BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039186
(334 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 72.0 bits (175), Expect = 4e-13, Method: Composition-based stats.
Identities = 26/49 (53%), Positives = 35/49 (71%)
Query: 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188
+ECAVCL E D E R +P+C H FH +C+D WL +H+TCP+CR +V
Sbjct: 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 142 CAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPG 192
C VC+ +F + LR++P C+H FH C+D WL A+ TCP+CRA+ P G
Sbjct: 26 CVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPSSG 75
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 128 SAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANL 187
S+ E +G G LEC VC ++ E++R +P C+H+FH CI WL H++CPVCR +L
Sbjct: 5 SSGTEEHVGSG-LECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSL 62
Query: 188 VPQ 190
Q
Sbjct: 63 TGQ 65
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 52.4 bits (124), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 141 ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ-PGET 194
+C +CL+ + E +R +P C H+FH C+D WL + CP+CR ++ Q P E+
Sbjct: 16 KCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQLPSES 69
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 46.6 bits (109), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 142 CAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVC 183
CAVCL +F + L + P C H FH C+ WL CP+C
Sbjct: 18 CAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLC 58
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 142 CAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 189
C +C +E+ + +P C H FH C+ WL TCPVCR P
Sbjct: 43 CPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 141 ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188
EC +C++ D LI C+H F CID W H CP+CR +
Sbjct: 17 ECCICMDGRAD-----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 41.2 bits (95), Expect = 9e-04, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 142 CAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ 190
C C E E+ + + +C+H FH C+ W+ +N CP+C+ + V Q
Sbjct: 29 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 111 ARGLDDSV--INTFPT----FLYSAVRELKIGKGSLECAVCLNEFGD-EETLRLI--PKC 161
++ L DS+ NT PT + + IG G++ C +C++ + + + RLI +C
Sbjct: 38 SQCLRDSLKNANTCPTCRKKINHKRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTEC 97
Query: 162 SHVFHMDCIDAWLSAHNTCPVCRANL 187
HVF C+ L NTCP CR +
Sbjct: 98 GHVFCSQCLRDSLKNANTCPTCRKKI 123
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 135 IGKGSLECAVCLNEFGD-EETLRLI--PKCSHVFHMDCIDAWLSAHNTCPVCRANL 187
+G G++ C +C++ + + + RLI +C HVF C+ L NTCP CR +
Sbjct: 3 MGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 135 IGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANL 187
+ + L+C +C F + TL C+H F CI+ W+ CP+CR ++
Sbjct: 49 VLENELQCIICSEYFIEAVTLN----CAHSFCSYCINEWMKRKIECPICRKDI 97
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 135 IGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANL 187
+ + L+C +C F + TL C+H F CI+ W+ CP+CR ++
Sbjct: 60 VLENELQCIICSEYFIEAVTLN----CAHSFCSYCINEWMKRKIECPICRKDI 108
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 135 IGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANL 187
+ + L+C +C F + TL C+H F CI+ W+ CP+CR ++
Sbjct: 49 VLENELQCIICSEYFIEAVTLN----CAHSFCSYCINEWMKRKIECPICRKDI 97
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 138 GSLECAVCLNEFGD-EETLRLI--PKCSHVFHMDCIDAWLSAHNTCPVCRANL 187
G++ C +C++ + + + RLI +C HVF C+ L NTCP CR +
Sbjct: 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 35.8 bits (81), Expect = 0.034, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 14/55 (25%)
Query: 142 CAVCLNEFGD--------------EETLRLIPKCSHVFHMDCIDAWLSAHNTCPV 182
CA+C N D EE C+H FH CI WL CP+
Sbjct: 32 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 86
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 35.8 bits (81), Expect = 0.034, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 14/55 (25%)
Query: 142 CAVCLNEFGD--------------EETLRLIPKCSHVFHMDCIDAWLSAHNTCPV 182
CA+C N D EE C+H FH CI WL CP+
Sbjct: 40 CAICRNHIXDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 94
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 35.8 bits (81), Expect = 0.035, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVC 183
L C +C F +IP+CSH + CI +LS CP C
Sbjct: 23 LRCGICFEYF---NIAMIIPQCSHNYCSLCIRKFLSYKTQCPTC 63
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 35.8 bits (81), Expect = 0.036, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 14/55 (25%)
Query: 142 CAVCLNEFGD--------------EETLRLIPKCSHVFHMDCIDAWLSAHNTCPV 182
CA+C N D EE C+H FH CI WL CP+
Sbjct: 24 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 78
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 35.8 bits (81), Expect = 0.038, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 14/55 (25%)
Query: 142 CAVCLNEFGD--------------EETLRLIPKCSHVFHMDCIDAWLSAHNTCPV 182
CA+C N D EE C+H FH CI WL CP+
Sbjct: 42 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 96
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 138 GSLECAVCLNEFGD-EETLRLI--PKCSHVFHMDCIDAWLSAHNTCPVCRANL 187
G++ C +C++ + + + RLI +C HVF C+ L NTCP CR +
Sbjct: 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 35.4 bits (80), Expect = 0.044, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 14/55 (25%)
Query: 142 CAVCLNEFGD--------------EETLRLIPKCSHVFHMDCIDAWLSAHNTCPV 182
CA+C N D EE C+H FH CI WL CP+
Sbjct: 40 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 94
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCI-DAWLSAHNTCPVCRANLVPQPGETPSSF 198
L C +CL+ + T + +C H F DCI A S + CP CR LV + P
Sbjct: 55 LMCPICLDMLKNTMTTK---ECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPN 111
Query: 199 IPVLNPDVGSSRLE 212
L + SR E
Sbjct: 112 FDALISKIYPSRDE 125
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 35.0 bits (79), Expect = 0.055, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 14/55 (25%)
Query: 142 CAVCLNEFGD--------------EETLRLIPKCSHVFHMDCIDAWLSAHNTCPV 182
CA+C N D EE C+H FH CI WL CP+
Sbjct: 34 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 88
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 35.0 bits (79), Expect = 0.065, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCI-DAWLSAHNTCPVCRANLVPQPGETP 195
L C +CL+ + T + +C H F DCI A S + CP CR LV + P
Sbjct: 35 LMCPICLDMLKNTMTTK---ECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRP 88
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 35.0 bits (79), Expect = 0.066, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 140 LECAVCLNEFGD-EETLRLI--PKCSHVFHMDCIDAWLSAHNTCPVCRANL 187
+ C +C++ + + + RLI +C HVF C+ L NTCP CR +
Sbjct: 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCI-DAWLSAHNTCPVCRANLV 188
L C +CL+ + T + +C H F DCI A S + CP CR LV
Sbjct: 54 LMCPICLDMLKNTMTTK---ECLHRFCADCIITALRSGNKECPTCRKKLV 100
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 31/96 (32%), Gaps = 22/96 (22%)
Query: 101 GGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGD--------- 151
GG S G + + N + + V + CA+C N D
Sbjct: 18 GGRGTNSGAGKKRFEVKKWNAVALWAWDIVVD--------NCAICRNHIMDLCIECQANQ 69
Query: 152 -----EETLRLIPKCSHVFHMDCIDAWLSAHNTCPV 182
EE C+H FH CI WL CP+
Sbjct: 70 ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 105
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 31.2 bits (69), Expect = 0.82, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 142 CAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVC 183
C +CL + + + C H+ H C + L CP+C
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 31.2 bits (69), Expect = 0.87, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVC 183
L C +C F D T I +C H F CI +L CP+C
Sbjct: 12 LMCVLCGGYFIDATT---IIECLHSFCKTCIVRYLETSKYCPIC 52
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVC 183
L C +C F D T I +C H F CI +L CP+C
Sbjct: 16 LMCVLCGGYFIDATT---IIECLHSFCKTCIVRYLETSKYCPIC 56
>pdb|3LRQ|A Chain A, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|B Chain B, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|C Chain C, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|D Chain D, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d
Length = 100
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 142 CAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNT-CPVCRANL 187
C +C + D RL P CS + CI WL+ CP CRA L
Sbjct: 25 CFICXEKLRD---ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPL 68
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRA 185
GS C +CL + + + C H+ H C + L CP+C
Sbjct: 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSG 51
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVC 183
L C +C F D T I +C H F CI +L CP+C
Sbjct: 16 LMCVLCGGYFIDATT---IIECLHSFCKTCIVRYLETSKYCPIC 56
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 142 CAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRA 185
C +CL D + C H F CI W+ + TCP+C+
Sbjct: 8 CPICLE---DPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKV 48
>pdb|2AKJ|A Chain A, Structure Of Spinach Nitrite Reductase
Length = 608
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 170 IDAWLSAHNTCPVCRANL 187
+DAW+SA + PVC+A L
Sbjct: 322 LDAWVSAEDVVPVCKAML 339
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 9/58 (15%)
Query: 129 AVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNT---CPVC 183
A+RE+ LEC +C+ F +E+ + C H C++ L++ CP C
Sbjct: 11 ALREV------LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFC 62
>pdb|1V87|A Chain A, Solution Structure Of The Ring-H2 Finger Domain Of Mouse
Deltex Protein 2
Length = 114
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 158 IPKCSHVFHMDCIDAWLSAHNT-----CPVCRANLVPQPGETP 195
+ KCSH FH+ C+ A N CP C+ + G P
Sbjct: 58 LTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQP 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,285,951
Number of Sequences: 62578
Number of extensions: 357188
Number of successful extensions: 658
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 624
Number of HSP's gapped (non-prelim): 45
length of query: 334
length of database: 14,973,337
effective HSP length: 99
effective length of query: 235
effective length of database: 8,778,115
effective search space: 2062857025
effective search space used: 2062857025
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)