BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039184
         (158 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
          Length = 176

 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/148 (39%), Positives = 79/148 (53%), Gaps = 3/148 (2%)

Query: 6   SSHPRNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDN-DLKRGDEISQSLVDXX 64
           SSH    KYDVFLSF+G DTR NF S LY  L ++ I TF D+ +L+ G   S  L    
Sbjct: 2   SSHT-ATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPI 60

Query: 65  XXXXXXXXXXXXXXXXXXWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGNFEDS 124
                             WCLDEL+ I++ +      V+P+FY V+P+HVR Q+G   + 
Sbjct: 61  EVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQ 120

Query: 125 FSK-LEEQFPDRMQTWRIALTEAANLSG 151
           F K    + P+++  WR ALT  A LSG
Sbjct: 121 FKKHASREDPEKVLKWRQALTNFAQLSG 148


>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
           Resistance Protein L6
 pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
           Resistance Protein L6
          Length = 204

 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 87/158 (55%), Gaps = 7/158 (4%)

Query: 2   ASSSSSHPRNN----KYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDND-LKRGDEI 56
           A S S++P  +    +Y+VFLSF+G DTR+ FT  LY +L +  I TF D+D L +G EI
Sbjct: 20  AISDSTNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEI 79

Query: 57  SQSLVDXXXXXXXXXXXXXXXXXXXXWCLDELLRILECK-TNYGQIVIPVFYRVDPSHVR 115
             +L+                     WCL EL  I+  +  +  +I++P+FY VDPS VR
Sbjct: 80  GPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVR 139

Query: 116 KQSGNFEDSFSKLEEQFPDR-MQTWRIALTEAANLSGF 152
            Q+G ++ +F K   +F  + +Q W+ AL +  +L G+
Sbjct: 140 HQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGW 177


>pdb|1WLN|A Chain A, Solution Structure Of The Fha Domain Of Mouse Afadin 6
          Length = 120

 Score = 28.5 bits (62), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 2  ASSSSSHPRNNKYDVFLSFKGEDTRDNFTSH-LYSALSQKGIETFIDNDLK 51
           SS SS P    Y V LS  G D+RD    + L  ++++ G E F DN ++
Sbjct: 1  GSSGSSGPEKLPYLVELSPDGSDSRDKPKLYRLQLSVTEVGTEKFDDNSIQ 51


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,061,204
Number of Sequences: 62578
Number of extensions: 136316
Number of successful extensions: 294
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 289
Number of HSP's gapped (non-prelim): 4
length of query: 158
length of database: 14,973,337
effective HSP length: 91
effective length of query: 67
effective length of database: 9,278,739
effective search space: 621675513
effective search space used: 621675513
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)