++++++|++|++++|.++.+|. +..+++|++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred hhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEE
Confidence 45666777777777666664 366677777777777776665 33 6677777777777776666554 66677777777
Q ss_pred CCccccccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCccccccccce
Q 039180 578 LTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFLTQKLER 657 (790)
Q Consensus 578 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~ 657 (790)
+++| .++.++ .+..+++|+.|++++|.+.. ...+..+++|+.|++++|.+..++....+++|+.
T Consensus 119 L~~n-~i~~~~--~l~~l~~L~~L~l~~n~l~~-------------~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~ 182 (291)
T 1h6t_A 119 LEHN-GISDIN--GLVHLPQLESLYLGNNKITD-------------ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 182 (291)
T ss_dssp CTTS-CCCCCG--GGGGCTTCCEEECCSSCCCC-------------CGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCE
T ss_pred CCCC-cCCCCh--hhcCCCCCCEEEccCCcCCc-------------chhhccCCCCCEEEccCCccccchhhcCCCccCE
Confidence 7776 455543 25666777777777666531 1345566666666666666555544333445555
Q ss_pred eEEEecCCCCCCCccccCCccCeeeccceecc
Q 039180 658 FKISIGNESFMPSQSVELPNLEALELCAINVD 689 (790)
Q Consensus 658 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 689 (790)
|++++|.+...+. +..+++|+.|++++|.+.
T Consensus 183 L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 183 LYLSKNHISDLRA-LAGLKNLDVLELFSQECL 213 (291)
T ss_dssp EECCSSCCCBCGG-GTTCTTCSEEEEEEEEEE
T ss_pred EECCCCcCCCChh-hccCCCCCEEECcCCccc
Confidence 5555554443332 344555555555555444
No 96
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.65 E-value=8.2e-17 Score=184.88 Aligned_cols=221 Identities=16% Similarity=0.165 Sum_probs=111.6
Q ss_pred eEEEEecCcc-cc--CCChhhhhccccceeeccCcccccc----chhhhhccCcccEEeccCCCCc-----ccchhhhcc
Q 039180 503 LRVVALVKML-LS--SLPSSIYLLVNLQTLCLDQSILRDI----DIAIIGKLKNLKILSFVRSDIV-----QLPKALGEL 570 (790)
Q Consensus 503 L~~L~L~~~~-~~--~lp~~~~~l~~L~~L~L~~~~l~~l----~p~~i~~l~~L~~L~L~~~~l~-----~lp~~l~~l 570 (790)
|++|+|++|. +. .++..+..+++|++|+|++|.+++. .+..+..+++|++|++++|.++ .++..+.++
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 6666666654 21 2233334566666666666665433 1333445666666666666553 334444566
Q ss_pred cccceecCCccccccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCccc
Q 039180 571 TKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESF 650 (790)
Q Consensus 571 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 650 (790)
++|++|++++| .+..++ ..+.++++|++|+++.+.... ........+..+++|+.|++..+....++...
T Consensus 220 ~~L~~L~L~~~-~~~~l~-~~~~~~~~L~~L~l~~~~~~~--------~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~ 289 (592)
T 3ogk_B 220 RSLVSVKVGDF-EILELV-GFFKAAANLEEFCGGSLNEDI--------GMPEKYMNLVFPRKLCRLGLSYMGPNEMPILF 289 (592)
T ss_dssp TTCCEEECSSC-BGGGGH-HHHHHCTTCCEEEECBCCCCT--------TCTTSSSCCCCCTTCCEEEETTCCTTTGGGGG
T ss_pred CCCcEEeccCc-cHHHHH-HHHhhhhHHHhhccccccccc--------chHHHHHHhhccccccccCccccchhHHHHHH
Confidence 66666666665 344444 335666666666665432110 01122334555566666666554444444433
Q ss_pred c-ccccceeEEEecCCCCCCC--ccccCCccCeeeccceecceecccCCCccccccCCCccEEeecc----------CCc
Q 039180 651 L-TQKLERFKISIGNESFMPS--QSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRS----------CPK 717 (790)
Q Consensus 651 ~-~~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~----------~~~ 717 (790)
. +++|++|++++|.+..... ....+++|+.|+++++ +.+ ...+.....+++|++|+|++ |..
T Consensus 290 ~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~~~----~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~ 364 (592)
T 3ogk_B 290 PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGD----RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGL 364 (592)
T ss_dssp GGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHH----HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCC
T ss_pred hhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc-cCH----HHHHHHHHhCCCCCEEEeecCccccccccccCc
Confidence 2 5566666666665322111 2345566666666532 111 01122234556666666663 444
Q ss_pred ccccchhHHHhccccccEEee
Q 039180 718 LKYIFSASMIQNFELLRELSI 738 (790)
Q Consensus 718 l~~~~~~~~~~~l~~L~~L~l 738 (790)
++.........+|++|+.|++
T Consensus 365 ~~~~~~~~l~~~~~~L~~L~l 385 (592)
T 3ogk_B 365 VSQRGLIALAQGCQELEYMAV 385 (592)
T ss_dssp CCHHHHHHHHHHCTTCSEEEE
T ss_pred cCHHHHHHHHhhCccCeEEEe
Confidence 444322233445566666665
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.65 E-value=5.1e-16 Score=165.20 Aligned_cols=237 Identities=15% Similarity=0.165 Sum_probs=184.3
Q ss_pred EEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCc-ccch-hhhcccccceecCCcc
Q 039180 504 RVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIV-QLPK-ALGELTKLRLSDLTDC 581 (790)
Q Consensus 504 ~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~-~lp~-~l~~l~~L~~L~l~~~ 581 (790)
++++.++++++.+|..+ ..++++|+|++|.|+.+.+..|.++++|++|+|++|.+. .+|. .+.++++|.++...++
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 56888999999999877 468999999999999995567999999999999999875 5665 4678888887655555
Q ss_pred ccccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEec-CCCCCCcccc---ccccce
Q 039180 582 FHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVK-NDSILPESFL---TQKLER 657 (790)
Q Consensus 582 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~---~~~L~~ 657 (790)
+.+..+++..+..+++|++|++++|.+.... ...+....++..|++..+ .+..++...+ ...++.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~-----------~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~ 158 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLP-----------DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI 158 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCC-----------CCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEE
T ss_pred CcccccCchhhhhccccccccccccccccCC-----------chhhcccchhhhhhhccccccccccccchhhcchhhhh
Confidence 5889998888999999999999999874211 122334456778888754 4555554332 346888
Q ss_pred eEEEecCCCCCCCccccCCccCeeeccce-ecceecccCCCccccccCCCccEEeeccCCcccccchhHHHhccccccEE
Q 039180 658 FKISIGNESFMPSQSVELPNLEALELCAI-NVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFELLREL 736 (790)
Q Consensus 658 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L 736 (790)
|++++|.+..++......++|+.|.+.++ .++.+ ++..+..+++|+.|+|++| .++.+|. ..+.+|+.|
T Consensus 159 L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i-----~~~~f~~l~~L~~LdLs~N-~l~~lp~----~~~~~L~~L 228 (350)
T 4ay9_X 159 LWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEEL-----PNDVFHGASGPVILDISRT-RIHSLPS----YGLENLKKL 228 (350)
T ss_dssp EECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCC-----CTTTTTTEECCSEEECTTS-CCCCCCS----SSCTTCCEE
T ss_pred hccccccccCCChhhccccchhHHhhccCCcccCC-----CHHHhccCcccchhhcCCC-CcCccCh----hhhccchHh
Confidence 99999999888776556788999999865 77755 4556789999999999999 6888854 457888889
Q ss_pred eeccCchhhhHhhcCCCCCCCCcccCCccceeeccc
Q 039180 737 SIADCRGLREIISKDRADHVTPCFVFPQMTTLRLEI 772 (790)
Q Consensus 737 ~l~~c~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~ 772 (790)
.+.++..++.++.- . .+++|+.+++.+
T Consensus 229 ~~l~~~~l~~lP~l-~--------~l~~L~~l~l~~ 255 (350)
T 4ay9_X 229 RARSTYNLKKLPTL-E--------KLVALMEASLTY 255 (350)
T ss_dssp ECTTCTTCCCCCCT-T--------TCCSCCEEECSC
T ss_pred hhccCCCcCcCCCc-h--------hCcChhhCcCCC
Confidence 88888888877742 2 389999998864
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.65 E-value=3.2e-16 Score=175.47 Aligned_cols=180 Identities=19% Similarity=0.227 Sum_probs=142.8
Q ss_pred ceEEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceecCCcc
Q 039180 502 KLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSDLTDC 581 (790)
Q Consensus 502 ~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~ 581 (790)
+|+.|++++|.++.+|..+. ++|++|+|++|.++.+ | +.+++|++|++++|.++.+|. +.+ +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~i-p---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISL-P---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCccc-c---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 89999999999888887663 7899999999998876 6 567899999999999988887 655 8999999998
Q ss_pred ccccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCccccccccceeEEE
Q 039180 582 FHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFLTQKLERFKIS 661 (790)
Q Consensus 582 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 661 (790)
.++.+|. .+++|+.|++++|.+.. ++. .+++|+.|++++|.+..+|. +. ++|+.|+++
T Consensus 131 -~l~~lp~----~l~~L~~L~Ls~N~l~~------------lp~---~l~~L~~L~Ls~N~L~~lp~-l~-~~L~~L~Ls 188 (571)
T 3cvr_A 131 -QLTMLPE----LPALLEYINADNNQLTM------------LPE---LPTSLEVLSVRNNQLTFLPE-LP-ESLEALDVS 188 (571)
T ss_dssp -CCSCCCC----CCTTCCEEECCSSCCSC------------CCC---CCTTCCEEECCSSCCSCCCC-CC-TTCCEEECC
T ss_pred -cCCCCCC----cCccccEEeCCCCccCc------------CCC---cCCCcCEEECCCCCCCCcch-hh-CCCCEEECc
Confidence 6777765 57899999999988742 122 46789999999998888887 43 889999999
Q ss_pred ecCCCCCCCccccCCcc-------CeeeccceecceecccCCCccccccCCCccEEeeccCCccccc
Q 039180 662 IGNESFMPSQSVELPNL-------EALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYI 721 (790)
Q Consensus 662 ~~~~~~~~~~~~~l~~L-------~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~ 721 (790)
+|.+..+|. +.. +| +.|+|++|.++.+ |..+..+++|+.|+|++|+....+
T Consensus 189 ~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~l------p~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 189 TNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHI------PENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp SSCCSSCCC-CC----------CCEEEECCSSCCCCC------CGGGGGSCTTEEEECCSSSCCHHH
T ss_pred CCCCCchhh-HHH--hhhcccccceEEecCCCcceec------CHHHhcCCCCCEEEeeCCcCCCcC
Confidence 998887666 322 66 9999999988865 666777999999999999644443
No 99
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.64 E-value=2.5e-16 Score=180.88 Aligned_cols=228 Identities=19% Similarity=0.135 Sum_probs=114.5
Q ss_pred ccCCceEEEEecCccccCCChhhhhccccceeeccCccccccch-hhhhccCcccEEeccCCCCc--ccchhhhcccccc
Q 039180 498 KGVKKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDI-AIIGKLKNLKILSFVRSDIV--QLPKALGELTKLR 574 (790)
Q Consensus 498 ~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p-~~i~~l~~L~~L~L~~~~l~--~lp~~l~~l~~L~ 574 (790)
..+++|+.|+++++....+|..+..+++|++|+|++|.++...+ ..+..+++|++|+++++ +. .++.....+++|+
T Consensus 267 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCC
T ss_pred hccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc-cCHHHHHHHHHhCCCCC
Confidence 34555555555554444555556666666666666666543322 23456666666666622 22 3333345566666
Q ss_pred eecCCc----------cccccccC-chhhccccccceEecccCCccchhhcccccccccccccccC-CCCCcEEEEE---
Q 039180 575 LSDLTD----------CFHLKVIA-PNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMN-LPWLTTLEID--- 639 (790)
Q Consensus 575 ~L~l~~----------~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~--- 639 (790)
+|++++ |..++... ......+++|++|+++.+.+. ...+..+.. +++|+.|++.
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~-----------~~~~~~l~~~~~~L~~L~l~~~~ 414 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDIT-----------NESLESIGTYLKNLCDFRLVLLD 414 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCC-----------HHHHHHHHHHCCSCCEEEEEECS
T ss_pred EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCcc-----------HHHHHHHHhhCCCCcEEEEeecC
Confidence 666663 33333211 111234666666666544442 122333333 5666666665
Q ss_pred -ecCCCCCCcc------c-cccccceeEEEecCC--CCCCC--ccccCCccCeeeccceecceecccCCCccccccCCCc
Q 039180 640 -VKNDSILPES------F-LTQKLERFKISIGNE--SFMPS--QSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSL 707 (790)
Q Consensus 640 -~~~~~~~~~~------~-~~~~L~~L~l~~~~~--~~~~~--~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L 707 (790)
++.++..|.. . .+++|+.|+++.|.. ..... ....+++|+.|++++|++++. ..+..+..+++|
T Consensus 415 ~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~~~~~L 490 (592)
T 3ogk_B 415 REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE----GLMEFSRGCPNL 490 (592)
T ss_dssp CCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHH----HHHHHHTCCTTC
T ss_pred CCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHH----HHHHHHhcCccc
Confidence 2333333211 1 256666666654331 11100 112356666666666655431 123334556667
Q ss_pred cEEeeccCCcccccchhHHHhccccccEEeeccCc
Q 039180 708 TRLIVRSCPKLKYIFSASMIQNFELLRELSIADCR 742 (790)
Q Consensus 708 ~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~ 742 (790)
+.|+|++|+ +++.........+++|+.|++++|.
T Consensus 491 ~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 491 QKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 777777665 4443223344566667777776665
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.64 E-value=9.8e-16 Score=158.23 Aligned_cols=186 Identities=18% Similarity=0.178 Sum_probs=145.6
Q ss_pred eEEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceecCCccc
Q 039180 503 LRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSDLTDCF 582 (790)
Q Consensus 503 L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~ 582 (790)
+..+.+..+.+..+ ..+..+++|++|++++|.++.+ + .++.+++|++|++++|.++.++. +..+++|++|++++|
T Consensus 26 ~~~~~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n- 100 (291)
T 1h6t_A 26 TIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN- 100 (291)
T ss_dssp HHHHHTTCSCTTSE-ECHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-
T ss_pred HHHHHhcCCCcccc-cchhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-
Confidence 33344555555543 2456899999999999999886 4 48899999999999999998887 999999999999998
Q ss_pred cccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCccccccccceeEEEe
Q 039180 583 HLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFLTQKLERFKISI 662 (790)
Q Consensus 583 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~ 662 (790)
.++.++. ++.+++|++|++++|.+.. +..+..+++|+.|++++|.+..++....+++|+.|++++
T Consensus 101 ~l~~~~~--l~~l~~L~~L~L~~n~i~~-------------~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~ 165 (291)
T 1h6t_A 101 KVKDLSS--LKDLKKLKSLSLEHNGISD-------------INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLED 165 (291)
T ss_dssp CCCCGGG--GTTCTTCCEEECTTSCCCC-------------CGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCS
T ss_pred cCCCChh--hccCCCCCEEECCCCcCCC-------------ChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccC
Confidence 6777654 8999999999999998741 245778899999999999988775555577888888888
Q ss_pred cCCCCCCCccccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCC
Q 039180 663 GNESFMPSQSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCP 716 (790)
Q Consensus 663 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~ 716 (790)
|.+...+. +..+++|+.|++++|.++++ +. +..+++|+.|++++|+
T Consensus 166 N~l~~~~~-l~~l~~L~~L~L~~N~i~~l------~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 166 NQISDIVP-LAGLTKLQNLYLSKNHISDL------RA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp SCCCCCGG-GTTCTTCCEEECCSSCCCBC------GG-GTTCTTCSEEEEEEEE
T ss_pred Cccccchh-hcCCCccCEEECCCCcCCCC------hh-hccCCCCCEEECcCCc
Confidence 87766554 66777888888888877654 22 6677888888888774
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.63 E-value=6.4e-16 Score=175.05 Aligned_cols=170 Identities=27% Similarity=0.287 Sum_probs=80.0
Q ss_pred cCCceEEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceecC
Q 039180 499 GVKKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSDL 578 (790)
Q Consensus 499 ~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l 578 (790)
.+++|+.|++++|.+..+| .+..+++|++|+|++|.++++ +. ++.|++|++|+|++|.+..+| .+..+++|++|++
T Consensus 41 ~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDI-KP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEEC
T ss_pred cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCC-hh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEe
Confidence 4444555555555554443 344555555555555555444 22 445555555555555554443 3445555555555
Q ss_pred CccccccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCcccccccccee
Q 039180 579 TDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFLTQKLERF 658 (790)
Q Consensus 579 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L 658 (790)
++| .+..++. +..+++|+.|++++|.+.. +..+..+++|+.|+|++|.+..++....+++|+.|
T Consensus 117 s~N-~l~~l~~--l~~l~~L~~L~Ls~N~l~~-------------l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L 180 (605)
T 1m9s_A 117 EHN-GISDING--LVHLPQLESLYLGNNKITD-------------ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNL 180 (605)
T ss_dssp TTS-CCCCCGG--GGGCTTCSEEECCSSCCCC-------------CGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEE
T ss_pred cCC-CCCCCcc--ccCCCccCEEECCCCccCC-------------chhhcccCCCCEEECcCCcCCCchhhccCCCCCEE
Confidence 554 3333321 4455555555555554420 12344445555555555544444332234444445
Q ss_pred EEEecCCCCCCCccccCCccCeeeccceecc
Q 039180 659 KISIGNESFMPSQSVELPNLEALELCAINVD 689 (790)
Q Consensus 659 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 689 (790)
+|++|.+...+ .+..+++|+.|+|++|.+.
T Consensus 181 ~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 181 YLSKNHISDLR-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp ECCSSCCCBCG-GGTTCTTCSEEECCSEEEE
T ss_pred ECcCCCCCCCh-HHccCCCCCEEEccCCcCc
Confidence 54444444332 2344555555555555443
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.60 E-value=6.2e-16 Score=175.21 Aligned_cols=188 Identities=18% Similarity=0.175 Sum_probs=151.2
Q ss_pred CceEEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceecCCc
Q 039180 501 KKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSDLTD 580 (790)
Q Consensus 501 ~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~ 580 (790)
..+..+.+..+.+..++ .+..+.+|++|++++|.+..+ | .++.|++|+.|+|++|.+..+|. +..+++|++|++++
T Consensus 21 ~~l~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHHTTCSCTTSEE-CHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS
T ss_pred HHHHHHhccCCCccccc-chhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC
Confidence 34555566666666553 357899999999999999886 4 68999999999999999998887 89999999999999
Q ss_pred cccccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCccccccccceeEE
Q 039180 581 CFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFLTQKLERFKI 660 (790)
Q Consensus 581 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 660 (790)
| .+..++ .+..+++|+.|++++|.+.. +..+..+++|+.|+|++|.+..++....+++|+.|+|
T Consensus 97 N-~l~~l~--~l~~l~~L~~L~Ls~N~l~~-------------l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~L 160 (605)
T 1m9s_A 97 N-KIKDLS--SLKDLKKLKSLSLEHNGISD-------------INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSL 160 (605)
T ss_dssp S-CCCCCT--TSTTCTTCCEEECTTSCCCC-------------CGGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEEC
T ss_pred C-CCCCCh--hhccCCCCCEEEecCCCCCC-------------CccccCCCccCEEECCCCccCCchhhcccCCCCEEEC
Confidence 8 677765 38999999999999998741 3457889999999999999887765555788888888
Q ss_pred EecCCCCCCCccccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCC
Q 039180 661 SIGNESFMPSQSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCP 716 (790)
Q Consensus 661 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~ 716 (790)
++|.+...+. +..+++|+.|+|++|.++++ | .+..+++|+.|+|++|+
T Consensus 161 s~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l------~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 161 EDNQISDIVP-LAGLTKLQNLYLSKNHISDL------R-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CSSCCCCCGG-GTTCTTCCEEECCSSCCCBC------G-GGTTCTTCSEEECCSEE
T ss_pred cCCcCCCchh-hccCCCCCEEECcCCCCCCC------h-HHccCCCCCEEEccCCc
Confidence 8887776655 66778888888888877754 2 36778888888888874
No 103
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.60 E-value=2.1e-16 Score=181.51 Aligned_cols=131 Identities=21% Similarity=0.197 Sum_probs=74.5
Q ss_pred ccccceeecccCCCCCCCCCChhhhccCCceEEEEecCc-cccC--CChhhhhccccceeeccCccccccchhhhh----
Q 039180 473 SAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKM-LLSS--LPSSIYLLVNLQTLCLDQSILRDIDIAIIG---- 545 (790)
Q Consensus 473 ~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~-~~~~--lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~---- 545 (790)
++++++|.+.++. +.+ ..+..+...+++|++|++++| .++. ++..+.++++|++|+|++|.+++..+..+.
T Consensus 104 ~~~L~~L~L~~~~-~~~-~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 104 YTWLEEIRLKRMV-VTD-DCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp CTTCCEEEEESCB-CCH-HHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred CCCCCeEEeeCcE-EcH-HHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 4455555554442 211 122233335677777777776 4442 444555677777777777776554333333
Q ss_pred ccCcccEEeccCCC--Cc--ccchhhhcccccceecCCccccccccCchhhccccccceEecccC
Q 039180 546 KLKNLKILSFVRSD--IV--QLPKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNC 606 (790)
Q Consensus 546 ~l~~L~~L~L~~~~--l~--~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 606 (790)
.+++|++|++++|. +. .++..+..+++|++|++++|..++.++ ..+.++++|++|+++.+
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~-~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLA-TLLQRAPQLEELGTGGY 245 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHH-HHHHHCTTCSEEECSBC
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHH-HHHhcCCcceEcccccc
Confidence 45577777777764 22 233333456777777777765555543 33666777777776554
No 104
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.59 E-value=3.3e-16 Score=167.54 Aligned_cols=247 Identities=12% Similarity=0.091 Sum_probs=158.2
Q ss_pred eeccccc-CCCCccCccc-cceeecccCCCCCCCCCCh----hhhccCC-ceEEEEecCccccCC-Chhhhhc-----cc
Q 039180 459 LINSRIN-DIPEGLESAQ-LEFLLMIPNNSFLGPNIPE----NFFKGVK-KLRVVALVKMLLSSL-PSSIYLL-----VN 525 (790)
Q Consensus 459 l~~~~~~-~l~~~~~~~~-l~~l~~~~~~~~~~~~lp~----~~~~~l~-~L~~L~L~~~~~~~l-p~~~~~l-----~~ 525 (790)
++.+.+. .+|.....+. +++|.+ +++.+. ..+. ..+..++ +|++|+|++|.++.. +..+..+ ++
T Consensus 5 ls~n~~~~~~~~~~~~~~~L~~L~L-s~n~l~--~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 5 LTLHPGSNPVEEFTSIPHGVTSLDL-SLNNLY--SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp CCCCTTCCHHHHHHTSCTTCCEEEC-TTSCGG--GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccchHHHHHHHhCCCCceEEEc-cCCCCC--hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 3444443 2333334444 444433 333344 3444 4567777 899999999888754 5666665 88
Q ss_pred cceeeccCccccccchhhhhcc-----CcccEEeccCCCCcccch-h----hhc-ccccceecCCccccccccCc----h
Q 039180 526 LQTLCLDQSILRDIDIAIIGKL-----KNLKILSFVRSDIVQLPK-A----LGE-LTKLRLSDLTDCFHLKVIAP----N 590 (790)
Q Consensus 526 L~~L~L~~~~l~~l~p~~i~~l-----~~L~~L~L~~~~l~~lp~-~----l~~-l~~L~~L~l~~~~~l~~~~~----~ 590 (790)
|++|+|++|.++...+..++.. ++|++|++++|.++..+. . +.. .++|++|++++| .++.... .
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~ 160 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQ 160 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHH
Confidence 9999999998887656655443 789999999998875543 2 233 358899999887 5553222 1
Q ss_pred hhcccc-ccceEecccCCccchhhcccccccccccccccCC-CCCcEEEEEecCCCC-----CCcccc--ccccceeEEE
Q 039180 591 VISSLT-RLEELYMGNCPIEWEVERANSERSNSSLDELMNL-PWLTTLEIDVKNDSI-----LPESFL--TQKLERFKIS 661 (790)
Q Consensus 591 ~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~-----~~~~~~--~~~L~~L~l~ 661 (790)
.+..++ +|++|++++|.+..... ......+..+ ++|+.|++++|.+.. ++..+. .++|+.|+++
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~-------~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls 233 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNC-------AELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLC 233 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCH-------HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECC
T ss_pred HHhcCCccccEeeecCCCCchhhH-------HHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECc
Confidence 234555 89999998887742110 1122344555 489999998888655 333332 3589999999
Q ss_pred ecCCCCCCC-----ccccCCccCeeeccceecceeccc--CCCccccccCCCccEEeeccCC
Q 039180 662 IGNESFMPS-----QSVELPNLEALELCAINVDKIWHY--NLLPFMLSRFQSLTRLIVRSCP 716 (790)
Q Consensus 662 ~~~~~~~~~-----~~~~l~~L~~L~l~~~~l~~l~~~--~~~~~~~~~l~~L~~L~L~~~~ 716 (790)
+|.+...+. ....+++|+.|++++|.+..+... ...+..+..+++|+.|++++|+
T Consensus 234 ~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 234 LNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp SSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 888776543 346678999999999975443110 1113345678889999999995
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.59 E-value=2.7e-15 Score=145.43 Aligned_cols=148 Identities=20% Similarity=0.212 Sum_probs=102.5
Q ss_pred ccCCceEEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcc-cchhhhccccccee
Q 039180 498 KGVKKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQ-LPKALGELTKLRLS 576 (790)
Q Consensus 498 ~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L 576 (790)
..+++|+.|++++|.+..+| .+..+++|++|++++|.++. ++.+..+++|++|++++|.++. .|..+..+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 56677888888888888777 67888888888888887766 4467788888888888888773 66777888888888
Q ss_pred cCCccccccccCchhhccccccceEecccCC-ccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCcccccccc
Q 039180 577 DLTDCFHLKVIAPNVISSLTRLEELYMGNCP-IEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFLTQKL 655 (790)
Q Consensus 577 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L 655 (790)
++++| .+....+..++++++|++|++++|. +. . +..+..+++|+.|++++|.+..++....+++|
T Consensus 118 ~Ls~n-~i~~~~~~~l~~l~~L~~L~L~~n~~i~------------~-~~~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L 183 (197)
T 4ezg_A 118 DISHS-AHDDSILTKINTLPKVNSIDLSYNGAIT------------D-IMPLKTLPELKSLNIQFDGVHDYRGIEDFPKL 183 (197)
T ss_dssp ECCSS-BCBGGGHHHHTTCSSCCEEECCSCTBCC------------C-CGGGGGCSSCCEEECTTBCCCCCTTGGGCSSC
T ss_pred EecCC-ccCcHhHHHHhhCCCCCEEEccCCCCcc------------c-cHhhcCCCCCCEEECCCCCCcChHHhccCCCC
Confidence 88887 4554334447788888888888876 32 1 12466677777777777766655533223333
Q ss_pred ceeEEEe
Q 039180 656 ERFKISI 662 (790)
Q Consensus 656 ~~L~l~~ 662 (790)
+.|++++
T Consensus 184 ~~L~l~~ 190 (197)
T 4ezg_A 184 NQLYAFS 190 (197)
T ss_dssp CEEEECB
T ss_pred CEEEeeC
Confidence 3333333
No 106
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.59 E-value=1.5e-15 Score=174.46 Aligned_cols=304 Identities=15% Similarity=0.110 Sum_probs=155.2
Q ss_pred ccceeEEEeecccccC-----CCCcc-CccccceeecccCCCCCCCCCChh----hhccCCceEEEEecCc-cccCCChh
Q 039180 451 LKKYLAISLINSRIND-----IPEGL-ESAQLEFLLMIPNNSFLGPNIPEN----FFKGVKKLRVVALVKM-LLSSLPSS 519 (790)
Q Consensus 451 ~~~l~~l~l~~~~~~~-----l~~~~-~~~~l~~l~~~~~~~~~~~~lp~~----~~~~l~~L~~L~L~~~-~~~~lp~~ 519 (790)
.++++.+++++|.+.. ++... .++++++|.+..+. . .++.. +...+++|++|++++| .+..+|..
T Consensus 155 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~--~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~ 230 (594)
T 2p1m_B 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--S--EVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL 230 (594)
T ss_dssp CTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--S--CCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH
T ss_pred CCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--C--cCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH
Confidence 3567777777766433 22222 44566666655443 1 23322 2345677777777776 34456666
Q ss_pred hhhccccceeeccCcc-------ccccchhhhh------------------------ccCcccEEeccCCCCc--ccchh
Q 039180 520 IYLLVNLQTLCLDQSI-------LRDIDIAIIG------------------------KLKNLKILSFVRSDIV--QLPKA 566 (790)
Q Consensus 520 ~~~l~~L~~L~L~~~~-------l~~l~p~~i~------------------------~l~~L~~L~L~~~~l~--~lp~~ 566 (790)
+..+++|++|++..+. +.++ +..+. .+++|++|++++|.++ .++..
T Consensus 231 ~~~~~~L~~L~l~~~~~~~~~~~~~~l-~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~ 309 (594)
T 2p1m_B 231 LQRAPQLEELGTGGYTAEVRPDVYSGL-SVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKL 309 (594)
T ss_dssp HHHCTTCSEEECSBCCCCCCHHHHHHH-HHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHH
T ss_pred HhcCCcceEcccccccCccchhhHHHH-HHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHH
Confidence 6677777777644331 2222 22233 3445555555555433 12222
Q ss_pred hhcccccceecCCccccccccCchhhccccccceEecccCCccchhhccccccccccccccc-CCCCCcEEEEEecCCCC
Q 039180 567 LGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELM-NLPWLTTLEIDVKNDSI 645 (790)
Q Consensus 567 l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~ 645 (790)
+..+++|++|++++|. ...........+++|++|+++++.-.+ ....+..+...+..+. .+++|+.|.+.++.++.
T Consensus 310 ~~~~~~L~~L~l~~~~-~~~~l~~l~~~~~~L~~L~L~~~~~~g--~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~ 386 (594)
T 2p1m_B 310 LCQCPKLQRLWVLDYI-EDAGLEVLASTCKDLRELRVFPSEPFV--MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTN 386 (594)
T ss_dssp HTTCTTCCEEEEEGGG-HHHHHHHHHHHCTTCCEEEEECSCTTC--SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCH
T ss_pred HhcCCCcCEEeCcCcc-CHHHHHHHHHhCCCCCEEEEecCcccc--cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCH
Confidence 3344555555555441 111111112234555555553211000 0000000111122222 36778888776666543
Q ss_pred CCc-cc--cccccceeEEEe------cCCCCCCC------ccccCCccCeeeccceecceecccCCCccccccCCCccEE
Q 039180 646 LPE-SF--LTQKLERFKISI------GNESFMPS------QSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRL 710 (790)
Q Consensus 646 ~~~-~~--~~~~L~~L~l~~------~~~~~~~~------~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L 710 (790)
... .+ .+++|+.|+++. +.+...+. ....+++|+.|++++ .+++. .++.....+++|+.|
T Consensus 387 ~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~----~~~~l~~~~~~L~~L 461 (594)
T 2p1m_B 387 AALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK----VFEYIGTYAKKMEML 461 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHH----HHHHHHHHCTTCCEE
T ss_pred HHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHH----HHHHHHHhchhccEe
Confidence 211 11 267888888883 22222211 145577888888876 44321 111112237889999
Q ss_pred eeccCCcccccchhHHHhccccccEEeeccCchhhhHhhcCCCCCCCCcccCCccceeecccccc
Q 039180 711 IVRSCPKLKYIFSASMIQNFELLRELSIADCRGLREIISKDRADHVTPCFVFPQMTTLRLEILPE 775 (790)
Q Consensus 711 ~L~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~ 775 (790)
+|++|. +++........++++|+.|++++|+. +........ ..+|+|++|++++|+.
T Consensus 462 ~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~------~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 462 SVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANA------SKLETMRSLWMSSCSV 518 (594)
T ss_dssp EEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTG------GGGGGSSEEEEESSCC
T ss_pred eccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHH------HhCCCCCEEeeeCCCC
Confidence 999885 55543333446789999999999975 333322111 2489999999999875
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.57 E-value=1.4e-15 Score=154.37 Aligned_cols=148 Identities=18% Similarity=0.144 Sum_probs=91.9
Q ss_pred hccCCceEEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhhhccccccee
Q 039180 497 FKGVKKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLS 576 (790)
Q Consensus 497 ~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L 576 (790)
+..+++|++|++++|.++.+| .+..+++|++|+|++|.++++ +. ++++++|++|++++|.++.+|.... ++|++|
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L 111 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRL 111 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEE
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCCcCcccc--CcccEE
Confidence 456677777777777777666 566777777777777777766 33 6777777777777777766664332 677777
Q ss_pred cCCccccccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCccccccccc
Q 039180 577 DLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFLTQKLE 656 (790)
Q Consensus 577 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~ 656 (790)
++++| .++.++. ++++++|++|++++|.+.. ...+..+++|+.|++++|.+...+....+++|+
T Consensus 112 ~L~~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~~-------------~~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~ 175 (263)
T 1xeu_A 112 FLDNN-ELRDTDS--LIHLKNLEILSIRNNKLKS-------------IVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVN 175 (263)
T ss_dssp ECCSS-CCSBSGG--GTTCTTCCEEECTTSCCCB-------------CGGGGGCTTCCEEECTTSCCCBCTTSTTCCCCC
T ss_pred EccCC-ccCCChh--hcCcccccEEECCCCcCCC-------------ChHHccCCCCCEEECCCCcCcchHHhccCCCCC
Confidence 77776 5555532 6677777777777776531 124556666777776666655443222344444
Q ss_pred eeEEEecCC
Q 039180 657 RFKISIGNE 665 (790)
Q Consensus 657 ~L~l~~~~~ 665 (790)
.|++++|.+
T Consensus 176 ~L~l~~N~~ 184 (263)
T 1xeu_A 176 WIDLTGQKC 184 (263)
T ss_dssp EEEEEEEEE
T ss_pred EEeCCCCcc
Confidence 444444443
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.57 E-value=7e-15 Score=164.61 Aligned_cols=178 Identities=19% Similarity=0.237 Sum_probs=89.1
Q ss_pred ceeEEEeecccccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCCChhhhhccccceeecc
Q 039180 453 KYLAISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLPSSIYLLVNLQTLCLD 532 (790)
Q Consensus 453 ~l~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~ 532 (790)
+++.+++++|.+..+|..+. ++|++|+|++|.++.+| ..+++|++|+|+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~----------------------------~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls 108 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP----------------------------PQITVLEITQNALISLP---ELPASLEYLDAC 108 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC----------------------------TTCSEEECCSSCCSCCC---CCCTTCCEEECC
T ss_pred CccEEEeCCCCCCccCHhHc----------------------------CCCCEEECcCCCCcccc---cccCCCCEEEcc
Confidence 67778888777776665331 33444455555444444 234445555555
Q ss_pred CccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceecCCccccccccCchhhccccccceEecccCCccchh
Q 039180 533 QSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEV 612 (790)
Q Consensus 533 ~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 612 (790)
+|.++++ |. +++ +|++|+|++|.++.+|. .+++|++|++++| .++.+|. .+++|++|++++|.+..
T Consensus 109 ~N~l~~i-p~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N~L~~-- 174 (571)
T 3cvr_A 109 DNRLSTL-PE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNN-QLTMLPE----LPTSLEVLSVRNNQLTF-- 174 (571)
T ss_dssp SSCCSCC-CC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSC--
T ss_pred CCCCCCc-ch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCC-ccCcCCC----cCCCcCEEECCCCCCCC--
Confidence 5544443 33 332 45555555554444444 3444555555544 3343433 23445555555544421
Q ss_pred hcccccccccccccccCCCCCcEEEEEecCCCCCCcccccccc-------ceeEEEecCCCCCCCccccCCccCeeeccc
Q 039180 613 ERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFLTQKL-------ERFKISIGNESFMPSQSVELPNLEALELCA 685 (790)
Q Consensus 613 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~ 685 (790)
++. +. ++|+.|++++|.+..+|. + ..+| +.|++++|.+..+|..+..+++|+.|+|++
T Consensus 175 ----------lp~-l~--~~L~~L~Ls~N~L~~lp~-~-~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~ 239 (571)
T 3cvr_A 175 ----------LPE-LP--ESLEALDVSTNLLESLPA-V-PVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILED 239 (571)
T ss_dssp ----------CCC-CC--TTCCEEECCSSCCSSCCC-C-C--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCS
T ss_pred ----------cch-hh--CCCCEEECcCCCCCchhh-H-HHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeC
Confidence 111 22 445555555555444444 1 1244 666666666665555445577777777777
Q ss_pred eecce
Q 039180 686 INVDK 690 (790)
Q Consensus 686 ~~l~~ 690 (790)
|.++.
T Consensus 240 N~l~~ 244 (571)
T 3cvr_A 240 NPLSS 244 (571)
T ss_dssp SSCCH
T ss_pred CcCCC
Confidence 76653
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.57 E-value=1.6e-14 Score=143.34 Aligned_cols=152 Identities=22% Similarity=0.332 Sum_probs=108.6
Q ss_pred ceeEEEeecccccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCCCh-hhhhccccceeec
Q 039180 453 KYLAISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLPS-SIYLLVNLQTLCL 531 (790)
Q Consensus 453 ~l~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp~-~~~~l~~L~~L~L 531 (790)
....++.+++.+..+|..+. ++++.|.+.+ |.+. .+++..|.++++|++|+|++|.+..+|. .+..+++|++|+|
T Consensus 20 s~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~-n~i~--~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP-TNAQILYLHD-NQIT--KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC-TTCSEEECCS-SCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred eCCEeEccCCCcCccCCCCC-CCCCEEEcCC-CccC--ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 34457777778888886543 4555554443 4444 4555556777888888888888777753 4577788888888
Q ss_pred cCccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceecCCccccccccCchhhccccccceEecccCCcc
Q 039180 532 DQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIE 609 (790)
Q Consensus 532 ~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 609 (790)
++|.++.+.+..+..+++|++|+|++|.++.+|..+..+++|++|++++| .+..+++..+..+++|+.|++++|.+.
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 88887777555567788888888888888888877778888888888877 667777666777788888888777653
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.56 E-value=6.7e-15 Score=142.57 Aligned_cols=153 Identities=18% Similarity=0.187 Sum_probs=118.1
Q ss_pred hhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceecCCccccccccCchhhcccccc
Q 039180 519 SIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRL 598 (790)
Q Consensus 519 ~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L 598 (790)
....+++|++|++++|.++.+ | .+..+++|++|++++|.++.++ .+..+++|++|++++| .++...+..++.+++|
T Consensus 39 ~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINVTDL-T-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGK-DVTSDKIPNLSGLTSL 114 (197)
T ss_dssp BHHHHHTCCEEEEESSCCSCC-T-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECT-TCBGGGSCCCTTCTTC
T ss_pred ChhhcCCccEEeccCCCccCh-H-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECC-ccCcccChhhcCCCCC
Confidence 347889999999999999876 5 6899999999999999887765 6888999999999998 5555333448899999
Q ss_pred ceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecC-CCCCCccccccccceeEEEecCCCCCCCccccCCc
Q 039180 599 EELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKN-DSILPESFLTQKLERFKISIGNESFMPSQSVELPN 677 (790)
Q Consensus 599 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 677 (790)
++|++++|.+. ...+..++.+++|+.|++++|. ...++. +..+++
T Consensus 115 ~~L~Ls~n~i~-----------~~~~~~l~~l~~L~~L~L~~n~~i~~~~~-----------------------l~~l~~ 160 (197)
T 4ezg_A 115 TLLDISHSAHD-----------DSILTKINTLPKVNSIDLSYNGAITDIMP-----------------------LKTLPE 160 (197)
T ss_dssp CEEECCSSBCB-----------GGGHHHHTTCSSCCEEECCSCTBCCCCGG-----------------------GGGCSS
T ss_pred CEEEecCCccC-----------cHhHHHHhhCCCCCEEEccCCCCccccHh-----------------------hcCCCC
Confidence 99999999874 2235667888999999998887 665543 245677
Q ss_pred cCeeeccceecceecccCCCccccccCCCccEEeeccCC
Q 039180 678 LEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCP 716 (790)
Q Consensus 678 L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~ 716 (790)
|+.|++++|.++++ + .+..+++|+.|++++|+
T Consensus 161 L~~L~l~~n~i~~~------~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 161 LKSLNIQFDGVHDY------R-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CCEEECTTBCCCCC------T-TGGGCSSCCEEEECBC-
T ss_pred CCEEECCCCCCcCh------H-HhccCCCCCEEEeeCcc
Confidence 77777777776653 2 36677788888887774
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.56 E-value=8.7e-15 Score=143.22 Aligned_cols=107 Identities=24% Similarity=0.365 Sum_probs=67.7
Q ss_pred CceEEEEecCccccCCCh-hhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchh-hhcccccceecC
Q 039180 501 KKLRVVALVKMLLSSLPS-SIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKA-LGELTKLRLSDL 578 (790)
Q Consensus 501 ~~L~~L~L~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l 578 (790)
++|++|++++|.++.+|. .+..+++|++|++++|.++.+.+..+..+++|++|++++|.++.+|.. +..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 466667777776665543 355666677777777666666444456666677777766666655543 456666666666
Q ss_pred CccccccccCchhhccccccceEecccCCc
Q 039180 579 TDCFHLKVIAPNVISSLTRLEELYMGNCPI 608 (790)
Q Consensus 579 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 608 (790)
++| .++.+++..+.++++|++|++++|.+
T Consensus 108 ~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l 136 (208)
T 2o6s_A 108 NTN-QLQSLPDGVFDKLTQLKDLRLYQNQL 136 (208)
T ss_dssp CSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCC-cCcccCHhHhccCCcCCEEECCCCcc
Confidence 665 55556555556666666666666654
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.56 E-value=1.1e-14 Score=143.50 Aligned_cols=149 Identities=21% Similarity=0.348 Sum_probs=92.2
Q ss_pred eEEEeecccccCCCCccCccccceeecccCCCCCCCCC-ChhhhccCCceEEEEecCccccCCC-hhhhhccccceeecc
Q 039180 455 LAISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNI-PENFFKGVKKLRVVALVKMLLSSLP-SSIYLLVNLQTLCLD 532 (790)
Q Consensus 455 ~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~l-p~~~~~~l~~L~~L~L~~~~~~~lp-~~~~~l~~L~~L~L~ 532 (790)
+.++++++.+..+|..+ +...+.+.+++|.+. .+ |...|..+++|++|+|++|.++.++ ..|..+++|++|+|+
T Consensus 14 ~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~--~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFT--VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCC--EECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcccCccCC--CCCCCEEEcCCCcCC--ccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 46777778777777643 222233344444444 33 3344566677777777777666553 356666777777777
Q ss_pred CccccccchhhhhccCcccEEeccCCCCccc-chhhhcccccceecCCccccccccCchhhccccccceEecccCCc
Q 039180 533 QSILRDIDIAIIGKLKNLKILSFVRSDIVQL-PKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPI 608 (790)
Q Consensus 533 ~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 608 (790)
+|.++.+.+..++.+++|++|+|++|.++.+ |..+..+++|++|++++| .++.+++..+..+++|+.|++++|.+
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCC
Confidence 7776666555566677777777777766654 445666666777777666 55555555566666666666666655
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.55 E-value=2.3e-16 Score=177.67 Aligned_cols=204 Identities=15% Similarity=0.087 Sum_probs=116.9
Q ss_pred ccCCceEEEEecCccccCCChhhhhccccceeeccCcc-------------ccccchhhhhccCcccEEe-ccCCCCccc
Q 039180 498 KGVKKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSI-------------LRDIDIAIIGKLKNLKILS-FVRSDIVQL 563 (790)
Q Consensus 498 ~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~-------------l~~l~p~~i~~l~~L~~L~-L~~~~l~~l 563 (790)
..+++|+.|+|++|.++.+|..+++|++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+..+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 45677777888888887788888888888888876664 2233345555555555555 343332222
Q ss_pred chhhhcccccceecCCccccccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCC
Q 039180 564 PKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKND 643 (790)
Q Consensus 564 p~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 643 (790)
+. +.+++| .++.+++ ..|+.|++++|.+.. .+. ++.+++|+.|++++|.+
T Consensus 426 ~~----------l~l~~n-~i~~l~~------~~L~~L~Ls~n~l~~------------lp~-~~~l~~L~~L~Ls~N~l 475 (567)
T 1dce_A 426 RS----------KFLLEN-SVLKMEY------ADVRVLHLAHKDLTV------------LCH-LEQLLLVTHLDLSHNRL 475 (567)
T ss_dssp HH----------HHHHHH-HHHHHHH------TTCSEEECTTSCCSS------------CCC-GGGGTTCCEEECCSSCC
T ss_pred hh----------hhhhcc-cccccCc------cCceEEEecCCCCCC------------CcC-ccccccCcEeecCcccc
Confidence 11 111111 1111111 134555555554420 121 44455555555555555
Q ss_pred CCCCcccc-ccccceeEEEecCCCCCCCccccCCccCeeeccceecceecccCCC-ccccccCCCccEEeeccCCccccc
Q 039180 644 SILPESFL-TQKLERFKISIGNESFMPSQSVELPNLEALELCAINVDKIWHYNLL-PFMLSRFQSLTRLIVRSCPKLKYI 721 (790)
Q Consensus 644 ~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~-~~~~~~l~~L~~L~L~~~~~l~~~ 721 (790)
..+|..+. +++|+.|+|++|.+...| .+..+++|+.|+|++|.++.+ + |..++.+++|+.|+|++|+ ++..
T Consensus 476 ~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~-----~~p~~l~~l~~L~~L~L~~N~-l~~~ 548 (567)
T 1dce_A 476 RALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQS-----AAIQPLVSCPRLVLLNLQGNS-LCQE 548 (567)
T ss_dssp CCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSS-----STTGGGGGCTTCCEEECTTSG-GGGS
T ss_pred cccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCC-----CCcHHHhcCCCCCEEEecCCc-CCCC
Confidence 55544332 455555555555555544 456788888888888887743 3 6668888889999998884 5554
Q ss_pred chh--HHHhccccccEEee
Q 039180 722 FSA--SMIQNFELLRELSI 738 (790)
Q Consensus 722 ~~~--~~~~~l~~L~~L~l 738 (790)
++. .....+|+|+.|++
T Consensus 549 ~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 549 EGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCTTHHHHHCTTCSEEEC
T ss_pred ccHHHHHHHHCcccCccCC
Confidence 321 23456888888863
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.54 E-value=8.3e-15 Score=156.48 Aligned_cols=171 Identities=20% Similarity=0.256 Sum_probs=107.5
Q ss_pred ecccCCCCCCCCCChhhhccCCceEEEEecCccccCCChh-hh-hccccceeeccCccccccchhhhhccCcccEEeccC
Q 039180 480 LMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLPSS-IY-LLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVR 557 (790)
Q Consensus 480 ~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp~~-~~-~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~ 557 (790)
+..+++.+. .+|..+. +.++.|+|++|.++.++.. +. .+++|++|+|++|.++.+.+..+..+++|++|+|++
T Consensus 23 l~c~~~~l~--~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 23 LSCSKQQLP--NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp EECCSSCCS--SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEeCCCCcC--ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 334444454 5666442 4577788888877766443 44 777788888888887777566677778888888888
Q ss_pred CCCcccch-hhhcccccceecCCccccccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEE
Q 039180 558 SDIVQLPK-ALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTL 636 (790)
Q Consensus 558 ~~l~~lp~-~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 636 (790)
|.++.+|. .+..+++|++|++++| .+..+++..+.++++|++|++++|.+.... ...+..+..+++|+.|
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~--------~~~~~~~~~l~~L~~L 168 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISRFP--------VELIKDGNKLPKLMLL 168 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCSCC--------GGGTC----CTTCCEE
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCCcCCeeC--------HHHhcCcccCCcCCEE
Confidence 87776654 4677777888888776 566666666777778888888777764211 0111122556777777
Q ss_pred EEEecCCCCCCcccc--ccc--cceeEEEecC
Q 039180 637 EIDVKNDSILPESFL--TQK--LERFKISIGN 664 (790)
Q Consensus 637 ~l~~~~~~~~~~~~~--~~~--L~~L~l~~~~ 664 (790)
++++|.+..++.... ++. |+.|++++|.
T Consensus 169 ~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 169 DLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp ECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred ECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 777777666664321 222 3455555554
No 115
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.54 E-value=1.1e-14 Score=142.64 Aligned_cols=166 Identities=24% Similarity=0.368 Sum_probs=131.1
Q ss_pred eEEEeecccccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCCCh-hhhhccccceeeccC
Q 039180 455 LAISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLPS-SIYLLVNLQTLCLDQ 533 (790)
Q Consensus 455 ~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp~-~~~~l~~L~~L~L~~ 533 (790)
+.+...++.+..+|..+ .++++.|.+.+ +.+. .++...|..+++|++|++++|.++.+|. .+..+++|++|++++
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~-n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLET-NSLK--SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCS-SCCC--CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCC-CccC--cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 35666677777777654 34555555544 4444 5777778899999999999999998865 468899999999999
Q ss_pred ccccccchhhhhccCcccEEeccCCCCcccchh-hhcccccceecCCccccccccCchhhccccccceEecccCCccchh
Q 039180 534 SILRDIDIAIIGKLKNLKILSFVRSDIVQLPKA-LGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEV 612 (790)
Q Consensus 534 ~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 612 (790)
|.++.+.+..++.+++|++|++++|.++.+|.. +..+++|++|++++| .++.+++..+.++++|+.|++++|.+.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~--- 161 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWD--- 161 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBC---
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCee---
Confidence 999988666689999999999999999988765 688999999999998 678888877889999999999998652
Q ss_pred hcccccccccccccccCCCCCcEEEEEecCC
Q 039180 613 ERANSERSNSSLDELMNLPWLTTLEIDVKND 643 (790)
Q Consensus 613 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 643 (790)
+.+++|+.|++..|..
T Consensus 162 ---------------~~~~~l~~L~~~~n~~ 177 (208)
T 2o6s_A 162 ---------------CTCPGIRYLSEWINKH 177 (208)
T ss_dssp ---------------CCTTTTHHHHHHHHHC
T ss_pred ---------------cCCCCHHHHHHHHHhC
Confidence 2455677766665553
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.54 E-value=2e-14 Score=141.68 Aligned_cols=106 Identities=17% Similarity=0.278 Sum_probs=55.4
Q ss_pred ceEEEEecCccccCCCh-hhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchh-hhcccccceecCC
Q 039180 502 KLRVVALVKMLLSSLPS-SIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKA-LGELTKLRLSDLT 579 (790)
Q Consensus 502 ~L~~L~L~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l~ 579 (790)
.|+.|++++|.++.+|. .|..+++|++|+|++|.++.+.|..|..+++|++|+|++|.++.+|.. +..+++|++|+++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 45555555555554432 445555555555555555555455555555555555555555555443 3445555555555
Q ss_pred ccccccccCchhhccccccceEecccCCc
Q 039180 580 DCFHLKVIAPNVISSLTRLEELYMGNCPI 608 (790)
Q Consensus 580 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 608 (790)
+| .++.+++..+..+++|++|++++|.+
T Consensus 113 ~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 140 (220)
T 2v9t_B 113 AN-KINCLRVDAFQDLHNLNLLSLYDNKL 140 (220)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CC-CCCEeCHHHcCCCCCCCEEECCCCcC
Confidence 54 44444444455555555555555544
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.54 E-value=1.8e-14 Score=146.28 Aligned_cols=166 Identities=16% Similarity=0.191 Sum_probs=81.9
Q ss_pred ceeEEEeecccccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCCChhhhhccccceeecc
Q 039180 453 KYLAISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLPSSIYLLVNLQTLCLD 532 (790)
Q Consensus 453 ~l~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~ 532 (790)
.+..+.+.++.+..++....+++++.|.+.++ .+. .+|. +..+++|++|++++|.++.+|. +..+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n-~i~--~l~~--l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNS-NIQ--SLAG--MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCSEEECTTS-CCC--CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCcccccchhhcCcCcEEECcCC-Ccc--cchH--HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence 33444444455544443334444444444333 222 3441 3455555555555555555544 5555555555555
Q ss_pred CccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceecCCccccccccCchhhccccccceEecccCCccchh
Q 039180 533 QSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEV 612 (790)
Q Consensus 533 ~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 612 (790)
+|.++.+ |.. .. ++|++|++++|.++.+| .+..+++|++|++++| .++.++ .++.+++|++|++++|.+..
T Consensus 94 ~N~l~~l-~~~-~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~--~l~~l~~L~~L~L~~N~i~~-- 164 (263)
T 1xeu_A 94 RNRLKNL-NGI-PS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIV--MLGFLSKLEVLDLHGNEITN-- 164 (263)
T ss_dssp SSCCSCC-TTC-CC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCG--GGGGCTTCCEEECTTSCCCB--
T ss_pred CCccCCc-Ccc-cc-CcccEEEccCCccCCCh-hhcCcccccEEECCCC-cCCCCh--HHccCCCCCEEECCCCcCcc--
Confidence 5555554 221 22 55555555555555543 2555555555555555 444443 24555555555555555421
Q ss_pred hcccccccccccccccCCCCCcEEEEEecCCC
Q 039180 613 ERANSERSNSSLDELMNLPWLTTLEIDVKNDS 644 (790)
Q Consensus 613 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 644 (790)
...+..+++|+.|++++|...
T Consensus 165 -----------~~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 165 -----------TGGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp -----------CTTSTTCCCCCEEEEEEEEEE
T ss_pred -----------hHHhccCCCCCEEeCCCCccc
Confidence 133445555555555555543
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.52 E-value=2.2e-14 Score=141.36 Aligned_cols=151 Identities=17% Similarity=0.228 Sum_probs=124.8
Q ss_pred EEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCccc-chhhhcccccceecCCccc
Q 039180 504 RVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQL-PKALGELTKLRLSDLTDCF 582 (790)
Q Consensus 504 ~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~l~~~~ 582 (790)
+.++++++.++.+|..+. .+|+.|++++|.++.+.+..+..+++|++|+|++|.++.+ |..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N- 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN- 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-
Confidence 578899999999988765 6899999999999998677899999999999999999966 778999999999999998
Q ss_pred cccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCccccccccceeEEEe
Q 039180 583 HLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFLTQKLERFKISI 662 (790)
Q Consensus 583 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~ 662 (790)
.++.+|+..+.++++|++|++++|.+. ...+..+..+++|+.|++++|.+..++..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------------- 146 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKIN-----------CLRVDAFQDLHNLNLLSLYDNKLQTIAKG------------- 146 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-----------CCCTTTTTTCTTCCEEECCSSCCSCCCTT-------------
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCC-----------EeCHHHcCCCCCCCEEECCCCcCCEECHH-------------
Confidence 788899887899999999999999874 22345677888899999888887666543
Q ss_pred cCCCCCCCccccCCccCeeeccceecc
Q 039180 663 GNESFMPSQSVELPNLEALELCAINVD 689 (790)
Q Consensus 663 ~~~~~~~~~~~~l~~L~~L~l~~~~l~ 689 (790)
.+..+++|+.|++++|.+.
T Consensus 147 --------~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 147 --------TFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp --------TTTTCTTCCEEECCSSCEE
T ss_pred --------HHhCCCCCCEEEeCCCCcC
Confidence 1344666777777777554
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.51 E-value=5.2e-14 Score=139.71 Aligned_cols=128 Identities=27% Similarity=0.355 Sum_probs=67.3
Q ss_pred EEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchh-hhcccccceecCCcccc
Q 039180 505 VVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKA-LGELTKLRLSDLTDCFH 583 (790)
Q Consensus 505 ~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l~~~~~ 583 (790)
.++++++.+..+|..+. ++|++|+|++|.++++.|..+..+++|++|+|++|.++.+|.. +..+++|++|++++| .
T Consensus 23 ~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~ 99 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-Q 99 (229)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred EeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-c
Confidence 45555555555554432 5555555555555555455555555555555555555555433 355555555555555 4
Q ss_pred ccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCC
Q 039180 584 LKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILP 647 (790)
Q Consensus 584 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 647 (790)
++.+++..+..+++|++|++++|.+. ..+..+..+++|+.|++++|.+..++
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~------------~lp~~~~~l~~L~~L~L~~N~l~~~~ 151 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLT------------ELPRGIERLTHLTHLALDQNQLKSIP 151 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC------------SCCTTGGGCTTCSEEECCSSCCCCCC
T ss_pred CCccChhHhCcchhhCeEeccCCccc------------ccCcccccCCCCCEEECCCCcCCccC
Confidence 55555544555555555555555542 12333444555555555555444333
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.50 E-value=2.8e-14 Score=152.37 Aligned_cols=173 Identities=18% Similarity=0.272 Sum_probs=129.7
Q ss_pred eEEEeecccccCCCCccCccccceeecccCCCCCCCCCChhhhc-cCCceEEEEecCccccCCC-hhhhhccccceeecc
Q 039180 455 LAISLINSRINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFK-GVKKLRVVALVKMLLSSLP-SSIYLLVNLQTLCLD 532 (790)
Q Consensus 455 ~~l~l~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~-~l~~L~~L~L~~~~~~~lp-~~~~~l~~L~~L~L~ 532 (790)
+.+.++++.+..+|..+ +...+.+.+++|.+. .++...|. ++++|++|+|++|.++.++ ..|..+++|++|+|+
T Consensus 21 ~~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~--~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL--PSYTALLDLSHNNLS--RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSSCCSSC--CTTCSEEECCSSCCC--EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCccCccC--CCCCCEEECCCCCCC--ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 56788888888888654 233444556666666 57777676 8889999999999888774 568888999999999
Q ss_pred CccccccchhhhhccCcccEEeccCCCCccc-chhhhcccccceecCCccccccccCchhh---ccccccceEecccCCc
Q 039180 533 QSILRDIDIAIIGKLKNLKILSFVRSDIVQL-PKALGELTKLRLSDLTDCFHLKVIAPNVI---SSLTRLEELYMGNCPI 608 (790)
Q Consensus 533 ~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~l~~~~~l~~~~~~~l---~~l~~L~~L~l~~~~~ 608 (790)
+|.++.+.+..+..+++|++|+|++|.++.+ |..+..+++|++|++++| .++.+|...+ ..+++|+.|++++|.+
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 9998888666788899999999999988866 566888899999999987 7788887755 5688999999998877
Q ss_pred cchhhcccccccccccccccCCCC--CcEEEEEecCC
Q 039180 609 EWEVERANSERSNSSLDELMNLPW--LTTLEIDVKND 643 (790)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~ 643 (790)
... ....+..++. |+.|++.+|..
T Consensus 176 ~~l-----------~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 176 KKL-----------PLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCC-----------CHHHHHHSCHHHHTTEECCSSCE
T ss_pred Ccc-----------CHHHhhhccHhhcceEEecCCCc
Confidence 421 1234555555 46788887763
No 121
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.49 E-value=9.3e-14 Score=136.89 Aligned_cols=147 Identities=14% Similarity=0.160 Sum_probs=113.6
Q ss_pred ecccCCCCCCCCCChhhhccCCceEEEEecCccccCCC--hhhhhccccceeeccCccccccchhhhhccCcccEEeccC
Q 039180 480 LMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLP--SSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVR 557 (790)
Q Consensus 480 ~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp--~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~ 557 (790)
+..+++.+. .+|..+ .+.+++|+|++|.++.++ ..|..+++|++|+|++|.++.+.+..++.+++|++|+|++
T Consensus 16 l~~s~n~l~--~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 16 VDCSNQKLN--KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EECCSSCCS--SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEeCCCCcc--cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 444555555 577654 345678899999888763 3478889999999999998888666888899999999999
Q ss_pred CCCcccchh-hhcccccceecCCccccccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEE
Q 039180 558 SDIVQLPKA-LGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTL 636 (790)
Q Consensus 558 ~~l~~lp~~-l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 636 (790)
|.++.+|.. +..+++|++|++++| .+..+++..+.++++|++|++++|.+. ...+..+..+++|+.|
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~L 158 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQIT-----------TVAPGAFDTLHSLSTL 158 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCC-----------CBCTTTTTTCTTCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCC-----------EECHHHhcCCCCCCEE
Confidence 988877654 788889999999987 677776666888899999999888774 2234567778888888
Q ss_pred EEEecCC
Q 039180 637 EIDVKND 643 (790)
Q Consensus 637 ~l~~~~~ 643 (790)
++++|..
T Consensus 159 ~L~~N~l 165 (220)
T 2v70_A 159 NLLANPF 165 (220)
T ss_dssp ECCSCCE
T ss_pred EecCcCC
Confidence 8888764
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.47 E-value=1.1e-14 Score=169.27 Aligned_cols=157 Identities=18% Similarity=0.249 Sum_probs=105.0
Q ss_pred ccceeEEEeecccccCCCCcc-Cccccceeeccc----CCCCCCCCCChhhhccCCceEEEEecCccccCCChhhhhccc
Q 039180 451 LKKYLAISLINSRINDIPEGL-ESAQLEFLLMIP----NNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLPSSIYLLVN 525 (790)
Q Consensus 451 ~~~l~~l~l~~~~~~~l~~~~-~~~~l~~l~~~~----~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~ 525 (790)
..+++++++..+.+...+... ....+..+.+.+ ++.+ .++...|..++.|+.|+|++|.+..+|..++.+++
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~---~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~ 248 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRM---VMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDF 248 (727)
T ss_dssp -----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCS
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccce---ecChhhhccCCCCcEEECCCCCCCCCChhhcCCCC
Confidence 356888888888887766543 333443333221 2222 25666778999999999999999999999999999
Q ss_pred cceeeccCccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceecCCccccccccCchhhccccccceEeccc
Q 039180 526 LQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGN 605 (790)
Q Consensus 526 L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 605 (790)
|++|+|++|.++.+ |..|++|++|++|+|++|.|+.+|..++.|++|++|+|++| .++.+|.. ++++++|++|+|++
T Consensus 249 L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 249 LTRLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDN-MVTTLPWE-FGNLCNLQFLGVEG 325 (727)
T ss_dssp CSCCBCTTSCCSCC-CGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSS-CCCCCCSS-TTSCTTCCCEECTT
T ss_pred CCEEEeeCCcCccc-ChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCC-CCCccChh-hhcCCCccEEeCCC
Confidence 99999999999976 89999999999999999999999999999999999999998 78889877 89999999999999
Q ss_pred CCccchhh
Q 039180 606 CPIEWEVE 613 (790)
Q Consensus 606 ~~~~~~~~ 613 (790)
|.+...++
T Consensus 326 N~l~~~~p 333 (727)
T 4b8c_D 326 NPLEKQFL 333 (727)
T ss_dssp SCCCSHHH
T ss_pred CccCCCCh
Confidence 99875443
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.47 E-value=8.4e-14 Score=131.04 Aligned_cols=140 Identities=24% Similarity=0.224 Sum_probs=104.1
Q ss_pred cCCceEEEEecCcccc--CCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcc-cchhhhcccccce
Q 039180 499 GVKKLRVVALVKMLLS--SLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQ-LPKALGELTKLRL 575 (790)
Q Consensus 499 ~l~~L~~L~L~~~~~~--~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~ 575 (790)
..++|+.|++++|.+. .+|..+..+++|++|++++|.++.. ..++.+++|++|++++|.++. +|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3467888888888887 7787788888888888888888775 667788888888888888876 7776777888888
Q ss_pred ecCCccccccccCc-hhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCcc
Q 039180 576 SDLTDCFHLKVIAP-NVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPES 649 (790)
Q Consensus 576 L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 649 (790)
|++++| .++.++. ..+..+++|++|++++|.+..... .....+..+++|+.|+++.|....+|..
T Consensus 100 L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~--------~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 100 LNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLND--------YRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp EECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT--------HHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred EeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHH--------HHHHHHHhCccCcEecCCCCChhhcccc
Confidence 888887 6666652 447788888888888887641110 0013567788888888888876666543
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.46 E-value=6.3e-15 Score=165.95 Aligned_cols=220 Identities=12% Similarity=0.084 Sum_probs=146.3
Q ss_pred hhccccceeeccCccccccchhhhhccCcccEEeccCCC-CcccchhhhcccccceecCCccccccccCchhhccccccc
Q 039180 521 YLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSD-IVQLPKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLE 599 (790)
Q Consensus 521 ~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~-l~~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~ 599 (790)
..+++|+.|+|++|.++.+ |..+++|++|+.|++++|. +..+|..+ +.++ ....++..++++++|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~L-p~~i~~l~~L~~L~l~~n~~l~~l~~ll------~~~~------~~~~~~~~l~~l~~L~ 412 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVL-QSELESCKELQELEPENKWCLLTIILLM------RALD------PLLYEKETLQYFSTLK 412 (567)
T ss_dssp STTTTSSSCCCCHHHHHHH-HHHHHHHHHHHHHCTTCHHHHHHHHHHH------HHHC------TGGGHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHHhh-HHHHHHHHHHHHhccccchhhhhHHHHH------Hhcc------cccCCHHHHHHHHhcc
Confidence 4577888888888888777 8888888888888886652 11222110 0111 1112233355555666
Q ss_pred eEe-cccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCccccccccceeEEEecCCCCCCCccccCCcc
Q 039180 600 ELY-MGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESFLTQKLERFKISIGNESFMPSQSVELPNL 678 (790)
Q Consensus 600 ~L~-l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L 678 (790)
.|+ ++.+.+. .+... ......+..+. ...|+.|++++|.+..+|....+++|+.|++++|.+...|..+..+++|
T Consensus 413 ~L~~l~~n~~~-~L~~l--~l~~n~i~~l~-~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L 488 (567)
T 1dce_A 413 AVDPMRAAYLD-DLRSK--FLLENSVLKME-YADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCL 488 (567)
T ss_dssp HHCGGGHHHHH-HHHHH--HHHHHHHHHHH-HTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTC
T ss_pred cCcchhhcccc-hhhhh--hhhcccccccC-ccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCC
Confidence 555 3333211 00000 00000011111 1258999999999999988556899999999999999888888999999
Q ss_pred CeeeccceecceecccCCCccccccCCCccEEeeccCCcccccchhHHHhccccccEEeeccCchhhhHhhcCCCCCCCC
Q 039180 679 EALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFELLRELSIADCRGLREIISKDRADHVTP 758 (790)
Q Consensus 679 ~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 758 (790)
+.|+|++|.++.+ | .++.+++|+.|+|++| .++.++.+..+..+++|+.|++++++ +...+..... -
T Consensus 489 ~~L~Ls~N~l~~l------p-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~----l 555 (567)
T 1dce_A 489 EVLQASDNALENV------D-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQER----L 555 (567)
T ss_dssp CEEECCSSCCCCC------G-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTH----H
T ss_pred CEEECCCCCCCCC------c-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHH----H
Confidence 9999999999864 5 6899999999999999 57776423568899999999999985 5555432211 1
Q ss_pred cccCCccceeec
Q 039180 759 CFVFPQMTTLRL 770 (790)
Q Consensus 759 ~~~~p~L~~L~l 770 (790)
...+|+|+.|++
T Consensus 556 ~~~lp~L~~L~l 567 (567)
T 1dce_A 556 AEMLPSVSSILT 567 (567)
T ss_dssp HHHCTTCSEEEC
T ss_pred HHHCcccCccCC
Confidence 124899999864
No 125
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.42 E-value=2e-11 Score=129.80 Aligned_cols=266 Identities=10% Similarity=0.103 Sum_probs=158.8
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCC------CHHHHHHHHHHHhCC-----------------
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSP------DIKQIQQEIAEKLGL----------------- 185 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~------~~~~~~~~i~~~l~~----------------- 185 (790)
+++.|+|++|+|||||++++++.. . ++|+++.... +...+.+.+.+.+..
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 104 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFL 104 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGG
T ss_pred CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecce
Confidence 589999999999999999998764 1 6788775432 566667777665532
Q ss_pred CCc--hhHHHHHHHHHHHHHHcCCcEEEEEeCCCCccC---------ccccCccCCCCCCCcEEEEEeCChhHHhhh---
Q 039180 186 ELS--EEAEFRRASRMFERLKNEKKILLILDNTWKSLD---------LGTIGIPFGVEHRGCKLLFTTRDLDVLIRM--- 251 (790)
Q Consensus 186 ~~~--~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~---------~~~l~~~~~~~~~gs~iliTtR~~~v~~~~--- 251 (790)
... ...-.+....+.+.....++++||+||++.... +..+.... ....+.++|+|++.......+
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~-~~~~~~~~il~g~~~~~l~~~l~~ 183 (350)
T 2qen_A 105 TLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY-DSLPNLKIILTGSEVGLLHDFLKI 183 (350)
T ss_dssp TSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH-HHCTTEEEEEEESSHHHHHHHHCT
T ss_pred eeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH-HhcCCeEEEEECCcHHHHHHHHhh
Confidence 000 011112222333333222389999999976543 11121111 112477899999886532211
Q ss_pred --------CC-CceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHHHHHHHHHHhc-CChhHHHHHH
Q 039180 252 --------GS-EKNFSIGILNEQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIALTIVVKALRN-KELPEWKNAL 321 (790)
Q Consensus 252 --------~~-~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~-~~~~~w~~~l 321 (790)
+. ...+.+.+|+.+|+.+++.......... ...+.+..|.+.++|+|+++..++..+.. .+...+.
T Consensus 184 ~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~-~~~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~--- 259 (350)
T 2qen_A 184 TDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD-VPENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAM--- 259 (350)
T ss_dssp TCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHH---
T ss_pred cCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHH---
Confidence 11 2479999999999999998765322111 12456789999999999999999876432 2222211
Q ss_pred HHhcCCCCCCcCCCCchhhhhhHHHHHHHH---hHHhHHHHhhhcccCCCCHHHHHHHHhh-cCccchHHHHHHHHHHHH
Q 039180 322 QELQMPSETSFDEGVPAEAYSTIELSYKYL---GKQLKETILLCSLIAPTSIMDLINYTMG-FGVLKLEEAHNKLHAWVR 397 (790)
Q Consensus 322 ~~l~~~~~~~~~~~~~~~~~~~l~~sy~~L---~~~~k~~f~~~s~fp~~~~~~Li~~w~~-eg~~~~~~~~~~~~~~~~ 397 (790)
..+ ...+...+.-.+..+ ++..+..+..+|. ...+...+...... .|-++ ...+.++++
T Consensus 260 ~~~------------~~~~~~~~~~~l~~l~~~~~~~~~~l~~la~-g~~~~~~l~~~~~~~~~~~~----~~~~~~~l~ 322 (350)
T 2qen_A 260 KRT------------LEVAKGLIMGELEELRRRSPRYVDILRAIAL-GYNRWSLIRDYLAVKGTKIP----EPRLYALLE 322 (350)
T ss_dssp HHH------------HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT-TCCSHHHHHHHHHHTTCCCC----HHHHHHHHH
T ss_pred HHH------------HHHHHHHHHHHHHHHHhCChhHHHHHHHHHh-CCCCHHHHHHHHHHHhCCCC----HHHHHHHHH
Confidence 110 001122232333444 6888888888887 43455555544321 11111 233556889
Q ss_pred HHHhccceeeeCCcCeEEe-ChhhHHHHH
Q 039180 398 QLRDSCLLLVDGSSKFFSM-HDVLRDVAI 425 (790)
Q Consensus 398 ~L~~~sll~~~~~~~~~~~-h~li~~~~~ 425 (790)
.|.+.+++...+ ..|++ |++++++.+
T Consensus 323 ~L~~~gli~~~~--~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 323 NLKKMNWIVEED--NTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHTTSEEEET--TEEEESSHHHHHHHT
T ss_pred HHHhCCCEEecC--CEEEEecHHHHHHHc
Confidence 999999998763 45665 678887753
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.42 E-value=5e-13 Score=128.55 Aligned_cols=122 Identities=16% Similarity=0.276 Sum_probs=99.4
Q ss_pred ccCCCCCCCCCChhhhccCCceEEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCc
Q 039180 482 IPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIV 561 (790)
Q Consensus 482 ~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~ 561 (790)
.+++.+. .+|..++ +.|++|++++|.++.+|..+..+++|++|+|++|.++.+.+..|..+++|++|+|++|.++
T Consensus 17 ~~~~~l~--~ip~~~~---~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 17 CSNKGLK--VLPKGIP---RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp CTTSCCS--SCCSCCC---TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cCCCCCC--cCCCCCC---CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 3334444 4555432 5788899999999988888999999999999999998887778899999999999999988
Q ss_pred ccch-hhhcccccceecCCccccccccCchhhccccccceEecccCCcc
Q 039180 562 QLPK-ALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIE 609 (790)
Q Consensus 562 ~lp~-~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 609 (790)
.+|. .+..+++|++|++++| .++.+|+..+..+++|+.|++++|.+.
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCee
Confidence 7765 5788899999999997 778888877888999999999888763
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.40 E-value=5.6e-13 Score=125.34 Aligned_cols=111 Identities=22% Similarity=0.223 Sum_probs=92.1
Q ss_pred hccCCceEEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccc--hhhhcccccc
Q 039180 497 FKGVKKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLP--KALGELTKLR 574 (790)
Q Consensus 497 ~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp--~~l~~l~~L~ 574 (790)
+..+++|++|++++|.++.+ ..+..+++|++|++++|.++...|..++.+++|++|++++|.++.+| ..+..+++|+
T Consensus 45 ~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~ 123 (168)
T 2ell_A 45 TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLK 123 (168)
T ss_dssp CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCC
T ss_pred HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCC
Confidence 46778899999999988877 67888889999999999988854777788999999999999888776 6788889999
Q ss_pred eecCCccccccccCc---hhhccccccceEecccCCcc
Q 039180 575 LSDLTDCFHLKVIAP---NVISSLTRLEELYMGNCPIE 609 (790)
Q Consensus 575 ~L~l~~~~~l~~~~~---~~l~~l~~L~~L~l~~~~~~ 609 (790)
+|++++| .+..+|+ ..+..+++|++|++++|.+.
T Consensus 124 ~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 124 SLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 9999988 6777766 45788999999999888763
No 128
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.39 E-value=3.6e-13 Score=115.58 Aligned_cols=73 Identities=10% Similarity=0.059 Sum_probs=66.2
Q ss_pred CcccchhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039180 2 SEFSYWHNSGANFDNLKAELDRLKDERESIQRRVSEAERKS-EKIEEMVEKWLVNANKRIEQAAKFIQDEEAAN 74 (790)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~-~~~~~~~~~w~~~~~~~~~~~ed~~d~~~~~~ 74 (790)
|..+++.+++..+.++++++++|+++|++|+++|.+|+++. ...++.++.|+.+||++|||+||+||+|.+..
T Consensus 9 KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~ 82 (115)
T 3qfl_A 9 KLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQV 82 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56678899999999999999999999999999999999873 22489999999999999999999999998764
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.37 E-value=3e-13 Score=124.37 Aligned_cols=105 Identities=20% Similarity=0.207 Sum_probs=61.5
Q ss_pred CceEEEEecCcccc--CCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcc-cchhhhcccccceec
Q 039180 501 KKLRVVALVKMLLS--SLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQ-LPKALGELTKLRLSD 577 (790)
Q Consensus 501 ~~L~~L~L~~~~~~--~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~ 577 (790)
++|+.|++++|.+. .+|..+..+++|++|++++|.++.. ..++.+++|++|++++|.++. +|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45666666666665 5555556666666666666666553 445566666666666666654 555555566666666
Q ss_pred CCccccccccC-chhhccccccceEecccCCc
Q 039180 578 LTDCFHLKVIA-PNVISSLTRLEELYMGNCPI 608 (790)
Q Consensus 578 l~~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~ 608 (790)
+++| .++.++ +..++.+++|++|++++|.+
T Consensus 95 ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l 125 (149)
T 2je0_A 95 LSGN-KIKDLSTIEPLKKLENLKSLDLFNCEV 125 (149)
T ss_dssp CTTS-CCCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred CCCC-cCCChHHHHHHhhCCCCCEEeCcCCcc
Confidence 6665 344433 13355666666666666654
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.37 E-value=8.8e-13 Score=125.00 Aligned_cols=133 Identities=17% Similarity=0.208 Sum_probs=85.1
Q ss_pred ccCCceEEEEecCccccCCChhhhhcc-ccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhh-hcccccce
Q 039180 498 KGVKKLRVVALVKMLLSSLPSSIYLLV-NLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKAL-GELTKLRL 575 (790)
Q Consensus 498 ~~l~~L~~L~L~~~~~~~lp~~~~~l~-~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l-~~l~~L~~ 575 (790)
..+.+|+.|++++|.++.+|. +..+. +|++|++++|.++++ ..++.+++|++|++++|.++.+|..+ ..+++|++
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 456677777777777776654 44444 777777777777764 45677777777777777777666554 67777777
Q ss_pred ecCCccccccccCc-hhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecC
Q 039180 576 SDLTDCFHLKVIAP-NVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKN 642 (790)
Q Consensus 576 L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 642 (790)
|++++| .++.+|. ..++.+++|+.|++++|.+.... ......+..+++|+.|+++.|.
T Consensus 93 L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~--------~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 93 LILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKK--------HYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGST--------THHHHHHHHCTTCSEETTEECC
T ss_pred EECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCcH--------hHHHHHHHHCCccceeCCCcCC
Confidence 777776 5566654 23667777777777777653110 0001125566677777766654
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.36 E-value=1.1e-12 Score=126.14 Aligned_cols=107 Identities=19% Similarity=0.257 Sum_probs=74.6
Q ss_pred ceEEEEecCccccCCChh--hhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchh-hhcccccceecC
Q 039180 502 KLRVVALVKMLLSSLPSS--IYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKA-LGELTKLRLSDL 578 (790)
Q Consensus 502 ~L~~L~L~~~~~~~lp~~--~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l 578 (790)
.|++|++++|.++.++.. +..+++|++|+|++|.++++.|..++.+++|++|+|++|.++.++.. +..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 567777777777766542 67777777777777777776666777777777777777777755543 667777777777
Q ss_pred CccccccccCchhhccccccceEecccCCcc
Q 039180 579 TDCFHLKVIAPNVISSLTRLEELYMGNCPIE 609 (790)
Q Consensus 579 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 609 (790)
++| .++.+++..++.+++|++|++++|.+.
T Consensus 110 ~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 110 YDN-QISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSS-CCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCC-cCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 776 555555555677777777777777653
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.36 E-value=1.3e-12 Score=120.10 Aligned_cols=106 Identities=23% Similarity=0.267 Sum_probs=90.1
Q ss_pred hccCCceEEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccc--hhhhcccccc
Q 039180 497 FKGVKKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLP--KALGELTKLR 574 (790)
Q Consensus 497 ~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp--~~l~~l~~L~ 574 (790)
+..+++|++|++++|.++.+ ..++.+++|++|++++|.+++..|..++.+++|++|++++|.++.+| ..+..+++|+
T Consensus 38 ~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~ 116 (149)
T 2je0_A 38 TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLK 116 (149)
T ss_dssp CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCC
T ss_pred HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCC
Confidence 46788999999999988877 77888999999999999988854888888999999999999988765 7788999999
Q ss_pred eecCCccccccccCc---hhhccccccceEecc
Q 039180 575 LSDLTDCFHLKVIAP---NVISSLTRLEELYMG 604 (790)
Q Consensus 575 ~L~l~~~~~l~~~~~---~~l~~l~~L~~L~l~ 604 (790)
+|++++| .++.+++ ..++.+++|+.|+++
T Consensus 117 ~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 117 SLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 9999998 6777776 567889999998875
No 133
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.36 E-value=3.4e-11 Score=128.34 Aligned_cols=263 Identities=13% Similarity=0.145 Sum_probs=155.5
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCC-----CCHHHHHHHHHHHhCC-------------C----
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQS-----PDIKQIQQEIAEKLGL-------------E---- 186 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~i~~~l~~-------------~---- 186 (790)
+++.|+|++|+|||||++++++.... . .+|+++... .+.......+.+.+.. .
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~ 105 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNL----P-YIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGI 105 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTC----C-EEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCC----C-EEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceE
Confidence 68999999999999999999987632 2 578887643 3445555555443310 0
Q ss_pred ---C---chhH---HHHHHHHHHHHHHc-C-CcEEEEEeCCCCcc-----CccccCccCCCCCCCcEEEEEeCChhHHhh
Q 039180 187 ---L---SEEA---EFRRASRMFERLKN-E-KKILLILDNTWKSL-----DLGTIGIPFGVEHRGCKLLFTTRDLDVLIR 250 (790)
Q Consensus 187 ---~---~~~~---~~~~~~~l~~~l~~-~-kr~LlVlDdv~~~~-----~~~~l~~~~~~~~~gs~iliTtR~~~v~~~ 250 (790)
. .... .......+.+.+.. . ++++||+||++... ++..+...+.....+.++|+|++.......
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~ 185 (357)
T 2fna_A 106 VIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYD 185 (357)
T ss_dssp EECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHH
T ss_pred EecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHH
Confidence 0 0000 01123344455543 1 38999999996542 221111111111246789999998653221
Q ss_pred ----------h-CC-CceEEccCCCHHHHHHHHHHHhCCC-CCCcchHHHHHHHHHHhcCCcHHHHHHHHHHhc-CChhH
Q 039180 251 ----------M-GS-EKNFSIGILNEQEAWRLFKIIAGAY-VENRELKSTATSVAKACRGLPIALTIVVKALRN-KELPE 316 (790)
Q Consensus 251 ----------~-~~-~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~-~~~~~ 316 (790)
. +. ...+.+.+|+.+++.+++....... ..... ...|++.++|+|+++..++..+.. .+...
T Consensus 186 ~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~ 261 (357)
T 2fna_A 186 YLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----YEVVYEKIGGIPGWLTYFGFIYLDNKNLDF 261 (357)
T ss_dssp HTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----HHHHHHHHCSCHHHHHHHHHHHHHHCCHHH
T ss_pred HHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----HHHHHHHhCCCHHHHHHHHHHHccccchHH
Confidence 1 11 2579999999999999998765311 11122 178999999999999999887643 23333
Q ss_pred HHH-HHHHhcCCCCCCcCCCCchhhhhhHHHHHH-------HHhHHhHHHHhhhcccCCCCHHHHHHHHh-hcCc-cchH
Q 039180 317 WKN-ALQELQMPSETSFDEGVPAEAYSTIELSYK-------YLGKQLKETILLCSLIAPTSIMDLINYTM-GFGV-LKLE 386 (790)
Q Consensus 317 w~~-~l~~l~~~~~~~~~~~~~~~~~~~l~~sy~-------~L~~~~k~~f~~~s~fp~~~~~~Li~~w~-~eg~-~~~~ 386 (790)
|.. +.+. +...+.-.+. .|++..+..+..+|. .. +...+..... ..|. ++
T Consensus 262 ~~~~~~~~----------------~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g~-~~~~l~~~~~~~~g~~~~-- 321 (357)
T 2fna_A 262 AINQTLEY----------------AKKLILKEFENFLHGREIARKRYLNIMRTLSK-CG-KWSDVKRALELEEGIEIS-- 321 (357)
T ss_dssp HHHHHHHH----------------HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-CB-CHHHHHHHHHHHHCSCCC--
T ss_pred HHHHHHHH----------------HHHHHHHHHHHHhhccccccHHHHHHHHHHHc-CC-CHHHHHHHHHHhcCCCCC--
Confidence 321 1111 0111221122 578889999999988 33 5555543221 1121 11
Q ss_pred HHHHHHHHHHHHHHhccceeeeCCcCeEEe-ChhhHHHH
Q 039180 387 EAHNKLHAWVRQLRDSCLLLVDGSSKFFSM-HDVLRDVA 424 (790)
Q Consensus 387 ~~~~~~~~~~~~L~~~sll~~~~~~~~~~~-h~li~~~~ 424 (790)
...+.++++.|.+.+++...+ ..|++ |++++++.
T Consensus 322 --~~~~~~~L~~L~~~gli~~~~--~~y~f~~~~~~~~l 356 (357)
T 2fna_A 322 --DSEIYNYLTQLTKHSWIIKEG--EKYCPSEPLISLAF 356 (357)
T ss_dssp --HHHHHHHHHHHHHTTSEEESS--SCEEESSHHHHHHT
T ss_pred --HHHHHHHHHHHHhCCCEEecC--CEEEecCHHHHHhh
Confidence 233556889999999998763 46775 77888764
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.34 E-value=1.3e-12 Score=125.66 Aligned_cols=127 Identities=21% Similarity=0.287 Sum_probs=109.9
Q ss_pred EEEEecCccccCCChhhhhccccceeeccCccccccchh-hhhccCcccEEeccCCCCccc-chhhhcccccceecCCcc
Q 039180 504 RVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIA-IIGKLKNLKILSFVRSDIVQL-PKALGELTKLRLSDLTDC 581 (790)
Q Consensus 504 ~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~-~i~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~l~~~ 581 (790)
++++++++.++.+|..+.. +|++|++++|.++.+.+. .++.+++|++|+|++|.++.+ |..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 6899999999999987654 899999999999998443 489999999999999999966 678999999999999998
Q ss_pred ccccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCC
Q 039180 582 FHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDS 644 (790)
Q Consensus 582 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 644 (790)
.++.+++..+.++++|++|++++|.+. ...+..+..+++|+.|++++|...
T Consensus 89 -~l~~~~~~~~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 -KIKEISNKMFLGLHQLKTLNLYDNQIS-----------CVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp -CCCEECSSSSTTCTTCCEEECCSSCCC-----------EECTTSSTTCTTCCEEECTTCCBC
T ss_pred -cCCccCHHHhcCCCCCCEEECCCCcCC-----------eeCHHHhhcCCCCCEEEeCCCCcc
Confidence 788888877899999999999999874 233567888999999999988754
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.33 E-value=1.1e-12 Score=124.28 Aligned_cols=110 Identities=16% Similarity=0.209 Sum_probs=92.6
Q ss_pred ccCCceEEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccch--hhhcccccce
Q 039180 498 KGVKKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPK--ALGELTKLRL 575 (790)
Q Consensus 498 ~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~--~l~~l~~L~~ 575 (790)
...++|++|++++|.++.+ ..+..+++|++|++++|.++.+.+..++.+++|++|++++|.++.+|. .+..+++|++
T Consensus 39 ~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~ 117 (176)
T 1a9n_A 39 ATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTY 117 (176)
T ss_dssp GGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCE
T ss_pred hcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCE
Confidence 3445899999999998877 678889999999999999998844556899999999999999998887 7889999999
Q ss_pred ecCCccccccccCch---hhccccccceEecccCCcc
Q 039180 576 SDLTDCFHLKVIAPN---VISSLTRLEELYMGNCPIE 609 (790)
Q Consensus 576 L~l~~~~~l~~~~~~---~l~~l~~L~~L~l~~~~~~ 609 (790)
|++++| .+..+|.. .+..+++|+.|++++|...
T Consensus 118 L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 118 LCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 999998 66677654 4788999999999988753
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.32 E-value=3.7e-12 Score=122.47 Aligned_cols=125 Identities=22% Similarity=0.258 Sum_probs=106.5
Q ss_pred EEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccch-hhhcccccceecCCccc
Q 039180 504 RVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPK-ALGELTKLRLSDLTDCF 582 (790)
Q Consensus 504 ~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~~~ 582 (790)
++++++++.++.+|..+. .+|++|+|++|.++.+ |..+..+++|++|+|++|.++.++. .+..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~i-p~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N- 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLV-PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN- 88 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSC-CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchh-HHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-
Confidence 578999999999987664 6899999999999987 7899999999999999999997764 5889999999999998
Q ss_pred cccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCC
Q 039180 583 HLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKND 643 (790)
Q Consensus 583 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 643 (790)
.++.+++..+.++++|++|++++|.+.. .....+..+++|+.|++++|..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~-----------~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISV-----------VPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCB-----------CCTTTTTTCTTCCEEECCSSCE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCe-----------eChhhhhcCccccEEEeCCCCe
Confidence 7888888779999999999999998742 1233577788999999988763
No 137
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.32 E-value=4.6e-11 Score=130.13 Aligned_cols=277 Identities=16% Similarity=0.111 Sum_probs=160.7
Q ss_pred eeEEEE--EcCCCCcHhHHHHHHHHHhhhc---cCCC-EEEEEEeCCCCCHHHHHHHHHHHhCCCCch--hHHHHHHHHH
Q 039180 128 LNIIGV--YGMGGIGKTTLVKEFARRAIED---ELYD-MVVFSEVTQSPDIKQIQQEIAEKLGLELSE--EAEFRRASRM 199 (790)
Q Consensus 128 ~~vv~I--~G~~G~GKTtLa~~~~~~~~~~---~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~l 199 (790)
.+.+.| +|++|+||||||+.+++..... ..+. .++|+++....+...+...++.+++..... .+.......+
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l 129 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKAL 129 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 346666 9999999999999999876542 1233 367888877788999999999998765321 1122333444
Q ss_pred HHHHH-cCCcEEEEEeCCCCccC--------ccccCccCCC-C--C--CCcEEEEEeCChhHHhhh--------C-CCce
Q 039180 200 FERLK-NEKKILLILDNTWKSLD--------LGTIGIPFGV-E--H--RGCKLLFTTRDLDVLIRM--------G-SEKN 256 (790)
Q Consensus 200 ~~~l~-~~kr~LlVlDdv~~~~~--------~~~l~~~~~~-~--~--~gs~iliTtR~~~v~~~~--------~-~~~~ 256 (790)
.+.+. .+++++||+||++.... +..+...+.. . + ....+|+||+...+...+ . ....
T Consensus 130 ~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~ 209 (412)
T 1w5s_A 130 VDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFK 209 (412)
T ss_dssp HHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEE
T ss_pred HHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCe
Confidence 44443 35789999999976432 1111111111 1 2 344588788755432111 1 1234
Q ss_pred EEccCCCHHHHHHHHHHHhCCC-CCCcchHHHHHHHHHHhc------CCcHHHHHHHHH-Hh-----cC---ChhHHHHH
Q 039180 257 FSIGILNEQEAWRLFKIIAGAY-VENRELKSTATSVAKACR------GLPIALTIVVKA-LR-----NK---ELPEWKNA 320 (790)
Q Consensus 257 ~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~~~~~~~i~~~~~------glPlai~~~~~~-l~-----~~---~~~~w~~~ 320 (790)
+.+.+++.++++++|...+... .......+....|++.++ |.|..+..+... .. +. +.+.+..+
T Consensus 210 i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~ 289 (412)
T 1w5s_A 210 LHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKA 289 (412)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHH
T ss_pred eeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 9999999999999997764311 111223567888999999 999765555432 21 11 33444444
Q ss_pred HHHhcCCCCCCcCCCCchhhhhhHHHHHHHHhHHhHHHHhhhccc---C--CCCHHHHHHHHh--h---cCccchHHHHH
Q 039180 321 LQELQMPSETSFDEGVPAEAYSTIELSYKYLGKQLKETILLCSLI---A--PTSIMDLINYTM--G---FGVLKLEEAHN 390 (790)
Q Consensus 321 l~~l~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~f~~~s~f---p--~~~~~~Li~~w~--~---eg~~~~~~~~~ 390 (790)
...... ...+.-++..||++.+.++..++.+ . .++..++...+. + .|.-.. ...
T Consensus 290 ~~~~~~--------------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 353 (412)
T 1w5s_A 290 VSENEA--------------ASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPR--GYT 353 (412)
T ss_dssp HHHC--------------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCCC--CHH
T ss_pred HHHHhc--------------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCCCC--CHH
Confidence 443210 0011223456788888888888864 2 455655544332 1 121000 123
Q ss_pred HHHHHHHHHHhccceeee----CCcCeEEeChhh
Q 039180 391 KLHAWVRQLRDSCLLLVD----GSSKFFSMHDVL 420 (790)
Q Consensus 391 ~~~~~~~~L~~~sll~~~----~~~~~~~~h~li 420 (790)
.+.+++++|.+.+++... +..+.|++|.+.
T Consensus 354 ~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 354 QYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp HHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred HHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 455689999999999765 233445555554
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.28 E-value=1.2e-11 Score=117.32 Aligned_cols=108 Identities=25% Similarity=0.401 Sum_probs=72.6
Q ss_pred CceEEEEecCccccCCCh-hhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchh-hhcccccceecC
Q 039180 501 KKLRVVALVKMLLSSLPS-SIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKA-LGELTKLRLSDL 578 (790)
Q Consensus 501 ~~L~~L~L~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l 578 (790)
++|+.|++++|.++.+|. .+..+++|++|++++|.++.+.+..++.+++|++|++++|.++.+|.. +..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 466777777777766543 356677777777777777766445566777777777777777766554 466777777777
Q ss_pred CccccccccCchhhccccccceEecccCCcc
Q 039180 579 TDCFHLKVIAPNVISSLTRLEELYMGNCPIE 609 (790)
Q Consensus 579 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 609 (790)
++| .++.+|+..+..+++|++|++++|.+.
T Consensus 108 ~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 108 DTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence 776 566666665566777777777777654
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.27 E-value=1.4e-12 Score=151.51 Aligned_cols=130 Identities=23% Similarity=0.265 Sum_probs=91.9
Q ss_pred ccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccE
Q 039180 473 SAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKI 552 (790)
Q Consensus 473 ~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~ 552 (790)
...++.|.+ ++|.+. .+|..++ ++++|++|+|++|.++.+|..|++|++|++|+|++|.++.+ |..|++|++|++
T Consensus 223 l~~L~~L~L-s~n~l~--~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~ 297 (727)
T 4b8c_D 223 DQLWHALDL-SNLQIF--NISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSL-PAELGSCFQLKY 297 (727)
T ss_dssp CCCCCEEEC-TTSCCS--CCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSC-CSSGGGGTTCSE
T ss_pred CCCCcEEEC-CCCCCC--CCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCcc-ChhhcCCCCCCE
Confidence 344444443 444454 5777765 78888888888888888888888888888888888888866 888888888888
Q ss_pred EeccCCCCcccchhhhcccccceecCCccccccccCchhhccccc-cceEecccCCc
Q 039180 553 LSFVRSDIVQLPKALGELTKLRLSDLTDCFHLKVIAPNVISSLTR-LEELYMGNCPI 608 (790)
Q Consensus 553 L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~-L~~L~l~~~~~ 608 (790)
|+|++|.|+.+|..++.|++|++|+|++| .+...++..+..+.. +..|++.+|.+
T Consensus 298 L~L~~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~~~~~~~~l~l~~N~l 353 (727)
T 4b8c_D 298 FYFFDNMVTTLPWEFGNLCNLQFLGVEGN-PLEKQFLKILTEKSVTGLIFYLRDNRP 353 (727)
T ss_dssp EECCSSCCCCCCSSTTSCTTCCCEECTTS-CCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred EECCCCCCCccChhhhcCCCccEEeCCCC-ccCCCChHHHhhcchhhhHHhhccCcc
Confidence 88888888888888888888888888887 455444444433321 12244555544
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.25 E-value=1.7e-11 Score=116.28 Aligned_cols=130 Identities=22% Similarity=0.268 Sum_probs=107.0
Q ss_pred ceEEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchh-hhcccccceecCCc
Q 039180 502 KLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKA-LGELTKLRLSDLTD 580 (790)
Q Consensus 502 ~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l~~ 580 (790)
..+.++++++.+..+|..+. .+|++|++++|.++.+.+..++.+++|++|++++|.++.+|.. +..+++|++|++++
T Consensus 8 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp ETTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 35678899999998886553 7899999999999988666789999999999999999988765 58899999999999
Q ss_pred cccccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCC
Q 039180 581 CFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSI 645 (790)
Q Consensus 581 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 645 (790)
| .++.+++..+.++++|++|++++|.+.. .....+..+++|+.|++++|....
T Consensus 86 N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~-----------~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 N-KLQSLPNGVFDKLTQLKELALDTNQLKS-----------VPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCCSC-----------CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred C-CccccCHHHhhCCcccCEEECcCCcceE-----------eCHHHhcCCcccCEEEecCCCeec
Confidence 8 7888888778899999999999998741 122345778889999998887543
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.22 E-value=1.6e-12 Score=125.77 Aligned_cols=141 Identities=18% Similarity=0.310 Sum_probs=107.0
Q ss_pred CCChhhhccCCceEEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhhhcc
Q 039180 491 NIPENFFKGVKKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGEL 570 (790)
Q Consensus 491 ~lp~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l 570 (790)
.+|. .+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+ |..++.+++|++|++++|.++.+| .+..+
T Consensus 39 ~l~~-~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l 114 (198)
T 1ds9_A 39 KMDA-TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASLS-GIEKL 114 (198)
T ss_dssp CCHH-HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSC-SSHHHHHHHCSEEEEEEEECCCHH-HHHHH
T ss_pred hhhH-HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccc-cchhhcCCcCCEEECcCCcCCcCC-ccccC
Confidence 3555 4578999999999999998888 888999999999999998877 778888899999999999888887 58889
Q ss_pred cccceecCCccccccccCc-hhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEE
Q 039180 571 TKLRLSDLTDCFHLKVIAP-NVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLE 637 (790)
Q Consensus 571 ~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 637 (790)
++|++|++++| .++.++. ..+..+++|++|++++|.+....+.. +.........+..+++|+.|+
T Consensus 115 ~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~-~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 115 VNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN-NATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTT-TTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccc-cchHHHHHHHHHhCCCcEEEC
Confidence 99999999997 6666554 45788999999999998775332210 000011122366778888776
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.21 E-value=2.1e-11 Score=114.89 Aligned_cols=103 Identities=28% Similarity=0.474 Sum_probs=73.7
Q ss_pred EEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchh-hhcccccceecCCccc
Q 039180 504 RVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKA-LGELTKLRLSDLTDCF 582 (790)
Q Consensus 504 ~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l~~~~ 582 (790)
+.++++++.++.+|..+. .+|++|+|++|.++++.|..++++++|++|+|++|.++.+|.. +..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N- 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN- 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-
Confidence 567777777777776553 6777777777777777666777777777777777777777665 367777777777776
Q ss_pred cccccCchhhccccccceEecccCCcc
Q 039180 583 HLKVIAPNVISSLTRLEELYMGNCPIE 609 (790)
Q Consensus 583 ~l~~~~~~~l~~l~~L~~L~l~~~~~~ 609 (790)
.++.+|+..+.++++|++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 666676666677777777777777653
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.21 E-value=1.7e-11 Score=129.00 Aligned_cols=101 Identities=9% Similarity=0.114 Sum_probs=64.0
Q ss_pred CCceEEEEecCccccCCChhhhhccccceeeccCccccccchhhhhc--------cCcccEEeccCCCCcccchh-hhcc
Q 039180 500 VKKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGK--------LKNLKILSFVRSDIVQLPKA-LGEL 570 (790)
Q Consensus 500 l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~--------l~~L~~L~L~~~~l~~lp~~-l~~l 570 (790)
+++|++|||++|.+......-+.++.++++.+..+.+. +..|.+ |++|+.|+|.. .++.++.. +..|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~---~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~ 123 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVP---AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGC 123 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEEC---TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccC---HHHhcccccccccccCCCcEEECCc-cccchhHHHhhcC
Confidence 77899999999988722111122233455555555332 345556 78888888877 67766653 6777
Q ss_pred cccceecCCccccccccCchhhccccccceEeccc
Q 039180 571 TKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGN 605 (790)
Q Consensus 571 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 605 (790)
++|+.+++++| .+..+++..+..+.++..+....
T Consensus 124 ~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 124 DNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp TTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTC
T ss_pred cccceEEcCCC-CccccchhhhcCCCceEEecCcc
Confidence 88888888776 55566777677776666665544
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.20 E-value=2.5e-11 Score=114.05 Aligned_cols=104 Identities=24% Similarity=0.363 Sum_probs=81.5
Q ss_pred eEEEEecCccccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchh-hhcccccceecCCcc
Q 039180 503 LRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKA-LGELTKLRLSDLTDC 581 (790)
Q Consensus 503 L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l~~~ 581 (790)
.+.++++++.++.+|..+. .+|++|+|++|.++++.|..++.+++|++|+|++|.++.+|.. +..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4677888888888877653 7788888888888887677788888888888888888877765 477888888888887
Q ss_pred ccccccCchhhccccccceEecccCCcc
Q 039180 582 FHLKVIAPNVISSLTRLEELYMGNCPIE 609 (790)
Q Consensus 582 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 609 (790)
.++.+++..+.++++|++|++++|.+.
T Consensus 89 -~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 -QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred -ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 677777766778888888888888663
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.19 E-value=2.1e-11 Score=128.19 Aligned_cols=102 Identities=14% Similarity=0.030 Sum_probs=63.2
Q ss_pred ccccceeEEEecCCCCCCC-ccccCCccCeeeccceecceecccCCCccccccCCCcc-EEeeccCCcccccchhHHHhc
Q 039180 652 TQKLERFKISIGNESFMPS-QSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLT-RLIVRSCPKLKYIFSASMIQN 729 (790)
Q Consensus 652 ~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~-~L~L~~~~~l~~~~~~~~~~~ 729 (790)
+++|+.++++.|.+..++. .+..+++|+.|.+.++ ++.+ .+..+.+|++|+ .+.+.+ .++.++. ..+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I-----~~~aF~~~~~L~~~l~l~~--~l~~I~~-~aF~~ 295 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTI-----GQRVFSNCGRLAGTLELPA--SVTAIEF-GAFMG 295 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEE-----CTTTTTTCTTCCEEEEECT--TCCEECT-TTTTT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-ccee-----hHHHhhCChhccEEEEEcc--cceEEch-hhhhC
Confidence 4555666665555555544 5566777777777776 5544 344467777787 777776 4666643 45677
Q ss_pred cccccEEeeccCchhhhHhhcCCCCCCCCcccCCccceeec
Q 039180 730 FELLRELSIADCRGLREIISKDRADHVTPCFVFPQMTTLRL 770 (790)
Q Consensus 730 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~p~L~~L~l 770 (790)
|++|+.|++.+. .++.+...... .+++|+.+..
T Consensus 296 c~~L~~l~l~~n-~i~~I~~~aF~-------~~~~L~~ly~ 328 (329)
T 3sb4_A 296 CDNLRYVLATGD-KITTLGDELFG-------NGVPSKLIYK 328 (329)
T ss_dssp CTTEEEEEECSS-CCCEECTTTTC-------TTCCCCEEEC
T ss_pred CccCCEEEeCCC-ccCccchhhhc-------CCcchhhhcc
Confidence 788888877653 45555543332 4777777653
No 146
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.18 E-value=6e-10 Score=119.95 Aligned_cols=263 Identities=11% Similarity=0.047 Sum_probs=157.7
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhcc-----C-CCEEEEEEeCCCC-CHHHHHHHHHHHh-CCCCc--hhHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDE-----L-YDMVVFSEVTQSP-DIKQIQQEIAEKL-GLELS--EEAEFRRAS 197 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~-----~-f~~~~wv~~~~~~-~~~~~~~~i~~~l-~~~~~--~~~~~~~~~ 197 (790)
.+.+.|+|++|+||||+|+.+++...... . ...++|+++.... +...+...++..+ +.... .........
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 124 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYID 124 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHH
Confidence 56899999999999999999998764321 1 3457888887766 8888889988887 22211 111223345
Q ss_pred HHHHHHHcCCcEEEEEeCCCCccC---ccccCccCCCCCCCcEEEEEeCChhHH----hh--hCCCceEEccCCCHHHHH
Q 039180 198 RMFERLKNEKKILLILDNTWKSLD---LGTIGIPFGVEHRGCKLLFTTRDLDVL----IR--MGSEKNFSIGILNEQEAW 268 (790)
Q Consensus 198 ~l~~~l~~~kr~LlVlDdv~~~~~---~~~l~~~~~~~~~gs~iliTtR~~~v~----~~--~~~~~~~~l~~L~~~~~~ 268 (790)
.+.+.+.. ++.+|||||++.... .+.+...+.....+..+|+||+..... .. ......+.+.+++.++..
T Consensus 125 ~l~~~l~~-~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~ 203 (384)
T 2qby_B 125 KIKNGTRN-IRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLK 203 (384)
T ss_dssp HHHHHHSS-SCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHH
T ss_pred HHHHHhcc-CCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHH
Confidence 56666654 344999999976532 222011111111677899999875321 11 111238999999999999
Q ss_pred HHHHHHhCC-CCCCcchHHHHHHHHHHhc---CCcH-HHHHHHHHHh-----cC-ChhHHHHHHHHhcCCCCCCcCCCCc
Q 039180 269 RLFKIIAGA-YVENRELKSTATSVAKACR---GLPI-ALTIVVKALR-----NK-ELPEWKNALQELQMPSETSFDEGVP 337 (790)
Q Consensus 269 ~Lf~~~~~~-~~~~~~~~~~~~~i~~~~~---glPl-ai~~~~~~l~-----~~-~~~~w~~~l~~l~~~~~~~~~~~~~ 337 (790)
+++...+.. .....-.++..+.+++.++ |.|. |+..+..+.. .. +.+.+..++....
T Consensus 204 ~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~------------ 271 (384)
T 2qby_B 204 FILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYE------------ 271 (384)
T ss_dssp HHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHH------------
T ss_pred HHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh------------
Confidence 999987531 1111112345677888888 8887 4444443331 12 5666766666532
Q ss_pred hhhhhhHHHHHHHHhHHhHHHHhhhcc-cCCCCH-HHHHHHHhhcCccchHHHHHHHHHHHHHHHhccceeee
Q 039180 338 AEAYSTIELSYKYLGKQLKETILLCSL-IAPTSI-MDLINYTMGFGVLKLEEAHNKLHAWVRQLRDSCLLLVD 408 (790)
Q Consensus 338 ~~~~~~l~~sy~~L~~~~k~~f~~~s~-fp~~~~-~~Li~~w~~eg~~~~~~~~~~~~~~~~~L~~~sll~~~ 408 (790)
...+..++..|+++.+..+..++. +..-+. .......-..|... -....+.++++.|...+++...
T Consensus 272 ---~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 272 ---QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKP--LSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp ---HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCC--CCHHHHHHHHHHHHHTTSEEEE
T ss_pred ---cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCC--CCHHHHHHHHHHHHhCCCEEEE
Confidence 234666778888887777766665 211001 11111111222110 1224566789999999999864
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.18 E-value=2.9e-10 Score=122.22 Aligned_cols=221 Identities=15% Similarity=0.179 Sum_probs=164.7
Q ss_pred CCChhhhccCCceEEEEecCccccCCC-hhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhhhc
Q 039180 491 NIPENFFKGVKKLRVVALVKMLLSSLP-SSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGE 569 (790)
Q Consensus 491 ~lp~~~~~~l~~L~~L~L~~~~~~~lp-~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~ 569 (790)
.|+...|.++ +|+.+.+..+ ++.++ ..|.+ .+|+.+.+.. .++.+.+..|.+|.+|+.+++..|.++.+|.....
T Consensus 126 ~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~ 201 (401)
T 4fdw_A 126 SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV 201 (401)
T ss_dssp EECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT
T ss_pred EehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe
Confidence 4667777776 7999998766 66664 34555 4799999986 67777678899999999999999999999887766
Q ss_pred ccccceecCCccccccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCcc
Q 039180 570 LTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPES 649 (790)
Q Consensus 570 l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 649 (790)
+.+|+.+.+.. .+..++...+.++++|+.+.+..+-. .-....+.. .+|+.+.+. +.+..++..
T Consensus 202 ~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~l~------------~I~~~aF~~-~~L~~i~lp-~~i~~I~~~ 265 (401)
T 4fdw_A 202 YAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPENVS------------TIGQEAFRE-SGITTVKLP-NGVTNIASR 265 (401)
T ss_dssp TCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTTCC------------EECTTTTTT-CCCSEEEEE-TTCCEECTT
T ss_pred ecccCEEEeCC--chheehhhHhhCCCCCCEEecCCCcc------------Ccccccccc-CCccEEEeC-CCccEEChh
Confidence 88999999986 47888888899999999999876521 111223444 578999884 445555443
Q ss_pred c--cccccceeEEEecCCC-----CCCC-ccccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCCccccc
Q 039180 650 F--LTQKLERFKISIGNES-----FMPS-QSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYI 721 (790)
Q Consensus 650 ~--~~~~L~~L~l~~~~~~-----~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~ 721 (790)
. .|++|+.+.+..+... .++. .+..+++|+.+.+.+ +++.+ ....+.+|++|+.+.|..+ ++.+
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I-----~~~aF~~c~~L~~l~lp~~--l~~I 337 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRIL-----GQGLLGGNRKVTQLTIPAN--VTQI 337 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEE-----CTTTTTTCCSCCEEEECTT--CCEE
T ss_pred HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEE-----hhhhhcCCCCccEEEECcc--ccEE
Confidence 3 3789999999887664 2333 677888999999985 46655 2344788999999999665 6666
Q ss_pred chhHHHhccccccEEeeccC
Q 039180 722 FSASMIQNFELLRELSIADC 741 (790)
Q Consensus 722 ~~~~~~~~l~~L~~L~l~~c 741 (790)
.. ..+.+| +|+.|.+.++
T Consensus 338 ~~-~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 338 NF-SAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp CT-TSSSSS-CCCEEEECCS
T ss_pred cH-HhCCCC-CCCEEEEcCC
Confidence 43 567788 9999999886
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.17 E-value=1.1e-12 Score=126.98 Aligned_cols=126 Identities=22% Similarity=0.236 Sum_probs=103.2
Q ss_pred eEEEEecCc--cccCCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhhhcccccceecCCc
Q 039180 503 LRVVALVKM--LLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGELTKLRLSDLTD 580 (790)
Q Consensus 503 L~~L~L~~~--~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~ 580 (790)
|+...+.++ .++.+|..++.+++|++|++++|.++.+ | .++.+++|++|++++|.++.+|..+..+++|++|++++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l-~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY 102 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCC-C-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccc-c-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC
Confidence 344444443 4556667999999999999999999996 6 89999999999999999999999888899999999999
Q ss_pred cccccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCC
Q 039180 581 CFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKND 643 (790)
Q Consensus 581 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 643 (790)
| .++.+| . ++++++|++|++++|.+... ..+..+..+++|+.|++++|.+
T Consensus 103 N-~l~~l~-~-~~~l~~L~~L~l~~N~i~~~----------~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 103 N-QIASLS-G-IEKLVNLRVLYMSNNKITNW----------GEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp E-ECCCHH-H-HHHHHHSSEEEESEEECCCH----------HHHHHHTTTTTCSEEEECSCHH
T ss_pred C-cCCcCC-c-cccCCCCCEEECCCCcCCch----------hHHHHHhcCCCCCEEEecCCcc
Confidence 8 777776 3 88999999999999987421 1124678899999999988864
No 149
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.07 E-value=7e-09 Score=111.69 Aligned_cols=265 Identities=14% Similarity=0.085 Sum_probs=158.9
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhc----cCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCch--hHHHHHHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIED----ELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSE--EAEFRRASRMF 200 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~l~ 200 (790)
..+.+.|+|++|+||||+|+.+++..... ..-..++|+++....+...+...++.+++..... ....+....+.
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~ 122 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLV 122 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 45689999999999999999999876432 1123467888888889999999999998764332 11233345555
Q ss_pred HHHH-cCCcEEEEEeCCCCccCc----cccCccCC--CC---CCCcEEEEEeCChhHHhh-----hCCC--ceEEccCCC
Q 039180 201 ERLK-NEKKILLILDNTWKSLDL----GTIGIPFG--VE---HRGCKLLFTTRDLDVLIR-----MGSE--KNFSIGILN 263 (790)
Q Consensus 201 ~~l~-~~kr~LlVlDdv~~~~~~----~~l~~~~~--~~---~~gs~iliTtR~~~v~~~-----~~~~--~~~~l~~L~ 263 (790)
+.+. .+++.+|||||++..... +.+...+. .. ..+..+|.||+....... .... ..+.+.+++
T Consensus 123 ~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~ 202 (387)
T 2v1u_A 123 KRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYT 202 (387)
T ss_dssp HHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCC
T ss_pred HHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCC
Confidence 5554 356899999999865321 22211111 11 345578888876522111 1111 478999999
Q ss_pred HHHHHHHHHHHhCC-CCCCcchHHHHHHHHHHhc---CCcHH-HHHHHHHHh-----c--C-ChhHHHHHHHHhcCCCCC
Q 039180 264 EQEAWRLFKIIAGA-YVENRELKSTATSVAKACR---GLPIA-LTIVVKALR-----N--K-ELPEWKNALQELQMPSET 330 (790)
Q Consensus 264 ~~~~~~Lf~~~~~~-~~~~~~~~~~~~~i~~~~~---glPla-i~~~~~~l~-----~--~-~~~~w~~~l~~l~~~~~~ 330 (790)
.++..+++...+.. .....-.++..+.+++.++ |.|.. +..+..+.. + . +.+.+..++....
T Consensus 203 ~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~----- 277 (387)
T 2v1u_A 203 APQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIE----- 277 (387)
T ss_dssp HHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh-----
Confidence 99999999887531 0011112345677888888 99943 333332221 1 1 5566666655531
Q ss_pred CcCCCCchhhhhhHHHHHHHHhHHhHHHHhhhc-cc-C--CCCHHHHHHHHh----hcCccchHHHHHHHHHHHHHHHhc
Q 039180 331 SFDEGVPAEAYSTIELSYKYLGKQLKETILLCS-LI-A--PTSIMDLINYTM----GFGVLKLEEAHNKLHAWVRQLRDS 402 (790)
Q Consensus 331 ~~~~~~~~~~~~~l~~sy~~L~~~~k~~f~~~s-~f-p--~~~~~~Li~~w~----~eg~~~~~~~~~~~~~~~~~L~~~ 402 (790)
...+.-++..|+++.+..+...+ .+ . .+...++.+... ..|... -+...+.+++++|...
T Consensus 278 ----------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~L~~~ 345 (387)
T 2v1u_A 278 ----------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLGLEH--VTLRRVSGIISELDML 345 (387)
T ss_dssp ----------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTTCCC--CCHHHHHHHHHHHHHT
T ss_pred ----------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHHHhC
Confidence 23455667888888777666555 33 2 344443333221 112100 1234566789999999
Q ss_pred cceeee
Q 039180 403 CLLLVD 408 (790)
Q Consensus 403 sll~~~ 408 (790)
|++...
T Consensus 346 gli~~~ 351 (387)
T 2v1u_A 346 GIVKSR 351 (387)
T ss_dssp TSEEEE
T ss_pred CCeEEE
Confidence 999874
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.05 E-value=2.1e-10 Score=107.98 Aligned_cols=102 Identities=21% Similarity=0.278 Sum_probs=74.3
Q ss_pred ecccCCCCCCCCCChhhhccCCceEEEEecCccccCC-ChhhhhccccceeeccCccccccchhhhhccCcccEEeccCC
Q 039180 480 LMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSL-PSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRS 558 (790)
Q Consensus 480 ~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~ 558 (790)
+..+++.+. .+|..+. ++|++|+|++|.+..+ |..|..+++|++|+|++|.++.+.+..++++++|++|+|++|
T Consensus 17 l~~~~n~l~--~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 17 VNCQNIRLA--SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp EECCSSCCS--SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEeCCCCCC--ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 334444444 4555442 6788888888888876 667788888888888888888874555678888888888888
Q ss_pred CCcccchh-hhcccccceecCCcccccccc
Q 039180 559 DIVQLPKA-LGELTKLRLSDLTDCFHLKVI 587 (790)
Q Consensus 559 ~l~~lp~~-l~~l~~L~~L~l~~~~~l~~~ 587 (790)
.++.+|.. +..+++|++|++++| .+...
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N-~~~c~ 120 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNN-PWDCE 120 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSS-CBCTT
T ss_pred ccceeCHHHhccccCCCEEEeCCC-Ccccc
Confidence 88877765 778888888888887 44433
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.02 E-value=1.7e-09 Score=116.23 Aligned_cols=254 Identities=13% Similarity=0.185 Sum_probs=166.5
Q ss_pred ceeEEEeecccccCCCCc-cCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCC-Chhhhhccccceee
Q 039180 453 KYLAISLINSRINDIPEG-LESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSL-PSSIYLLVNLQTLC 530 (790)
Q Consensus 453 ~l~~l~l~~~~~~~l~~~-~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~ 530 (790)
.+..+.+.+ .+..|+.. +..++++.+.+- ++ +. .++...|.++ +|+.+.+.+ .+..+ +..|.+|.+|+.++
T Consensus 114 ~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~-~~-i~--~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 114 GYNEIILPN-SVKSIPKDAFRNSQIAKVVLN-EG-LK--SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SCSEEECCT-TCCEECTTTTTTCCCSEEECC-TT-CC--EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred CccEEEECC-ccCEehHhhcccCCccEEEeC-CC-cc--EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 444444442 33334332 233456665543 22 33 5777777775 688888875 55655 45778888899999
Q ss_pred ccCccccccchhhhhccCcccEEeccCCCCcccch-hhhcccccceecCCccccccccCchhhccccccceEecccCCcc
Q 039180 531 LDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPK-ALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIE 609 (790)
Q Consensus 531 L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 609 (790)
+..|.++.+....|. +.+|+.+.+..+ ++.++. .+.++++|+.+.+..+ +..++...+.+ .+|+.+.+.++ +.
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~-i~ 260 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNG-VT 260 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETT-CC
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCC-cc
Confidence 888888887455555 688888888754 666554 4677888888888873 67777777777 78888887443 21
Q ss_pred chhhcccccccccccccccCCCCCcEEEEEecCCC-----CCCccc--cccccceeEEEecCCCCCCC-ccccCCccCee
Q 039180 610 WEVERANSERSNSSLDELMNLPWLTTLEIDVKNDS-----ILPESF--LTQKLERFKISIGNESFMPS-QSVELPNLEAL 681 (790)
Q Consensus 610 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~~--~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L 681 (790)
.-....+..+++|+.+.+.++... .++... .|++|+.+.+.. .+..++. .+..+++|+.+
T Consensus 261 -----------~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l 328 (401)
T 4fdw_A 261 -----------NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQL 328 (401)
T ss_dssp -----------EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEE
T ss_pred -----------EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEE
Confidence 112346778888888888776543 233332 277888888873 3444444 66778899999
Q ss_pred eccceecceecccCCCccccccCCCccEEeeccCCcccccchhHHHhccc-cccEEeecc
Q 039180 682 ELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFE-LLRELSIAD 740 (790)
Q Consensus 682 ~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~-~L~~L~l~~ 740 (790)
.|..+ ++.+ .+..+.++ +|+.+.+.++ .+..++. ..+.+++ .++.|.+..
T Consensus 329 ~lp~~-l~~I-----~~~aF~~~-~L~~l~l~~n-~~~~l~~-~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 329 TIPAN-VTQI-----NFSAFNNT-GIKEVKVEGT-TPPQVFE-KVWYGFPDDITVIRVPA 379 (401)
T ss_dssp EECTT-CCEE-----CTTSSSSS-CCCEEEECCS-SCCBCCC-SSCCCSCTTCCEEEECG
T ss_pred EECcc-ccEE-----cHHhCCCC-CCCEEEEcCC-CCccccc-ccccCCCCCccEEEeCH
Confidence 99654 5554 23447788 9999999988 3444432 3455664 788888876
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.98 E-value=6.6e-10 Score=104.22 Aligned_cols=81 Identities=23% Similarity=0.318 Sum_probs=63.1
Q ss_pred CceEEEEecCccccCC-ChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchh-hhcccccceecC
Q 039180 501 KKLRVVALVKMLLSSL-PSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKA-LGELTKLRLSDL 578 (790)
Q Consensus 501 ~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l 578 (790)
+.|++|+|++|.++.+ |..|..+++|++|+|++|.++.+.+..+..+++|++|+|++|.++.+|.. +..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 5677788888888776 56677888888888888888877555667888888888888888877764 677888888888
Q ss_pred Ccc
Q 039180 579 TDC 581 (790)
Q Consensus 579 ~~~ 581 (790)
++|
T Consensus 110 ~~N 112 (170)
T 3g39_A 110 LNN 112 (170)
T ss_dssp CSS
T ss_pred CCC
Confidence 887
No 153
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.98 E-value=7.9e-08 Score=103.44 Aligned_cols=263 Identities=14% Similarity=0.104 Sum_probs=159.6
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCch--hHHHHHHHHHHHHHH-
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSE--EAEFRRASRMFERLK- 204 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~l~~~l~- 204 (790)
.+.+.|+|++|+||||+|+.++....... -..++|++++...+...+...++..++..... .........+.+.+.
T Consensus 44 ~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 122 (389)
T 1fnn_A 44 YPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRE 122 (389)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhh
Confidence 34899999999999999999998865331 13577888888888889999999988754321 122233334444443
Q ss_pred cCCcEEEEEeCCCCc--cCccccCccCCC-CC---CCcEEEEEeCChhHHhhhC-------CCceEEccCCCHHHHHHHH
Q 039180 205 NEKKILLILDNTWKS--LDLGTIGIPFGV-EH---RGCKLLFTTRDLDVLIRMG-------SEKNFSIGILNEQEAWRLF 271 (790)
Q Consensus 205 ~~kr~LlVlDdv~~~--~~~~~l~~~~~~-~~---~gs~iliTtR~~~v~~~~~-------~~~~~~l~~L~~~~~~~Lf 271 (790)
.+++.+|||||++.. .....+...+.. .. .+..+|++|+.......+. ....+.+.+++.++..+++
T Consensus 123 ~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l 202 (389)
T 1fnn_A 123 RDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDIL 202 (389)
T ss_dssp TTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHH
T ss_pred cCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHH
Confidence 346899999999765 222222222211 11 3667888887754333221 1237999999999999999
Q ss_pred HHHhCCC-CCCcchHHHHHHHHHHh---------cCCcHHHHHHHH-HHh-----cC---ChhHHHHHHHHhcCCCCCCc
Q 039180 272 KIIAGAY-VENRELKSTATSVAKAC---------RGLPIALTIVVK-ALR-----NK---ELPEWKNALQELQMPSETSF 332 (790)
Q Consensus 272 ~~~~~~~-~~~~~~~~~~~~i~~~~---------~glPlai~~~~~-~l~-----~~---~~~~w~~~l~~l~~~~~~~~ 332 (790)
...+... ....-.++..+.+++.+ +|.|..+..+.. +.. +. +.+....+.....
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~------- 275 (389)
T 1fnn_A 203 LDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL------- 275 (389)
T ss_dssp HHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS-------
T ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh-------
Confidence 8876421 11122356788899999 788755444333 221 11 3334444444322
Q ss_pred CCCCchhhhhhHHHHHHHHhHHhHHHHhhhcccC------CCCHHHHHHHHhh----cCccchHHHHHHHHHHHHHHHhc
Q 039180 333 DEGVPAEAYSTIELSYKYLGKQLKETILLCSLIA------PTSIMDLINYTMG----FGVLKLEEAHNKLHAWVRQLRDS 402 (790)
Q Consensus 333 ~~~~~~~~~~~l~~sy~~L~~~~k~~f~~~s~fp------~~~~~~Li~~w~~----eg~~~~~~~~~~~~~~~~~L~~~ 402 (790)
...+.-.+..|+.+.+.++..++.+. .+....+...+.. .|.... ....+.+++++|...
T Consensus 276 --------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~l~~L~~~ 345 (389)
T 1fnn_A 276 --------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERPR--VHSQLWSYLNDLREK 345 (389)
T ss_dssp --------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCCC--CHHHHHHHHHHHHHT
T ss_pred --------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCCC--CHHHHHHHHHHHHhC
Confidence 11234456778888887777666432 3444555443322 121111 124566789999999
Q ss_pred cceeee
Q 039180 403 CLLLVD 408 (790)
Q Consensus 403 sll~~~ 408 (790)
+++...
T Consensus 346 gli~~~ 351 (389)
T 1fnn_A 346 GIVETR 351 (389)
T ss_dssp TSSEEE
T ss_pred CCeEEe
Confidence 999874
No 154
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.97 E-value=6.4e-09 Score=111.95 Aligned_cols=265 Identities=14% Similarity=0.097 Sum_probs=154.0
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccC-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCch--hHHHHHHHHHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDEL-YDMVVFSEVTQSPDIKQIQQEIAEKLGLELSE--EAEFRRASRMFERL 203 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~l~~~l 203 (790)
..+.+.|+|++|+||||||+.+++....... -..++|+++....+...+...++..++..... ....+....+.+.+
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 123 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAV 123 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999999987654311 23577888877777788888888877654321 11223344555555
Q ss_pred Hc-CCcEEEEEeCCCCccC------ccccCccCCC-CCCCcEEEEEeCChhHHhhhC-------CCceEEccCCCHHHHH
Q 039180 204 KN-EKKILLILDNTWKSLD------LGTIGIPFGV-EHRGCKLLFTTRDLDVLIRMG-------SEKNFSIGILNEQEAW 268 (790)
Q Consensus 204 ~~-~kr~LlVlDdv~~~~~------~~~l~~~~~~-~~~gs~iliTtR~~~v~~~~~-------~~~~~~l~~L~~~~~~ 268 (790)
.. +++.+||+|+++.... +..+...+.. ...+..+|+||+.......+. ....+.+.+++.++..
T Consensus 124 ~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~ 203 (386)
T 2qby_A 124 RDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELE 203 (386)
T ss_dssp HTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHH
T ss_pred hccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHH
Confidence 43 4589999999976421 1111111111 233556788888754332211 1148999999999999
Q ss_pred HHHHHHhCC-CCCCcchHHHHHHHHHHhc---CCcHHHHHH-HHHHh-----c--C-ChhHHHHHHHHhcCCCCCCcCCC
Q 039180 269 RLFKIIAGA-YVENRELKSTATSVAKACR---GLPIALTIV-VKALR-----N--K-ELPEWKNALQELQMPSETSFDEG 335 (790)
Q Consensus 269 ~Lf~~~~~~-~~~~~~~~~~~~~i~~~~~---glPlai~~~-~~~l~-----~--~-~~~~w~~~l~~l~~~~~~~~~~~ 335 (790)
+++...+.. .....-..+..+.+++.++ |.|..+..+ ..+.. + . +.+.++.++....
T Consensus 204 ~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~---------- 273 (386)
T 2qby_A 204 DILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE---------- 273 (386)
T ss_dssp HHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH----------
T ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh----------
Confidence 999886531 1112223456777888887 999844333 32221 1 1 4455555544421
Q ss_pred CchhhhhhHHHHHHHHhHHhHHHHhhhccc---C--CCCHHHHHHHHh----hcCccchHHHHHHHHHHHHHHHhcccee
Q 039180 336 VPAEAYSTIELSYKYLGKQLKETILLCSLI---A--PTSIMDLINYTM----GFGVLKLEEAHNKLHAWVRQLRDSCLLL 406 (790)
Q Consensus 336 ~~~~~~~~l~~sy~~L~~~~k~~f~~~s~f---p--~~~~~~Li~~w~----~eg~~~~~~~~~~~~~~~~~L~~~sll~ 406 (790)
...+.-++..+++..+..+..++.+ . .+...++.+... ..|.-.. ....+.++++.|...+++.
T Consensus 274 -----~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~~~--~~~~~~~~l~~L~~~gli~ 346 (386)
T 2qby_A 274 -----RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVEAV--TQRRVSDIINELDMVGILT 346 (386)
T ss_dssp -----HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCCCC--CHHHHHHHHHHHHHHTSEE
T ss_pred -----hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHhCCCEE
Confidence 2345556677777777666655532 1 233433322211 1111000 1134566888999999997
Q ss_pred ee
Q 039180 407 VD 408 (790)
Q Consensus 407 ~~ 408 (790)
..
T Consensus 347 ~~ 348 (386)
T 2qby_A 347 AK 348 (386)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 155
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.87 E-value=9.8e-09 Score=102.68 Aligned_cols=173 Identities=12% Similarity=0.122 Sum_probs=100.3
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhC-----CCCchhHHHHHHHHHHHHH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLG-----LELSEEAEFRRASRMFERL 203 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-----~~~~~~~~~~~~~~l~~~l 203 (790)
+.+.|+|++|+||||+|+.+++.......+.. ........ ...+..... ...........+..+.+.+
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDN-CREIEQGRFVDLIEIDAASRTKVEDTRDLLDNV 118 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSHH-HHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccHH-HHHHhccCCcceEEecCcccccHHHHHHHHHHh
Confidence 58899999999999999999987643211100 00000000 000100000 0000001111222233322
Q ss_pred H----cCCcEEEEEeCCCCc--cCccccCccCCCCCCCcEEEEEeCChhHHh-h-hCCCceEEccCCCHHHHHHHHHHHh
Q 039180 204 K----NEKKILLILDNTWKS--LDLGTIGIPFGVEHRGCKLLFTTRDLDVLI-R-MGSEKNFSIGILNEQEAWRLFKIIA 275 (790)
Q Consensus 204 ~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtR~~~v~~-~-~~~~~~~~l~~L~~~~~~~Lf~~~~ 275 (790)
. .+++.+||+||++.. ..++.+...+.....+.++|+||+...... . ......+.+.+++.++..+++...+
T Consensus 119 ~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~ 198 (250)
T 1njg_A 119 QYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 198 (250)
T ss_dssp CCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred hhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHH
Confidence 1 246799999999654 334444444433455778899987643221 1 3334689999999999999998877
Q ss_pred CCCCCCcchHHHHHHHHHHhcCCcHHHHHHHHHH
Q 039180 276 GAYVENRELKSTATSVAKACRGLPIALTIVVKAL 309 (790)
Q Consensus 276 ~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l 309 (790)
..... .-..+..+.|++.++|.|..+..+...+
T Consensus 199 ~~~~~-~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 199 NEEHI-AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHTTC-CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 53221 1224567889999999999888776543
No 156
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.86 E-value=3.8e-09 Score=111.91 Aligned_cols=92 Identities=16% Similarity=0.092 Sum_probs=63.0
Q ss_pred CCCCCCCChhhhccCCceEEEEecC-ccccCCC-hhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCccc
Q 039180 486 SFLGPNIPENFFKGVKKLRVVALVK-MLLSSLP-SSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQL 563 (790)
Q Consensus 486 ~~~~~~lp~~~~~~l~~L~~L~L~~-~~~~~lp-~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~l 563 (790)
.+. .+|. +..+++|+.|+|++ |.+..+| ..|+.|.+|++|+|++|.++++.|..|++|++|++|+|++|.|+.+
T Consensus 20 ~l~--~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 95 (347)
T 2ifg_A 20 ALD--SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESL 95 (347)
T ss_dssp CCT--TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCC
T ss_pred CCC--ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcccee
Confidence 455 5666 46677777777775 7777664 4567777777777777777777666677777777777777777776
Q ss_pred chhhhcccccceecCCcc
Q 039180 564 PKALGELTKLRLSDLTDC 581 (790)
Q Consensus 564 p~~l~~l~~L~~L~l~~~ 581 (790)
|..+.....|+.|++.+|
T Consensus 96 ~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 96 SWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp CSTTTCSCCCCEEECCSS
T ss_pred CHHHcccCCceEEEeeCC
Confidence 665444334777777776
No 157
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.82 E-value=2.9e-08 Score=97.66 Aligned_cols=162 Identities=11% Similarity=0.091 Sum_probs=99.3
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCCcE
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEKKI 209 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~ 209 (790)
.+.|+|++|+|||++|+.+++.......-...+.++.+.......+...+........ ...+++.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~ 104 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAP---------------IGGAPFK 104 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSCC---------------STTCSCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhcccC---------------CCccCce
Confidence 3899999999999999999987643321122445555544443333222222111100 1124679
Q ss_pred EEEEeCCCCcc--CccccCccCCCCCCCcEEEEEeCChhHHh-h-hCCCceEEccCCCHHHHHHHHHHHhCCCCCCcchH
Q 039180 210 LLILDNTWKSL--DLGTIGIPFGVEHRGCKLLFTTRDLDVLI-R-MGSEKNFSIGILNEQEAWRLFKIIAGAYVENRELK 285 (790)
Q Consensus 210 LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR~~~v~~-~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~ 285 (790)
+||+||++... ..+.+...+.....+.++|+||+...... . ......+.+.+++.++..+++.+.+...... -.+
T Consensus 105 vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~-~~~ 183 (226)
T 2chg_A 105 IIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK-ITE 183 (226)
T ss_dssp EEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-BCH
T ss_pred EEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCC-CCH
Confidence 99999997652 23333333333345778899988753211 1 2334589999999999999998876421111 224
Q ss_pred HHHHHHHHHhcCCcHHHHHHHH
Q 039180 286 STATSVAKACRGLPIALTIVVK 307 (790)
Q Consensus 286 ~~~~~i~~~~~glPlai~~~~~ 307 (790)
+..+.+++.++|.|..+..+..
T Consensus 184 ~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 184 DGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHH
Confidence 5677899999999986554443
No 158
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.79 E-value=9.7e-10 Score=116.91 Aligned_cols=137 Identities=15% Similarity=0.086 Sum_probs=87.3
Q ss_pred CCceEEEEecCccccC--CChhhhhccccceeeccCccccccchhhhh-----ccCcccEEeccCCCCcc-----cchhh
Q 039180 500 VKKLRVVALVKMLLSS--LPSSIYLLVNLQTLCLDQSILRDIDIAIIG-----KLKNLKILSFVRSDIVQ-----LPKAL 567 (790)
Q Consensus 500 l~~L~~L~L~~~~~~~--lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~-----~l~~L~~L~L~~~~l~~-----lp~~l 567 (790)
.++|+.|+|++|.++. +......+.+|++|+|++|.++......++ ..++|++|+|++|.++. ++..+
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 3678888888887753 222334567788888888887665344443 35678888888887752 45556
Q ss_pred hcccccceecCCccccccccC----chhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCC
Q 039180 568 GELTKLRLSDLTDCFHLKVIA----PNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKND 643 (790)
Q Consensus 568 ~~l~~L~~L~l~~~~~l~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 643 (790)
..+++|++|++++| .++... ...+..+++|++|++++|.+.... .......+...++|+.|++++|.+
T Consensus 180 ~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g-------~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 180 AGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA-------ALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH-------HHHHHHHHHHCSSCCEEECTTSSC
T ss_pred hcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH-------HHHHHHHHHhCCCCCEEeccCCCC
Confidence 67778888888887 444322 223556677888888888764211 012234455567777777777764
Q ss_pred C
Q 039180 644 S 644 (790)
Q Consensus 644 ~ 644 (790)
+
T Consensus 252 ~ 252 (372)
T 3un9_A 252 S 252 (372)
T ss_dssp C
T ss_pred C
Confidence 3
No 159
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.79 E-value=5e-10 Score=119.11 Aligned_cols=136 Identities=12% Similarity=0.092 Sum_probs=70.2
Q ss_pred CCceEEEEecCccccCC-Chhhhhc-----cccceeeccCccccccchhhh-hccCcccEEeccCCCCccc-----chhh
Q 039180 500 VKKLRVVALVKMLLSSL-PSSIYLL-----VNLQTLCLDQSILRDIDIAII-GKLKNLKILSFVRSDIVQL-----PKAL 567 (790)
Q Consensus 500 l~~L~~L~L~~~~~~~l-p~~~~~l-----~~L~~L~L~~~~l~~l~p~~i-~~l~~L~~L~L~~~~l~~l-----p~~l 567 (790)
++.|+.|+|++|.++.. ...+..+ .+|++|+|++|.++......+ ..+++|++|+|++|.++.. ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 35677777777776532 2223222 567777777777654323333 2456677777777766521 1112
Q ss_pred -hcccccceecCCccccccccCc----hhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecC
Q 039180 568 -GELTKLRLSDLTDCFHLKVIAP----NVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKN 642 (790)
Q Consensus 568 -~~l~~L~~L~l~~~~~l~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 642 (790)
...++|++|++++| .++.... ..+..+++|++|++++|.+.... .......+..+++|+.|++++|.
T Consensus 151 ~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g-------~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 151 LHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEG-------LELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHH-------HHHHHHHGGGCSCCCEEECCSSC
T ss_pred HhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHH-------HHHHHHHHhcCCCcCeEECCCCC
Confidence 13456777777766 3433111 12345666667776666653110 01122334444555555555554
Q ss_pred C
Q 039180 643 D 643 (790)
Q Consensus 643 ~ 643 (790)
+
T Consensus 223 i 223 (372)
T 3un9_A 223 A 223 (372)
T ss_dssp C
T ss_pred C
Confidence 3
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.70 E-value=1.8e-08 Score=106.59 Aligned_cols=102 Identities=16% Similarity=0.214 Sum_probs=48.5
Q ss_pred EEeecc-cccCCCCccCccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCC-ChhhhhccccceeeccCc
Q 039180 457 ISLINS-RINDIPEGLESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSL-PSSIYLLVNLQTLCLDQS 534 (790)
Q Consensus 457 l~l~~~-~~~~l~~~~~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~~~ 534 (790)
+.++++ .+..+|......+++.|.+.++|.+. .+|...|.++++|+.|+|++|.++.+ |..|.+|++|++|+|++|
T Consensus 13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~--~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQ--HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCC--EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCC--CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 344444 45555551123334444433334444 44544455555555555555555544 334455555555555555
Q ss_pred cccccchhhhhccCcccEEeccCCCCc
Q 039180 535 ILRDIDIAIIGKLKNLKILSFVRSDIV 561 (790)
Q Consensus 535 ~l~~l~p~~i~~l~~L~~L~L~~~~l~ 561 (790)
.++.+.+..+..+. |++|+|.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 55555222333333 555555555444
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.59 E-value=4.9e-07 Score=97.28 Aligned_cols=271 Identities=14% Similarity=0.071 Sum_probs=132.9
Q ss_pred CccccceeecccCCCCCCCCCChhhhccCCceEEEEecCccccCC-ChhhhhccccceeeccCc----------------
Q 039180 472 ESAQLEFLLMIPNNSFLGPNIPENFFKGVKKLRVVALVKMLLSSL-PSSIYLLVNLQTLCLDQS---------------- 534 (790)
Q Consensus 472 ~~~~l~~l~~~~~~~~~~~~lp~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~~~---------------- 534 (790)
.+.++.++.+-+ ... .|+...|.+|.+|+.+++..+ ++.+ ...|.++.+|+.+.+..+
T Consensus 69 ~c~~L~~i~lp~--~i~--~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 69 GCRKVTEIKIPS--TVR--EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKE 143 (394)
T ss_dssp TCTTEEEEECCT--TCC--EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSE
T ss_pred CCCCceEEEeCC--Ccc--CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccc
Confidence 344555554421 122 456666667777777766543 3333 234445555555444322
Q ss_pred -----cccccchhhhhccCcccEEeccCCCCcccc-hhhhcccccceecCCccccccccCchhhccccccceEecccCCc
Q 039180 535 -----ILRDIDIAIIGKLKNLKILSFVRSDIVQLP-KALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPI 608 (790)
Q Consensus 535 -----~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 608 (790)
.+..+....|.++.+|+.+.+..+ +..++ ..+..+.+|+.+.+..+ ++.++...+.++..|+.+.+..+..
T Consensus 144 ~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~~ 220 (394)
T 4fs7_A 144 ITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSLY 220 (394)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTCC
T ss_pred cccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCce
Confidence 111122345667777777777654 33333 33566777777777663 5556666677777777776654322
Q ss_pred cchhhccc----------ccccccccccccCCCCCcEEEEEecCCCCCCccc--cccccceeEEEecCCCCCCCccccCC
Q 039180 609 EWEVERAN----------SERSNSSLDELMNLPWLTTLEIDVKNDSILPESF--LTQKLERFKISIGNESFMPSQSVELP 676 (790)
Q Consensus 609 ~~~~~~~~----------~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~l~ 676 (790)
........ .....-....+..+..|+.+.+..+... +.... .+..++.+......+ ....+..+.
T Consensus 221 ~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i--~~~~F~~~~ 297 (394)
T 4fs7_A 221 YLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV--PEKTFYGCS 297 (394)
T ss_dssp EECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE--CTTTTTTCT
T ss_pred EeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee--ccccccccc
Confidence 10000000 0000000112223344444444322111 11100 133333333222110 111344566
Q ss_pred ccCeeeccceecceecccCCCccccccCCCccEEeeccCCcccccchhHHHhccccccEEeeccCchhhhHhhcCCCCCC
Q 039180 677 NLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFELLRELSIADCRGLREIISKDRADHV 756 (790)
Q Consensus 677 ~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 756 (790)
+|+.+.+..+ ++.+ ....+.+|++|+.++|.++ ++.+.. ..+.+|.+|+.+.+.. .++.+......
T Consensus 298 ~L~~i~l~~~-i~~I-----~~~aF~~c~~L~~i~lp~~--v~~I~~-~aF~~c~~L~~i~lp~--~l~~I~~~aF~--- 363 (394)
T 4fs7_A 298 SLTEVKLLDS-VKFI-----GEEAFESCTSLVSIDLPYL--VEEIGK-RSFRGCTSLSNINFPL--SLRKIGANAFQ--- 363 (394)
T ss_dssp TCCEEEECTT-CCEE-----CTTTTTTCTTCCEECCCTT--CCEECT-TTTTTCTTCCEECCCT--TCCEECTTTBT---
T ss_pred cccccccccc-ccee-----chhhhcCCCCCCEEEeCCc--ccEEhH-HhccCCCCCCEEEECc--cccEehHHHhh---
Confidence 7777777554 4433 1334677888888888643 566643 4567888888888764 25555443222
Q ss_pred CCcccCCccceeecc
Q 039180 757 TPCFVFPQMTTLRLE 771 (790)
Q Consensus 757 ~~~~~~p~L~~L~l~ 771 (790)
.|++|+.++|.
T Consensus 364 ----~C~~L~~i~lp 374 (394)
T 4fs7_A 364 ----GCINLKKVELP 374 (394)
T ss_dssp ----TCTTCCEEEEE
T ss_pred ----CCCCCCEEEEC
Confidence 46777777653
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.55 E-value=8e-07 Score=95.64 Aligned_cols=227 Identities=16% Similarity=0.107 Sum_probs=136.8
Q ss_pred CChhhhccCCceEEEEecCccccCC-ChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhhhcc
Q 039180 492 IPENFFKGVKKLRVVALVKMLLSSL-PSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGEL 570 (790)
Q Consensus 492 lp~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l 570 (790)
+....|.++++|+.+.+.++. ..+ ...|.++.+|+.+.+..+ ++.+....+.++..|+.+.+..+. ..+.......
T Consensus 153 i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~-~~i~~~~~~~ 229 (394)
T 4fs7_A 153 IGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL-YYLGDFALSK 229 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC-CEECTTTTTT
T ss_pred cchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc-eEeehhhccc
Confidence 334456666667776665442 223 344556666776666544 444435556666666666665542 2222333344
Q ss_pred cccceecCCccccccccCchhhccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEEecCCCCCCccc
Q 039180 571 TKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKNDSILPESF 650 (790)
Q Consensus 571 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 650 (790)
.+|+.+.+.. .+..+....+..+..|+.+.+..+... -....+..+..++.+.......... ...
T Consensus 230 ~~l~~i~ip~--~~~~i~~~~f~~~~~l~~~~~~~~~~~------------i~~~~F~~~~~l~~~~~~~~~i~~~-~F~ 294 (394)
T 4fs7_A 230 TGVKNIIIPD--SFTELGKSVFYGCTDLESISIQNNKLR------------IGGSLFYNCSGLKKVIYGSVIVPEK-TFY 294 (394)
T ss_dssp CCCCEEEECT--TCCEECSSTTTTCSSCCEEEECCTTCE------------ECSCTTTTCTTCCEEEECSSEECTT-TTT
T ss_pred CCCceEEECC--CceecccccccccccceeEEcCCCcce------------eeccccccccccceeccCceeeccc-ccc
Confidence 5666666654 234455555677888888877655321 1223456677777776643321111 112
Q ss_pred cccccceeEEEecCCCCCCC-ccccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCCcccccchhHHHhc
Q 039180 651 LTQKLERFKISIGNESFMPS-QSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQN 729 (790)
Q Consensus 651 ~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 729 (790)
.+.+|+.+.+..+ +..+.. .+..+++|+.+.|..+ ++.+ ....+.+|.+|+.+.|..+ ++.+.. ..+.+
T Consensus 295 ~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I-----~~~aF~~c~~L~~i~lp~~--l~~I~~-~aF~~ 364 (394)
T 4fs7_A 295 GCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEI-----GKRSFRGCTSLSNINFPLS--LRKIGA-NAFQG 364 (394)
T ss_dssp TCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEE-----CTTTTTTCTTCCEECCCTT--CCEECT-TTBTT
T ss_pred ccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEE-----hHHhccCCCCCCEEEECcc--ccEehH-HHhhC
Confidence 3778888888654 333333 6677899999999754 5555 2344788999999999765 677653 56889
Q ss_pred cccccEEeeccCchhhhHh
Q 039180 730 FELLRELSIADCRGLREII 748 (790)
Q Consensus 730 l~~L~~L~l~~c~~l~~~~ 748 (790)
|++|+.+.+.. .++.+.
T Consensus 365 C~~L~~i~lp~--~~~~~~ 381 (394)
T 4fs7_A 365 CINLKKVELPK--RLEQYR 381 (394)
T ss_dssp CTTCCEEEEEG--GGGGGG
T ss_pred CCCCCEEEECC--CCEEhh
Confidence 99999999975 344443
No 163
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.53 E-value=6.3e-08 Score=89.24 Aligned_cols=92 Identities=14% Similarity=0.166 Sum_probs=68.9
Q ss_pred CccCeeeccceecceecccCCCccccccCCCccEEeeccCCcccccchhHHHhc----cccccEEeeccCchhhhHhhcC
Q 039180 676 PNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQN----FELLRELSIADCRGLREIISKD 751 (790)
Q Consensus 676 ~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~----l~~L~~L~l~~c~~l~~~~~~~ 751 (790)
.+|++|++++|.+++. +. ..+..+++|+.|+|++|..+++... ..+.. +++|++|+|++|+.+++-....
T Consensus 61 ~~L~~LDLs~~~Itd~---GL--~~L~~~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~ 134 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSI---GF--DHMEGLQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSMLEMEIISCGNVTDKGIIA 134 (176)
T ss_dssp CCEEEEEEESCCCCGG---GG--GGGTTCSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred ceEeEEeCcCCCccHH---HH--HHhcCCCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCCEEEcCCCCcCCHHHHHH
Confidence 4688888888877653 21 2257899999999999988888643 23333 4689999999999888766543
Q ss_pred CCCCCCCcccCCccceeeccccccccccC
Q 039180 752 RADHVTPCFVFPQMTTLRLEILPELKCYT 780 (790)
Q Consensus 752 ~~~~~~~~~~~p~L~~L~l~~c~~L~~l~ 780 (790)
.. .+|+|++|+|++||+++...
T Consensus 135 L~-------~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 135 LH-------HFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp GG-------GCTTCCEEEEESCTTCCCHH
T ss_pred Hh-------cCCCCCEEECCCCCCCCchH
Confidence 32 58999999999999988753
No 164
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.51 E-value=3.4e-07 Score=95.70 Aligned_cols=163 Identities=13% Similarity=0.116 Sum_probs=97.2
Q ss_pred EEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCCcEE
Q 039180 131 IGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEKKIL 210 (790)
Q Consensus 131 v~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~L 210 (790)
+.++|++|+||||+|+.+++..........+++++.++......+ +++++.+.... ..+..+++.+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~-------------~~~~~~~~~v 110 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQIKHFAQKK-------------LHLPPGKHKI 110 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTHHHHHHHBC-------------CCCCTTCCEE
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHHHHHHHhcc-------------ccCCCCCceE
Confidence 899999999999999999988633211112445554443332222 12222111000 0000245899
Q ss_pred EEEeCCCCc--cCccccCccCCCCCCCcEEEEEeCChhH-Hhh-hCCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHH
Q 039180 211 LILDNTWKS--LDLGTIGIPFGVEHRGCKLLFTTRDLDV-LIR-MGSEKNFSIGILNEQEAWRLFKIIAGAYVENRELKS 286 (790)
Q Consensus 211 lVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtR~~~v-~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~ 286 (790)
+|+||++.. ..++.+...+.....++++|+||+...- ... ......+.+.+++.++..+++...+...... -.++
T Consensus 111 iiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~-~~~~ 189 (323)
T 1sxj_B 111 VILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVK-YTND 189 (323)
T ss_dssp EEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-BCHH
T ss_pred EEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCC-CCHH
Confidence 999999764 2333443333334456788888876432 111 3445689999999999999998876421111 2245
Q ss_pred HHHHHHHHhcCCcHH-HHHHHHH
Q 039180 287 TATSVAKACRGLPIA-LTIVVKA 308 (790)
Q Consensus 287 ~~~~i~~~~~glPla-i~~~~~~ 308 (790)
..+.|++.++|.|.. +..+...
T Consensus 190 ~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 190 GLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHH
Confidence 678899999999954 4444433
No 165
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.33 E-value=3.4e-07 Score=96.31 Aligned_cols=46 Identities=20% Similarity=0.163 Sum_probs=30.3
Q ss_pred cCCccCeeeccceecceecccCCCccccccCCCccEEeeccCCccccc
Q 039180 674 ELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYI 721 (790)
Q Consensus 674 ~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~ 721 (790)
.+|+|++|+|+.|.+.+... ...+..+..+++|+.|+|++| .+++.
T Consensus 277 ~~~~L~~LdLs~n~L~d~G~-~~L~~~L~~l~~L~~L~L~~n-~i~d~ 322 (362)
T 2ra8_A 277 ILPQLETMDISAGVLTDEGA-RLLLDHVDKIKHLKFINMKYN-YLSDE 322 (362)
T ss_dssp SGGGCSEEECCSSCCBHHHH-HHHHTTHHHHTTCSEEECCSB-BCCHH
T ss_pred cCCCCCEEECCCCCCChHHH-HHHHhhcccCCcceEEECCCC-cCCHH
Confidence 46889999998887765210 011222356889999999988 45543
No 166
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.33 E-value=1.4e-06 Score=91.05 Aligned_cols=151 Identities=15% Similarity=0.072 Sum_probs=89.8
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHc--C
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKN--E 206 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~--~ 206 (790)
..|.|+|++|+|||++|+.+++.... ..++++.+......++.. .+.. .
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~~-----~~~~~~~~~~~~~~~l~~------------------------~l~~~~~ 89 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELGV-----NLRVTSGPAIEKPGDLAA------------------------ILANSLE 89 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHTC-----CEEEECTTTCCSHHHHHH------------------------HHTTTCC
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEeccccCChHHHHH------------------------HHHHhcc
Confidence 56889999999999999999987631 234555444333222211 1111 3
Q ss_pred CcEEEEEeCCCCcc--CccccCccCCC------------------CCCCcEEEEEeCChh-HHhh-hCC-CceEEccCCC
Q 039180 207 KKILLILDNTWKSL--DLGTIGIPFGV------------------EHRGCKLLFTTRDLD-VLIR-MGS-EKNFSIGILN 263 (790)
Q Consensus 207 kr~LlVlDdv~~~~--~~~~l~~~~~~------------------~~~gs~iliTtR~~~-v~~~-~~~-~~~~~l~~L~ 263 (790)
+..+|++||+.... ....+...+.. .....++|.||.... +... ... ...+.+.+++
T Consensus 90 ~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~ 169 (324)
T 1hqc_A 90 EGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYT 169 (324)
T ss_dssp TTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCC
T ss_pred CCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCC
Confidence 45688889887652 11111000000 012355777666432 1111 122 2589999999
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHHHHHHHHHH
Q 039180 264 EQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIALTIVVKAL 309 (790)
Q Consensus 264 ~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l 309 (790)
.++..+++.+.+..... .-..+..+.+++.++|.|..+..+...+
T Consensus 170 ~~e~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 170 PEELAQGVMRDARLLGV-RITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp HHHHHHHHHHHHHTTTC-CCCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 99999999887753222 1224667889999999998877666544
No 167
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.32 E-value=4.6e-06 Score=89.61 Aligned_cols=88 Identities=15% Similarity=0.222 Sum_probs=49.8
Q ss_pred CCChhhhccCCceEEEEecCcc---ccCC-ChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccc-h
Q 039180 491 NIPENFFKGVKKLRVVALVKML---LSSL-PSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLP-K 565 (790)
Q Consensus 491 ~lp~~~~~~l~~L~~L~L~~~~---~~~l-p~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp-~ 565 (790)
.|....|.+|.+|+.+.+..+. ++.+ ...|..+.+|+.+.+..+ ++.+....+..+.+|+.+.+..+ +..++ .
T Consensus 77 ~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~ 154 (394)
T 4gt6_A 77 EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADG 154 (394)
T ss_dssp EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeeccc
Confidence 4666667777777777776553 4444 334556666766665443 34443455666677777776543 22222 2
Q ss_pred hhhcccccceecCCc
Q 039180 566 ALGELTKLRLSDLTD 580 (790)
Q Consensus 566 ~l~~l~~L~~L~l~~ 580 (790)
.+..+.+|+.+.+..
T Consensus 155 ~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 155 MFSYCYSLHTVTLPD 169 (394)
T ss_dssp TTTTCTTCCEEECCT
T ss_pred ceecccccccccccc
Confidence 344555566665544
No 168
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.30 E-value=1.5e-05 Score=81.32 Aligned_cols=149 Identities=7% Similarity=0.051 Sum_probs=91.8
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccC---C-C-EEEEEEeCCCCCHHHHHHHHHHHhCCCCch-hHHHHHHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDEL---Y-D-MVVFSEVTQSPDIKQIQQEIAEKLGLELSE-EAEFRRASRMF 200 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~---f-~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~ 200 (790)
..+.+.|+|++|+|||++++.+++....... . . ..+.+++....+...++..|++++...... ......+..++
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f 123 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYI 123 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence 4678899999999999999999998754211 1 1 367788888889999999999999643211 11123344555
Q ss_pred HHH--HcCCcEEEEEeCCCCccCccccCccCCC-CCCCc--EEEEEeCChhH----H-----hhhCCCceEEccCCCHHH
Q 039180 201 ERL--KNEKKILLILDNTWKSLDLGTIGIPFGV-EHRGC--KLLFTTRDLDV----L-----IRMGSEKNFSIGILNEQE 266 (790)
Q Consensus 201 ~~l--~~~kr~LlVlDdv~~~~~~~~l~~~~~~-~~~gs--~iliTtR~~~v----~-----~~~~~~~~~~l~~L~~~~ 266 (790)
..+ ..+++++++||+++...+-+.+...+.+ ....+ .||.++...+. . ..+. ...+.+.+++.++
T Consensus 124 ~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~-~~~i~F~pYt~~e 202 (318)
T 3te6_A 124 TNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAH-FTEIKLNKVDKNE 202 (318)
T ss_dssp HHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTT-EEEEECCCCCHHH
T ss_pred HHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCC-ceEEEeCCCCHHH
Confidence 554 2357899999999776422222111110 01222 23333433211 1 1121 2479999999999
Q ss_pred HHHHHHHHhC
Q 039180 267 AWRLFKIIAG 276 (790)
Q Consensus 267 ~~~Lf~~~~~ 276 (790)
-.+++.+++.
T Consensus 203 l~~Il~~Rl~ 212 (318)
T 3te6_A 203 LQQMIITRLK 212 (318)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988774
No 169
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.28 E-value=1.2e-06 Score=91.69 Aligned_cols=161 Identities=12% Similarity=0.084 Sum_probs=94.4
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHH--HHcCC
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFER--LKNEK 207 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~--l~~~k 207 (790)
.+.++|++|+||||+|+.+++.......-...+.++.++......+ +.. +...... +..++
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~----------------~~~~~~~~~~~~~~ 110 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVI-REK----------------VKEFARTKPIGGAS 110 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTT-HHH----------------HHHHHHSCCGGGCS
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHH-HHH----------------HHHHHhhCCcCCCC
Confidence 4899999999999999999988532211111334443321111100 000 0011000 11246
Q ss_pred cEEEEEeCCCCc--cCccccCccCCCCCCCcEEEEEeCChhH-Hhh-hCCCceEEccCCCHHHHHHHHHHHhCCCCCCcc
Q 039180 208 KILLILDNTWKS--LDLGTIGIPFGVEHRGCKLLFTTRDLDV-LIR-MGSEKNFSIGILNEQEAWRLFKIIAGAYVENRE 283 (790)
Q Consensus 208 r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtR~~~v-~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~ 283 (790)
+.++|+||++.. ...+.+...+.....++++|+||..... ... ......+.+.+++.++..+++...+..... .-
T Consensus 111 ~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~ 189 (327)
T 1iqp_A 111 FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL-EL 189 (327)
T ss_dssp CEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTC-EE
T ss_pred CeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCC-CC
Confidence 789999999765 2333343333333457788888876432 111 223348899999999999999887643221 12
Q ss_pred hHHHHHHHHHHhcCCcHHHHHHHHH
Q 039180 284 LKSTATSVAKACRGLPIALTIVVKA 308 (790)
Q Consensus 284 ~~~~~~~i~~~~~glPlai~~~~~~ 308 (790)
..+..+.|++.++|.|..+..+...
T Consensus 190 ~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 190 TEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp CHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 2456788999999999865554443
No 170
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.24 E-value=5.6e-07 Score=82.93 Aligned_cols=93 Identities=15% Similarity=0.195 Sum_probs=57.9
Q ss_pred CChhhhccCCceEEEEecCccccCC-ChhhhhccccceeeccCcc-ccccchhhhhcc----CcccEEeccCC-CCc--c
Q 039180 492 IPENFFKGVKKLRVVALVKMLLSSL-PSSIYLLVNLQTLCLDQSI-LRDIDIAIIGKL----KNLKILSFVRS-DIV--Q 562 (790)
Q Consensus 492 lp~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~~~~-l~~l~p~~i~~l----~~L~~L~L~~~-~l~--~ 562 (790)
+|.... .-..|+.||+++|.++.. ...+..+++|++|+|++|. +++.....++.+ ++|++|+|++| +|+ .
T Consensus 53 LP~~~~-~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 53 LPTGPL-DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp SCCCST-TCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred CCcccC-CCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 554332 234688888888877632 3455677778888887775 665445555553 35777777776 465 2
Q ss_pred cchhhhcccccceecCCccccccc
Q 039180 563 LPKALGELTKLRLSDLTDCFHLKV 586 (790)
Q Consensus 563 lp~~l~~l~~L~~L~l~~~~~l~~ 586 (790)
+ ..+.++++|++|++++|..++.
T Consensus 132 l-~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 132 I-IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp H-HHGGGCTTCCEEEEESCTTCCC
T ss_pred H-HHHhcCCCCCEEECCCCCCCCc
Confidence 2 2355667777777777755554
No 171
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.20 E-value=1.4e-06 Score=91.73 Aligned_cols=138 Identities=17% Similarity=0.138 Sum_probs=80.4
Q ss_pred hhhccCCceEEEEecCccccCCChhhhhccccceeeccCccccccchhhhh--ccCcccEEeccCC--C------Ccccc
Q 039180 495 NFFKGVKKLRVVALVKMLLSSLPSSIYLLVNLQTLCLDQSILRDIDIAIIG--KLKNLKILSFVRS--D------IVQLP 564 (790)
Q Consensus 495 ~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~--~l~~L~~L~L~~~--~------l~~lp 564 (790)
.++..+|+|+.|+|+++.-..++. + .+++|++|+|..|.++......++ .+++|++|+|+.+ . +..+.
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 455778888888888773234443 3 377888888888877654344454 6788888887531 1 21222
Q ss_pred hhh--hcccccceecCCccccccccCchhh---ccccccceEecccCCccchhhcccccccccccccccCCCCCcEEEEE
Q 039180 565 KAL--GELTKLRLSDLTDCFHLKVIAPNVI---SSLTRLEELYMGNCPIEWEVERANSERSNSSLDELMNLPWLTTLEID 639 (790)
Q Consensus 565 ~~l--~~l~~L~~L~l~~~~~l~~~~~~~l---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 639 (790)
..+ ..+++|++|++.+|......+.. + ..+++|++|+++.|.+.... ....+..+.++++|+.|+++
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~-la~a~~~~~L~~LdLs~n~L~d~G-------~~~L~~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEM-FLESDILPQLETMDISAGVLTDEG-------ARLLLDHVDKIKHLKFINMK 315 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHH-HHHCSSGGGCSEEECCSSCCBHHH-------HHHHHTTHHHHTTCSEEECC
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHH-HHhCccCCCCCEEECCCCCCChHH-------HHHHHhhcccCCcceEEECC
Confidence 222 24677888888776322211111 2 24677888888777653110 01123334556777777776
Q ss_pred ecC
Q 039180 640 VKN 642 (790)
Q Consensus 640 ~~~ 642 (790)
.|.
T Consensus 316 ~n~ 318 (362)
T 2ra8_A 316 YNY 318 (362)
T ss_dssp SBB
T ss_pred CCc
Confidence 664
No 172
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.20 E-value=1.2e-05 Score=86.39 Aligned_cols=112 Identities=13% Similarity=0.178 Sum_probs=66.2
Q ss_pred ccccceeEEEecCCCCCCCccccCCccCeeeccceecceecccCCCccccccCCCccEEeeccCCcccccchhHHHhccc
Q 039180 652 TQKLERFKISIGNESFMPSQSVELPNLEALELCAINVDKIWHYNLLPFMLSRFQSLTRLIVRSCPKLKYIFSASMIQNFE 731 (790)
Q Consensus 652 ~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~ 731 (790)
+.+|+.+.+..+........+..+++|+.+.+.. .++.+ ....+.+|.+|+.+.|..+ ++.+.. ..+.+|.
T Consensus 264 c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~I-----~~~aF~~c~~L~~i~lp~~--v~~I~~-~aF~~C~ 334 (394)
T 4gt6_A 264 CAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RITEL-----PESVFAGCISLKSIDIPEG--ITQILD-DAFAGCE 334 (394)
T ss_dssp CSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEE-----CTTTTTTCTTCCEEECCTT--CCEECT-TTTTTCT
T ss_pred cccccEEecccccceecCcccccccccccccCCC-ccccc-----CceeecCCCCcCEEEeCCc--ccEehH-hHhhCCC
Confidence 4566666654333222222455677777777753 34443 2344778888999988754 666643 4678889
Q ss_pred cccEEeeccCchhhhHhhcCCCCCCCCcccCCccceeecc----------ccccccccCh
Q 039180 732 LLRELSIADCRGLREIISKDRADHVTPCFVFPQMTTLRLE----------ILPELKCYTL 781 (790)
Q Consensus 732 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~----------~c~~L~~l~~ 781 (790)
+|+.+.|.. .++.+...... .|++|+.+++. .|.+|+.+.+
T Consensus 335 ~L~~i~ip~--sv~~I~~~aF~-------~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i 385 (394)
T 4gt6_A 335 QLERIAIPS--SVTKIPESAFS-------NCTALNNIEYSGSRSQWNAISTDSGLQNLPV 385 (394)
T ss_dssp TCCEEEECT--TCCBCCGGGGT-------TCTTCCEEEESSCHHHHHTCBCCCCC-----
T ss_pred CCCEEEECc--ccCEEhHhHhh-------CCCCCCEEEECCceeehhhhhccCCCCEEEe
Confidence 999998864 35555443222 47888888765 4666776654
No 173
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.18 E-value=3.3e-05 Score=78.19 Aligned_cols=175 Identities=16% Similarity=0.200 Sum_probs=95.2
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcC
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNE 206 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 206 (790)
..+-+.|+|++|+|||++|+.+++... ... +.++.+... .+ .........+..+++.....
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~----~~~-~~i~~~~~~------------~g--~~~~~~~~~~~~~~~~~~~~ 123 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESN----FPF-IKICSPDKM------------IG--FSETAKCQAMKKIFDDAYKS 123 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHT----CSE-EEEECGGGC------------TT--CCHHHHHHHHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhC----CCE-EEEeCHHHh------------cC--CchHHHHHHHHHHHHHHHhc
Confidence 357889999999999999999998742 222 223322100 11 11111222334445544445
Q ss_pred CcEEEEEeCCCCcc------------CccccCccCC---CCCCCcEEEEEeCChhHHhh---hCC-CceEEccCCCH-HH
Q 039180 207 KKILLILDNTWKSL------------DLGTIGIPFG---VEHRGCKLLFTTRDLDVLIR---MGS-EKNFSIGILNE-QE 266 (790)
Q Consensus 207 kr~LlVlDdv~~~~------------~~~~l~~~~~---~~~~gs~iliTtR~~~v~~~---~~~-~~~~~l~~L~~-~~ 266 (790)
+..+|++||++... ....+...+. .......||.||........ ... ...+.+.+++. ++
T Consensus 124 ~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~ 203 (272)
T 1d2n_A 124 QLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQ 203 (272)
T ss_dssp SEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHH
T ss_pred CCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHH
Confidence 67999999986430 0111211111 12223456777877654443 222 35788998987 66
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHHhcC------CcHHHHHHHHHHhcCChhHHHHHHHHhcC
Q 039180 267 AWRLFKIIAGAYVENRELKSTATSVAKACRG------LPIALTIVVKALRNKELPEWKNALQELQM 326 (790)
Q Consensus 267 ~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~g------lPlai~~~~~~l~~~~~~~w~~~l~~l~~ 326 (790)
..+++.+... -..+....|++.+.| ++.++..+-.+-.......++.+++.+..
T Consensus 204 i~~i~~~~~~------~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~~~~~~~~~~~~l~~ 263 (272)
T 1d2n_A 204 LLEALELLGN------FKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLRE 263 (272)
T ss_dssp HHHHHHHHTC------SCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSCGGGHHHHHHHHHHH
T ss_pred HHHHHHhcCC------CCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Confidence 6666655321 124557788888887 33444444333332344566666665543
No 174
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.16 E-value=1.2e-06 Score=82.86 Aligned_cols=112 Identities=15% Similarity=0.048 Sum_probs=76.7
Q ss_pred hhccCCceEEEEecCc-ccc-----CCChhhhhccccceeeccCccccccc----hhhhhccCcccEEeccCCCCcc---
Q 039180 496 FFKGVKKLRVVALVKM-LLS-----SLPSSIYLLVNLQTLCLDQSILRDID----IAIIGKLKNLKILSFVRSDIVQ--- 562 (790)
Q Consensus 496 ~~~~l~~L~~L~L~~~-~~~-----~lp~~~~~l~~L~~L~L~~~~l~~l~----p~~i~~l~~L~~L~L~~~~l~~--- 562 (790)
.+...+.|+.|+|++| .+. .+...+...++|++|+|++|.+.... ...+...++|++|+|++|.|..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 4567788999999888 775 24555666788888999888876532 2334455788888888887762
Q ss_pred --cchhhhcccccceecC--CccccccccC----chhhccccccceEecccCCc
Q 039180 563 --LPKALGELTKLRLSDL--TDCFHLKVIA----PNVISSLTRLEELYMGNCPI 608 (790)
Q Consensus 563 --lp~~l~~l~~L~~L~l--~~~~~l~~~~----~~~l~~l~~L~~L~l~~~~~ 608 (790)
+...+...+.|++|++ ++| .++... ...+...++|++|++++|.+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 4556667778888888 555 444321 12244557788888877765
No 175
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.12 E-value=1.3e-05 Score=83.23 Aligned_cols=159 Identities=9% Similarity=0.086 Sum_probs=94.3
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHH--HHcCC
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFER--LKNEK 207 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~--l~~~k 207 (790)
.+.++|++|+|||++|+.+++.......-...+.++.+.......+.. .+...... +..++
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~ 102 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRH-----------------KIKEFARTAPIGGAP 102 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSH-----------------HHHHHHHSCCSSSCC
T ss_pred eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHH-----------------HHHHHHhcCCCCCCC
Confidence 389999999999999999998753221001123344443211111000 00111100 11246
Q ss_pred cEEEEEeCCCCc--cCccccCccCCCCCCCcEEEEEeCChh-HHhh-hCCCceEEccCCCHHHHHHHHHHHhCCCCCCcc
Q 039180 208 KILLILDNTWKS--LDLGTIGIPFGVEHRGCKLLFTTRDLD-VLIR-MGSEKNFSIGILNEQEAWRLFKIIAGAYVENRE 283 (790)
Q Consensus 208 r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~ 283 (790)
+.++|+||++.. ...+.+...+.....+.++|+||.... +... ......+.+.+++.++..+++...+...... -
T Consensus 103 ~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~-i 181 (319)
T 2chq_A 103 FKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK-I 181 (319)
T ss_dssp CEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCC-B
T ss_pred ceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCC-C
Confidence 789999999765 233444444444445678888887643 2111 3344689999999999999998876532221 2
Q ss_pred hHHHHHHHHHHhcCCcHHHHHHH
Q 039180 284 LKSTATSVAKACRGLPIALTIVV 306 (790)
Q Consensus 284 ~~~~~~~i~~~~~glPlai~~~~ 306 (790)
..+..+.+++.++|.+..+....
T Consensus 182 ~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 182 TEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp CHHHHHHHHHTTTTCHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHH
Confidence 24567788899999987654443
No 176
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.08 E-value=1.3e-05 Score=85.41 Aligned_cols=156 Identities=11% Similarity=0.133 Sum_probs=93.0
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCC-------------------EEEEEEeCCCCCHHHHHHHHHHHhCCCCch
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYD-------------------MVVFSEVTQSPDIKQIQQEIAEKLGLELSE 189 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~-------------------~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 189 (790)
+.+.|+|+.|+||||+|+.++........+. ..+.+..+....
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 100 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTK------------------ 100 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTCSCC------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccccCC------------------
Confidence 5788999999999999999998764321110 011221111000
Q ss_pred hHHHHHHHHHHHHHH----cCCcEEEEEeCCCCc--cCccccCccCCCCCCCcEEEEEeCChh-HHhh-hCCCceEEccC
Q 039180 190 EAEFRRASRMFERLK----NEKKILLILDNTWKS--LDLGTIGIPFGVEHRGCKLLFTTRDLD-VLIR-MGSEKNFSIGI 261 (790)
Q Consensus 190 ~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtR~~~-v~~~-~~~~~~~~l~~ 261 (790)
.+.+..+.+.+. .+++.++|+||++.. ...+.+...+.....+..+|++|.... +... ......+.+.+
T Consensus 101 ---~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~ 177 (373)
T 1jr3_A 101 ---VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 (373)
T ss_dssp ---SSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred ---HHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCC
Confidence 011222333322 246789999999654 223333333333344667777776543 1111 33457899999
Q ss_pred CCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHHHHHHH
Q 039180 262 LNEQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIALTIVV 306 (790)
Q Consensus 262 L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~ 306 (790)
++.++..+++.+.+..... ....+....|++.++|.|..+..+.
T Consensus 178 l~~~~~~~~l~~~~~~~~~-~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 178 LDVEQIRHQLEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp CCHHHHHHHHHHHHHHHTC-CBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 9999999999876642111 1124567789999999998776554
No 177
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.03 E-value=7.4e-05 Score=75.05 Aligned_cols=159 Identities=14% Similarity=0.111 Sum_probs=88.8
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
.+-|.++|++|+|||++|+.+++.... ..+.++.+.-.+ .... .....+..+++......
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~~-----~~~~~~~~~~~~--------------~~~~-~~~~~~~~~~~~a~~~~ 98 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQV-----PFLAMAGAEFVE--------------VIGG-LGAARVRSLFKEARARA 98 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTC-----CEEEEETTTTSS--------------SSTT-HHHHHHHHHHHHHHHTC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEechHHHHh--------------hccC-hhHHHHHHHHHHHHhcC
Confidence 456889999999999999999987632 134455443211 0011 11223344555554446
Q ss_pred cEEEEEeCCCCcc-------------Cc----cccCccCCC--CCCCcEEEEEeCChhHHhh--hC---CCceEEccCCC
Q 039180 208 KILLILDNTWKSL-------------DL----GTIGIPFGV--EHRGCKLLFTTRDLDVLIR--MG---SEKNFSIGILN 263 (790)
Q Consensus 208 r~LlVlDdv~~~~-------------~~----~~l~~~~~~--~~~gs~iliTtR~~~v~~~--~~---~~~~~~l~~L~ 263 (790)
..+|++||++... .. ..+...+.. ...+..||.||........ .. ....+.+...+
T Consensus 99 ~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~ 178 (262)
T 2qz4_A 99 PCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPT 178 (262)
T ss_dssp SEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCC
T ss_pred CeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcC
Confidence 7999999997641 00 111111111 1234567777765432221 11 23578899999
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcH-HHHHHH
Q 039180 264 EQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPI-ALTIVV 306 (790)
Q Consensus 264 ~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~~ 306 (790)
.++-.+++...+...............+++.+.|.+- .+..+.
T Consensus 179 ~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~ 222 (262)
T 2qz4_A 179 LQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANIC 222 (262)
T ss_dssp HHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHH
Confidence 9999999988775322222223345678888888754 444433
No 178
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.94 E-value=2.9e-06 Score=84.46 Aligned_cols=59 Identities=27% Similarity=0.307 Sum_probs=25.4
Q ss_pred hccccceeeccCccccccc--hhhhhccCcccEEeccCCCCcccchhhhccc--ccceecCCcc
Q 039180 522 LLVNLQTLCLDQSILRDID--IAIIGKLKNLKILSFVRSDIVQLPKALGELT--KLRLSDLTDC 581 (790)
Q Consensus 522 ~l~~L~~L~L~~~~l~~l~--p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~--~L~~L~l~~~ 581 (790)
++++|+.|+|++|.++++. |..++.+++|++|+|++|.|+.+. .+..++ +|++|++++|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~N 230 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGN 230 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCC
Confidence 3444555555555444421 233344455555555555444331 122232 4444444444
No 179
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.94 E-value=3.3e-06 Score=83.85 Aligned_cols=151 Identities=15% Similarity=0.081 Sum_probs=90.4
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
.+.+.|+|++|+||||+|+.+++..... ...+.|++++..... + . ...+.+ .+
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~~~~~------~--------~---------~~~~~~--~~ 104 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGIHASI------S--------T---------ALLEGL--EQ 104 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGGGS------C--------G---------GGGTTG--GG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHH------H--------H---------HHHHhc--cC
Confidence 4678999999999999999999887543 234667776542110 0 0 000111 24
Q ss_pred cEEEEEeCCCCccC----ccccCccCCC-CCCCc-EEEEEeCChh---------HHhhhCCCceEEccCCCHHHHHHHHH
Q 039180 208 KILLILDNTWKSLD----LGTIGIPFGV-EHRGC-KLLFTTRDLD---------VLIRMGSEKNFSIGILNEQEAWRLFK 272 (790)
Q Consensus 208 r~LlVlDdv~~~~~----~~~l~~~~~~-~~~gs-~iliTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~Lf~ 272 (790)
+.+||+||++.... .+.+...+.. ...+. ++|+||+... +...+.....+.+.+++.++..+++.
T Consensus 105 ~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~ 184 (242)
T 3bos_A 105 FDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQ 184 (242)
T ss_dssp SSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHH
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHH
Confidence 56899999865522 1112111111 01122 4888877421 11112222689999999999999998
Q ss_pred HHhCCCCCCcchHHHHHHHHHHhcCCcHHHHHHH
Q 039180 273 IIAGAYVENRELKSTATSVAKACRGLPIALTIVV 306 (790)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~ 306 (790)
..+..... .-..+..+.+++.++|.+..+..+.
T Consensus 185 ~~~~~~~~-~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 185 RRAAMRGL-QLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHHTTC-CCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHcCC-CCCHHHHHHHHHHccCCHHHHHHHH
Confidence 87642111 1234667889999999887665443
No 180
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.93 E-value=2e-05 Score=85.40 Aligned_cols=160 Identities=13% Similarity=0.136 Sum_probs=96.0
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
...+.|+|++|+||||||+.+++.......-..+++++... +..++...+.... ...+...+. .+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~------~~~~~~~~~~~~~--------~~~~~~~~~-~~ 194 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK------FLNDLVDSMKEGK--------LNEFREKYR-KK 194 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH------HHHHHHHHHHTTC--------HHHHHHHHT-TT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH------HHHHHHHHHHccc--------HHHHHHHhc-CC
Confidence 67899999999999999999998765431112355665432 3333333332111 112233333 14
Q ss_pred cEEEEEeCCCCccC----ccccCccCCC-CCCCcEEEEEeCCh---------hHHhhhCCCceEEccCCCHHHHHHHHHH
Q 039180 208 KILLILDNTWKSLD----LGTIGIPFGV-EHRGCKLLFTTRDL---------DVLIRMGSEKNFSIGILNEQEAWRLFKI 273 (790)
Q Consensus 208 r~LlVlDdv~~~~~----~~~l~~~~~~-~~~gs~iliTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~ 273 (790)
.-+|++||++.... .+.+...+.. ...|..||+||... .+...+.....+.+++++.++..+++.+
T Consensus 195 ~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~ 274 (440)
T 2z4s_A 195 VDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARK 274 (440)
T ss_dssp CSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHH
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHH
Confidence 57999999965432 1122222211 23467788888762 2222243346789999999999999988
Q ss_pred HhCC--CCCCcchHHHHHHHHHHhcCCcHHHHHH
Q 039180 274 IAGA--YVENRELKSTATSVAKACRGLPIALTIV 305 (790)
Q Consensus 274 ~~~~--~~~~~~~~~~~~~i~~~~~glPlai~~~ 305 (790)
.+.. ...+ ++....|++.+.|.+..+.-+
T Consensus 275 ~~~~~~~~i~---~e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 275 MLEIEHGELP---EEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp HHHHHTCCCC---TTHHHHHHHHCCSCHHHHHHH
T ss_pred HHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHH
Confidence 7642 1122 235677888999988655433
No 181
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.91 E-value=0.00018 Score=76.65 Aligned_cols=254 Identities=12% Similarity=0.130 Sum_probs=130.9
Q ss_pred CCChhhhccCCceEEEEecCccccCCC-hhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCcccchhhhc
Q 039180 491 NIPENFFKGVKKLRVVALVKMLLSSLP-SSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIVQLPKALGE 569 (790)
Q Consensus 491 ~lp~~~~~~l~~L~~L~L~~~~~~~lp-~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~~lp~~l~~ 569 (790)
.|+...|.+|.+|+.+.|..+ ++.++ ..|.++ .|..+.+..+ ++.+....+.. .+|+.+.+..+ ++.+......
T Consensus 59 ~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~lp~~-~~~i~~~~F~ 133 (379)
T 4h09_A 59 SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEFPGA-TTEIGNYIFY 133 (379)
T ss_dssp EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEECCTT-CCEECTTTTT
T ss_pred ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccCCCc-cccccccccc
Confidence 467777888888888888644 55553 344444 5666665432 44443344444 36788777654 3333332222
Q ss_pred ccccceecCCccccccccCchhhccccccceEecccCCccchhhccc------------------------ccccccccc
Q 039180 570 LTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPIEWEVERAN------------------------SERSNSSLD 625 (790)
Q Consensus 570 l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~------------------------~~~~~~~~~ 625 (790)
..+|....+.. .+..+....+..+.+++.+.+..+.......... .........
T Consensus 134 ~~~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 211 (379)
T 4h09_A 134 NSSVKRIVIPK--SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKTVTAY 211 (379)
T ss_dssp TCCCCEEEECT--TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEECTT
T ss_pred cceeeeeeccc--eeeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeEEeec
Confidence 23455554443 2344444445666666666554332111000000 000000112
Q ss_pred cccCCCCCcEEEEEecCCCCCCcc--ccccccceeEEEecCCCCCCC-ccccCCccCeeeccceecceecccCCCccccc
Q 039180 626 ELMNLPWLTTLEIDVKNDSILPES--FLTQKLERFKISIGNESFMPS-QSVELPNLEALELCAINVDKIWHYNLLPFMLS 702 (790)
Q Consensus 626 ~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~ 702 (790)
.+..+.+|+.+.+..+ ...+... ..+..|+.+.+..+ +..+.. .+..+.+|+.+.+..+ ++.+ ....+.
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i-----~~~aF~ 283 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTV-----PYLLCS 283 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEE-----CTTTTT
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceec-----cccccc
Confidence 2333445555554322 1111111 12566777766544 222222 4556677887777543 4333 233467
Q ss_pred cCCCccEEeeccCCcccccchhHHHhccccccEEeeccCchhhhHhhcCCCCCCCCcccCCccceeec
Q 039180 703 RFQSLTRLIVRSCPKLKYIFSASMIQNFELLRELSIADCRGLREIISKDRADHVTPCFVFPQMTTLRL 770 (790)
Q Consensus 703 ~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~p~L~~L~l 770 (790)
.|++|+.+.+.++ .++.++. ..+.+|.+|+.+.|.. .++.+...... .|++|+.+.|
T Consensus 284 ~c~~L~~i~l~~~-~i~~I~~-~aF~~c~~L~~i~lp~--~l~~I~~~aF~-------~C~~L~~i~i 340 (379)
T 4h09_A 284 GCSNLTKVVMDNS-AIETLEP-RVFMDCVKLSSVTLPT--ALKTIQVYAFK-------NCKALSTISY 340 (379)
T ss_dssp TCTTCCEEEECCT-TCCEECT-TTTTTCTTCCEEECCT--TCCEECTTTTT-------TCTTCCCCCC
T ss_pred ccccccccccccc-ccceehh-hhhcCCCCCCEEEcCc--cccEEHHHHhh-------CCCCCCEEEE
Confidence 8889999988766 4666643 4677888999988864 35555443222 3566666655
No 182
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.89 E-value=0.00012 Score=76.44 Aligned_cols=153 Identities=12% Similarity=0.082 Sum_probs=93.7
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhcc--------------------CCCEEEEEEeC---CCCCHHHHHHHHHHHhC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDE--------------------LYDMVVFSEVT---QSPDIKQIQQEIAEKLG 184 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~--------------------~f~~~~wv~~~---~~~~~~~~~~~i~~~l~ 184 (790)
.+.+.++|+.|+|||++|+.++....... |++ ..++... .......+ +++.+.+.
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~~~~~i~~i-r~l~~~~~ 101 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGKNTLGVDAV-REVTEKLN 101 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTCSSBCHHHH-HHHHHHTT
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccCCCCCHHHH-HHHHHHHh
Confidence 36789999999999999999998754221 234 2333332 12222222 22333322
Q ss_pred CCCchhHHHHHHHHHHHHHHcCCcEEEEEeCCCCcc--CccccCccCCCCCCCcEEEEEeCChh-HHhh-hCCCceEEcc
Q 039180 185 LELSEEAEFRRASRMFERLKNEKKILLILDNTWKSL--DLGTIGIPFGVEHRGCKLLFTTRDLD-VLIR-MGSEKNFSIG 260 (790)
Q Consensus 185 ~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR~~~-v~~~-~~~~~~~~l~ 260 (790)
.... .+++-++|+|+++... ..+.+...+-....++.+|++|.+.+ +... ......+.+.
T Consensus 102 ~~~~----------------~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~ 165 (334)
T 1a5t_A 102 EHAR----------------LGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLA 165 (334)
T ss_dssp SCCT----------------TSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred hccc----------------cCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCC
Confidence 1110 2467899999997652 23333333333345677777776643 3322 4455789999
Q ss_pred CCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHHHHH
Q 039180 261 ILNEQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIALTI 304 (790)
Q Consensus 261 ~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 304 (790)
+++.++..+.+.+.. .-.++.+..+++.++|.|..+..
T Consensus 166 ~~~~~~~~~~L~~~~------~~~~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 166 PPPEQYAVTWLSREV------TMSQDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp CCCHHHHHHHHHHHC------CCCHHHHHHHHHHTTTCHHHHHH
T ss_pred CCCHHHHHHHHHHhc------CCCHHHHHHHHHHcCCCHHHHHH
Confidence 999999999988775 11234567899999999975543
No 183
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.87 E-value=8.2e-05 Score=75.79 Aligned_cols=156 Identities=16% Similarity=0.160 Sum_probs=88.5
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
.+-+.|+|++|+|||++|+.+++.... ..+.+..+.-.. ... ......+..++......+
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~~~-----~~~~v~~~~~~~--------------~~~-~~~~~~~~~~~~~~~~~~ 110 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATETNA-----TFIRVVGSELVK--------------KFI-GEGASLVKDIFKLAKEKA 110 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHTTC-----EEEEEEGGGGCC--------------CST-THHHHHHHHHHHHHHHTC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCC-----CEEEEehHHHHH--------------hcc-chHHHHHHHHHHHHHHcC
Confidence 456899999999999999999987532 233343322111 111 111233444555555556
Q ss_pred cEEEEEeCCCCcc----------------CccccCccCC--CCCCCcEEEEEeCChhHHhh--h---CCCceEEccCCCH
Q 039180 208 KILLILDNTWKSL----------------DLGTIGIPFG--VEHRGCKLLFTTRDLDVLIR--M---GSEKNFSIGILNE 264 (790)
Q Consensus 208 r~LlVlDdv~~~~----------------~~~~l~~~~~--~~~~gs~iliTtR~~~v~~~--~---~~~~~~~l~~L~~ 264 (790)
+.+|+|||++... .+..+...+. ....+..||.||........ . .....+.+...+.
T Consensus 111 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~ 190 (285)
T 3h4m_A 111 PSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDE 190 (285)
T ss_dssp SEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCH
T ss_pred CeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCH
Confidence 7899999996531 0111111110 12235667778875432221 1 1224789999999
Q ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcC-CcHHHHHH
Q 039180 265 QEAWRLFKIIAGAYVENRELKSTATSVAKACRG-LPIALTIV 305 (790)
Q Consensus 265 ~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~g-lPlai~~~ 305 (790)
++..+++...+........ .....+++...| .|-.+..+
T Consensus 191 ~~r~~il~~~~~~~~~~~~--~~~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 191 KGRLEILKIHTRKMNLAED--VNLEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp HHHHHHHHHHHTTSCBCTT--CCHHHHHHHCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCc--CCHHHHHHHcCCCCHHHHHHH
Confidence 9999999888753322211 124567777777 45444443
No 184
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.85 E-value=1.7e-05 Score=78.94 Aligned_cols=78 Identities=22% Similarity=0.206 Sum_probs=62.5
Q ss_pred ccCCceEEEEecCccccCC---ChhhhhccccceeeccCccccccchhhhhccC--cccEEeccCCCCc-ccch------
Q 039180 498 KGVKKLRVVALVKMLLSSL---PSSIYLLVNLQTLCLDQSILRDIDIAIIGKLK--NLKILSFVRSDIV-QLPK------ 565 (790)
Q Consensus 498 ~~l~~L~~L~L~~~~~~~l---p~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~--~L~~L~L~~~~l~-~lp~------ 565 (790)
.++++|+.|+|++|.+..+ |..+..+++|++|+|++|.+++. ..+..+. +|++|+|++|.+. .+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 5789999999999999865 46778999999999999999884 4456555 9999999999887 4442
Q ss_pred -hhhcccccceec
Q 039180 566 -ALGELTKLRLSD 577 (790)
Q Consensus 566 -~l~~l~~L~~L~ 577 (790)
.+..+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 355667777665
No 185
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.83 E-value=1.3e-05 Score=75.77 Aligned_cols=119 Identities=14% Similarity=0.059 Sum_probs=82.4
Q ss_pred ChhhhhccccceeeccCc-cccccc----hhhhhccCcccEEeccCCCCc-----ccchhhhcccccceecCCccccccc
Q 039180 517 PSSIYLLVNLQTLCLDQS-ILRDID----IAIIGKLKNLKILSFVRSDIV-----QLPKALGELTKLRLSDLTDCFHLKV 586 (790)
Q Consensus 517 p~~~~~l~~L~~L~L~~~-~l~~l~----p~~i~~l~~L~~L~L~~~~l~-----~lp~~l~~l~~L~~L~l~~~~~l~~ 586 (790)
...+...++|++|+|++| .+.... ...+...++|++|+|++|.+. .+...+...++|++|++++| .++.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~ 107 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISG 107 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCH
Confidence 445667889999999999 776532 344556789999999999886 34555667788999999998 5553
Q ss_pred cC----chhhccccccceEec--ccCCccchhhcccccccccccccccCCCCCcEEEEEecCC
Q 039180 587 IA----PNVISSLTRLEELYM--GNCPIEWEVERANSERSNSSLDELMNLPWLTTLEIDVKND 643 (790)
Q Consensus 587 ~~----~~~l~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 643 (790)
.. ...+...++|++|++ ++|.+.... .......+...+.|+.|++++|.+
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g-------~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNV-------EMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHH-------HHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHH-------HHHHHHHHHhCCCcCEEeccCCCC
Confidence 21 223566788999999 778764211 112344566677888888887763
No 186
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.73 E-value=6.5e-05 Score=71.29 Aligned_cols=129 Identities=16% Similarity=0.139 Sum_probs=69.7
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhcc-----CCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDE-----LYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFER 202 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~-----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~ 202 (790)
.+.+.|+|++|+|||++|+.+++...... ....+++++++. + .............+..+.+.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-------~~~~~~~~~~~~~~~~~~~~ 109 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------L-------VAGAKYRGEFEERLKGVLND 109 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------H-------HTTTCSHHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------H-------hccCCccccHHHHHHHHHHH
Confidence 45678999999999999999998864311 122345554321 1 00011111122233444444
Q ss_pred HH-cCCcEEEEEeCCCCcc---------Ccc-ccCccCCCCCCCcEEEEEeCChhHHh-------hhCCCceEEccCCCH
Q 039180 203 LK-NEKKILLILDNTWKSL---------DLG-TIGIPFGVEHRGCKLLFTTRDLDVLI-------RMGSEKNFSIGILNE 264 (790)
Q Consensus 203 l~-~~kr~LlVlDdv~~~~---------~~~-~l~~~~~~~~~gs~iliTtR~~~v~~-------~~~~~~~~~l~~L~~ 264 (790)
+. .+++.+||+||++... ... .+...+ ...+..+|.||....... .......+.+.+++.
T Consensus 110 ~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~ 187 (195)
T 1jbk_A 110 LAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL--ARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSV 187 (195)
T ss_dssp HHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHH--HTTSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCH
T ss_pred HhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhh--ccCCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCH
Confidence 43 3567899999997642 111 111111 122345777776543221 122334688899988
Q ss_pred HHHHHHH
Q 039180 265 QEAWRLF 271 (790)
Q Consensus 265 ~~~~~Lf 271 (790)
++..+++
T Consensus 188 ~~~~~il 194 (195)
T 1jbk_A 188 EDTIAIL 194 (195)
T ss_dssp HHHHTTC
T ss_pred HHHHHHh
Confidence 8876653
No 187
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.72 E-value=0.00049 Score=74.30 Aligned_cols=155 Identities=15% Similarity=0.141 Sum_probs=88.9
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
.+.+.++|++|+||||+|+.+++..... | ..+++.. .....+ +.+ +.........++
T Consensus 50 ~~~vLL~GppGtGKTtlAr~ia~~~~~~--f---~~l~a~~-~~~~~i-r~~----------------~~~a~~~~~~~~ 106 (447)
T 3pvs_A 50 LHSMILWGPPGTGKTTLAEVIARYANAD--V---ERISAVT-SGVKEI-REA----------------IERARQNRNAGR 106 (447)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHTTCE--E---EEEETTT-CCHHHH-HHH----------------HHHHHHHHHTTC
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHhCCC--e---EEEEecc-CCHHHH-HHH----------------HHHHHHhhhcCC
Confidence 4678999999999999999999876322 2 2222221 122221 111 111112222357
Q ss_pred cEEEEEeCCCCcc--CccccCccCCCCCCCcEEEE-EeCChh--HHh-hhCCCceEEccCCCHHHHHHHHHHHhCCC---
Q 039180 208 KILLILDNTWKSL--DLGTIGIPFGVEHRGCKLLF-TTRDLD--VLI-RMGSEKNFSIGILNEQEAWRLFKIIAGAY--- 278 (790)
Q Consensus 208 r~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ili-TtR~~~--v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~--- 278 (790)
+.+|++|++.... ..+.+...+.. ....+|. ||.+.. +.. ......++.+.+++.++...++.+.+...
T Consensus 107 ~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~ 184 (447)
T 3pvs_A 107 RTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRG 184 (447)
T ss_dssp CEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTS
T ss_pred CcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhh
Confidence 8999999997652 33333333322 1233443 544432 111 13445689999999999999998876431
Q ss_pred ---CCCcchHHHHHHHHHHhcCCcHHHHHHHH
Q 039180 279 ---VENRELKSTATSVAKACRGLPIALTIVVK 307 (790)
Q Consensus 279 ---~~~~~~~~~~~~i~~~~~glPlai~~~~~ 307 (790)
....-.++..+.+++.++|.+..+..+-.
T Consensus 185 ~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le 216 (447)
T 3pvs_A 185 YGGQDIVLPDETRRAIAELVNGDARRALNTLE 216 (447)
T ss_dssp STTSSEECCHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred hccccCcCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 11122356778899999998876554443
No 188
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.72 E-value=0.00049 Score=71.13 Aligned_cols=160 Identities=18% Similarity=0.178 Sum_probs=90.8
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
.+-|.++|++|+|||++|+.+++.... ...+.++.+.-.. ..... ....+..+++.....+
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~~----~~~~~i~~~~l~~--------------~~~g~-~~~~~~~lf~~a~~~~ 105 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEANN----STFFSISSSDLVS--------------KWLGE-SEKLVKNLFQLARENK 105 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTS----CEEEEEECCSSCC--------------SSCCS-CHHHHHHHHHHHHHTS
T ss_pred CceEEEECCCCccHHHHHHHHHHHcCC----CcEEEEEhHHHHh--------------hhhhH-HHHHHHHHHHHHHhcC
Confidence 467899999999999999999987621 1233444443211 00011 1123344555555557
Q ss_pred cEEEEEeCCCCccCc-------------cccCccCC---CCCCCcEEEEEeCChhHHh-h--hCCCceEEccCCCHHHHH
Q 039180 208 KILLILDNTWKSLDL-------------GTIGIPFG---VEHRGCKLLFTTRDLDVLI-R--MGSEKNFSIGILNEQEAW 268 (790)
Q Consensus 208 r~LlVlDdv~~~~~~-------------~~l~~~~~---~~~~gs~iliTtR~~~v~~-~--~~~~~~~~l~~L~~~~~~ 268 (790)
+.+|++|+++....- ..+...+. ....+..||.||....... . -.....+.+...+.++-.
T Consensus 106 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~ 185 (322)
T 1xwi_A 106 PSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARA 185 (322)
T ss_dssp SEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHH
T ss_pred CcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHH
Confidence 799999999765110 00101110 1123445555665432111 1 123357889999999999
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHHhcCC-cHHHHHHHH
Q 039180 269 RLFKIIAGAYVENRELKSTATSVAKACRGL-PIALTIVVK 307 (790)
Q Consensus 269 ~Lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-Plai~~~~~ 307 (790)
+++........... .......|++.+.|. +-.|..+..
T Consensus 186 ~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 186 AMFKLHLGTTQNSL-TEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp HHHHHHHTTCCBCC-CHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99988775332211 234567888888886 444555443
No 189
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.68 E-value=0.00044 Score=72.73 Aligned_cols=160 Identities=9% Similarity=0.020 Sum_probs=90.7
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcC
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNE 206 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 206 (790)
..+-|.|+|+.|+|||++|+.++..... ..+.++++.-.. .... .....+..++......
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~-----~~~~i~~~~l~~--------------~~~g-~~~~~~~~~~~~a~~~ 175 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGA-----TFFSISASSLTS--------------KWVG-EGEKMVRALFAVARCQ 175 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTC-----EEEEEEGGGGCC--------------SSTT-HHHHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCC-----eEEEEehHHhhc--------------cccc-hHHHHHHHHHHHHHhc
Confidence 3567899999999999999999987521 244555543211 0111 1122233444444445
Q ss_pred CcEEEEEeCCCCccC-------------ccccCccCC----CCCCCcEEEEEeCChh-HHhh-h-CCCceEEccCCCHHH
Q 039180 207 KKILLILDNTWKSLD-------------LGTIGIPFG----VEHRGCKLLFTTRDLD-VLIR-M-GSEKNFSIGILNEQE 266 (790)
Q Consensus 207 kr~LlVlDdv~~~~~-------------~~~l~~~~~----~~~~gs~iliTtR~~~-v~~~-~-~~~~~~~l~~L~~~~ 266 (790)
++.+|+||+++.... ...+...+. ....+..||.||.... +... . .....+.+...+.++
T Consensus 176 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~ 255 (357)
T 3d8b_A 176 QPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASA 255 (357)
T ss_dssp CSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHH
T ss_pred CCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHH
Confidence 679999999854310 111111111 1123445666776532 1111 1 223478889999999
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHHhcC-CcHHHHHHHH
Q 039180 267 AWRLFKIIAGAYVENRELKSTATSVAKACRG-LPIALTIVVK 307 (790)
Q Consensus 267 ~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~g-lPlai~~~~~ 307 (790)
..+++...+...... -..+....|++.+.| .+-.+..+..
T Consensus 256 r~~il~~~~~~~~~~-l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 256 RKQIVINLMSKEQCC-LSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp HHHHHHHHHHTSCBC-CCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCC-ccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999988876432211 124567789999988 4555655543
No 190
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.65 E-value=0.00038 Score=72.16 Aligned_cols=158 Identities=17% Similarity=0.161 Sum_probs=91.3
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
.+-|.++|++|+|||++|+.+++.... ..+.++.+. +.. .... .....+..++......+
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~-----~~~~v~~~~----------l~~----~~~g-~~~~~~~~~f~~a~~~~ 110 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANS-----TFFSVSSSD----------LVS----KWMG-ESEKLVKQLFAMARENK 110 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTC-----EEEEEEHHH----------HHT----TTGG-GHHHHHHHHHHHHHHTS
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCC-----CEEEEchHH----------Hhh----cccc-hHHHHHHHHHHHHHhcC
Confidence 456899999999999999999987532 133333321 111 1111 12233445555555557
Q ss_pred cEEEEEeCCCCccC-------------ccccCccC---CCCCCCcEEEEEeCChhHHhh---hCCCceEEccCCCHHHHH
Q 039180 208 KILLILDNTWKSLD-------------LGTIGIPF---GVEHRGCKLLFTTRDLDVLIR---MGSEKNFSIGILNEQEAW 268 (790)
Q Consensus 208 r~LlVlDdv~~~~~-------------~~~l~~~~---~~~~~gs~iliTtR~~~v~~~---~~~~~~~~l~~L~~~~~~ 268 (790)
+.+|+||+++.... ...+...+ .....+..||.||........ -.....+.+...+.++-.
T Consensus 111 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~ 190 (322)
T 3eie_A 111 PSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAART 190 (322)
T ss_dssp SEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHH
T ss_pred CeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHH
Confidence 78999999975421 11111111 112335556667765322111 122357888899999999
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHHhcCC-cHHHHHHH
Q 039180 269 RLFKIIAGAYVENRELKSTATSVAKACRGL-PIALTIVV 306 (790)
Q Consensus 269 ~Lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-Plai~~~~ 306 (790)
+++...+....... .......|++.+.|. +-.|..+.
T Consensus 191 ~il~~~~~~~~~~~-~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 191 TMFEINVGDTPCVL-TKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp HHHHHHHTTCCCCC-CHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred HHHHHHhccCCCCC-CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 99998886432221 234567888888874 44454443
No 191
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.64 E-value=0.00015 Score=75.47 Aligned_cols=152 Identities=17% Similarity=0.156 Sum_probs=87.0
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
.+.+.|+|++|+||||+|+.+++..... .. .++++++. .+...+...+... ........+. +
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~-~~-~~~~i~~~------~~~~~~~~~~~~~--------~~~~~~~~~~--~ 98 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR-GY-RVIYSSAD------DFAQAMVEHLKKG--------TINEFRNMYK--S 98 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT-TC-CEEEEEHH------HHHHHHHHHHHHT--------CHHHHHHHHH--T
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC-CC-EEEEEEHH------HHHHHHHHHHHcC--------cHHHHHHHhc--C
Confidence 3568899999999999999999886433 12 24555543 2233333322110 1112233333 3
Q ss_pred cEEEEEeCCCCccC---c-cccCccCCC-CCCCcEEEEEeCCh---------hHHhhhCCCceEEccCCCHHHHHHHHHH
Q 039180 208 KILLILDNTWKSLD---L-GTIGIPFGV-EHRGCKLLFTTRDL---------DVLIRMGSEKNFSIGILNEQEAWRLFKI 273 (790)
Q Consensus 208 r~LlVlDdv~~~~~---~-~~l~~~~~~-~~~gs~iliTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~ 273 (790)
.-+|++||+..... + +.+...+.. ...+.+||+||... .+...+.....+.+.+ +.++..+++..
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~ 177 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKE 177 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHH
Confidence 56999999966432 1 122122111 12356788887642 1222233346799999 99999999988
Q ss_pred HhCCCCCCcchHHHHHHHHHHhcCCcH
Q 039180 274 IAGAYVENRELKSTATSVAKACRGLPI 300 (790)
Q Consensus 274 ~~~~~~~~~~~~~~~~~i~~~~~glPl 300 (790)
.+..... .-.++..+.|++.+ |..-
T Consensus 178 ~~~~~~~-~l~~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 178 KLKEFNL-ELRKEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHHTTC-CCCHHHHHHHHHHC-SSHH
T ss_pred HHHhcCC-CCCHHHHHHHHHhC-CCHH
Confidence 7742211 12245677788888 7654
No 192
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.59 E-value=0.00011 Score=77.45 Aligned_cols=168 Identities=11% Similarity=0.102 Sum_probs=92.1
Q ss_pred EEEEcCCCCcHhHHHHHHHHHhhhc--cCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCCc
Q 039180 131 IGVYGMGGIGKTTLVKEFARRAIED--ELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEKK 208 (790)
Q Consensus 131 v~I~G~~G~GKTtLa~~~~~~~~~~--~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 208 (790)
+.++|+.|+||||+|+.++...... ..+. ++.++.+.......+...+............. ........+++
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 134 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELYGPDLMKSR-ILELNASDERGISIVREKVKNFARLTVSKPSK-----HDLENYPCPPY 134 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHHHTTS-EEEECSSSCCCHHHHTTHHHHHHHSCCCCCCT-----THHHHSCCCSC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcccccc-eEEEccccccchHHHHHHHHHHhhhcccccch-----hhcccCCCCCc
Confidence 8999999999999999999875421 1122 33444444333333222211111000000000 00001112355
Q ss_pred EEEEEeCCCCcc--CccccCccCCCCCCCcEEEEEeCChh-HHhh-hCCCceEEccCCCHHHHHHHHHHHhCCCCCCcch
Q 039180 209 ILLILDNTWKSL--DLGTIGIPFGVEHRGCKLLFTTRDLD-VLIR-MGSEKNFSIGILNEQEAWRLFKIIAGAYVENREL 284 (790)
Q Consensus 209 ~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~ 284 (790)
-+|++|++.... ....+...+.......++|++|.... +... ......+.+.+++.++..+.+...+..... .-.
T Consensus 135 ~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~-~i~ 213 (353)
T 1sxj_D 135 KIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENV-KCD 213 (353)
T ss_dssp EEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTC-CCC
T ss_pred eEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCC-CCC
Confidence 799999986542 22233222322334567777776532 2111 222348899999999999999887643221 122
Q ss_pred HHHHHHHHHHhcCCcHHHHHH
Q 039180 285 KSTATSVAKACRGLPIALTIV 305 (790)
Q Consensus 285 ~~~~~~i~~~~~glPlai~~~ 305 (790)
++..+.|++.++|.|..+..+
T Consensus 214 ~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 214 DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp HHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHH
Confidence 467888999999999865443
No 193
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.57 E-value=0.00016 Score=75.18 Aligned_cols=152 Identities=13% Similarity=0.105 Sum_probs=83.4
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH-cC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLK-NE 206 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~-~~ 206 (790)
.+++.+.|+.|+|||++|+.+++... ..++.++.+... ...+ +.++... ..... .+
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l~-----~~~~~i~~~~~~-~~~i-~~~~~~~----------------~~~~~~~~ 104 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDVN-----ADMMFVNGSDCK-IDFV-RGPLTNF----------------ASAASFDG 104 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHTT-----EEEEEEETTTCC-HHHH-HTHHHHH----------------HHBCCCSS
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhC-----CCEEEEcccccC-HHHH-HHHHHHH----------------HhhcccCC
Confidence 36788889999999999999998763 234556654422 2221 1111111 00000 13
Q ss_pred CcEEEEEeCCCCcc---CccccCccCCCCCCCcEEEEEeCChhH-Hhh-hCCCceEEccCCCHHHHHHHHHH-------H
Q 039180 207 KKILLILDNTWKSL---DLGTIGIPFGVEHRGCKLLFTTRDLDV-LIR-MGSEKNFSIGILNEQEAWRLFKI-------I 274 (790)
Q Consensus 207 kr~LlVlDdv~~~~---~~~~l~~~~~~~~~gs~iliTtR~~~v-~~~-~~~~~~~~l~~L~~~~~~~Lf~~-------~ 274 (790)
++.++|+||++... ..+.+...+.....+.++|+||....- ... ......+.+.+++.++-.+++.. .
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~ 184 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEI 184 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 67899999997653 222222222222245678888876431 111 12235799999998885443322 2
Q ss_pred hCCCCCCcchHHHHHHHHHHhcCCcHHH
Q 039180 275 AGAYVENRELKSTATSVAKACRGLPIAL 302 (790)
Q Consensus 275 ~~~~~~~~~~~~~~~~i~~~~~glPlai 302 (790)
+......-...+....|++.++|.+..+
T Consensus 185 ~~~~~~~~~~~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 185 CKHEGIAIADMKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp HHHHTCCBSCHHHHHHHHHHTCSCTTHH
T ss_pred HHHcCCCCCcHHHHHHHHHhCCCCHHHH
Confidence 2211111111256778888888876543
No 194
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.57 E-value=0.00018 Score=75.81 Aligned_cols=99 Identities=7% Similarity=0.035 Sum_probs=61.5
Q ss_pred CcEEEEEeCCCCcc--CccccCccCCCCCCCcEEEEEeCCh-hHHhh-hCCCceEEccCCCHHHHHHHHHHHhCCCCCCc
Q 039180 207 KKILLILDNTWKSL--DLGTIGIPFGVEHRGCKLLFTTRDL-DVLIR-MGSEKNFSIGILNEQEAWRLFKIIAGAYVENR 282 (790)
Q Consensus 207 kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~ 282 (790)
++-++|+|++.... ....+...+.....+.++|++|... .+... ......+.+.+++.++..+.+...+......
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 212 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ- 212 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE-
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC-
Confidence 56799999997742 1222222222223467788877753 22222 3445789999999999999998876421111
Q ss_pred ch-HHHHHHHHHHhcCCcHHHHHHH
Q 039180 283 EL-KSTATSVAKACRGLPIALTIVV 306 (790)
Q Consensus 283 ~~-~~~~~~i~~~~~glPlai~~~~ 306 (790)
-. ++..+.|++.++|.+..+..+.
T Consensus 213 ~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 213 LETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp ECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 11 2467788999999886555444
No 195
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.57 E-value=0.00069 Score=70.80 Aligned_cols=151 Identities=15% Similarity=0.141 Sum_probs=85.4
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
...|.|+|++|+|||++|+.+++..... .+.++.........+ ...... ..+
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~~~-----~~~~~~~~~~~~~~~---------------------~~~~~~--~~~ 106 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMSAN-----IKTTAAPMIEKSGDL---------------------AAILTN--LSE 106 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTTCC-----EEEEEGGGCCSHHHH---------------------HHHHHT--CCT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCC-----eEEecchhccchhHH---------------------HHHHHh--ccC
Confidence 3458999999999999999998775321 233443322211111 111111 134
Q ss_pred cEEEEEeCCCCcc--CccccCccC------------------CCCCCCcEEEEEeCChhHHh-h-hCC-CceEEccCCCH
Q 039180 208 KILLILDNTWKSL--DLGTIGIPF------------------GVEHRGCKLLFTTRDLDVLI-R-MGS-EKNFSIGILNE 264 (790)
Q Consensus 208 r~LlVlDdv~~~~--~~~~l~~~~------------------~~~~~gs~iliTtR~~~v~~-~-~~~-~~~~~l~~L~~ 264 (790)
..+|+||++.... ....+...+ ....+..++|.+|....... . ... ...+.+.+++.
T Consensus 107 ~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~ 186 (338)
T 3pfi_A 107 GDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKD 186 (338)
T ss_dssp TCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCH
T ss_pred CCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCH
Confidence 5788888886541 111110000 01112356666666533211 1 222 36899999999
Q ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHHHHHHHH
Q 039180 265 QEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIALTIVVK 307 (790)
Q Consensus 265 ~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~ 307 (790)
++..+++.+.+.... .....+..+.+++.+.|.|-.+..+..
T Consensus 187 ~e~~~il~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~l~~~l~ 228 (338)
T 3pfi_A 187 SELALILQKAALKLN-KTCEEKAALEIAKRSRSTPRIALRLLK 228 (338)
T ss_dssp HHHHHHHHHHHHHTT-CEECHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 999999988764222 122346677888899999965554443
No 196
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.56 E-value=0.00013 Score=75.32 Aligned_cols=132 Identities=9% Similarity=0.004 Sum_probs=73.8
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCC--EEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYD--MVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLK 204 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 204 (790)
...-+.|+|++|+|||++|+.+++......... ..+.++.+.- ........ ......++...
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l--------------~~~~~g~~-~~~~~~~~~~~- 129 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL--------------VGQYIGHT-APKTKEVLKRA- 129 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT--------------CCSSTTCH-HHHHHHHHHHH-
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh--------------hhhccccc-HHHHHHHHHhc-
Confidence 345789999999999999999988764432221 2333332211 11111111 11122233322
Q ss_pred cCCcEEEEEeCCCCc-----------cCccccCccCCCCCCCcEEEEEeCChhHHhh-------hC-CCceEEccCCCHH
Q 039180 205 NEKKILLILDNTWKS-----------LDLGTIGIPFGVEHRGCKLLFTTRDLDVLIR-------MG-SEKNFSIGILNEQ 265 (790)
Q Consensus 205 ~~kr~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~iliTtR~~~v~~~-------~~-~~~~~~l~~L~~~ 265 (790)
+.-+|++|+++.. .....+...+.....+..||.||........ .. ....+.+.+++.+
T Consensus 130 --~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~ 207 (309)
T 3syl_A 130 --MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDE 207 (309)
T ss_dssp --TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHH
T ss_pred --CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHH
Confidence 2359999999743 1122232233233445677888765322111 11 1268999999999
Q ss_pred HHHHHHHHHhC
Q 039180 266 EAWRLFKIIAG 276 (790)
Q Consensus 266 ~~~~Lf~~~~~ 276 (790)
+..+++...+.
T Consensus 208 ~~~~il~~~l~ 218 (309)
T 3syl_A 208 ELFEIAGHMLD 218 (309)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 197
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.55 E-value=0.003 Score=66.10 Aligned_cols=150 Identities=15% Similarity=0.163 Sum_probs=89.4
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
.+=|.++|++|+|||.+|+++++..... .+.+..+.-.+ .+..+ ....+..++.......
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l~s--------------k~vGe-se~~vr~lF~~Ar~~a 241 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHTDCK-----FIRVSGAELVQ--------------KYIGE-GSRMVRELFVMAREHA 241 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHHTCE-----EEEEEGGGGSC--------------SSTTH-HHHHHHHHHHHHHHTC
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhhCCC-----ceEEEhHHhhc--------------cccch-HHHHHHHHHHHHHHhC
Confidence 4558899999999999999999986432 34454443211 11111 2234556666666667
Q ss_pred cEEEEEeCCCCccC----------------ccccCccCC--CCCCCcEEEEEeCChhHHhh--h---CCCceEEccCCCH
Q 039180 208 KILLILDNTWKSLD----------------LGTIGIPFG--VEHRGCKLLFTTRDLDVLIR--M---GSEKNFSIGILNE 264 (790)
Q Consensus 208 r~LlVlDdv~~~~~----------------~~~l~~~~~--~~~~gs~iliTtR~~~v~~~--~---~~~~~~~l~~L~~ 264 (790)
+++|++|+++.... ...+...+. ....+-.||.||...+..+. . .-+..+.++.-+.
T Consensus 242 P~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~ 321 (405)
T 4b4t_J 242 PSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSV 321 (405)
T ss_dssp SEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCH
T ss_pred CceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCH
Confidence 89999999976410 000111111 12334456667765433222 1 2346899999999
Q ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCc
Q 039180 265 QEAWRLFKIIAGAYVENRELKSTATSVAKACRGLP 299 (790)
Q Consensus 265 ~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 299 (790)
++-.++|+.+........+. ....+++.+.|.-
T Consensus 322 ~~R~~Il~~~~~~~~l~~dv--dl~~lA~~t~G~S 354 (405)
T 4b4t_J 322 AARAEILRIHSRKMNLTRGI--NLRKVAEKMNGCS 354 (405)
T ss_dssp HHHHHHHHHHHTTSBCCSSC--CHHHHHHHCCSCC
T ss_pred HHHHHHHHHHhcCCCCCccC--CHHHHHHHCCCCC
Confidence 99999998887643322221 1456777887754
No 198
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.53 E-value=0.00095 Score=70.04 Aligned_cols=157 Identities=18% Similarity=0.169 Sum_probs=88.5
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCCc
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEKK 208 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 208 (790)
+-|.++|++|+|||++|+.+++.... ..+.++.+ ++ ... .... ....+..++......++
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~~-----~~~~v~~~------~l----~~~----~~g~-~~~~~~~~f~~a~~~~~ 144 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEANS-----TFFSVSSS------DL----VSK----WMGE-SEKLVKQLFAMARENKP 144 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTC-----EEEEEEHH------HH----HSC----C----CHHHHHHHHHHHHHTSS
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCC-----CEEEeeHH------HH----hhh----hcch-HHHHHHHHHHHHHHcCC
Confidence 45889999999999999999988632 13333322 11 111 0000 11233445555544577
Q ss_pred EEEEEeCCCCccC-------------ccccCccCC---CCCCCcEEEEEeCChhHHh-h--hCCCceEEccCCCHHHHHH
Q 039180 209 ILLILDNTWKSLD-------------LGTIGIPFG---VEHRGCKLLFTTRDLDVLI-R--MGSEKNFSIGILNEQEAWR 269 (790)
Q Consensus 209 ~LlVlDdv~~~~~-------------~~~l~~~~~---~~~~gs~iliTtR~~~v~~-~--~~~~~~~~l~~L~~~~~~~ 269 (790)
.+|+||+++.... ...+...+. ....+..||.||....... . -.....+.+...+.++-.+
T Consensus 145 ~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~ 224 (355)
T 2qp9_X 145 SIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTT 224 (355)
T ss_dssp EEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHH
T ss_pred eEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHH
Confidence 9999999975421 111111110 1123455666776532111 1 1233578899999999999
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHHhcCC-cHHHHHHH
Q 039180 270 LFKIIAGAYVENRELKSTATSVAKACRGL-PIALTIVV 306 (790)
Q Consensus 270 Lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-Plai~~~~ 306 (790)
++........... -......|++.+.|. +-.|..+.
T Consensus 225 il~~~l~~~~~~~-~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 225 MFEINVGDTPSVL-TKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp HHHHHHTTSCBCC-CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHhhCCCCC-CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 9988876432211 134567888999884 44455444
No 199
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.53 E-value=0.00034 Score=73.22 Aligned_cols=153 Identities=12% Similarity=0.087 Sum_probs=83.9
Q ss_pred EEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHH--HcCCc
Q 039180 131 IGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERL--KNEKK 208 (790)
Q Consensus 131 v~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l--~~~kr 208 (790)
+.++|+.|+||||+|+.++........-..+.-++.+.......+.. +...+ .+.. ..+.+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~-~i~~~----------------~~~~~~~~~~~ 111 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRN-QIKDF----------------ASTRQIFSKGF 111 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHT-HHHHH----------------HHBCCSSSCSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHH-HHHHH----------------HhhcccCCCCc
Confidence 88999999999999999998764321001123333333222222211 11111 1000 01246
Q ss_pred EEEEEeCCCCcc--CccccCccCCCCCCCcEEEEEeCChh-HHhh-hCCCceEEccCCCHHHHHHHHHHHhCCCCCCcch
Q 039180 209 ILLILDNTWKSL--DLGTIGIPFGVEHRGCKLLFTTRDLD-VLIR-MGSEKNFSIGILNEQEAWRLFKIIAGAYVENREL 284 (790)
Q Consensus 209 ~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~ 284 (790)
-++|+|+++... ..+.+...+.......++|++|.... +... ......+.+.+++.++..+.+...+...... -.
T Consensus 112 ~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~-i~ 190 (340)
T 1sxj_C 112 KLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLK-LS 190 (340)
T ss_dssp EEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCC-BC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCC-CC
Confidence 789999986541 22222222222234567777776532 2111 3344578999999999988887766321111 12
Q ss_pred HHHHHHHHHHhcCCcHH
Q 039180 285 KSTATSVAKACRGLPIA 301 (790)
Q Consensus 285 ~~~~~~i~~~~~glPla 301 (790)
++..+.|++.++|.+..
T Consensus 191 ~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 191 PNAEKALIELSNGDMRR 207 (340)
T ss_dssp HHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHcCCCHHH
Confidence 45567788888887753
No 200
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.51 E-value=0.00083 Score=71.11 Aligned_cols=173 Identities=9% Similarity=0.012 Sum_probs=90.2
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEe----CCCCCHHHHHHHHHHHhC-C------------------
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEV----TQSPDIKQIQQEIAEKLG-L------------------ 185 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~----~~~~~~~~~~~~i~~~l~-~------------------ 185 (790)
+.+.|+|++|+|||++|+.+++.......| +.+.. +......+...+.++... .
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~ 147 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPF---TAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVI 147 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCSSCCE---EEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhcccCCc---ccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhh
Confidence 578999999999999999999987532122 22222 222333344443333310 0
Q ss_pred ----------CCc-----hhHHHHHHHHHHHHH-HcCC----cEEEEEeCCCCcc--CccccCccCCCCCCCcEEEEEeC
Q 039180 186 ----------ELS-----EEAEFRRASRMFERL-KNEK----KILLILDNTWKSL--DLGTIGIPFGVEHRGCKLLFTTR 243 (790)
Q Consensus 186 ----------~~~-----~~~~~~~~~~l~~~l-~~~k----r~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtR 243 (790)
-.. .......+....... ..++ +.+|++|++.... ....+...+.... ...++++|.
T Consensus 148 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~~~~~~L~~~le~~~-~~~~ii~t~ 226 (368)
T 3uk6_A 148 NSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDM-APVLIMATN 226 (368)
T ss_dssp TC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBHHHHHHHHHHTTCTT-CCEEEEEES
T ss_pred hcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccChHHHHHHHHHhhCcC-CCeeeeecc
Confidence 000 001111222222222 2234 3499999997652 2222222222222 223444443
Q ss_pred C-------------hhHH-hhhCCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhc-CCcHHHHHHH
Q 039180 244 D-------------LDVL-IRMGSEKNFSIGILNEQEAWRLFKIIAGAYVENRELKSTATSVAKACR-GLPIALTIVV 306 (790)
Q Consensus 244 ~-------------~~v~-~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~-glPlai~~~~ 306 (790)
. ..+. ........+.+.+++.++..+++...+..... .-..+..+.|++.+. |.|..+..+.
T Consensus 227 ~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~-~~~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 227 RGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDV-EMSEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp CSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred cceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 1 1111 11233456899999999999999887653221 223456788888887 7776554433
No 201
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.51 E-value=0.001 Score=70.92 Aligned_cols=158 Identities=16% Similarity=0.117 Sum_probs=87.5
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
.+-|.|+|+.|+|||++|+.++..... ..+.++++.-.... .+ .....+..++.......
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~-----~~~~v~~~~l~~~~---------~g------~~~~~~~~~~~~a~~~~ 207 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNA-----TFFNISAASLTSKY---------VG------EGEKLVRALFAVARELQ 207 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEECSCCC----------------------CHHHHHHHHHHHHHSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcC-----cEEEeeHHHhhccc---------cc------hHHHHHHHHHHHHHhcC
Confidence 467899999999999999999877521 23444443322100 00 00122334444444445
Q ss_pred cEEEEEeCCCCccC-------------ccccCccCC----CCCCCcEEEEEeCChhHHh-h-hCCC-ceEEccCCCHHHH
Q 039180 208 KILLILDNTWKSLD-------------LGTIGIPFG----VEHRGCKLLFTTRDLDVLI-R-MGSE-KNFSIGILNEQEA 267 (790)
Q Consensus 208 r~LlVlDdv~~~~~-------------~~~l~~~~~----~~~~gs~iliTtR~~~v~~-~-~~~~-~~~~l~~L~~~~~ 267 (790)
..+|+||+++.... ...+...+. .......||.||....... . .... ..+.+...+.++.
T Consensus 208 ~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r 287 (389)
T 3vfd_A 208 PSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETR 287 (389)
T ss_dssp SEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHH
T ss_pred CeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHH
Confidence 68999999965410 001101110 0122345666666532211 1 2222 4688999999999
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcH-HHHHHH
Q 039180 268 WRLFKIIAGAYVENRELKSTATSVAKACRGLPI-ALTIVV 306 (790)
Q Consensus 268 ~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~~ 306 (790)
.+++...+...... -..+....|++.+.|..- ++..+.
T Consensus 288 ~~il~~~~~~~~~~-l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 288 LLLLKNLLCKQGSP-LTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp HHHHHHHHTTSCCC-SCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHhcCCC-CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 99998877532222 224567789999988654 555543
No 202
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.50 E-value=0.00014 Score=80.74 Aligned_cols=168 Identities=13% Similarity=0.034 Sum_probs=90.7
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHH-HHc
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFER-LKN 205 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~-l~~ 205 (790)
..+.+.|+|++|+||||+|+.+++... + .++.++++.......+ ...+........-... .....+. ...
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~----~-~~i~in~s~~~~~~~~-~~~i~~~~~~~~~~~~---~~~~~~~~~~~ 146 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELG----Y-DILEQNASDVRSKTLL-NAGVKNALDNMSVVGY---FKHNEEAQNLN 146 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTT----C-EEEEECTTSCCCHHHH-HHTGGGGTTBCCSTTT---TTC----CCSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC----C-CEEEEeCCCcchHHHH-HHHHHHHhccccHHHH---Hhhhhhhhhcc
Confidence 357899999999999999999998762 2 2455666655444322 2222211100000000 0000000 012
Q ss_pred CCcEEEEEeCCCCccCc-----cccCccCCCCCCCcEEEEEeCChh---HHhhhCCCceEEccCCCHHHHHHHHHHHhCC
Q 039180 206 EKKILLILDNTWKSLDL-----GTIGIPFGVEHRGCKLLFTTRDLD---VLIRMGSEKNFSIGILNEQEAWRLFKIIAGA 277 (790)
Q Consensus 206 ~kr~LlVlDdv~~~~~~-----~~l~~~~~~~~~gs~iliTtR~~~---v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 277 (790)
+++.+||+|+++....- ..+...+. ..+..||+++.... +.........+.+.+++.++..+++...+..
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~--~~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~ 224 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--KTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIR 224 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHH--HCSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHH--hcCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 46789999999765221 22211111 12334666555422 2222333458999999999999998876642
Q ss_pred CCCCcchHHHHHHHHHHhcCC-cHHHHHHH
Q 039180 278 YVENRELKSTATSVAKACRGL-PIALTIVV 306 (790)
Q Consensus 278 ~~~~~~~~~~~~~i~~~~~gl-Plai~~~~ 306 (790)
.... -.++....|++.++|. +.++..+.
T Consensus 225 ~~~~-i~~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 225 EKFK-LDPNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp HTCC-CCTTHHHHHHHHTTTCHHHHHHHHT
T ss_pred cCCC-CCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 1111 1123567889999994 44455443
No 203
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.47 E-value=0.0032 Score=64.25 Aligned_cols=158 Identities=14% Similarity=0.072 Sum_probs=88.0
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
.+-+.|+|++|+||||+|+.++..... ..+.++.+.... ..... .......++......+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~-----~~~~i~~~~l~~--------------~~~~~-~~~~~~~~~~~~~~~~ 113 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSA-----TFLNISAASLTS--------------KYVGD-GEKLVRALFAVARHMQ 113 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTC-----EEEEEESTTTSS--------------SSCSC-HHHHHHHHHHHHHHTC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCC-----CeEEeeHHHHhh--------------cccch-HHHHHHHHHHHHHHcC
Confidence 467899999999999999999987531 234455443211 00011 1222333444444456
Q ss_pred cEEEEEeCCCCccCcc-------------ccC---ccCCC--CCCCcEEEEEeCChhHHhh---hCCCceEEccCCCHHH
Q 039180 208 KILLILDNTWKSLDLG-------------TIG---IPFGV--EHRGCKLLFTTRDLDVLIR---MGSEKNFSIGILNEQE 266 (790)
Q Consensus 208 r~LlVlDdv~~~~~~~-------------~l~---~~~~~--~~~gs~iliTtR~~~v~~~---~~~~~~~~l~~L~~~~ 266 (790)
+.+|++|+++....-. .+. ..++. .+.+..||.||........ -.....+.+...+.++
T Consensus 114 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~ 193 (297)
T 3b9p_A 114 PSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQT 193 (297)
T ss_dssp SEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHH
T ss_pred CcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHH
Confidence 7899999996542100 000 00111 1123456667775321111 1122577888888888
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcH-HHHHHH
Q 039180 267 AWRLFKIIAGAYVENRELKSTATSVAKACRGLPI-ALTIVV 306 (790)
Q Consensus 267 ~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~~ 306 (790)
...++...+...... -..+....+++.+.|.+- ++..+.
T Consensus 194 r~~il~~~~~~~~~~-~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 194 RELLLNRLLQKQGSP-LDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp HHHHHHHHHGGGSCC-SCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC-CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 888888776432211 123567788999999875 554443
No 204
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.45 E-value=5.8e-05 Score=70.96 Aligned_cols=100 Identities=16% Similarity=0.130 Sum_probs=55.7
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
-..+.|+|+.|+||||||+.++........+. +++++ ..++...+......... ..+.+.+. +
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~~------~~~~~~~~~~~~~~~~~--------~~~~~~~~--~ 100 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFFD------TKDLIFRLKHLMDEGKD--------TKFLKTVL--N 100 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEEE------HHHHHHHHHHHHHHTCC--------SHHHHHHH--T
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEEE------HHHHHHHHHHHhcCchH--------HHHHHHhc--C
Confidence 46789999999999999999998875332222 33333 33444444333221111 12333343 3
Q ss_pred cEEEEEeCCCCc--cCcc--ccCccCCC-CCCCcEEEEEeCC
Q 039180 208 KILLILDNTWKS--LDLG--TIGIPFGV-EHRGCKLLFTTRD 244 (790)
Q Consensus 208 r~LlVlDdv~~~--~~~~--~l~~~~~~-~~~gs~iliTtR~ 244 (790)
.-+|||||++.. ..|. .+...+.. ...|..+|+||..
T Consensus 101 ~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 101 SPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp CSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 468999999742 2222 11111111 1246678888875
No 205
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.41 E-value=0.0025 Score=69.00 Aligned_cols=160 Identities=17% Similarity=0.162 Sum_probs=87.9
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcC
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNE 206 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 206 (790)
..+-|.++|++|+|||++|+.+++.... ...+.++.+.-.+ . ..+... ..+..++......
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~~----~~~~~v~~~~l~~------~---~~g~~~------~~~~~~f~~a~~~ 226 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEANN----STFFSISSSDLVS------K---WLGESE------KLVKNLFQLAREN 226 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCCS----SEEEEECCC------------------CC------CTHHHHHHHHHHS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCC----CCEEEEeHHHHHh------h---hcchHH------HHHHHHHHHHHHc
Confidence 3467899999999999999999987521 1223333322110 0 011110 1123344444445
Q ss_pred CcEEEEEeCCCCccC-------------ccccCccCCC---CCCCcEEEEEeCChhHHhh--h-CCCceEEccCCCHHHH
Q 039180 207 KKILLILDNTWKSLD-------------LGTIGIPFGV---EHRGCKLLFTTRDLDVLIR--M-GSEKNFSIGILNEQEA 267 (790)
Q Consensus 207 kr~LlVlDdv~~~~~-------------~~~l~~~~~~---~~~gs~iliTtR~~~v~~~--~-~~~~~~~l~~L~~~~~ 267 (790)
++.+|+||+++.... ...+...+.. ...+..||.||........ . .....+.+...+.++.
T Consensus 227 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r 306 (444)
T 2zan_A 227 KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHAR 306 (444)
T ss_dssp CSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHH
T ss_pred CCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHH
Confidence 679999999976510 0111111111 1335566667765422211 2 2234788888899999
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHHhcCC-cHHHHHHH
Q 039180 268 WRLFKIIAGAYVENRELKSTATSVAKACRGL-PIALTIVV 306 (790)
Q Consensus 268 ~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-Plai~~~~ 306 (790)
..+|...+....... .......|++.+.|. +-.|..+.
T Consensus 307 ~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 307 AAMFRLHLGSTQNSL-TEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp HHHHHHHHTTSCEEC-CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 999988875332111 234567888899884 44454444
No 206
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.0028 Score=67.39 Aligned_cols=150 Identities=21% Similarity=0.242 Sum_probs=87.8
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
.+=|.++|++|+|||++|+++++..... .+.++.+.-.+ .+..+ ....+..++.......
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~~~~-----~~~v~~s~l~s--------------k~~Ge-se~~ir~~F~~A~~~~ 274 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATIGAN-----FIFSPASGIVD--------------KYIGE-SARIIREMFAYAKEHE 274 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGTCC--------------SSSSH-HHHHHHHHHHHHHHSC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehhhhcc--------------ccchH-HHHHHHHHHHHHHhcC
Confidence 4668899999999999999999986432 34455443221 11111 2234455555555567
Q ss_pred cEEEEEeCCCCccC--------cc--------ccCccCC--CCCCCcEEEEEeCChhHHhh--hC---CCceEEccCCCH
Q 039180 208 KILLILDNTWKSLD--------LG--------TIGIPFG--VEHRGCKLLFTTRDLDVLIR--MG---SEKNFSIGILNE 264 (790)
Q Consensus 208 r~LlVlDdv~~~~~--------~~--------~l~~~~~--~~~~gs~iliTtR~~~v~~~--~~---~~~~~~l~~L~~ 264 (790)
+++|++|+++.... .+ .+...+. ....+..||.||...+..+. .. -...+.++.-+.
T Consensus 275 P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~ 354 (437)
T 4b4t_L 275 PCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNE 354 (437)
T ss_dssp SEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCH
T ss_pred CceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCH
Confidence 89999999975410 00 1111111 12234567777775443332 11 234788888888
Q ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCc
Q 039180 265 QEAWRLFKIIAGAYVENRELKSTATSVAKACRGLP 299 (790)
Q Consensus 265 ~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 299 (790)
++-.++|+.+........+. ....+++.+.|.-
T Consensus 355 ~~R~~Il~~~~~~~~~~~d~--dl~~lA~~t~G~s 387 (437)
T 4b4t_L 355 AGRLEIFKIHTAKVKKTGEF--DFEAAVKMSDGFN 387 (437)
T ss_dssp HHHHHHHHHHHHTSCBCSCC--CHHHHHHTCCSCC
T ss_pred HHHHHHHHHHhcCCCCCccc--CHHHHHHhCCCCC
Confidence 88888998777533222211 1355677777754
No 207
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.34 E-value=0.0022 Score=68.11 Aligned_cols=112 Identities=13% Similarity=0.151 Sum_probs=74.7
Q ss_pred ccccCCCCCcEEEEEecCCCCCCccc--cccccceeEEEecCCCCCCC-ccccCCccCeeeccceecceecccCCCcccc
Q 039180 625 DELMNLPWLTTLEIDVKNDSILPESF--LTQKLERFKISIGNESFMPS-QSVELPNLEALELCAINVDKIWHYNLLPFML 701 (790)
Q Consensus 625 ~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~ 701 (790)
..+..+..|+.+.+..+ ...+.... .+.+|+.+.+..+ +..++. .+..+++|+.+.+.++.++.+ ....+
T Consensus 234 ~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I-----~~~aF 306 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETL-----EPRVF 306 (379)
T ss_dssp TTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEE-----CTTTT
T ss_pred ccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccccccccccccee-----hhhhh
Confidence 34566778888887543 33333222 2677888877543 333333 567789999999988877766 23457
Q ss_pred ccCCCccEEeeccCCcccccchhHHHhccccccEEeeccCchhhhHh
Q 039180 702 SRFQSLTRLIVRSCPKLKYIFSASMIQNFELLRELSIADCRGLREII 748 (790)
Q Consensus 702 ~~l~~L~~L~L~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 748 (790)
.+|.+|+.+.|..+ ++.+.. ..+.+|.+|+.+.+.. .++.+.
T Consensus 307 ~~c~~L~~i~lp~~--l~~I~~-~aF~~C~~L~~i~ip~--~v~~I~ 348 (379)
T 4h09_A 307 MDCVKLSSVTLPTA--LKTIQV-YAFKNCKALSTISYPK--SITLIE 348 (379)
T ss_dssp TTCTTCCEEECCTT--CCEECT-TTTTTCTTCCCCCCCT--TCCEEC
T ss_pred cCCCCCCEEEcCcc--ccEEHH-HHhhCCCCCCEEEECC--ccCEEc
Confidence 88999999999754 666643 4678899999988854 344443
No 208
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.0043 Score=65.86 Aligned_cols=152 Identities=15% Similarity=0.161 Sum_probs=88.6
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHc
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKN 205 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 205 (790)
...+=|.++|++|+|||++|+++++..... .+.++.+.-. .....+ ....+..++.....
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~~~~-----fi~vs~s~L~--------------sk~vGe-sek~ir~lF~~Ar~ 300 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRTDAT-----FIRVIGSELV--------------QKYVGE-GARMVRELFEMART 300 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGGC--------------CCSSSH-HHHHHHHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCCC-----eEEEEhHHhh--------------cccCCH-HHHHHHHHHHHHHh
Confidence 345668899999999999999999986432 3444443311 111111 22344556666555
Q ss_pred CCcEEEEEeCCCCccCc----------------cccCccCC--CCCCCcEEEEEeCChhHHhh--h---CCCceEEccCC
Q 039180 206 EKKILLILDNTWKSLDL----------------GTIGIPFG--VEHRGCKLLFTTRDLDVLIR--M---GSEKNFSIGIL 262 (790)
Q Consensus 206 ~kr~LlVlDdv~~~~~~----------------~~l~~~~~--~~~~gs~iliTtR~~~v~~~--~---~~~~~~~l~~L 262 (790)
..+++|++|+++....- ..+...+. ....+..||.||...+..+. . .-...+.++..
T Consensus 301 ~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lP 380 (467)
T 4b4t_H 301 KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLP 380 (467)
T ss_dssp TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCC
T ss_pred cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCc
Confidence 67899999999754110 00001111 12233445667765332222 1 23468889889
Q ss_pred CHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCc
Q 039180 263 NEQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLP 299 (790)
Q Consensus 263 ~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 299 (790)
+.++-.++|+.+........+. ....|++.+.|.-
T Consensus 381 d~~~R~~Ilk~~l~~~~l~~dv--dl~~LA~~T~GfS 415 (467)
T 4b4t_H 381 DLEGRANIFRIHSKSMSVERGI--RWELISRLCPNST 415 (467)
T ss_dssp CHHHHHHHHHHHHTTSCBCSSC--CHHHHHHHCCSCC
T ss_pred CHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHCCCCC
Confidence 9999999998887643322221 1356777887754
No 209
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.0042 Score=65.25 Aligned_cols=150 Identities=11% Similarity=0.108 Sum_probs=86.8
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
.+=|.++|++|+|||.+|++++...... .+.++.++- ...+..+ ....+..++.......
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~~~-----fi~v~~s~l--------------~sk~vGe-sek~ir~lF~~Ar~~a 275 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTSAT-----FLRIVGSEL--------------IQKYLGD-GPRLCRQIFKVAGENA 275 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHTCE-----EEEEESGGG--------------CCSSSSH-HHHHHHHHHHHHHHTC
T ss_pred CCCCceECCCCchHHHHHHHHHHHhCCC-----EEEEEHHHh--------------hhccCch-HHHHHHHHHHHHHhcC
Confidence 4668999999999999999999986432 334443321 1111111 2234555666665567
Q ss_pred cEEEEEeCCCCccC--------cc--------ccCccCC--CCCCCcEEEEEeCChhHHhh--hC---CCceEEccCCCH
Q 039180 208 KILLILDNTWKSLD--------LG--------TIGIPFG--VEHRGCKLLFTTRDLDVLIR--MG---SEKNFSIGILNE 264 (790)
Q Consensus 208 r~LlVlDdv~~~~~--------~~--------~l~~~~~--~~~~gs~iliTtR~~~v~~~--~~---~~~~~~l~~L~~ 264 (790)
+++|++|+++.... .+ .+...+. ....+..||.||...+..+. .. -+..+.++.-+.
T Consensus 276 P~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~ 355 (437)
T 4b4t_I 276 PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDL 355 (437)
T ss_dssp SEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCH
T ss_pred CcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCH
Confidence 89999999875411 00 0100010 12234456667766443333 11 124678888888
Q ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCc
Q 039180 265 QEAWRLFKIIAGAYVENRELKSTATSVAKACRGLP 299 (790)
Q Consensus 265 ~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 299 (790)
++-.++|+.+........+. ....|++.+.|.-
T Consensus 356 ~~R~~Il~~~l~~~~l~~dv--dl~~LA~~T~GfS 388 (437)
T 4b4t_I 356 STKKKILGIHTSKMNLSEDV--NLETLVTTKDDLS 388 (437)
T ss_dssp HHHHHHHHHHHTTSCBCSCC--CHHHHHHHCCSCC
T ss_pred HHHHHHHHHHhcCCCCCCcC--CHHHHHHhCCCCC
Confidence 88889998887643322221 1355777777753
No 210
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.28 E-value=0.00025 Score=67.90 Aligned_cols=98 Identities=16% Similarity=0.132 Sum_probs=55.3
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCCc
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEKK 208 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 208 (790)
+.+.|+|++|+|||+||+.+++..... ...+++++++ .+...+........ ...+.+.+.+ .
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~~~--------~~~~~~~~~~-~- 116 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYVP------ELFRELKHSLQDQT--------MNEKLDYIKK-V- 116 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEHH------HHHHHHHHC---CC--------CHHHHHHHHH-S-
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEhH------HHHHHHHHHhccch--------HHHHHHHhcC-C-
Confidence 678999999999999999999887543 3345666553 33333333221110 1223334443 2
Q ss_pred EEEEEeCCCCc--cCccc--cCc-cCCCC-CCCcEEEEEeCC
Q 039180 209 ILLILDNTWKS--LDLGT--IGI-PFGVE-HRGCKLLFTTRD 244 (790)
Q Consensus 209 ~LlVlDdv~~~--~~~~~--l~~-~~~~~-~~gs~iliTtR~ 244 (790)
-+|||||++.. ..|.. +.. .+... ..+.++|+||..
T Consensus 117 ~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 117 PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 39999999653 33332 211 11111 235578888875
No 211
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.18 E-value=0.0024 Score=65.28 Aligned_cols=152 Identities=15% Similarity=0.167 Sum_probs=84.9
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
.+.|.++|++|+|||++|+.++..... ..+.++. .++.... .+... ..+..+++......
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~~~-----~~i~v~~------~~l~~~~---~g~~~------~~~~~~f~~a~~~~ 108 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANECQA-----NFISIKG------PELLTMW---FGESE------ANVREIFDKARQAA 108 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTTC-----EEEEECH------HHHHHHH---HTTCT------THHHHHHHHHHHTC
T ss_pred CceEEEECCCCcCHHHHHHHHHHHhCC-----CEEEEEh------HHHHhhh---cCchH------HHHHHHHHHHHhcC
Confidence 467899999999999999999987631 1233321 2222211 22111 12334455444456
Q ss_pred cEEEEEeCCCCccC----------------ccccCccCC--CCCCCcEEEEEeCChhHHhh--hC---CCceEEccCCCH
Q 039180 208 KILLILDNTWKSLD----------------LGTIGIPFG--VEHRGCKLLFTTRDLDVLIR--MG---SEKNFSIGILNE 264 (790)
Q Consensus 208 r~LlVlDdv~~~~~----------------~~~l~~~~~--~~~~gs~iliTtR~~~v~~~--~~---~~~~~~l~~L~~ 264 (790)
+.+|++|+++.... ...+...+. ....+..||.||...+.... .. -...+.+...+.
T Consensus 109 p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~ 188 (301)
T 3cf0_A 109 PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 188 (301)
T ss_dssp SEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCH
T ss_pred CeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCH
Confidence 79999999974310 011111111 12235567777776432222 22 235789999999
Q ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHH
Q 039180 265 QEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIA 301 (790)
Q Consensus 265 ~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla 301 (790)
++-.+++...........+. ....+++.+.|.|-+
T Consensus 189 ~~r~~il~~~l~~~~~~~~~--~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 189 KSRVAILKANLRKSPVAKDV--DLEFLAKMTNGFSGA 223 (301)
T ss_dssp HHHHHHHHHHHTTSCBCSSC--CHHHHHHTCSSCCHH
T ss_pred HHHHHHHHHHHccCCCCccc--hHHHHHHHcCCCCHH
Confidence 99999998877532221111 123566667777654
No 212
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.0053 Score=65.16 Aligned_cols=150 Identities=17% Similarity=0.162 Sum_probs=81.8
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
.+=|.++|++|+|||++|+++++..... .+.++.++-.+ .... .....+..++.......
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~~~~-----~~~v~~~~l~~--------------~~~G-e~e~~ir~lF~~A~~~a 265 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANSTKAA-----FIRVNGSEFVH--------------KYLG-EGPRMVRDVFRLARENA 265 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHHTCE-----EEEEEGGGTCC--------------SSCS-HHHHHHHHHHHHHHHTC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCC-----eEEEecchhhc--------------cccc-hhHHHHHHHHHHHHHcC
Confidence 4568999999999999999999986432 34555443221 1111 12234555666665567
Q ss_pred cEEEEEeCCCCcc--------Cc--------cccCccCC--CCCCCcEEEEEeCChhHHhh--hC---CCceEEccCC-C
Q 039180 208 KILLILDNTWKSL--------DL--------GTIGIPFG--VEHRGCKLLFTTRDLDVLIR--MG---SEKNFSIGIL-N 263 (790)
Q Consensus 208 r~LlVlDdv~~~~--------~~--------~~l~~~~~--~~~~gs~iliTtR~~~v~~~--~~---~~~~~~l~~L-~ 263 (790)
+++|++|+++... .. ..+...+. ....+-.||.||...+..+. .. -...+.+..+ +
T Consensus 266 P~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd 345 (428)
T 4b4t_K 266 PSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRD 345 (428)
T ss_dssp SEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCC
T ss_pred CCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCC
Confidence 8999999986431 00 01111111 12334456777765432222 22 2246777656 4
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCc
Q 039180 264 EQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLP 299 (790)
Q Consensus 264 ~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 299 (790)
.++-..+|..+.......++. ....+++.+.|.-
T Consensus 346 ~~~R~~Il~~~~~~~~l~~~~--dl~~lA~~t~G~s 379 (428)
T 4b4t_K 346 RRERRLIFGTIASKMSLAPEA--DLDSLIIRNDSLS 379 (428)
T ss_dssp HHHHHHHHHHHHHSSCBCTTC--CHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHhcCCCCCccc--CHHHHHHHCCCCC
Confidence 555556776666432222111 1356777777753
No 213
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.15 E-value=0.001 Score=70.65 Aligned_cols=151 Identities=15% Similarity=0.135 Sum_probs=84.9
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcC
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNE 206 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 206 (790)
..+=|.++|++|+|||.+|++++...... .+.++.+.-. ..+..+ ....+..++......
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l~--------------~~~vGe-se~~ir~lF~~A~~~ 273 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTNAT-----FLKLAAPQLV--------------QMYIGE-GAKLVRDAFALAKEK 273 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGGC--------------SSCSSH-HHHHHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhCCC-----EEEEehhhhh--------------hcccch-HHHHHHHHHHHHHhc
Confidence 35678999999999999999999986432 3444443311 111111 123344555555445
Q ss_pred CcEEEEEeCCCCcc-------C---------ccccCccCCC--CCCCcEEEEEeCChhHHhh-h-C---CCceEEccCCC
Q 039180 207 KKILLILDNTWKSL-------D---------LGTIGIPFGV--EHRGCKLLFTTRDLDVLIR-M-G---SEKNFSIGILN 263 (790)
Q Consensus 207 kr~LlVlDdv~~~~-------~---------~~~l~~~~~~--~~~gs~iliTtR~~~v~~~-~-~---~~~~~~l~~L~ 263 (790)
.+++|++|+++... . ...+...+.. ...+-.||.||...+..+. + . -...+.++.-+
T Consensus 274 aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd 353 (434)
T 4b4t_M 274 APTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPS 353 (434)
T ss_dssp CSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCC
T ss_pred CCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcC
Confidence 68999999986431 0 0011111111 1223345557765433332 1 1 23478888889
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCc
Q 039180 264 EQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLP 299 (790)
Q Consensus 264 ~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 299 (790)
.++-.++|+.+........+. ....|++.+.|.-
T Consensus 354 ~~~R~~Il~~~~~~~~~~~dv--dl~~lA~~t~G~s 387 (434)
T 4b4t_M 354 EDSRAQILQIHSRKMTTDDDI--NWQELARSTDEFN 387 (434)
T ss_dssp HHHHHHHHHHHHHHSCBCSCC--CHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHhcCCCCCCcC--CHHHHHHhCCCCC
Confidence 888888988776432222211 1356777887753
No 214
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.05 E-value=0.0033 Score=67.94 Aligned_cols=148 Identities=16% Similarity=0.150 Sum_probs=84.4
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCCcE
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEKKI 209 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~ 209 (790)
-|.++|++|+|||++|+.++..... . .+.++.++-... .... ....+..++.....+.+.
T Consensus 51 gvLL~GppGtGKT~Laraia~~~~~--~---f~~is~~~~~~~--------------~~g~-~~~~~r~lf~~A~~~~p~ 110 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEANV--P---FFHISGSDFVEL--------------FVGV-GAARVRDLFAQAKAHAPC 110 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTC--C---EEEEEGGGTTTC--------------CTTH-HHHHHHHHHHHHHHTCSE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCC--C---eeeCCHHHHHHH--------------Hhcc-cHHHHHHHHHHHHhcCCC
Confidence 3789999999999999999987632 1 234444432210 0011 122334455555545789
Q ss_pred EEEEeCCCCccC----------------ccccCccCC--CCCCCcEEEEEeCChhHHhh--hC---CCceEEccCCCHHH
Q 039180 210 LLILDNTWKSLD----------------LGTIGIPFG--VEHRGCKLLFTTRDLDVLIR--MG---SEKNFSIGILNEQE 266 (790)
Q Consensus 210 LlVlDdv~~~~~----------------~~~l~~~~~--~~~~gs~iliTtR~~~v~~~--~~---~~~~~~l~~L~~~~ 266 (790)
+|+||+++.... ...+...+. ....+..||.||...+.... .. -...+.++..+.++
T Consensus 111 ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~ 190 (476)
T 2ce7_A 111 IVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLG 190 (476)
T ss_dssp EEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHH
T ss_pred EEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHH
Confidence 999999965311 111111110 11235567777776543332 22 22478888888888
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCc
Q 039180 267 AWRLFKIIAGAYVENRELKSTATSVAKACRGLP 299 (790)
Q Consensus 267 ~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 299 (790)
-.+++..++......++. ....+++.+.|..
T Consensus 191 R~~Il~~~~~~~~l~~~v--~l~~la~~t~G~s 221 (476)
T 2ce7_A 191 RKKILEIHTRNKPLAEDV--NLEIIAKRTPGFV 221 (476)
T ss_dssp HHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred HHHHHHHHHHhCCCcchh--hHHHHHHhcCCCc
Confidence 888888777533222221 1344777888876
No 215
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.00 E-value=0.0019 Score=65.80 Aligned_cols=129 Identities=14% Similarity=0.036 Sum_probs=81.3
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhh--ccCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIE--DELYDMVVFSEVTQ-SPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLK 204 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~--~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 204 (790)
.+...++|+.|+||||+|+.+++.... ..+.+ +.+++.+. ...+..+ +++.+.+.....
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i-r~li~~~~~~p~---------------- 79 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIKDFLNYSPE---------------- 79 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHHHHHTSCCS----------------
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH-HHHHHHHhhccc----------------
Confidence 578899999999999999999875311 12344 34555443 3444433 234444332211
Q ss_pred cCCcEEEEEeCCCCc--cCccccCccCCCCCCCcEEEEEeCCh-hHHhhhCCCceEEccCCCHHHHHHHHHHHh
Q 039180 205 NEKKILLILDNTWKS--LDLGTIGIPFGVEHRGCKLLFTTRDL-DVLIRMGSEKNFSIGILNEQEAWRLFKIIA 275 (790)
Q Consensus 205 ~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtR~~-~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 275 (790)
.+++-++|+|+++.. ...+.+...+-...+.+.+|++|.+. .+...+... .+++.+++.++..+.+.+..
T Consensus 80 ~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 145789999999765 23444444443344567777776553 344444444 99999999999999988776
No 216
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.98 E-value=0.0045 Score=62.87 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=23.7
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
..+.+.++|++|+|||++|+.+++...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346788999999999999999999873
No 217
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.79 E-value=0.017 Score=57.31 Aligned_cols=154 Identities=17% Similarity=0.168 Sum_probs=81.3
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCCc
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEKK 208 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 208 (790)
+-+.|+|+.|+||||+|+.++..... . .+.++.+.-.+. .. . . ....+..+++.......
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~~--~---~~~i~~~~~~~~----------~~-~---~-~~~~~~~~~~~a~~~~~ 105 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAKV--P---FFTISGSDFVEM----------FV-G---V-GASRVRDMFEQAKKAAP 105 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTC--C---EEEECSCSSTTS----------CC-C---C-CHHHHHHHHHHHHTTCS
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcCC--C---EEEEeHHHHHHH----------hh-h---h-hHHHHHHHHHHHHHcCC
Confidence 34889999999999999999987532 1 234433321110 00 0 0 01223344555444566
Q ss_pred EEEEEeCCCCccC--c--------------cccCccCC--CCCCCcEEEEEeCChhHH-hh-hC---CCceEEccCCCHH
Q 039180 209 ILLILDNTWKSLD--L--------------GTIGIPFG--VEHRGCKLLFTTRDLDVL-IR-MG---SEKNFSIGILNEQ 265 (790)
Q Consensus 209 ~LlVlDdv~~~~~--~--------------~~l~~~~~--~~~~gs~iliTtR~~~v~-~~-~~---~~~~~~l~~L~~~ 265 (790)
.++++|+++.... . ..+...+. ....+..||.||...+.. .. .. -...+.+...+.+
T Consensus 106 ~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~ 185 (257)
T 1lv7_A 106 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 185 (257)
T ss_dssp EEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHH
T ss_pred eeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHH
Confidence 8999999843210 0 00100000 112345677777654322 21 11 2347788888888
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHHhcC-CcHHHHH
Q 039180 266 EAWRLFKIIAGAYVENRELKSTATSVAKACRG-LPIALTI 304 (790)
Q Consensus 266 ~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~g-lPlai~~ 304 (790)
+-.+++..........++. ....++....| .+--+..
T Consensus 186 ~r~~il~~~~~~~~l~~~~--~~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 186 GREQILKVHMRRVPLAPDI--DAAIIARGTPGFSGADLAN 223 (257)
T ss_dssp HHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCCHHHHHH
T ss_pred HHHHHHHHHHhcCCCCccc--cHHHHHHHcCCCCHHHHHH
Confidence 8888887776432221111 13346667777 5554443
No 218
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.79 E-value=0.0026 Score=59.57 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=23.0
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIE 154 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~ 154 (790)
.+.+.|+|++|+|||++|+.+++....
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 456789999999999999999988643
No 219
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.72 E-value=0.00032 Score=63.04 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHh
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
-|.|+|..|+|||++|+.+++..
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSS
T ss_pred CEEEECCCCCCHHHHHHHHHHhC
Confidence 36899999999999999998764
No 220
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.72 E-value=0.011 Score=58.08 Aligned_cols=89 Identities=17% Similarity=0.180 Sum_probs=55.6
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhcc----CCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCc-------------hhH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDE----LYDMVVFSEVTQSPDIKQIQQEIAEKLGLELS-------------EEA 191 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------------~~~ 191 (790)
.++.|+|++|+|||||+..++....... .-..++|++....+....+. .+++.++.... ...
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTDH 103 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHHH
Confidence 5899999999999999999987632211 13578999888766655443 34445544321 111
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEeCCCC
Q 039180 192 EFRRASRMFERLKNEKKILLILDNTWK 218 (790)
Q Consensus 192 ~~~~~~~l~~~l~~~kr~LlVlDdv~~ 218 (790)
....+..+.+.+...+.-+||+|++..
T Consensus 104 ~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 104 QTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 112233344445445678999999854
No 221
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.63 E-value=0.0083 Score=65.38 Aligned_cols=156 Identities=15% Similarity=0.173 Sum_probs=86.0
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
.+-|.|+|++|+|||++|+.+++... ...+.++++. +... ... ........+++....++
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~~-----~~fv~vn~~~----------l~~~----~~g-~~~~~~~~~f~~A~~~~ 297 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANETG-----AFFFLINGPE----------IMSK----LAG-ESESNLRKAFEEAEKNA 297 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHCS-----SEEEEEEHHH----------HHTS----CTT-HHHHHHHHHHHHHHHTC
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHhC-----CCEEEEEchH----------hhhh----hcc-hhHHHHHHHHHHHHhcC
Confidence 45689999999999999999988752 1234444321 1111 111 11223344555555567
Q ss_pred cEEEEEeCCCCccC-------------ccccCccCC--CCCCCcEEEEEeCChhH-Hhhh----CCCceEEccCCCHHHH
Q 039180 208 KILLILDNTWKSLD-------------LGTIGIPFG--VEHRGCKLLFTTRDLDV-LIRM----GSEKNFSIGILNEQEA 267 (790)
Q Consensus 208 r~LlVlDdv~~~~~-------------~~~l~~~~~--~~~~gs~iliTtR~~~v-~~~~----~~~~~~~l~~L~~~~~ 267 (790)
+.+|+||+++.... ...+...+. ....+.+||.||..... ...+ .....+.+...+.++-
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR 377 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHH
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHH
Confidence 78999999843210 011111111 12234566667765422 1121 2234789999999999
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHHhcCC-cHHHHHH
Q 039180 268 WRLFKIIAGAYVENRELKSTATSVAKACRGL-PIALTIV 305 (790)
Q Consensus 268 ~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-Plai~~~ 305 (790)
.+++..++.......+ .....+++.+.|. +-.+..+
T Consensus 378 ~~IL~~~~~~~~l~~~--~~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 378 LEILQIHTKNMKLADD--VDLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp HHHHHHHTTTSCBCTT--CCHHHHHHTCTTCCHHHHHHH
T ss_pred HHHHHHHHhcCCCcch--hhHHHHHHHccCCcHHHHHHH
Confidence 9999988753322211 1134566677774 4444444
No 222
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.62 E-value=0.0023 Score=65.78 Aligned_cols=85 Identities=15% Similarity=0.257 Sum_probs=46.2
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
...+.++|+.|+|||++|+.++...... -...+.++++....... .. ..++....... ......+...+....
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~--~~~~~~~~~~~~~~~~~-~~---~l~g~~~~~~~-~~~~~~~~~~~~~~~ 119 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEYMEKHA-VS---RLIGAPPGYVG-YEEGGQLTEAVRRRP 119 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSC--GGGEEEEEGGGCCSTTH-HH---HHHCCCTTSTT-TTTCCHHHHHHHHCS
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCC--CcceEEeeccccccccc-HH---HhcCCCCcccc-ccccchHHHHHHhCC
Confidence 4579999999999999999999876432 12245566554332211 11 11221110000 000012333344345
Q ss_pred cEEEEEeCCCCc
Q 039180 208 KILLILDNTWKS 219 (790)
Q Consensus 208 r~LlVlDdv~~~ 219 (790)
.-+++||+++..
T Consensus 120 ~~vl~lDEi~~l 131 (311)
T 4fcw_A 120 YSVILFDAIEKA 131 (311)
T ss_dssp SEEEEEETGGGS
T ss_pred CeEEEEeChhhc
Confidence 579999999755
No 223
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.58 E-value=0.011 Score=59.41 Aligned_cols=86 Identities=9% Similarity=0.123 Sum_probs=57.8
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCch-----hHHHHHH-HHHHHH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSE-----EAEFRRA-SRMFER 202 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~-~~l~~~ 202 (790)
.++-|.|.+|+||||||.+++........-..++||+....++.. .+++++.+... ....+.+ ..+.+.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 378999999999999999988765432112468999998888764 37777766432 1112222 233344
Q ss_pred H---HcCCcEEEEEeCCCCc
Q 039180 203 L---KNEKKILLILDNTWKS 219 (790)
Q Consensus 203 l---~~~kr~LlVlDdv~~~ 219 (790)
+ .+++.-++|+|-+...
T Consensus 104 l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTC
T ss_pred HHHhhccCceEEEEeccccc
Confidence 3 4567789999999654
No 224
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.57 E-value=0.0042 Score=69.02 Aligned_cols=136 Identities=18% Similarity=0.119 Sum_probs=64.7
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
-..+.++|++|+||||+|+.++...... ...+.++...+...+........+.. ...+...+..... .
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l~~~-----~~~i~~~~~~~~~~~~g~~~~~ig~~------~~~~~~~~~~a~~-~ 175 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSLGRK-----FVRISLGGVRDESEIRGHRRTYVGAM------PGRIIQGMKKAGK-L 175 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHHTCE-----EEEECCCC--------------------------CHHHHHHTTCS-S
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCC-----eEEEEecccchhhhhhhHHHHHhccC------chHHHHHHHHhhc-c
Confidence 5689999999999999999999886322 22333333222221111111111100 0111112222222 3
Q ss_pred cEEEEEeCCCCccC------ccccCccCCCC---------------CCCcEEEEEeCChhHHh-h-hCCCceEEccCCCH
Q 039180 208 KILLILDNTWKSLD------LGTIGIPFGVE---------------HRGCKLLFTTRDLDVLI-R-MGSEKNFSIGILNE 264 (790)
Q Consensus 208 r~LlVlDdv~~~~~------~~~l~~~~~~~---------------~~gs~iliTtR~~~v~~-~-~~~~~~~~l~~L~~ 264 (790)
.-++++|+++.... ...+...+... .....+|.||....... . ......+.+.+++.
T Consensus 176 ~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~vi~~~~~~~ 255 (543)
T 3m6a_A 176 NPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYTE 255 (543)
T ss_dssp SEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEEEEECCCCCH
T ss_pred CCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhcceeeeCCCCH
Confidence 34888999876521 12222222110 02345666666532111 1 12224788899998
Q ss_pred HHHHHHHHHHh
Q 039180 265 QEAWRLFKIIA 275 (790)
Q Consensus 265 ~~~~~Lf~~~~ 275 (790)
++-.+++..+.
T Consensus 256 ~e~~~Il~~~l 266 (543)
T 3m6a_A 256 IEKLEIVKDHL 266 (543)
T ss_dssp HHHHHHHHHTH
T ss_pred HHHHHHHHHHH
Confidence 88888776643
No 225
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.55 E-value=0.011 Score=60.65 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.+-+.++|++|+|||++|+.+++..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3457899999999999999999876
No 226
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.49 E-value=0.0063 Score=71.86 Aligned_cols=154 Identities=13% Similarity=0.126 Sum_probs=76.9
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccC-----CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDEL-----YDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFER 202 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~ 202 (790)
.+-+.++|.+|+||||+|+.++........ -..+++++++.-.. +..... .....+..+++.
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------------g~~~~g-~~~~~l~~~~~~ 257 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------------GAKYRG-EFEERLKAVIQE 257 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------------------CHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc------------cCccch-HHHHHHHHHHHH
Confidence 445789999999999999999988643210 12345554432110 000000 112234455555
Q ss_pred HHc-CCcEEEEEeCCCCccC-------ccc---cCccCCCCCCCcEEEEEeCChhHH-----hh-hCCCceEEccCCCHH
Q 039180 203 LKN-EKKILLILDNTWKSLD-------LGT---IGIPFGVEHRGCKLLFTTRDLDVL-----IR-MGSEKNFSIGILNEQ 265 (790)
Q Consensus 203 l~~-~kr~LlVlDdv~~~~~-------~~~---l~~~~~~~~~gs~iliTtR~~~v~-----~~-~~~~~~~~l~~L~~~ 265 (790)
+.. +++.+|++|++..... ++. +...+ . ..+..+|.+|...... .. ......+.+++++.+
T Consensus 258 ~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l-~-~~~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~ 335 (854)
T 1qvr_A 258 VVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL-A-RGELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVE 335 (854)
T ss_dssp HHTTCSSEEEEECCC-------------------HHHH-H-TTCCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHH
T ss_pred HHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHH-h-CCCeEEEEecCchHHhhhccCHHHHhCCceEEeCCCCHH
Confidence 553 3679999999976420 211 21111 1 1233455555543221 11 223346999999999
Q ss_pred HHHHHHHHHhC---CCCCCcchHHHHHHHHHHhc
Q 039180 266 EAWRLFKIIAG---AYVENRELKSTATSVAKACR 296 (790)
Q Consensus 266 ~~~~Lf~~~~~---~~~~~~~~~~~~~~i~~~~~ 296 (790)
+..+++..... ......-..+....+++.+.
T Consensus 336 e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~ 369 (854)
T 1qvr_A 336 ETISILRGLKEKYEVHHGVRISDSAIIAAATLSH 369 (854)
T ss_dssp HHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHh
Confidence 99999875432 11111122344555665553
No 227
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.42 E-value=0.0075 Score=65.71 Aligned_cols=128 Identities=15% Similarity=0.145 Sum_probs=66.7
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccC---C-C-EEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDEL---Y-D-MVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFE 201 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~---f-~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~ 201 (790)
...-+.++|++|+|||++|+.++........ . + .++.++++ ...... ....+..+++
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-------------~~~~g~-----~e~~~~~~~~ 261 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------------TKYRGE-----FEDRLKKVMD 261 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------------------CTTHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-------------ccccch-----HHHHHHHHHH
Confidence 3345689999999999999999988632210 0 1 12233332 000000 0012344555
Q ss_pred HHHcCCcEEEEEeCCCCccCccccCccCCCCCCCcEEEEEeCChhHHh------h-hCCCceEEccCCCHHHHHHHHHHH
Q 039180 202 RLKNEKKILLILDNTWKSLDLGTIGIPFGVEHRGCKLLFTTRDLDVLI------R-MGSEKNFSIGILNEQEAWRLFKII 274 (790)
Q Consensus 202 ~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtR~~~v~~------~-~~~~~~~~l~~L~~~~~~~Lf~~~ 274 (790)
.....++.+|++| ........+...+. ....++|.+|....... . .....++.++..+.++..+++...
T Consensus 262 ~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~ 337 (468)
T 3pxg_A 262 EIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGL 337 (468)
T ss_dssp HHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHT
T ss_pred HHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHH
Confidence 5554567899999 22222222333332 12345665555443111 1 223357999999999999999876
Q ss_pred hC
Q 039180 275 AG 276 (790)
Q Consensus 275 ~~ 276 (790)
..
T Consensus 338 ~~ 339 (468)
T 3pxg_A 338 RD 339 (468)
T ss_dssp TT
T ss_pred HH
Confidence 53
No 228
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.39 E-value=0.014 Score=56.33 Aligned_cols=45 Identities=22% Similarity=0.210 Sum_probs=34.7
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQ 177 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 177 (790)
-.++.|+|.+|+||||+|..++. . . -..++|++.....+...+.+
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~--~-~--~~~v~~i~~~~~~~~~~~~~ 64 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL--L-S--GKKVAYVDTEGGFSPERLVQ 64 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--H-H--CSEEEEEESSCCCCHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--H-c--CCcEEEEECCCCCCHHHHHH
Confidence 35899999999999999999987 2 1 34688998877666655543
No 229
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.33 E-value=0.032 Score=55.80 Aligned_cols=126 Identities=17% Similarity=0.201 Sum_probs=72.8
Q ss_pred EEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCCcEE
Q 039180 131 IGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEKKIL 210 (790)
Q Consensus 131 v~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~L 210 (790)
+.++|++|+||||||+.++..... ..+++...+-.+. ... .....+..+++........+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~--------------~~~-~~~~~i~~vf~~a~~~~p~i 106 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNM--------------YVG-ESERAVRQVFQRAKNSAPCV 106 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSS--------------TTH-HHHHHHHHHHHHHHHTCSEE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhh--------------hhh-HHHHHHHHHHHHHHhcCCCe
Confidence 999999999999999999987532 2455544332110 000 11223444555543346789
Q ss_pred EEEeCCCCccCc------cc-------cCccCCC--CCCCcEEEEEeCChhHHhh--h---CCCceEEccCCCHHHHHHH
Q 039180 211 LILDNTWKSLDL------GT-------IGIPFGV--EHRGCKLLFTTRDLDVLIR--M---GSEKNFSIGILNEQEAWRL 270 (790)
Q Consensus 211 lVlDdv~~~~~~------~~-------l~~~~~~--~~~gs~iliTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~L 270 (790)
+++|+++..... .. +...+.. .....-++.+|...++.+. . .-...+.++..+.++-.++
T Consensus 107 ~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~i 186 (274)
T 2x8a_A 107 IFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAI 186 (274)
T ss_dssp EEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHH
T ss_pred EeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHH
Confidence 999999753110 00 0001111 1123345567776554443 1 2345788999999999999
Q ss_pred HHHHhC
Q 039180 271 FKIIAG 276 (790)
Q Consensus 271 f~~~~~ 276 (790)
++....
T Consensus 187 l~~~~~ 192 (274)
T 2x8a_A 187 LKTITK 192 (274)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 988764
No 230
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.31 E-value=0.024 Score=58.82 Aligned_cols=90 Identities=17% Similarity=0.230 Sum_probs=56.1
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhcc----CCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCc-------------h
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDE----LYDMVVFSEVTQSPDIKQIQQEIAEKLGLELS-------------E 189 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------------~ 189 (790)
.-.++.|+|.+|+||||+|.+++....... .-..++|++....++...+.+ ++..++.... .
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCH
Confidence 346899999999999999999987642211 134689999988888776554 4455554321 0
Q ss_pred hHHHHHHHHHHHHHHc--CCcEEEEEeCCC
Q 039180 190 EAEFRRASRMFERLKN--EKKILLILDNTW 217 (790)
Q Consensus 190 ~~~~~~~~~l~~~l~~--~kr~LlVlDdv~ 217 (790)
....+.+..+...+.+ .+.-+||+|.+.
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~ 229 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIM 229 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechH
Confidence 1111222333333433 455688888873
No 231
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.30 E-value=0.031 Score=57.92 Aligned_cols=50 Identities=18% Similarity=0.130 Sum_probs=36.6
Q ss_pred ceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCcHHHHHH
Q 039180 255 KNFSIGILNEQEAWRLFKIIAGAYVENRELKSTATSVAKACRGLPIALTIV 305 (790)
Q Consensus 255 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 305 (790)
....+++.+.++-.+++.+.+..... ....+.+..|++.+.|.|..+..+
T Consensus 173 l~~~Ld~~~~~~l~~iL~~~~~~~~~-~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 173 IILELDFYTVKELKEIIKRAASLMDV-EIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred ceeeCCCCCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHhcCCChHHHHHH
Confidence 36889999999999999887642211 223567888999999999755443
No 232
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.29 E-value=0.021 Score=60.28 Aligned_cols=89 Identities=15% Similarity=0.214 Sum_probs=56.2
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhc----cCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCc-------------hh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIED----ELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELS-------------EE 190 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------------~~ 190 (790)
-.++.|+|.+|+|||||+..++-..... ..-..++|++....+....+. .+++.++.... ..
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCCChHhHhhcEEEeccCChH
Confidence 3589999999999999999876443221 123568999888777666543 36666665321 01
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEeCCC
Q 039180 191 AEFRRASRMFERLKNEKKILLILDNTW 217 (790)
Q Consensus 191 ~~~~~~~~l~~~l~~~kr~LlVlDdv~ 217 (790)
.....+..+...+...+.-+||+|.+.
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchh
Confidence 112233444444544567788999873
No 233
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.26 E-value=0.024 Score=58.40 Aligned_cols=90 Identities=18% Similarity=0.296 Sum_probs=57.4
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhcc----CCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCch-------------h
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDE----LYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSE-------------E 190 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------------~ 190 (790)
-.++.|+|.+|+||||+|.+++....... .-..++|++....++...+.+ +++.++.+... .
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHH
Confidence 35899999999999999999987642211 024689999988887776654 45566543210 1
Q ss_pred HHHHHHHHHHHHHHc-CCcEEEEEeCCCC
Q 039180 191 AEFRRASRMFERLKN-EKKILLILDNTWK 218 (790)
Q Consensus 191 ~~~~~~~~l~~~l~~-~kr~LlVlDdv~~ 218 (790)
...+.+..+...+.+ .+.-+||+|.+..
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 111223344444444 4567888888743
No 234
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.25 E-value=0.017 Score=59.80 Aligned_cols=84 Identities=20% Similarity=0.247 Sum_probs=53.4
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCch------hHHHHHHHHHHHH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSE------EAEFRRASRMFER 202 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~~~ 202 (790)
.++.|.|++|+||||||.+++...... -..++|++....++.. .++.++..... ....+.+..+...
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~--gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l 134 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKM--GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDEL 134 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHHH
Confidence 589999999999999999999876433 2347889888777754 45556554221 1112222222222
Q ss_pred HHcCCcEEEEEeCCCCc
Q 039180 203 LKNEKKILLILDNTWKS 219 (790)
Q Consensus 203 l~~~kr~LlVlDdv~~~ 219 (790)
+...+.-++|+|.+...
T Consensus 135 ~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 135 VRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHTSCCSEEEEECTTTC
T ss_pred hhhcCCCeEEehHhhhh
Confidence 33345568899998554
No 235
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.21 E-value=0.028 Score=57.94 Aligned_cols=89 Identities=17% Similarity=0.221 Sum_probs=55.8
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhcc---------CC-----CEEEEEEeCCCCCHHHHHHHHHHHhCCCCch----
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDE---------LY-----DMVVFSEVTQSPDIKQIQQEIAEKLGLELSE---- 189 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~---------~f-----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---- 189 (790)
-.++.|+|.+|+||||+|.+++....... .. ..++|++....++...+.+. ++.++.+...
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHAGIDGQTVLDN 176 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHHTCCHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHcCCCHHHHhcC
Confidence 46899999999999999999987632110 11 46899999988877776643 4556543210
Q ss_pred ---------hHHHHHHHHHHHHHHc-CCcEEEEEeCCC
Q 039180 190 ---------EAEFRRASRMFERLKN-EKKILLILDNTW 217 (790)
Q Consensus 190 ---------~~~~~~~~~l~~~l~~-~kr~LlVlDdv~ 217 (790)
+...+.+..+...+.+ .+.-+||+|.+.
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 1111123334444444 455688888874
No 236
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.20 E-value=0.0043 Score=62.61 Aligned_cols=68 Identities=15% Similarity=0.179 Sum_probs=41.9
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEe--CCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcC
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEV--TQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNE 206 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 206 (790)
+++.|+|++|+|||+||.+++.. . . ..+.|+++ .+..+. .. ......+..+.+.+.+
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~-~-G---~~VlyIs~~~eE~v~~-------------~~--~~le~~l~~i~~~l~~- 182 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA-L-G---GKDKYATVRFGEPLSG-------------YN--TDFNVFVDDIARAMLQ- 182 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH-H-H---TTSCCEEEEBSCSSTT-------------CB--CCHHHHHHHHHHHHHH-
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh-C-C---CCEEEEEecchhhhhh-------------hh--cCHHHHHHHHHHHHhh-
Confidence 46789999999999999999876 1 1 12455666 332110 00 1122334455566655
Q ss_pred CcEEEEEeCCCC
Q 039180 207 KKILLILDNTWK 218 (790)
Q Consensus 207 kr~LlVlDdv~~ 218 (790)
.+ +||+|++..
T Consensus 183 ~~-LLVIDsI~a 193 (331)
T 2vhj_A 183 HR-VIVIDSLKN 193 (331)
T ss_dssp CS-EEEEECCTT
T ss_pred CC-EEEEecccc
Confidence 44 999999854
No 237
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.08 E-value=0.0014 Score=65.92 Aligned_cols=126 Identities=19% Similarity=0.178 Sum_probs=66.2
Q ss_pred EEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCCcEE
Q 039180 131 IGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEKKIL 210 (790)
Q Consensus 131 v~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~L 210 (790)
+.++|++|+|||++|+.+++..... |- .+..+.-.+. ..+.... .+..+++.....+..+
T Consensus 47 vll~G~~GtGKT~la~~la~~~~~~--~~---~v~~~~~~~~---------~~~~~~~------~~~~~~~~a~~~~~~v 106 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAHVP--FF---SMGGSSFIEM---------FVGLGAS------RVRDLFETAKKQAPSI 106 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHTCC--CC---CCCSCTTTTS---------CSSSCSS------SSSTTHHHHHHSCSCE
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCC--EE---EechHHHHHh---------hcchHHH------HHHHHHHHHHhcCCeE
Confidence 7799999999999999999876422 21 1121111000 0000000 0112223333335689
Q ss_pred EEEeCCCCcc-----------------CccccCccCCC---CCCCcEEEEEeCChhHHh-h-hC---CCceEEccCCCHH
Q 039180 211 LILDNTWKSL-----------------DLGTIGIPFGV---EHRGCKLLFTTRDLDVLI-R-MG---SEKNFSIGILNEQ 265 (790)
Q Consensus 211 lVlDdv~~~~-----------------~~~~l~~~~~~---~~~gs~iliTtR~~~v~~-~-~~---~~~~~~l~~L~~~ 265 (790)
|++||++... ....+...+.. ......||.||....... . .. ....+.+...+.+
T Consensus 107 l~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~ 186 (268)
T 2r62_A 107 IFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFN 186 (268)
T ss_dssp EEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTT
T ss_pred EEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHH
Confidence 9999996431 12222222211 112245666776543221 1 11 2346788888888
Q ss_pred HHHHHHHHHhC
Q 039180 266 EAWRLFKIIAG 276 (790)
Q Consensus 266 ~~~~Lf~~~~~ 276 (790)
+-.+++...+.
T Consensus 187 ~r~~il~~~~~ 197 (268)
T 2r62_A 187 GRVEILKVHIK 197 (268)
T ss_dssp THHHHHHHHTS
T ss_pred HHHHHHHHHHh
Confidence 88888887764
No 238
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.02 E-value=0.003 Score=73.67 Aligned_cols=127 Identities=14% Similarity=0.229 Sum_probs=67.8
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
...+.++|++|+|||++|+.+++..... -...+.++++......... ...+.+.+....
T Consensus 521 ~~~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~~~~~~~~~-------------------~~~l~~~~~~~~ 579 (758)
T 3pxi_A 521 IGSFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSEYMEKHSTS-------------------GGQLTEKVRRKP 579 (758)
T ss_dssp SEEEEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEEGGGGCSSCCCC----------------------CHHHHHHCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEechhcccccccc-------------------cchhhHHHHhCC
Confidence 3479999999999999999999886322 2335566655422110000 001112222223
Q ss_pred cEEEEEeCCCCcc--CccccCccCC-----------CCCCCcEEEEEeCC-----hhH----Hhh-----hCC-CceEEc
Q 039180 208 KILLILDNTWKSL--DLGTIGIPFG-----------VEHRGCKLLFTTRD-----LDV----LIR-----MGS-EKNFSI 259 (790)
Q Consensus 208 r~LlVlDdv~~~~--~~~~l~~~~~-----------~~~~gs~iliTtR~-----~~v----~~~-----~~~-~~~~~l 259 (790)
.-+|+||++.... ....+...+. ......+||+||.. ..+ ... ... ...+.+
T Consensus 580 ~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~ 659 (758)
T 3pxi_A 580 YSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVF 659 (758)
T ss_dssp SSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEEC
T ss_pred CeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEec
Confidence 4588999996541 1111111110 01235678888873 111 111 122 258899
Q ss_pred cCCCHHHHHHHHHHHh
Q 039180 260 GILNEQEAWRLFKIIA 275 (790)
Q Consensus 260 ~~L~~~~~~~Lf~~~~ 275 (790)
.+++.++..+++....
T Consensus 660 ~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 660 HSLEKKHLTEIVSLMS 675 (758)
T ss_dssp C--CHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999888876654
No 239
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.98 E-value=0.0055 Score=57.39 Aligned_cols=111 Identities=14% Similarity=0.061 Sum_probs=64.2
Q ss_pred hccCCceEEEEecCc-ccc-----CCChhhhhccccceeeccCccccccchhh----hhccCcccEEeccCCCCc-----
Q 039180 497 FKGVKKLRVVALVKM-LLS-----SLPSSIYLLVNLQTLCLDQSILRDIDIAI----IGKLKNLKILSFVRSDIV----- 561 (790)
Q Consensus 497 ~~~l~~L~~L~L~~~-~~~-----~lp~~~~~l~~L~~L~L~~~~l~~l~p~~----i~~l~~L~~L~L~~~~l~----- 561 (790)
..+-+.|+.|+|+++ .+. .+...+..-+.|+.|+|++|.+....... +..-+.|++|+|++|.|.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345567888888775 654 24455556677888888888876532222 334466888888888775
Q ss_pred ccchhhhcccccceecCCccc--cccccC----chhhccccccceEecccCC
Q 039180 562 QLPKALGELTKLRLSDLTDCF--HLKVIA----PNVISSLTRLEELYMGNCP 607 (790)
Q Consensus 562 ~lp~~l~~l~~L~~L~l~~~~--~l~~~~----~~~l~~l~~L~~L~l~~~~ 607 (790)
.+-..+..-+.|++|++++|. .++.-. ...+..-+.|..|+++.+.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 233344455567777776542 122110 1123344566677666554
No 240
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.97 E-value=0.0052 Score=55.23 Aligned_cols=39 Identities=23% Similarity=0.379 Sum_probs=29.5
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQ 168 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 168 (790)
-..++|+|..|+|||||++.++...... .+ .++++...+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~ 74 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAAS 74 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHH
Confidence 3578999999999999999999877542 22 256666554
No 241
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.97 E-value=0.0087 Score=68.69 Aligned_cols=151 Identities=14% Similarity=0.164 Sum_probs=85.4
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcC
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNE 206 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 206 (790)
..+=|.++|++|+|||+||+++++.... ..+.++.++ +. ..... .....+..+++.....
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg~-----~~~~v~~~~----------l~----sk~~g-ese~~lr~lF~~A~~~ 296 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETGA-----FFFLINGPE----------IM----SKLAG-ESESNLRKAFEEAEKN 296 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTTC-----EEEEEEHHH----------HH----SSCTT-HHHHHHHHHHHHHTTS
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC-----eEEEEEhHH----------hh----cccch-HHHHHHHHHHHHHHHc
Confidence 3566899999999999999999977532 234444321 11 11111 1223455566666656
Q ss_pred CcEEEEEeCCCCccC--------c-----cccCccCCC--CCCCcEEEEEeCChhHHh-hh----CCCceEEccCCCHHH
Q 039180 207 KKILLILDNTWKSLD--------L-----GTIGIPFGV--EHRGCKLLFTTRDLDVLI-RM----GSEKNFSIGILNEQE 266 (790)
Q Consensus 207 kr~LlVlDdv~~~~~--------~-----~~l~~~~~~--~~~gs~iliTtR~~~v~~-~~----~~~~~~~l~~L~~~~ 266 (790)
.+.+|++|+++.... . ..+...+.. ...+..||.||...+... .+ .-...+++...+.++
T Consensus 297 ~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~ 376 (806)
T 3cf2_A 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376 (806)
T ss_dssp CSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHH
T ss_pred CCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHH
Confidence 789999999875411 0 001000100 112334555665533222 22 123578899899999
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHHhcCCc
Q 039180 267 AWRLFKIIAGAYVENRELKSTATSVAKACRGLP 299 (790)
Q Consensus 267 ~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 299 (790)
-.++|+.+........+. ....|++++.|.-
T Consensus 377 R~~IL~~~l~~~~~~~dv--dl~~lA~~T~Gfs 407 (806)
T 3cf2_A 377 RLEILQIHTKNMKLADDV--DLEQVANETHGHV 407 (806)
T ss_dssp HHHHHHHTCSSSEECTTC--CHHHHHHHCCSCC
T ss_pred HHHHHHHHhcCCCCCccc--CHHHHHHhcCCCC
Confidence 999998776533222211 1456777888754
No 242
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.96 E-value=0.057 Score=52.31 Aligned_cols=90 Identities=23% Similarity=0.288 Sum_probs=52.8
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhc---c-CCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCc-------------hh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIED---E-LYDMVVFSEVTQSPDIKQIQQEIAEKLGLELS-------------EE 190 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------------~~ 190 (790)
=.+++|+|++|+|||||++.++...... . .-..++|+.......... ...+++..+.... ..
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNSN 103 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTSCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCCCHHHHhhcEEEEecCChH
Confidence 3689999999999999999998754321 0 134578887766544443 3344444443211 11
Q ss_pred HHHHHHHHHHHHHH-----cCCcEEEEEeCCCC
Q 039180 191 AEFRRASRMFERLK-----NEKKILLILDNTWK 218 (790)
Q Consensus 191 ~~~~~~~~l~~~l~-----~~kr~LlVlDdv~~ 218 (790)
........+...+. ..+.-++|+|....
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 136 (231)
T 4a74_A 104 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 136 (231)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSH
T ss_pred HHHHHHHHHHHHHHHhcccCCceeEEEECChHH
Confidence 11112233333333 44667889998754
No 243
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.93 E-value=0.056 Score=53.38 Aligned_cols=147 Identities=16% Similarity=0.188 Sum_probs=78.0
Q ss_pred EEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCCcEE
Q 039180 131 IGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEKKIL 210 (790)
Q Consensus 131 v~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~L 210 (790)
+.|+|+.|+||||||+.++..... ..+.++.. . +.... .. .....+..+++........+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~-----~~i~~~~~------~----~~~~~----~~-~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARV-----PFITASGS------D----FVEMF----VG-VGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEHH------H----HHHSC----TT-HHHHHHHHHHHHHTTSSSEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC-----CEEEeeHH------H----HHHHH----hh-HHHHHHHHHHHHHHhcCCeE
Confidence 899999999999999999987631 12333321 1 11110 00 11123444555554335689
Q ss_pred EEEeCCCCccC----------------ccccCccCCCCC--CCcEEEEEeCChhHHhh--h---CCCceEEccCCCHHHH
Q 039180 211 LILDNTWKSLD----------------LGTIGIPFGVEH--RGCKLLFTTRDLDVLIR--M---GSEKNFSIGILNEQEA 267 (790)
Q Consensus 211 lVlDdv~~~~~----------------~~~l~~~~~~~~--~gs~iliTtR~~~v~~~--~---~~~~~~~l~~L~~~~~ 267 (790)
+++|+++.... ...+...+..+. ...-++.||...++... . .-...+.+...+.++-
T Consensus 112 ~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r 191 (254)
T 1ixz_A 112 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR 191 (254)
T ss_dssp EEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHH
T ss_pred EEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHH
Confidence 99999843210 011111111111 22335556666544333 1 2335788999999888
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHHhcCCc
Q 039180 268 WRLFKIIAGAYVENRELKSTATSVAKACRGLP 299 (790)
Q Consensus 268 ~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 299 (790)
.++++..+.......+. ....+++.+.|.-
T Consensus 192 ~~il~~~~~~~~~~~~~--~~~~la~~~~G~~ 221 (254)
T 1ixz_A 192 EQILRIHARGKPLAEDV--DLALLAKRTPGFV 221 (254)
T ss_dssp HHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred HHHHHHHHcCCCCCccc--CHHHHHHHcCCCC
Confidence 88888766432211111 1334666676643
No 244
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.79 E-value=0.056 Score=54.23 Aligned_cols=147 Identities=16% Similarity=0.201 Sum_probs=78.6
Q ss_pred EEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCCcEE
Q 039180 131 IGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEKKIL 210 (790)
Q Consensus 131 v~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~L 210 (790)
+.|+|+.|+||||||+.++..... ..+.+... . +.... . ......+..+++........+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~-----~~i~~~~~------~----~~~~~----~-~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARV-----PFITASGS------D----FVEMF----V-GVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEHH------H----HHHST----T-THHHHHHHHHHHHHHTSCSEE
T ss_pred EEEECCCcChHHHHHHHHHHHcCC-----CEEEecHH------H----HHHHH----h-hHHHHHHHHHHHHHHhcCCcE
Confidence 899999999999999999987631 23333321 1 11110 0 011123444555554335689
Q ss_pred EEEeCCCCcc------------C----ccccCccCCCCCC--CcEEEEEeCChhHHhh--h---CCCceEEccCCCHHHH
Q 039180 211 LILDNTWKSL------------D----LGTIGIPFGVEHR--GCKLLFTTRDLDVLIR--M---GSEKNFSIGILNEQEA 267 (790)
Q Consensus 211 lVlDdv~~~~------------~----~~~l~~~~~~~~~--gs~iliTtR~~~v~~~--~---~~~~~~~l~~L~~~~~ 267 (790)
+++|+++... . ...+...+..+.. ...++.||...++... . .....+.+...+.++-
T Consensus 136 ~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r 215 (278)
T 1iy2_A 136 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR 215 (278)
T ss_dssp EEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHH
T ss_pred EehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHH
Confidence 9999985321 0 0111111111111 2334456665443332 1 2345788999999988
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHHhcCCc
Q 039180 268 WRLFKIIAGAYVENRELKSTATSVAKACRGLP 299 (790)
Q Consensus 268 ~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 299 (790)
.+++...+.......+. ....++..+.|..
T Consensus 216 ~~il~~~~~~~~~~~~~--~~~~la~~~~G~~ 245 (278)
T 1iy2_A 216 EQILRIHARGKPLAEDV--DLALLAKRTPGFV 245 (278)
T ss_dssp HHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred HHHHHHHHccCCCCccc--CHHHHHHHcCCCC
Confidence 88888776432211111 1335667777754
No 245
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.77 E-value=0.0056 Score=61.24 Aligned_cols=38 Identities=11% Similarity=0.073 Sum_probs=26.9
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCC
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQ 168 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 168 (790)
.-|.|+|..|+|||++|+.+++..... -...+.++++.
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~~--~~~~~~v~~~~ 67 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAA 67 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTTT--TSCEEEEEGGG
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCcc--CCCeEEEecCC
Confidence 357799999999999999999765322 12245566554
No 246
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.74 E-value=0.34 Score=51.47 Aligned_cols=29 Identities=34% Similarity=0.371 Sum_probs=25.6
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhc
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIED 155 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~ 155 (790)
...+|.++|.+|+||||++..++.....+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 57899999999999999999999887644
No 247
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.73 E-value=0.034 Score=54.01 Aligned_cols=46 Identities=22% Similarity=0.387 Sum_probs=31.9
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQE 178 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 178 (790)
.+++|+|.+|+|||||++.++....... ..++|+.... ....+...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~--~~v~~~~~~~--~~~~~~~~ 69 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDG--DPCIYVTTEE--SRDSIIRQ 69 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHT--CCEEEEESSS--CHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCC--CeEEEEEccc--CHHHHHHH
Confidence 5899999999999999999987654331 2466766544 34444433
No 248
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.72 E-value=0.031 Score=57.94 Aligned_cols=84 Identities=20% Similarity=0.261 Sum_probs=52.9
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCch-----hHHHHHHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSE-----EAEFRRASRMFER 202 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 202 (790)
-.++.|+|.+|+||||||.+++...... -..++|++....++.. .++.++..... ....+.+..+.+.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 4689999999999999999998765432 2358899988777653 35556544221 1111222223333
Q ss_pred HH-cCCcEEEEEeCCCC
Q 039180 203 LK-NEKKILLILDNTWK 218 (790)
Q Consensus 203 l~-~~kr~LlVlDdv~~ 218 (790)
+. +.+.-+||+|.+..
T Consensus 134 l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHTTTCCSEEEEECGGG
T ss_pred HHhcCCCCEEEEcChHh
Confidence 32 33456899999843
No 249
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.71 E-value=0.0012 Score=59.06 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHh
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
-|.|+|..|+|||++|+.+++..
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCTT
T ss_pred cEEEECCCCccHHHHHHHHHHhC
Confidence 37799999999999999987653
No 250
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.57 E-value=0.037 Score=60.07 Aligned_cols=95 Identities=8% Similarity=-0.017 Sum_probs=54.1
Q ss_pred EEEEeCCCCc--cCccccCccCCCCCCCcEEEEEe----------C----ChhHH-hhhCCCceEEccCCCHHHHHHHHH
Q 039180 210 LLILDNTWKS--LDLGTIGIPFGVEHRGCKLLFTT----------R----DLDVL-IRMGSEKNFSIGILNEQEAWRLFK 272 (790)
Q Consensus 210 LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTt----------R----~~~v~-~~~~~~~~~~l~~L~~~~~~~Lf~ 272 (790)
++++|++... +..+.+...+...... .+|+.| . ...+. ........+.+.+++.++..+++.
T Consensus 298 VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~ 376 (456)
T 2c9o_A 298 VLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIK 376 (456)
T ss_dssp EEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred EEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHHH
Confidence 8999999755 2344443333222223 344344 2 11111 123444568999999999999998
Q ss_pred HHhCCCCCCcchHHHHHHHHHHh-cCCcHHHHHHH
Q 039180 273 IIAGAYVENRELKSTATSVAKAC-RGLPIALTIVV 306 (790)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~i~~~~-~glPlai~~~~ 306 (790)
..+..... .-.++....|++.+ .|.|.....+.
T Consensus 377 ~~~~~~~~-~~~~~~~~~i~~~a~~g~~r~a~~ll 410 (456)
T 2c9o_A 377 IRAQTEGI-NISEEALNHLGEIGTKTTLRYSVQLL 410 (456)
T ss_dssp HHHHHHTC-CBCHHHHHHHHHHHHHSCHHHHHHTH
T ss_pred HHHHHhCC-CCCHHHHHHHHHHccCCCHHHHHHHH
Confidence 87631111 12245667788888 78887544443
No 251
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.55 E-value=0.043 Score=57.16 Aligned_cols=85 Identities=22% Similarity=0.228 Sum_probs=53.4
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCch-----hHHHHHHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSE-----EAEFRRASRMFER 202 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 202 (790)
-.++.|.|.+|+||||+|.+++...... -..++|++....++.. .++.++.+... ....+.+..+.+.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 3578999999999999999988775432 2368999998877654 24555543221 1111222233333
Q ss_pred HH-cCCcEEEEEeCCCCc
Q 039180 203 LK-NEKKILLILDNTWKS 219 (790)
Q Consensus 203 l~-~~kr~LlVlDdv~~~ 219 (790)
+. .+.--+||+|.+...
T Consensus 147 l~~~~~~~lVVIDsl~~l 164 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAAL 164 (366)
T ss_dssp HHTTTCCSEEEEECTTTC
T ss_pred HHhcCCCCEEEEeChHHh
Confidence 33 334568999998543
No 252
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.55 E-value=0.027 Score=65.59 Aligned_cols=127 Identities=14% Similarity=0.159 Sum_probs=66.5
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhcc-CC---C-EEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDE-LY---D-MVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFER 202 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~-~f---~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~ 202 (790)
..-+.++|++|+|||++|+.++....... .+ . .++.++. +..... .-...+..+++.
T Consensus 201 ~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-----------------g~~~~G-~~e~~l~~~~~~ 262 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-----------------GTKYRG-EFEDRLKKVMDE 262 (758)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------------------CTTHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-----------------cccccc-hHHHHHHHHHHH
Confidence 34478999999999999999998863211 00 1 1222222 000000 001123445555
Q ss_pred HHcCCcEEEEEeCCCCccCccccCccCCCCCCCcEEEEEeCChhHHh------h-hCCCceEEccCCCHHHHHHHHHHHh
Q 039180 203 LKNEKKILLILDNTWKSLDLGTIGIPFGVEHRGCKLLFTTRDLDVLI------R-MGSEKNFSIGILNEQEAWRLFKIIA 275 (790)
Q Consensus 203 l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtR~~~v~~------~-~~~~~~~~l~~L~~~~~~~Lf~~~~ 275 (790)
....++.+|++|. .......+...+. ....++|.||....... . ......+.++..+.++..+++....
T Consensus 263 ~~~~~~~iLfiD~--~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 263 IRQAGNIILFIDA--AIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HHTCCCCEEEECC----------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHhcCCEEEEEcC--chhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 5555678999992 2222222333332 22345666665443111 1 1223579999999999999998655
Q ss_pred C
Q 039180 276 G 276 (790)
Q Consensus 276 ~ 276 (790)
.
T Consensus 339 ~ 339 (758)
T 3pxi_A 339 D 339 (758)
T ss_dssp T
T ss_pred H
Confidence 3
No 253
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.53 E-value=0.042 Score=57.05 Aligned_cols=83 Identities=22% Similarity=0.308 Sum_probs=52.2
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCch-----hHHHHHHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSE-----EAEFRRASRMFER 202 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 202 (790)
-.++.|.|.+|+||||||.+++...... -..++|++....++.. .++.++..... ....+.+..+.+.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 4589999999999999999988775433 2358899998877744 24555543211 0111222233333
Q ss_pred H-HcCCcEEEEEeCCC
Q 039180 203 L-KNEKKILLILDNTW 217 (790)
Q Consensus 203 l-~~~kr~LlVlDdv~ 217 (790)
+ ...+.-+||+|.+.
T Consensus 136 l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 136 LARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHTCCSEEEEECGG
T ss_pred HHhccCCCEEEEcCHH
Confidence 3 23344589999974
No 254
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.51 E-value=0.063 Score=55.76 Aligned_cols=92 Identities=24% Similarity=0.283 Sum_probs=53.8
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhh--cc-C-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCc-------------h
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIE--DE-L-YDMVVFSEVTQSPDIKQIQQEIAEKLGLELS-------------E 189 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~--~~-~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------------~ 189 (790)
.=.++.|+|..|+|||||+..++..... .. . -..++|++....+....+ ..+++..+.... .
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 3468999999999999999999876521 11 0 124689988766554443 334554433211 1
Q ss_pred hHHHHHHHHHHHHHHc-----CCcEEEEEeCCCCc
Q 039180 190 EAEFRRASRMFERLKN-----EKKILLILDNTWKS 219 (790)
Q Consensus 190 ~~~~~~~~~l~~~l~~-----~kr~LlVlDdv~~~ 219 (790)
....+.+..+...+.+ .+.-+||+|.+...
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 1111223333333332 46779999998554
No 255
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.48 E-value=0.015 Score=50.72 Aligned_cols=55 Identities=20% Similarity=0.225 Sum_probs=35.7
Q ss_pred EEEecCcccc--CCChhhhhccccceeeccCccccccchhhhhccCcccEEeccCCCCc
Q 039180 505 VVALVKMLLS--SLPSSIYLLVNLQTLCLDQSILRDIDIAIIGKLKNLKILSFVRSDIV 561 (790)
Q Consensus 505 ~L~L~~~~~~--~lp~~~~~l~~L~~L~L~~~~l~~l~p~~i~~l~~L~~L~L~~~~l~ 561 (790)
.++.+++.++ .+|..+. .+|++|+|++|.|+.+.+..|..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666666 6664432 35677777777777765556667777777777777543
No 256
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.43 E-value=0.017 Score=67.42 Aligned_cols=83 Identities=13% Similarity=0.180 Sum_probs=46.1
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcC
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNE 206 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 206 (790)
....+.++|++|+|||++|+.+++... ...+.++++....... +.+.++.+.. ....+....+.+.+...
T Consensus 487 p~~~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~~~~~~~----~~~l~g~~~g-~~g~~~~~~l~~~~~~~ 556 (758)
T 1r6b_X 487 PVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERHT----VSRLIGAPPG-YVGFDQGGLLTDAVIKH 556 (758)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGCSSSSC----CSSSCCCCSC-SHHHHHTTHHHHHHHHC
T ss_pred CceEEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechhhcchhh----HhhhcCCCCC-CcCccccchHHHHHHhC
Confidence 345799999999999999999998762 3355666554322100 0011111111 11111111233344444
Q ss_pred CcEEEEEeCCCCc
Q 039180 207 KKILLILDNTWKS 219 (790)
Q Consensus 207 kr~LlVlDdv~~~ 219 (790)
...+|+||+++..
T Consensus 557 ~~~vl~lDEi~~~ 569 (758)
T 1r6b_X 557 PHAVLLLDEIEKA 569 (758)
T ss_dssp SSEEEEEETGGGS
T ss_pred CCcEEEEeCcccc
Confidence 5689999999754
No 257
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.36 E-value=0.12 Score=53.53 Aligned_cols=155 Identities=10% Similarity=-0.045 Sum_probs=96.3
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
.++..++|..|.||++.+..+....... .|+....+.+....+..++...+... -+ .++
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------pl-f~~ 76 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSIDPNTDWNAIFSLCQAM-------------------SL-FAS 76 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHH-TCCEEEEEECCTTCCHHHHHHHHHHH-------------------HH-CCS
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhC-CCCeeEEEEecCCCCHHHHHHHhcCc-------------------CC-ccC
Confidence 4789999999999999999998876433 35432222333334444433322110 01 245
Q ss_pred cEEEEEeCCCC-c--cCccccCccCCCCCCCcEEEEEeCC-------hhHHhh-hCCCceEEccCCCHHHHHHHHHHHhC
Q 039180 208 KILLILDNTWK-S--LDLGTIGIPFGVEHRGCKLLFTTRD-------LDVLIR-MGSEKNFSIGILNEQEAWRLFKIIAG 276 (790)
Q Consensus 208 r~LlVlDdv~~-~--~~~~~l~~~~~~~~~gs~iliTtR~-------~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~ 276 (790)
+-++|+|++.. . ..++.+...+....+++.+|++|.. ..+... ......++..+++.++..+.+.+.+.
T Consensus 77 ~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~ 156 (343)
T 1jr3_D 77 RQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAK 156 (343)
T ss_dssp CEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHH
Confidence 67899999865 3 3445554444444457777776643 234444 34457899999999999888877764
Q ss_pred CCCCCcchHHHHHHHHHHhcCCcHHHHH
Q 039180 277 AYVENRELKSTATSVAKACRGLPIALTI 304 (790)
Q Consensus 277 ~~~~~~~~~~~~~~i~~~~~glPlai~~ 304 (790)
.... .-..+.+..+++.++|...++..
T Consensus 157 ~~g~-~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 157 QLNL-ELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HTTC-EECHHHHHHHHHSSTTCHHHHHH
T ss_pred HcCC-CCCHHHHHHHHHHhchHHHHHHH
Confidence 2221 12245677888888987776554
No 258
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.30 E-value=0.042 Score=55.59 Aligned_cols=86 Identities=17% Similarity=0.134 Sum_probs=46.4
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHc
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQS-PDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKN 205 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 205 (790)
.-++++++|.+|+||||++..++.....+... .+..+..... ....+.+....+..+.+.........+......+ .
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~ 181 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-KIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-S 181 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-CEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-G
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-EEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-c
Confidence 35799999999999999999999877642222 3555555432 2233333444444443321111111222233333 2
Q ss_pred CCcEEEEEeC
Q 039180 206 EKKILLILDN 215 (790)
Q Consensus 206 ~kr~LlVlDd 215 (790)
..=++|+|-
T Consensus 182 -~~dlvIiDT 190 (296)
T 2px0_A 182 -EYDHVFVDT 190 (296)
T ss_dssp -GSSEEEEEC
T ss_pred -CCCEEEEeC
Confidence 234778884
No 259
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.30 E-value=0.037 Score=60.18 Aligned_cols=173 Identities=16% Similarity=0.188 Sum_probs=88.5
Q ss_pred EEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCCcEE
Q 039180 131 IGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEKKIL 210 (790)
Q Consensus 131 v~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~L 210 (790)
|.|+|++|+||||||+.++..... ..+.++.++-.. ..... ....+..+++........+
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~~-----~~i~i~g~~~~~--------------~~~g~-~~~~v~~lfq~a~~~~p~i 126 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEARV-----PFITASGSDFVE--------------MFVGV-GAARVRDLFETAKRHAPCI 126 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTTC-----CEEEEEGGGGTS--------------SCTTH-HHHHHHHHTTTSSSSSSCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC-----CEEEEehhHHHH--------------hhhhh-HHHHHHHHHHHHHhcCCCE
Confidence 899999999999999999987631 234454432111 00000 1111222222222223579
Q ss_pred EEEeCCCCccC----------------ccccCccCCC--CCCCcEEEEEeCChhHHhh--h---CCCceEEccCCCHHHH
Q 039180 211 LILDNTWKSLD----------------LGTIGIPFGV--EHRGCKLLFTTRDLDVLIR--M---GSEKNFSIGILNEQEA 267 (790)
Q Consensus 211 lVlDdv~~~~~----------------~~~l~~~~~~--~~~gs~iliTtR~~~v~~~--~---~~~~~~~l~~L~~~~~ 267 (790)
+++|+++.... ...+...+.. ...+..|+.||...++.+. . .....+.+...+.++-
T Consensus 127 l~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R 206 (499)
T 2dhr_A 127 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR 206 (499)
T ss_dssp EEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHH
T ss_pred EEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHH
Confidence 99999954311 0111111111 1223445556666554332 1 1235788999999988
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHHhcCCc-HHHHHHH---HHHh---c--C-ChhHHHHHHHHhc
Q 039180 268 WRLFKIIAGAYVENRELKSTATSVAKACRGLP-IALTIVV---KALR---N--K-ELPEWKNALQELQ 325 (790)
Q Consensus 268 ~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~~~---~~l~---~--~-~~~~w~~~l~~l~ 325 (790)
.+++..++......++. ....|+..+.|.. -.+..+. ..+. + . +.++.+.+++...
T Consensus 207 ~~IL~~~~~~~~l~~dv--~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~ 272 (499)
T 2dhr_A 207 EQILRIHARGKPLAEDV--DLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADRVM 272 (499)
T ss_dssp HHHHHHTTSSSCCCCSS--TTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCChHH--HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHh
Confidence 88887766432211111 1345677777765 2332221 1221 1 1 4566666666643
No 260
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.28 E-value=0.3 Score=51.80 Aligned_cols=39 Identities=28% Similarity=0.238 Sum_probs=29.9
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeC
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVT 167 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~ 167 (790)
...+|.++|.+|+||||++..++...+.++ . .+..+++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G-~-kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG-Y-KVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTT-C-CEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC-C-eEEEEecC
Confidence 478999999999999999999998876542 2 34445544
No 261
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.26 E-value=0.017 Score=58.89 Aligned_cols=38 Identities=21% Similarity=0.229 Sum_probs=28.7
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhh-hccCCCEEEEEEeC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAI-EDELYDMVVFSEVT 167 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~-~~~~f~~~~wv~~~ 167 (790)
.+-+.++|+.|+|||+||..+++... .. .+ .+++++++
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~-g~-~v~~~~~~ 190 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKK-GV-STTLLHFP 190 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHS-CC-CEEEEEHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhc-CC-cEEEEEHH
Confidence 46788999999999999999999875 33 22 35555543
No 262
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.26 E-value=0.81 Score=46.01 Aligned_cols=87 Identities=21% Similarity=0.214 Sum_probs=50.2
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCC-HHHHHHHHHHHhCCCCch----hHHHHHHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPD-IKQIQQEIAEKLGLELSE----EAEFRRASRMFER 202 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~----~~~~~~~~~l~~~ 202 (790)
..+++++|.+|+||||++..++......+ ..+.++....... ..+.++...+..+.+... .+....+....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g--~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKG--FKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTT--CCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 67999999999999999999998775432 2356666554322 223334445555543211 1122233445555
Q ss_pred HHcCCcEEEEEeCC
Q 039180 203 LKNEKKILLILDNT 216 (790)
Q Consensus 203 l~~~kr~LlVlDdv 216 (790)
+....-=++|+|-.
T Consensus 176 ~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 176 FLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 54222236777875
No 263
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.06 E-value=0.061 Score=57.36 Aligned_cols=87 Identities=24% Similarity=0.438 Sum_probs=51.0
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCC-CHHHHHHHHHHHhCC--------CCchhHHHH-----H
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSP-DIKQIQQEIAEKLGL--------ELSEEAEFR-----R 195 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~--------~~~~~~~~~-----~ 195 (790)
.++|+|.+|+|||||+..+........ -+..+++.+.+.. ...++..++...-.. ...+..... .
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~~-~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~~ 231 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEH-GGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALT 231 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHT-CCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhcc-CcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHHH
Confidence 588999999999999999988765432 2344566666544 344455445432100 001111111 1
Q ss_pred HHHHHHHHH--cCCcEEEEEeCCC
Q 039180 196 ASRMFERLK--NEKKILLILDNTW 217 (790)
Q Consensus 196 ~~~l~~~l~--~~kr~LlVlDdv~ 217 (790)
...+.+.+. +++++|+++||+.
T Consensus 232 ~ltiAEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 232 GLTMAEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp HHHHHHHHHHHSCCEEEEEEECTH
T ss_pred HHHHHHHHHHhcCCcEEEEeccHH
Confidence 123444444 3899999999984
No 264
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.01 E-value=0.029 Score=52.20 Aligned_cols=112 Identities=20% Similarity=0.136 Sum_probs=62.6
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCC---CCHHHHHHHHHHHhCC---------CCch---hHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQS---PDIKQIQQEIAEKLGL---------ELSE---EAE 192 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~---------~~~~---~~~ 192 (790)
...|-|++-.|.||||+|...+-+....+ + .+..+..-+. .....+++. ++. .... +.+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G-~-rV~~vQF~Kg~~~~gE~~~l~~----L~v~~~~~g~gf~~~~~~~~~~ 101 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHG-K-NVGVVQFIKGTWPNGERNLLEP----HGVEFQVMATGFTWETQNREAD 101 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTT-C-CEEEEESSCCSSCCHHHHHHGG----GTCEEEECCTTCCCCGGGHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEEeeCCCCCccHHHHHHh----CCcEEEEcccccccCCCCcHHH
Confidence 45677777778999999999888765442 2 3555544332 233333333 321 1111 111
Q ss_pred H----HHHHHHHHHHHcCCcEEEEEeCCCCc-----cCccccCccCCCCCCCcEEEEEeCCh
Q 039180 193 F----RRASRMFERLKNEKKILLILDNTWKS-----LDLGTIGIPFGVEHRGCKLLFTTRDL 245 (790)
Q Consensus 193 ~----~~~~~l~~~l~~~kr~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~iliTtR~~ 245 (790)
. .......+.+.+++-=|||||++-.. ...+++...+........||+|+|..
T Consensus 102 ~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 102 TAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 1 12334445554556679999998432 23333333343445567799999984
No 265
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.00 E-value=0.014 Score=53.78 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.+|+|.|+.|+||||+|+.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999875
No 266
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.99 E-value=0.013 Score=54.38 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.+|.|+|++|+||||+|+.+....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999875
No 267
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.94 E-value=0.077 Score=61.80 Aligned_cols=134 Identities=13% Similarity=0.162 Sum_probs=73.4
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccC----CCEEE-EEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDEL----YDMVV-FSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFE 201 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~-wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~ 201 (790)
...-+.++|.+|+|||++|+.++........ ....+ .++.+... .+.... ......+..+++
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~------------~~~~~~-g~~e~~l~~~~~ 272 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL------------AGTKYR-GDFEKRFKALLK 272 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---------------CCCCCS-SCHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh------------cccccc-chHHHHHHHHHH
Confidence 4455789999999999999999987633211 12222 22222110 000111 112233445556
Q ss_pred HHHcCCcEEEEEeCCCCcc--------C---ccccCccCCCCCCCcEEEEEeCChhHHhh-------hCCCceEEccCCC
Q 039180 202 RLKNEKKILLILDNTWKSL--------D---LGTIGIPFGVEHRGCKLLFTTRDLDVLIR-------MGSEKNFSIGILN 263 (790)
Q Consensus 202 ~l~~~kr~LlVlDdv~~~~--------~---~~~l~~~~~~~~~gs~iliTtR~~~v~~~-------~~~~~~~~l~~L~ 263 (790)
.+...++.+|++||+.... . ...+...+. ..+.++|.+|........ ......+.+...+
T Consensus 273 ~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~ 350 (758)
T 1r6b_X 273 QLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPS 350 (758)
T ss_dssp HHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCC
T ss_pred HHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCC
Confidence 6655457999999997551 1 112322221 234456666654432211 1122368899999
Q ss_pred HHHHHHHHHHHh
Q 039180 264 EQEAWRLFKIIA 275 (790)
Q Consensus 264 ~~~~~~Lf~~~~ 275 (790)
.++..+++....
T Consensus 351 ~~e~~~il~~l~ 362 (758)
T 1r6b_X 351 IEETVQIINGLK 362 (758)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998887654
No 268
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.92 E-value=0.029 Score=57.84 Aligned_cols=86 Identities=16% Similarity=0.191 Sum_probs=48.6
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhcc-CCCEEEEEEeCCCCC-HHHHHHHHHHHhCCC-----CchhHHH-----HH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDE-LYDMVVFSEVTQSPD-IKQIQQEIAEKLGLE-----LSEEAEF-----RR 195 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~-~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~-----~~~~~~~-----~~ 195 (790)
=..++|+|..|+|||||++.+......+. .++ ++++-+++... +.++ .+.+... .+..... ..
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~Ev~~~----~~~~~~~vV~atadep~~~r~~~a~~ 248 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEVTEM----QRLVKGEVVASTFDEPASRHVQVAEM 248 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHHHHHH----HTTCSSEEEEECTTSCHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHHHHHH----HHHhCeEEEEeCCCCCHHHHHHHHHH
Confidence 35789999999999999999887654321 233 44566765432 2222 2222110 0111111 11
Q ss_pred HHHHHHHHH-cCCcEEEEEeCCCC
Q 039180 196 ASRMFERLK-NEKKILLILDNTWK 218 (790)
Q Consensus 196 ~~~l~~~l~-~~kr~LlVlDdv~~ 218 (790)
.-.+.+.+. +|+.+||++||+..
T Consensus 249 alt~AEyfrd~G~dVLil~DslTR 272 (422)
T 3ice_A 249 VIEKAKRLVEHKKDVIILLDSITR 272 (422)
T ss_dssp HHHHHHHHHHTSCEEEEEEECHHH
T ss_pred HHHHHHHHHhcCCCEEEEEeCchH
Confidence 122333343 58999999999843
No 269
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.91 E-value=0.026 Score=49.12 Aligned_cols=54 Identities=22% Similarity=0.363 Sum_probs=33.6
Q ss_pred EEeccCCCCc--ccchhhhcccccceecCCccccccccCchhhccccccceEecccCCc
Q 039180 552 ILSFVRSDIV--QLPKALGELTKLRLSDLTDCFHLKVIAPNVISSLTRLEELYMGNCPI 608 (790)
Q Consensus 552 ~L~L~~~~l~--~lp~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 608 (790)
.++.+++.++ .+|..+ -++|++|+|++| .++.++.+.+..+++|+.|+|.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCe
Confidence 4555566665 666432 234667777766 56666666666677777777776654
No 270
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.69 E-value=0.078 Score=52.10 Aligned_cols=38 Identities=26% Similarity=0.281 Sum_probs=26.7
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhh-hccCCCEEEEEEeC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAI-EDELYDMVVFSEVT 167 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~-~~~~f~~~~wv~~~ 167 (790)
=.+++|+|++|+|||||++.++.... .. -..++++...
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~--~~~~~~~~~~ 68 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLE 68 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEEcc
Confidence 36899999999999999999884332 11 2335555543
No 271
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.60 E-value=0.02 Score=54.30 Aligned_cols=25 Identities=48% Similarity=0.533 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.++|+|+|+.|+||||+|+.++...
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999876
No 272
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.58 E-value=0.029 Score=57.27 Aligned_cols=41 Identities=24% Similarity=0.262 Sum_probs=31.7
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCC
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQ 168 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 168 (790)
++.+||+|.|-|||||||.+..++.-+...++ .+.-|++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~Gk--kVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGK--RVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTC--CEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCC--eEEEEecCC
Confidence 47899999999999999999988887765432 366666654
No 273
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.57 E-value=0.019 Score=53.01 Aligned_cols=20 Identities=35% Similarity=0.576 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 039180 129 NIIGVYGMGGIGKTTLVKEF 148 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~ 148 (790)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 274
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.57 E-value=0.098 Score=49.45 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
-.+|+|+|+.|+||||+++.++...
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998775
No 275
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.50 E-value=0.022 Score=53.18 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.+.|.++|+.|+||||+|+.++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999999876
No 276
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.46 E-value=0.038 Score=51.63 Aligned_cols=117 Identities=11% Similarity=0.031 Sum_probs=68.3
Q ss_pred hhhccccceeeccCc-cccccc----hhhhhccCcccEEeccCCCCc-----ccchhhhcccccceecCCccccccccCc
Q 039180 520 IYLLVNLQTLCLDQS-ILRDID----IAIIGKLKNLKILSFVRSDIV-----QLPKALGELTKLRLSDLTDCFHLKVIAP 589 (790)
Q Consensus 520 ~~~l~~L~~L~L~~~-~l~~l~----p~~i~~l~~L~~L~L~~~~l~-----~lp~~l~~l~~L~~L~l~~~~~l~~~~~ 589 (790)
+.+-+.|+.|+|+++ .+.... ...+..-+.|+.|+|++|.|. .+-..+..-+.|++|+|++| .++.-..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga 115 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELL 115 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHH
Confidence 345567899999885 665421 233445577899999998876 34445556677888888887 4543211
Q ss_pred ----hhhccccccceEecccCCc-cchhhcccccccccccccccCCCCCcEEEEEecC
Q 039180 590 ----NVISSLTRLEELYMGNCPI-EWEVERANSERSNSSLDELMNLPWLTTLEIDVKN 642 (790)
Q Consensus 590 ----~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 642 (790)
..+..-+.|++|+++++.. ..... ....+...+..-+.|+.|+++.+.
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~-----g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQ-----VEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHH-----HHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHH-----HHHHHHHHHHhCCCcCeEeccCCC
Confidence 1233445688888875422 10000 011233455556677777775443
No 277
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.43 E-value=0.15 Score=54.45 Aligned_cols=42 Identities=21% Similarity=0.181 Sum_probs=31.5
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCC
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQ 168 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 168 (790)
...++|.++|.+|+||||++..++.....+... .+.-+++..
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~-kVllvd~D~ 139 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKK-KVLVVSADV 139 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCC-CEEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEEecCC
Confidence 457899999999999999999999887654123 355555553
No 278
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.37 E-value=0.04 Score=50.21 Aligned_cols=29 Identities=31% Similarity=0.479 Sum_probs=24.9
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhc
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIED 155 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~ 155 (790)
..++++|+|..|+||||++..+....+.+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 46899999999999999999999887643
No 279
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.37 E-value=0.024 Score=52.65 Aligned_cols=22 Identities=41% Similarity=0.572 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHhHHHHHHHH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFAR 150 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~ 150 (790)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 280
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.36 E-value=0.21 Score=51.00 Aligned_cols=51 Identities=16% Similarity=0.220 Sum_probs=38.9
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEK 182 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 182 (790)
-.++.|.|.+|+||||+|.+++.....+. ..++|++.. .+..++...+...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 46899999999999999999987765432 578888766 4566666666554
No 281
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.35 E-value=0.023 Score=52.89 Aligned_cols=24 Identities=13% Similarity=0.407 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
++++|+|+.|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998765
No 282
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.34 E-value=0.033 Score=65.70 Aligned_cols=39 Identities=26% Similarity=0.430 Sum_probs=28.1
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQ 168 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 168 (790)
...+.|+|+.|+|||++|+.+++...... ...+.++++.
T Consensus 588 ~~~vLl~Gp~GtGKT~lA~~la~~~~~~~--~~~i~i~~~~ 626 (854)
T 1qvr_A 588 IGSFLFLGPTGVGKTELAKTLAATLFDTE--EAMIRIDMTE 626 (854)
T ss_dssp SEEEEEBSCSSSSHHHHHHHHHHHHHSSG--GGEEEECTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCCC--CcEEEEechh
Confidence 46899999999999999999998763211 1234555544
No 283
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.33 E-value=0.02 Score=52.74 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.+|+|+|+.|+||||+++.++...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998875
No 284
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.32 E-value=0.026 Score=53.03 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIE 154 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~ 154 (790)
++|.|.|+.|+||||+|+.+.+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57999999999999999999998753
No 285
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.32 E-value=0.13 Score=50.39 Aligned_cols=46 Identities=20% Similarity=0.327 Sum_probs=32.3
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQE 178 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 178 (790)
.++.|.|.+|+||||+|.+++...... -..++|++.... ..++.+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~~--~~~~~~~ 69 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEEH--PVQVRQN 69 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSSC--HHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccCC--HHHHHHH
Confidence 589999999999999999887665432 235778776543 3444333
No 286
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.28 E-value=0.023 Score=53.32 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARR 151 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~ 151 (790)
-.+++|+|+.|+||||+++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 368999999999999999999764
No 287
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.27 E-value=0.027 Score=51.65 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=23.0
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
....+|+|.|+.|+||||+|+.++....
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578999999999999999999998753
No 288
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.23 E-value=0.022 Score=54.17 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
..+|+|.|+.|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998875
No 289
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.23 E-value=0.029 Score=53.23 Aligned_cols=27 Identities=30% Similarity=0.300 Sum_probs=24.2
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
.-.+|+|+|+.|+||||+++.+.....
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999998875
No 290
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.14 E-value=0.029 Score=52.65 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
.+|.|.|+.|+||||+|+.+.....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999998764
No 291
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.11 E-value=0.03 Score=55.33 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
++|.|+|+.|+||||+|+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 579999999999999999999875
No 292
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.09 E-value=0.28 Score=52.16 Aligned_cols=88 Identities=23% Similarity=0.370 Sum_probs=57.3
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC------C-------chhH-HH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSP-DIKQIQQEIAEKLGLE------L-------SEEA-EF 193 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~------~-------~~~~-~~ 193 (790)
.-++|.|.+|+|||+|+..+.+.... .+-+.++++-+.+.. ...++.+++...-... . .+++ ..
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~~~ 232 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVAK-AHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGA 232 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTT-TCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhhHh-hCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCCHHH
Confidence 45789999999999999999887532 234667788787654 4566777776552221 0 0111 11
Q ss_pred -----HHHHHHHHHHHc--CCcEEEEEeCCC
Q 039180 194 -----RRASRMFERLKN--EKKILLILDNTW 217 (790)
Q Consensus 194 -----~~~~~l~~~l~~--~kr~LlVlDdv~ 217 (790)
.....+.+.+.+ ++.+||++||+.
T Consensus 233 r~~~~~~a~tiAEyfrd~~G~dVLll~Dsit 263 (482)
T 2ck3_D 233 RARVALTGLTVAEYFRDQEGQDVLLFIDNIF 263 (482)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCEEEEEECTH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 122345555553 899999999974
No 293
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.07 E-value=0.034 Score=52.20 Aligned_cols=25 Identities=36% Similarity=0.349 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
..+|.|.|+.|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998875
No 294
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.07 E-value=0.18 Score=50.95 Aligned_cols=40 Identities=28% Similarity=0.336 Sum_probs=30.3
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeC
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVT 167 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~ 167 (790)
....+|+|+|.+|+||||++..++....... ..+.++...
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g--~kV~lv~~D 141 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEG--KSVVLAAAD 141 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEEC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcC--CEEEEEccc
Confidence 3568999999999999999999998876432 235555544
No 295
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.98 E-value=0.027 Score=52.29 Aligned_cols=25 Identities=48% Similarity=0.590 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.++|.|+|+.|+||||+|+.++...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999999875
No 296
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.94 E-value=0.028 Score=51.94 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
+.|.|.|+.|+||||+|+.++...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999875
No 297
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.94 E-value=0.036 Score=51.13 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
-.+|+|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 298
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.86 E-value=0.18 Score=53.76 Aligned_cols=88 Identities=26% Similarity=0.388 Sum_probs=57.6
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC-------C-------chhHHH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSP-DIKQIQQEIAEKLGLE-------L-------SEEAEF 193 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~-------~~~~~~ 193 (790)
..++|.|.+|+|||+|+..+.+.... .+-+.++++-+.+.. ...++.+++...-... . .+++..
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~~ 244 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPG 244 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTTT-TCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCHH
T ss_pred CeEEeecCCCCCchHHHHHHHHHHHh-hCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCHH
Confidence 34789999999999999999987532 234677888887765 4566677766542221 0 011111
Q ss_pred ------HHHHHHHHHHHc--CCcEEEEEeCCC
Q 039180 194 ------RRASRMFERLKN--EKKILLILDNTW 217 (790)
Q Consensus 194 ------~~~~~l~~~l~~--~kr~LlVlDdv~ 217 (790)
.....+.+.+.+ ++.+|+++||+.
T Consensus 245 ~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 245 ARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp HHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 123345566654 799999999974
No 299
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.77 E-value=0.34 Score=45.53 Aligned_cols=51 Identities=18% Similarity=0.246 Sum_probs=33.9
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEK 182 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 182 (790)
.|+|=|..|+||||.++.+++.++..+ .+ +++..-.......+..+.++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g-~~-v~~treP~~t~~~~~ir~~l~~ 52 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRG-KK-VILKREPGGTETGEKIRKILLE 52 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT-CC-EEEEESSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-Cc-EEEEECCCCCcHHHHHHHHhhc
Confidence 477889999999999999999987543 33 3444333334444555555544
No 300
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.75 E-value=0.037 Score=52.49 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
+|+|.|+.|+||||+|+.++....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998764
No 301
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.69 E-value=0.11 Score=52.75 Aligned_cols=28 Identities=25% Similarity=0.248 Sum_probs=24.2
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
....+|+|.|..|+||||+++.+.....
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3567999999999999999999987764
No 302
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.69 E-value=0.038 Score=52.77 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=24.5
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhh
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIE 154 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~ 154 (790)
.-.+|+|+|+.|.|||||++.+......
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3579999999999999999999887653
No 303
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.68 E-value=0.036 Score=52.70 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.+++|+|+.|+|||||++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999998764
No 304
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.68 E-value=0.043 Score=52.09 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=23.8
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
....+|+|.|+.|+||||+|+.+++..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998764
No 305
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.68 E-value=0.036 Score=52.92 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
-.+|+|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998765
No 306
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.66 E-value=0.032 Score=53.09 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
-++|+|+|++|+||||+++.+....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999998875
No 307
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.66 E-value=0.031 Score=52.09 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
++|.|+|+.|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999875
No 308
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.64 E-value=0.042 Score=51.74 Aligned_cols=25 Identities=36% Similarity=0.388 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
..+|+|.|+.|+||||+|+.+++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998875
No 309
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.61 E-value=0.04 Score=51.58 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHhHHHHHHHH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFAR 150 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~ 150 (790)
.+++|+|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 310
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.60 E-value=0.044 Score=51.53 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
..+|+|.|+.|+||||+|+.++...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3679999999999999999998765
No 311
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.56 E-value=0.033 Score=52.11 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
++++|+|+.|+||||+++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999998764
No 312
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.54 E-value=0.036 Score=50.97 Aligned_cols=24 Identities=38% Similarity=0.422 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
++|.|.|+.|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999999875
No 313
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.54 E-value=0.042 Score=51.87 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
..+|+|.|+.|+||||+|+.+....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999875
No 314
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.52 E-value=0.043 Score=51.18 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARR 151 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~ 151 (790)
..+|+|+|+.|+||||+++.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999886
No 315
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.50 E-value=0.037 Score=51.50 Aligned_cols=24 Identities=33% Similarity=0.438 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
+.|.|+|++|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999998774
No 316
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.50 E-value=0.047 Score=50.89 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.+|++.|+.|+||||+|+.+++..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998765
No 317
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.49 E-value=0.045 Score=51.85 Aligned_cols=26 Identities=31% Similarity=0.317 Sum_probs=23.1
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHH
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARR 151 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~ 151 (790)
....+|+|+|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999999874
No 318
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.48 E-value=0.22 Score=50.25 Aligned_cols=87 Identities=18% Similarity=0.198 Sum_probs=48.6
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHH-HHHHHHHHHhCCCCc----hhHHHHHHHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIK-QIQQEIAEKLGLELS----EEAEFRRASRMFE 201 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~~----~~~~~~~~~~l~~ 201 (790)
..++++++|.+|+||||++..++....... ..+.++......... ..+....+..+.... .....+.......
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~--~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG--RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTT--CCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 467999999999999999999998775432 235555554322111 123344455554322 1111222233444
Q ss_pred HHH-cCCcEEEEEeCC
Q 039180 202 RLK-NEKKILLILDNT 216 (790)
Q Consensus 202 ~l~-~~kr~LlVlDdv 216 (790)
.+. . ..=++|+|-.
T Consensus 175 ~~~~~-~~D~viiDtp 189 (295)
T 1ls1_A 175 KARLE-ARDLILVDTA 189 (295)
T ss_dssp HHHHH-TCCEEEEECC
T ss_pred HHHhC-CCCEEEEeCC
Confidence 443 3 3346788876
No 319
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.43 E-value=1.5 Score=47.28 Aligned_cols=51 Identities=16% Similarity=0.191 Sum_probs=36.3
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIA 180 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 180 (790)
.-.++.|.|.+|+||||+|..++....... -..++|++... +...+...+.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHHH
Confidence 345899999999999999999998765431 12577877654 4455655553
No 320
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.42 E-value=0.048 Score=50.47 Aligned_cols=24 Identities=46% Similarity=0.534 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
.++|+|+.|+|||||++.++....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 321
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.42 E-value=0.05 Score=50.80 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=24.5
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhh
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIE 154 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~ 154 (790)
.-.+|.|.|+.|+||||+++.++.....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3468999999999999999999988754
No 322
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.41 E-value=0.048 Score=52.06 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIE 154 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~ 154 (790)
.+|+|.|+.|+||||+|+.+.+....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 58999999999999999999988754
No 323
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.41 E-value=0.36 Score=52.36 Aligned_cols=40 Identities=23% Similarity=0.198 Sum_probs=28.7
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeC
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVT 167 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~ 167 (790)
...++|+|+|.+|+||||++..++.....++ .. +.-|+..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G-~k-VllVd~D 138 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKG-WK-TCLICAD 138 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTT-CC-EEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCC-Ce-EEEEecc
Confidence 3578999999999999999999998776432 22 4455553
No 324
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.37 E-value=0.048 Score=51.15 Aligned_cols=26 Identities=12% Similarity=0.319 Sum_probs=23.0
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.-++|+|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 35789999999999999999998764
No 325
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.35 E-value=0.049 Score=54.07 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=23.3
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
..+|.|.|++|+||||+|+.+.....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 326
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.35 E-value=0.043 Score=52.12 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHhHHHHHHHH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFAR 150 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~ 150 (790)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 327
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.33 E-value=0.051 Score=50.94 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
..+|+|.|+.|+||||+|+.+....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998875
No 328
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.30 E-value=0.045 Score=52.04 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
-.+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998765
No 329
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.30 E-value=0.037 Score=51.48 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=18.5
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
..+|.|.|+.|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998775
No 330
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.29 E-value=0.049 Score=52.74 Aligned_cols=24 Identities=38% Similarity=0.512 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.+|+|+|+.|+||||+|+.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998764
No 331
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.27 E-value=0.049 Score=52.03 Aligned_cols=27 Identities=37% Similarity=0.372 Sum_probs=23.6
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
.-.+|+|+|+.|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999988754
No 332
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.22 E-value=0.06 Score=51.43 Aligned_cols=28 Identities=25% Similarity=0.227 Sum_probs=25.0
Q ss_pred CCceeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 125 DIWLNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 125 ~~~~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
-...++|.|.|++|+||+|.|+.+++++
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999999999876
No 333
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.22 E-value=0.054 Score=49.50 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHh
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999875
No 334
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.18 E-value=0.11 Score=52.75 Aligned_cols=42 Identities=21% Similarity=0.125 Sum_probs=29.7
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCC
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQ 168 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 168 (790)
.-.+|+|+|..|+|||||++.+..-......-..+..+.-..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~ 130 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDG 130 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGG
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCc
Confidence 457999999999999999999988765321112355555443
No 335
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.18 E-value=0.042 Score=50.51 Aligned_cols=21 Identities=33% Similarity=0.623 Sum_probs=18.7
Q ss_pred eeEEEEEcCCCCcHhHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEF 148 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~ 148 (790)
-.+++|+|+.|+|||||++.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999963
No 336
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.17 E-value=0.052 Score=49.77 Aligned_cols=37 Identities=30% Similarity=0.268 Sum_probs=27.1
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEE
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFS 164 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv 164 (790)
.++++|+|..|+|||||++.+..-......-...+.+
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~ 38 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKR 38 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEE
Confidence 3689999999999999999998876654222344444
No 337
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.15 E-value=0.052 Score=53.37 Aligned_cols=25 Identities=28% Similarity=0.305 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
..+|+|+|+.|+||||+++.+++..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999775
No 338
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.15 E-value=0.041 Score=52.03 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
++++|+|+.|+|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998765
No 339
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.11 E-value=0.056 Score=50.76 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
+|+|.|+.|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 340
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.10 E-value=0.063 Score=54.01 Aligned_cols=54 Identities=13% Similarity=0.024 Sum_probs=34.5
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhcc-CCCEEEEEEeCCCCCHHHHHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDE-LYDMVVFSEVTQSPDIKQIQQEIA 180 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~ 180 (790)
...+|+|+|..|+||||+|+.+........ ....+..|+...-.-.......+.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~ 84 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLN 84 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHh
Confidence 467999999999999999999888765421 122344445554333334444443
No 341
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.09 E-value=0.056 Score=51.20 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
..+|+|.|+.|+||||+|+.+....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999875
No 342
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.07 E-value=0.16 Score=47.67 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhhh
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAIE 154 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~~ 154 (790)
+|+|.|+.|+||||+++.+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999988743
No 343
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.03 E-value=0.069 Score=50.02 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=23.8
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.+-.+|+|+|+.|+||||+|+.+.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhc
Confidence 456789999999999999999998763
No 344
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.02 E-value=0.059 Score=53.18 Aligned_cols=27 Identities=22% Similarity=0.200 Sum_probs=23.8
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
...+|+|.|+.|+||||+|+.+.....
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 457899999999999999999988653
No 345
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.97 E-value=0.18 Score=63.37 Aligned_cols=84 Identities=19% Similarity=0.230 Sum_probs=55.5
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCch------hHHHHHHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSE------EAEFRRASRMF 200 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~ 200 (790)
.-+.|.|+|++|+|||+||.++....... =..++|+++...++... ++.++.+... ....+.+..+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~--G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 46689999999999999999998765432 23578888888877666 4555532110 11122233333
Q ss_pred HHHHcCCcEEEEEeCCC
Q 039180 201 ERLKNEKKILLILDNTW 217 (790)
Q Consensus 201 ~~l~~~kr~LlVlDdv~ 217 (790)
....+.+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 34445567899999985
No 346
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=92.92 E-value=1 Score=58.73 Aligned_cols=80 Identities=19% Similarity=0.203 Sum_probs=49.0
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCCc
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEKK 208 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 208 (790)
+-|.++|++|+|||++|+.+.... ..+ ..+.++.+...+...+++.+...+......... +..-...+++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~------~~~P~~~gk~ 1337 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGL------TLLPKSDIKN 1337 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTE------EEEEBSSSSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCc------cccCCCCCce
Confidence 567899999999999998776543 123 356678887777777666666554321100000 0000002578
Q ss_pred EEEEEeCCCC
Q 039180 209 ILLILDNTWK 218 (790)
Q Consensus 209 ~LlVlDdv~~ 218 (790)
.++.+||+.-
T Consensus 1338 ~VlFiDEinm 1347 (2695)
T 4akg_A 1338 LVLFCDEINL 1347 (2695)
T ss_dssp EEEEEETTTC
T ss_pred EEEEeccccc
Confidence 9999999643
No 347
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.90 E-value=0.06 Score=51.39 Aligned_cols=32 Identities=19% Similarity=0.140 Sum_probs=26.1
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCE
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDM 160 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~ 160 (790)
..+|+|.|+.|+||||+|+.+.+.... .+++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~-~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN-NNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH-cCCcE
Confidence 468999999999999999999987643 24554
No 348
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.89 E-value=0.11 Score=47.72 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=24.3
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhh
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIE 154 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~ 154 (790)
..++++|+|..|+||||++..+......
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 3678999999999999999999987653
No 349
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.88 E-value=0.038 Score=52.95 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIE 154 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~ 154 (790)
.+|+|.|+.|+||||+|+.+......
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 37899999999999999999988653
No 350
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.86 E-value=0.064 Score=51.65 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
...|.|.|+.|+||||+|+.++...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999999875
No 351
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.86 E-value=0.88 Score=46.42 Aligned_cols=58 Identities=22% Similarity=0.283 Sum_probs=38.0
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCC-CCHHHHHHHHHHHhCC
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQS-PDIKQIQQEIAEKLGL 185 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~ 185 (790)
..-.+++|+|+.|+||||+++.++...+... . .+.++..... ....+-++...+.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~-g-~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHG-F-SVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTT-C-CEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcC-C-EEEEEeecccccchHHHHHHHHHHcCc
Confidence 3468999999999999999999998775432 2 2444444322 2334445555666653
No 352
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.86 E-value=0.058 Score=51.31 Aligned_cols=22 Identities=41% Similarity=0.585 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHhHHHHHHHH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFAR 150 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~ 150 (790)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 353
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.83 E-value=0.059 Score=53.14 Aligned_cols=25 Identities=40% Similarity=0.490 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
-.+|+|+|+.|+||||+++.++..+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999764
No 354
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.78 E-value=0.065 Score=48.42 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
-.+++++|+.|.|||||++.++.-.
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3689999999999999999999876
No 355
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.78 E-value=0.064 Score=51.33 Aligned_cols=32 Identities=16% Similarity=0.119 Sum_probs=26.0
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCE
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDM 160 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~ 160 (790)
..+|+|.|+.|+||||+|+.+.+..... +++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~-~~~v 40 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA-GHRA 40 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 4689999999999999999999886532 3554
No 356
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.76 E-value=0.064 Score=51.06 Aligned_cols=26 Identities=38% Similarity=0.512 Sum_probs=22.6
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHH
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARR 151 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~ 151 (790)
....+|+|+|..|+||||+|+.+...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999998764
No 357
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.75 E-value=0.057 Score=51.41 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
=.+++|+|+.|+|||||++.+..-.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998765
No 358
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.74 E-value=0.074 Score=50.34 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=24.2
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhh
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIE 154 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~ 154 (790)
...+|+|.|..|+||||+++.+......
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3579999999999999999999887643
No 359
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=92.74 E-value=0.034 Score=53.40 Aligned_cols=108 Identities=12% Similarity=0.048 Sum_probs=56.8
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHc--
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKN-- 205 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~-- 205 (790)
-.++.|+|..|+||||++..++.+....+ .. ++.+...... . ....+++.++....... ......+++.+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g-~k-Vli~~~~~d~--r-~~~~i~srlG~~~~~~~-~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYAD-VK-YLVFKPKIDT--R-SIRNIQSRTGTSLPSVE-VESAPEILNYIMSNS 85 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTT-CC-EEEEEECCCG--G-GCSSCCCCCCCSSCCEE-ESSTHHHHHHHHSTT
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcC-CE-EEEEEeccCc--h-HHHHHHHhcCCCccccc-cCCHHHHHHHHHHHh
Confidence 46889999999999999999998876542 23 3333322211 1 12234455554322110 0011223333332
Q ss_pred --CCcEEEEEeCCCCc--cCccccCccCCCCCCCcEEEEEeCC
Q 039180 206 --EKKILLILDNTWKS--LDLGTIGIPFGVEHRGCKLLFTTRD 244 (790)
Q Consensus 206 --~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtR~ 244 (790)
++.-+||+|.+... +..+.+. .+.+ .|-.||+|-+.
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~-~L~~--~gi~Vil~Gl~ 125 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVAN-ILAE--NGFVVIISGLD 125 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHH-HHHH--TTCEEEEECCS
T ss_pred hCCCCCEEEEecCccCcHHHHHHHH-HHHh--CCCeEEEEecc
Confidence 33449999998643 1222221 1111 26678888884
No 360
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.69 E-value=0.069 Score=53.78 Aligned_cols=26 Identities=23% Similarity=0.172 Sum_probs=23.1
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998764
No 361
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.64 E-value=0.07 Score=51.16 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHh
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.|+|.|+.|+||||+|+.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998775
No 362
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.61 E-value=0.064 Score=51.96 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
...|.|.|+.|+||||+|+.++...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999998865
No 363
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.55 E-value=0.065 Score=52.59 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
-.+|+|.|+.|+||||+++.+....
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998764
No 364
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.53 E-value=0.086 Score=53.42 Aligned_cols=29 Identities=28% Similarity=0.351 Sum_probs=25.1
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhc
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIED 155 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~ 155 (790)
.-.+|+|+|++|+||||+++.++......
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 45799999999999999999999877543
No 365
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.50 E-value=0.069 Score=51.28 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=23.0
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
-.+++|+|+.|+|||||++.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 36899999999999999999988754
No 366
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.49 E-value=0.057 Score=51.91 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.+++|+|+.|+|||||++.+....
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999998765
No 367
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.45 E-value=0.065 Score=51.65 Aligned_cols=26 Identities=15% Similarity=0.046 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
...|.|.|+.|+||||+|+.++....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998763
No 368
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.36 E-value=0.087 Score=48.74 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=23.5
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIE 154 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~ 154 (790)
-.+|+|.|+.|+||||+++.+......
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 457899999999999999999987643
No 369
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.30 E-value=0.076 Score=50.91 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHh
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.|+|.|+.|+||||+|+.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 370
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.30 E-value=0.087 Score=50.29 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=23.5
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
-.+|.|.|+.|+||||+|+.+.....
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999998765
No 371
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.23 E-value=0.37 Score=51.05 Aligned_cols=57 Identities=19% Similarity=0.162 Sum_probs=37.0
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHH--HHHHHHHHhCCC
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQ--IQQEIAEKLGLE 186 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~--~~~~i~~~l~~~ 186 (790)
...+++++|.+|+||||++..++....... ..+..+... ...... .++...+..+.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g--~~Vllvd~D-~~r~aa~~qL~~~~~~~gv~ 155 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG--RRPLLVAAD-TQRPAAREQLRLLGEKVGVP 155 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEEECC-SSCHHHHHHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEeecc-ccCchhHHHHHHhcccCCcc
Confidence 467999999999999999999998876442 235555543 333332 234445555543
No 372
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.21 E-value=0.075 Score=49.64 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
+++|+|+.|+||||+++.++....
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999988764
No 373
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.17 E-value=0.086 Score=53.88 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
++|+|.|+.|+||||+|..++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999999875
No 374
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.17 E-value=0.097 Score=51.25 Aligned_cols=25 Identities=20% Similarity=0.118 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
..+|+|.|+.|+||||+|+.+.+..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999998775
No 375
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.16 E-value=0.085 Score=50.63 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
...|.|.|+.|+||||+|+.++...
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999999876
No 376
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.15 E-value=0.14 Score=49.24 Aligned_cols=27 Identities=26% Similarity=0.258 Sum_probs=23.8
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
..++|+|+|.+|+|||||+.++.....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 367899999999999999999988753
No 377
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.06 E-value=0.083 Score=50.02 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
-.+|+|.|+.|+||||+++.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998865
No 378
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.00 E-value=0.42 Score=48.95 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=37.6
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEK 182 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 182 (790)
-.++.|.|.+|+||||+|..++...... =..++|++.. -+..++...++..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSlE--ms~~ql~~Rlls~ 96 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSLE--MSAEQLALRALSD 96 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCC--CCHHHHHHHHHHH
Confidence 3689999999999999999999876542 3457777664 4556666666543
No 379
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.96 E-value=0.11 Score=52.71 Aligned_cols=28 Identities=32% Similarity=0.383 Sum_probs=24.7
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhh
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIE 154 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~ 154 (790)
.-.+++|+|+.|+||||+++.++...+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999987654
No 380
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.93 E-value=0.097 Score=50.52 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
..+|+|.|++|+||||+|+.+....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998775
No 381
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.93 E-value=0.14 Score=49.24 Aligned_cols=27 Identities=22% Similarity=0.253 Sum_probs=23.6
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
...+|+|+|.+|+|||||+.++.....
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 367899999999999999999998754
No 382
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.89 E-value=0.081 Score=51.86 Aligned_cols=24 Identities=42% Similarity=0.432 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.+|+|+|+.|+||||+++.++...
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999875
No 383
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.84 E-value=0.1 Score=49.61 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHh
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
+|+|.|+.|+||||+|+.+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998865
No 384
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.84 E-value=0.089 Score=51.27 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=22.6
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.. .+++|+|+.|.|||||++.++.-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 35 899999999999999999987543
No 385
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.80 E-value=0.1 Score=50.01 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFAR 150 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~ 150 (790)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999975
No 386
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.79 E-value=0.086 Score=52.02 Aligned_cols=26 Identities=27% Similarity=0.175 Sum_probs=23.4
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
...+|.++|++|+||||+|+.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998875
No 387
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=91.77 E-value=0.48 Score=49.30 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=22.2
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARR 151 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~ 151 (790)
....|+++|.+|+|||||...+...
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999998754
No 388
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.73 E-value=0.096 Score=52.54 Aligned_cols=25 Identities=24% Similarity=0.561 Sum_probs=22.2
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHH
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFAR 150 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~ 150 (790)
....+|+|.|+.|+||||+|+.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999983
No 389
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.61 E-value=0.29 Score=49.43 Aligned_cols=51 Identities=18% Similarity=0.203 Sum_probs=34.3
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAE 181 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 181 (790)
=.+++|.|.+|+|||||++.++........ ..++|+.... ...++.+.+..
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G-~~v~~~~~e~--~~~~~~~r~~~ 85 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMG-KKVGLAMLEE--SVEETAEDLIG 85 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSC-CCEEEEESSS--CHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcC-CeEEEEeCcC--CHHHHHHHHHH
Confidence 358999999999999999999987654311 1466666543 34444444433
No 390
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.59 E-value=0.11 Score=50.11 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHh
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998875
No 391
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.58 E-value=0.069 Score=53.80 Aligned_cols=42 Identities=24% Similarity=0.166 Sum_probs=26.6
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCC
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSP 170 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 170 (790)
...+|+|.|..|+||||+|+.+.+..... .+. +..++...-.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~-~~~-~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRRE-GVK-AVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHH-TCC-EEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhc-CCC-eeEeecchhh
Confidence 45689999999999999999998865321 122 3445555444
No 392
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.57 E-value=0.11 Score=52.82 Aligned_cols=24 Identities=29% Similarity=0.263 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
++|.|+|+.|+||||+|..++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999874
No 393
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.54 E-value=0.18 Score=51.43 Aligned_cols=40 Identities=30% Similarity=0.310 Sum_probs=30.3
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeC
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVT 167 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~ 167 (790)
...++|+|+|.+|+||||++..++......+ ..+.++...
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g--~kVllid~D 142 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELG--YKVLIAAAD 142 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTT--CCEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCC
Confidence 3568999999999999999999998776432 235555544
No 394
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.52 E-value=0.19 Score=48.62 Aligned_cols=32 Identities=34% Similarity=0.486 Sum_probs=26.6
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCE
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDM 160 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~ 160 (790)
.-.+|+|.|+.|+||||+++.+.+.... .++.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~--~~~~ 56 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK--DYDV 56 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT--TSCE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc--CCCc
Confidence 3468999999999999999999998764 4553
No 395
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.49 E-value=0.11 Score=49.62 Aligned_cols=23 Identities=22% Similarity=0.112 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHh
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 396
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=91.47 E-value=0.19 Score=52.34 Aligned_cols=57 Identities=18% Similarity=0.142 Sum_probs=35.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhcccCCcccccceecCCceeEEEEEcCCCCcHhHHHHHHHHH
Q 039180 89 RYQHGRKAETEKEALSKLREEAERFDNRISYPTIREDIWLNIIGVYGMGGIGKTTLVKEFARR 151 (790)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~vv~I~G~~G~GKTtLa~~~~~~ 151 (790)
+..+..++..++.+++++.+.+....... ...+.++|+|+|.+|+|||||...+...
T Consensus 146 ~~~~~~~i~~l~~~l~~~~~~r~~~r~~r------~~~~~~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 146 IKFYKRRINKLMKELESIKIFKEKSIESN------KRNNIPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-------------------CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhcCCcEEEEECCCCCCHHHHHHHHHCC
Confidence 44566777777777777743221111000 1135778999999999999999988754
No 397
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.47 E-value=0.068 Score=51.91 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=16.0
Q ss_pred eEEEEEcCCCCcHhHHHHHHH-HHh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFA-RRA 152 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~-~~~ 152 (790)
.+++|+|+.|+||||+++.+. ...
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 689999999999999999998 653
No 398
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=91.40 E-value=0.25 Score=52.52 Aligned_cols=87 Identities=21% Similarity=0.270 Sum_probs=53.5
Q ss_pred EEEEcCCCCcHhHHHHHHHHHhhhccC--CCEEEEEEeCCCC-CHHHHHHHHHHHhCCC-------Cchh-HH-----HH
Q 039180 131 IGVYGMGGIGKTTLVKEFARRAIEDEL--YDMVVFSEVTQSP-DIKQIQQEIAEKLGLE-------LSEE-AE-----FR 194 (790)
Q Consensus 131 v~I~G~~G~GKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~-~~-----~~ 194 (790)
++|.|.+|+|||+|+.+++........ =+.++++-+++.. ...++.+++...-... ..++ .. ..
T Consensus 155 ~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~~~ 234 (469)
T 2c61_A 155 LPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPR 234 (469)
T ss_dssp CCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHHHH
Confidence 567799999999999999988653211 1456777776644 4556666665542111 0011 11 11
Q ss_pred HHHHHHHHHH--cCCcEEEEEeCCC
Q 039180 195 RASRMFERLK--NEKKILLILDNTW 217 (790)
Q Consensus 195 ~~~~l~~~l~--~~kr~LlVlDdv~ 217 (790)
....+.+.+. +++.+|+++||+.
T Consensus 235 ~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 235 MALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred HHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 2234555665 4899999999963
No 399
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.38 E-value=0.17 Score=50.09 Aligned_cols=28 Identities=39% Similarity=0.436 Sum_probs=24.7
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
....++.+.|.||+||||++..++....
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3567899999999999999999998776
No 400
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.38 E-value=0.09 Score=49.98 Aligned_cols=23 Identities=35% Similarity=0.296 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARR 151 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~ 151 (790)
.+++|+|+.|.|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999998876
No 401
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.35 E-value=0.13 Score=50.04 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
...|.|.|+.|+||||+|+.+++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999876
No 402
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=91.35 E-value=0.27 Score=51.98 Aligned_cols=87 Identities=20% Similarity=0.274 Sum_probs=53.0
Q ss_pred EEEEcCCCCcHhHHHHHHHHHhhhc-cCCC-EEEEEEeCCC-CCHHHHHHHHHHHhCCC-------CchhH-HH-----H
Q 039180 131 IGVYGMGGIGKTTLVKEFARRAIED-ELYD-MVVFSEVTQS-PDIKQIQQEIAEKLGLE-------LSEEA-EF-----R 194 (790)
Q Consensus 131 v~I~G~~G~GKTtLa~~~~~~~~~~-~~f~-~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~-~~-----~ 194 (790)
++|.|..|+|||+|+.++++..... ++-+ .++++-+.+. ..+.++.+++...-... ..+++ .. .
T Consensus 154 ~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~~ 233 (465)
T 3vr4_D 154 LPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATPR 233 (465)
T ss_dssp CCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHHH
T ss_pred EEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHHH
Confidence 5788999999999999998875431 1111 5677777754 34556666654431111 01111 11 1
Q ss_pred HHHHHHHHHH--cCCcEEEEEeCCC
Q 039180 195 RASRMFERLK--NEKKILLILDNTW 217 (790)
Q Consensus 195 ~~~~l~~~l~--~~kr~LlVlDdv~ 217 (790)
....+.+.+. .++.+|+++||+.
T Consensus 234 ~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 234 MALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHhcCCeEEEEEcChH
Confidence 2235666666 3899999999974
No 403
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.34 E-value=0.087 Score=50.79 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.+++|+|+.|+|||||++.++.-.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 579999999999999999887543
No 404
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.32 E-value=0.1 Score=52.33 Aligned_cols=25 Identities=24% Similarity=0.402 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.++|+|.|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 405
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.32 E-value=0.089 Score=51.14 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
=.+++|+|+.|+|||||++.+..-.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3579999999999999999887543
No 406
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.24 E-value=0.11 Score=48.66 Aligned_cols=26 Identities=19% Similarity=0.156 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
.+.+.|+|++|+||||+|..+++...
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34689999999999999999998864
No 407
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.21 E-value=0.22 Score=50.64 Aligned_cols=42 Identities=24% Similarity=0.277 Sum_probs=31.4
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCC
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQS 169 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 169 (790)
...++|+|+|-||+||||+|..++......+ ..+.-|++...
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G--~~VlliD~D~~ 80 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILG--KRVLQIGCDPK 80 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEESSS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCC--CeEEEEeCCCC
Confidence 3578899999999999999999998876542 23666666543
No 408
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.17 E-value=0.13 Score=48.67 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHh
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
+|.|.|++|+||+|.|+.++.++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999875
No 409
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=91.15 E-value=0.19 Score=58.56 Aligned_cols=129 Identities=13% Similarity=0.174 Sum_probs=69.8
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
..-|.|+|++|+||||||+.++..... ..+.++.+. +...... .....+..+++......
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~~l~~-----~~i~v~~~~--------------l~~~~~g-~~~~~l~~vf~~a~~~~ 297 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVANETGA-----FFFLINGPE--------------IMSKLAG-ESESNLRKAFEEAEKNA 297 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHHTTTC-----EEEEEEHHH--------------HSSSSTT-HHHHHHHHHHHHHHHHC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCC-----cEEEEEchH--------------hhhhhhh-hHHHHHHHHHHHHHhcC
Confidence 456899999999999999999876421 124443211 1111111 11233444555544446
Q ss_pred cEEEEEeCCCCccC-------------ccccCccCCC--CCCCcEEEEEeCChhHHhh-hC----CCceEEccCCCHHHH
Q 039180 208 KILLILDNTWKSLD-------------LGTIGIPFGV--EHRGCKLLFTTRDLDVLIR-MG----SEKNFSIGILNEQEA 267 (790)
Q Consensus 208 r~LlVlDdv~~~~~-------------~~~l~~~~~~--~~~gs~iliTtR~~~v~~~-~~----~~~~~~l~~L~~~~~ 267 (790)
..++++|++..... ...+...+.. ...+..+|.||...+.... +. -...+.+...+.++-
T Consensus 298 p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r 377 (806)
T 1ypw_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377 (806)
T ss_dssp SEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHH
T ss_pred CcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHH
Confidence 78999999854311 0011111111 1223455556655322221 11 124577888889998
Q ss_pred HHHHHHHhC
Q 039180 268 WRLFKIIAG 276 (790)
Q Consensus 268 ~~Lf~~~~~ 276 (790)
.+++...+.
T Consensus 378 ~~il~~~~~ 386 (806)
T 1ypw_A 378 LEILQIHTK 386 (806)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHHHh
Confidence 888887664
No 410
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=91.12 E-value=0.17 Score=54.48 Aligned_cols=85 Identities=14% Similarity=0.170 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccCCCCChHHHHHHhHHHHHHHHHHHHHHHhhc---ccCCcccccc
Q 039180 45 IEEMVEKWLVNANKRIEQAAKFIQDEEAANDGRCLMGLFPDWFARYQHGRKAETEKEALSKLREEAE---RFDNRISYPT 121 (790)
Q Consensus 45 ~~~~~~~w~~~~~~~~~~~ed~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~p~ 121 (790)
....+..|..++.++...+|-.+|--+ .. .. ..+..+..++..+..+++++.+... ...
T Consensus 161 ~~~~~~~~r~~l~~~~a~iEa~iDf~e-d~--~~--------~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~r------- 222 (462)
T 3geh_A 161 LAHPIRQLRANCLDILAEIEARIDFEE-DL--PP--------LDDEAIISDIENIAAEISQLLATKDKGELLR------- 222 (462)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTSSS-SS--CC--------CCTTTHHHHHHHHHHHHHHHTTTHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccc-cC--Ch--------hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhc-------
Confidence 467799999999999888888887422 10 00 0122345566666666666532211 111
Q ss_pred eecCCceeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 122 IREDIWLNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 122 ~~~~~~~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.+++ |+|+|.+|+|||||...+....
T Consensus 223 ----~~~k-V~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 223 ----TGLK-VAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp ----HCEE-EEEEECTTSSHHHHHHHHHHHH
T ss_pred ----CCCE-EEEEcCCCCCHHHHHHHHhCCC
Confidence 1233 8999999999999999988763
No 411
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.08 E-value=0.15 Score=52.86 Aligned_cols=28 Identities=32% Similarity=0.383 Sum_probs=24.8
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhh
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIE 154 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~ 154 (790)
.-.+++|+|+.|+||||+++.++.....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 4579999999999999999999987754
No 412
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.05 E-value=1 Score=48.33 Aligned_cols=52 Identities=15% Similarity=-0.007 Sum_probs=37.2
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAE 181 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 181 (790)
.-.++.|.|.+|+||||+|..++....... -..++|++.. .+..++...++.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE--~~~~~l~~R~~~ 250 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLE--MPAAQLTLRMMC 250 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESS--SCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECC--CCHHHHHHHHHH
Confidence 345899999999999999999998765321 2347787765 345566666554
No 413
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.96 E-value=0.14 Score=51.43 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=23.0
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
..++|.|.|+.|+||||||..++...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35789999999999999999999774
No 414
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=90.93 E-value=0.076 Score=54.67 Aligned_cols=40 Identities=20% Similarity=0.099 Sum_probs=28.4
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhc-cCCCEEEEEEeCCC
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIED-ELYDMVVFSEVTQS 169 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~ 169 (790)
..++|+|.+|+|||+|+..+.+..... ..+. ++++-+++.
T Consensus 176 QR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 176 QRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred ceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 457999999999999999998875432 1233 345666654
No 415
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.93 E-value=0.13 Score=52.26 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=23.7
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
.-.+|+|+|..|+|||||++.+.....
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 357999999999999999999988654
No 416
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.88 E-value=0.1 Score=50.73 Aligned_cols=25 Identities=24% Similarity=0.406 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
=.+++|+|+.|+|||||++.++.-.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999987654
No 417
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.87 E-value=0.099 Score=53.21 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.++|.|+|+.|+||||||..++...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 3689999999999999999998754
No 418
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.82 E-value=0.73 Score=44.18 Aligned_cols=28 Identities=36% Similarity=0.438 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhc
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIED 155 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~ 155 (790)
-..|+|-|+.|+||||+++.+++.....
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 3579999999999999999999987643
No 419
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.73 E-value=0.13 Score=50.58 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARR 151 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~ 151 (790)
.+++|+|+.|.|||||++.++.-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999998863
No 420
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.66 E-value=0.11 Score=51.43 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
=.+++|+|+.|+|||||++.++.-.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999887543
No 421
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=90.66 E-value=0.28 Score=49.34 Aligned_cols=40 Identities=25% Similarity=0.402 Sum_probs=30.2
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQS 169 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 169 (790)
.++|+|.|.||+||||+|..++......+ . .+.-|+....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G-~-rVlliD~D~q 41 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMG-K-KVMIVGCDPK 41 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTT-C-CEEEEEECSS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCC-C-eEEEEecCCC
Confidence 47888899999999999999998876442 2 3566666543
No 422
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.54 E-value=0.11 Score=51.60 Aligned_cols=23 Identities=30% Similarity=0.635 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARR 151 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~ 151 (790)
.+++|+|+.|.|||||++.+..-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999988754
No 423
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.52 E-value=0.12 Score=50.50 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.+++|+|+.|.|||||.+.++.-.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999987543
No 424
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.52 E-value=0.099 Score=49.90 Aligned_cols=24 Identities=42% Similarity=0.641 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.+++|+|+.|.|||||++.++.-.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999987543
No 425
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.52 E-value=0.4 Score=46.38 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=28.5
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEE
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSE 165 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~ 165 (790)
-.+|+|.|+.|+||||+++.+.+..... ++..+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN-GIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT-TCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCeeeeec
Confidence 3689999999999999999999988653 455334333
No 426
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.50 E-value=0.18 Score=47.21 Aligned_cols=26 Identities=31% Similarity=0.618 Sum_probs=22.6
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
..-.|+|+|..|+|||||++.+....
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC
Confidence 45678999999999999999998754
No 427
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.49 E-value=0.15 Score=51.63 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARR 151 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~ 151 (790)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999874
No 428
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.49 E-value=0.21 Score=47.49 Aligned_cols=40 Identities=18% Similarity=0.136 Sum_probs=28.8
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCC
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPD 171 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 171 (790)
.|.+.|.||+||||+|..++.....++ ++ +..+.+....+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G-~~-V~v~d~D~q~~ 47 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQG-VR-VMAGVVETHGR 47 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTT-CC-EEEEECCCTTC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCC-CC-EEEEEeCCCCC
Confidence 478899999999999999998876542 34 44555554333
No 429
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.47 E-value=0.12 Score=51.17 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=21.9
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.=.+++|+|+.|.|||||++.++.-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 33589999999999999999987543
No 430
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.47 E-value=0.14 Score=50.89 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARR 151 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~ 151 (790)
.+++|+|+.|.|||||++.++.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999998864
No 431
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.47 E-value=0.43 Score=45.36 Aligned_cols=52 Identities=17% Similarity=0.164 Sum_probs=34.6
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAE 181 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 181 (790)
..|++-|..|+||||+++.+.+..... .+..+.+..-.......+..++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL-GIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCCcceeeeCCCCCHHHHHHHHHHh
Confidence 578999999999999999999988654 3423343333333334455555554
No 432
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.46 E-value=0.12 Score=51.30 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
=.+++|+|+.|.|||||++.+..-.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3579999999999999999987643
No 433
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.45 E-value=0.12 Score=50.01 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.+++|+|+.|.|||||.+.++.-.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999988654
No 434
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.42 E-value=0.12 Score=51.02 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.+++|+|+.|+|||||.+.++.-.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999887543
No 435
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.38 E-value=0.18 Score=54.13 Aligned_cols=42 Identities=24% Similarity=0.282 Sum_probs=30.1
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCC
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPD 171 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 171 (790)
.-.+++|+|.+|+||||+++.++...+.. ...+++...+.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccc
Confidence 45799999999999999999999876543 2234444344444
No 436
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.37 E-value=0.13 Score=50.32 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARR 151 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~ 151 (790)
=.+++|+|+.|.|||||++.++.-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999988754
No 437
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.28 E-value=0.13 Score=50.49 Aligned_cols=24 Identities=42% Similarity=0.625 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.+++|+|+.|.|||||++.++.-.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 579999999999999999987543
No 438
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.26 E-value=0.24 Score=49.21 Aligned_cols=39 Identities=21% Similarity=0.405 Sum_probs=29.5
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCC
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQS 169 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 169 (790)
++|+|.|-||+||||+|..++......+ ..+.-|+....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G--~~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMG--KTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTT--CCEEEEEECTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCC--CcEEEEcCCCC
Confidence 6788899999999999999998876442 23566666543
No 439
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=90.23 E-value=0.99 Score=42.89 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=23.9
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIE 154 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~ 154 (790)
-..|++-|+.|+||||+++.+.+....
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 357999999999999999999998754
No 440
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.23 E-value=0.17 Score=50.06 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
-.+++|+|+.|+||||+++.+.....
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCC
Confidence 46899999999999999999887654
No 441
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.22 E-value=0.58 Score=58.05 Aligned_cols=86 Identities=19% Similarity=0.218 Sum_probs=55.7
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCch------hHHHHHHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSE------EAEFRRASRMF 200 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~ 200 (790)
.-.++.|.|.+|+||||||.+++...... -..++|++.....+.. .++.++.+... .+..+....+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~~--G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 44689999999999999999998776433 2468899988887764 25666654321 11112222222
Q ss_pred HHHHcCCcEEEEEeCCCCc
Q 039180 201 ERLKNEKKILLILDNTWKS 219 (790)
Q Consensus 201 ~~l~~~kr~LlVlDdv~~~ 219 (790)
....+.+.-+||+|-+...
T Consensus 455 ~lv~~~~~~lVVIDSL~al 473 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAAL 473 (1706)
T ss_dssp HHHHHTCCSEEEESCSTTC
T ss_pred HHHHhcCCCEEEECCHHHh
Confidence 2233345569999998654
No 442
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.16 E-value=0.13 Score=50.64 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.+++|+|+.|.|||||++.++.-.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999887543
No 443
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.13 E-value=0.18 Score=45.18 Aligned_cols=23 Identities=17% Similarity=0.465 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARR 151 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~ 151 (790)
+-|+++|.+|+|||||+.++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999998864
No 444
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=90.05 E-value=0.21 Score=51.11 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=23.4
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
....|.|+|+.|+||||+++.++....
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 456799999999999999999988754
No 445
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.00 E-value=0.14 Score=50.24 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.+++|+|+.|.|||||++.++.-.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 479999999999999999987654
No 446
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.99 E-value=0.14 Score=50.67 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARR 151 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~ 151 (790)
.+++|+|+.|.|||||++.++.-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999998754
No 447
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.92 E-value=0.14 Score=50.96 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
=.+++|+|+.|.|||||++.++.-.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999887543
No 448
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=89.92 E-value=0.19 Score=52.41 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
++|+|.|+.|+||||||..++...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 689999999999999999999875
No 449
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.90 E-value=0.54 Score=44.71 Aligned_cols=31 Identities=26% Similarity=0.252 Sum_probs=25.9
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCE
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDM 160 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~ 160 (790)
..|+|.|+.|+||||+++.+.+..... .+..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~v 37 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRER-GIEV 37 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTT-TCCE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCc
Confidence 578999999999999999999988643 3554
No 450
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=89.89 E-value=0.38 Score=45.98 Aligned_cols=28 Identities=32% Similarity=0.247 Sum_probs=24.8
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhh
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIE 154 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~ 154 (790)
.-.+|.|.|..|+||||+++.+.+....
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3568999999999999999999998765
No 451
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=89.87 E-value=0.54 Score=49.63 Aligned_cols=88 Identities=19% Similarity=0.228 Sum_probs=52.5
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhhhc--------cCCC-EEEEEEeCCCC-CHHHHHHHHHHHhCCC----------Cch
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAIED--------ELYD-MVVFSEVTQSP-DIKQIQQEIAEKLGLE----------LSE 189 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~~~--------~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~----------~~~ 189 (790)
.++|.|.+|+|||+|+.++++..... ++-+ .++++-+.+.. .+.++.+++...-... .+.
T Consensus 149 r~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p~ 228 (464)
T 3gqb_B 149 KLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPT 228 (464)
T ss_dssp BCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSCT
T ss_pred EEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCCH
Confidence 35678899999999999998875431 1222 56677777543 4555555544321010 111
Q ss_pred h---HHHHHHHHHHHHHH--cCCcEEEEEeCCC
Q 039180 190 E---AEFRRASRMFERLK--NEKKILLILDNTW 217 (790)
Q Consensus 190 ~---~~~~~~~~l~~~l~--~~kr~LlVlDdv~ 217 (790)
. ........+.+.+. +++.+|+++||+.
T Consensus 229 ~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 229 IERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 0 01112345566666 3899999999974
No 452
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.84 E-value=0.14 Score=47.61 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
+.|.|.|+.|+||||||.++..+.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 568899999999999999998764
No 453
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.83 E-value=0.21 Score=45.30 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARR 151 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~ 151 (790)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999998753
No 454
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.80 E-value=0.16 Score=51.12 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
-.+++|+|+.|.|||||++.+..-.
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc
Confidence 4689999999999999999988765
No 455
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.72 E-value=0.15 Score=50.65 Aligned_cols=23 Identities=35% Similarity=0.367 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARR 151 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~ 151 (790)
.+++|+|+.|.|||||++.++.-
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 57999999999999999988754
No 456
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.69 E-value=0.15 Score=50.15 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.+++|+|+.|.|||||.+.++.-.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999987654
No 457
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.68 E-value=0.15 Score=50.97 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.+++|+|+.|.|||||++.++.-.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 479999999999999999987654
No 458
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=89.66 E-value=0.3 Score=50.77 Aligned_cols=28 Identities=29% Similarity=0.547 Sum_probs=24.7
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhh
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIE 154 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~ 154 (790)
...+|+|+|.+|+||||++..+......
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999999999887643
No 459
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=89.52 E-value=0.86 Score=49.92 Aligned_cols=57 Identities=12% Similarity=0.070 Sum_probs=39.5
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHH-HhCCC
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAE-KLGLE 186 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~-~l~~~ 186 (790)
.-.++.|.|.+|+||||+|.+++.....+. =..++|++... +..++...++. ..+.+
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~-g~~vl~~s~E~--s~~~l~~r~~~~~~~~~ 298 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLIGLHNRVR 298 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTS-CCCEEEEESSS--CHHHHHHHHHHHHTTSC
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhc-CCcEEEEeccC--CHHHHHHHHHHHHcCCC
Confidence 346889999999999999999998765431 23477877654 45666666543 34443
No 460
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.46 E-value=0.23 Score=46.70 Aligned_cols=24 Identities=33% Similarity=0.613 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARR 151 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~ 151 (790)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999999875
No 461
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.46 E-value=0.23 Score=48.26 Aligned_cols=27 Identities=26% Similarity=0.258 Sum_probs=23.2
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
....+|+|.|+.|+||||+++.+....
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999998764
No 462
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.42 E-value=0.15 Score=54.36 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=24.2
Q ss_pred CCceeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 125 DIWLNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 125 ~~~~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.....+|.|+|++|+||||+|+.++.+.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 4567899999999999999999988654
No 463
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.40 E-value=0.22 Score=48.65 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=23.1
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
...|+|.|..|+||||+++.+++...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 36799999999999999999998863
No 464
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=89.38 E-value=0.26 Score=45.74 Aligned_cols=27 Identities=22% Similarity=0.074 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhc
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIED 155 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~ 155 (790)
.++.|+|+.|+||||++.+++.+....
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~ 30 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLG 30 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 578899999999999998887776443
No 465
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=89.36 E-value=0.41 Score=49.09 Aligned_cols=44 Identities=27% Similarity=0.246 Sum_probs=33.0
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCC
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPD 171 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 171 (790)
...+++.+.|.||+||||+|..++......+ ..+.-|+.....+
T Consensus 14 ~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g--~~vllid~D~~~~ 57 (334)
T 3iqw_A 14 RSLRWIFVGGKGGVGKTTTSCSLAIQLAKVR--RSVLLLSTDPAHN 57 (334)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHTTSS--SCEEEEECCSSCH
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhCC--CcEEEEECCCCCC
Confidence 3467889999999999999999998876442 3466677664443
No 466
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.34 E-value=0.2 Score=53.43 Aligned_cols=39 Identities=26% Similarity=0.269 Sum_probs=29.1
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeC
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVT 167 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~ 167 (790)
..++|+|+|.+|+||||++..++.....++ . .+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G-~-kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRG-L-KPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHH-C-CEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC-C-eEEEEecc
Confidence 467999999999999999999988765432 2 24555543
No 467
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=89.26 E-value=0.42 Score=49.27 Aligned_cols=45 Identities=24% Similarity=0.257 Sum_probs=33.1
Q ss_pred CCceeEEEEEcCCCCcHhHHHHHHHHHhh--hccCCCEEEEEEeCCCCC
Q 039180 125 DIWLNIIGVYGMGGIGKTTLVKEFARRAI--EDELYDMVVFSEVTQSPD 171 (790)
Q Consensus 125 ~~~~~vv~I~G~~G~GKTtLa~~~~~~~~--~~~~f~~~~wv~~~~~~~ 171 (790)
....+++.+.|.||+||||+|..++.... .. =..+.-|+.....+
T Consensus 15 ~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~--g~~vllid~D~~~~ 61 (348)
T 3io3_A 15 HDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQP--NEQFLLISTDPAHN 61 (348)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCT--TSCEEEEECCSSCH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcC--CCeEEEEECCCCCC
Confidence 34568999999999999999999998776 33 23466666664433
No 468
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.18 E-value=0.79 Score=56.94 Aligned_cols=83 Identities=19% Similarity=0.252 Sum_probs=58.6
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCch------hHHHHHHHHHHHH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSE------EAEFRRASRMFER 202 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~~~ 202 (790)
++|-|+|+.|+||||||.++....... =...+|+++....+..- ++.+|.+... ....+.+..+...
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~~~~~--g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~ 1504 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 1504 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHHH
Confidence 689999999999999999988654322 45688999988888764 7888776432 1223334444444
Q ss_pred HHcCCcEEEEEeCCCC
Q 039180 203 LKNEKKILLILDNTWK 218 (790)
Q Consensus 203 l~~~kr~LlVlDdv~~ 218 (790)
++++.--+||+|-|-.
T Consensus 1505 ~~s~~~~~vvvDsv~a 1520 (1706)
T 3cmw_A 1505 ARSGAVDVIVVDSVAA 1520 (1706)
T ss_dssp HHHTCCSEEEESCSTT
T ss_pred HHcCCCCEEEEccHHh
Confidence 5566777999999843
No 469
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.18 E-value=0.19 Score=50.34 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
-.++.|+|.+|+|||||+..++....
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 36899999999999999999987543
No 470
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=89.18 E-value=0.49 Score=44.90 Aligned_cols=42 Identities=21% Similarity=0.193 Sum_probs=31.1
Q ss_pred EEEEE-cCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHH
Q 039180 130 IIGVY-GMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQ 174 (790)
Q Consensus 130 vv~I~-G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 174 (790)
+|+|+ +-||+||||+|..++......+ .+.-++.....+...
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g---~VlliD~D~q~~~~~ 44 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG---ETLLIDGDPNRSATG 44 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS---CEEEEEECTTCHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC---CEEEEECCCCCCHHH
Confidence 56665 7899999999999998876543 577777776554433
No 471
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.17 E-value=0.16 Score=47.02 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHhHHHHHHHH
Q 039180 130 IIGVYGMGGIGKTTLVKEFAR 150 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~ 150 (790)
-|+|+|.+|+|||||+..+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999999875
No 472
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=89.16 E-value=0.41 Score=46.84 Aligned_cols=41 Identities=24% Similarity=0.361 Sum_probs=30.7
Q ss_pred EEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHH
Q 039180 131 IGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIK 173 (790)
Q Consensus 131 v~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 173 (790)
|+|.|-||+||||+|..++......+ ..+.-|+.....+..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g--~~VlliD~D~~~~l~ 43 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDY--DKIYAVDGDPDSCLG 43 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTC--SCEEEEEECTTSCHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCcChH
Confidence 66699999999999999999886543 346667766555444
No 473
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=89.14 E-value=0.2 Score=51.29 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.7
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARR 151 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~ 151 (790)
.+++++|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 5789999999999999999998864
No 474
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=89.11 E-value=0.38 Score=55.26 Aligned_cols=72 Identities=21% Similarity=0.284 Sum_probs=46.0
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHcCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSEEAEFRRASRMFERLKNEK 207 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 207 (790)
.+=|.++|++|.|||.+|++++...... ++.++. .+++.. +..++ ...+..+++..+...
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~~-------f~~v~~--------~~l~s~----~vGes-e~~vr~lF~~Ar~~~ 570 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQAN-------FISIKG--------PELLTM----WFGES-EANVREIFDKARQAA 570 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTTCE-------EEECCH--------HHHHTT----TCSSC-HHHHHHHHHHHHTTC
T ss_pred CceEEEecCCCCCchHHHHHHHHHhCCc-------eEEecc--------chhhcc----ccchH-HHHHHHHHHHHHHcC
Confidence 3447899999999999999999875321 222221 112211 11111 234666777777667
Q ss_pred cEEEEEeCCCCc
Q 039180 208 KILLILDNTWKS 219 (790)
Q Consensus 208 r~LlVlDdv~~~ 219 (790)
+++|++|+++..
T Consensus 571 P~IifiDEiDsl 582 (806)
T 3cf2_A 571 PCVLFFDELDSI 582 (806)
T ss_dssp SEEEECSCGGGC
T ss_pred CceeechhhhHH
Confidence 899999998754
No 475
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.09 E-value=0.21 Score=49.56 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 130 IIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
.++|+|+.|+|||||.+.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999997653
No 476
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=89.09 E-value=0.42 Score=45.03 Aligned_cols=43 Identities=21% Similarity=0.260 Sum_probs=31.3
Q ss_pred eEEEEE-cCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHH
Q 039180 129 NIIGVY-GMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIK 173 (790)
Q Consensus 129 ~vv~I~-G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 173 (790)
++|+|+ +-||+||||+|..++......+ ..+.-++.....+..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g--~~vlliD~D~~~~~~ 45 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSG--YNIAVVDTDPQMSLT 45 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTT--CCEEEEECCTTCHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCC--CeEEEEECCCCCCHH
Confidence 678888 6899999999999998876532 246677776554433
No 477
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.87 E-value=0.76 Score=57.89 Aligned_cols=86 Identities=21% Similarity=0.280 Sum_probs=54.9
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCch-----hHHHHHHHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPDIKQIQQEIAEKLGLELSE-----EAEFRRASRMFE 201 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~l~~ 201 (790)
.-.++.|.|.+|+||||||.+++...... -..++|++.....+... ++.++.+... ....+.+....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~--G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 34589999999999999999998876533 23588999888777542 5666654211 111122222223
Q ss_pred HH-HcCCcEEEEEeCCCCc
Q 039180 202 RL-KNEKKILLILDNTWKS 219 (790)
Q Consensus 202 ~l-~~~kr~LlVlDdv~~~ 219 (790)
.+ .+.+.-+||+|-+...
T Consensus 455 ~lv~~~~~~lIVIDSL~al 473 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAAL 473 (2050)
T ss_dssp HHHHHTCCSEEEESCGGGC
T ss_pred HHHHhcCCcEEEECCHHHh
Confidence 22 2345569999998543
No 478
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=88.79 E-value=0.49 Score=49.57 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=33.2
Q ss_pred CCceeEEEEEc-CCCCcHhHHHHHHHHHhhhccCCCEEEEEEeCCCCC
Q 039180 125 DIWLNIIGVYG-MGGIGKTTLVKEFARRAIEDELYDMVVFSEVTQSPD 171 (790)
Q Consensus 125 ~~~~~vv~I~G-~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 171 (790)
+...++|+|+| -||+||||+|..++......+ ..+.-+++....+
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g--~rVlliD~D~~~~ 185 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAIAHANMG--KKVFYLNIEQCGT 185 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHT--CCEEEEECCTTCC
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHHHHhCC--CCEEEEECCCCCC
Confidence 35678999985 999999999999988775542 2467777764333
No 479
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=88.71 E-value=0.78 Score=50.51 Aligned_cols=39 Identities=28% Similarity=0.234 Sum_probs=26.7
Q ss_pred eeEEEEEcCCCCcHhHHHHHHH-HHhhhccCCCEEEEEEeCC
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFA-RRAIEDELYDMVVFSEVTQ 168 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~-~~~~~~~~f~~~~wv~~~~ 168 (790)
=.+++|+|..|+|||||++.+. .-.... -...++++..+
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~--~~g~i~v~g~~ 78 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQFLYNGIIEF--DEPGVFVTFEE 78 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSS
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHhC--CCCEEEEEEeC
Confidence 3689999999999999999952 222211 13467776544
No 480
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=88.68 E-value=0.83 Score=48.93 Aligned_cols=88 Identities=19% Similarity=0.259 Sum_probs=51.0
Q ss_pred EEEEEcCCCCcHhHHHH-HHHHHhhh----ccCCC-EEEEEEeCCCC-CHHHHHHHHHHHhCCC--------CchhHHHH
Q 039180 130 IIGVYGMGGIGKTTLVK-EFARRAIE----DELYD-MVVFSEVTQSP-DIKQIQQEIAEKLGLE--------LSEEAEFR 194 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~-~~~~~~~~----~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~--------~~~~~~~~ 194 (790)
-++|.|..|+|||+||. .+.+.... ..+-+ .++++-+++.. .+.++.+.+...-... .+......
T Consensus 164 R~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r 243 (510)
T 2ck3_A 164 RELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQ 243 (510)
T ss_dssp BCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHHHH
T ss_pred EEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHHHH
Confidence 36899999999999954 55555431 11234 46777787654 4555666665432111 11111111
Q ss_pred -----HHHHHHHHHH-cCCcEEEEEeCCC
Q 039180 195 -----RASRMFERLK-NEKKILLILDNTW 217 (790)
Q Consensus 195 -----~~~~l~~~l~-~~kr~LlVlDdv~ 217 (790)
....+.+.+. +|+.+||++||+.
T Consensus 244 ~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 244 YLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 1224445454 4799999999974
No 481
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.62 E-value=0.24 Score=44.54 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHhHHHHHHHHH
Q 039180 130 IIGVYGMGGIGKTTLVKEFARR 151 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~~~~~~ 151 (790)
-|+++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999865
No 482
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.57 E-value=0.2 Score=49.48 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARR 151 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~ 151 (790)
.+++|+|+.|.|||||.+.++.-
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998754
No 483
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=88.55 E-value=0.27 Score=46.37 Aligned_cols=26 Identities=23% Similarity=0.135 Sum_probs=23.4
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHhh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRAI 153 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~~ 153 (790)
..+|+|.|+.|+||||+|+.++....
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999998863
No 484
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=88.48 E-value=0.25 Score=45.69 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
++.+|+|..|.||||++.+++--.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999988754
No 485
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=88.48 E-value=0.69 Score=49.44 Aligned_cols=84 Identities=19% Similarity=0.231 Sum_probs=50.1
Q ss_pred EEEEEcCCCCcHhHHHH-HHHHHhhhccCCCE-EEEEEeCCCC-CHHHHHHHHHHHhCCCC--------chhHHHH----
Q 039180 130 IIGVYGMGGIGKTTLVK-EFARRAIEDELYDM-VVFSEVTQSP-DIKQIQQEIAEKLGLEL--------SEEAEFR---- 194 (790)
Q Consensus 130 vv~I~G~~G~GKTtLa~-~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~~--------~~~~~~~---- 194 (790)
-++|.|..|+|||+||. .+.+.. .-+. ++++-+++.. .+.++.+.+...-.... +......
T Consensus 164 R~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~ 239 (502)
T 2qe7_A 164 RELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAP 239 (502)
T ss_dssp BCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHHH
T ss_pred EEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHHH
Confidence 36899999999999965 565543 2453 4677777654 45556666654322211 1111111
Q ss_pred -HHHHHHHHHH-cCCcEEEEEeCCC
Q 039180 195 -RASRMFERLK-NEKKILLILDNTW 217 (790)
Q Consensus 195 -~~~~l~~~l~-~~kr~LlVlDdv~ 217 (790)
....+.+.+. +|+.+||++||+.
T Consensus 240 ~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 240 YAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHcCCcEEEEEecHH
Confidence 1224444454 4799999999974
No 486
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.44 E-value=0.29 Score=45.29 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARR 151 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~ 151 (790)
...|+++|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999864
No 487
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=88.43 E-value=0.17 Score=51.15 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARR 151 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~ 151 (790)
.=.+++|+|+.|.|||||++.+..-
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcC
Confidence 3457999999999999999988754
No 488
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=88.24 E-value=0.21 Score=50.10 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
=.+++|+|+.|.|||||++.++.-.
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3589999999999999999987654
No 489
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.24 E-value=0.17 Score=48.96 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=21.8
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARR 151 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~ 151 (790)
.-.+|+|.|+.|+||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999988764
No 490
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.23 E-value=0.26 Score=51.42 Aligned_cols=26 Identities=23% Similarity=0.026 Sum_probs=22.8
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.-.+++|+|+.|+|||||++.++...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34689999999999999999999754
No 491
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=88.23 E-value=0.33 Score=43.76 Aligned_cols=24 Identities=21% Similarity=0.527 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHH
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARR 151 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~ 151 (790)
.--|+|+|.+|+|||||+..+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 445889999999999999999865
No 492
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=88.17 E-value=0.6 Score=49.98 Aligned_cols=83 Identities=17% Similarity=0.229 Sum_probs=49.5
Q ss_pred EEEEcCCCCcHhHHHH-HHHHHhhhccCCCE-EEEEEeCCCC-CHHHHHHHHHHHhCCC--------CchhHHHH-----
Q 039180 131 IGVYGMGGIGKTTLVK-EFARRAIEDELYDM-VVFSEVTQSP-DIKQIQQEIAEKLGLE--------LSEEAEFR----- 194 (790)
Q Consensus 131 v~I~G~~G~GKTtLa~-~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~--------~~~~~~~~----- 194 (790)
++|.|..|+|||+||. .+.+.. .-+. ++++-+++.. .+.++.+.+...-... .+......
T Consensus 178 ~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~ 253 (515)
T 2r9v_A 178 ELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIAPY 253 (515)
T ss_dssp EEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHHHH
Confidence 7899999999999965 566543 2453 5677777654 4555666665432111 11111111
Q ss_pred HHHHHHHHHH-cCCcEEEEEeCCC
Q 039180 195 RASRMFERLK-NEKKILLILDNTW 217 (790)
Q Consensus 195 ~~~~l~~~l~-~~kr~LlVlDdv~ 217 (790)
....+.+.+. +|+.+||++||+.
T Consensus 254 ~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 254 AGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp HHHHHHHHHHTTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHcCCcEEEEeccHH
Confidence 1234445554 4799999999974
No 493
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=88.11 E-value=0.25 Score=51.59 Aligned_cols=25 Identities=36% Similarity=0.355 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.+.|.++|++|+|||++|+.+++..
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4568999999999999999999876
No 494
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.10 E-value=0.27 Score=45.69 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHH
Q 039180 129 NIIGVYGMGGIGKTTLVKEFARR 151 (790)
Q Consensus 129 ~vv~I~G~~G~GKTtLa~~~~~~ 151 (790)
-.|+++|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45889999999999999999865
No 495
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=88.05 E-value=0.17 Score=54.83 Aligned_cols=87 Identities=11% Similarity=0.070 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccCCCCChHHHHHHhHHHHHHHHHHHHHHHhhcccCCcccccceecC
Q 039180 46 EEMVEKWLVNANKRIEQAAKFIQDEEAANDGRCLMGLFPDWFARYQHGRKAETEKEALSKLREEAERFDNRISYPTIRED 125 (790)
Q Consensus 46 ~~~~~~w~~~~~~~~~~~ed~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 125 (790)
+..+..|..++-++...+|-.+|--+ .. .. ...+..+..++..+..+++++.+...+-. .. .
T Consensus 170 s~~i~~lr~~L~~~~a~iea~iDf~e-ed--------i~-~~~~~~l~~~i~~l~~~l~~~~~~~~~~~-~~-------r 231 (476)
T 3gee_A 170 SVRLGGLREQLIRSCALIELELDFSE-ED--------VE-FQSRDELTMQIETLRSEVNRLIDSYQHGR-IV-------S 231 (476)
T ss_dssp HHHHHHHHTHHHHHHHTTTTCSSCCS-SC--------CS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-------H
T ss_pred HHHHHHHHHHHHHHHHHhheecCCCc-cc--------cc-chhHHHHHHHHHHHHHHHHHHHHHHHhhH-hh-------c
Confidence 44556666666655554444443211 00 01 11234566777777777777654322111 00 0
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHH
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARR 151 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~ 151 (790)
.+++ |+|+|.+|+|||||...+...
T Consensus 232 ~~~k-V~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 232 EGVS-TVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp HCEE-EEEECCTTSSHHHHHHHCC--
T ss_pred CCCE-EEEECCCCCCHHHHHHHHhCC
Confidence 1343 899999999999999987765
No 496
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=87.86 E-value=0.27 Score=50.80 Aligned_cols=25 Identities=36% Similarity=0.494 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
=.+++|+|+.|.|||||++.+..-.
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3579999999999999999887543
No 497
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=87.84 E-value=0.31 Score=43.85 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHhHHHHHHHHHh
Q 039180 131 IGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 131 v~I~G~~G~GKTtLa~~~~~~~ 152 (790)
|+++|.+|+|||||+..+....
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999998653
No 498
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=87.74 E-value=0.27 Score=50.69 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 128 LNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 128 ~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
=.+++|+|+.|.|||||.+.++--.
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3579999999999999999998654
No 499
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=87.71 E-value=0.33 Score=45.13 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCcHhHHHHHHHHH
Q 039180 127 WLNIIGVYGMGGIGKTTLVKEFARR 151 (790)
Q Consensus 127 ~~~vv~I~G~~G~GKTtLa~~~~~~ 151 (790)
....|+|+|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3467899999999999999998865
No 500
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.67 E-value=0.33 Score=46.26 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=22.9
Q ss_pred CceeEEEEEcCCCCcHhHHHHHHHHHh
Q 039180 126 IWLNIIGVYGMGGIGKTTLVKEFARRA 152 (790)
Q Consensus 126 ~~~~vv~I~G~~G~GKTtLa~~~~~~~ 152 (790)
.....|.|+|.+|+|||||+..+....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345678999999999999999998754
Done!