Query 039184
Match_columns 158
No_of_seqs 161 out of 1266
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 07:08:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039184.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039184hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03194 putative disease resi 100.0 2.4E-41 5.2E-46 253.7 12.6 133 9-155 22-156 (187)
2 PLN03210 Resistant to P. syrin 100.0 4E-39 8.8E-44 297.7 15.6 154 1-155 1-155 (1153)
3 smart00255 TIR Toll - interleu 99.9 7.7E-26 1.7E-30 162.9 12.7 135 13-148 1-139 (140)
4 PF01582 TIR: TIR domain; Int 99.9 1.2E-26 2.5E-31 168.6 3.9 129 16-144 1-140 (141)
5 PF13676 TIR_2: TIR domain; PD 99.8 2.2E-21 4.8E-26 133.1 2.8 93 16-116 1-93 (102)
6 KOG3678 SARM protein (with ste 99.4 4.9E-13 1.1E-17 112.8 7.3 126 8-139 607-751 (832)
7 PF08937 DUF1863: MTH538 TIR-l 98.9 2.5E-09 5.5E-14 76.6 5.7 89 14-107 1-107 (130)
8 PF08357 SEFIR: SEFIR domain; 98.4 2.2E-06 4.8E-11 62.4 8.6 103 15-117 2-130 (150)
9 PF10137 TIR-like: Predicted n 97.6 0.00023 5E-09 50.8 6.8 86 16-106 2-101 (125)
10 PF13271 DUF4062: Domain of un 96.2 0.027 5.9E-07 37.0 6.3 66 15-81 1-67 (83)
11 COG4916 Uncharacterized protei 95.2 0.025 5.5E-07 45.1 3.9 99 10-113 174-280 (329)
12 PF05014 Nuc_deoxyrib_tr: Nucl 95.0 0.18 3.9E-06 34.8 7.3 69 27-96 13-90 (113)
13 PF14359 DUF4406: Domain of un 93.5 0.9 2E-05 30.5 8.0 76 16-94 1-85 (92)
14 COG4271 Predicted nucleotide-b 92.3 0.48 1E-05 36.5 5.8 87 15-107 84-186 (233)
15 cd00860 ThrRS_anticodon ThrRS 87.6 3.5 7.6E-05 26.4 6.4 60 14-77 2-61 (91)
16 PF03129 HGTP_anticodon: Antic 82.5 5.6 0.00012 25.9 5.6 46 27-76 15-61 (94)
17 cd00738 HGTP_anticodon HGTP an 82.5 7.2 0.00016 25.0 6.1 60 14-77 2-64 (94)
18 PF14258 DUF4350: Domain of un 80.0 12 0.00025 23.2 6.6 60 31-102 8-67 (70)
19 cd00858 GlyRS_anticodon GlyRS 79.8 11 0.00023 26.2 6.5 63 11-78 24-88 (121)
20 COG4916 Uncharacterized protei 76.3 3.9 8.4E-05 32.9 3.7 97 12-111 5-107 (329)
21 PF10087 DUF2325: Uncharacteri 72.9 21 0.00046 23.6 6.3 58 28-86 10-68 (97)
22 cd00861 ProRS_anticodon_short 67.0 20 0.00044 23.0 5.2 47 27-77 17-64 (94)
23 cd02426 Pol_gamma_b_Cterm C-te 66.3 5.9 0.00013 28.1 2.5 45 14-58 28-78 (128)
24 cd00859 HisRS_anticodon HisRS 65.1 31 0.00066 21.4 5.9 59 14-76 2-60 (91)
25 PF03720 UDPG_MGDP_dh_C: UDP-g 64.0 10 0.00022 25.7 3.3 58 22-79 11-79 (106)
26 cd07363 45_DOPA_Dioxygenase Th 63.7 48 0.001 26.1 7.5 68 27-96 80-149 (253)
27 cd02042 ParA ParA and ParB of 62.3 41 0.00089 22.0 6.7 64 16-79 3-74 (104)
28 TIGR00418 thrS threonyl-tRNA s 62.2 30 0.00065 30.4 6.7 62 11-76 468-529 (563)
29 COG0400 Predicted esterase [Ge 59.2 35 0.00076 26.3 5.9 57 8-65 141-199 (207)
30 COG3613 Nucleoside 2-deoxyribo 57.6 52 0.0011 24.8 6.3 76 27-106 19-105 (172)
31 PRK09194 prolyl-tRNA synthetas 57.3 22 0.00048 31.5 5.0 64 12-79 467-533 (565)
32 cd01423 MGS_CPS_I_III Methylgl 55.5 19 0.0004 24.7 3.5 29 16-46 3-31 (116)
33 cd03364 TOPRIM_DnaG_primases T 53.7 22 0.00048 22.5 3.4 31 15-45 45-75 (79)
34 PRK12325 prolyl-tRNA synthetas 53.0 35 0.00076 29.2 5.4 63 13-79 345-410 (439)
35 CHL00201 syh histidine-tRNA sy 51.6 57 0.0012 27.8 6.5 61 12-76 324-384 (430)
36 cd07373 2A5CPDO_A The alpha su 50.8 1.3E+02 0.0027 24.0 8.3 76 27-105 90-172 (271)
37 cd00862 ProRS_anticodon_zinc P 50.7 24 0.00052 26.9 3.7 48 12-59 9-63 (202)
38 PF03358 FMN_red: NADPH-depend 50.7 85 0.0018 22.0 6.8 66 27-95 17-96 (152)
39 PRK14938 Ser-tRNA(Thr) hydrola 49.5 74 0.0016 27.1 6.6 59 11-73 272-331 (387)
40 PRK08661 prolyl-tRNA synthetas 48.7 36 0.00078 29.5 4.9 61 13-77 287-354 (477)
41 PRK03991 threonyl-tRNA synthet 48.7 29 0.00062 31.3 4.3 44 13-57 499-543 (613)
42 PRK14799 thrS threonyl-tRNA sy 47.3 74 0.0016 28.3 6.7 59 13-76 438-497 (545)
43 PLN03194 putative disease resi 47.0 92 0.002 23.8 6.3 63 40-106 25-88 (187)
44 PF02310 B12-binding: B12 bind 45.9 89 0.0019 20.9 6.2 69 30-107 17-86 (121)
45 PRK12305 thrS threonyl-tRNA sy 44.9 84 0.0018 27.7 6.7 60 13-76 476-535 (575)
46 PRK00413 thrS threonyl-tRNA sy 44.8 76 0.0017 28.4 6.5 60 13-76 539-598 (638)
47 PF09837 DUF2064: Uncharacteri 44.5 1.1E+02 0.0023 21.4 8.2 86 10-105 7-95 (122)
48 cd01424 MGS_CPS_II Methylglyox 44.3 35 0.00077 22.9 3.4 60 16-77 3-76 (110)
49 PRK05339 PEP synthetase regula 43.2 76 0.0017 25.6 5.6 69 32-103 158-244 (269)
50 PLN02530 histidine-tRNA ligase 43.0 91 0.002 27.1 6.5 61 12-76 400-460 (487)
51 PF03618 Kinase-PPPase: Kinase 42.6 92 0.002 24.9 5.9 69 32-103 152-240 (255)
52 PF03437 BtpA: BtpA family; I 41.0 51 0.0011 26.4 4.3 104 34-144 134-253 (254)
53 PRK10569 NAD(P)H-dependent FMN 40.5 1.1E+02 0.0024 23.0 6.0 82 27-111 17-111 (191)
54 PRK15057 UDP-glucose 6-dehydro 40.1 64 0.0014 27.2 5.0 51 22-72 310-365 (388)
55 COG1658 Small primase-like pro 38.8 77 0.0017 22.6 4.5 55 14-69 30-84 (127)
56 PF13289 SIR2_2: SIR2-like dom 38.7 98 0.0021 21.2 5.1 9 29-37 76-84 (143)
57 PRK09271 flavodoxin; Provision 38.5 1.5E+02 0.0032 21.3 6.7 29 16-46 6-34 (160)
58 cd08584 PI-PLCc_GDPD_SF_unchar 38.5 81 0.0017 24.2 4.9 61 15-82 103-163 (192)
59 COG1058 CinA Predicted nucleot 38.1 50 0.0011 26.5 3.8 43 29-75 22-67 (255)
60 PRK12444 threonyl-tRNA synthet 37.6 1.2E+02 0.0026 27.3 6.6 62 12-76 540-601 (639)
61 COG0710 AroD 3-dehydroquinate 37.4 1.8E+02 0.0039 23.0 6.8 75 27-106 78-155 (231)
62 COG1168 MalY Bifunctional PLP- 37.3 86 0.0019 26.7 5.2 46 58-103 148-195 (388)
63 PF00350 Dynamin_N: Dynamin fa 37.1 1.2E+02 0.0027 21.3 5.6 46 58-106 120-165 (168)
64 TIGR00334 5S_RNA_mat_M5 ribonu 36.8 70 0.0015 24.2 4.2 50 27-79 35-84 (174)
65 PF05636 HIGH_NTase1: HIGH Nuc 35.8 47 0.001 28.2 3.5 59 50-113 13-80 (388)
66 TIGR03026 NDP-sugDHase nucleot 35.2 86 0.0019 26.4 5.0 57 18-74 321-384 (411)
67 PRK02551 flavoprotein NrdI; Pr 34.9 1.8E+02 0.004 21.3 7.5 100 16-131 7-117 (154)
68 cd06366 PBP1_GABAb_receptor Li 34.4 1.2E+02 0.0025 24.3 5.6 59 16-75 138-201 (350)
69 COG1852 Uncharacterized conser 33.6 1.5E+02 0.0032 23.0 5.5 54 29-96 121-174 (209)
70 PF09152 DUF1937: Domain of un 33.5 86 0.0019 22.1 4.0 64 32-95 31-108 (116)
71 PF12146 Hydrolase_4: Putative 32.6 1.2E+02 0.0027 19.2 4.4 37 12-49 15-51 (79)
72 cd06340 PBP1_ABC_ligand_bindin 32.4 2.3E+02 0.0051 22.7 7.1 60 15-75 146-206 (347)
73 PF10443 RNA12: RNA12 protein; 31.6 1.3E+02 0.0028 26.1 5.5 30 102-131 365-395 (431)
74 TIGR03567 FMN_reduc_SsuE FMN r 31.6 1.7E+02 0.0037 21.3 5.6 54 28-82 17-80 (171)
75 TIGR00409 proS_fam_II prolyl-t 31.1 40 0.00087 30.0 2.5 63 13-79 473-538 (568)
76 PF09886 DUF2113: Uncharacteri 31.0 2.4E+02 0.0051 21.6 6.3 54 24-94 128-184 (188)
77 PF13662 Toprim_4: Toprim doma 30.9 44 0.00095 21.2 2.1 25 40-65 47-71 (81)
78 PF05985 EutC: Ethanolamine am 30.8 62 0.0014 25.6 3.2 46 27-77 123-173 (237)
79 TIGR02298 HpaD_Fe 3,4-dihydrox 30.8 2.8E+02 0.0061 22.2 7.7 77 27-105 96-178 (282)
80 PF01990 ATP-synt_F: ATP synth 30.7 1.2E+02 0.0027 19.8 4.4 47 33-81 9-55 (95)
81 PRK08155 acetolactate synthase 30.7 1.5E+02 0.0032 26.1 5.9 36 28-67 14-49 (564)
82 PRK07933 thymidylate kinase; V 30.6 1.4E+02 0.0031 22.7 5.2 31 17-47 2-34 (213)
83 TIGR01753 flav_short flavodoxi 30.5 1.8E+02 0.0038 19.8 7.4 56 16-81 4-59 (140)
84 PRK05569 flavodoxin; Provision 30.5 1.9E+02 0.004 20.0 7.3 56 16-81 7-62 (141)
85 PRK13660 hypothetical protein; 30.3 2.4E+02 0.0052 21.3 8.9 75 28-106 56-137 (182)
86 PF09419 PGP_phosphatase: Mito 30.3 1.5E+02 0.0033 22.1 5.1 47 36-82 35-91 (168)
87 PF00009 GTP_EFTU: Elongation 29.8 2E+02 0.0043 21.0 5.8 35 51-85 77-112 (188)
88 COG3340 PepE Peptidase E [Amin 29.8 2E+02 0.0043 22.6 5.8 68 16-87 36-104 (224)
89 PF01113 DapB_N: Dihydrodipico 29.7 1.9E+02 0.004 19.9 5.3 9 14-22 68-76 (124)
90 TIGR00177 molyb_syn molybdenum 29.4 86 0.0019 22.3 3.6 46 27-73 26-73 (144)
91 cd06371 PBP1_sensory_GC_DEF_li 29.3 3.2E+02 0.007 22.4 7.9 53 28-80 147-202 (382)
92 KOG1954 Endocytosis/signaling 29.2 1.2E+02 0.0025 26.3 4.7 54 50-106 165-218 (532)
93 cd00138 PLDc Phospholipase D. 28.9 2E+02 0.0042 20.5 5.5 24 53-76 19-42 (176)
94 cd01857 HSR1_MMR1 HSR1/MMR1. 28.9 2E+02 0.0042 20.0 5.4 21 59-79 4-24 (141)
95 cd04142 RRP22 RRP22 subfamily. 28.9 2.4E+02 0.0053 20.9 6.3 54 60-116 74-130 (198)
96 PF01976 DUF116: Protein of un 28.7 2.4E+02 0.0052 20.7 6.8 84 8-108 56-139 (158)
97 cd06352 PBP1_NPR_GC_like Ligan 28.5 1.5E+02 0.0032 24.1 5.3 52 16-68 140-195 (389)
98 cd00532 MGS-like MGS-like doma 28.0 93 0.002 21.1 3.4 60 16-77 2-77 (112)
99 TIGR00408 proS_fam_I prolyl-tR 27.3 1.3E+02 0.0027 26.2 4.8 61 12-77 281-348 (472)
100 PF08477 Miro: Miro-like prote 26.9 1.7E+02 0.0037 19.1 4.6 20 60-79 67-86 (119)
101 PLN02908 threonyl-tRNA synthet 26.8 2.2E+02 0.0047 26.0 6.4 60 13-76 589-648 (686)
102 PRK11921 metallo-beta-lactamas 26.8 3.8E+02 0.0082 22.4 7.9 74 27-106 262-339 (394)
103 PF14528 LAGLIDADG_3: LAGLIDAD 26.6 1E+02 0.0023 19.0 3.3 31 15-47 21-51 (77)
104 PF13155 Toprim_2: Toprim-like 26.5 1.1E+02 0.0024 19.7 3.5 38 30-68 35-75 (96)
105 PRK08306 dipicolinate synthase 26.3 98 0.0021 25.0 3.8 52 22-76 9-65 (296)
106 PF07454 SpoIIP: Stage II spor 26.3 83 0.0018 25.3 3.3 40 10-49 70-132 (268)
107 cd03146 GAT1_Peptidase_E Type 26.2 2.3E+02 0.005 21.5 5.7 51 16-72 35-86 (212)
108 COG2342 Predicted extracellula 26.2 1.3E+02 0.0028 24.7 4.3 44 58-107 33-79 (300)
109 COG0124 HisS Histidyl-tRNA syn 25.9 2.9E+02 0.0063 23.9 6.7 59 11-73 333-392 (429)
110 PRK02797 4-alpha-L-fucosyltran 25.9 65 0.0014 26.7 2.6 16 133-148 304-319 (322)
111 KOG0117 Heterogeneous nuclear 25.7 88 0.0019 27.3 3.4 60 16-94 128-187 (506)
112 PF07429 Glyco_transf_56: 4-al 25.6 51 0.0011 27.7 2.0 15 133-147 343-357 (360)
113 cd04886 ACT_ThrD-II-like C-ter 25.4 1.5E+02 0.0031 17.3 3.7 32 12-45 41-72 (73)
114 cd02951 SoxW SoxW family; SoxW 25.4 2.2E+02 0.0047 19.1 5.7 31 57-89 3-34 (125)
115 PRK11064 wecC UDP-N-acetyl-D-m 25.3 1.4E+02 0.003 25.4 4.7 58 18-75 328-395 (415)
116 PRK10628 LigB family dioxygena 25.2 3.5E+02 0.0076 21.5 6.6 77 18-98 62-140 (246)
117 KOG2792 Putative cytochrome C 25.1 90 0.002 25.2 3.2 31 82-112 153-187 (280)
118 PF01380 SIS: SIS domain SIS d 24.6 1.2E+02 0.0026 20.3 3.5 53 16-79 58-110 (131)
119 KOG4132 Uroporphyrinogen III s 24.5 1.3E+02 0.0027 24.0 3.9 49 31-81 146-200 (260)
120 PF08132 AdoMetDC_leader: S-ad 24.5 74 0.0016 18.9 2.0 24 3-26 10-33 (54)
121 PRK13883 conjugal transfer pro 24.4 1.8E+02 0.0039 21.4 4.5 32 14-48 53-84 (151)
122 cd05008 SIS_GlmS_GlmD_1 SIS (S 24.1 1.2E+02 0.0025 20.5 3.4 27 16-45 51-77 (126)
123 cd06335 PBP1_ABC_ligand_bindin 23.9 3.8E+02 0.0082 21.4 7.0 48 15-62 140-188 (347)
124 PRK03767 NAD(P)H:quinone oxido 23.9 3.1E+02 0.0068 20.4 6.4 63 27-94 16-94 (200)
125 cd04141 Rit_Rin_Ric Rit/Rin/Ri 23.6 2.8E+02 0.0061 19.8 6.6 63 52-116 58-121 (172)
126 PF00258 Flavodoxin_1: Flavodo 23.6 2.3E+02 0.005 19.5 4.9 45 27-76 11-55 (143)
127 PRK05568 flavodoxin; Provision 23.2 2.6E+02 0.0056 19.2 7.3 56 16-81 7-62 (142)
128 PF07283 TrbH: Conjugal transf 23.2 2E+02 0.0042 20.4 4.3 33 14-49 25-57 (121)
129 PF09413 DUF2007: Domain of un 23.2 82 0.0018 19.0 2.2 22 28-49 10-31 (67)
130 COG0431 Predicted flavoprotein 23.1 3.2E+02 0.0069 20.2 6.2 54 27-81 17-81 (184)
131 cd06342 PBP1_ABC_LIVBP_like Ty 23.1 3.7E+02 0.008 21.0 7.6 51 16-67 138-189 (334)
132 PRK09701 D-allose transporter 23.0 2.7E+02 0.0059 22.0 5.8 15 101-115 296-310 (311)
133 PF03808 Glyco_tran_WecB: Glyc 22.9 3.1E+02 0.0067 20.0 7.5 18 29-46 36-53 (172)
134 COG1806 Uncharacterized protei 22.8 1.8E+02 0.004 23.5 4.6 68 33-103 160-248 (273)
135 PF00994 MoCF_biosynth: Probab 22.4 1.6E+02 0.0034 20.7 3.8 62 27-88 16-78 (144)
136 cd05710 SIS_1 A subgroup of th 22.1 1.4E+02 0.003 20.3 3.4 27 16-45 52-78 (120)
137 PF14162 YozD: YozD-like prote 22.0 1.2E+02 0.0025 18.3 2.5 27 12-44 2-28 (57)
138 COG2130 Putative NADP-dependen 21.8 2.5E+02 0.0055 23.4 5.3 61 13-81 196-257 (340)
139 cd06386 PBP1_NPR_C_like Ligand 21.8 2.7E+02 0.0058 23.0 5.7 45 30-74 157-202 (387)
140 PLN02924 thymidylate kinase 21.7 3.3E+02 0.0071 20.9 5.8 30 16-45 17-48 (220)
141 cd06328 PBP1_SBP_like_2 Peripl 21.6 4.1E+02 0.0088 21.1 6.6 58 15-73 138-198 (333)
142 cd00154 Rab Rab family. Rab G 21.6 2.6E+02 0.0056 18.7 5.3 28 52-79 57-85 (159)
143 cd06350 PBP1_GPCR_family_C_lik 21.6 2.8E+02 0.0061 21.9 5.6 42 27-68 174-217 (348)
144 PTZ00445 p36-lilke protein; Pr 21.6 2.7E+02 0.0058 21.9 5.2 20 27-46 28-47 (219)
145 PF02337 Gag_p10: Retroviral G 21.3 86 0.0019 21.0 2.1 20 27-46 8-27 (90)
146 PLN02734 glycyl-tRNA synthetas 21.2 1.2E+02 0.0026 27.9 3.6 45 12-57 571-616 (684)
147 cd03411 Ferrochelatase_N Ferro 21.1 3.3E+02 0.0071 19.6 6.8 66 27-94 71-143 (159)
148 PF09673 TrbC_Ftype: Type-F co 21.0 2.9E+02 0.0062 18.9 5.1 73 16-109 2-78 (113)
149 PRK15467 ethanolamine utilizat 20.9 3.2E+02 0.0068 19.4 6.5 31 51-81 44-79 (158)
150 cd06370 PBP1_Speract_GC_like L 20.7 2.1E+02 0.0045 23.7 4.8 27 27-53 150-176 (404)
151 cd06346 PBP1_ABC_ligand_bindin 20.5 3.9E+02 0.0084 21.0 6.2 42 27-68 151-192 (312)
152 cd00758 MoCF_BD MoCF_BD: molyb 20.4 2E+02 0.0043 20.0 4.0 44 27-70 18-62 (133)
153 PF14792 DNA_pol_B_palm: DNA p 20.4 1.3E+02 0.0027 20.7 2.9 32 13-44 42-77 (112)
154 COG0125 Tmk Thymidylate kinase 20.2 2.5E+02 0.0054 21.6 4.8 98 16-114 4-141 (208)
155 PF03205 MobB: Molybdopterin g 20.1 2E+02 0.0042 20.4 4.0 28 17-45 5-32 (140)
156 TIGR00441 gmhA phosphoheptose 20.0 1.7E+02 0.0036 21.0 3.6 64 14-92 80-145 (154)
No 1
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=2.4e-41 Score=253.66 Aligned_cols=133 Identities=32% Similarity=0.586 Sum_probs=121.8
Q ss_pred CCCCcccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCC-CCCCccchHHHHHHhHhcceEEEEeecCCcCChhHHHH
Q 039184 9 PRNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDND-LKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDE 87 (158)
Q Consensus 9 ~~~~~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~E 87 (158)
+....|||||||+++|+|+.|+++|+.+|+++||++|+|+. +.+|+.+.+.|.+||++|++.|+|+||+|..|.||++|
T Consensus 22 ~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdE 101 (187)
T PLN03194 22 SSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHE 101 (187)
T ss_pred CCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHH
Confidence 33567999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCceeeEEEeeCCcccccc-cCchHHHHHHHHhcchhHHHHHHHHHHHhhcccceeec
Q 039184 88 LLRILECKTNYGQIVIPVFYRVDPSHVRKQ-SGNFEDSFSKLEEQFPDRMQTWRIALTEAANLSGFDSH 155 (158)
Q Consensus 88 l~~a~~~~~~~~~~iiPI~~~v~p~~v~~~-~~~~~~~f~~~~~~~~~~~~~W~~al~~i~~~~G~~~~ 155 (158)
|..++++. ..||||||+|+|++|+.| .+.. -.+++++||+||+++++++|+.++
T Consensus 102 L~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~~----------~~e~v~~Wr~AL~~va~l~G~~~~ 156 (187)
T PLN03194 102 LALIMESK----KRVIPIFCDVKPSQLRVVDNGTC----------PDEEIRRFNWALEEAKYTVGLTFD 156 (187)
T ss_pred HHHHHHcC----CEEEEEEecCCHHHhhccccCCC----------CHHHHHHHHHHHHHHhccccccCC
Confidence 99998763 379999999999999996 3321 168999999999999999999774
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4e-39 Score=297.72 Aligned_cols=154 Identities=51% Similarity=0.852 Sum_probs=145.7
Q ss_pred CCCCCCCCCCCCcccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeecCCcC
Q 039184 1 MASSSSSHPRNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYAS 80 (158)
Q Consensus 1 ~~~s~~s~~~~~~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~ 80 (158)
|++|| |+++.++|||||||+++|+|+.|++||+.+|.++||++|.|+.+..|+.+..++.+||++|++.|+|+|++|+.
T Consensus 1 ~~~~~-~~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~ 79 (1153)
T PLN03210 1 MASSS-SSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYAS 79 (1153)
T ss_pred CCCCC-CCCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCccc
Confidence 66664 44457899999999999999999999999999999999998779999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHhhcCCceeeEEEeeCCcccccccCchHHHHHHHHhcc-hhHHHHHHHHHHHhhcccceeec
Q 039184 81 SSWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGNFEDSFSKLEEQF-PDRMQTWRIALTEAANLSGFDSH 155 (158)
Q Consensus 81 S~wc~~El~~a~~~~~~~~~~iiPI~~~v~p~~v~~~~~~~~~~f~~~~~~~-~~~~~~W~~al~~i~~~~G~~~~ 155 (158)
|.||++||.+++++.++.+..||||||+|+|+||+.|+|.||++|.++.+.. +|++++||+||++|++++|+++.
T Consensus 80 s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~ 155 (1153)
T PLN03210 80 SSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQ 155 (1153)
T ss_pred chHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecC
Confidence 9999999999999998899999999999999999999999999999998876 89999999999999999999874
No 3
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.94 E-value=7.7e-26 Score=162.86 Aligned_cols=135 Identities=42% Similarity=0.724 Sum_probs=112.9
Q ss_pred cccEEEeccc-CcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHH
Q 039184 13 KYDVFLSFKG-EDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRI 91 (158)
Q Consensus 13 ~~DVFISys~-~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a 91 (158)
+|||||||++ ++..+.|+.+|...|...|+.+|.|+....|.... +|.++|++|+++|+|+||+|+.|+||..|+..+
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~~-~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a 79 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLE-EIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA 79 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchHH-HHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence 4999999999 34457899999999999999999998733333333 999999999999999999999999999999999
Q ss_pred HHHHhh-cCCceeeEEEeeCCcccccccCchHHHHHHHHhcc-hhHH-HHHHHHHHHhhc
Q 039184 92 LECKTN-YGQIVIPVFYRVDPSHVRKQSGNFEDSFSKLEEQF-PDRM-QTWRIALTEAAN 148 (158)
Q Consensus 92 ~~~~~~-~~~~iiPI~~~v~p~~v~~~~~~~~~~f~~~~~~~-~~~~-~~W~~al~~i~~ 148 (158)
+++..+ ...+||||+++..|.++..+.+.++..+...+... +++. +.|+.++..+++
T Consensus 80 ~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~~fW~~~~~~l~~ 139 (140)
T smart00255 80 LENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKERFWKKALYAVPS 139 (140)
T ss_pred HHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhHHHHHHHHHHhcc
Confidence 987644 67899999999889889999999999998875444 2332 689999887764
No 4
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.93 E-value=1.2e-26 Score=168.59 Aligned_cols=129 Identities=36% Similarity=0.596 Sum_probs=112.9
Q ss_pred EEEecccCcCchhHHHHHHHHHhcC--CceEEeeCC-CCCCccchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHHH
Q 039184 16 VFLSFKGEDTRDNFTSHLYSALSQK--GIETFIDND-LKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRIL 92 (158)
Q Consensus 16 VFISys~~D~~~~fv~~L~~~L~~~--gi~v~~d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~ 92 (158)
|||||++.+.+++|+.+|...|++. |+++|++++ +.+|..+.++|.++|++|+++|+|+|++|+.|+||+.|+..|+
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 8999999333689999999999999 999999998 9999999999999999999999999999999999999999999
Q ss_pred HHHhhc--CCceeeEEEeeCCcccc-cccCchHHHHHHHHhcc-----hhHHHHHHHHHH
Q 039184 93 ECKTNY--GQIVIPVFYRVDPSHVR-KQSGNFEDSFSKLEEQF-----PDRMQTWRIALT 144 (158)
Q Consensus 93 ~~~~~~--~~~iiPI~~~v~p~~v~-~~~~~~~~~f~~~~~~~-----~~~~~~W~~al~ 144 (158)
++.... ...|+||++++.+.+++ .+.+.|+..|....... .+....|+.++.
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 997553 48899999999999999 68888999998877765 246889988875
No 5
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.83 E-value=2.2e-21 Score=133.07 Aligned_cols=93 Identities=34% Similarity=0.625 Sum_probs=77.6
Q ss_pred EEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHHHHHH
Q 039184 16 VFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRILECK 95 (158)
Q Consensus 16 VFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~~~~ 95 (158)
|||||+++| ..+|..|...|++.|+++|+|..+.+|+.+.+.|.++|++|+++|+++||+|.+|+||..|+..|.+
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~-- 76 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK-- 76 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC--
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH--
Confidence 899999999 4799999999999999999996699999999999999999999999999999999999999999943
Q ss_pred hhcCCceeeEEEeeCCccccc
Q 039184 96 TNYGQIVIPVFYRVDPSHVRK 116 (158)
Q Consensus 96 ~~~~~~iiPI~~~v~p~~v~~ 116 (158)
.+.+||||.+ ++.+++.
T Consensus 77 --~~~~iipv~~--~~~~~p~ 93 (102)
T PF13676_consen 77 --RGKPIIPVRL--DPCELPG 93 (102)
T ss_dssp --TSESEEEEEC--SGGGS-G
T ss_pred --CCCEEEEEEE--CCcCCCH
Confidence 4458999994 4455544
No 6
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=99.41 E-value=4.9e-13 Score=112.76 Aligned_cols=126 Identities=21% Similarity=0.339 Sum_probs=104.5
Q ss_pred CCCCCcccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCC-CCCCccchHHHHHHhHhcceEEEEeecCCcC------
Q 039184 8 HPRNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDND-LKRGDEISQSLVDAIEASSISIIIFSESYAS------ 80 (158)
Q Consensus 8 ~~~~~~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~------ 80 (158)
.+-+++.||||||+..- ...+++.|.-.|+-+|++||+|-+ +..|.. .+.+.+.|..++.+|+|+||+.+.
T Consensus 607 a~~skq~DVFISYRRst-GnQLASLiKV~LQL~GyrVFIDVdKL~AGKF-dssLlkni~aAkhFiLVLtP~sLDr~lnD~ 684 (832)
T KOG3678|consen 607 AMLSKQIDVFISYRRST-GNQLASLIKVLLQLRGYRVFIDVDKLYAGKF-DSSLLKNIQAAKHFILVLTPNSLDRLLNDD 684 (832)
T ss_pred ccccCCcceEEEeeccc-cHHHHHHHHHHHHhcCceEEEehhhhhcccc-cHHHHHHHHhhheeEEEeCcchHHHHhccc
Confidence 34567899999998765 468999999999999999999999 999975 458889999999999999999763
Q ss_pred --ChhHHHHHHHHHHHHhhcCCceeeEEEe---------eCCcccccccCchHHHHHHHHhcc-hhHHHHH
Q 039184 81 --SSWCLDELLRILECKTNYGQIVIPVFYR---------VDPSHVRKQSGNFEDSFSKLEEQF-PDRMQTW 139 (158)
Q Consensus 81 --S~wc~~El~~a~~~~~~~~~~iiPI~~~---------v~p~~v~~~~~~~~~~f~~~~~~~-~~~~~~W 139 (158)
-+|...|+..|+++.+ .|||||-. +.|.|++..+..-|..|.+.++.. .+|+.++
T Consensus 685 nCeDWVHKEl~~Afe~~K----NIiPI~D~aFE~Pt~ed~iPnDirmi~kyNGvKWvHdYQdA~maKvvRF 751 (832)
T KOG3678|consen 685 NCEDWVHKELKCAFEHQK----NIIPIFDTAFEFPTKEDQIPNDIRMITKYNGVKWVHDYQDACMAKVVRF 751 (832)
T ss_pred cHHHHHHHHHHHHHHhcC----CeeeeecccccCCCchhcCcHHHHHHHhccCeeeehhhHHHHHHHHHHH
Confidence 4788889999988876 89999843 667778777777788888888766 6677766
No 7
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=98.91 E-value=2.5e-09 Score=76.60 Aligned_cols=89 Identities=26% Similarity=0.452 Sum_probs=48.8
Q ss_pred ccEEEecccCcCchhHHHHHHHHHhcC-------CceE-Ee---------eCC-CCCCccchHHHHHHhHhcceEEEEee
Q 039184 14 YDVFLSFKGEDTRDNFTSHLYSALSQK-------GIET-FI---------DND-LKRGDEISQSLVDAIEASSISIIIFS 75 (158)
Q Consensus 14 ~DVFISys~~D~~~~fv~~L~~~L~~~-------gi~v-~~---------d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS 75 (158)
|.|||||++.|. ...+..|...+... ++.. +. +.. ....+.+...|.+.|.+|+++||+++
T Consensus 1 ~~vFIS~~~~d~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDD-DWYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------TH-H-HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCc-HHHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 579999999984 34777777777663 2211 11 111 22344788899999999999999999
Q ss_pred cCCcCChhHHHHHHHHHHHHhhcCCceeeEEE
Q 039184 76 ESYASSSWCLDELLRILECKTNYGQIVIPVFY 107 (158)
Q Consensus 76 ~~~~~S~wc~~El~~a~~~~~~~~~~iiPI~~ 107 (158)
++...|+|+..|+..|++. +..||.|.+
T Consensus 80 ~~T~~s~wV~~EI~~A~~~----~~~Ii~V~~ 107 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALKK----GKPIIGVYL 107 (130)
T ss_dssp TT----HHHHHHHHHHTTT-------EEEEET
T ss_pred CCcccCcHHHHHHHHHHHC----CCCEEEEEC
Confidence 9999999999999999764 448888875
No 8
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=98.40 E-value=2.2e-06 Score=62.38 Aligned_cols=103 Identities=18% Similarity=0.326 Sum_probs=71.0
Q ss_pred cEEEecccCcC-chhHHHHHHHHHhcC-CceEEeeCC-CC--CCccchHHHHHHhHhcceEEEEeecCCcC---------
Q 039184 15 DVFLSFKGEDT-RDNFTSHLYSALSQK-GIETFIDND-LK--RGDEISQSLVDAIEASSISIIIFSESYAS--------- 80 (158)
Q Consensus 15 DVFISys~~D~-~~~fv~~L~~~L~~~-gi~v~~d~~-i~--~G~~~~~~i~~~i~~s~~~I~vlS~~~~~--------- 80 (158)
-|||||++... ....|..|+..|++. |+.|.+|.. .. ++..+..=+.+.+++++.+|+|.||.+..
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~~~~~~~~~~~~ 81 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGYKERYDKKADER 81 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccchhHHHHHhhccC
Confidence 39999998543 246799999999999 999999998 63 36677777888899999999999965421
Q ss_pred ----ChhHHHH-HHHHHHHH------hhcCCceeeEEE-eeCCcccccc
Q 039184 81 ----SSWCLDE-LLRILECK------TNYGQIVIPVFY-RVDPSHVRKQ 117 (158)
Q Consensus 81 ----S~wc~~E-l~~a~~~~------~~~~~~iiPI~~-~v~p~~v~~~ 117 (158)
...+..+ +..++... .....+.|||++ ..++.+|+..
T Consensus 82 ~~~~~~~~~~d~f~~~l~~~l~~~~~~~~~~kfi~v~f~~~~~~~iP~~ 130 (150)
T PF08357_consen 82 EGGVGTEPQGDLFIAALNLILRDFYQGENNKKFIPVYFDYSDEEDIPEP 130 (150)
T ss_pred CCCCCCCcchhHHHHHHHHHHHHHhccccccceeEEEeCCCCcccCCHH
Confidence 1111111 11222221 234568999998 4566666643
No 9
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=97.64 E-value=0.00023 Score=50.84 Aligned_cols=86 Identities=19% Similarity=0.210 Sum_probs=65.9
Q ss_pred EEEecccCcCchhHHHHHHHHHhcCCceEEeeCC-CCCCccchHHHHHHhHhcceEEEEeecCCc-------------CC
Q 039184 16 VFLSFKGEDTRDNFTSHLYSALSQKGIETFIDND-LKRGDEISQSLVDAIEASSISIIIFSESYA-------------SS 81 (158)
Q Consensus 16 VFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~-------------~S 81 (158)
|||.|+ +| ...+..+...|+..|+.+-+=.. ...|..+.+.+.+.+.+|+..|+++||+=. ..
T Consensus 2 VFIvhg-~~--~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD~~~~~~~~~~~~~~aR 78 (125)
T PF10137_consen 2 VFIVHG-RD--LAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDDIGYSRGEEEDLQPRAR 78 (125)
T ss_pred EEEEeC-CC--HHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcccccccccCCccccccccc
Confidence 899998 55 47889999999988887655444 799999999999999999999999998521 23
Q ss_pred hhHHHHHHHHHHHHhhcCCceeeEE
Q 039184 82 SWCLDELLRILECKTNYGQIVIPVF 106 (158)
Q Consensus 82 ~wc~~El~~a~~~~~~~~~~iiPI~ 106 (158)
.....|+..++.+. +..+++.+.
T Consensus 79 ~NVifE~G~f~g~L--Gr~rv~~l~ 101 (125)
T PF10137_consen 79 QNVIFELGLFIGKL--GRERVFILV 101 (125)
T ss_pred cceeehhhHHHhhc--CcceEEEEE
Confidence 44677999988753 223555544
No 10
>PF13271 DUF4062: Domain of unknown function (DUF4062)
Probab=96.15 E-value=0.027 Score=37.00 Aligned_cols=66 Identities=20% Similarity=0.222 Sum_probs=49.0
Q ss_pred cEEEecccCcCchhHHHHHHHHHhcCCceEEeeCCC-CCCccchHHHHHHhHhcceEEEEeecCCcCC
Q 039184 15 DVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDL-KRGDEISQSLVDAIEASSISIIIFSESYASS 81 (158)
Q Consensus 15 DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i-~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S 81 (158)
.||||-.-.|. +.--..|.+.|.+.|..+..-+.+ ..+....+.+.+.|++|+++|.++...|-..
T Consensus 1 rVFiSSt~~Dl-~~eR~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG~~ 67 (83)
T PF13271_consen 1 RVFISSTFRDL-KEERDALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNRYGSV 67 (83)
T ss_pred CEEEecChhhH-HHHHHHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccccCCC
Confidence 38999988886 344567777787778766543333 3356666788899999999999999988643
No 11
>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]
Probab=95.23 E-value=0.025 Score=45.08 Aligned_cols=99 Identities=20% Similarity=0.172 Sum_probs=69.4
Q ss_pred CCCcccEEEecccCcCchhHHHHHHHHHhc--CCceEEeeCC----CCCCccchHHHHHHhH-hcceEEEEeecCCcCCh
Q 039184 10 RNNKYDVFLSFKGEDTRDNFTSHLYSALSQ--KGIETFIDND----LKRGDEISQSLVDAIE-ASSISIIIFSESYASSS 82 (158)
Q Consensus 10 ~~~~~DVFISys~~D~~~~fv~~L~~~L~~--~gi~v~~d~~----i~~G~~~~~~i~~~i~-~s~~~I~vlS~~~~~S~ 82 (158)
..+.||+=|||.++- +.+|+....+++. ....-|+|.. +.+|+ +.+-+...-. .|++.++++..+|....
T Consensus 174 ~~~~~DiG~SFaGEA--R~LVEqV~~E~~~~~~p~~~FYD~~~~~~L~~~s-L~~~L~~~Y~~rC~~~~VF~~~~Y~~K~ 250 (329)
T COG4916 174 SEKPVDSGISFAGEA--RNLVEQVQTEHSGLDIPTRRFYDLLVAHPLYPGS-LVSTLDPGYDIRCVVTTVFNTGSYICKS 250 (329)
T ss_pred cccccceeeEeehhh--hhHHHHHHHhhhcccCCceeeeechhhccccCcc-HHHhcccccCceEEEEEEEeCCceEEee
Confidence 467899999999986 5899999999984 4567788865 33443 3333333333 69999999999999999
Q ss_pred hHHHHHHHHHHHHhhcCCceeeEEE-eeCCcc
Q 039184 83 WCLDELLRILECKTNYGQIVIPVFY-RVDPSH 113 (158)
Q Consensus 83 wc~~El~~a~~~~~~~~~~iiPI~~-~v~p~~ 113 (158)
||..|....-.- ..-..+.||.| +++..-
T Consensus 251 ~c~~E~~~~r~~--~~~d~~~rI~~~~~d~~a 280 (329)
T COG4916 251 TCHIEGLEGRLN--PILDTGFRIKYLYADNIA 280 (329)
T ss_pred eeccchhhcccc--ccccccceEEEEecCCcc
Confidence 999998766332 12335667766 333333
No 12
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=94.96 E-value=0.18 Score=34.77 Aligned_cols=69 Identities=19% Similarity=0.177 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHhcCCceEEeeCC--CC---CCccchHHH----HHHhHhcceEEEEeecCCcCChhHHHHHHHHHHHHh
Q 039184 27 DNFTSHLYSALSQKGIETFIDND--LK---RGDEISQSL----VDAIEASSISIIIFSESYASSSWCLDELLRILECKT 96 (158)
Q Consensus 27 ~~fv~~L~~~L~~~gi~v~~d~~--i~---~G~~~~~~i----~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~~~~~ 96 (158)
..+...+.+.|++.|+.++...+ .. .+..+..+| .++|++|+++|+++.+.- .+.-+..|+..|....+
T Consensus 13 ~~~~~~~~~~L~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~d~~~i~~~D~via~l~~~~-~d~Gt~~ElG~A~algk 90 (113)
T PF05014_consen 13 KARVERLREALEKNGFEVYSPQDNDENDEEDSQEWAREIFERDLEGIRECDIVIANLDGFR-PDSGTAFELGYAYALGK 90 (113)
T ss_dssp HHHHHHHHHHHHTTTTEEEGGCTCSSS--TTSHHCHHHHHHHHHHHHHHSSEEEEEECSSS---HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhCCCEEEeccccccccccccchHHHHHHHHHHHHHHHCCEEEEECCCCC-CCCcHHHHHHHHHHCCC
Confidence 57889999999999999998764 21 233344444 478999999999998755 67778999999977543
No 13
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=93.47 E-value=0.9 Score=30.55 Aligned_cols=76 Identities=16% Similarity=0.140 Sum_probs=51.0
Q ss_pred EEEec--ccC-cC-chhHHHHHHHHHhcCCceEEeeCCC--CCCccchHHHH---HHhHhcceEEEEeecCCcCChhHHH
Q 039184 16 VFLSF--KGE-DT-RDNFTSHLYSALSQKGIETFIDNDL--KRGDEISQSLV---DAIEASSISIIIFSESYASSSWCLD 86 (158)
Q Consensus 16 VFISy--s~~-D~-~~~fv~~L~~~L~~~gi~v~~d~~i--~~G~~~~~~i~---~~i~~s~~~I~vlS~~~~~S~wc~~ 86 (158)
||||. ++. |. +..| ......|+..|+.|.-.-.+ ..|.++.+-+. ..|..|+.+++ =|++-+|.-|+.
T Consensus 1 iYIaGPmtG~~~~N~~~f-~~~a~~L~~~G~~vvnPa~~~~~~~~~~~~ym~~~l~~L~~cD~i~~--l~gWe~S~GA~~ 77 (92)
T PF14359_consen 1 IYIAGPMTGLPDYNRPAF-NAAAKRLRAKGYEVVNPAELGIPEGLSWEEYMRICLAMLSDCDAIYM--LPGWENSRGARL 77 (92)
T ss_pred CeEeCCcCCCcchHHHHH-HHHHHHHHHCCCEEeCchhhCCCCCCCHHHHHHHHHHHHHhCCEEEE--cCCcccCcchHH
Confidence 46664 332 21 3344 45778899999887644433 66777666554 45557886544 399999999999
Q ss_pred HHHHHHHH
Q 039184 87 ELLRILEC 94 (158)
Q Consensus 87 El~~a~~~ 94 (158)
|...|...
T Consensus 78 E~~~A~~l 85 (92)
T PF14359_consen 78 EHELAKKL 85 (92)
T ss_pred HHHHHHHC
Confidence 99999654
No 14
>COG4271 Predicted nucleotide-binding protein containing TIR -like domain [Transcription]
Probab=92.28 E-value=0.48 Score=36.54 Aligned_cols=87 Identities=16% Similarity=0.126 Sum_probs=63.4
Q ss_pred cEEEecccCcCchhHHHHHHHHHhcC--CceEEeeCCCCCCccchHHHHHHhHhcceEEEEeecCCc-------------
Q 039184 15 DVFLSFKGEDTRDNFTSHLYSALSQK--GIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYA------------- 79 (158)
Q Consensus 15 DVFISys~~D~~~~fv~~L~~~L~~~--gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~------------- 79 (158)
-|||-|+++ ..+.....+|.+. =..+|+|.-+..|..+.+.+++-|.+++..|++.+|+=.
T Consensus 84 kvFvv~ghd----~iArael~allrd~~l~~vi~d~~~~~g~~ile~lek~i~~v~FAi~latPDDkgy~~~~~~~k~~p 159 (233)
T COG4271 84 KVFVVSGHD----AIARAELEALLRDWKLEPVILDGLFSEGQTILESLEKYIAEVKFAIVLATPDDKGYRAVHSREKAFP 159 (233)
T ss_pred eEEEEeccH----HHHHHHHHHHhhccccceEEecCcccccHHHHHHHHHHhhhceEEEEEecCcccccccccchhhccc
Confidence 899999764 3676666666643 356777777999999999999999999999999999843
Q ss_pred -CChhHHHHHHHHHHHHhhcCCceeeEEE
Q 039184 80 -SSSWCLDELLRILECKTNYGQIVIPVFY 107 (158)
Q Consensus 80 -~S~wc~~El~~a~~~~~~~~~~iiPI~~ 107 (158)
.......||..++.+. +..+|+-+..
T Consensus 160 raRqNVifELGm~mgrL--gRkrv~Il~k 186 (233)
T COG4271 160 RARQNVIFELGMFMGRL--GRKRVMILMK 186 (233)
T ss_pred cccccchhhHhhHHhhc--ccceEEEEec
Confidence 1223566888887653 2345555443
No 15
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=87.55 E-value=3.5 Score=26.42 Aligned_cols=60 Identities=13% Similarity=0.229 Sum_probs=38.7
Q ss_pred ccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeecC
Q 039184 14 YDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSES 77 (158)
Q Consensus 14 ~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~ 77 (158)
+||+|.....+. ...+..+...|++.|++|-+|.. +.++...+..+-..---+++++.++
T Consensus 2 ~~v~ii~~~~~~-~~~a~~~~~~Lr~~g~~v~~d~~---~~~~~~~~~~a~~~g~~~~iiig~~ 61 (91)
T cd00860 2 VQVVVIPVTDEH-LDYAKEVAKKLSDAGIRVEVDLR---NEKLGKKIREAQLQKIPYILVVGDK 61 (91)
T ss_pred eEEEEEeeCchH-HHHHHHHHHHHHHCCCEEEEECC---CCCHHHHHHHHHHcCCCEEEEECcc
Confidence 677777655443 46788999999999999998775 2344445555544333344455444
No 16
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=82.48 E-value=5.6 Score=25.89 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhH-hcceEEEEeec
Q 039184 27 DNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIE-ASSISIIIFSE 76 (158)
Q Consensus 27 ~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~-~s~~~I~vlS~ 76 (158)
..++.+|...|++.|+++.+|.. +..+...+..+-. +.. +++++.+
T Consensus 15 ~~~a~~l~~~L~~~gi~v~~d~~---~~~~~k~~~~a~~~g~p-~~iiiG~ 61 (94)
T PF03129_consen 15 IEYAQELANKLRKAGIRVELDDS---DKSLGKQIKYADKLGIP-FIIIIGE 61 (94)
T ss_dssp HHHHHHHHHHHHHTTSEEEEESS---SSTHHHHHHHHHHTTES-EEEEEEH
T ss_pred HHHHHHHHHHHHHCCCEEEEECC---CCchhHHHHHHhhcCCe-EEEEECc
Confidence 46889999999999999999875 3334445555554 444 4455543
No 17
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=82.48 E-value=7.2 Score=25.02 Aligned_cols=60 Identities=18% Similarity=0.278 Sum_probs=39.0
Q ss_pred ccEEEecccC---cCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeecC
Q 039184 14 YDVFLSFKGE---DTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSES 77 (158)
Q Consensus 14 ~DVFISys~~---D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~ 77 (158)
++|+|-.... .. ...+..+...|++.|+.+-+|.. +..+...+..+-..---+++++.++
T Consensus 2 ~~v~ii~~~~~~~~~-~~~a~~~~~~Lr~~g~~v~~~~~---~~~~~k~~~~a~~~g~~~~iiig~~ 64 (94)
T cd00738 2 IDVAIVPLTDPRVEA-REYAQKLLNALLANGIRVLYDDR---ERKIGKKFREADLRGVPFAVVVGED 64 (94)
T ss_pred eEEEEEECCCCcHHH-HHHHHHHHHHHHHCCCEEEecCC---CcCHhHHHHHHHhCCCCEEEEECCC
Confidence 5777665443 22 46788899999999999988764 3455555555544433466677653
No 18
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=79.96 E-value=12 Score=23.20 Aligned_cols=60 Identities=20% Similarity=0.242 Sum_probs=36.6
Q ss_pred HHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHHHHHHhhcCCce
Q 039184 31 SHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRILECKTNYGQIV 102 (158)
Q Consensus 31 ~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~i 102 (158)
..++..|++.|+.|-.... ..+.+...+..+++++|.+.-+. ..++....+..+.++..|
T Consensus 8 ~a~~~~L~~~g~~v~~~~~----------~~~~l~~~~~tll~i~~~~~~~~--~~~~~~l~~~v~~G~~lv 67 (70)
T PF14258_consen 8 YALYQLLEEQGVKVERWRK----------PYEALEADDGTLLVIGPDLRLSE--PEEAEALLEWVEAGNTLV 67 (70)
T ss_pred HHHHHHHHHCCCeeEEecc----------cHHHhCCCCCEEEEEeCCCCCCc--hHHHHHHHHHHHcCCEEE
Confidence 4577788888988843221 12344558889999999966543 345554444444444444
No 19
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=79.84 E-value=11 Score=26.15 Aligned_cols=63 Identities=10% Similarity=0.025 Sum_probs=42.5
Q ss_pred CCcccEEEeccc--CcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeecCC
Q 039184 11 NNKYDVFLSFKG--EDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESY 78 (158)
Q Consensus 11 ~~~~DVFISys~--~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~~ 78 (158)
-..+||||-..+ .+ ....+..|...|++.|++|-+|.. .++...+..+-+.---+++++.++-
T Consensus 24 lap~~v~Ii~~~~~~~-~~~~a~~la~~LR~~gi~v~~d~~----~sl~kqlk~A~k~g~~~~iiiG~~e 88 (121)
T cd00858 24 LAPIKVAVLPLVKRDE-LVEIAKEISEELRELGFSVKYDDS----GSIGRRYARQDEIGTPFCVTVDFDT 88 (121)
T ss_pred cCCcEEEEEecCCcHH-HHHHHHHHHHHHHHCCCEEEEeCC----CCHHHHHHHhHhcCCCEEEEECcCc
Confidence 345888888766 33 245778899999999999998763 4566666666554334566665553
No 20
>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]
Probab=76.27 E-value=3.9 Score=32.94 Aligned_cols=97 Identities=22% Similarity=0.399 Sum_probs=72.5
Q ss_pred CcccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCC---CCCCccchHHHHHHhH--hcceEEEEeecCCcCChhHHH
Q 039184 12 NKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDND---LKRGDEISQSLVDAIE--ASSISIIIFSESYASSSWCLD 86 (158)
Q Consensus 12 ~~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~---i~~G~~~~~~i~~~i~--~s~~~I~vlS~~~~~S~wc~~ 86 (158)
-++.+=+||.++| ..+|+...+-|..+|+-+++|.. =..|.++-+-+ ..|. ..-+.+.++|.+|-...|...
T Consensus 5 ~~~~~a~~f~~~d--~~~~~~~~n~~~~~~v~~~y~~~~~a~~~~~~~~~~~-~e~~q~~~~~~~~f~~~~~~r~~~~~~ 81 (329)
T COG4916 5 VQFEIALSFAGED--REYVDRVANLLREAGVTVFYDIFEEANLWGKNLYDYL-SEIYQDKALFTIMFISEHYSRKMWTNH 81 (329)
T ss_pred hheeeeeeecCch--HHHHHHHHHHHHhhccEEEEeehhhhhhhhhHHHHHH-HHHHhhhhHHHhhhhhccccCcCCCcH
Confidence 3466778999999 47899999999999999999853 33455554322 2233 455678899999999999999
Q ss_pred HHHHHHHHHh-hcCCceeeEEEeeCC
Q 039184 87 ELLRILECKT-NYGQIVIPVFYRVDP 111 (158)
Q Consensus 87 El~~a~~~~~-~~~~~iiPI~~~v~p 111 (158)
|++..+.+.+ +....++|-+++..|
T Consensus 82 ~~~~~~a~~~~~~~~~~~~~~~~~~~ 107 (329)
T COG4916 82 ERQAMQARAFQEHQEYILPARFDETP 107 (329)
T ss_pred HHHHHHHHHhhhccEEehhhhhccCC
Confidence 9998887654 455678888886554
No 21
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=72.89 E-value=21 Score=23.64 Aligned_cols=58 Identities=14% Similarity=0.201 Sum_probs=36.9
Q ss_pred hHHHHHHHHHhcCCceEEeeCCCCCCc-cchHHHHHHhHhcceEEEEeecCCcCChhHHH
Q 039184 28 NFTSHLYSALSQKGIETFIDNDLKRGD-EISQSLVDAIEASSISIIIFSESYASSSWCLD 86 (158)
Q Consensus 28 ~fv~~L~~~L~~~gi~v~~d~~i~~G~-~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~ 86 (158)
.....+.+.+++.|...-++ --..|. .-...|...|.+++++|++..--.-+..|.-.
T Consensus 10 ~~~~~~~~~~~~~G~~~~~h-g~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk 68 (97)
T PF10087_consen 10 DRERRYKRILEKYGGKLIHH-GRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVK 68 (97)
T ss_pred ccHHHHHHHHHHcCCEEEEE-ecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHH
Confidence 34677888899999887665 111121 22234888999999988887655544444433
No 22
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=66.96 E-value=20 Score=22.99 Aligned_cols=47 Identities=19% Similarity=0.361 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHhcCCceEEeeCC-CCCCccchHHHHHHhHhcceEEEEeecC
Q 039184 27 DNFTSHLYSALSQKGIETFIDND-LKRGDEISQSLVDAIEASSISIIIFSES 77 (158)
Q Consensus 27 ~~fv~~L~~~L~~~gi~v~~d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS~~ 77 (158)
...+..|...|++.|++|-+|.+ -..|. .+..+-..---+++++.++
T Consensus 17 ~~~a~~la~~Lr~~g~~v~~d~~~~~l~k----~i~~a~~~g~~~~iiiG~~ 64 (94)
T cd00861 17 QELAEKLYAELQAAGVDVLLDDRNERPGV----KFADADLIGIPYRIVVGKK 64 (94)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCccc----chhHHHhcCCCEEEEECCc
Confidence 46789999999999999999876 44444 4444444333355555544
No 23
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity. Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.
Probab=66.33 E-value=5.9 Score=28.07 Aligned_cols=45 Identities=11% Similarity=0.167 Sum_probs=31.1
Q ss_pred ccEEEecc--cCcCchhHHHHHHHHHhcCCceEEeeCC-C---CCCccchH
Q 039184 14 YDVFLSFK--GEDTRDNFTSHLYSALSQKGIETFIDND-L---KRGDEISQ 58 (158)
Q Consensus 14 ~DVFISys--~~D~~~~fv~~L~~~L~~~gi~v~~d~~-i---~~G~~~~~ 58 (158)
|+|=|--- ..+.-...+.+|++.|+..|++|++|.+ - .+|..+.+
T Consensus 28 ~qV~Iipi~~~~~~~~~~a~~l~~~L~~~gi~v~~D~r~~~~~~~G~k~~~ 78 (128)
T cd02426 28 YKVAIDCGKGDTAELRDLCQGLKNELREAGLSVWPGYLETQHSSLEQLLDK 78 (128)
T ss_pred eEEEEEeccCChHHHHHHHHHHHHHHHHcCCEEEeccCcccccCHHHHHHh
Confidence 66654432 1222356789999999999999999887 4 46666543
No 24
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=65.14 E-value=31 Score=21.43 Aligned_cols=59 Identities=24% Similarity=0.285 Sum_probs=35.2
Q ss_pred ccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeec
Q 039184 14 YDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSE 76 (158)
Q Consensus 14 ~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~ 76 (158)
.||||...+.+. ..-+-.+...|++.|++|.++.. +.++...+..+-...-..++++.+
T Consensus 2 ~~v~i~~~~~~~-~~~a~~i~~~Lr~~g~~v~~~~~---~~~~~~~~~~a~~~~~~~~i~i~~ 60 (91)
T cd00859 2 VDVYVVPLGEGA-LSEALELAEQLRDAGIKAEIDYG---GRKLKKQFKYADRSGARFAVILGE 60 (91)
T ss_pred CcEEEEEcChHH-HHHHHHHHHHHHHCCCEEEEecC---CCCHHHHHHHHHHcCCCEEEEEcH
Confidence 367777655432 34578899999999999987653 123444444443332234455544
No 25
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=63.98 E-value=10 Score=25.66 Aligned_cols=58 Identities=17% Similarity=0.317 Sum_probs=36.2
Q ss_pred cCcCchhHHHHHHHHHhcCCceEEeeCC-CCC----------CccchHHHHHHhHhcceEEEEeecCCc
Q 039184 22 GEDTRDNFTSHLYSALSQKGIETFIDND-LKR----------GDEISQSLVDAIEASSISIIIFSESYA 79 (158)
Q Consensus 22 ~~D~~~~fv~~L~~~L~~~gi~v~~d~~-i~~----------G~~~~~~i~~~i~~s~~~I~vlS~~~~ 79 (158)
..|.|++=+-.|.+.|.+.|+.|...+= +.. |-...+.+.++++.++++|+.....-.
T Consensus 11 ~~D~R~Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~~f 79 (106)
T PF03720_consen 11 TDDIRESPALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHDEF 79 (106)
T ss_dssp SS--TT-HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--GGG
T ss_pred CcccccCHHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCHHH
Confidence 3567888999999999999999877654 322 222334678899999977666554433
No 26
>cd07363 45_DOPA_Dioxygenase The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine. This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated ca
Probab=63.75 E-value=48 Score=26.11 Aligned_cols=68 Identities=18% Similarity=0.148 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHhcCCceEEeeCC--CCCCccchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHHHHHHh
Q 039184 27 DNFTSHLYSALSQKGIETFIDND--LKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRILECKT 96 (158)
Q Consensus 27 ~~fv~~L~~~L~~~gi~v~~d~~--i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~~~~~ 96 (158)
..++.+|.+.|+++|+.+-.+.. +.-|--+. +.-...+.++=|+.+|-+...+.....+|..+++..+
T Consensus 80 ~eLa~~i~~~l~~~gi~~~~~~~~~lDHG~~vP--L~~~~p~~~iPvV~isi~~~~~~~~~~~lG~aL~~l~ 149 (253)
T cd07363 80 PELAERVAELLKAAGIPARLDPERGLDHGAWVP--LKLMYPDADIPVVQLSLPASLDPAEHYALGRALAPLR 149 (253)
T ss_pred HHHHHHHHHHHHhcCCCccccCCcCCcccHHHH--HHHHcCCCCCcEEEEEecCCCCHHHHHHHHHHHHhhh
Confidence 57999999999999998876543 55554333 2223345678888999888878888889999998754
No 27
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=62.30 E-value=41 Score=21.95 Aligned_cols=64 Identities=16% Similarity=0.185 Sum_probs=41.8
Q ss_pred EEEecccCcCchhHHHHHHHHHhcCCceEEeeCC--------CCCCccchHHHHHHhHhcceEEEEeecCCc
Q 039184 16 VFLSFKGEDTRDNFTSHLYSALSQKGIETFIDND--------LKRGDEISQSLVDAIEASSISIIIFSESYA 79 (158)
Q Consensus 16 VFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~--------i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~ 79 (158)
+|.+..+.-.+-.++.+|...|.++|.++.+-+. +.-+..+.......+..|+.+|+++.++..
T Consensus 3 ~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~~d~viiD~p~~~~~~~~~~l~~ad~viv~~~~~~~ 74 (104)
T cd02042 3 AVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQYDYIIIDTPPSLGLLTRNALAAADLVLIPVQPSPL 74 (104)
T ss_pred EEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCEEEEeCcCCCCHHHHHHHHHCCEEEEeccCCHH
Confidence 3566654444567789999999989988766421 111222344455788888888888877654
No 28
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=62.20 E-value=30 Score=30.44 Aligned_cols=62 Identities=11% Similarity=0.224 Sum_probs=43.1
Q ss_pred CCcccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeec
Q 039184 11 NNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSE 76 (158)
Q Consensus 11 ~~~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~ 76 (158)
....||+|-.-+++. ...+..|...|++.|++|-+|.. +.++...+..|-..---.++++.+
T Consensus 468 ~~p~~v~vi~~~~~~-~~~a~~ia~~LR~~Gi~v~~d~~---~~sl~~q~k~A~~~g~~~~iiiG~ 529 (563)
T TIGR00418 468 LAPVQVVVIPVNERH-LDYAKKVAQKLKKAGIRVDVDDR---NERLGKKIREAQKQKIPYMLVVGD 529 (563)
T ss_pred CCCceEEEEEccchH-HHHHHHHHHHHHHcCCEEEEECC---CCCHHHHHHHHHhcCCCEEEEEch
Confidence 346788887766543 57889999999999999999864 445666666665543335555554
No 29
>COG0400 Predicted esterase [General function prediction only]
Probab=59.16 E-value=35 Score=26.29 Aligned_cols=57 Identities=21% Similarity=0.228 Sum_probs=42.4
Q ss_pred CCCCCcccEEEecccCcC--chhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhH
Q 039184 8 HPRNNKYDVFLSFKGEDT--RDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIE 65 (158)
Q Consensus 8 ~~~~~~~DVFISys~~D~--~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~ 65 (158)
.+.....-|||+|-..|. -...+.+|.+.|+..|..|+... +..|-.+..+-.+.+.
T Consensus 141 ~~~~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~~v~~~~-~~~GH~i~~e~~~~~~ 199 (207)
T COG0400 141 LPDLAGTPILLSHGTEDPVVPLALAEALAEYLTASGADVEVRW-HEGGHEIPPEELEAAR 199 (207)
T ss_pred ccccCCCeEEEeccCcCCccCHHHHHHHHHHHHHcCCCEEEEE-ecCCCcCCHHHHHHHH
Confidence 345667889999988885 35678999999999999998755 4567777655444443
No 30
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=57.58 E-value=52 Score=24.78 Aligned_cols=76 Identities=16% Similarity=0.084 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHhcCCceEEeeCC-------CCCC---ccchHHHHHHhHhcceEEEEeecCC-cCChhHHHHHHHHHHHH
Q 039184 27 DNFTSHLYSALSQKGIETFIDND-------LKRG---DEISQSLVDAIEASSISIIIFSESY-ASSSWCLDELLRILECK 95 (158)
Q Consensus 27 ~~fv~~L~~~L~~~gi~v~~d~~-------i~~G---~~~~~~i~~~i~~s~~~I~vlS~~~-~~S~wc~~El~~a~~~~ 95 (158)
.+..+.|.+.|.+.|+.++.... ..|+ ..+.+.=...|.+|+++|+++.+-= ...+-+..|+.++....
T Consensus 19 i~~~d~lkall~~~gf~~~~P~d~~~~~~~~~p~~~a~~i~e~d~~~i~~aD~vla~ld~fr~~~DsGTa~E~GYa~Alg 98 (172)
T COG3613 19 IELRDELKALLLEAGFEVLSPFDEAEPIAETGPNETAEKIYEADIKLIDQADIVLANLDPFRPDPDSGTAFELGYAIALG 98 (172)
T ss_pred HHHHHHHHHHHHHcCCeeeCcchhccCccccCccHHHHHHHHHHHHHHhhcCEEEEecCCCCCCCCCcchHHHHHHHHcC
Confidence 36778888999999999887622 2221 1233444578899999999998654 12345678999998765
Q ss_pred hhcCCceeeEE
Q 039184 96 TNYGQIVIPVF 106 (158)
Q Consensus 96 ~~~~~~iiPI~ 106 (158)
+ .+++.+
T Consensus 99 K----Pv~~~~ 105 (172)
T COG3613 99 K----PVYAYR 105 (172)
T ss_pred C----ceEEEe
Confidence 5 666665
No 31
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=57.29 E-value=22 Score=31.47 Aligned_cols=64 Identities=17% Similarity=0.349 Sum_probs=42.6
Q ss_pred CcccEEEeccc-C-cCchhHHHHHHHHHhcCCceEEeeCC-CCCCccchHHHHHHhHhcceEEEEeecCCc
Q 039184 12 NKYDVFLSFKG-E-DTRDNFTSHLYSALSQKGIETFIDND-LKRGDEISQSLVDAIEASSISIIIFSESYA 79 (158)
Q Consensus 12 ~~~DVFISys~-~-D~~~~fv~~L~~~L~~~gi~v~~d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~ 79 (158)
..+||+|---. . +.-...+..|+..|++.|++|-+|++ -.+|..+.+. .+.... +++++.++..
T Consensus 467 aP~~v~Iv~~~~~~~~~~~~a~~i~~~L~~~gi~v~~Ddr~~~~g~k~~~a---d~~GiP-~~iiiG~~e~ 533 (565)
T PRK09194 467 APFDVHIVPVNMKDEEVKELAEKLYAELQAAGIEVLLDDRKERPGVKFADA---DLIGIP-HRIVVGDRGL 533 (565)
T ss_pred CCceEEEEECCCCcHHHHHHHHHHHHHHhccCCeEEEECCCCCHHHHHHHH---HhcCCC-EEEEEcCccc
Confidence 45899887653 2 22346889999999999999999998 6667655532 223344 4555555533
No 32
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=55.49 E-value=19 Score=24.66 Aligned_cols=29 Identities=14% Similarity=0.158 Sum_probs=22.4
Q ss_pred EEEecccCcCchhHHHHHHHHHhcCCceEEe
Q 039184 16 VFLSFKGEDTRDNFTSHLYSALSQKGIETFI 46 (158)
Q Consensus 16 VFISys~~D~~~~fv~~L~~~L~~~gi~v~~ 46 (158)
||+|.+..| + .-...+...|...|++++-
T Consensus 3 vlisv~~~d-k-~~~~~~a~~l~~~G~~i~a 31 (116)
T cd01423 3 ILISIGSYS-K-PELLPTAQKLSKLGYKLYA 31 (116)
T ss_pred EEEecCccc-c-hhHHHHHHHHHHCCCEEEE
Confidence 899998887 3 3455777888889999864
No 33
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=53.74 E-value=22 Score=22.50 Aligned_cols=31 Identities=19% Similarity=0.388 Sum_probs=14.1
Q ss_pred cEEEecccCcCchhHHHHHHHHHhcCCceEE
Q 039184 15 DVFLSFKGEDTRDNFTSHLYSALSQKGIETF 45 (158)
Q Consensus 15 DVFISys~~D~~~~fv~~L~~~L~~~gi~v~ 45 (158)
.|+|.+.+.+.....+..+.+.|...|+.++
T Consensus 45 ~vii~~D~D~aG~~a~~~~~~~l~~~g~~~~ 75 (79)
T cd03364 45 EVILAFDGDEAGQKAALRALELLLKLGLNVR 75 (79)
T ss_pred eEEEEECCCHHHHHHHHHHHHHHHHCCCeEE
Confidence 3444444333333444455555555554444
No 34
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=53.00 E-value=35 Score=29.23 Aligned_cols=63 Identities=21% Similarity=0.247 Sum_probs=40.7
Q ss_pred cccEEEeccc--CcCchhHHHHHHHHHhcCCceEEeeCC-CCCCccchHHHHHHhHhcceEEEEeecCCc
Q 039184 13 KYDVFLSFKG--EDTRDNFTSHLYSALSQKGIETFIDND-LKRGDEISQSLVDAIEASSISIIIFSESYA 79 (158)
Q Consensus 13 ~~DVFISys~--~D~~~~fv~~L~~~L~~~gi~v~~d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~ 79 (158)
.+||+|---. .+.....+..|...|++.|++|.+|.+ -.+|..+.+.- ..+.. +++|+.++-+
T Consensus 345 P~qV~Iipi~~~~~~~~~~a~~i~~~L~~~Gi~v~~D~~~~~lg~ki~~a~---~~giP-~~iiVG~~e~ 410 (439)
T PRK12325 345 PFKVGIINLKQGDEACDAACEKLYAALSAAGIDVLYDDTDERPGAKFATMD---LIGLP-WQIIVGPKGL 410 (439)
T ss_pred CeEEEEEecCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHhHHHHHHH---HcCCC-EEEEECCccc
Confidence 4789876542 222356889999999999999999987 55565444321 22333 5556655543
No 35
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=51.57 E-value=57 Score=27.81 Aligned_cols=61 Identities=15% Similarity=0.244 Sum_probs=41.0
Q ss_pred CcccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeec
Q 039184 12 NKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSE 76 (158)
Q Consensus 12 ~~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~ 76 (158)
...||+|.+-+.+. ...+-.+...|+++|++|-+|.. +..+...+..+-+.--..++++.+
T Consensus 324 ~~~~v~v~~~~~~~-~~~a~~ia~~LR~~Gi~veid~~---~~~l~k~~k~A~~~~~~~viiiG~ 384 (430)
T CHL00201 324 QSIDVYIATQGLKA-QKKGWEIIQFLEKQNIKFELDLS---SSNFHKQIKQAGKKRAKACIILGD 384 (430)
T ss_pred CCCCEEEEEcCHHH-HHHHHHHHHHHHhCCCeEEEeeC---CCCHHHHHHHHHHcCCCEEEEEec
Confidence 34789998855442 45678899999999999987642 345566666665543345555654
No 36
>cd07373 2A5CPDO_A The alpha subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO) catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the alpha subunit, which does not contain a potential metal binding site and may not possess catalytic activity.
Probab=50.79 E-value=1.3e+02 Score=24.01 Aligned_cols=76 Identities=14% Similarity=0.199 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHhcCCceEE-eeCC---CCCCccchHHHHHHh--HhcceEEEEeecCCcCChhHHHHHHHHHHH-HhhcC
Q 039184 27 DNFTSHLYSALSQKGIETF-IDND---LKRGDEISQSLVDAI--EASSISIIIFSESYASSSWCLDELLRILEC-KTNYG 99 (158)
Q Consensus 27 ~~fv~~L~~~L~~~gi~v~-~d~~---i~~G~~~~~~i~~~i--~~s~~~I~vlS~~~~~S~wc~~El~~a~~~-~~~~~ 99 (158)
..++.+|.+.|.+.|+.+- .|.. +.-|--.. + .-+ ...++=|+.+|.+...+.....+|..++++ .++.+
T Consensus 90 ~eLA~~i~~~~~~~gi~~~~~~~~~~~lDHG~~vP--L-~~l~~~~~~iPvV~~s~~~~~~~~~~~~lG~al~~~l~~~~ 166 (271)
T cd07373 90 TALAEACVTACPEHGVHARGVDYDGFPIDTGTITA--C-TLMGIGTEALPLVVASNNLYHSGEITEKLGAIAADAAKDQN 166 (271)
T ss_pred HHHHHHHHHHHHHCCCcEEEecCCCCCCcchhHHH--H-HHHcccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 5799999999999999986 6653 33343222 1 122 145666777888887777788899999985 44445
Q ss_pred CceeeE
Q 039184 100 QIVIPV 105 (158)
Q Consensus 100 ~~iiPI 105 (158)
.+|+-|
T Consensus 167 ~rV~iI 172 (271)
T cd07373 167 KRVAVV 172 (271)
T ss_pred CeEEEE
Confidence 566644
No 37
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=50.73 E-value=24 Score=26.87 Aligned_cols=48 Identities=17% Similarity=0.147 Sum_probs=35.0
Q ss_pred CcccEEEecccCc-----CchhHHHHHHHHHhcCCceEEeeCC-C-CCCccchHH
Q 039184 12 NKYDVFLSFKGED-----TRDNFTSHLYSALSQKGIETFIDND-L-KRGDEISQS 59 (158)
Q Consensus 12 ~~~DVFISys~~D-----~~~~fv~~L~~~L~~~gi~v~~d~~-i-~~G~~~~~~ 59 (158)
-.++|+|---..+ .-...+..|...|+..|++|-+|.+ - .+|..+.+.
T Consensus 9 AP~qVvIipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~r~~~s~g~K~~~a 63 (202)
T cd00862 9 APIQVVIVPIGIKDEKREEVLEAADELAERLKAAGIRVHVDDRDNYTPGWKFNDW 63 (202)
T ss_pred cCceEEEEEecCCccchHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHhHHHHHH
Confidence 4578887754322 0245789999999999999999987 4 888877643
No 38
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=50.73 E-value=85 Score=22.00 Aligned_cols=66 Identities=21% Similarity=0.230 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHhcCCceEEe-eCC-C-CC-----------CccchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHHH
Q 039184 27 DNFTSHLYSALSQKGIETFI-DND-L-KR-----------GDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRIL 92 (158)
Q Consensus 27 ~~fv~~L~~~L~~~gi~v~~-d~~-i-~~-----------G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~ 92 (158)
..+++.+.+.|++.|+.+-+ |-. . .| -.+-.+++.+.+.+|+ .|++.||.|..+. --.+..++
T Consensus 17 ~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD-~iI~~sP~y~~~~--s~~lK~~l 93 (152)
T PF03358_consen 17 RKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEAD-GIIFASPVYNGSV--SGQLKNFL 93 (152)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSS-EEEEEEEEBTTBE---HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCC-eEEEeecEEcCcC--ChhhhHHH
Confidence 56889999999888876533 322 2 11 1223357778899999 6778899998763 23555666
Q ss_pred HHH
Q 039184 93 ECK 95 (158)
Q Consensus 93 ~~~ 95 (158)
++.
T Consensus 94 D~~ 96 (152)
T PF03358_consen 94 DRL 96 (152)
T ss_dssp HTH
T ss_pred HHh
Confidence 553
No 39
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional
Probab=49.53 E-value=74 Score=27.12 Aligned_cols=59 Identities=22% Similarity=0.219 Sum_probs=39.8
Q ss_pred CCcccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhH-hcceEEEE
Q 039184 11 NNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIE-ASSISIII 73 (158)
Q Consensus 11 ~~~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~-~s~~~I~v 73 (158)
-..+||+|-.-+++. ...+..|...|++.|++|.+|.. +.++...+..+-+ +++.+|+|
T Consensus 272 LAP~qV~IIpl~eel-~e~AlkLA~eLR~aGIrVeiDl~---srSLgKQiK~AdK~GaPfvIII 331 (387)
T PRK14938 272 LNPIQVRILPVKKDF-LDFSIQVAERLRKEGIRVNVDDL---DDSLGNKIRRAGTEWIPFVIII 331 (387)
T ss_pred cCcceEEEEEeChHH-HHHHHHHHHHHHHCCCEEEEECC---CCCHHHHHHHHHHcCCCEEEEE
Confidence 345788777665553 46788999999999999999864 3455556666554 44444443
No 40
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=48.72 E-value=36 Score=29.55 Aligned_cols=61 Identities=13% Similarity=0.125 Sum_probs=39.5
Q ss_pred cccEEEeccc-----CcCchhHHHHHHHHHhcCCceEEeeC-C-CCCCccchHHHHHHhHhcceEEEEeecC
Q 039184 13 KYDVFLSFKG-----EDTRDNFTSHLYSALSQKGIETFIDN-D-LKRGDEISQSLVDAIEASSISIIIFSES 77 (158)
Q Consensus 13 ~~DVFISys~-----~D~~~~fv~~L~~~L~~~gi~v~~d~-~-i~~G~~~~~~i~~~i~~s~~~I~vlS~~ 77 (158)
.+||+|---. .+.-...+..|...|++.|++|-+|. . -.+|..+.+.- ..+.. +++++.++
T Consensus 287 P~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~GirV~lD~r~~~s~gkK~~~ae---~~GvP-~~IiIG~~ 354 (477)
T PRK08661 287 PIQVVIVPIFKKEEKKEEVLEYAKELAEELKKAGIRVKLDDRSDKTPGWKFNEWE---LKGVP-LRIEIGPR 354 (477)
T ss_pred CCeEEEEEecCCCcCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHH---HCCCC-EEEEECcc
Confidence 5889876541 12124678999999999999999998 5 66776554322 23344 44445444
No 41
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=48.66 E-value=29 Score=31.30 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=33.0
Q ss_pred cccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCC-CCCCccch
Q 039184 13 KYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDND-LKRGDEIS 57 (158)
Q Consensus 13 ~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~-i~~G~~~~ 57 (158)
.++|+|---+++ ....+..+.+.|++.|++|.+|.+ -.+|..+.
T Consensus 499 P~qV~IIpi~e~-~~~~A~eIa~~Lr~~GirV~lDdr~~slgkKir 543 (613)
T PRK03991 499 PTQVRVIPVSER-HLDYAEEVADKLEAAGIRVDVDDRDESLGKKIR 543 (613)
T ss_pred CceEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHH
Confidence 478877765544 357899999999999999999986 55554443
No 42
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=47.33 E-value=74 Score=28.27 Aligned_cols=59 Identities=15% Similarity=0.328 Sum_probs=39.6
Q ss_pred cccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhH-hcceEEEEeec
Q 039184 13 KYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIE-ASSISIIIFSE 76 (158)
Q Consensus 13 ~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~-~s~~~I~vlS~ 76 (158)
..||+|-.-+++. ...+..+...|+++|++|-+|.+ +..+...+..|-. +.+ .++|+.+
T Consensus 438 P~qV~Iipi~e~~-~~~A~~Ia~~LR~~GirVelD~~---~~~lgkkir~A~k~gip-~viIIG~ 497 (545)
T PRK14799 438 SVQVRVLPITDEV-NEYAEKVLNDMRKRRIRAEIDYA---GETLSKRIKNAYDQGVP-YILIVGK 497 (545)
T ss_pred CceEEEEEcCHHH-HHHHHHHHHHHHhCCCEEEEECC---CCCHHHHHHHHHHcCCC-EEEEECh
Confidence 4688887755443 46889999999999999999875 3445555555543 344 4445543
No 43
>PLN03194 putative disease resistance protein; Provisional
Probab=47.00 E-value=92 Score=23.79 Aligned_cols=63 Identities=14% Similarity=0.250 Sum_probs=47.0
Q ss_pred CCceEEeeCC-CCCCccchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHHHHHHhhcCCceeeEE
Q 039184 40 KGIETFIDND-LKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRILECKTNYGQIVIPVF 106 (158)
Q Consensus 40 ~gi~v~~d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPI~ 106 (158)
..+.||+.-+ -.-...+..-|.++++...+-+++-..+...++--..++..+++..+ ..|.||
T Consensus 25 ~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSr----i~IvVf 88 (187)
T PLN03194 25 KPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCK----VGVAVF 88 (187)
T ss_pred CCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCe----EEEEEE
Confidence 4789999776 54555788899999999998877766566666666667888876544 777777
No 44
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=45.85 E-value=89 Score=20.87 Aligned_cols=69 Identities=25% Similarity=0.270 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCCceEEe-eCCCCCCccchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHHHHHHhhcCCceeeEEE
Q 039184 30 TSHLYSALSQKGIETFI-DNDLKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRILECKTNYGQIVIPVFY 107 (158)
Q Consensus 30 v~~L~~~L~~~gi~v~~-d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPI~~ 107 (158)
...|...|++.|+.|-+ |-...+ +++.+.+.+.+.-++.+|-.+.. ...++....+..+..... +||..
T Consensus 17 l~~la~~l~~~G~~v~~~d~~~~~-----~~l~~~~~~~~pd~V~iS~~~~~---~~~~~~~l~~~~k~~~p~-~~iv~ 86 (121)
T PF02310_consen 17 LLYLAAYLRKAGHEVDILDANVPP-----EELVEALRAERPDVVGISVSMTP---NLPEAKRLARAIKERNPN-IPIVV 86 (121)
T ss_dssp HHHHHHHHHHTTBEEEEEESSB-H-----HHHHHHHHHTTCSEEEEEESSST---HHHHHHHHHHHHHTTCTT-SEEEE
T ss_pred HHHHHHHHHHCCCeEEEECCCCCH-----HHHHHHHhcCCCcEEEEEccCcC---cHHHHHHHHHHHHhcCCC-CEEEE
Confidence 46788999999999854 443322 67778888777777777765443 334444444433333333 44444
No 45
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=44.94 E-value=84 Score=27.74 Aligned_cols=60 Identities=10% Similarity=0.264 Sum_probs=39.5
Q ss_pred cccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeec
Q 039184 13 KYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSE 76 (158)
Q Consensus 13 ~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~ 76 (158)
.+||+|---+++. ...+..|...|++.|++|-+|.+ +..+...+..|-..---.++|+.+
T Consensus 476 p~~v~Ii~~~~~~-~~~a~~i~~~Lr~~gi~v~~d~~---~~~l~kk~~~A~~~g~p~~iivG~ 535 (575)
T PRK12305 476 PVQVVIIPVADAH-NEYAEEVAKKLRAAGIRVEVDTS---NERLNKKIRNAQKQKIPYMLVVGD 535 (575)
T ss_pred CccEEEEEeChHH-HHHHHHHHHHHHHCCCEEEEECC---CCCHHHHHHHHHhcCCCEEEEEec
Confidence 4689887655442 46789999999999999999875 334444555554432224455544
No 46
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=44.84 E-value=76 Score=28.35 Aligned_cols=60 Identities=12% Similarity=0.197 Sum_probs=40.7
Q ss_pred cccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeec
Q 039184 13 KYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSE 76 (158)
Q Consensus 13 ~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~ 76 (158)
..||+|-.-++.. ...+..|...|+++|++|-+|.+ +..+...+..|-..---.++++.+
T Consensus 539 p~~v~Ii~~~~~~-~~~a~~i~~~Lr~~gi~v~~d~~---~~~l~kki~~A~~~g~~~~iiiG~ 598 (638)
T PRK00413 539 PVQVVVLPITDKH-ADYAKEVAKKLKAAGIRVEVDLR---NEKIGYKIREAQLQKVPYMLVVGD 598 (638)
T ss_pred cceEEEEEeChhH-HHHHHHHHHHHHhCCCEEEEECC---CCCHhHHHHHhhccCCCEEEEEcc
Confidence 4688887755443 46789999999999999999875 344455555554433335556654
No 47
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=44.48 E-value=1.1e+02 Score=21.38 Aligned_cols=86 Identities=14% Similarity=0.303 Sum_probs=43.7
Q ss_pred CCCcccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhc---ceEEEEeecCCcCChhHHH
Q 039184 10 RNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEAS---SISIIIFSESYASSSWCLD 86 (158)
Q Consensus 10 ~~~~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s---~~~I~vlS~~~~~S~wc~~ 86 (158)
....+|++|.|+....+ .....+ ....++.++. +.|.++.+.+.++++.. .-.|+++..+.-. -+..
T Consensus 7 ~~~~~~~~l~~~~~~~~-~~~~~~---~~~~~~~~~~----Q~g~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~--l~~~ 76 (122)
T PF09837_consen 7 QADGADVVLAYTPDGDH-AAFRQL---WLPSGFSFFP----QQGGDLGERMANAFQQAARGYEPVVLIGSDCPD--LTPD 76 (122)
T ss_dssp -TSSSEEEEEE----TT-HHHHHH---HH-TTSEEEE------SSSHHHHHHHHHHHHHTT-SEEEEE-SS-TT----HH
T ss_pred cCCCcCEEEEEcCCccH-HHHhcc---ccCCCCEEee----cCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCC--CCHH
Confidence 34568999999987743 333332 3445677664 56777777777777665 2255555555432 2455
Q ss_pred HHHHHHHHHhhcCCceeeE
Q 039184 87 ELLRILECKTNYGQIVIPV 105 (158)
Q Consensus 87 El~~a~~~~~~~~~~iiPI 105 (158)
.+..|.+..+....++-|-
T Consensus 77 ~l~~A~~~L~~~d~VlgPa 95 (122)
T PF09837_consen 77 DLEQAFEALQRHDVVLGPA 95 (122)
T ss_dssp HHHHHHHHTTT-SEEEEEB
T ss_pred HHHHHHHHhccCCEEEeec
Confidence 6667766655455555553
No 48
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=44.33 E-value=35 Score=22.95 Aligned_cols=60 Identities=22% Similarity=0.343 Sum_probs=35.7
Q ss_pred EEEecccCcCchhHHHHHHHHHhcCCceEEeeC--------C-CC-----CCccchHHHHHHhHhcceEEEEeecC
Q 039184 16 VFLSFKGEDTRDNFTSHLYSALSQKGIETFIDN--------D-LK-----RGDEISQSLVDAIEASSISIIIFSES 77 (158)
Q Consensus 16 VFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~--------~-i~-----~G~~~~~~i~~~i~~s~~~I~vlS~~ 77 (158)
||+|.+..| + .-...+...|.+.|++++--. . +. ....-..+|.+.|++-++-++|-.|+
T Consensus 3 vl~s~~~~~-k-~~~~~~~~~l~~~G~~l~aT~gT~~~l~~~gi~~~~v~~~~~~~~~i~~~i~~~~id~vIn~~~ 76 (110)
T cd01424 3 VFISVADRD-K-PEAVEIAKRLAELGFKLVATEGTAKYLQEAGIPVEVVNKVSEGRPNIVDLIKNGEIQLVINTPS 76 (110)
T ss_pred EEEEEEcCc-H-hHHHHHHHHHHHCCCEEEEchHHHHHHHHcCCeEEEEeecCCCchhHHHHHHcCCeEEEEECCC
Confidence 899998777 3 344477788888888886421 0 10 00001245667777666666666554
No 49
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=43.23 E-value=76 Score=25.62 Aligned_cols=69 Identities=26% Similarity=0.241 Sum_probs=44.5
Q ss_pred HHHHHHhcCCceEEeeCC-CCCCccchHHHHHHhHhcceEEEEeec-----------------CCcCChhHHHHHHHHHH
Q 039184 32 HLYSALSQKGIETFIDND-LKRGDEISQSLVDAIEASSISIIIFSE-----------------SYASSSWCLDELLRILE 93 (158)
Q Consensus 32 ~L~~~L~~~gi~v~~d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS~-----------------~~~~S~wc~~El~~a~~ 93 (158)
.+.-.|..+|++|- .- +.|+.++++++.+ +..-+++=+.++| +|.+-+-|..|+..|-+
T Consensus 158 PlS~YLA~~G~KvA--N~PLvpe~~lP~~L~~-~~~~kivGLtIdp~rL~~IR~~Rl~~lg~s~Ya~~~~i~~El~~A~~ 234 (269)
T PRK05339 158 PTSLYLANKGIKAA--NYPLVPEVPLPEELFP-IDPKKIFGLTIDPERLIEIRKERLPNLGLSRYASLEQCREELAEAER 234 (269)
T ss_pred HHHHHHHccCCceE--eeCCCCCCCCCHHHHh-CCCCcEEEEeCCHHHHHHHHHHHhcccCcCcCCCHHHHHHHHHHHHH
Confidence 45566667898873 33 6777777666543 4444555555543 47777899999999987
Q ss_pred HHhhcCCcee
Q 039184 94 CKTNYGQIVI 103 (158)
Q Consensus 94 ~~~~~~~~ii 103 (158)
-.+..+.++|
T Consensus 235 l~~k~~~pvI 244 (269)
T PRK05339 235 LFRREGIPVI 244 (269)
T ss_pred HHHHcCCCEE
Confidence 7654444433
No 50
>PLN02530 histidine-tRNA ligase
Probab=43.04 E-value=91 Score=27.10 Aligned_cols=61 Identities=13% Similarity=0.120 Sum_probs=41.6
Q ss_pred CcccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeec
Q 039184 12 NKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSE 76 (158)
Q Consensus 12 ~~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~ 76 (158)
...||+|.+-.++. ...+-.+...|+++|++|-+|.. +.++...+..+-+.--..|+++.+
T Consensus 400 ~~~dVlVi~~~~~~-~~~A~~ia~~LR~~Gi~vevd~~---~~~l~k~ik~A~k~g~~~iviiG~ 460 (487)
T PLN02530 400 HQVDDVVFALDEDL-QGAAAGVASRLREKGRSVDLVLE---PKKLKWVFKHAERIGAKRLVLVGA 460 (487)
T ss_pred CCCcEEEEEcChHH-HHHHHHHHHHHHHCCCeEEEecC---CCCHHHHHHHHHHCCCCEEEEEch
Confidence 45789998855553 46788899999999999977643 244555666666544445556654
No 51
>PF03618 Kinase-PPPase: Kinase/pyrophosphorylase; InterPro: IPR005177 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.; GO: 0005524 ATP binding, 0016772 transferase activity, transferring phosphorus-containing groups
Probab=42.64 E-value=92 Score=24.94 Aligned_cols=69 Identities=23% Similarity=0.209 Sum_probs=46.4
Q ss_pred HHHHHHhcCCceEEeeCC-CCCCccchHHHHHHhHhcceEEEEee-------------------cCCcCChhHHHHHHHH
Q 039184 32 HLYSALSQKGIETFIDND-LKRGDEISQSLVDAIEASSISIIIFS-------------------ESYASSSWCLDELLRI 91 (158)
Q Consensus 32 ~L~~~L~~~gi~v~~d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS-------------------~~~~~S~wc~~El~~a 91 (158)
.|.-.|..+|++| ..- +.|+-.++++|.+ +...+++=+.++ .+|..-+-|..||..|
T Consensus 152 PlS~YLA~~G~Kv--AN~PLvpe~~lP~~L~~-~~~~ki~GLtidp~~L~~IR~~Rl~~lg~~~s~Ya~~~~i~~El~~A 228 (255)
T PF03618_consen 152 PLSMYLANKGYKV--ANVPLVPEVPLPEELFE-VDPKKIFGLTIDPERLIEIRRERLKSLGLDDSSYADLERIEEELEYA 228 (255)
T ss_pred chhHHHHhcCcce--eecCcCCCCCCCHHHHh-CCCCcEEEEECCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHH
Confidence 3455666688887 344 7788777777764 345555555554 3577778999999999
Q ss_pred HHHHhhcCCcee
Q 039184 92 LECKTNYGQIVI 103 (158)
Q Consensus 92 ~~~~~~~~~~ii 103 (158)
-+-.+..+..+|
T Consensus 229 ~~l~~~~~~pvI 240 (255)
T PF03618_consen 229 ERLFRKLGCPVI 240 (255)
T ss_pred HHHHHHcCCCEE
Confidence 887665555544
No 52
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=40.99 E-value=51 Score=26.35 Aligned_cols=104 Identities=17% Similarity=0.258 Sum_probs=64.2
Q ss_pred HHHHhcCCceEEeeCC-----CCCCccchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHHHHHHhhcCCceeeEEE-
Q 039184 34 YSALSQKGIETFIDND-----LKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRILECKTNYGQIVIPVFY- 107 (158)
Q Consensus 34 ~~~L~~~gi~v~~d~~-----i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPI~~- 107 (158)
++.|... +++|.|-. -..+.++.+....+++.+..=-+++|-.-...+=-..++..+.+. - . +|||.
T Consensus 134 R~~l~a~-v~ilaDV~~kh~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~~----~-~-~PVlvG 206 (254)
T PF03437_consen 134 RKRLGAD-VKILADVHVKHSSPLATRDLEEAAKDAVERGGADAVIVTGKATGEPPDPEKLKRVREA----V-P-VPVLVG 206 (254)
T ss_pred HHHcCCC-eEEEeeechhhcccCCCCCHHHHHHHHHHhcCCCEEEECCcccCCCCCHHHHHHHHhc----C-C-CCEEEe
Confidence 3444445 99998854 223456666777777776665667777666555555666655322 1 2 99999
Q ss_pred -eeCCcccccccCc-----hHHHHHHHHh---cc-hhHHHHHHHHHH
Q 039184 108 -RVDPSHVRKQSGN-----FEDSFSKLEE---QF-PDRMQTWRIALT 144 (158)
Q Consensus 108 -~v~p~~v~~~~~~-----~~~~f~~~~~---~~-~~~~~~W~~al~ 144 (158)
+++++++.++... -|-.|.+... .+ .+++.+++++..
T Consensus 207 SGvt~~Ni~~~l~~ADG~IVGS~~K~~G~~~n~VD~~Rv~~fm~~v~ 253 (254)
T PF03437_consen 207 SGVTPENIAEYLSYADGAIVGSYFKKDGKWENPVDPERVRRFMEAVK 253 (254)
T ss_pred cCCCHHHHHHHHHhCCEEEEeeeeeeCCEeCCcCCHHHHHHHHHHhh
Confidence 5899998765431 1344444444 22 788888877654
No 53
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=40.49 E-value=1.1e+02 Score=22.98 Aligned_cols=82 Identities=12% Similarity=0.172 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHhcCCceEE-eeCC-CCCC--------ccchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHHHHHH-
Q 039184 27 DNFTSHLYSALSQKGIETF-IDND-LKRG--------DEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRILECK- 95 (158)
Q Consensus 27 ~~fv~~L~~~L~~~gi~v~-~d~~-i~~G--------~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~~~~- 95 (158)
...+..+.+.|++.|..+- +|-. +.++ .+-...+.+.|.+++ .|++.||.|..|--- -|..+++..
T Consensus 17 ~~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD-~iIi~tP~Y~~s~pg--~LKn~iD~l~ 93 (191)
T PRK10569 17 SALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQAD-GLIVATPVYKASFSG--ALKTLLDLLP 93 (191)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCC-EEEEECCccCCCCCH--HHHHHHHhCC
Confidence 3566778788888887763 3444 4432 123346778888999 677889999876333 222333221
Q ss_pred --hhcCCceeeEEEeeCC
Q 039184 96 --TNYGQIVIPVFYRVDP 111 (158)
Q Consensus 96 --~~~~~~iiPI~~~v~p 111 (158)
.-.+..++||-....+
T Consensus 94 ~~~l~~K~v~iiat~G~~ 111 (191)
T PRK10569 94 ERALEHKVVLPLATGGSV 111 (191)
T ss_pred hhhhCCCEEEEEEecCCc
Confidence 1124466666554333
No 54
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=40.10 E-value=64 Score=27.22 Aligned_cols=51 Identities=16% Similarity=0.305 Sum_probs=38.7
Q ss_pred cCcCchhHHHHHHHHHhcCCceEEeeCC-CCC----CccchHHHHHHhHhcceEEE
Q 039184 22 GEDTRDNFTSHLYSALSQKGIETFIDND-LKR----GDEISQSLVDAIEASSISII 72 (158)
Q Consensus 22 ~~D~~~~fv~~L~~~L~~~gi~v~~d~~-i~~----G~~~~~~i~~~i~~s~~~I~ 72 (158)
..|.|++=+-.|.+.|..+|..|-..+- +.. |-.+.++..++++.|+.+|+
T Consensus 310 t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (388)
T PRK15057 310 SDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDSFFNSRLERDLATFKQQADVIIS 365 (388)
T ss_pred CCccccChHHHHHHHHHhCCCEEEEECCCCCchhhcCCeeeCCHHHHHHhCCEEEE
Confidence 3467888899999999999988876654 332 34567788889999997654
No 55
>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]
Probab=38.76 E-value=77 Score=22.61 Aligned_cols=55 Identities=16% Similarity=0.208 Sum_probs=37.3
Q ss_pred ccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcce
Q 039184 14 YDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSI 69 (158)
Q Consensus 14 ~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~ 69 (158)
.++|+-..+.-.-..+.+.|..+++.+|+-++.|-+ .+|+.+...|.+.+.+|..
T Consensus 30 ~~~i~~~g~~i~~~~~ie~i~~~~~~k~VIILTD~D-~~Ge~Irk~l~~~l~~~~~ 84 (127)
T COG1658 30 AGVIITNGSAINSLETIELIKKAQKYKGVIILTDPD-RKGERIRKKLKEYLPGAKG 84 (127)
T ss_pred CceEEEcCCccchHHHHHHHHHhhccCCEEEEeCCC-cchHHHHHHHHHHhccccc
Confidence 455665544321145778888888888888888765 6688888888877777443
No 56
>PF13289 SIR2_2: SIR2-like domain
Probab=38.68 E-value=98 Score=21.20 Aligned_cols=9 Identities=44% Similarity=0.560 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 039184 29 FTSHLYSAL 37 (158)
Q Consensus 29 fv~~L~~~L 37 (158)
+-..|...|
T Consensus 76 ~~~~l~~~l 84 (143)
T PF13289_consen 76 FPNFLRSLL 84 (143)
T ss_pred HHHHHHHHH
Confidence 334444444
No 57
>PRK09271 flavodoxin; Provisional
Probab=38.51 E-value=1.5e+02 Score=21.35 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=21.1
Q ss_pred EEEecccCcCchhHHHHHHHHHhcCCceEEe
Q 039184 16 VFLSFKGEDTRDNFTSHLYSALSQKGIETFI 46 (158)
Q Consensus 16 VFISys~~D~~~~fv~~L~~~L~~~gi~v~~ 46 (158)
||-|-.+.- +.++..|.+.|+..|+.+-+
T Consensus 6 vY~S~tGnT--e~~A~~ia~~l~~~g~~v~~ 34 (160)
T PRK09271 6 AYASLSGNT--REVAREIEERCEEAGHEVDW 34 (160)
T ss_pred EEEcCCchH--HHHHHHHHHHHHhCCCeeEE
Confidence 345544443 57999999999999987643
No 58
>cd08584 PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=38.46 E-value=81 Score=24.15 Aligned_cols=61 Identities=13% Similarity=0.059 Sum_probs=38.4
Q ss_pred cEEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeecCCcCCh
Q 039184 15 DVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYASSS 82 (158)
Q Consensus 15 DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~ 82 (158)
-+|++.|..+.. .++-.|+. +-=-||+|.- -+..+..++.+.+.++.+-|+++||.-..-+
T Consensus 103 ~i~tr~Se~E~~-~~~~~~~~----~~~~VW~D~f--~~~~~~~~~~~~~~~~~~~~c~VSpELh~~~ 163 (192)
T cd08584 103 RTATRVSEYEPI-PTALSLYE----KADWVWIDSF--TSLWLDNDLILKLLKAGKKICLVSPELHGRD 163 (192)
T ss_pred eeEEeecccccc-hHHHHhhc----cccEEEEecc--cccCCCHHHHHHHHHCCcEEEEECHHHcCCC
Confidence 366666655432 22222222 2223899873 2356667788888888999999999977544
No 59
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=38.06 E-value=50 Score=26.46 Aligned_cols=43 Identities=23% Similarity=0.311 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCceEEeeCCCCCCc---cchHHHHHHhHhcceEEEEee
Q 039184 29 FTSHLYSALSQKGIETFIDNDLKRGD---EISQSLVDAIEASSISIIIFS 75 (158)
Q Consensus 29 fv~~L~~~L~~~gi~v~~d~~i~~G~---~~~~~i~~~i~~s~~~I~vlS 75 (158)
=+.+|.+.|...|+.+.... ..|| .+.+.+..+.++++++ |+|
T Consensus 22 Na~~la~~L~~~G~~v~~~~--~VgD~~~~I~~~l~~a~~r~D~v--I~t 67 (255)
T COG1058 22 NAAFLADELTELGVDLARIT--TVGDNPDRIVEALREASERADVV--ITT 67 (255)
T ss_pred hHHHHHHHHHhcCceEEEEE--ecCCCHHHHHHHHHHHHhCCCEE--EEC
Confidence 36789999999999997543 3455 4445666666676644 444
No 60
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=37.60 E-value=1.2e+02 Score=27.29 Aligned_cols=62 Identities=11% Similarity=0.168 Sum_probs=41.4
Q ss_pred CcccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeec
Q 039184 12 NKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSE 76 (158)
Q Consensus 12 ~~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~ 76 (158)
...||+|-.-+++.....+..|...|++.|++|-+|.. +.++...+..|-..---.++++.+
T Consensus 540 ap~qV~Ii~~~~~~~~~~a~~la~~LR~~Gi~veid~~---~~sl~kq~k~A~k~g~~~~iiiG~ 601 (639)
T PRK12444 540 APVQVKVIPVSNAVHVQYADEVADKLAQAGIRVERDER---DEKLGYKIREAQMQKIPYVLVIGD 601 (639)
T ss_pred CCceEEEEEcccHHHHHHHHHHHHHHHHCCCEEEEECC---CCCHHHHHHHHHHcCCCEEEEEcc
Confidence 46788877755411247789999999999999999874 345555666655433335555554
No 61
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=37.42 E-value=1.8e+02 Score=22.95 Aligned_cols=75 Identities=17% Similarity=0.294 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHhcCCceEEeeCC-CCCCccchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHHHHHHhhcC--Ccee
Q 039184 27 DNFTSHLYSALSQKGIETFIDND-LKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRILECKTNYG--QIVI 103 (158)
Q Consensus 27 ~~fv~~L~~~L~~~gi~v~~d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~--~~ii 103 (158)
+.....|....+.+| ..++|-+ ..+++.+ .++...-.+-+ +|+|-+-+.+.+...|+...+.++...+ ..-|
T Consensus 78 ~~~i~ll~~la~~~~-~d~iDiEl~~~~~~~-~~~~~~~~~~~---vI~SyH~F~~TP~~~~i~~~l~km~~~~aDivKi 152 (231)
T COG0710 78 EEYIELLKKLAELNG-PDYIDIELSSPEDDV-KEIIKFAKKHG---VIVSYHDFEKTPPLEEIIERLDKMESLGADIVKI 152 (231)
T ss_pred HHHHHHHHHHHhhcC-CCEEEEEccCcchhH-HHHHhccccCC---EEEEeccCCCCCcHHHHHHHHHHHHhhCCCeEEE
Confidence 456777777666666 5678887 4544443 23333333333 8999999999999999999998865433 3444
Q ss_pred eEE
Q 039184 104 PVF 106 (158)
Q Consensus 104 PI~ 106 (158)
.+.
T Consensus 153 Avm 155 (231)
T COG0710 153 AVM 155 (231)
T ss_pred Eec
Confidence 443
No 62
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=37.34 E-value=86 Score=26.69 Aligned_cols=46 Identities=24% Similarity=0.279 Sum_probs=35.2
Q ss_pred HHHHHHhHhcc-eEEEEeecCCc-CChhHHHHHHHHHHHHhhcCCcee
Q 039184 58 QSLVDAIEASS-ISIIIFSESYA-SSSWCLDELLRILECKTNYGQIVI 103 (158)
Q Consensus 58 ~~i~~~i~~s~-~~I~vlS~~~~-~S~wc~~El~~a~~~~~~~~~~ii 103 (158)
+.+++++...+ .+.++.+|+=- ..-|..+||..+.+.....+.+||
T Consensus 148 ~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VI 195 (388)
T COG1168 148 DALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVI 195 (388)
T ss_pred HHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEE
Confidence 57888999887 67777777754 667999999999887665565554
No 63
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=37.15 E-value=1.2e+02 Score=21.26 Aligned_cols=46 Identities=7% Similarity=0.040 Sum_probs=30.3
Q ss_pred HHHHHHhHhcceEEEEeecCCcCChhHHHHHHHHHHHHhhcCCceeeEE
Q 039184 58 QSLVDAIEASSISIIIFSESYASSSWCLDELLRILECKTNYGQIVIPVF 106 (158)
Q Consensus 58 ~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPI~ 106 (158)
+.+.+.+..++++|+|++.+- .+...+.....+.......+.|-|+
T Consensus 120 ~~~~~~~~~~d~vi~V~~~~~---~~~~~~~~~l~~~~~~~~~~~i~V~ 165 (168)
T PF00350_consen 120 EITEEYLPKADVVIFVVDANQ---DLTESDMEFLKQMLDPDKSRTIFVL 165 (168)
T ss_dssp HHHHHHHSTTEEEEEEEETTS---TGGGHHHHHHHHHHTTTCSSEEEEE
T ss_pred HHHHHhhccCCEEEEEeccCc---ccchHHHHHHHHHhcCCCCeEEEEE
Confidence 456788899999999997766 4454555555555444455555554
No 64
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=36.78 E-value=70 Score=24.16 Aligned_cols=50 Identities=16% Similarity=0.266 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeecCCc
Q 039184 27 DNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYA 79 (158)
Q Consensus 27 ~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~ 79 (158)
+.....|..+.+.+|+-+|.|.+ .+|+.+...|.+.+-++... .++..+.
T Consensus 35 ~~~i~~i~~~~~~rgVIIfTDpD-~~GekIRk~i~~~vp~~kha--fi~~~~a 84 (174)
T TIGR00334 35 DETINLIKKAQKKQGVIILTDPD-FPGEKIRKKIEQHLPGYENC--FIPKHLA 84 (174)
T ss_pred HHHHHHHHHHhhcCCEEEEeCCC-CchHHHHHHHHHHCCCCeEE--eeeHHhc
Confidence 46678888888999999999986 78999999999999888765 4554443
No 65
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=35.85 E-value=47 Score=28.15 Aligned_cols=59 Identities=19% Similarity=0.409 Sum_probs=25.1
Q ss_pred CCCCccchHHHHHHhHhcceEEEEeecCCcC-------ChhHHHHHHHHHHHHhhcCCce--eeEEEeeCCcc
Q 039184 50 LKRGDEISQSLVDAIEASSISIIIFSESYAS-------SSWCLDELLRILECKTNYGQIV--IPVFYRVDPSH 113 (158)
Q Consensus 50 i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~-------S~wc~~El~~a~~~~~~~~~~i--iPI~~~v~p~~ 113 (158)
+.-|-...-+-.+.+..++++|+|+|.||++ ++|.+-|+... .+-+.| +|+.|-+.+.+
T Consensus 13 FHnGH~y~i~~~k~~~~ad~ii~vMSGnFvQRGEPAi~dKw~RA~~AL~-----~GaDLViELP~~~a~qsA~ 80 (388)
T PF05636_consen 13 FHNGHLYQIEQAKKITGADVIIAVMSGNFVQRGEPAIIDKWTRAEMALK-----NGADLVIELPVVYALQSAE 80 (388)
T ss_dssp --HHHHHHHHHHH---TSSEEEEEE--TTSBTSSB-SS-HHHHHHHHHH-----HT-SEEEE---G-------
T ss_pred ccHHHHHHHHHHhccCCCCEEEEEECCCcccCCCeeeCCHHHHHHHHHH-----cCCCEEEECCCcccccccc
Confidence 3334433333334556899999999999986 67888776543 122222 57776665555
No 66
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=35.21 E-value=86 Score=26.40 Aligned_cols=57 Identities=19% Similarity=0.345 Sum_probs=39.1
Q ss_pred Eecc--cCcCchhHHHHHHHHHhcCCceEEeeCC-CCCCcc----chHHHHHHhHhcceEEEEe
Q 039184 18 LSFK--GEDTRDNFTSHLYSALSQKGIETFIDND-LKRGDE----ISQSLVDAIEASSISIIIF 74 (158)
Q Consensus 18 ISys--~~D~~~~fv~~L~~~L~~~gi~v~~d~~-i~~G~~----~~~~i~~~i~~s~~~I~vl 74 (158)
++|. ..|.|++=+-.|.+.|.++|..|...+- ...... ..+.+.+++++++.+|+.-
T Consensus 321 lafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~ad~~v~~t 384 (411)
T TIGR03026 321 LAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLPLIDDLEEALKGADALVILT 384 (411)
T ss_pred eEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhhcccCCCHHHHHhCCCEEEEec
Confidence 3553 3466888889999999999999887665 332211 1246678888999776654
No 67
>PRK02551 flavoprotein NrdI; Provisional
Probab=34.95 E-value=1.8e+02 Score=21.32 Aligned_cols=100 Identities=18% Similarity=0.279 Sum_probs=49.8
Q ss_pred EEEecccCcCchhHHHHHHHHHhcC--CceEEeeCCCCCCccchHHHHHHhHhcceEEEEeecCC-cCC--------hhH
Q 039184 16 VFLSFKGEDTRDNFTSHLYSALSQK--GIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESY-ASS--------SWC 84 (158)
Q Consensus 16 VFISys~~D~~~~fv~~L~~~L~~~--gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~~-~~S--------~wc 84 (158)
+|+|-++.- +.||..|...+.++ ++.+.. +.+.+.+.++-....... -.+++.|.| ... +|.
T Consensus 7 ~Y~S~TGNt--~rFv~kL~~~~~~~~~~~~~~~---i~~~~~i~~~~~~~~~~~--p~vli~pTY~~gG~~~~~~~~~~v 79 (154)
T PRK02551 7 VYISLSGNT--RSFVKRLSDYLATQHKDIEVNP---INIKDLIHETTDFFPETE--PFVAFLPTYLEGGNGIDNGDVEIL 79 (154)
T ss_pred EEEeCChhH--HHHHHHHhcHHhhcccccccee---cccccccCccccccccCC--CEEEEEeeecCCCCCcccCccccc
Confidence 577766654 58999998766542 343321 222222211000011222 334666667 322 566
Q ss_pred HHHHHHHHHHHhhcCCceeeEEEeeCCcccccccCchHHHHHHHHhc
Q 039184 85 LDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGNFEDSFSKLEEQ 131 (158)
Q Consensus 85 ~~El~~a~~~~~~~~~~iiPI~~~v~p~~v~~~~~~~~~~f~~~~~~ 131 (158)
...+..++....+ ...+.-|+ ..-.+.||+.|....+.
T Consensus 80 p~~v~dFL~~~~N-~~~~~gVi--------gsGNrNfg~~F~~aa~~ 117 (154)
T PRK02551 80 TTPLGDFIAYHDN-AKRCLGII--------GSGNRNFNNQYCLTAKQ 117 (154)
T ss_pred hHHHHHHHcchhh-hhheEEEE--------eecccHHHHHHHHHHHH
Confidence 7777777643222 23455554 12244578777765543
No 68
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=34.45 E-value=1.2e+02 Score=24.33 Aligned_cols=59 Identities=24% Similarity=0.354 Sum_probs=34.1
Q ss_pred EEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCC---ccchHHHHHHhH--hcceEEEEee
Q 039184 16 VFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRG---DEISQSLVDAIE--ASSISIIIFS 75 (158)
Q Consensus 16 VFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G---~~~~~~i~~~i~--~s~~~I~vlS 75 (158)
|.+-|...+--...+..+.+.|++.|+.+-....+.+| .++...+. .|. +.+++|+..+
T Consensus 138 v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~-~i~~~~~dvvi~~~~ 201 (350)
T cd06366 138 VATIYEDDDYGSGGLPDLVDALQEAGIEISYRAAFPPSANDDDITDALK-KLKEKDSRVIVVHFS 201 (350)
T ss_pred EEEEEEcCcccchhHHHHHHHHHHcCCEEEEEeccCCCCChhHHHHHHH-HHhcCCCeEEEEECC
Confidence 44445433322456788888888889888655556666 34554444 444 3454444443
No 69
>COG1852 Uncharacterized conserved protein [Function unknown]
Probab=33.62 E-value=1.5e+02 Score=22.96 Aligned_cols=54 Identities=15% Similarity=0.284 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHHHHHHh
Q 039184 29 FTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRILECKT 96 (158)
Q Consensus 29 fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~~~~~ 96 (158)
.+.++.+.-++.|++|| +.||.++...|.+. +..+.++-|- |..||..+++...
T Consensus 121 vi~ei~e~ae~~gykvf----IvpGgs~vkkIlKe-~k~e~vlgVA---------C~~eL~~~m~~ls 174 (209)
T COG1852 121 VIGEIKEIAEKYGYKVF----IVPGGSFVKKILKE-EKPEAVLGVA---------CYRELNEGMEALS 174 (209)
T ss_pred ehHHHHHHHHHhCcEEE----EecChHHHHHHHhh-cCCceEEEEe---------ehHHHHHHHHHhc
Confidence 46678888889999988 58898888888877 7777776665 9999999987643
No 70
>PF09152 DUF1937: Domain of unknown function (DUF1937); InterPro: IPR015235 This entry is represented by Bacteriophage N15, Gp57. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a set of hypothetical bacterial and phage proteins whose exact function has not, as yet, been described. ; PDB: 1T1J_A.
Probab=33.52 E-value=86 Score=22.05 Aligned_cols=64 Identities=14% Similarity=0.074 Sum_probs=38.1
Q ss_pred HHHHHHhcCCceEEeeC--------C-CCCCc-----cchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHHHHHH
Q 039184 32 HLYSALSQKGIETFIDN--------D-LKRGD-----EISQSLVDAIEASSISIIIFSESYASSSWCLDELLRILECK 95 (158)
Q Consensus 32 ~L~~~L~~~gi~v~~d~--------~-i~~G~-----~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~~~~ 95 (158)
+-...|-+.|+.+|-.- . +...+ -|.+--..-++.|+.+|++-.|.+..|.-...|+..|....
T Consensus 31 r~aa~l~~~G~~~fSpv~~sH~~~~~~~~~~~~~~~~~W~~~d~~~L~~c~~lvV~~i~GW~~S~Gi~~Ei~~a~~~~ 108 (116)
T PF09152_consen 31 RVAAELLKAGHAAFSPVVMSHPINFELLGDDDPLIQKLWEDWDRPFLDACDELVVLDIPGWDDSEGIWAEIEAAEEMG 108 (116)
T ss_dssp HHHHHHHHTT-EEEEHHHHHHHHHCCGTTS-HHHHHHHHHHHHHHHHHH-SEEEE---TTGGG-HHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCeeEeccccccccchhcccccCcchhHHHHHHhHHHHHhcceeEEecCCCccccccHHHHHHHHHHcC
Confidence 33344556899888651 1 21122 33333334567899999999999999999999999997654
No 71
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=32.58 E-value=1.2e+02 Score=19.23 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=27.2
Q ss_pred CcccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCC
Q 039184 12 NKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDND 49 (158)
Q Consensus 12 ~~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~ 49 (158)
.+-=|+|+|--.+. -..-.++.+.|.++|+.|+.-+.
T Consensus 15 ~k~~v~i~HG~~eh-~~ry~~~a~~L~~~G~~V~~~D~ 51 (79)
T PF12146_consen 15 PKAVVVIVHGFGEH-SGRYAHLAEFLAEQGYAVFAYDH 51 (79)
T ss_pred CCEEEEEeCCcHHH-HHHHHHHHHHHHhCCCEEEEECC
Confidence 35668999965553 34567888999999999987543
No 72
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=32.43 E-value=2.3e+02 Score=22.68 Aligned_cols=60 Identities=13% Similarity=0.168 Sum_probs=34.9
Q ss_pred cEEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCc-cchHHHHHHhHhcceEEEEee
Q 039184 15 DVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGD-EISQSLVDAIEASSISIIIFS 75 (158)
Q Consensus 15 DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~-~~~~~i~~~i~~s~~~I~vlS 75 (158)
.|.+-|...+--...+..+...+++.|+.|-....+.+++ ++.. +...|..++.=++++.
T Consensus 146 ~v~~l~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~-~i~~l~~~~~d~v~~~ 206 (347)
T cd06340 146 TVALVHEDTEFGTSVAEAIKKFAKERGFEIVEDISYPANARDLTS-EVLKLKAANPDAILPA 206 (347)
T ss_pred eEEEEecCchHhHHHHHHHHHHHHHcCCEEEEeeccCCCCcchHH-HHHHHHhcCCCEEEEc
Confidence 4556564333234677888888888999886544466654 4444 4445555444344443
No 73
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=31.58 E-value=1.3e+02 Score=26.07 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=22.0
Q ss_pred eeeEEE-eeCCcccccccCchHHHHHHHHhc
Q 039184 102 VIPVFY-RVDPSHVRKQSGNFEDSFSKLEEQ 131 (158)
Q Consensus 102 iiPI~~-~v~p~~v~~~~~~~~~~f~~~~~~ 131 (158)
+|-|-. +..|+.|+.-.+.|..+|..+...
T Consensus 365 LItv~~~~G~p~~I~pGkPvy~aAF~~L~~D 395 (431)
T PF10443_consen 365 LITVTTDNGRPSTIRPGKPVYRAAFKRLVND 395 (431)
T ss_pred cEEEEecCCcCCeeECCChhHHHHHHHHhhC
Confidence 344433 567888888888999999987653
No 74
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=31.56 E-value=1.7e+02 Score=21.26 Aligned_cols=54 Identities=15% Similarity=0.325 Sum_probs=33.9
Q ss_pred hHHHHHHHHHhcCCceE-EeeCC-CCC-----C---ccchHHHHHHhHhcceEEEEeecCCcCCh
Q 039184 28 NFTSHLYSALSQKGIET-FIDND-LKR-----G---DEISQSLVDAIEASSISIIIFSESYASSS 82 (158)
Q Consensus 28 ~fv~~L~~~L~~~gi~v-~~d~~-i~~-----G---~~~~~~i~~~i~~s~~~I~vlS~~~~~S~ 82 (158)
..+..+.+.|+..|..+ .+|-. +.. + .+-...+.+.|.+|+ .|++.||.|..|-
T Consensus 17 ~l~~~~~~~l~~~~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD-~iI~~sP~Y~~si 80 (171)
T TIGR03567 17 ALLRHVREALQEQGVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQAD-GVVVATPVYKASY 80 (171)
T ss_pred HHHHHHHHHHHHCCCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCC-EEEEECCcccCCC
Confidence 56777778888777543 23322 221 1 122356778888888 5678899998764
No 75
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=31.07 E-value=40 Score=30.04 Aligned_cols=63 Identities=19% Similarity=0.383 Sum_probs=40.8
Q ss_pred cccEEEecc-cCc-CchhHHHHHHHHHhcCCceEEeeCC-CCCCccchHHHHHHhHhcceEEEEeecCCc
Q 039184 13 KYDVFLSFK-GED-TRDNFTSHLYSALSQKGIETFIDND-LKRGDEISQSLVDAIEASSISIIIFSESYA 79 (158)
Q Consensus 13 ~~DVFISys-~~D-~~~~fv~~L~~~L~~~gi~v~~d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~ 79 (158)
.|+|-|--- .+| .....+.+|++.|+..|++|.+|++ -.+|..+.+.= +-.-. +.+++.++.+
T Consensus 473 P~qV~Iip~~~~~~~~~~~a~~l~~~L~~~gi~v~~DDr~~~~G~K~~dad---liGiP-~~i~vG~~~l 538 (568)
T TIGR00409 473 PYDVVIVVMNMKDEEQQQLAEELYSELLAQGVDVLLDDRNERAGVKFADSE---LIGIP-LRVVVGKKNL 538 (568)
T ss_pred CeEEEEEEcCCChHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHhhh---hcCCC-EEEEECCCcc
Confidence 377765432 222 2356889999999999999999998 77887775432 22333 3445555543
No 76
>PF09886 DUF2113: Uncharacterized protein conserved in archaea (DUF2113); InterPro: IPR016762 There is currently no experimental data for members of this group or their homologues. Based on distant sequence similarity, they may be tentatively predicted to be nucleic acid-binding proteins, they are also likely to be linked to methanogenesis or a process closely connected to it.
Probab=31.00 E-value=2.4e+02 Score=21.60 Aligned_cols=54 Identities=17% Similarity=0.313 Sum_probs=39.7
Q ss_pred cCchhHHHHHHHHHhc---CCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHHHHH
Q 039184 24 DTRDNFTSHLYSALSQ---KGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRILEC 94 (158)
Q Consensus 24 D~~~~fv~~L~~~L~~---~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~~~ 94 (158)
|.++.|...|..++.+ .|++|-.+. -.-+.+++|-|++-..-+|. .|....++.
T Consensus 128 Dp~~~l~~~v~da~~RI~PEGFRVr~~~----------------~~~~~f~~vASE~~i~~ewi-~~a~e~~~e 184 (188)
T PF09886_consen 128 DPSEDLKKKVYDAMFRIAPEGFRVRRHY----------------YEGNSFAFVASEETIKDEWI-EEAKEMIEE 184 (188)
T ss_pred CcHHHHHHHHHHHHHHhCCCccEEeecc----------------ccCCeEEEEECCCCCCHHHH-HHHHHHHHH
Confidence 4567899999999987 488885432 23345889999999999998 555555443
No 77
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=30.89 E-value=44 Score=21.17 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=13.6
Q ss_pred CCceEEeeCCCCCCccchHHHHHHhH
Q 039184 40 KGIETFIDNDLKRGDEISQSLVDAIE 65 (158)
Q Consensus 40 ~gi~v~~d~~i~~G~~~~~~i~~~i~ 65 (158)
..+-+|+|.+ .+|+.....+.+.+.
T Consensus 47 ~~Vii~~D~D-~~G~~~a~~i~~~l~ 71 (81)
T PF13662_consen 47 KEVIIAFDND-KAGEKAAQKIAKKLL 71 (81)
T ss_dssp SEEEEEEESS-HHHHHHHHHHHHHHG
T ss_pred ceEEEEeCcC-HHHHHHHHHHHHHHH
Confidence 4556666654 355555555555443
No 78
>PF05985 EutC: Ethanolamine ammonia-lyase light chain (EutC); InterPro: IPR009246 This family consists of several bacterial ethanolamine ammonia-lyase light chain (EutC) sequences. Ethanolamine ammonia-lyase is a bacterial enzyme that catalyses the adenosylcobalamin-dependent conversion of certain vicinal amino alcohols to oxo compounds and ammonia [].; GO: 0008851 ethanolamine ammonia-lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3ABO_B 3ABR_B 3ABS_B 3ANY_B 3AO0_D 3ABQ_B.
Probab=30.83 E-value=62 Score=25.65 Aligned_cols=46 Identities=20% Similarity=0.414 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHhcCCceE---EeeC-C-CCCCccchHHHHHHhHhcceEEEEeecC
Q 039184 27 DNFTSHLYSALSQKGIET---FIDN-D-LKRGDEISQSLVDAIEASSISIIIFSES 77 (158)
Q Consensus 27 ~~fv~~L~~~L~~~gi~v---~~d~-~-i~~G~~~~~~i~~~i~~s~~~I~vlS~~ 77 (158)
..|...|.+.|...|+++ ++-. - ...||.+. +.+ +++++|+++.+.
T Consensus 123 ~~~l~~L~~~L~~~g~~~ap~~~v~~gRVa~gD~Ig----e~L-~a~~vv~LIGER 173 (237)
T PF05985_consen 123 APLLPALLPGLKSAGWSVAPPVLVRQGRVALGDEIG----EAL-GARVVVVLIGER 173 (237)
T ss_dssp HHHHHHHHHHHHTTTS-B---EEEET--TTHHHHHH----HHH-T-SEEEEEEE--
T ss_pred HHHHHHHHHHHHhcCCCcCCeEEEeeceeehhHHHH----HHh-CCCEEEEEEeCC
Confidence 468899999999988764 4433 2 66666555 333 889999988743
No 79
>TIGR02298 HpaD_Fe 3,4-dihydroxyphenylacetate 2,3-dioxygenase. This enzyme catalyzes the ring-opening step in the degradation of 4-hydroxyphenylacetate.
Probab=30.79 E-value=2.8e+02 Score=22.23 Aligned_cols=77 Identities=9% Similarity=0.034 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHhcCCceEEe--e-CC-CCCCccchHHHHHHhHhcceEEEEeecC-CcCChhHHHHHHHHHHHH-hhcCC
Q 039184 27 DNFTSHLYSALSQKGIETFI--D-ND-LKRGDEISQSLVDAIEASSISIIIFSES-YASSSWCLDELLRILECK-TNYGQ 100 (158)
Q Consensus 27 ~~fv~~L~~~L~~~gi~v~~--d-~~-i~~G~~~~~~i~~~i~~s~~~I~vlS~~-~~~S~wc~~El~~a~~~~-~~~~~ 100 (158)
..++..|.+.+++.|+.+-. + .. +.-|--+.-.. .-.+.++=||-+|.+ ...+.....+|..+++.. ++.+.
T Consensus 96 ~eLA~~i~~~~~~~gi~~~~~~~~~~~lDHG~~vPL~~--l~p~~~ipvV~is~~~~~~~~~~~~~lG~al~~~i~~~~~ 173 (282)
T TIGR02298 96 PALGQLIADEAQEHGVKTLAHQVPSLGLEYGTLVPMRY--MNEDGHFKVVSIAAWCTVHDIEESRALGEAIRKAIEQSDG 173 (282)
T ss_pred HHHHHHHHHHHHHCCCceeeccCCCCCCCeehHhHHHH--hCCCCCCcEEEEeecCCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 57999999999999998752 2 23 55555433222 223466778888876 545677778999998875 33455
Q ss_pred ceeeE
Q 039184 101 IVIPV 105 (158)
Q Consensus 101 ~iiPI 105 (158)
+|+-|
T Consensus 174 rV~iI 178 (282)
T TIGR02298 174 RVAVL 178 (282)
T ss_pred CEEEE
Confidence 66544
No 80
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=30.73 E-value=1.2e+02 Score=19.81 Aligned_cols=47 Identities=21% Similarity=0.342 Sum_probs=34.5
Q ss_pred HHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeecCCcCC
Q 039184 33 LYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYASS 81 (158)
Q Consensus 33 L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S 81 (158)
+...++-.|+..+... ...+...+.+.+.+++-++.|++++.+....
T Consensus 9 ~v~gFrLaGv~~~~~~--~~~ee~~~~l~~l~~~~~~gIIii~e~~~~~ 55 (95)
T PF01990_consen 9 TVLGFRLAGVEGVYVN--TDPEEAEEALKELLKDEDVGIIIITEDLAEK 55 (95)
T ss_dssp HHHHHHHTTSEEEEES--HSHHHHHHHHHHHHHHTTEEEEEEEHHHHTT
T ss_pred HHHHHHHcCCCCccCC--CCHHHHHHHHHHHhcCCCccEEEeeHHHHHH
Confidence 4466777899988754 1234556677777778999999999988763
No 81
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=30.68 E-value=1.5e+02 Score=26.09 Aligned_cols=36 Identities=25% Similarity=0.263 Sum_probs=25.9
Q ss_pred hHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhc
Q 039184 28 NFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEAS 67 (158)
Q Consensus 28 ~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s 67 (158)
..+..|.+.|++.|++..+ -.||.... .+.+++.++
T Consensus 14 ~~~~~l~~~L~~~GV~~vF---gvpG~~~~-~l~dal~~~ 49 (564)
T PRK08155 14 TGAELIVRLLERQGIRIVT---GIPGGAIL-PLYDALSQS 49 (564)
T ss_pred cHHHHHHHHHHHcCCCEEE---eCCCcccH-HHHHHHhcc
Confidence 4578888999999987665 57887665 356666555
No 82
>PRK07933 thymidylate kinase; Validated
Probab=30.56 E-value=1.4e+02 Score=22.70 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=23.5
Q ss_pred EEecccCcC--chhHHHHHHHHHhcCCceEEee
Q 039184 17 FLSFKGEDT--RDNFTSHLYSALSQKGIETFID 47 (158)
Q Consensus 17 FISys~~D~--~~~fv~~L~~~L~~~gi~v~~d 47 (158)
||.+-+-|. +.+.+..|.+.|+.+|++|..-
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~ 34 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEARGRSVATL 34 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 666665553 4678899999999999887653
No 83
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=30.55 E-value=1.8e+02 Score=19.80 Aligned_cols=56 Identities=13% Similarity=0.286 Sum_probs=34.4
Q ss_pred EEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeecCCcCC
Q 039184 16 VFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYASS 81 (158)
Q Consensus 16 VFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S 81 (158)
||-|..+.- +.+++.|.+.|...|+.+-+-+ ..+.- ...+..++ .|++.||.|...
T Consensus 4 iy~S~tGnT--~~~A~~i~~~~~~~g~~v~~~~---~~~~~----~~~l~~~d-~iilgspty~~g 59 (140)
T TIGR01753 4 VYASMTGNT--EEMANIIAEGLKEAGAEVDLLE---VADAD----AEDLLSYD-AVLLGCSTWGDE 59 (140)
T ss_pred EEECCCcHH--HHHHHHHHHHHHhcCCeEEEEE---cccCC----HHHHhcCC-EEEEEcCCCCCC
Confidence 355554443 6899999999999888764422 11110 12344555 678888888753
No 84
>PRK05569 flavodoxin; Provisional
Probab=30.49 E-value=1.9e+02 Score=20.02 Aligned_cols=56 Identities=14% Similarity=0.269 Sum_probs=34.3
Q ss_pred EEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeecCCcCC
Q 039184 16 VFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYASS 81 (158)
Q Consensus 16 VFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S 81 (158)
+|-|-.+.- +..++.+.+.|++.|..+-+.. +..-+ ...+.+++ .|++-||.|...
T Consensus 7 iY~S~tGnT--~~iA~~i~~~~~~~g~~v~~~~-~~~~~------~~~~~~~d-~iilgsPty~~~ 62 (141)
T PRK05569 7 IYWSCGGNV--EVLANTIADGAKEAGAEVTIKH-VADAK------VEDVLEAD-AVAFGSPSMDNN 62 (141)
T ss_pred EEECCCCHH--HHHHHHHHHHHHhCCCeEEEEE-CCcCC------HHHHhhCC-EEEEECCCcCCC
Confidence 344543332 5789999999988887664322 21111 12455666 567888888765
No 85
>PRK13660 hypothetical protein; Provisional
Probab=30.32 E-value=2.4e+02 Score=21.31 Aligned_cols=75 Identities=7% Similarity=0.080 Sum_probs=44.6
Q ss_pred hHHHHHHHHHhcC--CceEEeeCC-CCCCccchHHHH---HH-hHhcceEEEEeecCCcCChhHHHHHHHHHHHHhhcCC
Q 039184 28 NFTSHLYSALSQK--GIETFIDND-LKRGDEISQSLV---DA-IEASSISIIIFSESYASSSWCLDELLRILECKTNYGQ 100 (158)
Q Consensus 28 ~fv~~L~~~L~~~--gi~v~~d~~-i~~G~~~~~~i~---~~-i~~s~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~ 100 (158)
-++-+.+-.|+.. ++++-+--= -.-|..|.+.-. .. +.+++ .+.++|+.+-.|++|+..-...+= +...
T Consensus 56 ~wAaEvvl~LK~~yp~lkL~~~~PF~~q~~~W~e~~q~~y~~i~~~aD-~v~~vs~~~y~~p~q~~~rn~fmv---~~sd 131 (182)
T PRK13660 56 LWAAEVVLELKEEYPDLKLAVITPFEEHGENWNEANQEKLANILKQAD-FVKSISKRPYESPAQFRQYNQFML---EHTD 131 (182)
T ss_pred HHHHHHHHHHHhhCCCeEEEEEeCccchhhcCCHHHHHHHHHHHHhCC-EEEEecCCCCCChHHHHHHHHHHH---HccC
Confidence 4566666666655 455443222 334566654322 34 46677 556669999999999988776652 2344
Q ss_pred ceeeEE
Q 039184 101 IVIPVF 106 (158)
Q Consensus 101 ~iiPI~ 106 (158)
.+|-|+
T Consensus 132 ~~i~~Y 137 (182)
T PRK13660 132 GALLVY 137 (182)
T ss_pred eEEEEE
Confidence 666654
No 86
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=30.29 E-value=1.5e+02 Score=22.09 Aligned_cols=47 Identities=34% Similarity=0.461 Sum_probs=34.1
Q ss_pred HHhcCCceEEe-eCC--C-CCC-ccchHHHHHHhHhcce-----EEEEeecCCcCCh
Q 039184 36 ALSQKGIETFI-DND--L-KRG-DEISQSLVDAIEASSI-----SIIIFSESYASSS 82 (158)
Q Consensus 36 ~L~~~gi~v~~-d~~--i-~~G-~~~~~~i~~~i~~s~~-----~I~vlS~~~~~S~ 82 (158)
.|++.||+..+ |.+ + .|. +.+.+++.+.+++++. -|+|+|.+.-.++
T Consensus 35 ~Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~ 91 (168)
T PF09419_consen 35 HLKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSD 91 (168)
T ss_pred hhhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCccc
Confidence 48899999654 554 5 455 4667888888887774 3899999876655
No 87
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=29.80 E-value=2e+02 Score=20.96 Aligned_cols=35 Identities=9% Similarity=0.264 Sum_probs=26.4
Q ss_pred CCCc-cchHHHHHHhHhcceEEEEeecCCcCChhHH
Q 039184 51 KRGD-EISQSLVDAIEASSISIIIFSESYASSSWCL 85 (158)
Q Consensus 51 ~~G~-~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~ 85 (158)
.||. .+..+...++..++.+|+|++.+---.....
T Consensus 77 tPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~ 112 (188)
T PF00009_consen 77 TPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTE 112 (188)
T ss_dssp ESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHH
T ss_pred cccccceeecccceecccccceeeeecccccccccc
Confidence 4774 5667888999999999999998755444433
No 88
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=29.75 E-value=2e+02 Score=22.62 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=44.9
Q ss_pred EEEecccCcCc-hhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeecCCcCChhHHHH
Q 039184 16 VFLSFKGEDTR-DNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDE 87 (158)
Q Consensus 16 VFISys~~D~~-~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~E 87 (158)
+||=+++.|.. +.++...+++|+..|..+-- +.....-.+.|.+-+.+.+++ .|=.-|-+.==|+..|
T Consensus 36 ~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~---L~l~~~~~~~Ie~~l~~~d~I-yVgGGNTF~LL~~lke 104 (224)
T COG3340 36 AFIPTASVDSEDDFYVEKVRNALAKLGLEVSE---LHLSKPPLAAIENKLMKADII-YVGGGNTFNLLQELKE 104 (224)
T ss_pred EEEecCccccchHHHHHHHHHHHHHcCCeeee---eeccCCCHHHHHHhhhhccEE-EECCchHHHHHHHHHH
Confidence 69999887742 34899999999999987632 445555566777778888855 4444444433334443
No 89
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=29.68 E-value=1.9e+02 Score=19.94 Aligned_cols=9 Identities=33% Similarity=0.623 Sum_probs=3.8
Q ss_pred ccEEEeccc
Q 039184 14 YDVFLSFKG 22 (158)
Q Consensus 14 ~DVFISys~ 22 (158)
.||-|-|+.
T Consensus 68 ~DVvIDfT~ 76 (124)
T PF01113_consen 68 ADVVIDFTN 76 (124)
T ss_dssp -SEEEEES-
T ss_pred CCEEEEcCC
Confidence 455555553
No 90
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=29.35 E-value=86 Score=22.29 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHhcCCceEEeeCCCCCC--ccchHHHHHHhHhcceEEEE
Q 039184 27 DNFTSHLYSALSQKGIETFIDNDLKRG--DEISQSLVDAIEASSISIII 73 (158)
Q Consensus 27 ~~fv~~L~~~L~~~gi~v~~d~~i~~G--~~~~~~i~~~i~~s~~~I~v 73 (158)
+.....|...|++.|+.+..-. +.+- +.+.+.+.+++++++++|..
T Consensus 26 d~n~~~l~~~l~~~G~~v~~~~-~v~Dd~~~i~~~l~~~~~~~DliItt 73 (144)
T TIGR00177 26 DSNGPLLAALLEEAGFNVSRLG-IVPDDPEEIREILRKAVDEADVVLTT 73 (144)
T ss_pred eCcHHHHHHHHHHCCCeEEEEe-ecCCCHHHHHHHHHHHHhCCCEEEEC
Confidence 3456678888999999876422 2222 24455666666666765444
No 91
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=29.28 E-value=3.2e+02 Score=22.44 Aligned_cols=53 Identities=11% Similarity=0.192 Sum_probs=31.9
Q ss_pred hHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHh---cceEEEEeecCCcC
Q 039184 28 NFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEA---SSISIIIFSESYAS 80 (158)
Q Consensus 28 ~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~---s~~~I~vlS~~~~~ 80 (158)
.....|.+.|++.|+.+-....+.+++.-...+.+.|+. +|++|+.....+..
T Consensus 147 ~~~~~l~~~l~~~gi~v~~~~~~~~~~~d~~~~L~~lk~~~~~~viv~~~~~~~~~ 202 (382)
T cd06371 147 ETAQKLASALRAHGLPVGLVTSMGPDEKGAREALKKVRSADRVRVVIMCMHSVLIG 202 (382)
T ss_pred HHHHHHHHHHHHCCCcEEEEEEecCCHHHHHHHHHHHhcCCCcEEEEEEeeccccC
Confidence 467888888888898765444465554333355556664 34555555455544
No 92
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.16 E-value=1.2e+02 Score=26.29 Aligned_cols=54 Identities=19% Similarity=0.237 Sum_probs=40.3
Q ss_pred CCCCccchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHHHHHHhhcCCceeeEE
Q 039184 50 LKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRILECKTNYGQIVIPVF 106 (158)
Q Consensus 50 i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPI~ 106 (158)
+..|-++...+.--++.++.+|+++.|+=+. ...|+..++...+.....|=-|+
T Consensus 165 isR~ydF~~v~~WFaeR~D~IiLlfD~hKLD---IsdEf~~vi~aLkG~EdkiRVVL 218 (532)
T KOG1954|consen 165 ISRGYDFTGVLEWFAERVDRIILLFDAHKLD---ISDEFKRVIDALKGHEDKIRVVL 218 (532)
T ss_pred ccccCChHHHHHHHHHhccEEEEEechhhcc---ccHHHHHHHHHhhCCcceeEEEe
Confidence 6677788889999999999999999998765 45688888776654444443343
No 93
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=28.94 E-value=2e+02 Score=20.48 Aligned_cols=24 Identities=33% Similarity=0.307 Sum_probs=10.7
Q ss_pred CccchHHHHHHhHhcceEEEEeec
Q 039184 53 GDEISQSLVDAIEASSISIIIFSE 76 (158)
Q Consensus 53 G~~~~~~i~~~i~~s~~~I~vlS~ 76 (158)
++.+.+.+.+.|.+++..|.+.++
T Consensus 19 ~~~~~~~i~~~I~~A~~~I~i~~~ 42 (176)
T cd00138 19 GRSDLDALLEAISNAKKSIYIASF 42 (176)
T ss_pred cchHHHHHHHHHHhhheEEEEEEe
Confidence 334444444444444444444444
No 94
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=28.91 E-value=2e+02 Score=19.97 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=13.3
Q ss_pred HHHHHhHhcceEEEEeecCCc
Q 039184 59 SLVDAIEASSISIIIFSESYA 79 (158)
Q Consensus 59 ~i~~~i~~s~~~I~vlS~~~~ 79 (158)
++.+++++++++++|+...-.
T Consensus 4 ~~~~~i~~aD~vl~ViD~~~p 24 (141)
T cd01857 4 QLWRVVERSDIVVQIVDARNP 24 (141)
T ss_pred HHHHHHhhCCEEEEEEEccCC
Confidence 455667777777777765433
No 95
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=28.90 E-value=2.4e+02 Score=20.90 Aligned_cols=54 Identities=9% Similarity=0.077 Sum_probs=32.0
Q ss_pred HHHHhHhcceEEEEeecCCcCChhHHHHHHHHHHHHhhc---CCceeeEEEeeCCccccc
Q 039184 60 LVDAIEASSISIIIFSESYASSSWCLDELLRILECKTNY---GQIVIPVFYRVDPSHVRK 116 (158)
Q Consensus 60 i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~---~~~iiPI~~~v~p~~v~~ 116 (158)
...+++.++++|+|++.+ +.....++...++...+. ...-+|+++=....|+..
T Consensus 74 ~~~~~~~ad~iilv~D~~---~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~ 130 (198)
T cd04142 74 RFRGLRNSRAFILVYDIC---SPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR 130 (198)
T ss_pred HHhhhccCCEEEEEEECC---CHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc
Confidence 445688999999999976 344444444443332111 123367776666777643
No 96
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=28.74 E-value=2.4e+02 Score=20.73 Aligned_cols=84 Identities=14% Similarity=0.186 Sum_probs=54.5
Q ss_pred CCCCCcccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeecCCcCChhHHHH
Q 039184 8 HPRNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDE 87 (158)
Q Consensus 8 ~~~~~~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~E 87 (158)
++...+.|...+..-.- =-+..|.+..++.|++|++ .+|..+...+....+ -+.+|.|- |..+
T Consensus 56 C~~k~t~~g~~C~~Cg~---C~Ig~l~~lae~~g~~v~i----~~Ggt~ar~~ik~~~-p~~iigVA---------C~~d 118 (158)
T PF01976_consen 56 CPAKITSDGYNCKRCGK---CDIGDLKKLAEKYGYKVYI----ATGGTLARKIIKEYR-PKAIIGVA---------CERD 118 (158)
T ss_pred CCCccCCCCCcCCCCCC---CchhHHHHHHHHcCCEEEE----EcChHHHHHHHHHhC-CCEEEEEe---------chHH
Confidence 55555667777653221 2367787888899999996 556665544433332 23455554 9999
Q ss_pred HHHHHHHHhhcCCceeeEEEe
Q 039184 88 LLRILECKTNYGQIVIPVFYR 108 (158)
Q Consensus 88 l~~a~~~~~~~~~~iiPI~~~ 108 (158)
|...++.....+..++-|+++
T Consensus 119 L~~g~~~~~~~~ip~~gV~l~ 139 (158)
T PF01976_consen 119 LISGIQDLKPLGIPVQGVLLD 139 (158)
T ss_pred HHHHHHHHhhcCCCeeEEEeC
Confidence 999988766566777777754
No 97
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=28.45 E-value=1.5e+02 Score=24.11 Aligned_cols=52 Identities=12% Similarity=0.070 Sum_probs=29.4
Q ss_pred EEEecccCc-CchhHHHHHHHHHhcCCceEEeeCCCCCC---ccchHHHHHHhHhcc
Q 039184 16 VFLSFKGED-TRDNFTSHLYSALSQKGIETFIDNDLKRG---DEISQSLVDAIEASS 68 (158)
Q Consensus 16 VFISys~~D-~~~~fv~~L~~~L~~~gi~v~~d~~i~~G---~~~~~~i~~~i~~s~ 68 (158)
|.|-|...+ --...+..+.+.|++.|+.+-....+.++ .++...+. .+..+.
T Consensus 140 v~ii~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~d~~~~l~-~i~~~~ 195 (389)
T cd06352 140 AVVVYSDDSENCFFTLEALEAALREFNLTVSHVVFMEDNSGAEDLLEILQ-DIKRRS 195 (389)
T ss_pred EEEEEecCCccHHHHHHHHHHHHHhcCCeEEEEEEecCCccchhHHHHHH-Hhhhcc
Confidence 444443333 12456778888888888887544445555 45554554 444444
No 98
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=27.95 E-value=93 Score=21.08 Aligned_cols=60 Identities=22% Similarity=0.299 Sum_probs=37.3
Q ss_pred EEEecccCcCchhHHHHHHHHHhcCCceEEeeC--------C-C-----CCCcc-chHHHHHHhHh-cceEEEEeecC
Q 039184 16 VFLSFKGEDTRDNFTSHLYSALSQKGIETFIDN--------D-L-----KRGDE-ISQSLVDAIEA-SSISIIIFSES 77 (158)
Q Consensus 16 VFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~--------~-i-----~~G~~-~~~~i~~~i~~-s~~~I~vlS~~ 77 (158)
||||-+..| +.-...+...|...|+.++--. . + ..+.. -.+++.+.|.+ -++-++|..|+
T Consensus 2 i~isv~d~~--K~~~~~~a~~l~~~G~~i~AT~gTa~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~~ 77 (112)
T cd00532 2 VFLSVSDHV--KAMLVDLAPKLSSDGFPLFATGGTSRVLADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRD 77 (112)
T ss_pred EEEEEEccc--HHHHHHHHHHHHHCCCEEEECcHHHHHHHHcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcCC
Confidence 788887776 2344477788888888875321 0 1 11100 12567788888 88887777775
No 99
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=27.32 E-value=1.3e+02 Score=26.20 Aligned_cols=61 Identities=13% Similarity=0.082 Sum_probs=39.2
Q ss_pred CcccEEEecc--cC---cCchhHHHHHHHHHhcCCceEEeeCC-CCCCccchHHHHHHhH-hcceEEEEeecC
Q 039184 12 NKYDVFLSFK--GE---DTRDNFTSHLYSALSQKGIETFIDND-LKRGDEISQSLVDAIE-ASSISIIIFSES 77 (158)
Q Consensus 12 ~~~DVFISys--~~---D~~~~fv~~L~~~L~~~gi~v~~d~~-i~~G~~~~~~i~~~i~-~s~~~I~vlS~~ 77 (158)
..+||+|--- .. +.....+..|...|++.|++|-+|.+ -.+|..+. .+-. +.. +++++.++
T Consensus 281 aP~qV~Iipi~~~~~~~~~~~~~A~~l~~~Lr~~girv~lD~r~~s~gkk~k----~Ae~~GvP-~~IiIG~~ 348 (472)
T TIGR00408 281 APIQVVIIPIIFKKKENEKVMEAAREVRSRLKKAGFRVHIDDRDNRPGRKFY----QWEIKGIP-LRIEVGPN 348 (472)
T ss_pred CcceEEEEEccCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH----HHHHCCCC-EEEEECcc
Confidence 3488988642 21 12356889999999999999999986 55555444 3323 334 45555544
No 100
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=26.90 E-value=1.7e+02 Score=19.10 Aligned_cols=20 Identities=10% Similarity=0.095 Sum_probs=15.1
Q ss_pred HHHHhHhcceEEEEeecCCc
Q 039184 60 LVDAIEASSISIIIFSESYA 79 (158)
Q Consensus 60 i~~~i~~s~~~I~vlS~~~~ 79 (158)
....+..++.+|+|++..-.
T Consensus 67 ~~~~~~~~d~~ilv~D~s~~ 86 (119)
T PF08477_consen 67 HQFFLKKADAVILVYDLSDP 86 (119)
T ss_dssp SHHHHHHSCEEEEEEECCGH
T ss_pred ccchhhcCcEEEEEEcCCCh
Confidence 34458999999999976543
No 101
>PLN02908 threonyl-tRNA synthetase
Probab=26.85 E-value=2.2e+02 Score=26.04 Aligned_cols=60 Identities=15% Similarity=0.207 Sum_probs=40.9
Q ss_pred cccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeec
Q 039184 13 KYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSE 76 (158)
Q Consensus 13 ~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~ 76 (158)
..||+|-.-+.+. ...+..+...|+++|++|-+|.. +..+...+..|-..---.++|+.+
T Consensus 589 p~qv~Vipv~~~~-~~~A~~va~~LR~~Gi~vevd~~---~~~l~kkir~A~~~g~~~viivG~ 648 (686)
T PLN02908 589 PRQAIVVPISEKS-QDYAEEVRAQLHAAGFYVDVDVT---DRKIQKKVREAQLAQYNYILVVGE 648 (686)
T ss_pred CceEEEEEECHHH-HHHHHHHHHHHHHCCCEEEEECC---CCCHHHHHHHHHHcCCCEEEEECc
Confidence 4688877755543 46889999999999999998753 555666666665433335555543
No 102
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=26.78 E-value=3.8e+02 Score=22.40 Aligned_cols=74 Identities=12% Similarity=0.170 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHh--cCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHHHHHHhh--cCCce
Q 039184 27 DNFTSHLYSALS--QKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRILECKTN--YGQIV 102 (158)
Q Consensus 27 ~~fv~~L~~~L~--~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~~~~~~--~~~~i 102 (158)
+..|+.+.+.|+ ..|+.|-+.+ ..+.-.+.+...+.+|+ .|++-||.|....- .++..+++..+. ...++
T Consensus 262 e~mA~~ia~g~~~~~~g~~v~~~~---~~~~~~~~i~~~~~~~d-~ii~GspT~~~~~~--~~~~~~l~~l~~~~~~~K~ 335 (394)
T PRK11921 262 RRMAEAIAEGIKKANKDVTVKLYN---SAKSDKNDIITEVFKSK-AILVGSSTINRGIL--SSTAAILEEIKGLGFKNKK 335 (394)
T ss_pred HHHHHHHHHHHhhcCCCCeEEEEE---CCCCCHHHHHHHHHhCC-EEEEECCCcCcccc--HHHHHHHHHhhccCcCCCE
Confidence 578999999998 6787775422 22323345556667777 45677888876643 344555544322 12344
Q ss_pred eeEE
Q 039184 103 IPVF 106 (158)
Q Consensus 103 iPI~ 106 (158)
.-+|
T Consensus 336 ~a~F 339 (394)
T PRK11921 336 AAAF 339 (394)
T ss_pred EEEE
Confidence 5554
No 103
>PF14528 LAGLIDADG_3: LAGLIDADG-like domain; PDB: 2CW7_A 2CW8_A 2VS8_F 2VS7_G 1B24_A 1DQ3_A 2DCH_X.
Probab=26.63 E-value=1e+02 Score=18.98 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=23.3
Q ss_pred cEEEecccCcCchhHHHHHHHHHhcCCceEEee
Q 039184 15 DVFLSFKGEDTRDNFTSHLYSALSQKGIETFID 47 (158)
Q Consensus 15 DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d 47 (158)
.+.|+++..+ +.+++.+...|.+-|+..-+.
T Consensus 21 ~~~i~~~~~s--~~ll~~v~~lL~~lGi~~~i~ 51 (77)
T PF14528_consen 21 SVRISISSKS--KELLEDVQKLLLRLGIKASIY 51 (77)
T ss_dssp EEEEEEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred EEEEEEEECC--HHHHHHHHHHHHHCCCeeEEE
Confidence 5678887777 689999999999999988664
No 104
>PF13155 Toprim_2: Toprim-like
Probab=26.54 E-value=1.1e+02 Score=19.66 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=24.2
Q ss_pred HHHHHHHHhc---CCceEEeeCCCCCCccchHHHHHHhHhcc
Q 039184 30 TSHLYSALSQ---KGIETFIDNDLKRGDEISQSLVDAIEASS 68 (158)
Q Consensus 30 v~~L~~~L~~---~gi~v~~d~~i~~G~~~~~~i~~~i~~s~ 68 (158)
...+...|++ +.+.+++|.+ .+|......+.+.+....
T Consensus 35 ~~~~~~~l~~~~~~~i~l~~DnD-~aG~~~~~~~~~~l~~~~ 75 (96)
T PF13155_consen 35 EKQQIKFLKENPYKKIVLAFDND-EAGRKAAEKLQKELKEEG 75 (96)
T ss_pred HHHHHHHHHhCCCCcEEEEeCCC-HHHHHHHHHHHHHHHhhC
Confidence 4455566643 3466777765 677777777777776653
No 105
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=26.33 E-value=98 Score=24.98 Aligned_cols=52 Identities=27% Similarity=0.316 Sum_probs=36.8
Q ss_pred cCcCchhHHHHHHHHHhcCCceEEe---e-CC-CCCCccchHHHHHHhHhcceEEEEeec
Q 039184 22 GEDTRDNFTSHLYSALSQKGIETFI---D-ND-LKRGDEISQSLVDAIEASSISIIIFSE 76 (158)
Q Consensus 22 ~~D~~~~fv~~L~~~L~~~gi~v~~---d-~~-i~~G~~~~~~i~~~i~~s~~~I~vlS~ 76 (158)
+-|.|+ -.+.+.|.+.|+.|++ + .. -.+|-.+.....+.+.+++++|.++.+
T Consensus 9 ggd~r~---~~~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~ 65 (296)
T PRK08306 9 GGDARQ---LELIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEEALSDVDVIILPVPG 65 (296)
T ss_pred cCcHHH---HHHHHHHHHCCCEEEEEeccccccccCCceeeccHHHHhccCCEEEECCcc
Confidence 456442 3567888899999875 2 22 356777765667789999999988664
No 106
>PF07454 SpoIIP: Stage II sporulation protein P (SpoIIP); InterPro: IPR010897 This family contains the bacterial stage II sporulation protein P (SpoIIP) (approximately 350 residues long). It has been shown that a block in polar cytokinesis in Bacillus subtilis is mediated partly by transcription of spoIID, spoIIM and spoIIP. This inhibition of polar division is involved in the locking in of asymmetry after the formation of a polar septum during sporulation []. SpoIIP is one of the three genes (spoIID, spoIIM and spoIIP, [, , ]), under the control of sigma E, that have been shown to be essential for the engulfment of the forespore by the mother cell. Their products are involved in degradation of the septal peptidoglycan and mutations in spoIID, spoIIM or spoIIP block sporulation at morphological stage II, prior to the stage of engulfment. These three genes are absolutely conserved (sometimes even duplicated) in all endospore formers [].
Probab=26.30 E-value=83 Score=25.34 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=28.9
Q ss_pred CCCcccEEEecccCcCc-----------------------hhHHHHHHHHHhcCCceEEeeCC
Q 039184 10 RNNKYDVFLSFKGEDTR-----------------------DNFTSHLYSALSQKGIETFIDND 49 (158)
Q Consensus 10 ~~~~~DVFISys~~D~~-----------------------~~fv~~L~~~L~~~gi~v~~d~~ 49 (158)
...+..|+|=|+|.++- -.+...|.+.|+++||.|-.|..
T Consensus 70 ~~~~~~V~IYhTH~~EsY~p~~~~~~~~~~~~~~~~~~nV~~VG~~L~~~Le~~Gi~v~h~~t 132 (268)
T PF07454_consen 70 TSGKPQVLIYHTHSTESYLPSDGLKSVPGPGGATDEEVNVVKVGDRLAQELEKYGIGVIHDKT 132 (268)
T ss_pred CCCCCEEEEEeCCCccccccccccccCCCCCccccccchHHHHHHHHHHHHHHCCCcEEEeCC
Confidence 45678898877666521 11336789999999999988876
No 107
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=26.19 E-value=2.3e+02 Score=21.48 Aligned_cols=51 Identities=22% Similarity=0.429 Sum_probs=35.8
Q ss_pred EEEecccCcCchhHHHHHHHHHhcC-CceEEeeCCCCCCccchHHHHHHhHhcceEEE
Q 039184 16 VFLSFKGEDTRDNFTSHLYSALSQK-GIETFIDNDLKRGDEISQSLVDAIEASSISII 72 (158)
Q Consensus 16 VFISys~~D~~~~fv~~L~~~L~~~-gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~ 72 (158)
+||..++.| .++++....++|++. |+.+-.-..+. .+...+.|.+++.+++
T Consensus 35 ~~IptAs~~-~~~~~~~~~~a~~~l~G~~~~~~~~~~-----~~~~~~~l~~ad~I~l 86 (212)
T cd03146 35 LFVPTASGD-RDEYTARFYAAFESLRGVEVSHLHLFD-----TEDPLDALLEADVIYV 86 (212)
T ss_pred EEECCCCCC-HHHHHHHHHHHHhhccCcEEEEEeccC-----cccHHHHHhcCCEEEE
Confidence 688888776 357888999999999 98765422122 3455677888886643
No 108
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=26.18 E-value=1.3e+02 Score=24.68 Aligned_cols=44 Identities=25% Similarity=0.590 Sum_probs=33.7
Q ss_pred HHHHHHhHhcceEEEEeecCCc---CChhHHHHHHHHHHHHhhcCCceeeEEE
Q 039184 58 QSLVDAIEASSISIIIFSESYA---SSSWCLDELLRILECKTNYGQIVIPVFY 107 (158)
Q Consensus 58 ~~i~~~i~~s~~~I~vlS~~~~---~S~wc~~El~~a~~~~~~~~~~iiPI~~ 107 (158)
+.=..+|.+++.-++|+-|++. .++|..+||.+.- +++ ++||=|
T Consensus 33 d~~~~~i~~~~f~llVVDps~~g~~~~~~~~eelr~~~----~gg--~~pIAY 79 (300)
T COG2342 33 DAYINEILNSPFDLLVVDPSYCGPFNTPWTIEELRTKA----DGG--VKPIAY 79 (300)
T ss_pred cchHHHHhcCCCcEEEEeccccCCCCCcCcHHHHHHHh----cCC--eeEEEE
Confidence 3445789999999999999665 6789999998873 233 777765
No 109
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.94 E-value=2.9e+02 Score=23.86 Aligned_cols=59 Identities=22% Similarity=0.369 Sum_probs=41.2
Q ss_pred CCcccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhH-hcceEEEE
Q 039184 11 NNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIE-ASSISIII 73 (158)
Q Consensus 11 ~~~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~-~s~~~I~v 73 (158)
....||||..-+++. ...+-.+...|+++|+++=++-. +..+...+..|-+ .++.+|++
T Consensus 333 ~~~~~v~v~~~~~~~-~~~a~~la~~LR~~g~~~~~~~~---~r~~k~q~k~A~~~g~~~~vii 392 (429)
T COG0124 333 ETRVDVYVVPLGEDA-EPEALKLAQKLRAAGISVEVDYS---GRKLKKQFKYADKLGARFAVIL 392 (429)
T ss_pred CCCCCEEEEEcCchh-HHHHHHHHHHHHHcCCcEEEEec---cccHHHHHHHHHHCCCCEEEEE
Confidence 456899999988875 46788999999999999877653 2225556665555 44444443
No 110
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=25.87 E-value=65 Score=26.72 Aligned_cols=16 Identities=50% Similarity=0.792 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHHHhhc
Q 039184 133 PDRMQTWRIALTEAAN 148 (158)
Q Consensus 133 ~~~~~~W~~al~~i~~ 148 (158)
+-.++.|+++|+..+.
T Consensus 304 pn~~~~W~~~l~~~~g 319 (322)
T PRK02797 304 PNYLQGWRNALAIAAG 319 (322)
T ss_pred HhHHHHHHHHHHHhhC
Confidence 5669999999988754
No 111
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=25.75 E-value=88 Score=27.26 Aligned_cols=60 Identities=12% Similarity=0.210 Sum_probs=30.0
Q ss_pred EEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHHHHH
Q 039184 16 VFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRILEC 94 (158)
Q Consensus 16 VFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~~~ 94 (158)
+|+-||++|. |..-.+.|.+.- |.+|..+. ..-.+.+||.+|==+- ..|..+|+...+..
T Consensus 128 AFVtf~~Ke~----Aq~Aik~lnn~E--------ir~GK~ig--vc~Svan~RLFiG~IP-----K~k~keeIlee~~k 187 (506)
T KOG0117|consen 128 AFVTFCTKEE----AQEAIKELNNYE--------IRPGKLLG--VCVSVANCRLFIGNIP-----KTKKKEEILEEMKK 187 (506)
T ss_pred EEEEeecHHH----HHHHHHHhhCcc--------ccCCCEeE--EEEeeecceeEeccCC-----ccccHHHHHHHHHh
Confidence 8999999874 222234443321 33444332 1123455665553332 34556666655543
No 112
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=25.63 E-value=51 Score=27.74 Aligned_cols=15 Identities=53% Similarity=0.835 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHHhh
Q 039184 133 PDRMQTWRIALTEAA 147 (158)
Q Consensus 133 ~~~~~~W~~al~~i~ 147 (158)
+-..+.|++||+..+
T Consensus 343 pny~~~w~~~l~~~~ 357 (360)
T PF07429_consen 343 PNYLQGWRQALRLAA 357 (360)
T ss_pred CchHHHHHHHHHHHh
Confidence 677999999998765
No 113
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.36 E-value=1.5e+02 Score=17.26 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=22.8
Q ss_pred CcccEEEecccCcCchhHHHHHHHHHhcCCceEE
Q 039184 12 NKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETF 45 (158)
Q Consensus 12 ~~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~ 45 (158)
..+.+++.....+ ..-...+.+.|++.|++++
T Consensus 41 ~~~~~~i~v~~~~--~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 41 GEVEVELTLETRG--AEHIEEIIAALREAGYDVR 72 (73)
T ss_pred ceEEEEEEEEeCC--HHHHHHHHHHHHHcCCEEe
Confidence 4566777776555 2345788899999999875
No 114
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=25.35 E-value=2.2e+02 Score=19.14 Aligned_cols=31 Identities=16% Similarity=0.279 Sum_probs=21.3
Q ss_pred hHHHHHHhHhc-ceEEEEeecCCcCChhHHHHHH
Q 039184 57 SQSLVDAIEAS-SISIIIFSESYASSSWCLDELL 89 (158)
Q Consensus 57 ~~~i~~~i~~s-~~~I~vlS~~~~~S~wc~~El~ 89 (158)
.+++.+++++- +.+++.+...+. .||.....
T Consensus 3 ~~~~~~a~~~~~k~vlv~f~a~wC--~~C~~~~~ 34 (125)
T cd02951 3 YEDLAEAAADGKKPLLLLFSQPGC--PYCDKLKR 34 (125)
T ss_pred HHHHHHHHHcCCCcEEEEEeCCCC--HHHHHHHH
Confidence 45778888888 777777765554 57766543
No 115
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=25.26 E-value=1.4e+02 Score=25.36 Aligned_cols=58 Identities=21% Similarity=0.295 Sum_probs=38.0
Q ss_pred Eecc--cCcCchhHHHHHHHHHhcCC-ceEEeeCC-CCC------CccchHHHHHHhHhcceEEEEee
Q 039184 18 LSFK--GEDTRDNFTSHLYSALSQKG-IETFIDND-LKR------GDEISQSLVDAIEASSISIIIFS 75 (158)
Q Consensus 18 ISys--~~D~~~~fv~~L~~~L~~~g-i~v~~d~~-i~~------G~~~~~~i~~~i~~s~~~I~vlS 75 (158)
++|. ..|.|++=+-.|.+.|.++| ..|-.++- +.. +.....++.+++++++.+|+.-.
T Consensus 328 lafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~ 395 (415)
T PRK11064 328 LAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVTLVSLDEALATADVLVMLVD 395 (415)
T ss_pred eEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCceeeCCHHHHHhCCCEEEECCC
Confidence 3564 34668888889999999996 87766443 322 11122467788899997665543
No 116
>PRK10628 LigB family dioxygenase; Provisional
Probab=25.23 E-value=3.5e+02 Score=21.48 Aligned_cols=77 Identities=12% Similarity=0.079 Sum_probs=54.1
Q ss_pred EecccCcCchhHHHHHHHHHhcCCceEEeeC-C-CCCCccchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHHHHHH
Q 039184 18 LSFKGEDTRDNFTSHLYSALSQKGIETFIDN-D-LKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRILECK 95 (158)
Q Consensus 18 ISys~~D~~~~fv~~L~~~L~~~gi~v~~d~-~-i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~~~~ 95 (158)
|.|..... ..++..+.+.|++.|+.+ -+. + +.-|.-.. +...--++++=|+-+|=+...+.-...+|..+++..
T Consensus 62 ~~Ypa~G~-p~LA~~i~~ll~~~~~~~-~~~~rGlDHG~Wvp--L~~m~P~adIPVvqlSl~~~~~~~~h~~lG~aL~~L 137 (246)
T PRK10628 62 THYPAPGS-PALAQRLVELLAPVPVTL-DKEAWGFDHGSWGV--LIKMYPDADIPMVQLSIDSTKPAAWHFEMGRKLAAL 137 (246)
T ss_pred ecCCCCCC-HHHHHHHHHHhhhcCccc-CCcccCcccchhhh--hhhhCCCCCCCeEEeecCCCCCHHHHHHHHHHHHhh
Confidence 67754443 579999999999888833 233 5 66665443 334455788888899987777777788999998876
Q ss_pred hhc
Q 039184 96 TNY 98 (158)
Q Consensus 96 ~~~ 98 (158)
++.
T Consensus 138 R~~ 140 (246)
T PRK10628 138 RDE 140 (246)
T ss_pred ccC
Confidence 433
No 117
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=25.13 E-value=90 Score=25.25 Aligned_cols=31 Identities=32% Similarity=0.554 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHH---h-hcCCceeeEEEeeCCc
Q 039184 82 SWCLDELLRILECK---T-NYGQIVIPVFYRVDPS 112 (158)
Q Consensus 82 ~wc~~El~~a~~~~---~-~~~~~iiPI~~~v~p~ 112 (158)
+-|.+||.+..... + ..+..++|||.-++|+
T Consensus 153 DICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPe 187 (280)
T KOG2792|consen 153 DICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPE 187 (280)
T ss_pred CcChHHHHHHHHHHHHHhccCCCCccceEEEeCcc
Confidence 46888987765542 2 3466777999998884
No 118
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=24.60 E-value=1.2e+02 Score=20.34 Aligned_cols=53 Identities=13% Similarity=0.260 Sum_probs=30.5
Q ss_pred EEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeecCCc
Q 039184 16 VFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYA 79 (158)
Q Consensus 16 VFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~ 79 (158)
++||+++.. ...+..+ ..++++|.++-. -.-.++.++ -+.++..+.+-+.+..
T Consensus 58 i~is~sg~~--~~~~~~~-~~ak~~g~~vi~-iT~~~~~~l-------~~~ad~~l~~~~~~~~ 110 (131)
T PF01380_consen 58 IIISYSGET--RELIELL-RFAKERGAPVIL-ITSNSESPL-------ARLADIVLYIPTGEES 110 (131)
T ss_dssp EEEESSSTT--HHHHHHH-HHHHHTTSEEEE-EESSTTSHH-------HHHSSEEEEEESSCGS
T ss_pred Eeeeccccc--hhhhhhh-HHHHhcCCeEEE-EeCCCCCch-------hhhCCEEEEecCCCcc
Confidence 467777765 4555555 488888987633 101122222 2566777777766655
No 119
>KOG4132 consensus Uroporphyrinogen III synthase UROS/HEM4 [Coenzyme transport and metabolism]
Probab=24.55 E-value=1.3e+02 Score=24.02 Aligned_cols=49 Identities=22% Similarity=0.247 Sum_probs=32.6
Q ss_pred HHHHHHHhcCCceE--E--eeCCCCCCccchHHHHHHhHhcc--eEEEEeecCCcCC
Q 039184 31 SHLYSALSQKGIET--F--IDNDLKRGDEISQSLVDAIEASS--ISIIIFSESYASS 81 (158)
Q Consensus 31 ~~L~~~L~~~gi~v--~--~d~~i~~G~~~~~~i~~~i~~s~--~~I~vlS~~~~~S 81 (158)
+-|...|..+||+| + +..+-. .++..++..+++.+. -.|++|||.-++|
T Consensus 146 dil~kkL~~~G~~Vds~~VY~T~~h--p~~~~~~~~alk~~~~~d~ivfFSPsgv~~ 200 (260)
T KOG4132|consen 146 DILPKKLHDKGIRVDSCEVYETREH--PDGFKQFIHALKECGFIDWIVFFSPSGVKS 200 (260)
T ss_pred HHHHHHHHhCCceeeEEEEEeeeec--ccHHHHHHHHHHhcCCcceEEEECcchHHH
Confidence 45778888999886 1 112211 133457778888774 3899999998864
No 120
>PF08132 AdoMetDC_leader: S-adenosyl-l-methionine decarboxylase leader peptide; InterPro: IPR012511 This family consists of the S-adenosyl-l-methionine decarboxylase (AdoMetDC) leader peptides. AdoMetDC is a key regulatory enzyme in the biosynthesis of polyamines. All expressed plant AdoMetDC mRNA 5, leader sequences contain a highly conserved pair of overlapping upstream ORFs (uORFs) that overlap by one base. Sequences of the small uORFs are highly conserved between monocot, dicot and gymnosperm AdoMetDC mRNA species, suggesting a translational regulatory mechanism [].
Probab=24.45 E-value=74 Score=18.90 Aligned_cols=24 Identities=42% Similarity=0.432 Sum_probs=17.9
Q ss_pred CCCCCCCCCCcccEEEecccCcCc
Q 039184 3 SSSSSHPRNNKYDVFLSFKGEDTR 26 (158)
Q Consensus 3 ~s~~s~~~~~~~DVFISys~~D~~ 26 (158)
+||+++...-.|.+=+.|+=+|.|
T Consensus 10 ssssss~~s~~yeaPLgYsIEDvR 33 (54)
T PF08132_consen 10 SSSSSSSNSLFYEAPLGYSIEDVR 33 (54)
T ss_pred ccccccccceEEeccccceeeecc
Confidence 345555566778999999999975
No 121
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=24.44 E-value=1.8e+02 Score=21.40 Aligned_cols=32 Identities=28% Similarity=0.224 Sum_probs=18.8
Q ss_pred ccEEEecccCcCchhHHHHHHHHHhcCCceEEeeC
Q 039184 14 YDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDN 48 (158)
Q Consensus 14 ~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~ 48 (158)
--+.|.+...| .|...|...|++.||-|--+.
T Consensus 53 Tt~~l~q~~~D---~Fg~aL~~aLR~~GYaV~e~~ 84 (151)
T PRK13883 53 TRFELQQPTPD---AFGQALVKALRDKGYALLEYN 84 (151)
T ss_pred eEEEEecCCCc---HHHHHHHHHHHHcCeEEEecC
Confidence 33455443333 677777777777777765443
No 122
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=24.15 E-value=1.2e+02 Score=20.46 Aligned_cols=27 Identities=26% Similarity=0.238 Sum_probs=17.1
Q ss_pred EEEecccCcCchhHHHHHHHHHhcCCceEE
Q 039184 16 VFLSFKGEDTRDNFTSHLYSALSQKGIETF 45 (158)
Q Consensus 16 VFISys~~D~~~~fv~~L~~~L~~~gi~v~ 45 (158)
++||++++. .-+....+.++++|.++.
T Consensus 51 I~iS~sG~t---~e~~~~~~~a~~~g~~vi 77 (126)
T cd05008 51 IAISQSGET---ADTLAALRLAKEKGAKTV 77 (126)
T ss_pred EEEeCCcCC---HHHHHHHHHHHHcCCeEE
Confidence 466777765 235555577777777664
No 123
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=23.93 E-value=3.8e+02 Score=21.43 Aligned_cols=48 Identities=17% Similarity=0.253 Sum_probs=25.6
Q ss_pred cEEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCC-ccchHHHHH
Q 039184 15 DVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRG-DEISQSLVD 62 (158)
Q Consensus 15 DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G-~~~~~~i~~ 62 (158)
.|.|-|...+--+..+..+.+.|++.|+.+-....+.++ .++...+.+
T Consensus 140 ~v~ii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~s~~i~~ 188 (347)
T cd06335 140 KVALLLDNTGWGRSNRKDLTAALAARGLKPVAVEWFNWGDKDMTAQLLR 188 (347)
T ss_pred eEEEEeccCchhhhHHHHHHHHHHHcCCeeEEEeeecCCCccHHHHHHH
Confidence 344444433223456777777777778776433335554 344444433
No 124
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=23.85 E-value=3.1e+02 Score=20.42 Aligned_cols=63 Identities=11% Similarity=0.162 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHhc-CCceEEe-eCC-CCCCc-------------cchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHH
Q 039184 27 DNFTSHLYSALSQ-KGIETFI-DND-LKRGD-------------EISQSLVDAIEASSISIIIFSESYASSSWCLDELLR 90 (158)
Q Consensus 27 ~~fv~~L~~~L~~-~gi~v~~-d~~-i~~G~-------------~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~ 90 (158)
+..+..+.+.++. .|..+-+ +-. ..+++ +.. . .+.+.+++ .|++-||.|..+. ...+..
T Consensus 16 ~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~-~~~l~~aD-~ii~gsPty~g~~--~~~lk~ 90 (200)
T PRK03767 16 ETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVA-T-PDELADYD-AIIFGTPTRFGNM--AGQMRN 90 (200)
T ss_pred HHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCcc-C-HHHHHhCC-EEEEEecccCCCc--hHHHHH
Confidence 5788999999987 8877643 211 11111 111 1 46678888 6788899987542 234555
Q ss_pred HHHH
Q 039184 91 ILEC 94 (158)
Q Consensus 91 a~~~ 94 (158)
+++.
T Consensus 91 fld~ 94 (200)
T PRK03767 91 FLDQ 94 (200)
T ss_pred HHHH
Confidence 5554
No 125
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=23.62 E-value=2.8e+02 Score=19.79 Aligned_cols=63 Identities=14% Similarity=0.076 Sum_probs=36.5
Q ss_pred CCc-cchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHHHHHHhhcCCceeeEEEeeCCccccc
Q 039184 52 RGD-EISQSLVDAIEASSISIIIFSESYASSSWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRK 116 (158)
Q Consensus 52 ~G~-~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPI~~~v~p~~v~~ 116 (158)
+|. .+..-....+..++.+|++++.+-..|--...++...+.... ...-+|+++=....|+.+
T Consensus 58 ~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~--~~~~~piilvgNK~Dl~~ 121 (172)
T cd04141 58 AGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVR--LTEDIPLVLVGNKVDLES 121 (172)
T ss_pred CCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhc--CCCCCCEEEEEEChhhhh
Confidence 453 333333466788999999999876665444444444443322 112357777666777653
No 126
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=23.57 E-value=2.3e+02 Score=19.47 Aligned_cols=45 Identities=16% Similarity=0.315 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeec
Q 039184 27 DNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSE 76 (158)
Q Consensus 27 ~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~ 76 (158)
+.+|..|.+.|+++|+.+-+-. +. ..... ...+...+.+|++.|.
T Consensus 11 e~~A~~ia~~l~~~g~~~~~~~-~~---~~~~~-~~~~~~~~~~i~~~sT 55 (143)
T PF00258_consen 11 EKMAEAIAEGLRERGVEVRVVD-LD---DFDDS-PSDLSEYDLLIFGVST 55 (143)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEE-GG---GSCHH-HHHHCTTSEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCceeeec-hh---hhhhh-hhhhhhhceeeEeecc
Confidence 5899999999999998654322 11 11111 3456667766666653
No 127
>PRK05568 flavodoxin; Provisional
Probab=23.22 E-value=2.6e+02 Score=19.25 Aligned_cols=56 Identities=14% Similarity=0.280 Sum_probs=34.7
Q ss_pred EEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeecCCcCC
Q 039184 16 VFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYASS 81 (158)
Q Consensus 16 VFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S 81 (158)
||.|-.+.- +..++.|.+.|+..|+.+-+.+ +. +.- ...+.+++ .|++-||.|...
T Consensus 7 vY~S~~GnT--~~~a~~i~~~~~~~g~~v~~~~-~~--~~~----~~~~~~~d-~iilgsp~y~~~ 62 (142)
T PRK05568 7 IYWSGTGNT--EAMANLIAEGAKENGAEVKLLN-VS--EAS----VDDVKGAD-VVALGSPAMGDE 62 (142)
T ss_pred EEECCCchH--HHHHHHHHHHHHHCCCeEEEEE-CC--CCC----HHHHHhCC-EEEEECCccCcc
Confidence 455544443 5789999999998898764422 11 100 12466777 567778888654
No 128
>PF07283 TrbH: Conjugal transfer protein TrbH; InterPro: IPR010837 This entry represents TrbH, a bacterial conjugal transfer protein approximately 150 residues long. TrbH contains a putative membrane lipoprotein lipid attachment site [].
Probab=23.18 E-value=2e+02 Score=20.36 Aligned_cols=33 Identities=30% Similarity=0.300 Sum_probs=24.7
Q ss_pred ccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCC
Q 039184 14 YDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDND 49 (158)
Q Consensus 14 ~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~ 49 (158)
--+.|-.... +.|...|.+.|+++||-|--++.
T Consensus 25 Tt~~L~q~~~---d~Fg~aL~~~LR~~GYaV~e~~~ 57 (121)
T PF07283_consen 25 TTFELKQKDP---DPFGQALENALRAKGYAVIEDDP 57 (121)
T ss_pred cEEEEEcCCC---ChHHHHHHHHHHhcCcEEEecCC
Confidence 3455644433 48999999999999999977654
No 129
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=23.17 E-value=82 Score=19.04 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=14.7
Q ss_pred hHHHHHHHHHhcCCceEEeeCC
Q 039184 28 NFTSHLYSALSQKGIETFIDND 49 (158)
Q Consensus 28 ~fv~~L~~~L~~~gi~v~~d~~ 49 (158)
.-+..+...|+.+||.+++...
T Consensus 10 ~ea~~i~~~L~~~gI~~~v~~~ 31 (67)
T PF09413_consen 10 IEAELIKGLLEENGIPAFVKNE 31 (67)
T ss_dssp HHHHHHHHHHHHTT--EE--S-
T ss_pred HHHHHHHHHHHhCCCcEEEECC
Confidence 4578899999999999998765
No 130
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=23.11 E-value=3.2e+02 Score=20.23 Aligned_cols=54 Identities=30% Similarity=0.431 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHhcCC-ceEEeeC-C--CCCCc----cch---HHHHHHhHhcceEEEEeecCCcCC
Q 039184 27 DNFTSHLYSALSQKG-IETFIDN-D--LKRGD----EIS---QSLVDAIEASSISIIIFSESYASS 81 (158)
Q Consensus 27 ~~fv~~L~~~L~~~g-i~v~~d~-~--i~~G~----~~~---~~i~~~i~~s~~~I~vlS~~~~~S 81 (158)
..++..+.+.|+..+ +.+..+. . +...+ ... ..+.+.|..++ .+++.||.|..|
T Consensus 17 ~~la~~~~~~l~~~~~~~~~~~~~~lP~~~~d~~~~~~p~~v~~~~~~i~~aD-~li~~tPeYn~s 81 (184)
T COG0431 17 RALAEAAAKLLPAGGEVEVEFDDLDLPLYNEDLEADGLPPAVQALREAIAAAD-GLIIATPEYNGS 81 (184)
T ss_pred HHHHHHHHHhhcccCceEEEecccccCCCCcchhhccCCHHHHHHHHHHHhCC-EEEEECCccCCC
Confidence 467888888888876 4444422 2 21111 232 36668888888 567889999876
No 131
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=23.09 E-value=3.7e+02 Score=21.00 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=30.7
Q ss_pred EEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCC-ccchHHHHHHhHhc
Q 039184 16 VFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRG-DEISQSLVDAIEAS 67 (158)
Q Consensus 16 VFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G-~~~~~~i~~~i~~s 67 (158)
|.+-|...+--...+..+.+.|+..|+++-....+.+| .++...+ ..+.++
T Consensus 138 v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l-~~i~~~ 189 (334)
T cd06342 138 VAIIDDKTAYGQGLADEFKKALKAAGGKVVAREGTTDGATDFSAIL-TKIKAA 189 (334)
T ss_pred EEEEeCCcchhhHHHHHHHHHHHHcCCEEEEEecCCCCCccHHHHH-HHHHhc
Confidence 54545444333467788888888889988654446666 4454444 445543
No 132
>PRK09701 D-allose transporter subunit; Provisional
Probab=22.97 E-value=2.7e+02 Score=21.98 Aligned_cols=15 Identities=33% Similarity=0.226 Sum_probs=10.2
Q ss_pred ceeeEEEeeCCcccc
Q 039184 101 IVIPVFYRVDPSHVR 115 (158)
Q Consensus 101 ~iiPI~~~v~p~~v~ 115 (158)
-+.|-+..+++..|+
T Consensus 296 ~~~~~~~~~~~~~~~ 310 (311)
T PRK09701 296 DKAPEFKLVDSILVT 310 (311)
T ss_pred ccCCceeeeeeeecc
Confidence 466777777777665
No 133
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=22.86 E-value=3.1e+02 Score=20.04 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=8.9
Q ss_pred HHHHHHHHHhcCCceEEe
Q 039184 29 FTSHLYSALSQKGIETFI 46 (158)
Q Consensus 29 fv~~L~~~L~~~gi~v~~ 46 (158)
|+..|....+++|.++|+
T Consensus 36 l~~~l~~~~~~~~~~ifl 53 (172)
T PF03808_consen 36 LFPDLLRRAEQRGKRIFL 53 (172)
T ss_pred HHHHHHHHHHHcCCeEEE
Confidence 444444445555555554
No 134
>COG1806 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.82 E-value=1.8e+02 Score=23.54 Aligned_cols=68 Identities=26% Similarity=0.224 Sum_probs=40.4
Q ss_pred HHHHHhcCCceEEeeCC-CCCCccchHHHHHHhHhcceEEEEeec--------------------CCcCChhHHHHHHHH
Q 039184 33 LYSALSQKGIETFIDND-LKRGDEISQSLVDAIEASSISIIIFSE--------------------SYASSSWCLDELLRI 91 (158)
Q Consensus 33 L~~~L~~~gi~v~~d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS~--------------------~~~~S~wc~~El~~a 91 (158)
+...|..+|+++ ..- +.|++...+.|......= ++=+.+|| .|.+-.-|++|+..+
T Consensus 160 tS~YLA~q~ika--AN~PlVpe~~~p~~L~~~~~~~-i~GLti~peRL~~IR~eRL~~~~~~~~s~Ya~~~~~~eEl~~a 236 (273)
T COG1806 160 TSLYLALQGIKA--ANYPLVPEDPEPDELPAALKPL-LFGLTISPERLSAIREERLKSLGLRENSRYASLDQCREELAYA 236 (273)
T ss_pred hHHHHHHhcchh--ccCCcCCCCCChhhhhhcccce-EEEEecCHHHHHHHHHHHhhccCCCCccccccHHHHHHHHHHH
Confidence 334455556554 333 667777776666655544 44444443 367778899999998
Q ss_pred HHHHhhcCCcee
Q 039184 92 LECKTNYGQIVI 103 (158)
Q Consensus 92 ~~~~~~~~~~ii 103 (158)
-...+..+..+|
T Consensus 237 e~l~~r~~~pvi 248 (273)
T COG1806 237 EALFRRNGIPVI 248 (273)
T ss_pred HHHHHHhCCCEE
Confidence 776544444443
No 135
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=22.37 E-value=1.6e+02 Score=20.74 Aligned_cols=62 Identities=19% Similarity=0.202 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHhcCCceEEeeCCCCCC-ccchHHHHHHhHhcceEEEEeecCCcCChhHHHHH
Q 039184 27 DNFTSHLYSALSQKGIETFIDNDLKRG-DEISQSLVDAIEASSISIIIFSESYASSSWCLDEL 88 (158)
Q Consensus 27 ~~fv~~L~~~L~~~gi~v~~d~~i~~G-~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El 88 (158)
+.-...|...|++.|+.+..-.-+.-. +.+.+.+.+++++++++|..=.-..-..++..+=+
T Consensus 16 d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~D~VittGG~g~~~~D~t~~a~ 78 (144)
T PF00994_consen 16 DSNGPFLAALLEELGIEVIRYGIVPDDPDAIKEALRRALDRADLVITTGGTGPGPDDVTPEAL 78 (144)
T ss_dssp BHHHHHHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHHHTTSEEEEESSSSSSTTCHHHHHH
T ss_pred EhHHHHHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhhccCCEEEEcCCcCcccCCcccHHH
Confidence 456778889999999987543212211 35556777777788765544433444445554433
No 136
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=22.10 E-value=1.4e+02 Score=20.33 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=17.5
Q ss_pred EEEecccCcCchhHHHHHHHHHhcCCceEE
Q 039184 16 VFLSFKGEDTRDNFTSHLYSALSQKGIETF 45 (158)
Q Consensus 16 VFISys~~D~~~~fv~~L~~~L~~~gi~v~ 45 (158)
++||++++. .-+....+.++++|.++-
T Consensus 52 I~iS~SG~t---~~~~~~~~~a~~~g~~vi 78 (120)
T cd05710 52 ILASHSGNT---KETVAAAKFAKEKGATVI 78 (120)
T ss_pred EEEeCCCCC---hHHHHHHHHHHHcCCeEE
Confidence 366777765 335556677788887754
No 137
>PF14162 YozD: YozD-like protein
Probab=21.98 E-value=1.2e+02 Score=18.33 Aligned_cols=27 Identities=22% Similarity=0.540 Sum_probs=20.7
Q ss_pred CcccEEEecccCcCchhHHHHHHHHHhcCCceE
Q 039184 12 NKYDVFLSFKGEDTRDNFTSHLYSALSQKGIET 44 (158)
Q Consensus 12 ~~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v 44 (158)
++.||+| |+ +..+.-++..|-++|+-.
T Consensus 2 keiev~I-----DT-EEIAefFy~eL~kRGyvP 28 (57)
T PF14162_consen 2 KEIEVVI-----DT-EEIAEFFYHELVKRGYVP 28 (57)
T ss_pred CceEEEe-----cH-HHHHHHHHHHHHHccCCC
Confidence 3567887 44 578899999999998754
No 138
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=21.81 E-value=2.5e+02 Score=23.42 Aligned_cols=61 Identities=25% Similarity=0.468 Sum_probs=41.3
Q ss_pred cccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhH-hcceEEEEeecCCcCC
Q 039184 13 KYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIE-ASSISIIIFSESYASS 81 (158)
Q Consensus 13 ~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~-~s~~~I~vlS~~~~~S 81 (158)
-||+-|.|..+| |...|.++- =.||.+++|. .|.++.+.....+. .+|+.++=.=..|.+.
T Consensus 196 GfD~~idyk~~d----~~~~L~~a~-P~GIDvyfeN---VGg~v~DAv~~~ln~~aRi~~CG~IS~YN~~ 257 (340)
T COG2130 196 GFDAGIDYKAED----FAQALKEAC-PKGIDVYFEN---VGGEVLDAVLPLLNLFARIPVCGAISQYNAP 257 (340)
T ss_pred CCceeeecCccc----HHHHHHHHC-CCCeEEEEEc---CCchHHHHHHHhhccccceeeeeehhhcCCC
Confidence 489999997765 665664433 2799999976 46556555555555 6777777666667654
No 139
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=21.78 E-value=2.7e+02 Score=22.95 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=24.4
Q ss_pred HHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhH-hcceEEEEe
Q 039184 30 TSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIE-ASSISIIIF 74 (158)
Q Consensus 30 v~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~-~s~~~I~vl 74 (158)
+..|.+.|+..|+.+-.......++.-...+.+.++ .+|++|+..
T Consensus 157 ~~~l~~~~~~~gi~v~~~~~~~~~~~d~~~~l~~ik~~~rvii~~~ 202 (387)
T cd06386 157 LEGVHHVFQEEGYHMSIYPFDETKDLDLDEIIRAIQASERVVIMCA 202 (387)
T ss_pred HHHHHHHHHhcCceEEEEecCCCCcccHHHHHHHHHhcCcEEEEec
Confidence 677778888888877654323334322334444454 444444433
No 140
>PLN02924 thymidylate kinase
Probab=21.66 E-value=3.3e+02 Score=20.92 Aligned_cols=30 Identities=20% Similarity=0.311 Sum_probs=25.0
Q ss_pred EEEecccCcC--chhHHHHHHHHHhcCCceEE
Q 039184 16 VFLSFKGEDT--RDNFTSHLYSALSQKGIETF 45 (158)
Q Consensus 16 VFISys~~D~--~~~fv~~L~~~L~~~gi~v~ 45 (158)
.||..-+-|- +.+.+..|.+.|+.+|+++-
T Consensus 17 ~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~ 48 (220)
T PLN02924 17 ALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAE 48 (220)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCCce
Confidence 6899887774 56889999999999998863
No 141
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=21.65 E-value=4.1e+02 Score=21.14 Aligned_cols=58 Identities=7% Similarity=0.045 Sum_probs=36.1
Q ss_pred cEEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCc-cchHHHHHHhHh--cceEEEE
Q 039184 15 DVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGD-EISQSLVDAIEA--SSISIII 73 (158)
Q Consensus 15 DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~-~~~~~i~~~i~~--s~~~I~v 73 (158)
.|.+-|...+--+.+...+.+.|++.|+.+-....+.+|. ++...+. .|.. .+.+++.
T Consensus 138 ~v~~i~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~-~l~~~~pd~V~~~ 198 (333)
T cd06328 138 KIATLAQDYAFGRDGVAAFKAALEKLGAAIVTEEYAPTDTTDFTPYAQ-RLLDALKKVLFVI 198 (333)
T ss_pred eEEEEecCccccHHHHHHHHHHHHhCCCEEeeeeeCCCCCcchHHHHH-HHHhcCCCEEEEE
Confidence 4555565444335678888899999999987554477775 4555544 4444 3444433
No 142
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=21.62 E-value=2.6e+02 Score=18.66 Aligned_cols=28 Identities=7% Similarity=0.141 Sum_probs=20.2
Q ss_pred CCc-cchHHHHHHhHhcceEEEEeecCCc
Q 039184 52 RGD-EISQSLVDAIEASSISIIIFSESYA 79 (158)
Q Consensus 52 ~G~-~~~~~i~~~i~~s~~~I~vlS~~~~ 79 (158)
||. .+.......+.+++.+|++++..-.
T Consensus 57 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 85 (159)
T cd00154 57 AGQERFRSITPSYYRGAHGAILVYDITNR 85 (159)
T ss_pred CChHHHHHHHHHHhcCCCEEEEEEECCCH
Confidence 553 3444566778899999999998653
No 143
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=21.61 E-value=2.8e+02 Score=21.95 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHhcCCceEEeeCCCCCCc--cchHHHHHHhHhcc
Q 039184 27 DNFTSHLYSALSQKGIETFIDNDLKRGD--EISQSLVDAIEASS 68 (158)
Q Consensus 27 ~~fv~~L~~~L~~~gi~v~~d~~i~~G~--~~~~~i~~~i~~s~ 68 (158)
...+..+.+.+++.|+.+-....+.++. .-...+.+.|+.+.
T Consensus 174 ~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~ 217 (348)
T cd06350 174 RSGLSDLEEELEKNGICIAFVEAIPPSSTEEDIKRILKKLKSST 217 (348)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEEccCCCcHHHHHHHHHHHHhCC
Confidence 4566777777777777764333355551 22224445555544
No 144
>PTZ00445 p36-lilke protein; Provisional
Probab=21.59 E-value=2.7e+02 Score=21.86 Aligned_cols=20 Identities=15% Similarity=0.272 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHhcCCceEEe
Q 039184 27 DNFTSHLYSALSQKGIETFI 46 (158)
Q Consensus 27 ~~fv~~L~~~L~~~gi~v~~ 46 (158)
..-+..+++.|++.||++-.
T Consensus 28 ~~~~~~~v~~L~~~GIk~Va 47 (219)
T PTZ00445 28 HESADKFVDLLNECGIKVIA 47 (219)
T ss_pred HHHHHHHHHHHHHcCCeEEE
Confidence 35678888999999999654
No 145
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=21.26 E-value=86 Score=21.01 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHhcCCceEEe
Q 039184 27 DNFTSHLYSALSQKGIETFI 46 (158)
Q Consensus 27 ~~fv~~L~~~L~~~gi~v~~ 46 (158)
..|++.|...|+.+|++|-.
T Consensus 8 ~~fv~~Lk~lLk~rGi~v~~ 27 (90)
T PF02337_consen 8 QPFVSILKHLLKERGIRVKK 27 (90)
T ss_dssp HHHHHHHHHHHHCCT----H
T ss_pred hHHHHHHHHHHHHcCeeecH
Confidence 37999999999999999854
No 146
>PLN02734 glycyl-tRNA synthetase
Probab=21.20 E-value=1.2e+02 Score=27.92 Aligned_cols=45 Identities=20% Similarity=0.241 Sum_probs=30.7
Q ss_pred CcccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCC-CCCCccch
Q 039184 12 NKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDND-LKRGDEIS 57 (158)
Q Consensus 12 ~~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~-i~~G~~~~ 57 (158)
++..|+.--.+++ ....+..|+..|++.|+++-+|.+ -.+|..+.
T Consensus 571 ~qVaIlPL~~~ee-~~~~A~eLa~~LR~~GIrVelDd~~~SIGKRyr 616 (684)
T PLN02734 571 IKCTVFPLVQNQQ-LNAVAKVISKELTAAGISHKIDITGTSIGKRYA 616 (684)
T ss_pred cEEEEEEecCChH-HHHHHHHHHHHHHhCCCEEEEECCCCCHhHHHH
Confidence 3455554433322 357899999999999999999986 45555443
No 147
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=21.08 E-value=3.3e+02 Score=19.63 Aligned_cols=66 Identities=21% Similarity=0.352 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHhcCC--ceEEeeCCCCCCccchHH-HHHHhHh--cceEEEEeecCCcCC--hhHHHHHHHHHHH
Q 039184 27 DNFTSHLYSALSQKG--IETFIDNDLKRGDEISQS-LVDAIEA--SSISIIIFSESYASS--SWCLDELLRILEC 94 (158)
Q Consensus 27 ~~fv~~L~~~L~~~g--i~v~~d~~i~~G~~~~~~-i~~~i~~--s~~~I~vlS~~~~~S--~wc~~El~~a~~~ 94 (158)
+..+..|.+.|.+.+ +.|..- +.-|.+..++ |.+..+. -+++++-+.|.|..+ .-+.+++..++..
T Consensus 71 ~~q~~~l~~~L~~~~~~~~v~~a--mry~~P~i~~~l~~l~~~g~~~iivlPl~P~~S~~Tt~s~~~~~~~~~~~ 143 (159)
T cd03411 71 RAQAEALEKALDERGIDVKVYLA--MRYGPPSIEEALEELKADGVDRIVVLPLYPQYSASTTGSYLDEVERALKK 143 (159)
T ss_pred HHHHHHHHHHHhccCCCcEEEeh--HhcCCCCHHHHHHHHHHcCCCEEEEEECCcccccccHHHHHHHHHHHHHh
Confidence 356777777776653 445443 3344444433 4444433 566777788887643 4456676666543
No 148
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=21.01 E-value=2.9e+02 Score=18.92 Aligned_cols=73 Identities=15% Similarity=0.299 Sum_probs=40.4
Q ss_pred EEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchH---HHHHHhHhcceE-EEEeecCCcCChhHHHHHHHH
Q 039184 16 VFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQ---SLVDAIEASSIS-IIIFSESYASSSWCLDELLRI 91 (158)
Q Consensus 16 VFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~---~i~~~i~~s~~~-I~vlS~~~~~S~wc~~El~~a 91 (158)
||+|+|-.+ .-...|....++.|+.+-+-. +.+| ++.+ .+.+-+.+.+.. =+.+.|..+.
T Consensus 2 iFvS~SMP~---~~L~~l~~~a~~~~~~~V~RG-~~~g-~~~~t~~~~~~l~~~~~~~~~v~IdP~~F~----------- 65 (113)
T PF09673_consen 2 IFVSFSMPD---ASLRNLLKQAERAGVVVVFRG-FPDG-SFKPTAKAIQELLRKDDPCPGVQIDPRLFR----------- 65 (113)
T ss_pred EEEECCCCH---HHHHHHHHHHHhCCcEEEEEC-CCCC-CHHHHHHHHHHHhhccCCCcceeEChhHHh-----------
Confidence 799999876 334555566666677776643 6666 5543 233333333322 3444454332
Q ss_pred HHHHhhcCCceeeEEEee
Q 039184 92 LECKTNYGQIVIPVFYRV 109 (158)
Q Consensus 92 ~~~~~~~~~~iiPI~~~v 109 (158)
.-+...+|.+.-.
T Consensus 66 -----~y~I~~VPa~V~~ 78 (113)
T PF09673_consen 66 -----QYNITAVPAFVVV 78 (113)
T ss_pred -----hCCceEcCEEEEE
Confidence 3355677777533
No 149
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=20.87 E-value=3.2e+02 Score=19.38 Aligned_cols=31 Identities=13% Similarity=0.290 Sum_probs=22.6
Q ss_pred CCCc-----cchHHHHHHhHhcceEEEEeecCCcCC
Q 039184 51 KRGD-----EISQSLVDAIEASSISIIIFSESYASS 81 (158)
Q Consensus 51 ~~G~-----~~~~~i~~~i~~s~~~I~vlS~~~~~S 81 (158)
.||. .+..++..++++++.+|+|+..+-..+
T Consensus 44 tpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s 79 (158)
T PRK15467 44 TPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPES 79 (158)
T ss_pred CCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCccc
Confidence 4675 455566677899999999998874433
No 150
>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases. Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model.
Probab=20.71 E-value=2.1e+02 Score=23.70 Aligned_cols=27 Identities=7% Similarity=-0.128 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHhcCCceEEeeCCCCCC
Q 039184 27 DNFTSHLYSALSQKGIETFIDNDLKRG 53 (158)
Q Consensus 27 ~~fv~~L~~~L~~~gi~v~~d~~i~~G 53 (158)
...+..+.+.|++.|+.+-....+.++
T Consensus 150 ~~~~~~~~~~~~~~g~~iv~~~~~~~~ 176 (404)
T cd06370 150 SSVFETLKEEAELRNITISHVEYYADF 176 (404)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEECCC
Confidence 456677777777788877544446555
No 151
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=20.47 E-value=3.9e+02 Score=20.97 Aligned_cols=42 Identities=17% Similarity=0.040 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcc
Q 039184 27 DNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASS 68 (158)
Q Consensus 27 ~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~ 68 (158)
...+..+...|++.|+.+--...+.+|+.=...+...|..++
T Consensus 151 ~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~ 192 (312)
T cd06346 151 VGLADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAAGG 192 (312)
T ss_pred hHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcC
Confidence 456667777777888887543336666433333444444433
No 152
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=20.40 E-value=2e+02 Score=20.02 Aligned_cols=44 Identities=20% Similarity=0.276 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHhcCCceEEeeCCCCCC-ccchHHHHHHhHhcceE
Q 039184 27 DNFTSHLYSALSQKGIETFIDNDLKRG-DEISQSLVDAIEASSIS 70 (158)
Q Consensus 27 ~~fv~~L~~~L~~~gi~v~~d~~i~~G-~~~~~~i~~~i~~s~~~ 70 (158)
+.-...|...|++.|+.+-.-..+.-. +.+.+.+.+++++++++
T Consensus 18 d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~Dlv 62 (133)
T cd00758 18 DTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLV 62 (133)
T ss_pred EchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEE
Confidence 345667888899999887432212211 23456666676676644
No 153
>PF14792 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1RZT_A 3PML_A 2PFN_A 3HX0_K 3HWT_A 2GWS_E 2BCQ_A 3UPQ_A 2BCS_A 3UQ2_A ....
Probab=20.40 E-value=1.3e+02 Score=20.68 Aligned_cols=32 Identities=19% Similarity=0.377 Sum_probs=24.7
Q ss_pred cccEEEecccCcC----chhHHHHHHHHHhcCCceE
Q 039184 13 KYDVFLSFKGEDT----RDNFTSHLYSALSQKGIET 44 (158)
Q Consensus 13 ~~DVFISys~~D~----~~~fv~~L~~~L~~~gi~v 44 (158)
..|+-|++...+. ...+...|.+.|++.|+-.
T Consensus 42 DiDiLIt~~~~~~~~~~~~~~l~~lv~~L~~~g~i~ 77 (112)
T PF14792_consen 42 DIDILITHPDPSSVSKKLEGLLEKLVKRLEEKGFIT 77 (112)
T ss_dssp SEEEEEEETTCSTTTCSTTCHHHHHHHHHHHTTSEE
T ss_pred CeEEEEeCCCcCcchhhHHHHHHHHHHHHHhCCeEE
Confidence 4788999876654 2578999999999988644
No 154
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=20.15 E-value=2.5e+02 Score=21.56 Aligned_cols=98 Identities=15% Similarity=0.271 Sum_probs=58.7
Q ss_pred EEEecccCcC--chhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHh---------------------------
Q 039184 16 VFLSFKGEDT--RDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEA--------------------------- 66 (158)
Q Consensus 16 VFISys~~D~--~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~--------------------------- 66 (158)
.||.+=+-|- +.+.+..|.+.|+.+|++|.+-.. +.|.++.+.|.+.+.+
T Consensus 4 ~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trE-P~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~~~i~ 82 (208)
T COG0125 4 MFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTRE-PGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLEEVIK 82 (208)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC-CCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4777766553 467899999999999998877553 2223333333332221
Q ss_pred --cceEEEEeecCCcCChhHHHH--------HHHHHHHH-hhcCCceeeEEEeeCCccc
Q 039184 67 --SSISIIIFSESYASSSWCLDE--------LLRILECK-TNYGQIVIPVFYRVDPSHV 114 (158)
Q Consensus 67 --s~~~I~vlS~~~~~S~wc~~E--------l~~a~~~~-~~~~~~iiPI~~~v~p~~v 114 (158)
..-.-+|++..|+-|..+..- ....+... ..+-.+-+-++++++|+.-
T Consensus 83 pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~a 141 (208)
T COG0125 83 PALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVA 141 (208)
T ss_pred HhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHH
Confidence 011247889999988877662 22222221 1122456678889998873
No 155
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=20.13 E-value=2e+02 Score=20.42 Aligned_cols=28 Identities=14% Similarity=0.286 Sum_probs=20.3
Q ss_pred EEecccCcCchhHHHHHHHHHhcCCceEE
Q 039184 17 FLSFKGEDTRDNFTSHLYSALSQKGIETF 45 (158)
Q Consensus 17 FISys~~D~~~~fv~~L~~~L~~~gi~v~ 45 (158)
++.+++.. +-.++..|...|.++|+++.
T Consensus 5 VvG~~~sG-KTTl~~~Li~~l~~~g~~v~ 32 (140)
T PF03205_consen 5 VVGPKNSG-KTTLIRKLINELKRRGYRVA 32 (140)
T ss_dssp EEESTTSS-HHHHHHHHHHHHHHTT--EE
T ss_pred EECCCCCC-HHHHHHHHHHHHhHcCCceE
Confidence 45565444 46899999999999999887
No 156
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=20.01 E-value=1.7e+02 Score=21.00 Aligned_cols=64 Identities=19% Similarity=0.143 Sum_probs=35.2
Q ss_pred ccE--EEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHH
Q 039184 14 YDV--FLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRI 91 (158)
Q Consensus 14 ~DV--FISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a 91 (158)
-|+ +||++++. ..+..+.+.++++|.++..=.. .++.++. +.|+..+.+-+.+. --..|+..+
T Consensus 80 ~D~~i~iS~sG~t---~~~~~~~~~a~~~g~~ii~iT~-~~~s~l~-------~~ad~~l~~~~~~~----~~~~~~~~~ 144 (154)
T TIGR00441 80 GDVLLGISTSGNS---KNVLKAIEAAKDKGMKTITLAG-KDGGKMA-------GLADIELRVPHFYT----PRIQEIHIK 144 (154)
T ss_pred CCEEEEEcCCCCC---HHHHHHHHHHHHCCCEEEEEeC-CCCCchh-------hhCCEEEEeCCCCc----HHHHHHHHH
Confidence 355 66777765 4566666888888887754110 1223332 35777666555533 234455554
Q ss_pred H
Q 039184 92 L 92 (158)
Q Consensus 92 ~ 92 (158)
+
T Consensus 145 ~ 145 (154)
T TIGR00441 145 V 145 (154)
T ss_pred H
Confidence 3
Done!