Query 039184
Match_columns 158
No_of_seqs 161 out of 1266
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 11:49:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039184.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039184hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 1E-49 3.5E-54 303.7 12.5 151 5-155 27-180 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 1.3E-49 4.5E-54 298.0 10.4 146 10-155 5-152 (176)
3 3h16_A TIR protein; bacteria T 100.0 8.1E-36 2.8E-40 219.0 2.3 136 8-146 15-151 (154)
4 3ub2_A TOLL/interleukin-1 rece 100.0 2.2E-31 7.6E-36 194.1 2.1 132 6-143 3-145 (146)
5 2js7_A Myeloid differentiation 99.9 5.7E-27 2E-31 173.1 6.1 106 8-115 11-121 (160)
6 1fyx_A TOLL-like receptor 2; b 99.9 3.7E-27 1.3E-31 172.1 2.2 104 10-115 2-111 (149)
7 2j67_A TOLL like receptor 10; 99.9 1.4E-26 4.7E-31 173.8 4.1 107 7-115 29-141 (178)
8 1t3g_A X-linked interleukin-1 99.9 1.3E-25 4.5E-30 165.6 7.2 101 12-112 1-115 (159)
9 3j0a_A TOLL-like receptor 5; m 99.8 2.7E-20 9.2E-25 166.1 7.1 101 9-111 666-774 (844)
10 1eiw_A Hypothetical protein MT 98.5 1.3E-07 4.4E-12 65.3 5.4 72 12-106 3-74 (111)
11 3hyn_A Putative signal transdu 97.4 0.00064 2.2E-08 50.5 7.3 83 21-108 27-118 (189)
12 2f62_A Nucleoside 2-deoxyribos 95.7 0.043 1.5E-06 39.7 7.5 70 27-96 26-99 (161)
13 2khz_A C-MYC-responsive protei 92.4 0.9 3.1E-05 32.5 8.5 82 11-96 9-104 (165)
14 3ehd_A Uncharacterized conserv 92.1 0.71 2.4E-05 33.3 7.6 69 27-96 19-98 (162)
15 4fyk_A Deoxyribonucleoside 5'- 90.7 1.4 4.9E-05 31.4 7.9 77 15-96 4-95 (152)
16 1s2d_A Purine trans deoxyribos 89.3 1.6 5.4E-05 31.5 7.3 79 15-96 9-110 (167)
17 2yvq_A Carbamoyl-phosphate syn 77.2 5 0.00017 27.8 5.4 62 16-79 27-107 (143)
18 1f8y_A Nucleoside 2-deoxyribos 73.6 5 0.00017 28.4 4.7 79 15-96 5-107 (157)
19 3hly_A Flavodoxin-like domain; 61.5 37 0.0013 23.4 8.8 50 27-80 15-64 (161)
20 2jug_A TUBC protein; docking d 60.2 7.8 0.00027 23.9 3.0 38 30-67 7-48 (78)
21 1v95_A Nuclear receptor coacti 56.9 44 0.0015 22.9 8.0 57 14-73 9-67 (130)
22 1evl_A Threonyl-tRNA synthetas 53.6 21 0.00073 28.6 5.4 58 12-73 297-355 (401)
23 1byr_A Protein (endonuclease); 53.4 35 0.0012 22.9 5.8 37 28-65 14-51 (155)
24 1wu7_A Histidyl-tRNA synthetas 53.2 23 0.00078 28.7 5.5 57 13-73 332-389 (434)
25 2fz5_A Flavodoxin; alpha/beta 50.1 49 0.0017 21.4 7.8 59 27-95 14-74 (137)
26 3net_A Histidyl-tRNA synthetas 49.2 34 0.0012 28.2 6.0 62 11-77 369-431 (465)
27 2i4l_A Proline-tRNA ligase; al 47.9 25 0.00085 28.9 4.9 45 13-57 365-412 (458)
28 4g84_A Histidine--tRNA ligase, 47.5 52 0.0018 26.6 6.9 59 11-72 364-423 (464)
29 1htt_A Histidyl-tRNA synthetas 47.5 21 0.00073 28.7 4.4 59 11-73 325-386 (423)
30 3l4e_A Uncharacterized peptida 47.4 62 0.0021 23.6 6.6 54 16-72 31-85 (206)
31 4g85_A Histidine-tRNA ligase, 45.4 70 0.0024 26.5 7.4 60 11-73 417-477 (517)
32 3fni_A Putative diflavin flavo 44.8 73 0.0025 21.8 8.7 62 16-81 7-70 (159)
33 2q62_A ARSH; alpha/beta, flavo 42.8 78 0.0027 23.7 6.7 54 27-81 51-112 (247)
34 4e51_A Histidine--tRNA ligase; 42.4 46 0.0016 27.5 5.8 63 12-75 353-416 (467)
35 1sc3_B Interleukin-1 beta conv 42.2 7.4 0.00025 24.8 0.7 24 18-41 22-45 (88)
36 2a5l_A Trp repressor binding p 42.1 82 0.0028 21.8 6.5 65 27-94 20-96 (200)
37 1qe0_A Histidyl-tRNA synthetas 41.8 25 0.00086 28.2 4.0 59 12-75 328-387 (420)
38 1nj1_A PROR, proline-tRNA synt 41.6 31 0.0011 28.8 4.7 46 12-57 313-363 (501)
39 2q9u_A A-type flavoprotein; fl 41.4 1.3E+02 0.0043 23.7 8.1 73 15-94 258-332 (414)
40 3lc0_A Histidyl-tRNA synthetas 40.5 75 0.0026 26.1 6.8 60 12-75 360-419 (456)
41 2ql9_B Caspase-7; cysteine pro 37.3 8.8 0.0003 24.8 0.5 30 12-41 9-47 (97)
42 3pid_A UDP-glucose 6-dehydroge 36.4 32 0.0011 28.3 3.8 50 22-71 346-400 (432)
43 2i2x_B MTAC, methyltransferase 35.7 1E+02 0.0035 23.1 6.4 89 15-111 125-213 (258)
44 1qtn_B Caspase-8; apoptosis, d 35.4 8.5 0.00029 24.8 0.2 29 12-40 11-48 (95)
45 1ydg_A Trp repressor binding p 34.7 55 0.0019 23.2 4.6 65 27-94 21-103 (211)
46 1v7p_C Integrin alpha-2; snake 34.6 1.1E+02 0.0037 21.3 6.1 51 54-107 84-145 (200)
47 1qf6_A THRRS, threonyl-tRNA sy 34.2 45 0.0015 28.8 4.6 60 13-77 539-599 (642)
48 2j3l_A Prolyl-tRNA synthetase; 33.8 45 0.0015 28.1 4.5 61 13-77 470-533 (572)
49 3b6i_A Flavoprotein WRBA; flav 33.7 80 0.0027 21.9 5.3 52 27-81 16-82 (198)
50 2dko_B Caspase-3; low barrier 33.6 11 0.00037 24.7 0.5 30 12-41 15-53 (103)
51 1pyo_B Caspase-2; apoptosis, c 33.1 11 0.00038 24.7 0.5 29 13-41 14-51 (105)
52 3ojo_A CAP5O; rossmann fold, c 32.6 57 0.002 26.7 4.8 53 22-75 329-383 (431)
53 1nyr_A Threonyl-tRNA synthetas 32.4 49 0.0017 28.4 4.5 58 13-73 545-603 (645)
54 3hjn_A DTMP kinase, thymidylat 31.8 72 0.0024 22.7 4.8 31 17-47 2-34 (197)
55 2pw6_A Uncharacterized protein 31.7 76 0.0026 24.2 5.1 68 27-96 95-163 (271)
56 3ikl_A DNA polymerase subunit 31.5 69 0.0023 26.7 5.1 51 24-79 361-416 (459)
57 2zt5_A Glycyl-tRNA synthetase; 30.7 75 0.0026 27.8 5.4 60 13-76 559-620 (693)
58 4a7p_A UDP-glucose dehydrogena 30.6 45 0.0015 27.5 3.8 54 22-75 336-397 (446)
59 2p5s_A RAS and EF-hand domain 30.6 1.3E+02 0.0045 20.6 6.6 61 52-115 85-146 (199)
60 2xzd_B Caspase-3; hydrolase-pr 28.6 16 0.00056 24.5 0.7 29 13-41 15-52 (118)
61 1ati_A Glycyl-tRNA synthetase; 28.6 1.2E+02 0.0041 25.3 6.1 60 12-76 397-460 (505)
62 1ycg_A Nitric oxide reductase; 28.5 2E+02 0.007 22.2 7.6 63 16-82 254-317 (398)
63 4hvc_A Bifunctional glutamate/ 28.2 67 0.0023 27.1 4.6 48 11-58 306-364 (519)
64 3en0_A Cyanophycinase; serine 28.2 1.2E+02 0.0043 23.3 5.8 76 16-94 60-139 (291)
65 1bax_A M-PMV MA, M-PMV matrix 28.0 34 0.0012 22.2 2.1 18 27-44 9-26 (94)
66 3a32_A Probable threonyl-tRNA 27.9 39 0.0013 27.9 3.0 57 13-73 338-403 (471)
67 3n75_A LDC, lysine decarboxyla 27.7 1.8E+02 0.006 25.5 7.3 69 28-111 17-85 (715)
68 2amj_A Modulator of drug activ 27.5 1.7E+02 0.0057 20.8 6.2 51 28-81 34-84 (204)
69 1h4v_B Histidyl-tRNA synthetas 27.2 76 0.0026 25.3 4.6 36 12-49 327-362 (421)
70 1dlj_A UDP-glucose dehydrogena 27.2 87 0.003 25.0 5.0 51 22-72 323-379 (402)
71 3aon_B V-type sodium ATPase su 27.2 56 0.0019 21.7 3.2 62 35-109 15-76 (115)
72 2vzf_A NADH-dependent FMN redu 26.2 1.2E+02 0.0043 21.2 5.2 78 27-107 19-110 (197)
73 2efe_B Small GTP-binding prote 26.1 1.4E+02 0.0049 19.6 8.1 62 51-115 68-130 (181)
74 2d00_A V-type ATP synthase sub 26.1 1.4E+02 0.0047 19.4 6.8 65 35-110 16-80 (109)
75 2l69_A Rossmann 2X3 fold prote 25.7 1.4E+02 0.0049 19.4 9.0 77 28-113 13-89 (134)
76 2fzv_A Putative arsenical resi 25.5 1.4E+02 0.0048 22.9 5.6 54 27-81 75-137 (279)
77 2ohh_A Type A flavoprotein FPR 25.2 2.4E+02 0.0081 21.8 7.5 74 15-94 258-332 (404)
78 1tu9_A Hypothetical protein PA 25.0 31 0.0011 22.9 1.6 44 107-150 84-128 (134)
79 1z0j_A RAB-22, RAS-related pro 24.7 1.5E+02 0.005 19.2 8.1 62 52-116 63-125 (170)
80 3rjm_B Caspase-2; caspase-2, c 24.6 19 0.00064 24.2 0.4 30 12-41 14-52 (117)
81 3uh0_A Threonyl-tRNA synthetas 24.2 97 0.0033 25.5 4.8 45 13-57 345-406 (460)
82 2fg5_A RAB-22B, RAS-related pr 24.2 1.7E+02 0.0058 19.8 8.4 62 52-116 80-142 (192)
83 3g79_A NDP-N-acetyl-D-galactos 24.1 61 0.0021 27.0 3.5 53 22-74 367-422 (478)
84 4hde_A SCO1/SENC family lipopr 23.6 98 0.0033 21.2 4.1 55 53-112 22-79 (170)
85 4f21_A Carboxylesterase/phosph 23.6 1.5E+02 0.0051 21.6 5.4 34 13-46 183-218 (246)
86 3ubc_A Hemoglobin-like flavopr 23.6 38 0.0013 22.3 1.8 43 107-149 84-128 (131)
87 3czq_A Putative polyphosphate 23.1 1.7E+02 0.006 22.8 5.8 99 15-114 86-204 (304)
88 5nul_A Flavodoxin; electron tr 23.0 1.6E+02 0.0054 19.0 5.9 45 27-81 13-59 (138)
89 2zki_A 199AA long hypothetical 22.7 1.9E+02 0.0066 19.9 5.7 63 27-94 18-95 (199)
90 2h1v_A Ferrochelatase; rossman 21.8 1.8E+02 0.0062 22.4 5.7 64 28-93 62-134 (310)
91 3dt5_A Uncharacterized protein 21.3 37 0.0013 22.3 1.3 54 59-112 18-75 (135)
92 1hc7_A Prolyl-tRNA synthetase; 20.9 1.3E+02 0.0044 24.9 4.9 38 12-49 286-327 (477)
93 2il1_A RAB12; G-protein, GDP, 20.8 2E+02 0.0069 19.4 6.9 62 52-116 83-145 (192)
94 3kbq_A Protein TA0487; structu 20.6 1.1E+02 0.0038 21.7 3.9 45 27-72 22-68 (172)
95 3ro3_B Minsc, peptide of prote 20.4 78 0.0027 14.7 1.9 14 133-146 7-20 (22)
96 2lpy_A Matrix protein P10; GAG 20.3 50 0.0017 22.5 1.9 19 27-45 8-26 (124)
97 4h0c_A Phospholipase/carboxyle 20.0 1.7E+02 0.0058 20.6 4.9 34 13-46 151-186 (210)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=1e-49 Score=303.68 Aligned_cols=151 Identities=41% Similarity=0.744 Sum_probs=139.1
Q ss_pred CCCCCCCCcccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCC-CCCCccchHHHHHHhHhcceEEEEeecCCcCChh
Q 039184 5 SSSHPRNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDND-LKRGDEISQSLVDAIEASSISIIIFSESYASSSW 83 (158)
Q Consensus 5 ~~s~~~~~~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~w 83 (158)
+|++++.++|||||||+++|.|..|+.+|+++|+++|+++|+|++ +.+|+.+.++|.++|++|+++|+|+|++|+.|.|
T Consensus 27 ~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~W 106 (204)
T 3ozi_A 27 PSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKW 106 (204)
T ss_dssp -------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHH
T ss_pred CcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcH
Confidence 556678899999999999998889999999999999999999988 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh-cCCceeeEEEeeCCcccccccCchHHHHHHHHhcc-hhHHHHHHHHHHHhhcccceeec
Q 039184 84 CLDELLRILECKTN-YGQIVIPVFYRVDPSHVRKQSGNFEDSFSKLEEQF-PDRMQTWRIALTEAANLSGFDSH 155 (158)
Q Consensus 84 c~~El~~a~~~~~~-~~~~iiPI~~~v~p~~v~~~~~~~~~~f~~~~~~~-~~~~~~W~~al~~i~~~~G~~~~ 155 (158)
|+.||..++++.++ ++.+||||||+|+|++|+.|+|.||++|.++.+.+ ++++++||.||++|++++||++.
T Consensus 107 Cl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~~~v~~Wr~AL~~va~lsG~~~~ 180 (204)
T 3ozi_A 107 CLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIG 180 (204)
T ss_dssp HHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCHHHHHHHHHHHHHHHTSCBEEEC
T ss_pred HHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhccCceecC
Confidence 99999999999764 57899999999999999999999999999999988 88999999999999999999885
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=1.3e-49 Score=297.97 Aligned_cols=146 Identities=45% Similarity=0.789 Sum_probs=126.7
Q ss_pred CCCcccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCC-CCCCccchHHHHHHhHhcceEEEEeecCCcCChhHHHHH
Q 039184 10 RNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDND-LKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDEL 88 (158)
Q Consensus 10 ~~~~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El 88 (158)
.+++|||||||+++|.|++|+.+|+++|+++|+++|+|++ +.+|+.+.++|.++|++|+++|+|+|++|++|+||+.||
T Consensus 5 ~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL 84 (176)
T 3jrn_A 5 TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDEL 84 (176)
T ss_dssp --CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHH
T ss_pred CCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHH
Confidence 3678999999999998889999999999999999999988 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCceeeEEEeeCCcccccccCchHHHHHHHHhcc-hhHHHHHHHHHHHhhcccceeec
Q 039184 89 LRILECKTNYGQIVIPVFYRVDPSHVRKQSGNFEDSFSKLEEQF-PDRMQTWRIALTEAANLSGFDSH 155 (158)
Q Consensus 89 ~~a~~~~~~~~~~iiPI~~~v~p~~v~~~~~~~~~~f~~~~~~~-~~~~~~W~~al~~i~~~~G~~~~ 155 (158)
..++++.++++.+||||||+|+|++|++|+|.||++|.++.++. .+++++||+||+++++++|+++.
T Consensus 85 ~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~~~~~~~~~Wr~AL~~va~~~G~~~~ 152 (176)
T 3jrn_A 85 VTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGDCSG 152 (176)
T ss_dssp HHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCCEECC
T ss_pred HHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhccCHHHHHHHHHHHHHHhcccceecC
Confidence 99999988889999999999999999999999999999999887 89999999999999999999873
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=100.00 E-value=8.1e-36 Score=219.04 Aligned_cols=136 Identities=20% Similarity=0.347 Sum_probs=118.8
Q ss_pred CCCCCcccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCC-CCCCccchHHHHHHhHhcceEEEEeecCCcCChhHHH
Q 039184 8 HPRNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDND-LKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLD 86 (158)
Q Consensus 8 ~~~~~~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~ 86 (158)
..+.++|||||||+++| ++.|+.+|+..|+++|+++|+|.+ +.+|+.|.++|.++|++|+++|+|+|++|++|.||+.
T Consensus 15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~ 93 (154)
T 3h16_A 15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK 93 (154)
T ss_dssp ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH
T ss_pred cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH
Confidence 35678999999999999 568999999999999999999998 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCceeeEEEeeCCcccccccCchHHHHHHHHhcchhHHHHHHHHHHHh
Q 039184 87 ELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGNFEDSFSKLEEQFPDRMQTWRIALTEA 146 (158)
Q Consensus 87 El~~a~~~~~~~~~~iiPI~~~v~p~~v~~~~~~~~~~f~~~~~~~~~~~~~W~~al~~i 146 (158)
|+..++++..+++.+||||||+++|++|+.+.|.||+.|...... +.+..+-+.|.++
T Consensus 94 El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~~--~~~~~ia~~l~~l 151 (154)
T 3h16_A 94 ELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTST--KSVDEIVADLMAI 151 (154)
T ss_dssp HHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETTT--SCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcCc--ccHHHHHHHHHHH
Confidence 999999887667789999999999999999999999988776654 3344444444443
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.96 E-value=2.2e-31 Score=194.10 Aligned_cols=132 Identities=17% Similarity=0.307 Sum_probs=95.9
Q ss_pred CCCCCCCcccEEEecccCcCchhHHHHHHHHHhc--CCceEEeeCC-CCCCccchHHHHHHhHhcceEEEEeecCCcCCh
Q 039184 6 SSHPRNNKYDVFLSFKGEDTRDNFTSHLYSALSQ--KGIETFIDND-LKRGDEISQSLVDAIEASSISIIIFSESYASSS 82 (158)
Q Consensus 6 ~s~~~~~~~DVFISys~~D~~~~fv~~L~~~L~~--~gi~v~~d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~ 82 (158)
.|+..++.|||||||+++| ..||.+|..+|++ .|+++|+|++ +.||+.+.++|.++|++|+++|+|+|++|++|.
T Consensus 3 ~~~r~~k~YDvFISy~~~D--~~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~ 80 (146)
T 3ub2_A 3 GSSRWSKDYDVCVCHSEED--LVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDP 80 (146)
T ss_dssp -CCTTSSSEEEEEECCGGG--HHHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCH
T ss_pred CCCCCCCcceEEEeCChhh--HHHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCH
Confidence 4567789999999999999 4689999999998 5999999999 999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhcCCceeeEEEeeCCcccccccCc--------hHHHHHHHHhcchhHHHHHHHHH
Q 039184 83 WCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGN--------FEDSFSKLEEQFPDRMQTWRIAL 143 (158)
Q Consensus 83 wc~~El~~a~~~~~~~~~~iiPI~~~v~p~~v~~~~~~--------~~~~f~~~~~~~~~~~~~W~~al 143 (158)
||..|+..|+++...+..+||||++++++++++...+. ....|.++ .+.+.+|++||
T Consensus 81 wc~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l----~~~v~~~~~~~ 145 (146)
T 3ub2_A 81 WCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQV----KEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHH----HHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHH----HHHHHHHHHhc
Confidence 99999999998753344478899999987777654432 23444444 46688998775
No 5
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.93 E-value=5.7e-27 Score=173.09 Aligned_cols=106 Identities=16% Similarity=0.255 Sum_probs=93.7
Q ss_pred CCCCCcccEEEecccCcCchhHHHHHHHHHhcC--CceEEeeCC-CCCCccchHHHHHHhH-hcceEEEEeecCCcCChh
Q 039184 8 HPRNNKYDVFLSFKGEDTRDNFTSHLYSALSQK--GIETFIDND-LKRGDEISQSLVDAIE-ASSISIIIFSESYASSSW 83 (158)
Q Consensus 8 ~~~~~~~DVFISys~~D~~~~fv~~L~~~L~~~--gi~v~~d~~-i~~G~~~~~~i~~~i~-~s~~~I~vlS~~~~~S~w 83 (158)
.+.++.|||||||+++| +.||.+|...|++. |+++|+|++ +.||+++.++|.++|+ +|+++|+|+|++|++|.|
T Consensus 11 ~~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~w 88 (160)
T 2js7_A 11 GHMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKE 88 (160)
T ss_dssp SCCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHH
T ss_pred CCCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHH
Confidence 44578999999999999 58999999999984 799999999 9999999999999999 799999999999999999
Q ss_pred HHHHHHHHHHHH-hhcCCceeeEEEeeCCcccc
Q 039184 84 CLDELLRILECK-TNYGQIVIPVFYRVDPSHVR 115 (158)
Q Consensus 84 c~~El~~a~~~~-~~~~~~iiPI~~~v~p~~v~ 115 (158)
|..|+..|+++. .+++.+||||+|+.-+.+++
T Consensus 89 c~~El~~a~~~~~~~~~~~vIpV~~~~~~~~lp 121 (160)
T 2js7_A 89 CDFQTKFALSLSPGAHQKRLIPIKYKAMKKEFP 121 (160)
T ss_dssp HHHHHHHHHHHCTTHHHHTEEEEESSCCCCCCC
T ss_pred HHHHHHHHHHHHHccCCCEEEEEEEcccchhhH
Confidence 999999999874 44567999999976544444
No 6
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.93 E-value=3.7e-27 Score=172.15 Aligned_cols=104 Identities=20% Similarity=0.353 Sum_probs=92.3
Q ss_pred CCCcccEEEecccCcCchhHHHH-HHHHHhcC--CceEEeeCC-CCCCccchHHHHHHhHhcceEEEEeecCCcCChhHH
Q 039184 10 RNNKYDVFLSFKGEDTRDNFTSH-LYSALSQK--GIETFIDND-LKRGDEISQSLVDAIEASSISIIIFSESYASSSWCL 85 (158)
Q Consensus 10 ~~~~~DVFISys~~D~~~~fv~~-L~~~L~~~--gi~v~~d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~ 85 (158)
.++.|||||||+++| ..||.+ |...|++. |+++|+|++ +.||+++.++|.++|++|+++|+|+||+|++|.||.
T Consensus 2 ~~~~yDvFiSy~~~D--~~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERD--AYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGG--HHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCccc--HHHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 467899999999999 479986 99999986 999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HhhcCCceeeEEEe-eCCcccc
Q 039184 86 DELLRILEC-KTNYGQIVIPVFYR-VDPSHVR 115 (158)
Q Consensus 86 ~El~~a~~~-~~~~~~~iiPI~~~-v~p~~v~ 115 (158)
.|+..|+++ ..+++.+||||+|+ +++..++
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~p 111 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEPIEKKAIP 111 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSCCCTTTSC
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCChhhcC
Confidence 999999864 34567789999984 5555554
No 7
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.92 E-value=1.4e-26 Score=173.77 Aligned_cols=107 Identities=21% Similarity=0.369 Sum_probs=89.2
Q ss_pred CCCCCCcccEEEecccCcCchhHHHH-HHHHHhc--CCceEEeeCC-CCCCccchHHHHHHhHhcceEEEEeecCCcCCh
Q 039184 7 SHPRNNKYDVFLSFKGEDTRDNFTSH-LYSALSQ--KGIETFIDND-LKRGDEISQSLVDAIEASSISIIIFSESYASSS 82 (158)
Q Consensus 7 s~~~~~~~DVFISys~~D~~~~fv~~-L~~~L~~--~gi~v~~d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~ 82 (158)
....++.|||||||+++| ..||.. |...|++ .|+++|+|++ +.||+++.++|.++|++|+++|+|+||+|++|.
T Consensus 29 ~~~~~~~yDvFISys~~D--~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~ 106 (178)
T 2j67_A 29 QLKRNVRFHAFISYSEHD--SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNE 106 (178)
T ss_dssp -CCCSCCEEEEEECCGGG--HHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHT
T ss_pred ccCCCccceEEEECCCCC--HHHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccc
Confidence 345788999999999999 489974 9999998 8999999999 999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHH-hhcCCceeeEEEe-eCCcccc
Q 039184 83 WCLDELLRILECK-TNYGQIVIPVFYR-VDPSHVR 115 (158)
Q Consensus 83 wc~~El~~a~~~~-~~~~~~iiPI~~~-v~p~~v~ 115 (158)
||..|+..|+++. .+++.+||||+|+ +.+.+++
T Consensus 107 wc~~El~~a~~~~~~~~~~~vIpV~~~~i~~~~lp 141 (178)
T 2j67_A 107 WCHYEFYFAHHNLFHENSDHIILILLEPIPFYCIP 141 (178)
T ss_dssp GGGTHHHHTTCC-------CEEEEESSCCCGGGSC
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEEEecCCChHHCC
Confidence 9999999998653 4567799999985 4444444
No 8
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.92 E-value=1.3e-25 Score=165.62 Aligned_cols=101 Identities=21% Similarity=0.324 Sum_probs=89.1
Q ss_pred CcccEEEecccCcC---------chhHHHHHHH-HHh-cCCceEEeeCC-CCCCccchHHHHHHhHhcceEEEEeecCCc
Q 039184 12 NKYDVFLSFKGEDT---------RDNFTSHLYS-ALS-QKGIETFIDND-LKRGDEISQSLVDAIEASSISIIIFSESYA 79 (158)
Q Consensus 12 ~~~DVFISys~~D~---------~~~fv~~L~~-~L~-~~gi~v~~d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~ 79 (158)
+.|||||||+++|. ++.||.+|.. .|+ +.|+++|+|++ +.||+.+.++|.++|++|+.+|+|+|++|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 47999999999995 3678888665 699 79999999999 999999999999999999999999999997
Q ss_pred -CChhHHHHHHHHHHHH-hhcCCceeeEEEeeCCc
Q 039184 80 -SSSWCLDELLRILECK-TNYGQIVIPVFYRVDPS 112 (158)
Q Consensus 80 -~S~wc~~El~~a~~~~-~~~~~~iiPI~~~v~p~ 112 (158)
+|.||..|+..|+++. .+++.+||||+++..+.
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~ 115 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELRG 115 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence 9999999999999875 55678999999765443
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.80 E-value=2.7e-20 Score=166.12 Aligned_cols=101 Identities=20% Similarity=0.350 Sum_probs=90.8
Q ss_pred CCCCcccEEEecccCcCchhHH-HHHHHHHhc-----CCceEEeeCC-CCCCccchHHHHHHhHhcceEEEEeecCCcCC
Q 039184 9 PRNNKYDVFLSFKGEDTRDNFT-SHLYSALSQ-----KGIETFIDND-LKRGDEISQSLVDAIEASSISIIIFSESYASS 81 (158)
Q Consensus 9 ~~~~~~DVFISys~~D~~~~fv-~~L~~~L~~-----~gi~v~~d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S 81 (158)
...+.|||||||+++|. .|| .+|...|++ .|+++|++++ +.||+.+.++|.++|++||.+|+|+|++|++|
T Consensus 666 ~~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s 743 (844)
T 3j0a_A 666 PDMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRD 743 (844)
T ss_dssp SSCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHH
T ss_pred ccceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccC
Confidence 45789999999999993 566 889999985 5899999999 99999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHH-hhcCCceeeEEEeeCC
Q 039184 82 SWCLDELLRILECK-TNYGQIVIPVFYRVDP 111 (158)
Q Consensus 82 ~wc~~El~~a~~~~-~~~~~~iiPI~~~v~p 111 (158)
+||..|+..|+++. .+++.+||||+|+..|
T Consensus 744 ~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~ 774 (844)
T 3j0a_A 744 GWCLEAFSYAQGRCLSDLNSALIMVVVGSLS 774 (844)
T ss_dssp TSTTHHHHHHHSCCCCSSCTTEEEEESSCCC
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEeccCC
Confidence 99999999998774 5667899999996544
No 10
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=98.52 E-value=1.3e-07 Score=65.28 Aligned_cols=72 Identities=13% Similarity=0.061 Sum_probs=54.7
Q ss_pred CcccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHH
Q 039184 12 NKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRI 91 (158)
Q Consensus 12 ~~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a 91 (158)
.+|.+||||+.+| . ...|...|.+.|+..- | +.|+.|+++|++.++...+|+||..|+..|
T Consensus 3 ~~~~lFISh~~~d-~---~~~L~~~l~~~~f~~~-~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A 63 (111)
T 1eiw_A 3 AEIRLYITEGEVE-D---YRVFLERLEQSGLEWR-P--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA 63 (111)
T ss_dssp CCEEEEECCCCSH-H---HHHHHHHHHHHCSCEE-E--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred ceEEEEEecccHh-H---HHHHHHHHhCCCCeee-c--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence 4699999999998 2 4445555544455443 2 678999999999999999999999999999
Q ss_pred HHHHhhcCCceeeEE
Q 039184 92 LECKTNYGQIVIPVF 106 (158)
Q Consensus 92 ~~~~~~~~~~iiPI~ 106 (158)
.+ .+.+||-|.
T Consensus 64 ~~----~gkpIigV~ 74 (111)
T 1eiw_A 64 RK----SSKPIITVR 74 (111)
T ss_dssp TT----TTCCEEEEC
T ss_pred HH----cCCCEEEEE
Confidence 54 344666665
No 11
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=97.36 E-value=0.00064 Score=50.45 Aligned_cols=83 Identities=17% Similarity=0.104 Sum_probs=61.4
Q ss_pred ccCcCchhHHHHHHHHHhcCCceEEeeCC-CC-------C-CccchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHH
Q 039184 21 KGEDTRDNFTSHLYSALSQKGIETFIDND-LK-------R-GDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRI 91 (158)
Q Consensus 21 s~~D~~~~fv~~L~~~L~~~gi~v~~d~~-i~-------~-G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a 91 (158)
+.+| ......|..--.+...--|.|-. .. . -..|...|.+.|..|+.+|+++|++..+|.|...|++.|
T Consensus 27 a~~D--i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~A 104 (189)
T 3hyn_A 27 STHD--FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYG 104 (189)
T ss_dssp GSTT--HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred ccch--HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHH
Confidence 4566 45667776666665555556653 31 2 235778899999999999999999999999999999999
Q ss_pred HHHHhhcCCceeeEEEe
Q 039184 92 LECKTNYGQIVIPVFYR 108 (158)
Q Consensus 92 ~~~~~~~~~~iiPI~~~ 108 (158)
++ +.+.+||-|..+
T Consensus 105 i~---~~~~PII~Vy~~ 118 (189)
T 3hyn_A 105 IG---TKGLPVIVIYPD 118 (189)
T ss_dssp TT---TTCCCEEEEETT
T ss_pred HH---hcCCcEEEEECC
Confidence 72 245688888754
No 12
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=95.73 E-value=0.043 Score=39.73 Aligned_cols=70 Identities=13% Similarity=0.100 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHhcCCceEEeeCC--CCCCccchHHHHHHhHhcceEEEEeec--CCcCChhHHHHHHHHHHHHh
Q 039184 27 DNFTSHLYSALSQKGIETFIDND--LKRGDEISQSLVDAIEASSISIIIFSE--SYASSSWCLDELLRILECKT 96 (158)
Q Consensus 27 ~~fv~~L~~~L~~~gi~v~~d~~--i~~G~~~~~~i~~~i~~s~~~I~vlS~--~~~~S~wc~~El~~a~~~~~ 96 (158)
..+...+.+.|++.|+.|++..+ ...+..+.+.=.++|++|+++|++++| .-..+.-+..|+..|....+
T Consensus 26 ~~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgK 99 (161)
T 2f62_A 26 ASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNK 99 (161)
T ss_dssp HHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCC
Confidence 47889999999999999988554 222223333337899999999999997 44456678899999987654
No 13
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=92.37 E-value=0.9 Score=32.53 Aligned_cols=82 Identities=12% Similarity=0.101 Sum_probs=54.3
Q ss_pred CCcccEEEecccC-cC-chhHHHHHHHHHhcCCceEEeeCCCCCCc-----c-------chHHHHHHhHhcceEEEEeec
Q 039184 11 NNKYDVFLSFKGE-DT-RDNFTSHLYSALSQKGIETFIDNDLKRGD-----E-------ISQSLVDAIEASSISIIIFSE 76 (158)
Q Consensus 11 ~~~~DVFISys~~-D~-~~~fv~~L~~~L~~~gi~v~~d~~i~~G~-----~-------~~~~i~~~i~~s~~~I~vlS~ 76 (158)
++...|||+=.-. +. .......+.+.|++.| .|+.+....|.. . +...-.+.|++|+++|++++
T Consensus 9 ~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~~- 86 (165)
T 2khz_A 9 QAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVT- 86 (165)
T ss_dssp CCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEECS-
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEECC-
Confidence 3445699984322 11 1225589999999999 886554332221 1 11222478999999999997
Q ss_pred CCcCChhHHHHHHHHHHHHh
Q 039184 77 SYASSSWCLDELLRILECKT 96 (158)
Q Consensus 77 ~~~~S~wc~~El~~a~~~~~ 96 (158)
..+.-+..|+..|....+
T Consensus 87 --~~d~Gt~~EiGyA~algK 104 (165)
T 2khz_A 87 --QPSLGVGYELGRAVALGK 104 (165)
T ss_dssp --SCCHHHHHHHHHHHHTCS
T ss_pred --CCCCCHHHHHHHHHHCCC
Confidence 567888999999976544
No 14
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=92.11 E-value=0.71 Score=33.29 Aligned_cols=69 Identities=10% Similarity=0.112 Sum_probs=50.5
Q ss_pred hhHHHHHHHHHhcC--CceEEeeCC-CC----CCccchHHH----HHHhHhcceEEEEeecCCcCChhHHHHHHHHHHHH
Q 039184 27 DNFTSHLYSALSQK--GIETFIDND-LK----RGDEISQSL----VDAIEASSISIIIFSESYASSSWCLDELLRILECK 95 (158)
Q Consensus 27 ~~fv~~L~~~L~~~--gi~v~~d~~-i~----~G~~~~~~i----~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~~~~ 95 (158)
.++..++.+.|+.+ |+.+|...+ -. ++..+...| .++|++|+++|.++. ....+..+..|+..|....
T Consensus 19 ~~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld-g~~~D~Gt~~EiG~A~a~g 97 (162)
T 3ehd_A 19 LRYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD-GPTIDAGVASEIGVAYAKG 97 (162)
T ss_dssp HHHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC-SSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC-CCCCCCCHHHHHHHHHHCC
Confidence 46788899999875 899988655 22 223344344 467999999999994 4456788999999998754
Q ss_pred h
Q 039184 96 T 96 (158)
Q Consensus 96 ~ 96 (158)
+
T Consensus 98 k 98 (162)
T 3ehd_A 98 I 98 (162)
T ss_dssp C
T ss_pred C
Confidence 3
No 15
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=90.73 E-value=1.4 Score=31.38 Aligned_cols=77 Identities=14% Similarity=0.199 Sum_probs=51.5
Q ss_pred cEEEec--ccCcCchhHHHHHHHHHhcCCceEEeeCCCC------CCc-------cchHHHHHHhHhcceEEEEeecCCc
Q 039184 15 DVFLSF--KGEDTRDNFTSHLYSALSQKGIETFIDNDLK------RGD-------EISQSLVDAIEASSISIIIFSESYA 79 (158)
Q Consensus 15 DVFISy--s~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~------~G~-------~~~~~i~~~i~~s~~~I~vlS~~~~ 79 (158)
-|||+= .+.+...++...+.+.|++.| .|+. ..+. .|+ .+.+.-.++|++|+++|++++ .
T Consensus 4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~-~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~ 78 (152)
T 4fyk_A 4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLT-EHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---Q 78 (152)
T ss_dssp EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECC-CC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---S
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccc-cccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---C
Confidence 366652 232223478899999999999 6753 2221 121 134445588999999999998 6
Q ss_pred CChhHHHHHHHHHHHHh
Q 039184 80 SSSWCLDELLRILECKT 96 (158)
Q Consensus 80 ~S~wc~~El~~a~~~~~ 96 (158)
.|.-...|+..|....+
T Consensus 79 ~d~Gt~~EiG~A~algk 95 (152)
T 4fyk_A 79 PSLGVGYELGRAVALGK 95 (152)
T ss_dssp CCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHcCC
Confidence 67788999999987543
No 16
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=89.28 E-value=1.6 Score=31.51 Aligned_cols=79 Identities=9% Similarity=0.135 Sum_probs=54.5
Q ss_pred cEEEe---cccCcCchhHHHHHHHHHhcC--CceEEeeCC--C--------CCC----c----cchHHHHHHhHhcceEE
Q 039184 15 DVFLS---FKGEDTRDNFTSHLYSALSQK--GIETFIDND--L--------KRG----D----EISQSLVDAIEASSISI 71 (158)
Q Consensus 15 DVFIS---ys~~D~~~~fv~~L~~~L~~~--gi~v~~d~~--i--------~~G----~----~~~~~i~~~i~~s~~~I 71 (158)
.||+. |+..+ ..+..++.+.|++. |+.+|...+ . ..| . .+.+.=.++|++|+++|
T Consensus 9 kIYLAGP~F~~~~--~~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vV 86 (167)
T 1s2d_A 9 KIYLGSPFYSDAQ--RERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGV 86 (167)
T ss_dssp EEEEECCCSSHHH--HHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEE
T ss_pred EEEEECCCCCHHH--HHHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEEE
Confidence 47776 33332 46889999999999 889987544 2 111 1 12233347899999999
Q ss_pred EEeecCCcCChhHHHHHHHHHHHHh
Q 039184 72 IIFSESYASSSWCLDELLRILECKT 96 (158)
Q Consensus 72 ~vlS~~~~~S~wc~~El~~a~~~~~ 96 (158)
+++.+. ..+.-+..|+..|....+
T Consensus 87 A~ldg~-~~D~GTa~EiGyA~algK 110 (167)
T 1s2d_A 87 FLYDMD-QLDDGSAFXIGFMRAMHK 110 (167)
T ss_dssp EEEESS-SCCHHHHHHHHHHHHTTC
T ss_pred EECCCC-CCCCCceeehhhHhhCCC
Confidence 999863 346778899999987644
No 17
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=77.18 E-value=5 Score=27.84 Aligned_cols=62 Identities=13% Similarity=0.162 Sum_probs=41.0
Q ss_pred EEEecccCcCchhHHHHHHHHHhcCCceEEee-------------CC-CC---CC-c-cchHHHHHHhHhcceEEEEeec
Q 039184 16 VFLSFKGEDTRDNFTSHLYSALSQKGIETFID-------------ND-LK---RG-D-EISQSLVDAIEASSISIIIFSE 76 (158)
Q Consensus 16 VFISys~~D~~~~fv~~L~~~L~~~gi~v~~d-------------~~-i~---~G-~-~~~~~i~~~i~~s~~~I~vlS~ 76 (158)
||||.+..| +.-+..+...|...|++++-- -. +. -| + .-.++|.+.|.+-++-++|.+|
T Consensus 27 vliSv~d~d--K~~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~ 104 (143)
T 2yvq_A 27 ILIGIQQSF--RPRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLP 104 (143)
T ss_dssp EEEECCGGG--HHHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECC
T ss_pred EEEEecccc--hHHHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECC
Confidence 999998877 344556778888889887621 11 11 12 1 0004688889998998888888
Q ss_pred CCc
Q 039184 77 SYA 79 (158)
Q Consensus 77 ~~~ 79 (158)
+-.
T Consensus 105 ~~~ 107 (143)
T 2yvq_A 105 NNN 107 (143)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 18
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=73.59 E-value=5 Score=28.44 Aligned_cols=79 Identities=11% Similarity=0.150 Sum_probs=52.4
Q ss_pred cEEEe---cccCcCchhHHHHHHHHHhcCCc----eEEeeCC--C--------CC---Cc----cchHHHHHHhHhcceE
Q 039184 15 DVFLS---FKGEDTRDNFTSHLYSALSQKGI----ETFIDND--L--------KR---GD----EISQSLVDAIEASSIS 70 (158)
Q Consensus 15 DVFIS---ys~~D~~~~fv~~L~~~L~~~gi----~v~~d~~--i--------~~---G~----~~~~~i~~~i~~s~~~ 70 (158)
.||++ |+..+ .....++.+.|+..|. .+|...+ . .. +. .+.+.=.++|++|+++
T Consensus 5 kIYLAGP~F~~~q--~~~~~~~~~~L~~~g~v~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~v 82 (157)
T 1f8y_A 5 TIYFGAGWFTDRQ--NKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDIM 82 (157)
T ss_dssp CEEEECCCSSHHH--HHHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSSEE
T ss_pred EEEEECCCCCHHH--HHHHHHHHHHHHHCCCccccceECcccccccccccccccccccChHHHHHHHHHhHHHHHhCCEE
Confidence 36666 33332 4678999999999985 6766543 2 11 11 1223334789999999
Q ss_pred EEEeecCCcCChhHHHHHHHHHHHHh
Q 039184 71 IIIFSESYASSSWCLDELLRILECKT 96 (158)
Q Consensus 71 I~vlS~~~~~S~wc~~El~~a~~~~~ 96 (158)
|.++.. -..+.-+..|+..|....+
T Consensus 83 vA~ldg-~~~D~GT~~EiGyA~A~gk 107 (157)
T 1f8y_A 83 LGVYIP-DEEDVGLGMELGYALSQGK 107 (157)
T ss_dssp EEECCG-GGCCHHHHHHHHHHHHTTC
T ss_pred EEEcCC-CCCCccHHHHHHHHHHCCC
Confidence 999973 2346678899999987654
No 19
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=61.48 E-value=37 Score=23.38 Aligned_cols=50 Identities=14% Similarity=0.259 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeecCCcC
Q 039184 27 DNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYAS 80 (158)
Q Consensus 27 ~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~ 80 (158)
+..+..|.+.|+..|+.+-+ +...+.-.+.+...+.+++ .|++-||.|..
T Consensus 15 ~~~A~~ia~~l~~~g~~v~~---~~~~~~~~~~~~~~~~~~d-~ii~Gspty~g 64 (161)
T 3hly_A 15 DRLSQAIGRGLVKTGVAVEM---VDLRAVDPQELIEAVSSAR-GIVLGTPPSQP 64 (161)
T ss_dssp HHHHHHHHHHHHHTTCCEEE---EETTTCCHHHHHHHHHHCS-EEEEECCBSSC
T ss_pred HHHHHHHHHHHHhCCCeEEE---EECCCCCHHHHHHHHHhCC-EEEEEcCCcCC
Confidence 57999999999999987633 1222222345556677788 45677888864
No 20
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=60.22 E-value=7.8 Score=23.90 Aligned_cols=38 Identities=11% Similarity=0.319 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCceEEeeCC-CC---CCccchHHHHHHhHhc
Q 039184 30 TSHLYSALSQKGIETFIDND-LK---RGDEISQSLVDAIEAS 67 (158)
Q Consensus 30 v~~L~~~L~~~gi~v~~d~~-i~---~G~~~~~~i~~~i~~s 67 (158)
+..|...|+++|+.+|.+.+ +. |-..+.+++...+...
T Consensus 7 ~~~ll~~l~~~gi~l~~eg~kLr~~ap~g~l~~~l~~~l~~~ 48 (78)
T 2jug_A 7 AGALLAHAASLGVRLWVEGERLRFQAPPGVMTPELQSRLGGA 48 (78)
T ss_dssp HHHHHHHHHHHTCEEEEETTEEEEECCTTTTCHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCEEEEECCEeeeecCccccCHHHHHHHHHH
Confidence 34566889999999999987 43 4445666776666653
No 21
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=56.92 E-value=44 Score=22.89 Aligned_cols=57 Identities=16% Similarity=0.208 Sum_probs=37.4
Q ss_pred ccE-EEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhH-hcceEEEE
Q 039184 14 YDV-FLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIE-ASSISIII 73 (158)
Q Consensus 14 ~DV-FISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~-~s~~~I~v 73 (158)
.|| .|.-+.+. ..++..+...|+..|++|=+|.. .+++.+...|.++-. +..++|+|
T Consensus 9 ~Qv~IlpVs~~~--~~YA~~V~~~L~~~GiRvevD~~-r~~e~Lg~kIR~a~~~kvPy~lVV 67 (130)
T 1v95_A 9 VDCSVIVVNKQT--KDYAESVGRKVRDLGMVVDLIFL-NTEVSLSQALEDVSRGGSPFAIVI 67 (130)
T ss_dssp CTEEEEESSSGG--GHHHHHHHHHHHTTTCCEEEEEC-TTSSCHHHHHHHHHHHTCSEEEEE
T ss_pred CeEEEEEeCcch--HHHHHHHHHHHHHCCCEEEEecC-CCCCcHHHHHHHHHHcCCCEEEEE
Confidence 444 34444333 58999999999999999988651 236667666665443 45555444
No 22
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=53.56 E-value=21 Score=28.61 Aligned_cols=58 Identities=14% Similarity=0.196 Sum_probs=38.8
Q ss_pred CcccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhH-hcceEEEE
Q 039184 12 NKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIE-ASSISIII 73 (158)
Q Consensus 12 ~~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~-~s~~~I~v 73 (158)
..+||+|---+++ ....+..|+..|++.|++|-+|.+ +.++...+..+-. +...+|+|
T Consensus 297 ap~~v~vi~~~~~-~~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~k~~~A~~~g~p~~iii 355 (401)
T 1evl_A 297 APVQVVIMNITDS-QSEYVNELTQKLSNAGIRVKADLR---NEKIGFKIREHTLRRVPYMLVC 355 (401)
T ss_dssp CSSCEEEEESSGG-GHHHHHHHHHHHHHTTCCEEEECC---SSCHHHHHHHHHHTTCSEEEEE
T ss_pred CCeEEEEEecCHH-HHHHHHHHHHHHHHCCCEEEEECC---CCCHHHHHHHHHhcCCCEEEEE
Confidence 3488988765544 357889999999999999999875 2344445544443 44544443
No 23
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=53.41 E-value=35 Score=22.86 Aligned_cols=37 Identities=16% Similarity=0.130 Sum_probs=19.2
Q ss_pred hHHHHHHHHHhcCCceEEeeCC-CCCCccchHHHHHHhH
Q 039184 28 NFTSHLYSALSQKGIETFIDND-LKRGDEISQSLVDAIE 65 (158)
Q Consensus 28 ~fv~~L~~~L~~~gi~v~~d~~-i~~G~~~~~~i~~~i~ 65 (158)
.+...+.+.+++..-.+++-.- + +.+.+.+.|.++.+
T Consensus 14 ~~~~~~~~~i~~A~~~I~i~~~~~-~~~~i~~aL~~a~~ 51 (155)
T 1byr_A 14 SARVLVLSAIDSAKTSIRMMAYSF-TAPDIMKALVAAKK 51 (155)
T ss_dssp HHHHHHHHHHHHCSSEEEEEESSB-CCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhEEEEEEEEe-CCHHHHHHHHHHHH
Confidence 3455666666655545555434 4 34445555555544
No 24
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=53.19 E-value=23 Score=28.74 Aligned_cols=57 Identities=16% Similarity=0.263 Sum_probs=37.6
Q ss_pred cccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhH-hcceEEEE
Q 039184 13 KYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIE-ASSISIII 73 (158)
Q Consensus 13 ~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~-~s~~~I~v 73 (158)
.+||+|..-+++. ...+..++..|++.|++|-+|.+ +..+...+..+-. ++...|+|
T Consensus 332 p~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~~~~~a~~~g~~~~iii 389 (434)
T 1wu7_A 332 KKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIM---ERGLSAQLKYASAIGADFAVIF 389 (434)
T ss_dssp SCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCS---CCCHHHHHHHHHHTTCSEEEEE
T ss_pred CCcEEEEEcChHH-HHHHHHHHHHHHHCCCeEEEecC---CCCHHHHHHHHHHCCCCEEEEE
Confidence 4899876555443 46789999999999999998764 2344444444333 55544444
No 25
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=50.12 E-value=49 Score=21.39 Aligned_cols=59 Identities=10% Similarity=0.107 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHhcCCceEEe-eCC-CCCCccchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHHHHHH
Q 039184 27 DNFTSHLYSALSQKGIETFI-DND-LKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRILECK 95 (158)
Q Consensus 27 ~~fv~~L~~~L~~~gi~v~~-d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~~~~ 95 (158)
+.+++.+.+.|+..|+.+-+ +-. .. ...+.+++ .|++.+|.|..+.-...++..++++.
T Consensus 14 ~~~a~~i~~~l~~~g~~v~~~~~~~~~---------~~~l~~~d-~vi~g~p~y~~~~~~~~~~~~fl~~l 74 (137)
T 2fz5_A 14 EAMANEIEAAVKAAGADVESVRFEDTN---------VDDVASKD-VILLGCPAMGSEELEDSVVEPFFTDL 74 (137)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEETTSCC---------HHHHHTCS-EEEEECCCBTTTBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcccCC---------HHHHhcCC-EEEEEccccCCCCCCHHHHHHHHHHh
Confidence 57899999999988877633 222 21 13456666 55667888876543332466666553
No 26
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=49.21 E-value=34 Score=28.16 Aligned_cols=62 Identities=10% Similarity=0.101 Sum_probs=40.7
Q ss_pred CCcccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhH-hcceEEEEeecC
Q 039184 11 NNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIE-ASSISIIIFSES 77 (158)
Q Consensus 11 ~~~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~-~s~~~I~vlS~~ 77 (158)
...+||+|..-+++. ...+..+...|+++|++|-+|.. +.++...+..+-. ++. .++++.++
T Consensus 369 ~~p~~V~Vi~~~~~~-~~~A~~la~~LR~~Gi~ve~d~~---~~sl~~q~k~A~~~g~p-~~iiiG~~ 431 (465)
T 3net_A 369 PTPAQVVVVNMQDEL-MPTYLKVSQQLRQAGLNVITNFE---KRQLGKQFQAADKQGIR-FCVIIGAD 431 (465)
T ss_dssp SCSCCEEECCSCGGG-HHHHHHHHHHHHHTTCCEEECCS---CCCHHHHHHHHHHHTCC-EEEECCHH
T ss_pred CCCCeEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHcCCC-EEEEECch
Confidence 345899987655543 46789999999999999998765 2344445554444 344 45555543
No 27
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=47.88 E-value=25 Score=28.94 Aligned_cols=45 Identities=22% Similarity=0.426 Sum_probs=32.0
Q ss_pred cccEEEeccc--CcCchhHHHHHHHHHhcCCceEEeeCC-CCCCccch
Q 039184 13 KYDVFLSFKG--EDTRDNFTSHLYSALSQKGIETFIDND-LKRGDEIS 57 (158)
Q Consensus 13 ~~DVFISys~--~D~~~~fv~~L~~~L~~~gi~v~~d~~-i~~G~~~~ 57 (158)
.+||+|---. .+.....+..|+..|++.|++|-+|.+ -.+|..+.
T Consensus 365 p~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~~~g~k~~ 412 (458)
T 2i4l_A 365 PFRVTILNLKQGDAATDAACDQLYRELSAKGVDVLYDDTDQRAGAKFA 412 (458)
T ss_dssp SCSEEEEESSTTCHHHHHHHHHHHHHHHHTTCCEEEECSSCCHHHHHH
T ss_pred CceEEEEecCCCCHHHHHHHHHHHHHHhhCCCEEEEECCCCCHHHHHH
Confidence 4788876432 222357889999999999999999986 44555443
No 28
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=47.54 E-value=52 Score=26.63 Aligned_cols=59 Identities=15% Similarity=0.116 Sum_probs=38.4
Q ss_pred CCcccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhH-hcceEEE
Q 039184 11 NNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIE-ASSISII 72 (158)
Q Consensus 11 ~~~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~-~s~~~I~ 72 (158)
....||++...+++. ...+..|+..|+++|++|-+|.. .+..+...+..|-. +++.+|+
T Consensus 364 ~~~~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~~--~~~~l~~q~k~A~~~g~~~~vi 423 (464)
T 4g84_A 364 TTETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLYK--KNPKLLNQLQYCEEAGIPLVAI 423 (464)
T ss_dssp SCCCCEEEECSSSSC-HHHHHHHHHHHHHTTCCEECCSC--SSCCHHHHHHHHHHHTCCEEEE
T ss_pred cccceEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEeC--CCCCHHHHHHHHHHCCCCEEEE
Confidence 345789998876654 45678999999999999976542 22344445554433 4554443
No 29
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=47.50 E-value=21 Score=28.72 Aligned_cols=59 Identities=17% Similarity=0.376 Sum_probs=38.8
Q ss_pred CCcccEEEecccCcCchhHHHHHHHHHhcC--CceEEeeCCCCCCccchHHHHHHh-HhcceEEEE
Q 039184 11 NNKYDVFLSFKGEDTRDNFTSHLYSALSQK--GIETFIDNDLKRGDEISQSLVDAI-EASSISIII 73 (158)
Q Consensus 11 ~~~~DVFISys~~D~~~~fv~~L~~~L~~~--gi~v~~d~~i~~G~~~~~~i~~~i-~~s~~~I~v 73 (158)
...+||+|..-+++. ...+..|+..|++. |++|-+|.+ +.++...+..+- .++..+|+|
T Consensus 325 ~~p~~v~i~~~~~~~-~~~a~~l~~~Lr~~~~Gi~v~~d~~---~~~~~~~~~~a~~~g~p~~iii 386 (423)
T 1htt_A 325 DPVVDIYLVASGADT-QSAAMALAERLRDELPGVKLMTNHG---GGNFKKQFARADKWGARVAVVL 386 (423)
T ss_dssp CCSCSEEEEECSTTH-HHHHHHHHHHHHHHSTTCCEEECCS---CCCHHHHHHHHHHHTCSEEEEE
T ss_pred CCCCcEEEEEcCHHH-HHHHHHHHHHHHcCCCCcEEEEeCC---CCCHHHHHHHHHHcCCCEEEEE
Confidence 345799888765543 56789999999999 999998865 233444444443 345554444
No 30
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=47.44 E-value=62 Score=23.57 Aligned_cols=54 Identities=11% Similarity=0.080 Sum_probs=36.6
Q ss_pred EEEecccCc-CchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEE
Q 039184 16 VFLSFKGED-TRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISII 72 (158)
Q Consensus 16 VFISys~~D-~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~ 72 (158)
+||-|...+ ..+.++..+.++|++.|+.+-.- ++.. .-.+++.+.|++++.+++
T Consensus 31 ~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~-~i~~--~~~~~~~~~l~~ad~I~l 85 (206)
T 3l4e_A 31 TFIPTASTVEEVTFYVEAGKKALESLGLLVEEL-DIAT--ESLGEITTKLRKNDFIYV 85 (206)
T ss_dssp EEECGGGGGCSCCHHHHHHHHHHHHTTCEEEEC-CTTT--SCHHHHHHHHHHSSEEEE
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEE-EecC--CChHHHHHHHHhCCEEEE
Confidence 599997652 12468888999999999986541 1222 223466678899997654
No 31
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=45.38 E-value=70 Score=26.55 Aligned_cols=60 Identities=17% Similarity=0.136 Sum_probs=38.3
Q ss_pred CCcccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhH-hcceEEEE
Q 039184 11 NNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIE-ASSISIII 73 (158)
Q Consensus 11 ~~~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~-~s~~~I~v 73 (158)
....||||...+++. ...+..|...|++.|+++-+|.. .+..+...+..|-. +.+.+|+|
T Consensus 417 ~~~~~V~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~~--~~~~l~~q~k~A~~~g~~~~vii 477 (517)
T 4g85_A 417 TTETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLYK--KNPKLLNQLQYCEEAGIPLVAII 477 (517)
T ss_dssp SCCCCEEEEESSSSC-HHHHHHHHHHHHHTTCCEEECSS--SSCCHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCEEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEeC--CCCCHHHHHHHHHHCCCCEEEEE
Confidence 345799988765553 45688999999999999977542 22344445554444 34444443
No 32
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=44.77 E-value=73 Score=21.83 Aligned_cols=62 Identities=15% Similarity=0.224 Sum_probs=38.7
Q ss_pred EEEecccCc-CchhHHHHHHHHHhcCCceEEeeCCCCCCcc-chHHHHHHhHhcceEEEEeecCCcCC
Q 039184 16 VFLSFKGED-TRDNFTSHLYSALSQKGIETFIDNDLKRGDE-ISQSLVDAIEASSISIIIFSESYASS 81 (158)
Q Consensus 16 VFISys~~D-~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~-~~~~i~~~i~~s~~~I~vlS~~~~~S 81 (158)
|.|-|.+.- .-+..+..+.+.|+..|+.+-+ +...+. -.+.+...+.+++ .|++-||.|...
T Consensus 7 v~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~---~~~~~~~~~~~~~~~~~~~d-~ii~Gspty~g~ 70 (159)
T 3fni_A 7 IGVFYVSEYGYSDRLAQAIINGITKTGVGVDV---VDLGAAVDLQELRELVGRCT-GLVIGMSPAASA 70 (159)
T ss_dssp EEEEECTTSTTHHHHHHHHHHHHHHTTCEEEE---EESSSCCCHHHHHHHHHTEE-EEEEECCBTTSH
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHCCCeEEE---EECcCcCCHHHHHHHHHhCC-EEEEEcCcCCCC
Confidence 555554321 2267899999999999987643 222222 2345556677777 556678998743
No 33
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=42.77 E-value=78 Score=23.69 Aligned_cols=54 Identities=17% Similarity=0.054 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHhcCCceEEe-eCC-CC--CCc----cchHHHHHHhHhcceEEEEeecCCcCC
Q 039184 27 DNFTSHLYSALSQKGIETFI-DND-LK--RGD----EISQSLVDAIEASSISIIIFSESYASS 81 (158)
Q Consensus 27 ~~fv~~L~~~L~~~gi~v~~-d~~-i~--~G~----~~~~~i~~~i~~s~~~I~vlS~~~~~S 81 (158)
..++..+.+.|+..|+.+-+ |-. +. ..+ .-...+.+.|..++ .|++.||.|..+
T Consensus 51 ~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD-~iI~~sP~Yn~s 112 (247)
T 2q62_A 51 RLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSE-GQVWVSPERHGA 112 (247)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCS-EEEEEEECSSSS
T ss_pred HHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCC-EEEEEeCCCCCC
Confidence 35777788888878876643 322 21 111 11346778999999 556778998765
No 34
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=42.44 E-value=46 Score=27.46 Aligned_cols=63 Identities=14% Similarity=0.270 Sum_probs=41.9
Q ss_pred CcccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCC-CCCCccchHHHHHHhHhcceEEEEee
Q 039184 12 NKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDND-LKRGDEISQSLVDAIEASSISIIIFS 75 (158)
Q Consensus 12 ~~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS 75 (158)
...||+|-.-+++. ...+..+...|++.|++|-+|.. -..+.++...+..+-..---+++++.
T Consensus 353 ~p~~V~Vip~~~~~-~~~A~~ia~~LR~~Gi~ve~d~~~~~~~~sl~kq~~~A~~~g~~~~iiiG 416 (467)
T 4e51_A 353 EGVDVYVVHQGDAA-REQAFIVAERLRDTGLDVILHCSADGAGASFKSQMKRADASGAAFAVIFG 416 (467)
T ss_dssp CCCSEEEEECSHHH-HHHHHHHHHHHHHTTCCEEECCCTTSSCCCHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCeEEEEEcChHH-HHHHHHHHHHHHHcCCeEEEEcccccccCCHHHHHHHHHHcCCCEEEEEC
Confidence 34789876554442 46789999999999999998764 11356777777766553333444543
No 35
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=42.19 E-value=7.4 Score=24.79 Aligned_cols=24 Identities=13% Similarity=0.256 Sum_probs=16.1
Q ss_pred EecccCcCchhHHHHHHHHHhcCC
Q 039184 18 LSFKGEDTRDNFTSHLYSALSQKG 41 (158)
Q Consensus 18 ISys~~D~~~~fv~~L~~~L~~~g 41 (158)
.||++.....+|+..|.+.|++.+
T Consensus 22 ~S~R~~~~GSwfIq~Lc~~l~~~~ 45 (88)
T 1sc3_B 22 VSWRHPTMGSVFIGRLIEHMQEYA 45 (88)
T ss_dssp CCCEETTTEEHHHHHHHHHHHHHT
T ss_pred EeeEcCCCCCHHHHHHHHHHHHhC
Confidence 344444345789999999988654
No 36
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=42.14 E-value=82 Score=21.85 Aligned_cols=65 Identities=11% Similarity=0.118 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHhcCCceEEe-eCC-CCCCcc---------c-hHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHHHHH
Q 039184 27 DNFTSHLYSALSQKGIETFI-DND-LKRGDE---------I-SQSLVDAIEASSISIIIFSESYASSSWCLDELLRILEC 94 (158)
Q Consensus 27 ~~fv~~L~~~L~~~gi~v~~-d~~-i~~G~~---------~-~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~~~ 94 (158)
+..++.+.+.|+..|+.+-+ |-. ..+... . ...+.+.+.+++ .|++.||-|..+. ...+..++++
T Consensus 20 ~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD-~ii~gsP~y~~~~--~~~lk~~ld~ 96 (200)
T 2a5l_A 20 AEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCA-GLALGSPTRFGNM--ASPLKYFLDG 96 (200)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCS-EEEEEEECBTTBC--CHHHHHHHHT
T ss_pred HHHHHHHHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCC-EEEEEcChhccCc--cHHHHHHHHH
Confidence 56888999999888876532 221 111100 0 002356778888 5566788888653 2345555554
No 37
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=41.84 E-value=25 Score=28.21 Aligned_cols=59 Identities=20% Similarity=0.365 Sum_probs=37.9
Q ss_pred CcccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhH-hcceEEEEee
Q 039184 12 NKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIE-ASSISIIIFS 75 (158)
Q Consensus 12 ~~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~-~s~~~I~vlS 75 (158)
..+||+|..-+++. ...+..++..|++.|++|-+|.+ +.++...+..+-. +... ++++.
T Consensus 328 ~p~~v~i~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~~~~~a~~~g~p~-~iiig 387 (420)
T 1qe0_A 328 ENLDLFIVTMGDQA-DRYAVKLLNHLRHNGIKADKDYL---QRKIKGQMKQADRLGAKF-TIVIG 387 (420)
T ss_dssp CCCSEEEEECHHHH-HHHHHHHHHHHHTTTCCEEECCS---CCCHHHHHHHHHHTTCSE-EEEEC
T ss_pred CCCeEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEecC---CCCHHHHHHHHHHcCCCE-EEEEC
Confidence 45789877544332 46788999999999999999874 2344444444433 4554 44444
No 38
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=41.60 E-value=31 Score=28.83 Aligned_cols=46 Identities=15% Similarity=0.153 Sum_probs=33.1
Q ss_pred CcccEEEecc-c-Cc--CchhHHHHHHHHHhcCCceEEeeCC-CCCCccch
Q 039184 12 NKYDVFLSFK-G-ED--TRDNFTSHLYSALSQKGIETFIDND-LKRGDEIS 57 (158)
Q Consensus 12 ~~~DVFISys-~-~D--~~~~fv~~L~~~L~~~gi~v~~d~~-i~~G~~~~ 57 (158)
..++|+|--- . ++ .-...+..|++.|++.|++|-+|.+ -.+|..+.
T Consensus 313 aP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~s~g~k~~ 363 (501)
T 1nj1_A 313 AAHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRKYY 363 (501)
T ss_dssp SSCSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTCCEEECCCSSCHHHHHH
T ss_pred cCceEEEEEeccCCchHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHH
Confidence 4488887654 3 31 2357889999999999999999986 55555443
No 39
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=41.40 E-value=1.3e+02 Score=23.69 Aligned_cols=73 Identities=12% Similarity=0.088 Sum_probs=42.8
Q ss_pred cEEEecccCc-CchhHHHHHHHHHhcCCceEEe-eCCCCCCccchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHHH
Q 039184 15 DVFLSFKGED-TRDNFTSHLYSALSQKGIETFI-DNDLKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRIL 92 (158)
Q Consensus 15 DVFISys~~D-~~~~fv~~L~~~L~~~gi~v~~-d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~ 92 (158)
.|.|-|.+.. .-+..++.+.+.|+..|+.+-+ +-. +.-...+.+.+.+++ .|++.||.|..+.-. .+..++
T Consensus 258 kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~l~----~~~~~~~~~~l~~~D-~iiigsP~y~~~~~~--~~k~fl 330 (414)
T 2q9u_A 258 KVTVVLDSMYGTTHRMALALLDGARSTGCETVLLEMT----SSDITKVALHTYDSG-AVAFASPTLNNTMMP--SVAAAL 330 (414)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGG----GCCHHHHHHHHHTCS-EEEEECCCBTTBCCH--HHHHHH
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEEcC----cCCHHHHHHHHHhCC-EEEEEcCccCcCchH--HHHHHH
Confidence 3555554332 1257888999999888876532 221 111235566788888 556668888866433 255555
Q ss_pred HH
Q 039184 93 EC 94 (158)
Q Consensus 93 ~~ 94 (158)
+.
T Consensus 331 d~ 332 (414)
T 2q9u_A 331 NY 332 (414)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 40
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=40.54 E-value=75 Score=26.14 Aligned_cols=60 Identities=13% Similarity=0.081 Sum_probs=39.5
Q ss_pred CcccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEee
Q 039184 12 NKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFS 75 (158)
Q Consensus 12 ~~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS 75 (158)
...|||+...+++. ...+-.+...|++.|++|-++.. +.++...+..|-+.--..++++.
T Consensus 360 ~~~~v~v~~~~~~~-~~~a~~la~~LR~~Gi~ve~~~~---~~slkkq~k~A~k~ga~~vviiG 419 (456)
T 3lc0_A 360 HVVDDVVIPFDESM-RPHALAVLRRLRDAGRSADIILD---KKKVVQAFNYADRVGAVRAVLVA 419 (456)
T ss_dssp CCEEEEEEESSGGG-HHHHHHHHHHHHHTTCCEEECCS---CCCHHHHHHHHHHTTEEEEEEEC
T ss_pred CCCcEEEEEcCHHH-HHHHHHHHHHHHHCCCeEEEecC---CCCHHHHHHHHHHcCCCEEEEEC
Confidence 35788877655553 35678899999999999987643 33466566666554333455554
No 41
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=37.27 E-value=8.8 Score=24.76 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=19.1
Q ss_pred CcccEEEecccCc---------CchhHHHHHHHHHhcCC
Q 039184 12 NKYDVFLSFKGED---------TRDNFTSHLYSALSQKG 41 (158)
Q Consensus 12 ~~~DVFISys~~D---------~~~~fv~~L~~~L~~~g 41 (158)
..-|.+++|+..+ ...+|+..|.+.|++.|
T Consensus 9 ~~aDfL~~yST~pG~~S~R~~~~GSwfIq~Lc~~l~~~~ 47 (97)
T 2ql9_B 9 VEADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEHG 47 (97)
T ss_dssp TTTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEeCCCCcEeeecCCCCCeeHHHHHHHHHHhC
Confidence 3457777766443 34578888888887644
No 42
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=36.43 E-value=32 Score=28.34 Aligned_cols=50 Identities=14% Similarity=0.245 Sum_probs=32.9
Q ss_pred cCcCchhHHHHHHHHHhcCCceEEeeCC-CC----CCccchHHHHHHhHhcceEE
Q 039184 22 GEDTRDNFTSHLYSALSQKGIETFIDND-LK----RGDEISQSLVDAIEASSISI 71 (158)
Q Consensus 22 ~~D~~~~fv~~L~~~L~~~gi~v~~d~~-i~----~G~~~~~~i~~~i~~s~~~I 71 (158)
..|.|++=+-.|.+.|.++|..|.+.+- .. .|..+.+.+.+++++|+++|
T Consensus 346 tdD~R~Sp~~~i~~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~aD~iv 400 (432)
T 3pid_A 346 SDNFRASSIQGIMKRIKAKGIPVIIYEPVMQEDEFFNSRVVRDLNAFKQEADVII 400 (432)
T ss_dssp ------CHHHHHHHHHHHTTCCEEEECTTCCSSEETTEEECCCHHHHHHHCSEEE
T ss_pred CcchhcChHHHHHHHHHhcCCEEEEECCCCChhhcCCceEECCHHHHHhcCCEEE
Confidence 3466788888999999999998876554 33 23334567889999999855
No 43
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=35.71 E-value=1e+02 Score=23.06 Aligned_cols=89 Identities=12% Similarity=0.089 Sum_probs=49.6
Q ss_pred cEEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHHHHH
Q 039184 15 DVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRILEC 94 (158)
Q Consensus 15 DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~~~ 94 (158)
-|.+.=-..|..+-=..-+...|+.+|+.|.. +.+.. -.+++.+++.+.+.-++.+|-....+. ..+...++.
T Consensus 125 ~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~---LG~~v-p~e~l~~~~~~~~~d~V~lS~l~~~~~---~~~~~~i~~ 197 (258)
T 2i2x_B 125 TVVCHVAEGDVHDIGKNIVTALLRANGYNVVD---LGRDV-PAEEVLAAVQKEKPIMLTGTALMTTTM---YAFKEVNDM 197 (258)
T ss_dssp EEEEEECTTCCCCHHHHHHHHHHHHTTCEEEE---EEEEC-CSHHHHHHHHHHCCSEEEEECCCTTTT---THHHHHHHH
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHCCCEEEE---CCCCC-CHHHHHHHHHHcCCCEEEEEeeccCCH---HHHHHHHHH
Confidence 35444334444322234556667899999853 12111 234677777877777777776544433 344444444
Q ss_pred HhhcCCceeeEEEeeCC
Q 039184 95 KTNYGQIVIPVFYRVDP 111 (158)
Q Consensus 95 ~~~~~~~iiPI~~~v~p 111 (158)
.++.+.. +||+.+..+
T Consensus 198 l~~~~~~-~~v~vGG~~ 213 (258)
T 2i2x_B 198 LLENGIK-IPFACGGGA 213 (258)
T ss_dssp HHTTTCC-CCEEEESTT
T ss_pred HHhcCCC-CcEEEECcc
Confidence 3334444 899987543
No 44
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=35.44 E-value=8.5 Score=24.82 Aligned_cols=29 Identities=14% Similarity=0.296 Sum_probs=19.2
Q ss_pred CcccEEEecccCc---------CchhHHHHHHHHHhcC
Q 039184 12 NKYDVFLSFKGED---------TRDNFTSHLYSALSQK 40 (158)
Q Consensus 12 ~~~DVFISys~~D---------~~~~fv~~L~~~L~~~ 40 (158)
..-|.+++|+..+ ...+|+..|.+.|++.
T Consensus 11 ~~aDfL~~ysT~pG~~S~R~~~~GSwfIq~Lc~~l~~~ 48 (95)
T 1qtn_B 11 DEADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRER 48 (95)
T ss_dssp TTCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCcEEEecCCCCcHHHHHHHHHHHHh
Confidence 3567888776544 2357788888777654
No 45
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=34.67 E-value=55 Score=23.17 Aligned_cols=65 Identities=11% Similarity=0.122 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHhcCCceEEe-eCC-CCCCc----------------cchHHHHHHhHhcceEEEEeecCCcCChhHHHHH
Q 039184 27 DNFTSHLYSALSQKGIETFI-DND-LKRGD----------------EISQSLVDAIEASSISIIIFSESYASSSWCLDEL 88 (158)
Q Consensus 27 ~~fv~~L~~~L~~~gi~v~~-d~~-i~~G~----------------~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El 88 (158)
+.+++.+.+.|+..|..+-+ |-. ..+.. ++...+.+.+.+++ .|++-||-|..+.- ..+
T Consensus 21 ~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD-~ii~gsP~y~~~~~--~~l 97 (211)
T 1ydg_A 21 YAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAE-AIVFSSPTRFGGAT--SQM 97 (211)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCS-EEEEEEEEETTEEC--HHH
T ss_pred HHHHHHHHHHHhcCCCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHHHCC-EEEEEcCccccCcc--HHH
Confidence 57889999999888876533 322 21100 11124566788888 56667899886532 234
Q ss_pred HHHHHH
Q 039184 89 LRILEC 94 (158)
Q Consensus 89 ~~a~~~ 94 (158)
..++++
T Consensus 98 k~~ld~ 103 (211)
T 1ydg_A 98 RAFIDT 103 (211)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 444444
No 46
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=34.64 E-value=1.1e+02 Score=21.31 Aligned_cols=51 Identities=4% Similarity=0.030 Sum_probs=31.3
Q ss_pred ccchHHHHHHhHh-----------cceEEEEeecCCcCChhHHHHHHHHHHHHhhcCCceeeEEE
Q 039184 54 DEISQSLVDAIEA-----------SSISIIIFSESYASSSWCLDELLRILECKTNYGQIVIPVFY 107 (158)
Q Consensus 54 ~~~~~~i~~~i~~-----------s~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPI~~ 107 (158)
.++...|..+.+. .+.+|+++|....+......+.... .++.+..|+.|-+
T Consensus 84 T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~~~~~~~~~~~~---~~~~gi~i~~igv 145 (200)
T 1v7p_C 84 TNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDGSMLKAVIDQ---CNHDNILRFGIAV 145 (200)
T ss_dssp CCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCSCGGGHHHHHHH---HHHTTEEEEEEEE
T ss_pred CcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCCCcccHHHHHHH---HHHCCCEEEEEEe
Confidence 5666666666542 3568999999888766543333222 3345666777765
No 47
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=34.24 E-value=45 Score=28.80 Aligned_cols=60 Identities=13% Similarity=0.225 Sum_probs=38.7
Q ss_pred cccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhH-hcceEEEEeecC
Q 039184 13 KYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIE-ASSISIIIFSES 77 (158)
Q Consensus 13 ~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~-~s~~~I~vlS~~ 77 (158)
.++|+|---+++ ....+..|++.|++.|++|-+|.+ +..+...+.++=. +.. .++|+.++
T Consensus 539 P~qv~vipi~~~-~~~~a~~v~~~L~~~Gi~v~~D~~---~~~~g~kir~a~~~g~p-~~ivvG~~ 599 (642)
T 1qf6_A 539 PVQVVIMNITDS-QSEYVNELTQKLSNAGIRVKADLR---NEKIGFKIREHTLRRVP-YMLVCGDK 599 (642)
T ss_dssp SSCEEEEESSHH-HHHHHHHHHHHHHTTTCCEEEECC---SSCHHHHHHHHHHTTCS-EEEEECTT
T ss_pred CceEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEECC---CCCHHHHHHHHHHcCCC-EEEEECch
Confidence 478877654433 357899999999999999999986 2333334443333 444 44555544
No 48
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=33.83 E-value=45 Score=28.09 Aligned_cols=61 Identities=13% Similarity=0.314 Sum_probs=38.3
Q ss_pred cccEEEeccc-C-cCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhH-hcceEEEEeecC
Q 039184 13 KYDVFLSFKG-E-DTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIE-ASSISIIIFSES 77 (158)
Q Consensus 13 ~~DVFISys~-~-D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~-~s~~~I~vlS~~ 77 (158)
.+||+|---+ + +.....+..|+..|++.|++|-+|.+ +.++...+..+-. +.... +++.++
T Consensus 470 p~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~gi~v~~d~~---~~~~g~k~~~a~~~g~p~~-iivG~~ 533 (572)
T 2j3l_A 470 PFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDR---NERAGVKFADADLIGCPIR-ITVGKK 533 (572)
T ss_dssp SCSEEEEESCTTCHHHHHHHHHHHHHHHHTTCCEEEECS---SCCHHHHHHHHHHHCCSEE-EEECGG
T ss_pred CeEEEEEecCCCCHHHHHHHHHHHHHHHhCCCeEEEeCC---CCCHhHHHHHHHhcCCCEE-EEEccc
Confidence 3789876544 2 22256789999999999999999886 2234444444433 45544 444443
No 49
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=33.66 E-value=80 Score=21.86 Aligned_cols=52 Identities=10% Similarity=0.148 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHhc-CCceEEe-eCC-CCCCc------------cchHHHHHHhHhcceEEEEeecCCcCC
Q 039184 27 DNFTSHLYSALSQ-KGIETFI-DND-LKRGD------------EISQSLVDAIEASSISIIIFSESYASS 81 (158)
Q Consensus 27 ~~fv~~L~~~L~~-~gi~v~~-d~~-i~~G~------------~~~~~i~~~i~~s~~~I~vlS~~~~~S 81 (158)
+..++.+.+.|+. .|..+-+ |-. ..++. ... . .+.+.+++ .|++-||-|..+
T Consensus 16 ~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~-~-~~~l~~aD-~ii~gsP~y~~~ 82 (198)
T 3b6i_A 16 ETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVA-T-PQELADYD-AIIFGTPTRFGN 82 (198)
T ss_dssp HHHHHHHHHHHHTSTTCEEEEEECCCCSCHHHHHHTTCCCCCSCBC-C-GGGGGGCS-EEEEEEEEETTE
T ss_pred HHHHHHHHHHHhhcCCCEEEEEEccccCchhhhhhcccccccCchh-h-HHHHHHCC-EEEEEeChhcCC
Confidence 5788999999988 8876533 222 21110 000 1 35667777 566778888755
No 50
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=33.64 E-value=11 Score=24.67 Aligned_cols=30 Identities=17% Similarity=0.218 Sum_probs=19.7
Q ss_pred CcccEEEecccCc---------CchhHHHHHHHHHhcCC
Q 039184 12 NKYDVFLSFKGED---------TRDNFTSHLYSALSQKG 41 (158)
Q Consensus 12 ~~~DVFISys~~D---------~~~~fv~~L~~~L~~~g 41 (158)
..-|.+++|+..+ ...+|+..|.+.|++.|
T Consensus 15 ~~aDfL~~yST~pG~vS~R~~~~GSwfIq~Lc~~l~~~~ 53 (103)
T 2dko_B 15 VEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYA 53 (103)
T ss_dssp TTTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEeCCCCcEeEEcCCCCCeeHHHHHHHHHHhC
Confidence 3467888776544 23578888888887643
No 51
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=33.08 E-value=11 Score=24.69 Aligned_cols=29 Identities=10% Similarity=0.211 Sum_probs=18.8
Q ss_pred cccEEEecccCc---------CchhHHHHHHHHHhcCC
Q 039184 13 KYDVFLSFKGED---------TRDNFTSHLYSALSQKG 41 (158)
Q Consensus 13 ~~DVFISys~~D---------~~~~fv~~L~~~L~~~g 41 (158)
.-|.+++|+..+ ...+|+..|.+.|++.+
T Consensus 14 ~aDfL~~yST~pG~~S~R~~~~GSwFIq~Lc~~l~~~~ 51 (105)
T 1pyo_B 14 RSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERA 51 (105)
T ss_dssp SCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCCcEEEecCCCCCHHHHHHHHHHHHHC
Confidence 456777665433 34678888888887643
No 52
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*
Probab=32.57 E-value=57 Score=26.74 Aligned_cols=53 Identities=19% Similarity=0.331 Sum_probs=38.6
Q ss_pred cCcCchhHHHHHHHHHhcC-CceEEeeCC-CCCCccchHHHHHHhHhcceEEEEee
Q 039184 22 GEDTRDNFTSHLYSALSQK-GIETFIDND-LKRGDEISQSLVDAIEASSISIIIFS 75 (158)
Q Consensus 22 ~~D~~~~fv~~L~~~L~~~-gi~v~~d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS 75 (158)
..|.|++=+-.|.+.|.++ |..|...+- .... .....+.+++++++++|++..
T Consensus 329 tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~-~~~~~~~~~~~~ad~vvi~t~ 383 (431)
T 3ojo_A 329 VDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD-FVEHDMSHAVKDASLVLILSD 383 (431)
T ss_dssp SCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT-TBCSTTHHHHTTCSEEEECSC
T ss_pred CcchhcChHHHHHHHHHhhcCCEEEEECCCcccc-cccCCHHHHHhCCCEEEEecC
Confidence 4567888899999999999 999877654 4332 334567889999997655543
No 53
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=32.38 E-value=49 Score=28.45 Aligned_cols=58 Identities=16% Similarity=0.261 Sum_probs=36.9
Q ss_pred cccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhH-hcceEEEE
Q 039184 13 KYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIE-ASSISIII 73 (158)
Q Consensus 13 ~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~-~s~~~I~v 73 (158)
.++|+|---+.+.....+..|++.|++.|++|-+|.+ +..+...+.++-. +...+|+|
T Consensus 545 p~qv~vip~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~~---~~~~g~k~~~a~~~g~p~~iiv 603 (645)
T 1nyr_A 545 PKQVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDDR---NEKMGYKIREAQMQKIPYQIVV 603 (645)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCS---SCCHHHHHHHHHHHTCSEEEEE
T ss_pred CceEEEEEcccHHHHHHHHHHHHHHHhCCCEEEEECC---CCCHHHHHHHHHhcCCCEEEEE
Confidence 4788775443122357899999999999999999886 2344444444333 45544433
No 54
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=31.82 E-value=72 Score=22.74 Aligned_cols=31 Identities=23% Similarity=0.474 Sum_probs=24.4
Q ss_pred EEecccCcC--chhHHHHHHHHHhcCCceEEee
Q 039184 17 FLSFKGEDT--RDNFTSHLYSALSQKGIETFID 47 (158)
Q Consensus 17 FISys~~D~--~~~fv~~L~~~L~~~gi~v~~d 47 (158)
||.+-+-|- +.+.+..|.+.|+.+|++|-+-
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 777766664 4678899999999999988653
No 55
>2pw6_A Uncharacterized protein YGID; JW3007, escherichia coli structural genomics, protein structure, riken and PSI, protein structu initiative; 2.27A {Escherichia coli} SCOP: c.56.6.1
Probab=31.66 E-value=76 Score=24.20 Aligned_cols=68 Identities=13% Similarity=0.061 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHhcCCceEEeeCC-CCCCccchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHHHHHHh
Q 039184 27 DNFTSHLYSALSQKGIETFIDND-LKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRILECKT 96 (158)
Q Consensus 27 ~~fv~~L~~~L~~~gi~v~~d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~~~~~ 96 (158)
..++.++.+.|...|+.+-..++ +.-|--.. +...-.+.++=|+-+|-+...+.--..+|..+++..+
T Consensus 95 peLA~~i~~~l~~~g~~~~~~~~glDHG~~vP--L~~m~p~adiPVVqlSi~~~~~p~~~~~lG~aL~~lr 163 (271)
T 2pw6_A 95 PALAQRLVELLAPIPVTLDKEAWGFDHGSWGV--LIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALR 163 (271)
T ss_dssp HHHHHHHHHHHTTSCEEEESSCCCCCHHHHHH--HHHHSTTCCSCEEEEEEETTSCHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHhcCCcccccccCCCcchhhh--HHHhcCCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 57999999999999997654344 55454332 2223345666677788887667766679999987654
No 56
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=31.53 E-value=69 Score=26.67 Aligned_cols=51 Identities=12% Similarity=0.070 Sum_probs=31.8
Q ss_pred cCchhHHHHHHHHHhcCCceEE--eeCC--CCCCccchHHHHHHhH-hcceEEEEeecCCc
Q 039184 24 DTRDNFTSHLYSALSQKGIETF--IDND--LKRGDEISQSLVDAIE-ASSISIIIFSESYA 79 (158)
Q Consensus 24 D~~~~fv~~L~~~L~~~gi~v~--~d~~--i~~G~~~~~~i~~~i~-~s~~~I~vlS~~~~ 79 (158)
|.-..++..|++.|++.|++|. +|++ -.+|..+ .++=. +.. .++++.++-+
T Consensus 361 e~~~~~A~~L~~~Lr~~GIrV~~d~Ddr~~~siGkK~----r~Ad~iGiP-y~IiVG~kEl 416 (459)
T 3ikl_A 361 LELRQVCQGLFNELLENGISVWPGYLETMQSSLEQLY----SKYDEMSIL-FTVLVTETTL 416 (459)
T ss_dssp TTHHHHHHHHHHHHHHTSCCEECGGGSSSCCTTHHHH----HHHGGGTCS-EEEEECTTST
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEeecCCcCCCHHHHH----HHHHHcCCC-EEEEECchhh
Confidence 3346789999999999999999 6663 3444433 33322 333 4455555443
No 57
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=30.66 E-value=75 Score=27.81 Aligned_cols=60 Identities=13% Similarity=0.188 Sum_probs=38.6
Q ss_pred cccEEEecccCc-CchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhH-hcceEEEEeec
Q 039184 13 KYDVFLSFKGED-TRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIE-ASSISIIIFSE 76 (158)
Q Consensus 13 ~~DVFISys~~D-~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~-~s~~~I~vlS~ 76 (158)
.+||+|---+++ .-...+..|+..|++.|++|.+|.+ +.++...+..+=. +... ++++.+
T Consensus 559 P~qV~Vipl~~~~~~~~~A~~l~~~Lr~~Gi~v~~D~~---~~sigkk~k~Ad~~G~p~-~IiIG~ 620 (693)
T 2zt5_A 559 PFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDS---SGSIGRRYARTDEIGVAF-GVTIDF 620 (693)
T ss_dssp SCSEEEEESCCSTTTHHHHHHHHHHHHHTTCCEEECCC---CSCHHHHHHHHHHTTCCE-EEEECH
T ss_pred CCeEEEEEecCcHHHHHHHHHHHHHHHHCCCEEEEECC---CCCHHHHHHHHHHcCCCE-EEEEcc
Confidence 478987664443 2357899999999999999999875 2234434444333 4444 444443
No 58
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=30.62 E-value=45 Score=27.48 Aligned_cols=54 Identities=17% Similarity=0.162 Sum_probs=38.9
Q ss_pred cCcCchhHHHHHHHHHhcCCceEEeeCC-CC-------CCccchHHHHHHhHhcceEEEEee
Q 039184 22 GEDTRDNFTSHLYSALSQKGIETFIDND-LK-------RGDEISQSLVDAIEASSISIIIFS 75 (158)
Q Consensus 22 ~~D~~~~fv~~L~~~L~~~gi~v~~d~~-i~-------~G~~~~~~i~~~i~~s~~~I~vlS 75 (158)
..|.|++=+-.|.+.|.++|..|...+- .. ++-.+.+...+++++++.+|++..
T Consensus 336 ~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~ 397 (446)
T 4a7p_A 336 TDDMRDAPSLSIIAALQDAGATVKAYDPEGVEQASKMLTDVEFVENPYAAADGADALVIVTE 397 (446)
T ss_dssp SCCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHHGGGCSSCCBCSCHHHHHTTBSEEEECSC
T ss_pred CcccccChHHHHHHHHHHCCCEEEEECCCCCHhHHHhcCCceEecChhHHhcCCCEEEEeeC
Confidence 4466878888999999999998877554 31 344455577889999997655443
No 59
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=30.59 E-value=1.3e+02 Score=20.57 Aligned_cols=61 Identities=5% Similarity=0.176 Sum_probs=32.0
Q ss_pred CCc-cchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHHHHHHhhcCCceeeEEEeeCCcccc
Q 039184 52 RGD-EISQSLVDAIEASSISIIIFSESYASSSWCLDELLRILECKTNYGQIVIPVFYRVDPSHVR 115 (158)
Q Consensus 52 ~G~-~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPI~~~v~p~~v~ 115 (158)
||. .+.......+..++.+|+|++..-.. ...++...++........-+||++=....|+.
T Consensus 85 ~G~~~~~~~~~~~~~~~d~iilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 85 AGQERFRSIAKSYFRKADGVLLLYDVTCEK---SFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp TTCTTCHHHHHHHHHHCSEEEEEEETTCHH---HHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred CCCcchhhhHHHHHhhCCEEEEEEECCChH---HHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 553 34445567788999999999865332 33333333222221111234666555666654
No 60
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B
Probab=28.62 E-value=16 Score=24.54 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=18.9
Q ss_pred cccEEEecccCc---------CchhHHHHHHHHHhcCC
Q 039184 13 KYDVFLSFKGED---------TRDNFTSHLYSALSQKG 41 (158)
Q Consensus 13 ~~DVFISys~~D---------~~~~fv~~L~~~L~~~g 41 (158)
.-|.+++|+..+ ...+|+..|.+.|++.+
T Consensus 15 ~aDfLi~yST~pG~vS~R~~~~GSwFIQ~Lc~vl~~~~ 52 (118)
T 2xzd_B 15 EADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYA 52 (118)
T ss_dssp TTTEEEEESSCTTBCCCEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCCCEeeEeCCCCCccHHHHHHHHHHhC
Confidence 356677665433 24678888888887643
No 61
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=28.60 E-value=1.2e+02 Score=25.28 Aligned_cols=60 Identities=10% Similarity=0.085 Sum_probs=38.7
Q ss_pred CcccEEEecccC-c-CchhHHHHHHHHHhcCC-ceEEeeCCCCCCccchHHHHHHhH-hcceEEEEeec
Q 039184 12 NKYDVFLSFKGE-D-TRDNFTSHLYSALSQKG-IETFIDNDLKRGDEISQSLVDAIE-ASSISIIIFSE 76 (158)
Q Consensus 12 ~~~DVFISys~~-D-~~~~fv~~L~~~L~~~g-i~v~~d~~i~~G~~~~~~i~~~i~-~s~~~I~vlS~ 76 (158)
..++|+|---++ + .-...+..|+..|++.| ++|-+|.+ .++...+..+=. +... ++++.+
T Consensus 397 aP~~v~Vip~~~~~~~~~~~a~~l~~~Lr~~G~i~v~~D~~----~sig~k~~~ad~~g~p~-~iivG~ 460 (505)
T 1ati_A 397 APIKVAVIPLVKNRPEITEYAKRLKARLLALGLGRVLYEDT----GNIGKAYRRHDEVGTPF-AVTVDY 460 (505)
T ss_dssp CSCSEEEEESCSSCHHHHHHHHHHHHHHHTTCSSCEEECCC----SCHHHHHHHHHHTTCSE-EEEECH
T ss_pred CCceEEEEEcCCccHHHHHHHHHHHHHHhccCCEEEEECCC----CCHHHHHHHHHHCCCCE-EEEECh
Confidence 348998875443 1 23578899999999999 99998874 345555554444 3444 444443
No 62
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=28.49 E-value=2e+02 Score=22.16 Aligned_cols=63 Identities=11% Similarity=0.159 Sum_probs=36.5
Q ss_pred EEEecccCc-CchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeecCCcCCh
Q 039184 16 VFLSFKGED-TRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYASSS 82 (158)
Q Consensus 16 VFISys~~D-~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~ 82 (158)
+.|-|.+.. .-+..+..+.+.|...|+.+-+-+ + .+.-...+.+.+.+++. |++.+|.|..+.
T Consensus 254 i~i~y~S~~GnT~~lA~~ia~~l~~~g~~v~~~~-~--~~~~~~~~~~~~~~~d~-ii~g~p~y~~~~ 317 (398)
T 1ycg_A 254 AVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFK-L--SVSDRNDVIKEILDARA-VLVGSPTINNDI 317 (398)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEE-G--GGSCHHHHHHHHHHCSE-EEEECCCBTTBC
T ss_pred EEEEEECCccHHHHHHHHHHHHHHhcCCeEEEEE-C--CCCCHHHHHHHHHHCCE-EEEECCccCccc
Confidence 445553332 125688889899988886653311 1 12223455666777874 455677777543
No 63
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=28.25 E-value=67 Score=27.08 Aligned_cols=48 Identities=13% Similarity=-0.048 Sum_probs=34.1
Q ss_pred CCcccEEEecccC---------cCchhHHHHHHHHHhcCCceEEeeCC-C-CCCccchH
Q 039184 11 NNKYDVFLSFKGE---------DTRDNFTSHLYSALSQKGIETFIDND-L-KRGDEISQ 58 (158)
Q Consensus 11 ~~~~DVFISys~~---------D~~~~fv~~L~~~L~~~gi~v~~d~~-i-~~G~~~~~ 58 (158)
-..++|.|-=-+. +.-...+..|++.|++.|++|-+|.+ - .+|..+.+
T Consensus 306 laP~qV~Iipi~~~~~~~~~~~e~~~~~a~~l~~~L~~~Girv~~Ddr~~~s~G~K~~~ 364 (519)
T 4hvc_A 306 VACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFNH 364 (519)
T ss_dssp TCSCSEEEEECCC---CCHHHHHHHHHHHHHHHHHHHHTTCCEEECCCSSSCHHHHHHH
T ss_pred CCCeEEEEEEecCcccccchhhHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHH
Confidence 3458887753321 11246789999999999999999987 4 67776654
No 64
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=28.20 E-value=1.2e+02 Score=23.33 Aligned_cols=76 Identities=9% Similarity=0.037 Sum_probs=46.1
Q ss_pred EEEecccCcCchhHHHHHHHHHhcCCc-eE-EeeCCCCCCccchHHHHHHhHhcceEEEEeecC--CcCChhHHHHHHHH
Q 039184 16 VFLSFKGEDTRDNFTSHLYSALSQKGI-ET-FIDNDLKRGDEISQSLVDAIEASSISIIIFSES--YASSSWCLDELLRI 91 (158)
Q Consensus 16 VFISys~~D~~~~fv~~L~~~L~~~gi-~v-~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~--~~~S~wc~~El~~a 91 (158)
+||-+++.|. +..+....+.|++.|+ .+ .++-+ .+.+.-.+++.+.|++++.+.+ ---| ++...|-...+..+
T Consensus 60 ~~IptAs~~~-~~~~~~~~~~f~~lG~~~v~~L~i~-~r~~a~~~~~~~~l~~ad~I~v-~GGnt~~l~~~l~~t~l~~~ 136 (291)
T 3en0_A 60 GIIPSASREP-LLIGERYQTIFSDMGVKELKVLDIR-DRAQGDDSGYRLFVEQCTGIFM-TGGDQLRLCGLLADTPLMDR 136 (291)
T ss_dssp EEECTTCSSH-HHHHHHHHHHHHHHCCSEEEECCCC-SGGGGGCHHHHHHHHHCSEEEE-CCSCHHHHHHHHTTCHHHHH
T ss_pred EEEeCCCCCh-HHHHHHHHHHHHHcCCCeeEEEEec-CccccCCHHHHHHHhcCCEEEE-CCCCHHHHHHHHHhCCHHHH
Confidence 5888988774 5677888889988898 44 33322 2233445677889999986533 2222 22334444455555
Q ss_pred HHH
Q 039184 92 LEC 94 (158)
Q Consensus 92 ~~~ 94 (158)
++.
T Consensus 137 L~~ 139 (291)
T 3en0_A 137 IRQ 139 (291)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 65
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=28.01 E-value=34 Score=22.24 Aligned_cols=18 Identities=22% Similarity=0.588 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHhcCCceE
Q 039184 27 DNFTSHLYSALSQKGIET 44 (158)
Q Consensus 27 ~~fv~~L~~~L~~~gi~v 44 (158)
..|+..|...|..+|++|
T Consensus 9 q~fi~~lk~lLk~RgIkV 26 (94)
T 1bax_A 9 ERYVEQLKQALKTRGVKV 26 (94)
T ss_pred hHHHHHHHHHHHHcCeee
Confidence 479999999999999999
No 66
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=27.87 E-value=39 Score=27.86 Aligned_cols=57 Identities=9% Similarity=0.137 Sum_probs=36.5
Q ss_pred cccEEEecccC-----cCchhHHHHHHHHHhcCCceEEeeC-C-CCCCccchHHHHHHh--HhcceEEEE
Q 039184 13 KYDVFLSFKGE-----DTRDNFTSHLYSALSQKGIETFIDN-D-LKRGDEISQSLVDAI--EASSISIII 73 (158)
Q Consensus 13 ~~DVFISys~~-----D~~~~fv~~L~~~L~~~gi~v~~d~-~-i~~G~~~~~~i~~~i--~~s~~~I~v 73 (158)
.++|+|-.-.. +.....+..|++.|++.|++|-+|. + -.+|. .+..+- .+....|+|
T Consensus 338 p~qv~Iip~~~~~~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~~~~~~~g~----k~~~a~~~~gip~~iii 403 (471)
T 3a32_A 338 PIQFAVIAVKTGGEVDREIEDLASSIAKGLLDKGFRVAVKGSSKTGLSS----DVRHIESTAKPAVNVFI 403 (471)
T ss_dssp SCSEEEEEEECSSTTHHHHHHHHHHHHHHHHHTTCEEEEEEEETTTHHH----HHHHHHHTTCCSEEEEE
T ss_pred CceEEEEEccCcccccHHHHHHHHHHHHHHHHCCCEEEEecCCCCCHHH----HHHHHHHhcCCCEEEEE
Confidence 47787765431 2235678999999999999999987 5 44444 333333 455544443
No 67
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=27.75 E-value=1.8e+02 Score=25.54 Aligned_cols=69 Identities=14% Similarity=0.079 Sum_probs=43.6
Q ss_pred hHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHHHHHHhhcCCceeeEEE
Q 039184 28 NFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRILECKTNYGQIVIPVFY 107 (158)
Q Consensus 28 ~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPI~~ 107 (158)
..+..|..+|+++|+.|-... +..+.+...-.++++..+|+|-+-. ..++...++.. ..=||||+
T Consensus 17 ~~i~~L~~~Le~~g~~V~~a~------s~~Da~~~i~~~~~i~avIld~d~~-----~~~ll~~Ir~~----~~~iPVFl 81 (715)
T 3n75_A 17 EPIRELHRALERLNFQIVYPN------DRDDLLKLIENNARLCGVIFDWDKY-----NLELCEEISKM----NENLPLYA 81 (715)
T ss_dssp HHHHHHHHHHHHTTCEEECCS------SHHHHHHHHHHCTTEEEEEEEHHHH-----HHHHHHHHHHH----CTTCEEEE
T ss_pred HHHHHHHHHHHHCCcEEEEeC------CHHHHHHHHHhCCCceEEEEecccc-----HHHHHHHHHHh----CCCCCEEE
Confidence 568899999999999996533 3333343334578899999975432 23444444332 25678887
Q ss_pred eeCC
Q 039184 108 RVDP 111 (158)
Q Consensus 108 ~v~p 111 (158)
-.+.
T Consensus 82 ~~~~ 85 (715)
T 3n75_A 82 FANT 85 (715)
T ss_dssp ECCT
T ss_pred EecC
Confidence 4333
No 68
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=27.54 E-value=1.7e+02 Score=20.84 Aligned_cols=51 Identities=12% Similarity=0.041 Sum_probs=32.9
Q ss_pred hHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeecCCcCC
Q 039184 28 NFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYASS 81 (158)
Q Consensus 28 ~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S 81 (158)
.++..+.+.|+..|..|-+-+ +..+++ ..++.+.|..++ .|++.+|-|.-+
T Consensus 34 ~l~~~~~~~~~~~g~~v~~~d-L~~~~d-~~~~~~~l~~AD-~iV~~~P~y~~s 84 (204)
T 2amj_A 34 TLTEVADGTLRDLGHDVRIVR-ADSDYD-VKAEVQNFLWAD-VVIWQMPGWWMG 84 (204)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE-SSSCCC-HHHHHHHHHHCS-EEEEEEECBTTB
T ss_pred HHHHHHHHHHHHcCCEEEEEe-CCcccc-HHHHHHHHHhCC-EEEEECCccccC
Confidence 466667777777786663311 333334 347788999999 556778888755
No 69
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=27.20 E-value=76 Score=25.33 Aligned_cols=36 Identities=17% Similarity=0.050 Sum_probs=26.9
Q ss_pred CcccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCC
Q 039184 12 NKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDND 49 (158)
Q Consensus 12 ~~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~ 49 (158)
..+||+|..-+++. ...+..++..|++. ++|-+|.+
T Consensus 327 ~p~~v~i~~~~~~~-~~~a~~l~~~Lr~~-i~v~~d~~ 362 (421)
T 1h4v_B 327 KGPDLYLIPLTEEA-VAEAFYLAEALRPR-LRAEYALA 362 (421)
T ss_pred CCCeEEEEECChHH-HHHHHHHHHHHHhc-CEEEEecC
Confidence 45789886554442 46788999999999 99988764
No 70
>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*
Probab=27.18 E-value=87 Score=25.03 Aligned_cols=51 Identities=16% Similarity=0.256 Sum_probs=33.9
Q ss_pred cCcCchhHHHHHHHHHhcCCceEEeeCC-CCCCc-----cchHHHHHHhHhcceEEE
Q 039184 22 GEDTRDNFTSHLYSALSQKGIETFIDND-LKRGD-----EISQSLVDAIEASSISII 72 (158)
Q Consensus 22 ~~D~~~~fv~~L~~~L~~~gi~v~~d~~-i~~G~-----~~~~~i~~~i~~s~~~I~ 72 (158)
..|.|++=+-.|.+.|.++|..|...+- +.... .+...+.+++++++++|+
T Consensus 323 ~~d~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 379 (402)
T 1dlj_A 323 SDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLESEDQSVLVNDLENFKKQANIIVT 379 (402)
T ss_dssp CSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCTTCCSEECCCHHHHHHHCSEEEC
T ss_pred CcccccChHHHHHHHHHHCCCEEEEECCCCChHHHHcCCeecCCHHHHHhCCcEEEE
Confidence 3466788888888999888888876554 43321 122346677788887665
No 71
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=27.17 E-value=56 Score=21.71 Aligned_cols=62 Identities=15% Similarity=0.232 Sum_probs=38.8
Q ss_pred HHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHHHHHHhhcCCceeeEEEee
Q 039184 35 SALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRILECKTNYGQIVIPVFYRV 109 (158)
Q Consensus 35 ~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPI~~~v 109 (158)
..++-.|+.++.. ..-+...+.+.+.+++ ++.|++++++.... +..++.. ++ ...+|+++.+
T Consensus 15 ~GFrLaGie~~~v---~~~ee~~~~~~~l~~~-digIIlIte~ia~~--i~~~i~~-~~------~~~~P~IveI 76 (115)
T 3aon_B 15 SPFRLFGFDVQHG---TTKTEIRKTIDEMAKN-EYGVIYITEQCANL--VPETIER-YK------GQLTPAIILI 76 (115)
T ss_dssp GGGGGGTCEEECC---CSHHHHHHHHHHHHHT-TEEEEEEEHHHHTT--CHHHHHH-HH------TSSSCEEEEE
T ss_pred HHHHHcCCeEEEe---CCHHHHHHHHHHHHhc-CceEEEEeHHHHHH--hHHHHHH-Hh------CCCCCEEEEE
Confidence 4556678888753 2234555667777777 99999999987752 4444444 21 2455666543
No 72
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=26.24 E-value=1.2e+02 Score=21.16 Aligned_cols=78 Identities=15% Similarity=0.125 Sum_probs=44.3
Q ss_pred hhHHHHHHHH-HhcCCceEEe-eCC-CCC--------CccchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHHHHHH
Q 039184 27 DNFTSHLYSA-LSQKGIETFI-DND-LKR--------GDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRILECK 95 (158)
Q Consensus 27 ~~fv~~L~~~-L~~~gi~v~~-d~~-i~~--------G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~~~~ 95 (158)
+.++..+.+. |+..|..+-+ |-. +.. -.+-...+.+.+.+++. |++.||.|..+- ...+..++++.
T Consensus 19 ~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~-ii~~sP~y~~~~--p~~lK~~ld~l 95 (197)
T 2vzf_A 19 AKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADG-LIVATPIYKASY--TGLLKAFLDIL 95 (197)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSE-EEEEEECBTTBC--CHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCE-EEEEeCccCCCC--CHHHHHHHHhc
Confidence 4688888888 8888876533 322 211 00112355677888884 567789987653 23455555543
Q ss_pred h---hcCCceeeEEE
Q 039184 96 T---NYGQIVIPVFY 107 (158)
Q Consensus 96 ~---~~~~~iiPI~~ 107 (158)
. -.+..+.++-.
T Consensus 96 ~~~~~~gK~~~~~~t 110 (197)
T 2vzf_A 96 PQFALAGKAALPLAT 110 (197)
T ss_dssp CTTTTTTCEEEEEEE
T ss_pred cccccCCCEEEEEEE
Confidence 2 12445555544
No 73
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=26.09 E-value=1.4e+02 Score=19.62 Aligned_cols=62 Identities=10% Similarity=0.078 Sum_probs=33.4
Q ss_pred CCCc-cchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHHHHHHhhcCCceeeEEEeeCCcccc
Q 039184 51 KRGD-EISQSLVDAIEASSISIIIFSESYASSSWCLDELLRILECKTNYGQIVIPVFYRVDPSHVR 115 (158)
Q Consensus 51 ~~G~-~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPI~~~v~p~~v~ 115 (158)
.||. .+.......+..++.+|+|++..- .....++...+.........-+|+++=....|+.
T Consensus 68 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 130 (181)
T 2efe_B 68 TAGQERYHSLAPMYYRGAAAAIIVFDVTN---QASFERAKKWVQELQAQGNPNMVMALAGNKSDLL 130 (181)
T ss_dssp CCCSGGGGGGTHHHHTTCSEEEEEEETTC---HHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred CCCChhhhhhhHHHhccCCEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 3564 344445567889999999998653 3333444444433222222334555545556653
No 74
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=26.09 E-value=1.4e+02 Score=19.42 Aligned_cols=65 Identities=14% Similarity=0.205 Sum_probs=41.0
Q ss_pred HHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHHHHHHhhcCCceeeEEEeeC
Q 039184 35 SALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRILECKTNYGQIVIPVFYRVD 110 (158)
Q Consensus 35 ~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPI~~~v~ 110 (158)
..++-.|+.++.. ...+...+.+.+.+++-++.|++++++... .+..++... + ....+|+++.+.
T Consensus 16 ~GFrLaGi~~~~v---~~~ee~~~~~~~l~~~~digIIlIte~~a~--~i~~~i~~~----~--~~~~~P~Il~IP 80 (109)
T 2d00_A 16 QGFRLAGLEGYGA---SSAEEAQSLLETLVERGGYALVAVDEALLP--DPERAVERL----M--RGRDLPVLLPIA 80 (109)
T ss_dssp HHHHHTTSEEEEC---SSHHHHHHHHHHHHHHCCCSEEEEETTTCS--CHHHHHHHH----T--TCCCCCEEEEES
T ss_pred HHHHHcCCeEEEe---CCHHHHHHHHHHHhhCCCeEEEEEeHHHHH--hhHHHHHHH----H--hCCCCeEEEEEC
Confidence 4566679988753 233455566777777779999999999887 244343333 2 123467765543
No 75
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=25.70 E-value=1.4e+02 Score=19.40 Aligned_cols=77 Identities=12% Similarity=0.327 Sum_probs=47.9
Q ss_pred hHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHHHHHHhhcCCceeeEEE
Q 039184 28 NFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRILECKTNYGQIVIPVFY 107 (158)
Q Consensus 28 ~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPI~~ 107 (158)
.-...+.+-..++|++|-. ...-+.+.+.|.+-+.+-...|+++--+ ..+|.. +|++..+..+..++.|.|
T Consensus 13 etlrkfkdiikkngfkvrt---vrspqelkdsieelvkkynativvvvvd--dkewae----kairfvkslgaqvliiiy 83 (134)
T 2l69_A 13 ETLRKFKDIIKKNGFKVRT---VRSPQELKDSIEELVKKYNATIVVVVVD--DKEWAE----KAIRFVKSLGAQVLIIIY 83 (134)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ECSHHHHHHHHHHHTTCCCCEEEEEECS--SHHHHH----HHHHHHHHHCCCCEEEEE
T ss_pred HHHHHHHHHHHhcCceEEE---ecCHHHHHHHHHHHHHHhCCeEEEEEEc--cHHHHH----HHHHHHHhcCCeEEEEEE
Confidence 4567788888899999865 3444566677777777655555544322 235654 445544555666777777
Q ss_pred eeCCcc
Q 039184 108 RVDPSH 113 (158)
Q Consensus 108 ~v~p~~ 113 (158)
+-+...
T Consensus 84 dqdqnr 89 (134)
T 2l69_A 84 DQDQNR 89 (134)
T ss_dssp CSCHHH
T ss_pred eCchhH
Confidence 644433
No 76
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=25.47 E-value=1.4e+02 Score=22.89 Aligned_cols=54 Identities=20% Similarity=0.028 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHhcCCceEEe-eCC-CC--CCc-----cchHHHHHHhHhcceEEEEeecCCcCC
Q 039184 27 DNFTSHLYSALSQKGIETFI-DND-LK--RGD-----EISQSLVDAIEASSISIIIFSESYASS 81 (158)
Q Consensus 27 ~~fv~~L~~~L~~~gi~v~~-d~~-i~--~G~-----~~~~~i~~~i~~s~~~I~vlS~~~~~S 81 (158)
...+..+.+.|+..|..+-+ |-. +. ..+ +-...+.+.|..++ .|++.||.|..+
T Consensus 75 ~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~AD-giV~aSP~Yn~s 137 (279)
T 2fzv_A 75 RLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSE-GQVWCSPERHGQ 137 (279)
T ss_dssp HHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCS-EEEEEEEEETTE
T ss_pred HHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCC-eEEEEcCccccC
Confidence 35677777888877876543 322 22 111 11346778899999 556678888765
No 77
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=25.23 E-value=2.4e+02 Score=21.82 Aligned_cols=74 Identities=9% Similarity=0.123 Sum_probs=43.7
Q ss_pred cEEEecccCc-CchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHHHH
Q 039184 15 DVFLSFKGED-TRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRILE 93 (158)
Q Consensus 15 DVFISys~~D-~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~~ 93 (158)
.+.|-|.+.. .-+..++.+.+.|...|+.+-+- ...+.-...+.+.+.+++ .|++.||.|..+.-. .+..+++
T Consensus 258 k~~i~~~S~~gnT~~la~~i~~~l~~~g~~v~~~---~~~~~~~~~~~~~l~~~d-~iiigsP~y~~~~~~--~~k~~ld 331 (404)
T 2ohh_A 258 RVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVY---CLHEDDRSEIVKDILESG-AIALGAPTIYDEPYP--SVGDLLM 331 (404)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHHHHTTTCEEEEE---ETTTSCHHHHHHHHHTCS-EEEEECCEETTEECT--HHHHHHH
T ss_pred cEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEE---ECCCCCHHHHHHHHHHCC-EEEEECccccccchH--HHHHHHH
Confidence 3555554332 12578899999998888766331 112222345667788888 556678888765432 3555555
Q ss_pred H
Q 039184 94 C 94 (158)
Q Consensus 94 ~ 94 (158)
.
T Consensus 332 ~ 332 (404)
T 2ohh_A 332 Y 332 (404)
T ss_dssp H
T ss_pred H
Confidence 4
No 78
>1tu9_A Hypothetical protein PA3967; structural genomics, heme, hemoglobin, pseudomonas aeruginos PSI, protein structure initiative; HET: HEM; 1.20A {Pseudomonas aeruginosa} SCOP: a.1.1.2
Probab=25.02 E-value=31 Score=22.93 Aligned_cols=44 Identities=7% Similarity=0.155 Sum_probs=30.0
Q ss_pred EeeCCcccccccCchHHHHHHHHhcc-hhHHHHHHHHHHHhhccc
Q 039184 107 YRVDPSHVRKQSGNFEDSFSKLEEQF-PDRMQTWRIALTEAANLS 150 (158)
Q Consensus 107 ~~v~p~~v~~~~~~~~~~f~~~~~~~-~~~~~~W~~al~~i~~~~ 150 (158)
++|+|.+.+.....+-..+.++...+ +|....|..++..+++..
T Consensus 84 ~gV~p~~f~~~~~~Ll~~l~~lg~~~t~e~~~AW~~~~~~~a~~l 128 (134)
T 1tu9_A 84 LDIRPELYDLWLDALLMAVAEHDRDCDAETRDAWRDVMGRGIAVI 128 (134)
T ss_dssp TCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence 35777776655445556666633334 788899999999988764
No 79
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=24.67 E-value=1.5e+02 Score=19.23 Aligned_cols=62 Identities=13% Similarity=0.075 Sum_probs=34.1
Q ss_pred CCc-cchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHHHHHHhhcCCceeeEEEeeCCccccc
Q 039184 52 RGD-EISQSLVDAIEASSISIIIFSESYASSSWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRK 116 (158)
Q Consensus 52 ~G~-~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPI~~~v~p~~v~~ 116 (158)
||. .+.......+..++.+|+|++.+-.. ...++...++........-+||++=....|+..
T Consensus 63 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1z0j_A 63 AGLERFRALAPMYYRGSAAAIIVYDITKEE---TFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 125 (170)
T ss_dssp CCSGGGGGGTHHHHTTCSEEEEEEETTCHH---HHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG
T ss_pred CCchhhhcccHhhCcCCCEEEEEEECcCHH---HHHHHHHHHHHHHHhCCCCCcEEEEEECCcccc
Confidence 553 34444556778999999999865433 233333333332222334456665455666543
No 80
>3rjm_B Caspase-2; caspase-2, caspase, hydrolase-hydrolase inhibitor; HET: 3PX; 2.55A {Homo sapiens}
Probab=24.60 E-value=19 Score=24.22 Aligned_cols=30 Identities=10% Similarity=0.210 Sum_probs=20.0
Q ss_pred CcccEEEecccCc---------CchhHHHHHHHHHhcCC
Q 039184 12 NKYDVFLSFKGED---------TRDNFTSHLYSALSQKG 41 (158)
Q Consensus 12 ~~~DVFISys~~D---------~~~~fv~~L~~~L~~~g 41 (158)
.+-|.+++||..+ ...+|+..|.+.|++.+
T Consensus 14 ~eADfL~~yST~pGyvS~R~~~~GSwFIQ~Lc~vl~~~~ 52 (117)
T 3rjm_B 14 TRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERA 52 (117)
T ss_dssp SSCSEEEEESSCTTCCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CccCEEEEEcCCCCeECeeecCCCChHHHHHHHHHHHhC
Confidence 3467777776544 23678888888887654
No 81
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=24.23 E-value=97 Score=25.49 Aligned_cols=45 Identities=13% Similarity=0.129 Sum_probs=31.5
Q ss_pred cccEEEecccCc-C-chhHHHHHHHHHhcC--------------CceEEeeCC-CCCCccch
Q 039184 13 KYDVFLSFKGED-T-RDNFTSHLYSALSQK--------------GIETFIDND-LKRGDEIS 57 (158)
Q Consensus 13 ~~DVFISys~~D-~-~~~fv~~L~~~L~~~--------------gi~v~~d~~-i~~G~~~~ 57 (158)
.++|+|---+++ . ....+..|.+.|++. |++|-+|.+ -.+|..+.
T Consensus 345 P~qv~Vipi~~~~~~~~~~a~~l~~~Lr~~~~~~~~~~~~~~~~Gi~v~~D~~~~~lg~k~r 406 (460)
T 3uh0_A 345 PYQAVIIPVNTKNVQQLDMCTALQKKLRNELEADDMEPVPLNDWHFNVDLDIRNEPVGYRIK 406 (460)
T ss_dssp SCCEEEEESSTTCHHHHHHHHHHHHHHHCCCCTTSSCCCCTTCCCCCEEECCCSSCHHHHHH
T ss_pred CceEEEEEecCCcHHHHHHHHHHHHHHHcCcccccccccccCCCCEEEEEECCCCCHHHHHH
Confidence 478877543332 1 246899999999998 999999987 55555443
No 82
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=24.20 E-value=1.7e+02 Score=19.80 Aligned_cols=62 Identities=10% Similarity=0.088 Sum_probs=33.9
Q ss_pred CCc-cchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHHHHHHhhcCCceeeEEEeeCCccccc
Q 039184 52 RGD-EISQSLVDAIEASSISIIIFSESYASSSWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRK 116 (158)
Q Consensus 52 ~G~-~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPI~~~v~p~~v~~ 116 (158)
||. .+.......+..++.+|+|++.+-.. ...++...+.........-+|+++=....|+..
T Consensus 80 ~G~~~~~~~~~~~~~~~d~iilV~d~~~~~---s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~ 142 (192)
T 2fg5_A 80 AGQERFHSLAPMYYRGSAAAVIVYDITKQD---SFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD 142 (192)
T ss_dssp CCSGGGGGGTHHHHTTCSEEEEEEETTCTH---HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred CCchhhHhhhHHhhccCCEEEEEEeCCCHH---HHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 554 34445567788999999999865433 333443333332222222346655556666643
No 83
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}
Probab=24.08 E-value=61 Score=26.97 Aligned_cols=53 Identities=15% Similarity=0.307 Sum_probs=37.9
Q ss_pred cCcCchhHHHHHHHHHhcCCceEEeeCC-CC--CCccchHHHHHHhHhcceEEEEe
Q 039184 22 GEDTRDNFTSHLYSALSQKGIETFIDND-LK--RGDEISQSLVDAIEASSISIIIF 74 (158)
Q Consensus 22 ~~D~~~~fv~~L~~~L~~~gi~v~~d~~-i~--~G~~~~~~i~~~i~~s~~~I~vl 74 (158)
..|.|++=+-.|.+.|.++|..|...+= .. ++-.+...+.+++++++++|++.
T Consensus 367 tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~ad~vvi~t 422 (478)
T 3g79_A 367 SDDARNTPSEPYRDLCLKAGASVMVHDPYVVNYPGVEISDNLEEVVRNADAIVVLA 422 (478)
T ss_dssp CSCCTTCTHHHHHHHHHHHTCEEEEECSSCCCBTTBCEESCHHHHHTTCSEEEECS
T ss_pred CcchhcCcHHHHHHHHHHCCCEEEEECCCcccccCcceecCHHHHHhcCCEEEEec
Confidence 4566888888999999999998877554 22 33334457788999999765544
No 84
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=23.60 E-value=98 Score=21.15 Aligned_cols=55 Identities=15% Similarity=0.178 Sum_probs=27.7
Q ss_pred CccchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHH---HHHHHhhcCCceeeEEEeeCCc
Q 039184 53 GDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLR---ILECKTNYGQIVIPVFYRVDPS 112 (158)
Q Consensus 53 G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~---a~~~~~~~~~~iiPI~~~v~p~ 112 (158)
|+.+.- ..+++ +++|+-+--... ..||..++.. +.+..++.+..|..|+..++|.
T Consensus 22 G~~v~l---~d~~G-k~vll~F~~t~C-p~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~ 79 (170)
T 4hde_A 22 GKPFGT---KDLKG-KVWVADFMFTNC-QTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPD 79 (170)
T ss_dssp SCEEEH---HHHTT-SCEEEEEECTTC-SSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTT
T ss_pred CCEEeH---HHhCC-CEEEEEEECCCC-CCcccHHHHHHHHHHHhhhcccccceeEeeecCcc
Confidence 555542 22343 445444432222 2478655544 4444344455677777777764
No 85
>4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp}
Probab=23.57 E-value=1.5e+02 Score=21.63 Aligned_cols=34 Identities=12% Similarity=0.181 Sum_probs=26.3
Q ss_pred cccEEEecccCcCc--hhHHHHHHHHHhcCCceEEe
Q 039184 13 KYDVFLSFKGEDTR--DNFTSHLYSALSQKGIETFI 46 (158)
Q Consensus 13 ~~DVFISys~~D~~--~~fv~~L~~~L~~~gi~v~~ 46 (158)
..-||+.|-..|.- ......+.+.|++.|+++-+
T Consensus 183 ~~Pvl~~HG~~D~vVp~~~~~~~~~~L~~~g~~v~~ 218 (246)
T 4f21_A 183 GLPILVCHGTDDQVLPEVLGHDLSDKLKVSGFANEY 218 (246)
T ss_dssp TCCEEEEEETTCSSSCHHHHHHHHHHHHTTTCCEEE
T ss_pred CCchhhcccCCCCccCHHHHHHHHHHHHHCCCCeEE
Confidence 34599999888852 45678889999999988754
No 86
>3ubc_A Hemoglobin-like flavoprotein; oxygen-bound, autoxidation, nanotemplate, langmuir-blodgett, films, oxygen transport; HET: HEM; 1.65A {Methylacidiphilum infernorum V4} PDB: 3ubv_A* 3s1i_A* 3s1j_A*
Probab=23.57 E-value=38 Score=22.34 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=28.3
Q ss_pred EeeCCcccccccCchHHHHHHHHh-cc-hhHHHHHHHHHHHhhcc
Q 039184 107 YRVDPSHVRKQSGNFEDSFSKLEE-QF-PDRMQTWRIALTEAANL 149 (158)
Q Consensus 107 ~~v~p~~v~~~~~~~~~~f~~~~~-~~-~~~~~~W~~al~~i~~~ 149 (158)
++|+|.+.+.....+-..+.+... .+ ++....|..++..|++.
T Consensus 84 ~gV~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~~~~~~va~~ 128 (131)
T 3ubc_A 84 YGVVDSHYPLVGDCLLKSIQEYLGQGFTEEAKAAWTKVYGIAAQV 128 (131)
T ss_dssp TTCCTTHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhCccCCHHHHHHHHHHHHHHHHH
Confidence 457787765544444445555443 23 78899999999988864
No 87
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=23.08 E-value=1.7e+02 Score=22.77 Aligned_cols=99 Identities=15% Similarity=0.277 Sum_probs=56.2
Q ss_pred cEEEecccCcC--chhHHHHHHHHHhcCCceEEeeCC---CCCCccchHHHHHHhHhcceEEEEeecCCcCCh-------
Q 039184 15 DVFLSFKGEDT--RDNFTSHLYSALSQKGIETFIDND---LKRGDEISQSLVDAIEASSISIIIFSESYASSS------- 82 (158)
Q Consensus 15 DVFISys~~D~--~~~fv~~L~~~L~~~gi~v~~d~~---i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~------- 82 (158)
-|||-+-+-|. +...+..|...|..+|++|..-.. -..+..+...+...+-.... |+|+-..+-++-
T Consensus 86 ~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt~eE~~~~yl~R~~~~LP~~G~-IvIfDRswYs~v~~~rv~g 164 (304)
T 3czq_A 86 RVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPTETERGQWYFQRYVATFPTAGE-FVLFDRSWYNRAGVEPVMG 164 (304)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCCHHHHTSCTTHHHHTTCCCTTC-EEEEEECGGGGTTHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcChHHHhchHHHHHHHhcccCCe-EEEEECCcchHHHHHHHhc
Confidence 48999877765 467889999999999998865332 12223344445555533333 334444332221
Q ss_pred hH-HHHHHHHHHH-------HhhcCCceeeEEEeeCCccc
Q 039184 83 WC-LDELLRILEC-------KTNYGQIVIPVFYRVDPSHV 114 (158)
Q Consensus 83 wc-~~El~~a~~~-------~~~~~~~iiPI~~~v~p~~v 114 (158)
.| ..|....++. ..+.+..++-+|+++++..-
T Consensus 165 ~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq 204 (304)
T 3czq_A 165 FCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQ 204 (304)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHH
Confidence 12 1223333322 12345678888899999874
No 88
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=22.95 E-value=1.6e+02 Score=19.00 Aligned_cols=45 Identities=7% Similarity=0.209 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHhcCCceEEe-eCC-CCCCccchHHHHHHhHhcceEEEEeecCCcCC
Q 039184 27 DNFTSHLYSALSQKGIETFI-DND-LKRGDEISQSLVDAIEASSISIIIFSESYASS 81 (158)
Q Consensus 27 ~~fv~~L~~~L~~~gi~v~~-d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S 81 (158)
+.+++.|.+.|+..|+.|-+ |-. .. ...+.+++ .|++.+|.|..+
T Consensus 13 ~~iA~~ia~~l~~~g~~v~~~~~~~~~---------~~~l~~~d-~iiig~pty~~g 59 (138)
T 5nul_A 13 EKMAELIAKGIIESGKDVNTINVSDVN---------IDELLNED-ILILGCSAMTDE 59 (138)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEGGGCC---------HHHHTTCS-EEEEEECCBTTT
T ss_pred HHHHHHHHHHHHHCCCeEEEEEhhhCC---------HHHHhhCC-EEEEEcCccCCC
Confidence 57999999999998876533 221 11 12355666 455667777754
No 89
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=22.70 E-value=1.9e+02 Score=19.87 Aligned_cols=63 Identities=13% Similarity=0.042 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHhcCCceEEe-eCC-CCCCc-------------cchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHH
Q 039184 27 DNFTSHLYSALSQKGIETFI-DND-LKRGD-------------EISQSLVDAIEASSISIIIFSESYASSSWCLDELLRI 91 (158)
Q Consensus 27 ~~fv~~L~~~L~~~gi~v~~-d~~-i~~G~-------------~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a 91 (158)
+..++.+.+.|+..|..+-+ |-. ..++. .+. . .+.+.+++. |++-||-|..+-- ..+..+
T Consensus 18 ~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~d~~~~~-~-~~~l~~aD~-ii~gsP~y~~~~~--~~lk~~ 92 (199)
T 2zki_A 18 VELAKEIGKGAEEAGAEVKIRRVRETLPPEFQSRIPFDKVKDIPEV-T-LDDMRWADG-FAIGSPTRYGNMA--GGLKTF 92 (199)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEECCCCSCGGGGTTCCGGGSTTSCBC-C-HHHHHHCSE-EEEEEECBTTBCC--HHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEEehhHhCChhhhhccCCCcccccccc-c-HHHHHhCCE-EEEECCccccCcc--HHHHHH
Confidence 56888888989887876532 222 21110 111 2 567888885 5677899886532 234444
Q ss_pred HHH
Q 039184 92 LEC 94 (158)
Q Consensus 92 ~~~ 94 (158)
+++
T Consensus 93 ld~ 95 (199)
T 2zki_A 93 LDT 95 (199)
T ss_dssp HHT
T ss_pred HHH
Confidence 444
No 90
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Probab=21.80 E-value=1.8e+02 Score=22.38 Aligned_cols=64 Identities=11% Similarity=0.144 Sum_probs=33.3
Q ss_pred hHHHHHHHHHhcCC----ceEEeeCCCCCCccchHHHHHHhHh---cceEEEEeecCCcCC--hhHHHHHHHHHH
Q 039184 28 NFTSHLYSALSQKG----IETFIDNDLKRGDEISQSLVDAIEA---SSISIIIFSESYASS--SWCLDELLRILE 93 (158)
Q Consensus 28 ~fv~~L~~~L~~~g----i~v~~d~~i~~G~~~~~~i~~~i~~---s~~~I~vlS~~~~~S--~wc~~El~~a~~ 93 (158)
..+..|.+.|...| +.|.+- +.-|.+..++..+.+.+ .+++++.+.|.|..+ .-..+++..++.
T Consensus 62 ~q~~~L~~~L~~~~~~~~~~V~~a--mry~~P~i~~~l~~l~~~G~~~ivvlPl~pq~s~st~g~~~~~i~~~l~ 134 (310)
T 2h1v_A 62 QQAHNLEQHLNEIQDEITFKAYIG--LAHIEPFIEDAVAEMHKDGITEAVSIVLAPHFSTFSVQSYNKRAKEEAE 134 (310)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEEEE--ESSSSSBHHHHHHHHHHTTCCEEEEEESSSSCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCceEeeh--hcCCCCCHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHHHH
Confidence 45667777776543 445443 34444444333333332 455777788877543 334445555543
No 91
>3dt5_A Uncharacterized protein AF_0924; structural genomics, APC7732, unknown function, PSI-2, prote structure initiative; HET: MSE; 1.94A {Archaeoglobus fulgidus}
Probab=21.33 E-value=37 Score=22.26 Aligned_cols=54 Identities=24% Similarity=0.394 Sum_probs=30.9
Q ss_pred HHHHHhHhcceEEEEeecCCcCChhHHHHHHHHHHHHh----hcCCceeeEEEeeCCc
Q 039184 59 SLVDAIEASSISIIIFSESYASSSWCLDELLRILECKT----NYGQIVIPVFYRVDPS 112 (158)
Q Consensus 59 ~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~~~~~----~~~~~iiPI~~~v~p~ 112 (158)
.|.+.+++--+-++--=..|+-.....+|+..++.|++ ++-.+|+|.-++-...
T Consensus 18 aiedrlekfyiplikafssyvytaqtedeietiitcrrylagnnllrvlpmhfkfkad 75 (135)
T 3dt5_A 18 AIEDRLEKFYIPLIKAFSSYVYTAQTEDEIETIITCRRYLAGNNLLRVLPMHFKFKAD 75 (135)
T ss_dssp HHHHHHHHTHHHHHHHHHSSCCCTTHHHHHHHHHHTTGGGSCHHHHHHCCSCCGGGEE
T ss_pred HHHHHHHHHHHHHHHHHHhHheeccchhHHHHHHHHHHHhcccchhhhcchheeeecc
Confidence 44555554433222222356666678899999998854 1234788876654333
No 92
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=20.95 E-value=1.3e+02 Score=24.88 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=28.6
Q ss_pred CcccEEEecccC-c---CchhHHHHHHHHHhcCCceEEeeCC
Q 039184 12 NKYDVFLSFKGE-D---TRDNFTSHLYSALSQKGIETFIDND 49 (158)
Q Consensus 12 ~~~DVFISys~~-D---~~~~fv~~L~~~L~~~gi~v~~d~~ 49 (158)
..++|+|---.+ | .-...+..|++.|++.|++|-+|.+
T Consensus 286 aP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~ 327 (477)
T 1hc7_A 286 APIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDDR 327 (477)
T ss_dssp CSCSEEEEECCCTTTHHHHHHHHHHHHHHHHHTTCCEEECCC
T ss_pred CCceEEEEEcCCcchHHHHHHHHHHHHHHHHhCCEEEEEeCC
Confidence 347898865443 2 2256789999999999999999874
No 93
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=20.83 E-value=2e+02 Score=19.43 Aligned_cols=62 Identities=10% Similarity=0.161 Sum_probs=32.2
Q ss_pred CCcc-chHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHHHHHHhhcCCceeeEEEeeCCccccc
Q 039184 52 RGDE-ISQSLVDAIEASSISIIIFSESYASSSWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRK 116 (158)
Q Consensus 52 ~G~~-~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPI~~~v~p~~v~~ 116 (158)
||.. +.......+..++.+|+|++..-..| ..++...++........-+|+++=....|+..
T Consensus 83 ~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s---~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 83 AGQERFNSITSAYYRSAKGIILVYDITKKET---FDDLPKWMKMIDKYASEDAELLLVGNKLDCET 145 (192)
T ss_dssp CCSGGGHHHHHHHHHHCSEEEEEEETTCHHH---HHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred CCcHHHHHHHHHHhcCCCEEEEEEECcCHHH---HHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 5543 44445677889999999998654332 22222222222111112245555455666543
No 94
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=20.60 E-value=1.1e+02 Score=21.68 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHhcCCceEEeeCCCCCC--ccchHHHHHHhHhcceEEE
Q 039184 27 DNFTSHLYSALSQKGIETFIDNDLKRG--DEISQSLVDAIEASSISII 72 (158)
Q Consensus 27 ~~fv~~L~~~L~~~gi~v~~d~~i~~G--~~~~~~i~~~i~~s~~~I~ 72 (158)
+.-...|...|++.|+.+..-. +.+- +.+.+.+.+++++++++|.
T Consensus 22 DtN~~~l~~~L~~~G~~v~~~~-iv~Dd~~~I~~~l~~a~~~~DlVit 68 (172)
T 3kbq_A 22 NTNAAFIGNFLTYHGYQVRRGF-VVMDDLDEIGWAFRVALEVSDLVVS 68 (172)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEE-EECSCHHHHHHHHHHHHHHCSEEEE
T ss_pred eHHHHHHHHHHHHCCCEEEEEE-EeCCCHHHHHHHHHHHHhcCCEEEE
Confidence 4566788899999999875322 2222 2455566667777775543
No 95
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=20.43 E-value=78 Score=14.65 Aligned_cols=14 Identities=29% Similarity=0.404 Sum_probs=10.1
Q ss_pred hhHHHHHHHHHHHh
Q 039184 133 PDRMQTWRIALTEA 146 (158)
Q Consensus 133 ~~~~~~W~~al~~i 146 (158)
-|-+++|.+-|.-.
T Consensus 7 vDSV~rWmeDLr~M 20 (22)
T 3ro3_B 7 VDSVQRWMEDLKLM 20 (26)
T ss_pred hHHHHHHHHHHHhh
Confidence 36689998877643
No 96
>2lpy_A Matrix protein P10; GAG, myristoylated, myristate, viral protein; HET: MYR; NMR {Mason-pfizer monkey virus}
Probab=20.29 E-value=50 Score=22.50 Aligned_cols=19 Identities=21% Similarity=0.499 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHhcCCceEE
Q 039184 27 DNFTSHLYSALSQKGIETF 45 (158)
Q Consensus 27 ~~fv~~L~~~L~~~gi~v~ 45 (158)
..|+..|...|+++|++|-
T Consensus 8 ~~fi~~Lk~~LK~rGvkV~ 26 (124)
T 2lpy_A 8 ERYVEQLKQALKTRGVKVK 26 (124)
T ss_dssp HHHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHHHHHHHCCeeec
Confidence 5799999999999999984
No 97
>4h0c_A Phospholipase/carboxylesterase; PSI-biology, midwest center for structural genomics, MCSG, hydrolase; HET: CIT; 1.62A {Dyadobacter fermentans}
Probab=20.04 E-value=1.7e+02 Score=20.57 Aligned_cols=34 Identities=15% Similarity=0.079 Sum_probs=26.3
Q ss_pred cccEEEecccCcCc--hhHHHHHHHHHhcCCceEEe
Q 039184 13 KYDVFLSFKGEDTR--DNFTSHLYSALSQKGIETFI 46 (158)
Q Consensus 13 ~~DVFISys~~D~~--~~fv~~L~~~L~~~gi~v~~ 46 (158)
..-||+.|-..|.. ......+.+.|++.|..+-+
T Consensus 151 ~~Pvl~~hG~~D~~vp~~~~~~~~~~L~~~g~~v~~ 186 (210)
T 4h0c_A 151 QTPVFISTGNPDPHVPVSRVQESVTILEDMNAAVSQ 186 (210)
T ss_dssp TCEEEEEEEESCTTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCceEEEecCCCCccCHHHHHHHHHHHHHCCCCeEE
Confidence 34599999888852 34568889999999988754
Done!