Query 039186
Match_columns 334
No_of_seqs 346 out of 2020
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 07:09:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039186.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039186hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.7 6.3E-18 1.4E-22 163.4 10.8 80 110-193 203-283 (348)
2 PF13639 zf-RING_2: Ring finge 99.4 3.4E-14 7.4E-19 98.4 2.1 44 140-184 1-44 (44)
3 PHA02929 N1R/p28-like protein; 99.3 2E-12 4.3E-17 120.2 5.7 77 111-188 147-227 (238)
4 PF12678 zf-rbx1: RING-H2 zinc 99.2 2.4E-12 5.3E-17 98.9 1.5 48 136-184 16-73 (73)
5 COG5540 RING-finger-containing 99.2 6.5E-12 1.4E-16 118.4 3.9 52 137-189 321-373 (374)
6 COG5243 HRD1 HRD ubiquitin lig 99.1 2.2E-10 4.8E-15 110.7 8.8 51 136-187 284-344 (491)
7 KOG0317 Predicted E3 ubiquitin 98.9 8.5E-10 1.8E-14 103.8 3.5 51 137-191 237-287 (293)
8 PLN03208 E3 ubiquitin-protein 98.9 1.3E-09 2.7E-14 98.1 3.1 49 137-189 16-80 (193)
9 cd00162 RING RING-finger (Real 98.9 2.1E-09 4.6E-14 72.6 3.4 44 141-187 1-45 (45)
10 PF13920 zf-C3HC4_3: Zinc fing 98.8 2.4E-09 5.2E-14 76.1 3.4 46 139-188 2-48 (50)
11 PF13923 zf-C3HC4_2: Zinc fing 98.8 2.4E-09 5.2E-14 72.2 3.2 39 142-183 1-39 (39)
12 KOG0320 Predicted E3 ubiquitin 98.8 1.4E-09 3E-14 95.9 2.5 52 137-190 129-180 (187)
13 KOG0823 Predicted E3 ubiquitin 98.8 1.5E-09 3.2E-14 99.4 2.8 52 135-190 43-97 (230)
14 PHA02926 zinc finger-like prot 98.8 5.2E-09 1.1E-13 95.5 4.0 52 137-188 168-230 (242)
15 PF12861 zf-Apc11: Anaphase-pr 98.8 5.6E-09 1.2E-13 82.1 3.5 51 138-188 20-82 (85)
16 COG5194 APC11 Component of SCF 98.6 7.3E-09 1.6E-13 79.9 0.9 52 139-190 20-83 (88)
17 PF00097 zf-C3HC4: Zinc finger 98.6 2.2E-08 4.7E-13 67.9 2.8 39 142-183 1-41 (41)
18 PF14634 zf-RING_5: zinc-RING 98.6 2.8E-08 6.2E-13 68.8 3.3 44 141-185 1-44 (44)
19 PF15227 zf-C3HC4_4: zinc fing 98.6 1.8E-08 3.9E-13 69.3 2.2 38 142-183 1-42 (42)
20 smart00504 Ubox Modified RING 98.6 5.1E-08 1.1E-12 71.8 3.3 45 140-188 2-46 (63)
21 KOG0802 E3 ubiquitin ligase [P 98.6 2.3E-08 5E-13 103.6 1.9 51 137-188 289-341 (543)
22 smart00184 RING Ring finger. E 98.5 6.3E-08 1.4E-12 63.0 3.1 38 142-183 1-39 (39)
23 KOG2930 SCF ubiquitin ligase, 98.4 3.7E-08 8E-13 79.6 0.0 68 122-189 29-109 (114)
24 TIGR00599 rad18 DNA repair pro 98.4 2E-07 4.4E-12 92.7 3.4 48 138-189 25-72 (397)
25 KOG0828 Predicted E3 ubiquitin 98.3 5.9E-07 1.3E-11 89.9 4.8 51 138-189 570-635 (636)
26 KOG1734 Predicted RING-contain 98.3 2.1E-07 4.6E-12 87.0 0.4 54 137-191 222-284 (328)
27 KOG1493 Anaphase-promoting com 98.3 7.6E-08 1.7E-12 73.7 -2.1 54 135-188 16-81 (84)
28 COG5574 PEX10 RING-finger-cont 98.3 4.4E-07 9.4E-12 84.8 2.4 50 138-191 214-265 (271)
29 KOG2164 Predicted E3 ubiquitin 98.2 1.1E-06 2.4E-11 88.6 4.2 48 139-190 186-238 (513)
30 smart00744 RINGv The RING-vari 98.0 3.8E-06 8.2E-11 59.7 2.9 42 141-184 1-49 (49)
31 KOG2177 Predicted E3 ubiquitin 98.0 2.2E-06 4.7E-11 78.7 1.8 44 137-184 11-54 (386)
32 PF04564 U-box: U-box domain; 98.0 3.4E-06 7.3E-11 64.7 2.4 47 139-189 4-51 (73)
33 TIGR00570 cdk7 CDK-activating 98.0 6E-06 1.3E-10 79.4 3.7 51 139-190 3-56 (309)
34 COG5219 Uncharacterized conser 98.0 2.5E-06 5.5E-11 90.8 1.2 52 137-188 1467-1523(1525)
35 PF13445 zf-RING_UBOX: RING-ty 97.9 7.5E-06 1.6E-10 56.7 2.9 38 142-181 1-43 (43)
36 PF11793 FANCL_C: FANCL C-term 97.9 2.9E-06 6.3E-11 64.7 0.5 50 139-188 2-66 (70)
37 KOG1785 Tyrosine kinase negati 97.8 1.1E-05 2.3E-10 79.3 2.9 47 140-190 370-418 (563)
38 KOG4265 Predicted E3 ubiquitin 97.8 1.3E-05 2.9E-10 77.8 2.9 49 137-189 288-337 (349)
39 KOG0804 Cytoplasmic Zn-finger 97.8 8.4E-06 1.8E-10 81.1 1.5 48 138-188 174-222 (493)
40 COG5432 RAD18 RING-finger-cont 97.8 1.1E-05 2.4E-10 76.3 2.0 46 139-188 25-70 (391)
41 KOG0287 Postreplication repair 97.7 9.2E-06 2E-10 78.3 1.2 47 139-189 23-69 (442)
42 KOG0827 Predicted E3 ubiquitin 97.7 1.2E-05 2.5E-10 78.8 1.8 48 140-187 5-55 (465)
43 KOG0825 PHD Zn-finger protein 97.7 8.8E-06 1.9E-10 85.4 -0.3 50 140-190 124-173 (1134)
44 KOG1039 Predicted E3 ubiquitin 97.6 2.4E-05 5.2E-10 76.7 2.2 51 138-188 160-221 (344)
45 KOG4172 Predicted E3 ubiquitin 97.5 2.5E-05 5.4E-10 56.4 0.6 46 139-188 7-54 (62)
46 KOG0311 Predicted E3 ubiquitin 97.5 1.3E-05 2.8E-10 77.8 -1.7 51 138-191 42-93 (381)
47 KOG4445 Uncharacterized conser 97.5 4.2E-05 9E-10 72.8 1.4 50 138-188 114-186 (368)
48 PF14835 zf-RING_6: zf-RING of 97.5 3.4E-05 7.4E-10 57.6 0.7 47 139-190 7-53 (65)
49 KOG0824 Predicted E3 ubiquitin 97.4 7.4E-05 1.6E-09 71.2 2.7 51 139-193 7-58 (324)
50 KOG0978 E3 ubiquitin ligase in 97.3 7.2E-05 1.6E-09 78.8 1.0 49 137-189 641-690 (698)
51 KOG1645 RING-finger-containing 97.3 0.00014 3.1E-09 71.8 2.9 48 139-186 4-54 (463)
52 KOG3970 Predicted E3 ubiquitin 97.0 0.00054 1.2E-08 63.0 3.6 54 137-192 48-109 (299)
53 KOG4159 Predicted E3 ubiquitin 96.9 0.00069 1.5E-08 67.8 3.8 50 137-190 82-131 (398)
54 KOG1941 Acetylcholine receptor 96.9 0.00043 9.3E-09 68.2 2.0 48 139-187 365-415 (518)
55 KOG0297 TNF receptor-associate 96.9 0.00044 9.5E-09 69.2 2.1 49 138-189 20-68 (391)
56 PF11789 zf-Nse: Zinc-finger o 96.7 0.001 2.2E-08 48.8 2.2 42 138-182 10-53 (57)
57 KOG0826 Predicted E3 ubiquitin 96.6 0.0027 5.9E-08 61.4 5.0 46 138-186 299-344 (357)
58 PF05883 Baculo_RING: Baculovi 96.4 0.0012 2.7E-08 56.3 1.0 39 137-176 24-68 (134)
59 KOG4692 Predicted E3 ubiquitin 96.2 0.0036 7.8E-08 61.1 3.2 48 137-188 420-467 (489)
60 KOG1002 Nucleotide excision re 96.1 0.002 4.4E-08 65.7 1.2 49 136-188 533-586 (791)
61 KOG2660 Locus-specific chromos 96.0 0.0017 3.6E-08 62.9 -0.2 49 138-189 14-62 (331)
62 KOG1428 Inhibitor of type V ad 96.0 0.0045 9.8E-08 69.2 3.0 52 136-188 3483-3544(3738)
63 KOG1952 Transcription factor N 95.9 0.0041 8.9E-08 66.5 2.3 52 136-187 188-246 (950)
64 KOG2879 Predicted E3 ubiquitin 95.7 0.0085 1.8E-07 56.8 3.2 50 136-188 236-287 (298)
65 COG5152 Uncharacterized conser 95.7 0.0044 9.6E-08 56.1 1.2 45 139-187 196-240 (259)
66 KOG4275 Predicted E3 ubiquitin 95.6 0.0027 5.9E-08 60.5 -0.5 42 139-188 300-342 (350)
67 KOG0801 Predicted E3 ubiquitin 95.4 0.005 1.1E-07 54.1 0.5 30 137-167 175-204 (205)
68 KOG1814 Predicted E3 ubiquitin 95.4 0.012 2.6E-07 58.5 3.1 38 137-175 182-219 (445)
69 KOG3039 Uncharacterized conser 95.3 0.015 3.3E-07 54.4 3.3 53 138-190 220-272 (303)
70 PHA03096 p28-like protein; Pro 95.3 0.0078 1.7E-07 57.8 1.5 36 140-175 179-218 (284)
71 COG5222 Uncharacterized conser 95.2 0.014 3.1E-07 55.9 2.9 46 140-188 275-322 (427)
72 PF10367 Vps39_2: Vacuolar sor 95.1 0.0095 2E-07 47.9 1.2 32 138-171 77-108 (109)
73 KOG1571 Predicted E3 ubiquitin 94.9 0.015 3.4E-07 56.9 2.4 44 138-188 304-347 (355)
74 KOG1813 Predicted E3 ubiquitin 94.8 0.012 2.7E-07 56.2 1.2 46 139-188 241-286 (313)
75 PF12906 RINGv: RING-variant d 94.7 0.027 5.8E-07 39.6 2.6 40 142-183 1-47 (47)
76 PHA02862 5L protein; Provision 94.7 0.024 5.2E-07 49.0 2.7 45 140-189 3-54 (156)
77 PF14570 zf-RING_4: RING/Ubox 94.7 0.03 6.4E-07 39.7 2.6 45 142-187 1-47 (48)
78 PF04641 Rtf2: Rtf2 RING-finge 94.5 0.04 8.6E-07 52.2 3.9 53 136-189 110-162 (260)
79 PHA02825 LAP/PHD finger-like p 94.1 0.046 1E-06 48.0 3.2 47 138-189 7-60 (162)
80 KOG4739 Uncharacterized protei 94.1 0.018 4E-07 53.6 0.8 45 141-189 5-49 (233)
81 PF10272 Tmpp129: Putative tra 93.6 0.087 1.9E-06 52.2 4.6 28 161-188 311-351 (358)
82 KOG2114 Vacuolar assembly/sort 93.2 0.043 9.3E-07 59.0 1.7 42 140-187 841-882 (933)
83 PF08746 zf-RING-like: RING-li 93.1 0.054 1.2E-06 37.4 1.5 41 142-183 1-43 (43)
84 KOG0827 Predicted E3 ubiquitin 92.7 0.0085 1.8E-07 59.2 -4.0 49 140-189 197-246 (465)
85 KOG4185 Predicted E3 ubiquitin 91.9 0.11 2.4E-06 49.7 2.5 48 139-187 3-54 (296)
86 KOG1001 Helicase-like transcri 91.7 0.079 1.7E-06 56.7 1.4 47 140-191 455-503 (674)
87 KOG2932 E3 ubiquitin ligase in 91.4 0.076 1.6E-06 51.3 0.9 42 141-187 92-133 (389)
88 KOG3268 Predicted E3 ubiquitin 90.9 0.11 2.4E-06 46.5 1.4 31 160-190 189-230 (234)
89 COG5175 MOT2 Transcriptional r 90.6 0.18 4E-06 49.2 2.6 51 138-189 13-65 (480)
90 PF14446 Prok-RING_1: Prokaryo 90.5 0.36 7.9E-06 35.0 3.4 40 139-182 5-44 (54)
91 PF07800 DUF1644: Protein of u 90.2 0.29 6.2E-06 43.1 3.2 36 139-175 2-47 (162)
92 KOG1100 Predicted E3 ubiquitin 89.9 0.18 4E-06 46.3 1.9 39 142-188 161-200 (207)
93 KOG0298 DEAD box-containing he 89.4 0.11 2.3E-06 58.4 -0.0 47 138-187 1152-1198(1394)
94 KOG2034 Vacuolar sorting prote 89.1 0.18 4E-06 54.6 1.5 35 138-174 816-850 (911)
95 PF14447 Prok-RING_4: Prokaryo 89.1 0.23 5E-06 36.1 1.5 44 140-189 8-51 (55)
96 KOG3161 Predicted E3 ubiquitin 88.7 0.12 2.7E-06 54.1 -0.1 44 139-185 11-54 (861)
97 KOG1940 Zn-finger protein [Gen 88.3 0.27 5.9E-06 47.1 1.9 47 138-185 157-204 (276)
98 COG5236 Uncharacterized conser 87.9 0.38 8.2E-06 47.3 2.6 65 118-188 42-108 (493)
99 PF03869 Arc: Arc-like DNA bin 87.2 0.33 7.1E-06 34.6 1.3 20 274-293 2-21 (50)
100 KOG0309 Conserved WD40 repeat- 86.9 0.33 7.1E-06 52.0 1.7 23 160-182 1047-1069(1081)
101 PF03854 zf-P11: P-11 zinc fin 86.7 0.38 8.3E-06 34.0 1.4 43 141-189 4-47 (50)
102 PF05290 Baculo_IE-1: Baculovi 86.0 0.58 1.3E-05 40.1 2.4 51 139-189 80-133 (140)
103 KOG3800 Predicted E3 ubiquitin 85.9 0.68 1.5E-05 44.5 3.1 48 141-188 2-51 (300)
104 COG5220 TFB3 Cdk activating ki 85.7 0.34 7.4E-06 45.4 1.0 50 139-188 10-64 (314)
105 KOG1812 Predicted E3 ubiquitin 85.1 0.35 7.6E-06 48.5 0.8 37 139-176 146-183 (384)
106 PF02439 Adeno_E3_CR2: Adenovi 84.8 2.1 4.5E-05 28.8 4.1 27 60-86 5-31 (38)
107 COG5183 SSM4 Protein involved 83.5 1.1 2.3E-05 48.6 3.5 54 137-190 10-68 (1175)
108 KOG3002 Zn finger protein [Gen 83.0 0.89 1.9E-05 44.1 2.6 45 138-188 47-91 (299)
109 KOG3899 Uncharacterized conser 82.5 0.63 1.4E-05 44.8 1.3 28 161-188 325-365 (381)
110 KOG4362 Transcriptional regula 82.2 0.38 8.3E-06 51.2 -0.3 47 139-189 21-70 (684)
111 KOG0802 E3 ubiquitin ligase [P 82.1 0.87 1.9E-05 47.6 2.3 47 136-190 476-522 (543)
112 KOG3053 Uncharacterized conser 81.9 0.59 1.3E-05 44.2 0.9 50 138-188 19-82 (293)
113 KOG2817 Predicted E3 ubiquitin 79.7 1.4 3E-05 44.0 2.7 45 138-183 333-380 (394)
114 KOG0269 WD40 repeat-containing 78.8 1.6 3.6E-05 46.8 3.0 41 140-182 780-820 (839)
115 PF01102 Glycophorin_A: Glycop 78.5 3.5 7.7E-05 34.9 4.4 30 59-88 65-94 (122)
116 KOG1609 Protein involved in mR 77.2 1.2 2.6E-05 42.4 1.4 49 139-188 78-134 (323)
117 PF11023 DUF2614: Protein of u 76.6 15 0.00033 30.6 7.4 29 160-194 74-102 (114)
118 KOG1829 Uncharacterized conser 75.0 1.1 2.3E-05 47.2 0.4 42 138-183 510-556 (580)
119 PF15102 TMEM154: TMEM154 prot 73.5 1.5 3.2E-05 38.2 0.8 7 169-175 129-135 (146)
120 PF13901 DUF4206: Domain of un 72.1 2.7 5.9E-05 38.3 2.3 41 138-184 151-196 (202)
121 PF07975 C1_4: TFIIH C1-like d 71.2 3.3 7.1E-05 29.7 2.0 42 142-184 2-50 (51)
122 KOG0825 PHD Zn-finger protein 71.2 2.2 4.9E-05 46.1 1.7 51 138-188 95-154 (1134)
123 PF02891 zf-MIZ: MIZ/SP-RING z 70.5 2.2 4.7E-05 30.3 1.0 43 140-186 3-50 (50)
124 PHA01513 mnt Mnt 70.4 2.9 6.4E-05 32.9 1.8 44 274-317 3-54 (82)
125 PF10571 UPF0547: Uncharacteri 69.3 2.6 5.7E-05 25.9 1.0 23 141-165 2-24 (26)
126 smart00132 LIM Zinc-binding do 68.2 4.5 9.8E-05 25.7 2.1 37 142-188 2-38 (39)
127 PF07213 DAP10: DAP10 membrane 67.6 17 0.00036 28.5 5.4 8 38-45 16-23 (79)
128 PF05393 Hum_adeno_E3A: Human 66.7 6.5 0.00014 31.4 3.0 26 73-98 43-68 (94)
129 KOG3005 GIY-YIG type nuclease 65.6 3.6 7.8E-05 39.2 1.7 49 139-187 182-242 (276)
130 KOG3113 Uncharacterized conser 64.6 5.5 0.00012 37.8 2.6 50 138-189 110-159 (293)
131 PLN02189 cellulose synthase 64.6 8.1 0.00018 43.3 4.4 52 139-190 34-89 (1040)
132 PLN02436 cellulose synthase A 64.1 8.8 0.00019 43.2 4.5 52 139-190 36-91 (1094)
133 PRK13415 flagella biosynthesis 63.9 31 0.00067 32.1 7.4 6 36-41 23-28 (219)
134 TIGR00622 ssl1 transcription f 63.9 7 0.00015 32.6 2.9 70 114-184 31-110 (112)
135 KOG1815 Predicted E3 ubiquitin 62.8 4.5 9.8E-05 41.2 1.9 37 137-176 68-104 (444)
136 KOG1245 Chromatin remodeling c 59.7 3.7 8.1E-05 47.6 0.7 51 137-188 1106-1160(1404)
137 COG5416 Uncharacterized integr 59.3 31 0.00068 28.0 5.7 24 55-78 57-80 (98)
138 KOG4718 Non-SMC (structural ma 59.0 4.3 9.4E-05 37.5 0.9 43 140-185 182-224 (235)
139 PLN02400 cellulose synthase 58.8 32 0.0007 39.0 7.6 52 139-190 36-91 (1085)
140 PHA02849 putative transmembran 57.5 21 0.00045 27.9 4.2 32 55-86 10-41 (82)
141 PF01708 Gemini_mov: Geminivir 57.1 12 0.00027 29.9 3.0 35 52-86 29-63 (91)
142 KOG2041 WD40 repeat protein [G 55.9 7.7 0.00017 41.9 2.2 51 134-188 1126-1185(1189)
143 PF00737 PsbH: Photosystem II 55.2 39 0.00084 24.3 5.0 34 48-81 13-46 (52)
144 PF06906 DUF1272: Protein of u 55.1 17 0.00036 26.7 3.2 46 141-191 7-55 (57)
145 PF14569 zf-UDP: Zinc-binding 54.8 20 0.00043 28.0 3.8 53 138-190 8-64 (80)
146 PF12273 RCR: Chitin synthesis 54.7 14 0.0003 31.1 3.3 10 66-75 9-18 (130)
147 KOG3039 Uncharacterized conser 53.7 8.3 0.00018 36.5 1.9 34 138-175 42-75 (303)
148 KOG3842 Adaptor protein Pellin 53.6 13 0.00028 36.4 3.2 51 137-188 339-414 (429)
149 KOG4367 Predicted Zn-finger pr 53.2 7.8 0.00017 39.5 1.7 33 138-174 3-35 (699)
150 KOG3579 Predicted E3 ubiquitin 52.0 7.2 0.00016 37.6 1.2 38 138-176 267-305 (352)
151 PF00412 LIM: LIM domain; Int 50.8 14 0.0003 25.9 2.3 38 142-189 1-38 (58)
152 smart00249 PHD PHD zinc finger 50.7 13 0.00028 24.3 2.0 31 141-172 1-31 (47)
153 PRK14584 hmsS hemin storage sy 50.5 23 0.00049 31.2 3.9 22 9-30 13-34 (153)
154 KOG1812 Predicted E3 ubiquitin 49.3 12 0.00026 37.6 2.3 46 137-183 304-351 (384)
155 PF00558 Vpu: Vpu protein; In 49.0 30 0.00065 27.2 4.0 15 107-121 53-67 (81)
156 PF06679 DUF1180: Protein of u 47.9 78 0.0017 28.1 7.0 9 19-27 11-19 (163)
157 KOG2068 MOT2 transcription fac 47.8 17 0.00037 35.7 3.1 50 139-188 249-298 (327)
158 PF15176 LRR19-TM: Leucine-ric 47.6 38 0.00083 27.7 4.6 25 59-83 15-39 (102)
159 KOG2066 Vacuolar assembly/sort 47.5 6.9 0.00015 42.5 0.3 43 139-183 784-830 (846)
160 PF00628 PHD: PHD-finger; Int 46.7 14 0.00029 25.5 1.7 42 142-184 2-49 (51)
161 KOG2927 Membrane component of 46.0 46 0.00099 33.1 5.7 23 9-31 179-201 (372)
162 PF13719 zinc_ribbon_5: zinc-r 45.7 13 0.00028 24.5 1.4 26 141-166 4-36 (37)
163 KOG2807 RNA polymerase II tran 45.7 18 0.00038 35.7 2.8 70 113-184 305-374 (378)
164 PRK02624 psbH photosystem II r 45.3 52 0.0011 24.6 4.5 35 47-81 15-49 (64)
165 PF15050 SCIMP: SCIMP protein 45.3 44 0.00094 28.3 4.6 20 74-93 22-41 (133)
166 PF04710 Pellino: Pellino; In 45.1 11 0.00023 38.0 1.3 67 117-187 255-338 (416)
167 PF01363 FYVE: FYVE zinc finge 44.9 9.9 0.00021 28.1 0.8 36 139-174 9-44 (69)
168 PLN02915 cellulose synthase A 44.4 26 0.00057 39.5 4.2 52 138-189 14-69 (1044)
169 PF05534 HicB: HicB family; I 43.7 15 0.00033 26.1 1.5 17 277-293 18-34 (51)
170 PF04277 OAD_gamma: Oxaloaceta 43.2 98 0.0021 23.3 6.2 23 63-85 10-32 (79)
171 PF13908 Shisa: Wnt and FGF in 43.0 12 0.00026 33.2 1.1 7 63-69 80-86 (179)
172 PLN00055 photosystem II reacti 42.9 58 0.0013 25.1 4.6 34 48-81 28-61 (73)
173 PF02060 ISK_Channel: Slow vol 41.7 46 0.001 28.4 4.3 33 58-90 42-74 (129)
174 PLN02638 cellulose synthase A 41.3 32 0.0007 38.9 4.3 51 139-189 17-71 (1079)
175 CHL00066 psbH photosystem II p 40.9 65 0.0014 24.8 4.6 35 47-81 27-61 (73)
176 PF13717 zinc_ribbon_4: zinc-r 39.9 20 0.00044 23.5 1.6 27 140-166 3-36 (36)
177 smart00647 IBR In Between Ring 39.8 17 0.00037 25.8 1.4 34 140-173 19-58 (64)
178 PHA02975 hypothetical protein; 39.2 83 0.0018 24.0 4.9 16 68-83 51-66 (69)
179 PF04710 Pellino: Pellino; In 39.1 10 0.00022 38.2 0.0 50 139-189 328-402 (416)
180 PF07948 Nairovirus_M: Nairovi 39.0 10 0.00022 39.5 0.0 26 18-43 579-604 (645)
181 cd00065 FYVE FYVE domain; Zinc 38.4 25 0.00054 24.7 2.0 35 140-174 3-37 (57)
182 COG5109 Uncharacterized conser 38.4 22 0.00049 34.8 2.2 45 138-183 335-382 (396)
183 PF08374 Protocadherin: Protoc 38.3 42 0.00091 31.2 3.9 34 53-88 33-66 (221)
184 PF01102 Glycophorin_A: Glycop 38.2 28 0.0006 29.5 2.5 37 54-92 58-94 (122)
185 PF02009 Rifin_STEVOR: Rifin/s 37.8 44 0.00096 32.5 4.2 10 64-73 262-271 (299)
186 PF12575 DUF3753: Protein of u 37.0 71 0.0015 24.6 4.3 8 75-82 62-69 (72)
187 smart00064 FYVE Protein presen 36.6 28 0.00061 25.5 2.1 36 139-174 10-45 (68)
188 PF10717 ODV-E18: Occlusion-de 36.3 43 0.00093 26.5 3.1 11 53-63 18-28 (85)
189 PF04423 Rad50_zn_hook: Rad50 35.6 15 0.00032 26.1 0.4 11 179-189 22-32 (54)
190 PRK12658 putative monovalent c 35.6 40 0.00087 28.6 3.1 9 5-13 22-30 (125)
191 PF06844 DUF1244: Protein of u 35.1 21 0.00046 27.0 1.2 12 164-175 11-22 (68)
192 PHA00617 ribbon-helix-helix do 35.0 23 0.0005 27.8 1.4 37 266-302 28-67 (80)
193 PF10497 zf-4CXXC_R1: Zinc-fin 34.9 38 0.00082 27.8 2.8 48 139-186 7-70 (105)
194 KOG2979 Protein involved in DN 34.0 24 0.00053 33.5 1.7 42 139-183 176-219 (262)
195 PF04216 FdhE: Protein involve 33.7 8.8 0.00019 36.7 -1.3 46 139-185 172-219 (290)
196 PHA03240 envelope glycoprotein 33.4 60 0.0013 30.3 4.0 29 61-89 214-242 (258)
197 PF01402 RHH_1: Ribbon-helix-h 33.1 15 0.00032 23.9 0.0 25 278-302 1-27 (39)
198 PHA02935 Hypothetical protein; 32.7 1.3E+02 0.0028 27.9 6.1 18 14-31 274-291 (349)
199 PHA02819 hypothetical protein; 32.2 1.3E+02 0.0028 23.1 5.0 16 68-83 53-68 (71)
200 COG3071 HemY Uncharacterized e 31.5 56 0.0012 33.0 3.8 9 22-30 6-14 (400)
201 PF12877 DUF3827: Domain of un 31.5 47 0.001 35.6 3.5 7 258-264 476-482 (684)
202 KOG0860 Synaptobrevin/VAMP-lik 30.9 63 0.0014 27.1 3.5 18 62-79 95-112 (116)
203 PHA02650 hypothetical protein; 30.9 94 0.002 24.4 4.1 17 68-84 56-72 (81)
204 PRK06231 F0F1 ATP synthase sub 30.5 31 0.00066 31.6 1.7 12 21-32 10-21 (205)
205 PF07204 Orthoreo_P10: Orthore 30.4 33 0.00072 27.7 1.7 13 34-46 15-27 (98)
206 PHA02657 hypothetical protein; 30.3 61 0.0013 25.8 3.1 29 55-85 22-50 (95)
207 PF03839 Sec62: Translocation 30.2 99 0.0021 28.9 5.0 10 9-18 100-109 (224)
208 PRK07946 putative monovalent c 29.9 68 0.0015 28.5 3.7 9 5-13 24-32 (163)
209 PF14979 TMEM52: Transmembrane 29.9 1.2E+02 0.0026 26.6 5.1 35 56-90 15-50 (154)
210 PF13771 zf-HC5HC2H: PHD-like 29.5 40 0.00087 25.9 2.0 34 138-172 35-68 (90)
211 PRK05978 hypothetical protein; 29.5 39 0.00085 29.5 2.1 27 162-193 42-68 (148)
212 PHA03163 hypothetical protein; 29.3 2.8E+02 0.0061 22.2 6.6 15 72-86 67-81 (92)
213 PF01034 Syndecan: Syndecan do 29.0 18 0.00039 27.2 -0.0 31 61-91 12-42 (64)
214 KOG3842 Adaptor protein Pellin 28.9 44 0.00096 32.9 2.5 47 134-186 285-350 (429)
215 PF13179 DUF4006: Family of un 28.8 1.1E+02 0.0024 23.1 4.1 25 60-84 15-39 (66)
216 PHA02844 putative transmembran 27.9 1.5E+02 0.0032 23.0 4.7 16 68-83 55-70 (75)
217 PF07649 C1_3: C1-like domain; 27.9 51 0.0011 20.4 1.9 29 141-170 2-30 (30)
218 PRK11486 flagellar biosynthesi 27.7 1.6E+02 0.0034 25.1 5.4 27 60-86 17-43 (124)
219 PHA03054 IMV membrane protein; 27.4 1.3E+02 0.0029 23.0 4.3 15 68-82 55-69 (72)
220 PF15330 SIT: SHP2-interacting 27.4 79 0.0017 26.1 3.5 22 64-85 3-24 (107)
221 PF07191 zinc-ribbons_6: zinc- 27.3 8.2 0.00018 29.5 -2.2 40 140-188 2-41 (70)
222 PF04277 OAD_gamma: Oxaloaceta 27.1 1.2E+02 0.0025 22.9 4.2 28 60-87 11-38 (79)
223 PF05568 ASFV_J13L: African sw 26.9 1.3E+02 0.0028 26.5 4.7 9 57-65 27-35 (189)
224 PF01299 Lamp: Lysosome-associ 26.8 39 0.00085 32.6 1.8 23 58-80 270-292 (306)
225 PF08114 PMP1_2: ATPase proteo 26.4 52 0.0011 22.6 1.8 14 72-85 21-34 (43)
226 PF15102 TMEM154: TMEM154 prot 26.4 15 0.00033 32.0 -0.9 6 52-57 52-57 (146)
227 PF14311 DUF4379: Domain of un 26.2 44 0.00096 23.7 1.6 26 157-183 30-55 (55)
228 KOG1815 Predicted E3 ubiquitin 26.1 23 0.00049 36.2 0.0 39 138-176 225-267 (444)
229 TIGR00686 phnA alkylphosphonat 26.1 41 0.00089 27.9 1.5 10 141-150 4-13 (109)
230 KOG2231 Predicted E3 ubiquitin 25.6 84 0.0018 34.0 4.1 48 141-192 2-56 (669)
231 PF09538 FYDLN_acid: Protein o 25.2 63 0.0014 26.7 2.5 12 179-190 28-39 (108)
232 PF07406 NICE-3: NICE-3 protei 25.1 54 0.0012 29.7 2.3 17 69-85 19-35 (186)
233 KOG4185 Predicted E3 ubiquitin 24.9 13 0.00027 35.5 -2.0 48 140-187 208-266 (296)
234 PF10577 UPF0560: Uncharacteri 24.5 79 0.0017 34.8 3.7 16 68-83 283-298 (807)
235 PF13994 PgaD: PgaD-like prote 24.4 1.3E+02 0.0027 25.7 4.3 20 11-30 14-33 (138)
236 PF07436 Curto_V3: Curtovirus 24.3 66 0.0014 25.0 2.2 17 16-32 1-17 (87)
237 PHA02692 hypothetical protein; 24.2 2.1E+02 0.0045 22.0 4.9 12 71-82 56-67 (70)
238 TIGR01478 STEVOR variant surfa 23.3 93 0.002 30.2 3.6 17 68-84 266-282 (295)
239 PF13260 DUF4051: Protein of u 23.1 1.1E+02 0.0025 21.7 3.0 24 67-90 8-31 (54)
240 PF03884 DUF329: Domain of unk 23.0 45 0.00098 24.4 1.1 11 179-189 4-14 (57)
241 PTZ00370 STEVOR; Provisional 22.6 97 0.0021 30.1 3.6 29 57-85 254-283 (296)
242 PRK04778 septation ring format 22.3 98 0.0021 32.6 3.9 24 61-84 3-26 (569)
243 cd07912 Tweety_N N-terminal do 22.3 1.9E+02 0.0041 29.6 5.8 16 28-43 7-22 (418)
244 PF13832 zf-HC5HC2H_2: PHD-zin 22.2 47 0.001 26.6 1.2 33 138-172 54-87 (110)
245 PRK04023 DNA polymerase II lar 22.1 52 0.0011 37.1 1.9 46 137-188 624-674 (1121)
246 PF09533 DUF2380: Predicted li 22.0 46 0.001 30.1 1.2 23 271-293 116-138 (188)
247 PF05808 Podoplanin: Podoplani 21.7 31 0.00066 30.6 0.0 30 59-88 130-159 (162)
248 PF07204 Orthoreo_P10: Orthore 21.6 1E+02 0.0022 25.0 3.0 36 38-73 22-57 (98)
249 PF09842 DUF2069: Predicted me 21.4 2.6E+02 0.0057 22.9 5.5 18 18-35 54-71 (109)
250 KOG1356 Putative transcription 21.4 40 0.00086 37.2 0.8 46 140-187 230-281 (889)
251 PHA02681 ORF089 virion membran 21.2 1.2E+02 0.0026 24.0 3.2 19 67-85 10-28 (92)
252 PF10577 UPF0560: Uncharacteri 21.2 1.1E+02 0.0025 33.6 4.1 28 62-89 273-301 (807)
253 PF10083 DUF2321: Uncharacteri 21.1 44 0.00096 29.5 0.9 44 143-189 8-51 (158)
254 COG3763 Uncharacterized protei 21.0 2.2E+02 0.0048 21.9 4.5 9 60-68 4-12 (71)
255 PF13908 Shisa: Wnt and FGF in 21.0 64 0.0014 28.5 1.9 23 56-78 77-99 (179)
256 PRK10220 hypothetical protein; 20.9 71 0.0015 26.6 2.0 10 141-150 5-14 (111)
257 PF03229 Alpha_GJ: Alphavirus 20.8 3.1E+02 0.0067 23.2 5.7 31 60-90 85-116 (126)
258 PF12877 DUF3827: Domain of un 20.8 42 0.00092 35.9 0.8 9 55-63 267-275 (684)
259 TIGR02269 Myxococcus xanthus p 20.8 52 0.0011 30.0 1.3 22 272-293 143-164 (211)
260 PF09451 ATG27: Autophagy-rela 20.4 82 0.0018 29.9 2.6 10 117-126 241-250 (268)
261 PF07423 DUF1510: Protein of u 20.2 77 0.0017 29.4 2.3 10 60-69 15-24 (217)
262 PLN02195 cellulose synthase A 20.1 1.1E+02 0.0024 34.5 3.8 51 138-188 5-59 (977)
263 PF09889 DUF2116: Uncharacteri 20.0 1.3E+02 0.0029 22.1 3.1 19 60-78 38-56 (59)
264 COG1545 Predicted nucleic-acid 20.0 61 0.0013 27.8 1.5 21 159-187 33-53 (140)
265 PRK11088 rrmA 23S rRNA methylt 20.0 69 0.0015 30.0 2.0 26 140-166 3-28 (272)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=6.3e-18 Score=163.35 Aligned_cols=80 Identities=30% Similarity=0.804 Sum_probs=67.4
Q ss_pred cCCCCCHHHHhhCCccchhhhHhhhcCCCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCC-Cccccccccc
Q 039186 110 GARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN-TCPVCRANLV 188 (334)
Q Consensus 110 ~~~gl~~~~i~~lp~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~-tCP~CR~~l~ 188 (334)
....+.+..+.++|...|....+... .+.|+||||+|..++.+|+|| |+|.||..||++||..+. .||+|++++.
T Consensus 203 ~~~r~~k~~l~~~p~~~f~~~~~~~~---~~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 203 RRNRLIKRLLKKLPVRTFTKGDDEDA---TDTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred hhhhhHHHHHhhCCcEEeccccccCC---CceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 34578899999999999988765432 269999999999999999999 999999999999997775 5999999886
Q ss_pred CCCCC
Q 039186 189 PQPGE 193 (334)
Q Consensus 189 ~~~~~ 193 (334)
...+.
T Consensus 279 ~~~~~ 283 (348)
T KOG4628|consen 279 TDSGS 283 (348)
T ss_pred CCCCC
Confidence 54443
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.44 E-value=3.4e-14 Score=98.40 Aligned_cols=44 Identities=55% Similarity=1.274 Sum_probs=40.0
Q ss_pred CcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccc
Q 039186 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCR 184 (334)
Q Consensus 140 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR 184 (334)
++|+||+++|..++.+..++ |+|.||.+||..|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 37999999999888888998 999999999999999999999997
No 3
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.31 E-value=2e-12 Score=120.17 Aligned_cols=77 Identities=31% Similarity=0.729 Sum_probs=59.9
Q ss_pred CCCCCHHHHhhCCccchhhhHhhhcCCCCCcCccccccccCCcc----eEEcCCCCCccchhHHHHHHhcCCCccccccc
Q 039186 111 ARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEET----LRLIPKCSHVFHMDCIDAWLSAHNTCPVCRAN 186 (334)
Q Consensus 111 ~~gl~~~~i~~lp~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~----~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~ 186 (334)
..+..+..++++|.+......... ...+.+|+||++.+.+++. +.+++.|+|.||..||.+|+..+.+||+||..
T Consensus 147 k~~~~~~~i~~lp~vl~~~e~~~~-~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~ 225 (238)
T PHA02929 147 KGKNYKKFLKTIPSVLSEYEKLYN-RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTP 225 (238)
T ss_pred hcchhHHHHHhcchhhhhhhhhhc-CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCE
Confidence 456789999999998765433222 2346799999999876541 23455699999999999999999999999998
Q ss_pred cc
Q 039186 187 LV 188 (334)
Q Consensus 187 l~ 188 (334)
+.
T Consensus 226 ~~ 227 (238)
T PHA02929 226 FI 227 (238)
T ss_pred ee
Confidence 75
No 4
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.23 E-value=2.4e-12 Score=98.95 Aligned_cols=48 Identities=40% Similarity=0.991 Sum_probs=36.9
Q ss_pred CCCCCcCccccccccCC----------cceEEcCCCCCccchhHHHHHHhcCCCccccc
Q 039186 136 GKGSLECAVCLNEFGDE----------ETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCR 184 (334)
Q Consensus 136 ~~~~~~C~ICl~~~~~~----------~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR 184 (334)
...++.|+||++.|.+. -.+.+.+ |+|.||..||.+||+.+.+||+||
T Consensus 16 ~~~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 16 DIADDNCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp SSCCSBETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cCcCCcccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence 33456799999999332 2344444 999999999999999999999997
No 5
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=6.5e-12 Score=118.39 Aligned_cols=52 Identities=44% Similarity=1.155 Sum_probs=46.9
Q ss_pred CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHh-cCCCcccccccccC
Q 039186 137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLS-AHNTCPVCRANLVP 189 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l~~ 189 (334)
..+.+|+|||+.|-..+.++.+| |.|.||..|+++|+. -+..||+||.++++
T Consensus 321 ~~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 34589999999999999999999 999999999999997 55679999999875
No 6
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=2.2e-10 Score=110.69 Aligned_cols=51 Identities=33% Similarity=1.031 Sum_probs=42.6
Q ss_pred CCCCCcCcccccc-ccCC---------cceEEcCCCCCccchhHHHHHHhcCCCcccccccc
Q 039186 136 GKGSLECAVCLNE-FGDE---------ETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANL 187 (334)
Q Consensus 136 ~~~~~~C~ICl~~-~~~~---------~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l 187 (334)
..++..|+||+++ |..+ .+...+| |||+||..|+..|++++++||+||.++
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCcc
Confidence 5567899999999 4433 2335667 999999999999999999999999995
No 7
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=8.5e-10 Score=103.79 Aligned_cols=51 Identities=31% Similarity=0.908 Sum_probs=43.5
Q ss_pred CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccCCC
Q 039186 137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQP 191 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~ 191 (334)
.....|.+||+...++.. +| |||+||+.||..|...+..||+||..+.+.+
T Consensus 237 ~a~~kC~LCLe~~~~pSa---Tp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSA---TP-CGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCCCceEEEecCCCCCCc---Cc-CcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 456789999999877654 45 9999999999999999999999999987543
No 8
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.86 E-value=1.3e-09 Score=98.07 Aligned_cols=49 Identities=33% Similarity=0.922 Sum_probs=39.6
Q ss_pred CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhc----------------CCCcccccccccC
Q 039186 137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA----------------HNTCPVCRANLVP 189 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~----------------~~tCP~CR~~l~~ 189 (334)
.+..+|+||++.+.++ .+++ |||.||..||..|+.. ...||+||.++..
T Consensus 16 ~~~~~CpICld~~~dP---VvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 16 GGDFDCNICLDQVRDP---VVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CCccCCccCCCcCCCc---EEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 3568999999998765 3355 9999999999999842 2479999999864
No 9
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.85 E-value=2.1e-09 Score=72.62 Aligned_cols=44 Identities=55% Similarity=1.326 Sum_probs=36.2
Q ss_pred cCccccccccCCcceEEcCCCCCccchhHHHHHHhc-CCCcccccccc
Q 039186 141 ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA-HNTCPVCRANL 187 (334)
Q Consensus 141 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l 187 (334)
+|+||++.+ .+.+.+.+ |+|.||..|+..|+.. +..||+|+..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 599999998 33454554 9999999999999987 67899998764
No 10
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.84 E-value=2.4e-09 Score=76.05 Aligned_cols=46 Identities=33% Similarity=0.920 Sum_probs=38.2
Q ss_pred CCcCccccccccCCcceEEcCCCCCc-cchhHHHHHHhcCCCccccccccc
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHV-FHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
+..|.||++...+ +.++| |||. ||..|+..|+.....||+||+++.
T Consensus 2 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 4689999998543 56677 9999 999999999999999999999875
No 11
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.83 E-value=2.4e-09 Score=72.24 Aligned_cols=39 Identities=41% Similarity=1.149 Sum_probs=32.3
Q ss_pred CccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccc
Q 039186 142 CAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVC 183 (334)
Q Consensus 142 C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~C 183 (334)
|+||++.+.+ .+..++ |||.||.+||.+|++.+..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence 8999999866 345665 99999999999999988899998
No 12
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.4e-09 Score=95.92 Aligned_cols=52 Identities=33% Similarity=0.859 Sum_probs=43.5
Q ss_pred CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccCC
Q 039186 137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ 190 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 190 (334)
++...|+|||+.+.+...+ ..+|||+||..||..-++....||+|++.|..+
T Consensus 129 ~~~~~CPiCl~~~sek~~v--sTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPV--STKCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred ccccCCCceecchhhcccc--ccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 4557899999999776543 237999999999999999999999999877644
No 13
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.5e-09 Score=99.44 Aligned_cols=52 Identities=31% Similarity=0.812 Sum_probs=41.1
Q ss_pred cCCCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcC---CCcccccccccCC
Q 039186 135 IGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH---NTCPVCRANLVPQ 190 (334)
Q Consensus 135 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~---~tCP~CR~~l~~~ 190 (334)
...+.++|.|||+.-+++. ++ .|||.||+.||.+||..+ +.||+|+..+...
T Consensus 43 ~~~~~FdCNICLd~akdPV---vT-lCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~ 97 (230)
T KOG0823|consen 43 RDGGFFDCNICLDLAKDPV---VT-LCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSID 97 (230)
T ss_pred CCCCceeeeeeccccCCCE---Ee-ecccceehHHHHHHHhhcCCCeeCCccccccccc
Confidence 3457889999999976653 33 399999999999999643 4699999988643
No 14
>PHA02926 zinc finger-like protein; Provisional
Probab=98.77 E-value=5.2e-09 Score=95.49 Aligned_cols=52 Identities=27% Similarity=0.844 Sum_probs=40.0
Q ss_pred CCCCcCccccccccCC-----cceEEcCCCCCccchhHHHHHHhcC------CCccccccccc
Q 039186 137 KGSLECAVCLNEFGDE-----ETLRLIPKCSHVFHMDCIDAWLSAH------NTCPVCRANLV 188 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~-----~~~~~lp~C~H~FH~~CI~~Wl~~~------~tCP~CR~~l~ 188 (334)
..+.+|+|||+..-++ ....+++.|+|.||..||..|...+ .+||+||..+.
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 3467999999986332 1234666799999999999999653 35999999875
No 15
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.76 E-value=5.6e-09 Score=82.11 Aligned_cols=51 Identities=37% Similarity=0.814 Sum_probs=38.7
Q ss_pred CCCcCccccccccC--------Ccc-eEEcCCCCCccchhHHHHHHhc---CCCccccccccc
Q 039186 138 GSLECAVCLNEFGD--------EET-LRLIPKCSHVFHMDCIDAWLSA---HNTCPVCRANLV 188 (334)
Q Consensus 138 ~~~~C~ICl~~~~~--------~~~-~~~lp~C~H~FH~~CI~~Wl~~---~~tCP~CR~~l~ 188 (334)
.++.|.||...|+. ++. ..+...|+|.||..||.+||.+ +..||+||+++.
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 36789999999852 111 1233469999999999999975 457999999875
No 16
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.64 E-value=7.3e-09 Score=79.88 Aligned_cols=52 Identities=31% Similarity=0.626 Sum_probs=38.9
Q ss_pred CCcCcccccccc-----------CCc-ceEEcCCCCCccchhHHHHHHhcCCCcccccccccCC
Q 039186 139 SLECAVCLNEFG-----------DEE-TLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ 190 (334)
Q Consensus 139 ~~~C~ICl~~~~-----------~~~-~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 190 (334)
-+.|+||...|. .++ .......|+|.||..||.+||..+..||+||+.+...
T Consensus 20 id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~ 83 (88)
T COG5194 20 IDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLA 83 (88)
T ss_pred cchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEe
Confidence 356777777662 222 2223335999999999999999999999999987644
No 17
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.63 E-value=2.2e-08 Score=67.88 Aligned_cols=39 Identities=44% Similarity=1.191 Sum_probs=33.2
Q ss_pred CccccccccCCcceEEcCCCCCccchhHHHHHHh--cCCCcccc
Q 039186 142 CAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLS--AHNTCPVC 183 (334)
Q Consensus 142 C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~--~~~tCP~C 183 (334)
|+||++.+.++. .+++ |+|.||..||.+|+. ....||+|
T Consensus 1 C~iC~~~~~~~~--~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILLP-CGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE--EETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC--EEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999987665 4566 999999999999998 45579998
No 18
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.62 E-value=2.8e-08 Score=68.81 Aligned_cols=44 Identities=30% Similarity=0.916 Sum_probs=37.7
Q ss_pred cCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccc
Q 039186 141 ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRA 185 (334)
Q Consensus 141 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~ 185 (334)
.|.||++.|.+....++++ |||+||..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4999999996666677776 9999999999999866678999984
No 19
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.62 E-value=1.8e-08 Score=69.33 Aligned_cols=38 Identities=34% Similarity=0.924 Sum_probs=29.2
Q ss_pred CccccccccCCcceEEcCCCCCccchhHHHHHHhcC----CCcccc
Q 039186 142 CAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH----NTCPVC 183 (334)
Q Consensus 142 C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~----~tCP~C 183 (334)
|+||++.|.++..+ .|||.|+..||..|++.. ..||.|
T Consensus 1 CpiC~~~~~~Pv~l----~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSL----PCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-----SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCcccc----CCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999888665 599999999999999644 369988
No 20
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.55 E-value=5.1e-08 Score=71.77 Aligned_cols=45 Identities=27% Similarity=0.596 Sum_probs=39.5
Q ss_pred CcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 140 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
+.|+||.+.+.++ .+++ |||+|+..||..|+..+.+||+|+.++.
T Consensus 2 ~~Cpi~~~~~~~P---v~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKDP---VILP-SGQTYERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCCC---EECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence 5799999999886 3455 9999999999999988889999998874
No 21
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=2.3e-08 Score=103.58 Aligned_cols=51 Identities=33% Similarity=0.916 Sum_probs=43.3
Q ss_pred CCCCcCccccccccCCcc--eEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186 137 KGSLECAVCLNEFGDEET--LRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~~--~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
..+..|+||++++..+.. ...+| |+|+||..|+..|++..++||+||..+.
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred hcCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhh
Confidence 346789999999987543 55666 9999999999999999999999999554
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.54 E-value=6.3e-08 Score=63.04 Aligned_cols=38 Identities=45% Similarity=1.254 Sum_probs=31.6
Q ss_pred CccccccccCCcceEEcCCCCCccchhHHHHHHh-cCCCcccc
Q 039186 142 CAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLS-AHNTCPVC 183 (334)
Q Consensus 142 C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-~~~tCP~C 183 (334)
|+||++.. .....++ |+|.||..|++.|+. .+..||+|
T Consensus 1 C~iC~~~~---~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 88999983 3455666 999999999999998 66679987
No 23
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=3.7e-08 Score=79.55 Aligned_cols=68 Identities=31% Similarity=0.552 Sum_probs=48.1
Q ss_pred CCccchhhhHhhhcCCCCCcCccccccc-------------cCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186 122 FPTFLYSAVRELKIGKGSLECAVCLNEF-------------GDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 122 lp~~~~~~~~~~~~~~~~~~C~ICl~~~-------------~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
|...+++.+.-...+-.-+.|+||..-+ ..++.+..-..|+|.||..||.+||+.+..||+|.++..
T Consensus 29 F~lKKWnAvAlWaWDi~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~ 108 (114)
T KOG2930|consen 29 FELKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWV 108 (114)
T ss_pred eEEeeeeeeeeeeeeeeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCccee
Confidence 4444555555444444567899988765 123333344469999999999999999999999988765
Q ss_pred C
Q 039186 189 P 189 (334)
Q Consensus 189 ~ 189 (334)
.
T Consensus 109 ~ 109 (114)
T KOG2930|consen 109 F 109 (114)
T ss_pred E
Confidence 4
No 24
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.37 E-value=2e-07 Score=92.68 Aligned_cols=48 Identities=40% Similarity=0.742 Sum_probs=41.5
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 189 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 189 (334)
....|+||++.|..+. +++ |+|.||..||..|+.....||+|+..+..
T Consensus 25 ~~l~C~IC~d~~~~Pv---itp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 25 TSLRCHICKDFFDVPV---LTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccCCCcCchhhhCcc---CCC-CCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 4679999999997764 455 99999999999999888889999998764
No 25
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=5.9e-07 Score=89.90 Aligned_cols=51 Identities=33% Similarity=0.938 Sum_probs=39.2
Q ss_pred CCCcCccccccccCCc--------------ceEEcCCCCCccchhHHHHHHhcCC-CcccccccccC
Q 039186 138 GSLECAVCLNEFGDEE--------------TLRLIPKCSHVFHMDCIDAWLSAHN-TCPVCRANLVP 189 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~--------------~~~~lp~C~H~FH~~CI~~Wl~~~~-tCP~CR~~l~~ 189 (334)
...+|+|||.++.--. ....+| |.|+||..|+.+|....+ .||+||.++++
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 3568999999974211 122446 999999999999998555 89999999863
No 26
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=2.1e-07 Score=86.95 Aligned_cols=54 Identities=30% Similarity=0.663 Sum_probs=43.2
Q ss_pred CCCCcCccccccccCCc-------ceEEcCCCCCccchhHHHHHH--hcCCCcccccccccCCC
Q 039186 137 KGSLECAVCLNEFGDEE-------TLRLIPKCSHVFHMDCIDAWL--SAHNTCPVCRANLVPQP 191 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~-------~~~~lp~C~H~FH~~CI~~Wl--~~~~tCP~CR~~l~~~~ 191 (334)
.++..|+||-..+.... .+..+. |+|+||..||..|- ..+++||.|+..++.+.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVdl~r 284 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKR 284 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhhHhh
Confidence 35678999999886554 455664 99999999999996 56779999998886543
No 27
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=7.6e-08 Score=73.72 Aligned_cols=54 Identities=28% Similarity=0.689 Sum_probs=38.6
Q ss_pred cCCCCCcCccccccccC--------Cc-ceEEcCCCCCccchhHHHHHHhc---CCCccccccccc
Q 039186 135 IGKGSLECAVCLNEFGD--------EE-TLRLIPKCSHVFHMDCIDAWLSA---HNTCPVCRANLV 188 (334)
Q Consensus 135 ~~~~~~~C~ICl~~~~~--------~~-~~~~lp~C~H~FH~~CI~~Wl~~---~~tCP~CR~~l~ 188 (334)
....+..|.||.-.|.. ++ ...++..|.|.||..||.+|+.. +..||+||+.+.
T Consensus 16 W~~~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 16 WDAPDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred EcCCCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 33455689999999842 22 11133359999999999999964 346999999864
No 28
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=4.4e-07 Score=84.77 Aligned_cols=50 Identities=32% Similarity=0.865 Sum_probs=40.4
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHH-HHhcCCC-cccccccccCCC
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDA-WLSAHNT-CPVCRANLVPQP 191 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~-Wl~~~~t-CP~CR~~l~~~~ 191 (334)
.+..|+||++....+ ..+| |||+||..||.. |-..+.- ||+||+...+++
T Consensus 214 ~d~kC~lC~e~~~~p---s~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 214 ADYKCFLCLEEPEVP---SCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred cccceeeeecccCCc---cccc-ccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 467899999996554 3455 999999999999 8766665 999999887653
No 29
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=1.1e-06 Score=88.62 Aligned_cols=48 Identities=25% Similarity=0.712 Sum_probs=37.9
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcC-----CCcccccccccCC
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH-----NTCPVCRANLVPQ 190 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~-----~tCP~CR~~l~~~ 190 (334)
+..|+|||+...-+. .+ .|||+||..||.++|... ..||+||..+..+
T Consensus 186 ~~~CPICL~~~~~p~---~t-~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~k 238 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPV---RT-NCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLK 238 (513)
T ss_pred CCcCCcccCCCCccc---cc-ccCceeeHHHHHHHHhhhcccCCccCCchhhhcccc
Confidence 678999999864432 23 599999999999998543 3699999988753
No 30
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.03 E-value=3.8e-06 Score=59.72 Aligned_cols=42 Identities=31% Similarity=0.934 Sum_probs=31.9
Q ss_pred cCccccccccCCcceEEcCCCC-----CccchhHHHHHHhc--CCCccccc
Q 039186 141 ECAVCLNEFGDEETLRLIPKCS-----HVFHMDCIDAWLSA--HNTCPVCR 184 (334)
Q Consensus 141 ~C~ICl~~~~~~~~~~~lp~C~-----H~FH~~CI~~Wl~~--~~tCP~CR 184 (334)
.|-||++.. .++...+.| |. |.+|..|+.+|+.. +.+||+|+
T Consensus 1 ~CrIC~~~~-~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEG-DEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCC-CCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 389999943 344445777 86 88999999999954 44899995
No 31
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=2.2e-06 Score=78.73 Aligned_cols=44 Identities=36% Similarity=0.908 Sum_probs=38.3
Q ss_pred CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccc
Q 039186 137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCR 184 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR 184 (334)
.+...|+||++.|.++ .++| |+|.||..||..++.....||.||
T Consensus 11 ~~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred cccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccC
Confidence 3567999999999988 5666 999999999999998545799999
No 32
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.00 E-value=3.4e-06 Score=64.70 Aligned_cols=47 Identities=26% Similarity=0.487 Sum_probs=36.2
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhc-CCCcccccccccC
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA-HNTCPVCRANLVP 189 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~ 189 (334)
.+.|+||.+.|.++..+ | |||.|...||..|+.. +.+||+|+.++..
T Consensus 4 ~f~CpIt~~lM~dPVi~---~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 4 EFLCPITGELMRDPVIL---P-SGHTYERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGB-TTTSSB-SSEEEE---T-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred ccCCcCcCcHhhCceeC---C-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 57899999999887544 4 9999999999999988 7899999988864
No 33
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.95 E-value=6e-06 Score=79.45 Aligned_cols=51 Identities=22% Similarity=0.548 Sum_probs=37.2
Q ss_pred CCcCccccccc-cCCc-ceEEcCCCCCccchhHHHHHH-hcCCCcccccccccCC
Q 039186 139 SLECAVCLNEF-GDEE-TLRLIPKCSHVFHMDCIDAWL-SAHNTCPVCRANLVPQ 190 (334)
Q Consensus 139 ~~~C~ICl~~~-~~~~-~~~~lp~C~H~FH~~CI~~Wl-~~~~tCP~CR~~l~~~ 190 (334)
+..|+||...- ..+. .+.+. .|||.||..||+..+ .....||.|+.++...
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~-~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFVRGSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCCcCCCCCccCcccccccC-CCCCcccHHHHHHHhcCCCCCCCCCCCccchh
Confidence 45799999963 3333 33344 499999999999966 4445799999888643
No 34
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.95 E-value=2.5e-06 Score=90.75 Aligned_cols=52 Identities=27% Similarity=0.842 Sum_probs=38.3
Q ss_pred CCCCcCccccccccC-Cc--ceEEcCCCCCccchhHHHHHHhc--CCCccccccccc
Q 039186 137 KGSLECAVCLNEFGD-EE--TLRLIPKCSHVFHMDCIDAWLSA--HNTCPVCRANLV 188 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~-~~--~~~~lp~C~H~FH~~CI~~Wl~~--~~tCP~CR~~l~ 188 (334)
.+-.+||||+..+.. +. .-...|.|.|.||..|+.+|+++ +.+||+||..++
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 356799999998751 11 11123459999999999999965 447999998764
No 35
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.93 E-value=7.5e-06 Score=56.67 Aligned_cols=38 Identities=37% Similarity=0.929 Sum_probs=22.0
Q ss_pred CccccccccCCc-ceEEcCCCCCccchhHHHHHHhcC----CCcc
Q 039186 142 CAVCLNEFGDEE-TLRLIPKCSHVFHMDCIDAWLSAH----NTCP 181 (334)
Q Consensus 142 C~ICl~~~~~~~-~~~~lp~C~H~FH~~CI~~Wl~~~----~tCP 181 (334)
|+||.+ |..++ .-.+|+ |||+|+.+||.+|+... -.||
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 86544 456787 99999999999999743 2576
No 36
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.90 E-value=2.9e-06 Score=64.70 Aligned_cols=50 Identities=30% Similarity=0.794 Sum_probs=23.7
Q ss_pred CCcCcccccccc-CCcc-eEEc--CCCCCccchhHHHHHHhc----C-------CCccccccccc
Q 039186 139 SLECAVCLNEFG-DEET-LRLI--PKCSHVFHMDCIDAWLSA----H-------NTCPVCRANLV 188 (334)
Q Consensus 139 ~~~C~ICl~~~~-~~~~-~~~l--p~C~H~FH~~CI~~Wl~~----~-------~tCP~CR~~l~ 188 (334)
+.+|.||++.+. .+.. ..+- +.|+..||..|+..||.. + .+||.|+++|.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 468999999876 3322 1222 369999999999999952 1 15999999875
No 37
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.82 E-value=1.1e-05 Score=79.34 Aligned_cols=47 Identities=28% Similarity=0.892 Sum_probs=39.4
Q ss_pred CcCccccccccCCcceEEcCCCCCccchhHHHHHHhc--CCCcccccccccCC
Q 039186 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA--HNTCPVCRANLVPQ 190 (334)
Q Consensus 140 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~--~~tCP~CR~~l~~~ 190 (334)
..|.||-+. ++.+++-| |||..|..|+..|-.+ .++||.||..+...
T Consensus 370 eLCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 370 ELCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 459999987 66788888 9999999999999843 56899999998643
No 38
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=1.3e-05 Score=77.81 Aligned_cols=49 Identities=29% Similarity=0.784 Sum_probs=40.9
Q ss_pred CCCCcCccccccccCCcceEEcCCCCCc-cchhHHHHHHhcCCCcccccccccC
Q 039186 137 KGSLECAVCLNEFGDEETLRLIPKCSHV-FHMDCIDAWLSAHNTCPVCRANLVP 189 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~~ 189 (334)
+...+|.|||++ ...+.++| |-|. .|..|-+..--.++.||+||+++.+
T Consensus 288 ~~gkeCVIClse---~rdt~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSE---SRDTVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecC---CcceEEec-chhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 446799999999 44466888 9997 9999999876677889999999864
No 39
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.78 E-value=8.4e-06 Score=81.10 Aligned_cols=48 Identities=35% Similarity=0.846 Sum_probs=38.4
Q ss_pred CCCcCccccccccCCcc-eEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186 138 GSLECAVCLNEFGDEET-LRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~-~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
+.-.|+|||+.+.+... ++... |.|.||..|+..|.. .+||+||....
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w~~--~scpvcR~~q~ 222 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKWWD--SSCPVCRYCQS 222 (493)
T ss_pred cCCCcchhHhhcCccccceeeee-cccccchHHHhhccc--CcChhhhhhcC
Confidence 34579999999977653 34444 999999999999965 48999998765
No 40
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.76 E-value=1.1e-05 Score=76.34 Aligned_cols=46 Identities=30% Similarity=0.635 Sum_probs=39.5
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
-+.|-||-+-|..+- .+ .|||.||.-||...|..+..||+||.+..
T Consensus 25 ~lrC~IC~~~i~ip~---~T-tCgHtFCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 25 MLRCRICDCRISIPC---ET-TCGHTFCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred HHHhhhhhheeecce---ec-ccccchhHHHHHHHhcCCCCCccccccHH
Confidence 457999999986653 33 49999999999999999999999998764
No 41
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.75 E-value=9.2e-06 Score=78.32 Aligned_cols=47 Identities=34% Similarity=0.797 Sum_probs=40.8
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 189 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 189 (334)
-+.|-||.+-|..+. ++| |+|.||.-||..+|..+..||.|+.++.+
T Consensus 23 lLRC~IC~eyf~ip~---itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 23 LLRCGICFEYFNIPM---ITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHHHhHHHHHhcCce---ecc-ccchHHHHHHHHHhccCCCCCceecccch
Confidence 467999999997653 456 99999999999999999999999988754
No 42
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=1.2e-05 Score=78.79 Aligned_cols=48 Identities=31% Similarity=0.968 Sum_probs=36.0
Q ss_pred CcCccccccccCCcceEEcCCCCCccchhHHHHHHhc---CCCcccccccc
Q 039186 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA---HNTCPVCRANL 187 (334)
Q Consensus 140 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~---~~tCP~CR~~l 187 (334)
-.|.||.+-+.....+.-+-.|||+||..|+.+|+.. +.+||.|+-.+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 4799996655555555555459999999999999964 35799998433
No 43
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.67 E-value=8.8e-06 Score=85.37 Aligned_cols=50 Identities=26% Similarity=0.557 Sum_probs=41.2
Q ss_pred CcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccCC
Q 039186 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ 190 (334)
Q Consensus 140 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 190 (334)
..|++|+..+.+.....-.+ |+|.||..||+.|-....+||+||..+...
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFGEV 173 (1134)
T ss_pred hhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhhee
Confidence 46888888887665544444 999999999999999999999999988654
No 44
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=2.4e-05 Score=76.66 Aligned_cols=51 Identities=27% Similarity=0.929 Sum_probs=40.5
Q ss_pred CCCcCccccccccCCc----ceEEcCCCCCccchhHHHHHH--hc-----CCCccccccccc
Q 039186 138 GSLECAVCLNEFGDEE----TLRLIPKCSHVFHMDCIDAWL--SA-----HNTCPVCRANLV 188 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~----~~~~lp~C~H~FH~~CI~~Wl--~~-----~~tCP~CR~~l~ 188 (334)
.+.+|.||++...+.. ...++|+|.|.||..||..|- .. .+.||.||....
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 4678999999986543 245678899999999999997 33 357999998764
No 45
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=2.5e-05 Score=56.37 Aligned_cols=46 Identities=33% Similarity=0.687 Sum_probs=34.3
Q ss_pred CCcCccccccccCCcceEEcCCCCCc-cchhHHHHHH-hcCCCccccccccc
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHV-FHMDCIDAWL-SAHNTCPVCRANLV 188 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~Wl-~~~~tCP~CR~~l~ 188 (334)
.++|.||++.-.+.. +- .|||. .|.+|-.+-+ ..+..||+||+++.
T Consensus 7 ~dECTICye~pvdsV---lY-tCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPVDSV---LY-TCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcchHH---HH-HcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 479999999843332 22 49997 8999966554 47889999999874
No 46
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=1.3e-05 Score=77.76 Aligned_cols=51 Identities=33% Similarity=0.697 Sum_probs=41.1
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHh-cCCCcccccccccCCC
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLS-AHNTCPVCRANLVPQP 191 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l~~~~ 191 (334)
.++.|+|||+-++.. +.++.|.|-||.+||..-+. .+++||.||+.+....
T Consensus 42 ~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skr 93 (381)
T KOG0311|consen 42 IQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKR 93 (381)
T ss_pred hhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccc
Confidence 467899999998553 34457999999999999885 5668999999887543
No 47
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.47 E-value=4.2e-05 Score=72.82 Aligned_cols=50 Identities=28% Similarity=0.835 Sum_probs=41.8
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHh-----------------------cCCCccccccccc
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLS-----------------------AHNTCPVCRANLV 188 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-----------------------~~~tCP~CR~~l~ 188 (334)
....|.|||.-|.+++....++ |.|.||..|+.++|. ....||+||..|.
T Consensus 114 p~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 3467999999999999887887 999999999998874 1225999999885
No 48
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.47 E-value=3.4e-05 Score=57.61 Aligned_cols=47 Identities=30% Similarity=0.761 Sum_probs=24.7
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccCC
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ 190 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 190 (334)
...|++|.+.+..+..+ ..|.|+||..||..-+.. .||+|+.+-..+
T Consensus 7 lLrCs~C~~~l~~pv~l---~~CeH~fCs~Ci~~~~~~--~CPvC~~Paw~q 53 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCL---GGCEHIFCSSCIRDCIGS--ECPVCHTPAWIQ 53 (65)
T ss_dssp TTS-SSS-S--SS-B------SSS--B-TTTGGGGTTT--B-SSS--B-S-S
T ss_pred hcCCcHHHHHhcCCcee---ccCccHHHHHHhHHhcCC--CCCCcCChHHHH
Confidence 46899999999776433 369999999999886654 499998887543
No 49
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=7.4e-05 Score=71.20 Aligned_cols=51 Identities=27% Similarity=0.459 Sum_probs=39.6
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHh-cCCCcccccccccCCCCC
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLS-AHNTCPVCRANLVPQPGE 193 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l~~~~~~ 193 (334)
..+|+||+....-+ ..++ |+|.||..||..-.. ...+|++||.+++..-..
T Consensus 7 ~~eC~IC~nt~n~P---v~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~ 58 (324)
T KOG0824|consen 7 KKECLICYNTGNCP---VNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDF 58 (324)
T ss_pred CCcceeeeccCCcC---cccc-ccchhhhhhhcchhhcCCCCCceecCCCCcchhc
Confidence 45899999997655 3444 999999999998664 455799999999764433
No 50
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=7.2e-05 Score=78.83 Aligned_cols=49 Identities=35% Similarity=0.805 Sum_probs=38.3
Q ss_pred CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhc-CCCcccccccccC
Q 039186 137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA-HNTCPVCRANLVP 189 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~ 189 (334)
.+-..|++|-...++- . +++|+|+||..||..-+.. ...||.|-+.+.+
T Consensus 641 K~~LkCs~Cn~R~Kd~---v-I~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDA---V-ITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred HhceeCCCccCchhhH---H-HHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 4567899999765443 2 3379999999999999965 4579999888764
No 51
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.00014 Score=71.75 Aligned_cols=48 Identities=27% Similarity=0.859 Sum_probs=36.2
Q ss_pred CCcCccccccccCC-cceEEcCCCCCccchhHHHHHHhc--CCCccccccc
Q 039186 139 SLECAVCLNEFGDE-ETLRLIPKCSHVFHMDCIDAWLSA--HNTCPVCRAN 186 (334)
Q Consensus 139 ~~~C~ICl~~~~~~-~~~~~lp~C~H~FH~~CI~~Wl~~--~~tCP~CR~~ 186 (334)
...|+||++.+.-. +.....+.|+|.|-.+||+.||.. ...||.|...
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence 46899999998743 333344569999999999999952 2259999654
No 52
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.00054 Score=63.01 Aligned_cols=54 Identities=26% Similarity=0.686 Sum_probs=45.0
Q ss_pred CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhc--------CCCcccccccccCCCC
Q 039186 137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA--------HNTCPVCRANLVPQPG 192 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~--------~~tCP~CR~~l~~~~~ 192 (334)
+....|..|-..+..++.+|+ .|-|+||++|+.+|-.. ...||.|-.+++++..
T Consensus 48 DY~pNC~LC~t~La~gdt~RL--vCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~N 109 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGDTTRL--VCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPIN 109 (299)
T ss_pred CCCCCCceeCCccccCcceee--hhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCcc
Confidence 456689999999999999988 49999999999999742 2369999999986543
No 53
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.00069 Score=67.78 Aligned_cols=50 Identities=34% Similarity=0.843 Sum_probs=42.7
Q ss_pred CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccCC
Q 039186 137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ 190 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 190 (334)
..+++|.||+..+.++... | |||.||..||++-+.....||.||..+.+.
T Consensus 82 ~sef~c~vc~~~l~~pv~t---p-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~ 131 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVT---P-CGHSFCLECLDRSLDQETECPLCRDELVEL 131 (398)
T ss_pred cchhhhhhhHhhcCCCccc---c-ccccccHHHHHHHhccCCCCcccccccccc
Confidence 4678999999998777544 5 999999999999888777899999999863
No 54
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.92 E-value=0.00043 Score=68.15 Aligned_cols=48 Identities=38% Similarity=0.949 Sum_probs=39.7
Q ss_pred CCcCcccccccc-CCcceEEcCCCCCccchhHHHHHHhcCC--Ccccccccc
Q 039186 139 SLECAVCLNEFG-DEETLRLIPKCSHVFHMDCIDAWLSAHN--TCPVCRANL 187 (334)
Q Consensus 139 ~~~C~ICl~~~~-~~~~~~~lp~C~H~FH~~CI~~Wl~~~~--tCP~CR~~l 187 (334)
+..|..|-+.+. .++.+..+| |.|+||..|+..+|.++. +||.||+-.
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Crklr 415 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRKLR 415 (518)
T ss_pred hhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 578999999885 455778888 999999999999996654 799999544
No 55
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.91 E-value=0.00044 Score=69.22 Aligned_cols=49 Identities=35% Similarity=0.781 Sum_probs=42.2
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 189 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 189 (334)
.+..|++|...+.++... . .|||.||..|+..|+..+..||.|+..+..
T Consensus 20 ~~l~C~~C~~vl~~p~~~--~-~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~ 68 (391)
T KOG0297|consen 20 ENLLCPICMSVLRDPVQT--T-TCGHRFCAGCLLESLSNHQKCPVCRQELTQ 68 (391)
T ss_pred ccccCccccccccCCCCC--C-CCCCcccccccchhhccCcCCcccccccch
Confidence 467899999999887653 2 599999999999999999999999887754
No 56
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.72 E-value=0.001 Score=48.79 Aligned_cols=42 Identities=33% Similarity=0.698 Sum_probs=27.4
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhc--CCCccc
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA--HNTCPV 182 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~--~~tCP~ 182 (334)
-...|+|.+..|+++. +-. .|+|+|-++.|.+|+.. ...||+
T Consensus 10 ~~~~CPiT~~~~~~PV--~s~-~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPV--KSK-KCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEE--EES-SS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCc--CcC-CCCCeecHHHHHHHHHhcCCCCCCC
Confidence 3578999999998763 333 59999999999999943 336998
No 57
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.0027 Score=61.38 Aligned_cols=46 Identities=26% Similarity=0.512 Sum_probs=37.0
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccc
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRAN 186 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~ 186 (334)
....|+||+.....+..+.. -|-+||..||-.++..++.||+=-.+
T Consensus 299 ~~~~CpvClk~r~Nptvl~v---SGyVfCY~Ci~~Yv~~~~~CPVT~~p 344 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLEV---SGYVFCYPCIFSYVVNYGHCPVTGYP 344 (357)
T ss_pred ccccChhHHhccCCCceEEe---cceEEeHHHHHHHHHhcCCCCccCCc
Confidence 34689999999877655422 59999999999999999999985433
No 58
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.39 E-value=0.0012 Score=56.28 Aligned_cols=39 Identities=18% Similarity=0.645 Sum_probs=30.6
Q ss_pred CCCCcCccccccccCCcceEEcCCCC------CccchhHHHHHHhc
Q 039186 137 KGSLECAVCLNEFGDEETLRLIPKCS------HVFHMDCIDAWLSA 176 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~~~~~lp~C~------H~FH~~CI~~Wl~~ 176 (334)
....+|+||++.+...+-+..++ |+ |.||.+|+.+|-..
T Consensus 24 ~~~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~~~ 68 (134)
T PF05883_consen 24 RCTVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWRRE 68 (134)
T ss_pred ccCeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHHhh
Confidence 34679999999998845555565 66 89999999999433
No 59
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.0036 Score=61.12 Aligned_cols=48 Identities=23% Similarity=0.555 Sum_probs=40.9
Q ss_pred CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186 137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
.++..|+||+.. +......| |+|.-|..||.+-+.+.+.|=.|++.+.
T Consensus 420 sEd~lCpICyA~---pi~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAG---PINAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecc---cchhhccC-CCCchHHHHHHHHHhcCCeeeEecceee
Confidence 467789999976 55556677 9999999999999999999999988764
No 60
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.14 E-value=0.002 Score=65.65 Aligned_cols=49 Identities=35% Similarity=0.756 Sum_probs=38.1
Q ss_pred CCCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHh-----cCCCccccccccc
Q 039186 136 GKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLS-----AHNTCPVCRANLV 188 (334)
Q Consensus 136 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-----~~~tCP~CR~~l~ 188 (334)
+++..+|.+|-++-++.... .|.|.||.-||.++.. .+.+||+|...+.
T Consensus 533 nk~~~~C~lc~d~aed~i~s----~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAEDYIES----SCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred ccCceeecccCChhhhhHhh----hhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 35678999999986554333 6999999999999874 3458999977664
No 61
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.00 E-value=0.0017 Score=62.86 Aligned_cols=49 Identities=27% Similarity=0.635 Sum_probs=41.5
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 189 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 189 (334)
....|.+|-.-|-+..++ . .|-|.||+.||...|...++||.|...+-.
T Consensus 14 ~~itC~LC~GYliDATTI--~-eCLHTFCkSCivk~l~~~~~CP~C~i~ih~ 62 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTI--T-ECLHTFCKSCIVKYLEESKYCPTCDIVIHK 62 (331)
T ss_pred cceehhhccceeecchhH--H-HHHHHHHHHHHHHHHHHhccCCccceeccC
Confidence 456899999998776654 3 599999999999999999999999887753
No 62
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=95.99 E-value=0.0045 Score=69.16 Aligned_cols=52 Identities=25% Similarity=0.666 Sum_probs=38.7
Q ss_pred CCCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcC-----C-----Cccccccccc
Q 039186 136 GKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH-----N-----TCPVCRANLV 188 (334)
Q Consensus 136 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~-----~-----tCP~CR~~l~ 188 (334)
.+.++.|.||..+--.......+. |+|+||..|...-|..+ - +||+|+.++.
T Consensus 3483 QD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred cccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 346778999998865555555664 99999999998766432 1 6999998774
No 63
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=95.92 E-value=0.0041 Score=66.51 Aligned_cols=52 Identities=27% Similarity=0.778 Sum_probs=41.6
Q ss_pred CCCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCC-------Ccccccccc
Q 039186 136 GKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN-------TCPVCRANL 187 (334)
Q Consensus 136 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~-------tCP~CR~~l 187 (334)
..+..+|.||++.+.....++-...|.|+||..||..|-.+.. .||.|....
T Consensus 188 ~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 188 SNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred hcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 4567899999999988777766667999999999999974321 599998544
No 64
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.0085 Score=56.77 Aligned_cols=50 Identities=30% Similarity=0.578 Sum_probs=37.4
Q ss_pred CCCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcC--CCccccccccc
Q 039186 136 GKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH--NTCPVCRANLV 188 (334)
Q Consensus 136 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~--~tCP~CR~~l~ 188 (334)
...+.+|++|-+.-..+-. +. +|+|+||.-||..=+... -+||.|-.+..
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~--~~-~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHV--IG-KCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCCCee--ec-cccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 3467899999988544432 33 499999999999876533 58999977765
No 65
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.69 E-value=0.0044 Score=56.14 Aligned_cols=45 Identities=20% Similarity=0.536 Sum_probs=38.5
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccc
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANL 187 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l 187 (334)
.+.|.||-.+|+.+... .|||.||..|...-+....+|-+|.+..
T Consensus 196 PF~C~iCKkdy~spvvt----~CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 196 PFLCGICKKDYESPVVT----ECGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred ceeehhchhhccchhhh----hcchhHHHHHHHHHhccCCcceecchhh
Confidence 56899999999887654 6999999999998888888999997654
No 66
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.0027 Score=60.50 Aligned_cols=42 Identities=29% Similarity=0.774 Sum_probs=33.2
Q ss_pred CCcCccccccccCCcceEEcCCCCCc-cchhHHHHHHhcCCCccccccccc
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHV-FHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
...|+||++. +..+..|+ |||. -|..|-... ..||+||+.+.
T Consensus 300 ~~LC~ICmDa---P~DCvfLe-CGHmVtCt~CGkrm----~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDA---PRDCVFLE-CGHMVTCTKCGKRM----NECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcC---CcceEEee-cCcEEeehhhcccc----ccCchHHHHHH
Confidence 4569999998 56677887 9994 888996653 37999998775
No 67
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.005 Score=54.10 Aligned_cols=30 Identities=27% Similarity=0.781 Sum_probs=27.1
Q ss_pred CCCCcCccccccccCCcceEEcCCCCCccch
Q 039186 137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHM 167 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~ 167 (334)
+...||.|||++++.++++..+| |-.+||+
T Consensus 175 ddkGECvICLEdL~~GdtIARLP-CLCIYHK 204 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTIARLP-CLCIYHK 204 (205)
T ss_pred ccCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence 34569999999999999999999 9999996
No 68
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.012 Score=58.54 Aligned_cols=38 Identities=26% Similarity=0.873 Sum_probs=33.6
Q ss_pred CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHh
Q 039186 137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLS 175 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~ 175 (334)
.....|.||+++.........+| |+|+||+.|+..++.
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~ 219 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFT 219 (445)
T ss_pred hhcccceeeehhhcCcceeeecc-cchHHHHHHHHHHHH
Confidence 45678999999988778888898 999999999999984
No 69
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.31 E-value=0.015 Score=54.37 Aligned_cols=53 Identities=15% Similarity=0.322 Sum_probs=46.1
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccCC
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ 190 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 190 (334)
....|+||.+.+.....+..|.+|||+|+.+|.++.+..-..||+|-.++.+.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDR 272 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCccc
Confidence 34679999999998888877877999999999999998889999998877643
No 70
>PHA03096 p28-like protein; Provisional
Probab=95.30 E-value=0.0078 Score=57.82 Aligned_cols=36 Identities=22% Similarity=0.676 Sum_probs=29.0
Q ss_pred CcCccccccccCCc----ceEEcCCCCCccchhHHHHHHh
Q 039186 140 LECAVCLNEFGDEE----TLRLIPKCSHVFHMDCIDAWLS 175 (334)
Q Consensus 140 ~~C~ICl~~~~~~~----~~~~lp~C~H~FH~~CI~~Wl~ 175 (334)
..|.||++...... .--+++.|.|.||..||..|-.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~ 218 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMT 218 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHH
Confidence 57999999875432 3346778999999999999974
No 71
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.21 E-value=0.014 Score=55.93 Aligned_cols=46 Identities=28% Similarity=0.734 Sum_probs=35.6
Q ss_pred CcCccccccccCCcceEEcCCCCCccchhHHHHHH-hcCCCccccc-cccc
Q 039186 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWL-SAHNTCPVCR-ANLV 188 (334)
Q Consensus 140 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl-~~~~tCP~CR-~~l~ 188 (334)
+.|+.|-.....+.. +|.|+|.||.+||..-| .+...||.|. .++.
T Consensus 275 LkCplc~~Llrnp~k---T~cC~~~fc~eci~~al~dsDf~CpnC~rkdvl 322 (427)
T COG5222 275 LKCPLCHCLLRNPMK---TPCCGHTFCDECIGTALLDSDFKCPNCSRKDVL 322 (427)
T ss_pred ccCcchhhhhhCccc---CccccchHHHHHHhhhhhhccccCCCcccccch
Confidence 789999888766543 36799999999999877 5667899994 4443
No 72
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.11 E-value=0.0095 Score=47.89 Aligned_cols=32 Identities=38% Similarity=0.935 Sum_probs=25.8
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHH
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCID 171 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~ 171 (334)
....|++|-..+..+ .....| |||+||..|+.
T Consensus 77 ~~~~C~vC~k~l~~~-~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNS-VFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCc-eEEEeC-CCeEEeccccc
Confidence 356799999999774 455666 99999999975
No 73
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.015 Score=56.89 Aligned_cols=44 Identities=34% Similarity=0.708 Sum_probs=31.9
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
..+.|.||+++..+ ...+| |||+-| |+.-- +...+||+||..+.
T Consensus 304 ~p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs-~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCS-KHLPQCPVCRQRIR 347 (355)
T ss_pred CCCceEEecCCccc---eeeec-CCcEEE--chHHH-hhCCCCchhHHHHH
Confidence 45689999999655 55666 999966 66553 22345999998775
No 74
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=0.012 Score=56.22 Aligned_cols=46 Identities=24% Similarity=0.465 Sum_probs=39.1
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
.+.|-||...|..+... +|+|.||..|-..=+.....|++|-+..-
T Consensus 241 Pf~c~icr~~f~~pVvt----~c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVT----KCGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred Cccccccccccccchhh----cCCceeehhhhccccccCCcceecccccc
Confidence 45699999999888655 79999999998888888889999977653
No 75
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=94.73 E-value=0.027 Score=39.57 Aligned_cols=40 Identities=30% Similarity=1.009 Sum_probs=26.7
Q ss_pred CccccccccCCcceEEcCCCC--C---ccchhHHHHHHh--cCCCcccc
Q 039186 142 CAVCLNEFGDEETLRLIPKCS--H---VFHMDCIDAWLS--AHNTCPVC 183 (334)
Q Consensus 142 C~ICl~~~~~~~~~~~lp~C~--H---~FH~~CI~~Wl~--~~~tCP~C 183 (334)
|-||++.-.++..+ +.| |. - ..|..|+.+|+. .+.+|++|
T Consensus 1 CrIC~~~~~~~~~l-i~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPL-ISP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-E-E-S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCce-ecc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 67999987766633 445 65 2 679999999996 44579987
No 76
>PHA02862 5L protein; Provisional
Probab=94.71 E-value=0.024 Score=49.01 Aligned_cols=45 Identities=20% Similarity=0.628 Sum_probs=33.5
Q ss_pred CcCccccccccCCcceEEcCCCC-----CccchhHHHHHHhc--CCCcccccccccC
Q 039186 140 LECAVCLNEFGDEETLRLIPKCS-----HVFHMDCIDAWLSA--HNTCPVCRANLVP 189 (334)
Q Consensus 140 ~~C~ICl~~~~~~~~~~~lp~C~-----H~FH~~CI~~Wl~~--~~tCP~CR~~l~~ 189 (334)
..|=||.++-+++ . -| |. -.-|.+|+.+|+.. +.+|++|+.++.-
T Consensus 3 diCWIC~~~~~e~--~--~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 3 DICWICNDVCDER--N--NF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CEEEEecCcCCCC--c--cc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 5799999985433 2 34 65 35899999999964 3479999998853
No 77
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.68 E-value=0.03 Score=39.69 Aligned_cols=45 Identities=22% Similarity=0.578 Sum_probs=22.1
Q ss_pred CccccccccCCc-ceEEcCCCCCccchhHHHHHHh-cCCCcccccccc
Q 039186 142 CAVCLNEFGDEE-TLRLIPKCSHVFHMDCIDAWLS-AHNTCPVCRANL 187 (334)
Q Consensus 142 C~ICl~~~~~~~-~~~~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l 187 (334)
|++|.+++...+ .+.=- .|++..|..|...-+. ....||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC-~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPC-ECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SS-TTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccC-cCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999994433 33233 4889999999888775 466899999875
No 78
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.45 E-value=0.04 Score=52.19 Aligned_cols=53 Identities=23% Similarity=0.557 Sum_probs=41.7
Q ss_pred CCCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186 136 GKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 189 (334)
Q Consensus 136 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 189 (334)
..+.+.|+|+..+|........+.+|||+|...||..- .....||+|-.++..
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTE 162 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCcccc
Confidence 34678999999999665555555559999999999996 335579999888763
No 79
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=94.13 E-value=0.046 Score=48.03 Aligned_cols=47 Identities=19% Similarity=0.660 Sum_probs=34.0
Q ss_pred CCCcCccccccccCCcceEEcCCCCC-----ccchhHHHHHHhcC--CCcccccccccC
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSH-----VFHMDCIDAWLSAH--NTCPVCRANLVP 189 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H-----~FH~~CI~~Wl~~~--~tCP~CR~~l~~ 189 (334)
.+..|=||.++-.+ . ..| |.. .-|.+|+.+|+... ..|++|++++.-
T Consensus 7 ~~~~CRIC~~~~~~--~--~~P-C~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 7 MDKCCWICKDEYDV--V--TNY-CNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCeeEecCCCCCC--c--cCC-cccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 45689999988532 2 234 554 45999999999643 469999988754
No 80
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.11 E-value=0.018 Score=53.56 Aligned_cols=45 Identities=27% Similarity=0.695 Sum_probs=33.3
Q ss_pred cCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186 141 ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 189 (334)
Q Consensus 141 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 189 (334)
.|-.|.---. ++...++. |.|+||..|...-. ...||+|+.++-.
T Consensus 5 hCn~C~~~~~-~~~f~LTa-C~HvfC~~C~k~~~--~~~C~lCkk~ir~ 49 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTA-CRHVFCEPCLKASS--PDVCPLCKKSIRI 49 (233)
T ss_pred EeccccccCC-CCceeeee-chhhhhhhhcccCC--ccccccccceeee
Confidence 5777765444 77787775 99999999977632 2289999998743
No 81
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=93.64 E-value=0.087 Score=52.20 Aligned_cols=28 Identities=29% Similarity=1.083 Sum_probs=21.9
Q ss_pred CCCccchhHHHHHHhcC-------------CCccccccccc
Q 039186 161 CSHVFHMDCIDAWLSAH-------------NTCPVCRANLV 188 (334)
Q Consensus 161 C~H~FH~~CI~~Wl~~~-------------~tCP~CR~~l~ 188 (334)
|.-.+|.+|+.+|+.++ .+||+||+.+.
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 44568999999998633 37999999864
No 82
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.17 E-value=0.043 Score=59.02 Aligned_cols=42 Identities=24% Similarity=0.686 Sum_probs=32.9
Q ss_pred CcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccc
Q 039186 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANL 187 (334)
Q Consensus 140 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l 187 (334)
..|..|-..++-|.... .|+|.||..|+. .....||-|+.++
T Consensus 841 skCs~C~~~LdlP~VhF---~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHF---LCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeecccCCccccceeee---ecccHHHHHhhc---cCcccCCccchhh
Confidence 48999999987765432 399999999998 4556799998743
No 83
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=93.11 E-value=0.054 Score=37.38 Aligned_cols=41 Identities=22% Similarity=0.655 Sum_probs=23.6
Q ss_pred CccccccccCCcceEEcCCCCCccchhHHHHHHhcCC--Ccccc
Q 039186 142 CAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN--TCPVC 183 (334)
Q Consensus 142 C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~--tCP~C 183 (334)
|.+|.+....+....- +.|+=.+|..|+..++..+. .||.|
T Consensus 1 C~~C~~iv~~G~~C~~-~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSN-RDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCC-CccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 6778887776654421 24888999999999997666 79988
No 84
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.72 E-value=0.0085 Score=59.20 Aligned_cols=49 Identities=22% Similarity=0.662 Sum_probs=41.7
Q ss_pred CcCccccccccCC-cceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186 140 LECAVCLNEFGDE-ETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 189 (334)
Q Consensus 140 ~~C~ICl~~~~~~-~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 189 (334)
..|+||...++.. +.+..+- |||.+|.+||.+||.....||.|+..+..
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELPK 246 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence 4699999998766 5555554 99999999999999998899999998864
No 85
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.88 E-value=0.11 Score=49.68 Aligned_cols=48 Identities=29% Similarity=0.767 Sum_probs=37.8
Q ss_pred CCcCccccccccCCc---ceEEcCCCCCccchhHHHHHHhcC-CCcccccccc
Q 039186 139 SLECAVCLNEFGDEE---TLRLIPKCSHVFHMDCIDAWLSAH-NTCPVCRANL 187 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~---~~~~lp~C~H~FH~~CI~~Wl~~~-~tCP~CR~~l 187 (334)
-.+|-||-++|...+ ..+.+ +|||.||..|+..-+... ..||.||...
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l-~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVL-KCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCccc-ccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 358999999998653 34455 599999999999877544 3699999985
No 86
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=91.67 E-value=0.079 Score=56.67 Aligned_cols=47 Identities=23% Similarity=0.689 Sum_probs=36.5
Q ss_pred CcCccccccccCCcceEEcCCCCCccchhHHHHHHhcC--CCcccccccccCCC
Q 039186 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH--NTCPVCRANLVPQP 191 (334)
Q Consensus 140 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~--~tCP~CR~~l~~~~ 191 (334)
..|.||++ .+...+.+ |+|.||.+|+..-+... ..||+||..+....
T Consensus 455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 78999999 34455665 99999999999887533 25999999886543
No 87
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=91.44 E-value=0.076 Score=51.28 Aligned_cols=42 Identities=31% Similarity=0.794 Sum_probs=28.4
Q ss_pred cCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccc
Q 039186 141 ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANL 187 (334)
Q Consensus 141 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l 187 (334)
.|--|--.+ ..--|++| |.|+||.+|-.. ..-+.||.|-..+
T Consensus 92 fCd~Cd~PI--~IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 92 FCDRCDFPI--AIYGRMIP-CKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred eecccCCcc--eeeecccc-cchhhhhhhhhc--CccccCcCcccHH
Confidence 465554433 22346788 999999999654 4456899996554
No 88
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.93 E-value=0.11 Score=46.50 Aligned_cols=31 Identities=29% Similarity=0.906 Sum_probs=24.7
Q ss_pred CCCCccchhHHHHHHhc----CC-------CcccccccccCC
Q 039186 160 KCSHVFHMDCIDAWLSA----HN-------TCPVCRANLVPQ 190 (334)
Q Consensus 160 ~C~H~FH~~CI~~Wl~~----~~-------tCP~CR~~l~~~ 190 (334)
.||--||.-|+..||.. ++ .||.|-.++..+
T Consensus 189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 59999999999999952 22 599998887643
No 89
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=90.57 E-value=0.18 Score=49.25 Aligned_cols=51 Identities=18% Similarity=0.451 Sum_probs=34.9
Q ss_pred CCCcCccccccccCCcc-eEEcCCCCCccchhHHHHHH-hcCCCcccccccccC
Q 039186 138 GSLECAVCLNEFGDEET-LRLIPKCSHVFHMDCIDAWL-SAHNTCPVCRANLVP 189 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~-~~~lp~C~H~FH~~CI~~Wl-~~~~tCP~CR~~l~~ 189 (334)
+++-|+.|++++...+. ..-.| ||-..|.-|....- .-+..||-||..+..
T Consensus 13 eed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred ccccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence 45669999999976554 33334 89877777744432 234579999998764
No 90
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=90.45 E-value=0.36 Score=35.02 Aligned_cols=40 Identities=28% Similarity=0.732 Sum_probs=32.8
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccc
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPV 182 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~ 182 (334)
...|.+|-+.|.+++.+.+-|.|+-.+|.+|.+. ...|-.
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~ 44 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCIN 44 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEe
Confidence 4579999999998888889999999999999544 345644
No 91
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=90.16 E-value=0.29 Score=43.08 Aligned_cols=36 Identities=22% Similarity=0.598 Sum_probs=21.8
Q ss_pred CCcCccccccccCCcce---------EEcCCCCCc-cchhHHHHHHh
Q 039186 139 SLECAVCLNEFGDEETL---------RLIPKCSHV-FHMDCIDAWLS 175 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~---------~~lp~C~H~-FH~~CI~~Wl~ 175 (334)
+..|+|||+---....+ |--. |+-. -|..|++++-+
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpym-c~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYM-CDTSYRHSNCLDQFKK 47 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccc-cCCccchhHHHHHHHH
Confidence 45899999874332221 1111 5543 58999999853
No 92
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.86 E-value=0.18 Score=46.30 Aligned_cols=39 Identities=33% Similarity=0.820 Sum_probs=30.4
Q ss_pred CccccccccCCcceEEcCCCCCc-cchhHHHHHHhcCCCccccccccc
Q 039186 142 CAVCLNEFGDEETLRLIPKCSHV-FHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 142 C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
|-.|-+. +..+.++| |.|. +|..|=.. -.+||+|+....
T Consensus 161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhh
Confidence 8888776 67788888 9995 99999553 356999987654
No 93
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=89.40 E-value=0.11 Score=58.37 Aligned_cols=47 Identities=28% Similarity=0.786 Sum_probs=37.9
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccc
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANL 187 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l 187 (334)
+...|.||++.+.....+. .|+|.+|..|+..|+..+..||.|....
T Consensus 1152 ~~~~c~ic~dil~~~~~I~---~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIA---GCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred cccchHHHHHHHHhcCCee---eechhHhhhHHHHHHHHhccCcchhhhh
Confidence 3457999999987433322 5999999999999999999999998544
No 94
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.13 E-value=0.18 Score=54.62 Aligned_cols=35 Identities=26% Similarity=0.580 Sum_probs=27.6
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHH
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWL 174 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl 174 (334)
.+.+|.+|.-.+.... -.+.| |||.||.+||.+-.
T Consensus 816 p~d~C~~C~~~ll~~p-F~vf~-CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIKP-FYVFP-CGHCFHRDCLIRHV 850 (911)
T ss_pred CccchHHhcchhhcCc-ceeee-ccchHHHHHHHHHH
Confidence 5678999999886553 34556 99999999998764
No 95
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=89.13 E-value=0.23 Score=36.11 Aligned_cols=44 Identities=23% Similarity=0.536 Sum_probs=30.3
Q ss_pred CcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 189 (334)
Q Consensus 140 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 189 (334)
..|-.|... +.+-.++| |+|+.+..|.+.+ .-+-||.|-+++..
T Consensus 8 ~~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 8 QPCVFCGFV---GTKGTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEF 51 (55)
T ss_pred eeEEEcccc---cccccccc-ccceeeccccChh--hccCCCCCCCcccC
Confidence 346666555 33344566 9999999997664 33469999888753
No 96
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.69 E-value=0.12 Score=54.11 Aligned_cols=44 Identities=25% Similarity=0.593 Sum_probs=31.8
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccc
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRA 185 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~ 185 (334)
-..|.||+..|....-+-..+.|||..|..|+..-. +.+|| |..
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp-~~~ 54 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP-TKR 54 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC-CCc
Confidence 357999999986554333333699999999998854 45788 544
No 97
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=88.29 E-value=0.27 Score=47.06 Aligned_cols=47 Identities=23% Similarity=0.661 Sum_probs=37.4
Q ss_pred CCCcCccccccccCCcc-eEEcCCCCCccchhHHHHHHhcCCCcccccc
Q 039186 138 GSLECAVCLNEFGDEET-LRLIPKCSHVFHMDCIDAWLSAHNTCPVCRA 185 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~-~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~ 185 (334)
....|+||.+.+-.... +..+ +|||.-|..|+......+.+||+|.+
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~-~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVL-KCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred ccCCCchhHHHhccccccCCcc-CcccchHHHHHHHHhccCCCCCcccc
Confidence 34569999998765543 3345 49999999999999877799999977
No 98
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=87.93 E-value=0.38 Score=47.27 Aligned_cols=65 Identities=20% Similarity=0.478 Sum_probs=42.9
Q ss_pred HHhhCCccchhhhHhhhcCCCCCcCccccccccCCcceEEcCCCCCccchhHHHHH--HhcCCCccccccccc
Q 039186 118 VINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAW--LSAHNTCPVCRANLV 188 (334)
Q Consensus 118 ~i~~lp~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~W--l~~~~tCP~CR~~l~ 188 (334)
.+..-|...-+... ..+++...|.||-..+.- ...+| |+|..|--|-.+. |...+.||+||....
T Consensus 42 nlsaEPnlttsSad--dtDEen~~C~ICA~~~TY---s~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~e 108 (493)
T COG5236 42 NLSAEPNLTTSSAD--DTDEENMNCQICAGSTTY---SARYP-CGHQICHACAVRLRALYMQKGCPLCRTETE 108 (493)
T ss_pred ccccCCcccccccc--ccccccceeEEecCCceE---EEecc-CCchHHHHHHHHHHHHHhccCCCccccccc
Confidence 33444554433322 234456689999987532 34566 9999999997654 567789999998764
No 99
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....
Probab=87.24 E-value=0.33 Score=34.56 Aligned_cols=20 Identities=35% Similarity=0.682 Sum_probs=16.9
Q ss_pred CccccccccCcHHHHHHHHh
Q 039186 274 QDCERFTLRLPAEVRSQLMN 293 (334)
Q Consensus 274 ~~~er~tlrlpe~v~~~~~~ 293 (334)
.+.++|+||||++++.+|-.
T Consensus 2 r~~~~f~lRlP~~l~~~lk~ 21 (50)
T PF03869_consen 2 RKDPQFNLRLPEELKEKLKE 21 (50)
T ss_dssp CCSEEEEEECEHHHHHHHHH
T ss_pred CCCCceeeECCHHHHHHHHH
Confidence 35789999999999988763
No 100
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=86.93 E-value=0.33 Score=51.95 Aligned_cols=23 Identities=35% Similarity=0.993 Sum_probs=21.2
Q ss_pred CCCCccchhHHHHHHhcCCCccc
Q 039186 160 KCSHVFHMDCIDAWLSAHNTCPV 182 (334)
Q Consensus 160 ~C~H~FH~~CI~~Wl~~~~tCP~ 182 (334)
.|+|+-|..|...|+.....||.
T Consensus 1047 ~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1047 TCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred cccccccHHHHHHHHhcCCcCCC
Confidence 49999999999999999889985
No 101
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=86.70 E-value=0.38 Score=33.97 Aligned_cols=43 Identities=30% Similarity=0.802 Sum_probs=25.1
Q ss_pred cCccccccccCCcceEEcCCCC-CccchhHHHHHHhcCCCcccccccccC
Q 039186 141 ECAVCLNEFGDEETLRLIPKCS-HVFHMDCIDAWLSAHNTCPVCRANLVP 189 (334)
Q Consensus 141 ~C~ICl~~~~~~~~~~~lp~C~-H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 189 (334)
.|.-|.-+ +..-+ +|+ |..|..|+...|.....||+|..+++.
T Consensus 4 nCKsCWf~--~k~Li----~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 4 NCKSCWFA--NKGLI----KCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp ---SS-S----SSEE----E-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred cChhhhhc--CCCee----eecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 46666654 23233 365 999999999999999999999998863
No 102
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=85.98 E-value=0.58 Score=40.08 Aligned_cols=51 Identities=22% Similarity=0.497 Sum_probs=34.8
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHh---cCCCcccccccccC
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLS---AHNTCPVCRANLVP 189 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~---~~~tCP~CR~~l~~ 189 (334)
-.+|-||.+.-.+..-+.=-.-||-..|.-|-...|+ .+..||+|++++..
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred ceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 4689999998543321111112999999998777664 46689999998853
No 103
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=85.89 E-value=0.68 Score=44.45 Aligned_cols=48 Identities=25% Similarity=0.560 Sum_probs=34.6
Q ss_pred cCccccccc-cCCcceEEcCCCCCccchhHHHHHHhcC-CCccccccccc
Q 039186 141 ECAVCLNEF-GDEETLRLIPKCSHVFHMDCIDAWLSAH-NTCPVCRANLV 188 (334)
Q Consensus 141 ~C~ICl~~~-~~~~~~~~lp~C~H~FH~~CI~~Wl~~~-~tCP~CR~~l~ 188 (334)
.|++|-... ..++...+...|+|-.|..|++..+... ..||.|-..+.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILR 51 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence 599998763 3444333333499999999999988554 47999977664
No 104
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=85.71 E-value=0.34 Score=45.36 Aligned_cols=50 Identities=26% Similarity=0.591 Sum_probs=38.4
Q ss_pred CCcCccccccc--cCCcceEEcCCCCCccchhHHHHHHhcCC-Ccc--ccccccc
Q 039186 139 SLECAVCLNEF--GDEETLRLIPKCSHVFHMDCIDAWLSAHN-TCP--VCRANLV 188 (334)
Q Consensus 139 ~~~C~ICl~~~--~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~-tCP--~CR~~l~ 188 (334)
+..|+||..+. .++..+.+-|.|-|-.|..|+++.+.... .|| -|-.-|.
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 45799999874 33445666678999999999999996655 699 7866554
No 105
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.06 E-value=0.35 Score=48.46 Aligned_cols=37 Identities=27% Similarity=0.698 Sum_probs=27.7
Q ss_pred CCcCccccccccCC-cceEEcCCCCCccchhHHHHHHhc
Q 039186 139 SLECAVCLNEFGDE-ETLRLIPKCSHVFHMDCIDAWLSA 176 (334)
Q Consensus 139 ~~~C~ICl~~~~~~-~~~~~lp~C~H~FH~~CI~~Wl~~ 176 (334)
..+|.||+.+.... .... ...|+|.||.+|+.+.+..
T Consensus 146 ~~~C~iC~~e~~~~~~~f~-~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFS-VLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred cccCccCccccccHhhhHH-HhcccchhhhHHhHHHhhh
Confidence 56899999555444 4444 4469999999999998863
No 106
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=84.75 E-value=2.1 Score=28.82 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039186 60 TMAIVTVILVSVFFILGFFSVYIRQCT 86 (334)
Q Consensus 60 ~~~iil~ilv~~l~ll~~~~i~~r~c~ 86 (334)
.++|+.++++.+.++++.+.+|..+++
T Consensus 5 ~IaIIv~V~vg~~iiii~~~~YaCcyk 31 (38)
T PF02439_consen 5 TIAIIVAVVVGMAIIIICMFYYACCYK 31 (38)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455666666655555555555554333
No 107
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=83.55 E-value=1.1 Score=48.60 Aligned_cols=54 Identities=22% Similarity=0.548 Sum_probs=38.7
Q ss_pred CCCCcCccccccccCCcceEEcCCCCC---ccchhHHHHHHhcCC--CcccccccccCC
Q 039186 137 KGSLECAVCLNEFGDEETLRLIPKCSH---VFHMDCIDAWLSAHN--TCPVCRANLVPQ 190 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H---~FH~~CI~~Wl~~~~--tCP~CR~~l~~~ 190 (334)
+++..|-||..+=..++.+..--+|.- ..|.+|+.+|+.... .|-+|+.++.-+
T Consensus 10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk 68 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFK 68 (1175)
T ss_pred ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeee
Confidence 345689999999777776643223432 389999999997444 599999887543
No 108
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=83.02 E-value=0.89 Score=44.13 Aligned_cols=45 Identities=27% Similarity=0.569 Sum_probs=33.6
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
+-++|+||.+.+..+.- +.+ =||.-|..|-.+ ....||.||.++.
T Consensus 47 ~lleCPvC~~~l~~Pi~--QC~-nGHlaCssC~~~---~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPPIF--QCD-NGHLACSSCRTK---VSNKCPTCRLPIG 91 (299)
T ss_pred hhccCchhhccCcccce--ecC-CCcEehhhhhhh---hcccCCccccccc
Confidence 35789999999987742 211 369999999653 4567999999886
No 109
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.47 E-value=0.63 Score=44.77 Aligned_cols=28 Identities=25% Similarity=0.786 Sum_probs=22.6
Q ss_pred CCCccchhHHHHHHh-------------cCCCccccccccc
Q 039186 161 CSHVFHMDCIDAWLS-------------AHNTCPVCRANLV 188 (334)
Q Consensus 161 C~H~FH~~CI~~Wl~-------------~~~tCP~CR~~l~ 188 (334)
|.-.+|.+|+.+|+. .+.+||+||+.+.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 567899999999984 3347999999875
No 110
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=82.25 E-value=0.38 Score=51.19 Aligned_cols=47 Identities=28% Similarity=0.827 Sum_probs=37.0
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcC---CCcccccccccC
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH---NTCPVCRANLVP 189 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~---~tCP~CR~~l~~ 189 (334)
..+|+||+..+..+..+ +|.|.|+..|+..-+... ..||+|+..+..
T Consensus 21 ~lEc~ic~~~~~~p~~~----kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 21 ILECPICLEHVKEPSLL----KCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred hccCCceeEEeeccchh----hhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 57999999999887333 799999999988766443 369999977653
No 111
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.10 E-value=0.87 Score=47.60 Aligned_cols=47 Identities=32% Similarity=0.876 Sum_probs=38.9
Q ss_pred CCCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccCC
Q 039186 136 GKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ 190 (334)
Q Consensus 136 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 190 (334)
.+....|.||+.++ ..+..+ |. |..|+..|+..+..||+|+..+...
T Consensus 476 ~~~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~ 522 (543)
T KOG0802|consen 476 REPNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKED 522 (543)
T ss_pred hcccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhcc
Confidence 34567899999998 555665 88 8999999999999999999888654
No 112
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.91 E-value=0.59 Score=44.18 Aligned_cols=50 Identities=22% Similarity=0.668 Sum_probs=35.5
Q ss_pred CCCcCccccccccCCcce-EEcCCCC-----CccchhHHHHHHhcC--------CCccccccccc
Q 039186 138 GSLECAVCLNEFGDEETL-RLIPKCS-----HVFHMDCIDAWLSAH--------NTCPVCRANLV 188 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~-~~lp~C~-----H~FH~~CI~~Wl~~~--------~tCP~CR~~l~ 188 (334)
.+..|-||+..=+++..- .+-| |. |=-|..|+..|...+ .+||-|++...
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred cceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 456899999886554432 3344 64 668999999998421 26999998764
No 113
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.74 E-value=1.4 Score=44.03 Aligned_cols=45 Identities=24% Similarity=0.562 Sum_probs=36.1
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCC---Ccccc
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN---TCPVC 183 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~---tCP~C 183 (334)
..+.|||=.+.=.+++....+. |||+..++-|.+..++.. .||.|
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYC 380 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYC 380 (394)
T ss_pred ceeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCC
Confidence 4578999877766666666776 999999999999876554 59999
No 114
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=78.85 E-value=1.6 Score=46.84 Aligned_cols=41 Identities=20% Similarity=0.390 Sum_probs=31.8
Q ss_pred CcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccc
Q 039186 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPV 182 (334)
Q Consensus 140 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~ 182 (334)
-.|.+|-..+.. .....+.|+|.-|.+|+..|+..+.-||.
T Consensus 780 ~~CtVC~~vi~G--~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIRG--VDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceeee--eEeecccccccccHHHHHHHHhcCCCCcc
Confidence 368888776532 33455679999999999999998888876
No 115
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=78.50 E-value=3.5 Score=34.86 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039186 59 GTMAIVTVILVSVFFILGFFSVYIRQCTER 88 (334)
Q Consensus 59 ~~~~iil~ilv~~l~ll~~~~i~~r~c~~~ 88 (334)
....|+++++..++++++++++++|+.+++
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456667777777766666655555554444
No 116
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=77.15 E-value=1.2 Score=42.35 Aligned_cols=49 Identities=29% Similarity=0.788 Sum_probs=35.3
Q ss_pred CCcCccccccccCCcc-eEEcCCCC-----CccchhHHHHHHh--cCCCccccccccc
Q 039186 139 SLECAVCLNEFGDEET-LRLIPKCS-----HVFHMDCIDAWLS--AHNTCPVCRANLV 188 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~-~~~lp~C~-----H~FH~~CI~~Wl~--~~~tCP~CR~~l~ 188 (334)
+..|=||..+...... ....| |. ...|..|++.|+. ...+|.+|.....
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 4689999998754332 23444 65 4579999999997 4457999987654
No 117
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=76.64 E-value=15 Score=30.62 Aligned_cols=29 Identities=21% Similarity=0.496 Sum_probs=19.5
Q ss_pred CCCCccchhHHHHHHhcCCCcccccccccCCCCCC
Q 039186 160 KCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGET 194 (334)
Q Consensus 160 ~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~~~~ 194 (334)
.|++. ...|.....|+.|++++...+...
T Consensus 74 ~C~K~------TKmLGr~D~CM~C~~pLTLd~~le 102 (114)
T PF11023_consen 74 NCGKQ------TKMLGRVDACMHCKEPLTLDPSLE 102 (114)
T ss_pred CCCCh------HhhhchhhccCcCCCcCccCchhh
Confidence 57763 334555567999999998654443
No 118
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=75.03 E-value=1.1 Score=47.19 Aligned_cols=42 Identities=31% Similarity=0.772 Sum_probs=27.4
Q ss_pred CCCcCcccccc-----ccCCcceEEcCCCCCccchhHHHHHHhcCCCcccc
Q 039186 138 GSLECAVCLNE-----FGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVC 183 (334)
Q Consensus 138 ~~~~C~ICl~~-----~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~C 183 (334)
..+.|.+|... |....+.+.. .|+++||..|+.. ....||.|
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~-~C~avfH~~C~~r---~s~~CPrC 556 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCS-TCLAVFHKKCLRR---KSPCCPRC 556 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHH-HHHHHHHHHHHhc---cCCCCCch
Confidence 45678888332 4333344444 4999999999554 33449999
No 119
>PF15102 TMEM154: TMEM154 protein family
Probab=73.49 E-value=1.5 Score=38.22 Aligned_cols=7 Identities=29% Similarity=1.047 Sum_probs=3.6
Q ss_pred HHHHHHh
Q 039186 169 CIDAWLS 175 (334)
Q Consensus 169 CI~~Wl~ 175 (334)
=+++|..
T Consensus 129 eldkwm~ 135 (146)
T PF15102_consen 129 ELDKWMN 135 (146)
T ss_pred HHHhHHH
Confidence 3555653
No 120
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=72.07 E-value=2.7 Score=38.35 Aligned_cols=41 Identities=34% Similarity=0.863 Sum_probs=29.7
Q ss_pred CCCcCcccccc-----ccCCcceEEcCCCCCccchhHHHHHHhcCCCccccc
Q 039186 138 GSLECAVCLNE-----FGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCR 184 (334)
Q Consensus 138 ~~~~C~ICl~~-----~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR 184 (334)
.++.|.+|-+. |+. +.+...+.|+-+||..|... ..||-|-
T Consensus 151 kGfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~~-----~~CpkC~ 196 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFRK-----KSCPKCA 196 (202)
T ss_pred CCCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcCC-----CCCCCcH
Confidence 35789999863 333 24556667999999999652 6799994
No 121
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=71.22 E-value=3.3 Score=29.73 Aligned_cols=42 Identities=33% Similarity=0.830 Sum_probs=22.6
Q ss_pred CccccccccCCc------ceEEcCCCCCccchhHHHHHH-hcCCCccccc
Q 039186 142 CAVCLNEFGDEE------TLRLIPKCSHVFHMDCIDAWL-SAHNTCPVCR 184 (334)
Q Consensus 142 C~ICl~~~~~~~------~~~~lp~C~H~FH~~CI~~Wl-~~~~tCP~CR 184 (334)
|--|+..|.... ....-|+|++.||.+| +.+. ..=.+||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC-D~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC-DVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH-HHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc-ChhhhccccCCcCCC
Confidence 666777776652 3456678999999999 3332 3444799883
No 122
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=71.19 E-value=2.2 Score=46.10 Aligned_cols=51 Identities=14% Similarity=0.206 Sum_probs=35.3
Q ss_pred CCCcCccccccccCCcc---eEEcCCCCCccchhHHHHHHhc------CCCccccccccc
Q 039186 138 GSLECAVCLNEFGDEET---LRLIPKCSHVFHMDCIDAWLSA------HNTCPVCRANLV 188 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~---~~~lp~C~H~FH~~CI~~Wl~~------~~tCP~CR~~l~ 188 (334)
....|.||.-++.+++. ...+..|+|.||..||..|+.. +-.|++|..-|.
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 35678888888876332 2222259999999999999842 235899987664
No 123
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=70.53 E-value=2.2 Score=30.29 Aligned_cols=43 Identities=23% Similarity=0.670 Sum_probs=20.6
Q ss_pred CcCccccccccCCcceEEcCCCCCccchhHHHHHHhcC---C--Cccccccc
Q 039186 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH---N--TCPVCRAN 186 (334)
Q Consensus 140 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~---~--tCP~CR~~ 186 (334)
+.|+|....+..+ +|... |.|.-|.+ ++.||... . .||+|.++
T Consensus 3 L~CPls~~~i~~P--~Rg~~-C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIP--VRGKN-CKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSE--EEETT---SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeC--ccCCc-CcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 4699988888654 56664 99985433 44565322 2 59999763
No 124
>PHA01513 mnt Mnt
Probab=70.42 E-value=2.9 Score=32.92 Aligned_cols=44 Identities=32% Similarity=0.491 Sum_probs=27.5
Q ss_pred CccccccccCcHHHHHHHHhc--ccCcccce-ee-c----cCcccCCCCeec
Q 039186 274 QDCERFTLRLPAEVRSQLMNS--SLSRSKSC-VA-F----PSVRSSRRGFRS 317 (334)
Q Consensus 274 ~~~er~tlrlpe~v~~~~~~~--~l~~~~s~-~~-~----~~~~s~~~g~~~ 317 (334)
.+..+||||||++.+++|-.. .-.|+.-. +. . -+..+++.||+-
T Consensus 3 r~~~qf~LRLP~eLk~rL~~aA~~nGRSmNaeIv~~Le~al~~~~~~~g~~~ 54 (82)
T PHA01513 3 RDDPQFNLRLPYELKEKLKQRAKANGRSLNAELVQIVQDALSKPSPVTGYRD 54 (82)
T ss_pred CCCcceeeeCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcchhhHH
Confidence 356899999999999887732 33333221 11 1 123577888864
No 125
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=69.25 E-value=2.6 Score=25.93 Aligned_cols=23 Identities=30% Similarity=0.699 Sum_probs=13.1
Q ss_pred cCccccccccCCcceEEcCCCCCcc
Q 039186 141 ECAVCLNEFGDEETLRLIPKCSHVF 165 (334)
Q Consensus 141 ~C~ICl~~~~~~~~~~~lp~C~H~F 165 (334)
.|+-|..++. .....-|.|||.|
T Consensus 2 ~CP~C~~~V~--~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVP--ESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCch--hhcCcCCCCCCCC
Confidence 4666766653 2333455677766
No 126
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=68.24 E-value=4.5 Score=25.66 Aligned_cols=37 Identities=27% Similarity=0.520 Sum_probs=25.1
Q ss_pred CccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186 142 CAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 142 C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
|+.|-..+...+..... =+..||.+| ..|..|...|.
T Consensus 2 C~~C~~~i~~~~~~~~~--~~~~~H~~C--------f~C~~C~~~L~ 38 (39)
T smart00132 2 CAGCGKPIRGGELVLRA--LGKVWHPEC--------FKCSKCGKPLG 38 (39)
T ss_pred ccccCCcccCCcEEEEe--CCccccccC--------CCCcccCCcCc
Confidence 78888888776333222 367899888 46888877653
No 127
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=67.60 E-value=17 Score=28.47 Aligned_cols=8 Identities=50% Similarity=0.588 Sum_probs=4.1
Q ss_pred ccccCCCC
Q 039186 38 VTAQTPPP 45 (334)
Q Consensus 38 ~~~Q~~~~ 45 (334)
+.+|++++
T Consensus 16 aAaq~~~g 23 (79)
T PF07213_consen 16 AAAQTQPG 23 (79)
T ss_pred hhhcCCCC
Confidence 44665543
No 128
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=66.73 E-value=6.5 Score=31.37 Aligned_cols=26 Identities=12% Similarity=0.350 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhhhcCCCCcccchh
Q 039186 73 FILGFFSVYIRQCTERGRNSPDAFAT 98 (334)
Q Consensus 73 ~ll~~~~i~~r~c~~~~~~~~~~~~~ 98 (334)
+|++++..|+.+|.+|++.+.....|
T Consensus 43 iFil~VilwfvCC~kRkrsRrPIYrP 68 (94)
T PF05393_consen 43 IFILLVILWFVCCKKRKRSRRPIYRP 68 (94)
T ss_pred HHHHHHHHHHHHHHHhhhccCCcccc
Confidence 33333444555666665554433444
No 129
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=65.57 E-value=3.6 Score=39.21 Aligned_cols=49 Identities=29% Similarity=0.664 Sum_probs=35.5
Q ss_pred CCcCccccccccCCcceEE---cCCCCCccchhHHHHHHh---------cCCCcccccccc
Q 039186 139 SLECAVCLNEFGDEETLRL---IPKCSHVFHMDCIDAWLS---------AHNTCPVCRANL 187 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~---lp~C~H~FH~~CI~~Wl~---------~~~tCP~CR~~l 187 (334)
..+|-+|.+++...+..+. -|.|+-.+|..|+..-+. ....||.|++.+
T Consensus 182 ~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred chhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 3689999999965554433 245888999999999542 223699998855
No 130
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.62 E-value=5.5 Score=37.77 Aligned_cols=50 Identities=20% Similarity=0.356 Sum_probs=38.7
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 189 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 189 (334)
..+.|+|---+|...-....+..|||+|-..-+.+. ...+|++|.+.+..
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~ 159 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQE 159 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccc
Confidence 457799998888766655555569999998888774 35689999988754
No 131
>PLN02189 cellulose synthase
Probab=64.60 E-value=8.1 Score=43.32 Aligned_cols=52 Identities=19% Similarity=0.492 Sum_probs=36.5
Q ss_pred CCcCcccccccc---CCcceEEcCCCCCccchhHHHHHH-hcCCCcccccccccCC
Q 039186 139 SLECAVCLNEFG---DEETLRLIPKCSHVFHMDCIDAWL-SAHNTCPVCRANLVPQ 190 (334)
Q Consensus 139 ~~~C~ICl~~~~---~~~~~~~lp~C~H~FH~~CI~~Wl-~~~~tCP~CR~~l~~~ 190 (334)
...|.||-+++. +++..+....|+---|..|.+-=- ..++.||.|++.+...
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~ 89 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRL 89 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhc
Confidence 458999999975 344444444577778999984322 3456899999988643
No 132
>PLN02436 cellulose synthase A
Probab=64.12 E-value=8.8 Score=43.18 Aligned_cols=52 Identities=19% Similarity=0.482 Sum_probs=36.3
Q ss_pred CCcCcccccccc---CCcceEEcCCCCCccchhHHHHHH-hcCCCcccccccccCC
Q 039186 139 SLECAVCLNEFG---DEETLRLIPKCSHVFHMDCIDAWL-SAHNTCPVCRANLVPQ 190 (334)
Q Consensus 139 ~~~C~ICl~~~~---~~~~~~~lp~C~H~FH~~CI~~Wl-~~~~tCP~CR~~l~~~ 190 (334)
...|.||-+++. +++.-+....|+--.|..|.+-=- ..++.||.|++.....
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~ 91 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhc
Confidence 458999999973 444444444577779999984322 3456899999988643
No 133
>PRK13415 flagella biosynthesis protein FliZ; Provisional
Probab=63.92 E-value=31 Score=32.07 Aligned_cols=6 Identities=50% Similarity=0.623 Sum_probs=2.8
Q ss_pred Cccccc
Q 039186 36 PYVTAQ 41 (334)
Q Consensus 36 ~~~~~Q 41 (334)
|..++|
T Consensus 23 ~a~a~~ 28 (219)
T PRK13415 23 PAFAAQ 28 (219)
T ss_pred hhhhcc
Confidence 444454
No 134
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=63.86 E-value=7 Score=32.60 Aligned_cols=70 Identities=24% Similarity=0.384 Sum_probs=44.5
Q ss_pred CCHHHHhhCCccchhhhHhhhcCCCCCcCccccccccCCc----------ceEEcCCCCCccchhHHHHHHhcCCCcccc
Q 039186 114 LDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEE----------TLRLIPKCSHVFHMDCIDAWLSAHNTCPVC 183 (334)
Q Consensus 114 l~~~~i~~lp~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~----------~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~C 183 (334)
|.++.-.-+|...|.++.-.+ ......|--|+..|.... ....-++|++.||.+|=.-+-..=.+||-|
T Consensus 31 LARSyHHLfPl~~f~ev~~~~-~~~~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC 109 (112)
T TIGR00622 31 LARSYHHLFPLKAFQEIPLEE-YNGSRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGC 109 (112)
T ss_pred HHHhhhccCCCcccccccccc-cCCCCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCC
Confidence 334444455665555442211 122356999999986531 123456899999999977666666789999
Q ss_pred c
Q 039186 184 R 184 (334)
Q Consensus 184 R 184 (334)
.
T Consensus 110 ~ 110 (112)
T TIGR00622 110 I 110 (112)
T ss_pred C
Confidence 5
No 135
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.80 E-value=4.5 Score=41.20 Aligned_cols=37 Identities=24% Similarity=0.758 Sum_probs=29.1
Q ss_pred CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhc
Q 039186 137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA 176 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~ 176 (334)
.....|-||.+.+.. .+..+ .|+|.||..|+..++..
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~-~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGL-GCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcc--hhhhc-CCCcHHHHHHHHHHhhh
Confidence 346789999999866 34344 49999999999999853
No 136
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=59.69 E-value=3.7 Score=47.63 Aligned_cols=51 Identities=31% Similarity=0.546 Sum_probs=38.9
Q ss_pred CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCC----Cccccccccc
Q 039186 137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN----TCPVCRANLV 188 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----tCP~CR~~l~ 188 (334)
.....|.+|.....+.+.+... .|.-.||..|+..-+..-. .||-||..-.
T Consensus 1106 ~~~~~c~~cr~k~~~~~m~lc~-~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~~ 1160 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKKQDEKMLLCD-ECLSGFHLFCLRPALSSVPPGDWMCPSCRKEHR 1160 (1404)
T ss_pred cchhhhhhhhhcccchhhhhhH-hhhhhHHHHhhhhhhccCCcCCccCCccchhhh
Confidence 3456899999998776555444 4888999999999886544 6999988763
No 137
>COG5416 Uncharacterized integral membrane protein [Function unknown]
Probab=59.28 E-value=31 Score=27.99 Aligned_cols=24 Identities=8% Similarity=-0.036 Sum_probs=11.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHH
Q 039186 55 PKFNGTMAIVTVILVSVFFILGFF 78 (334)
Q Consensus 55 ~~~~~~~~iil~ilv~~l~ll~~~ 78 (334)
-.++-.++++.+++...++.+...
T Consensus 57 ~~~PLilvil~s~v~G~Li~~~~~ 80 (98)
T COG5416 57 WELPLILVILGAAVVGALIAMFAG 80 (98)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555555554444433
No 138
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=59.04 E-value=4.3 Score=37.46 Aligned_cols=43 Identities=23% Similarity=0.590 Sum_probs=34.0
Q ss_pred CcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccc
Q 039186 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRA 185 (334)
Q Consensus 140 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~ 185 (334)
..|.+|..-.-.+..+ - .|+-.+|..|+..++.....||.|-.
T Consensus 182 k~Cn~Ch~LvIqg~rC--g-~c~i~~h~~c~qty~q~~~~cphc~d 224 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRC--G-SCNIQYHRGCIQTYLQRRDICPHCGD 224 (235)
T ss_pred HHHhHhHHHhheeecc--C-cccchhhhHHHHHHhcccCcCCchhc
Confidence 4799999876544322 2 48888999999999999889999943
No 139
>PLN02400 cellulose synthase
Probab=58.77 E-value=32 Score=38.97 Aligned_cols=52 Identities=15% Similarity=0.469 Sum_probs=35.0
Q ss_pred CCcCcccccccc---CCcceEEcCCCCCccchhHHHHH-HhcCCCcccccccccCC
Q 039186 139 SLECAVCLNEFG---DEETLRLIPKCSHVFHMDCIDAW-LSAHNTCPVCRANLVPQ 190 (334)
Q Consensus 139 ~~~C~ICl~~~~---~~~~~~~lp~C~H~FH~~CI~~W-l~~~~tCP~CR~~l~~~ 190 (334)
...|.||-+++. +++.-...-.|+---|..|.+== -..++.||.|++...--
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~ 91 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRH 91 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccccc
Confidence 458999999974 34433333346666899997421 13456899999988643
No 140
>PHA02849 putative transmembrane protein; Provisional
Probab=57.50 E-value=21 Score=27.88 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=20.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039186 55 PKFNGTMAIVTVILVSVFFILGFFSVYIRQCT 86 (334)
Q Consensus 55 ~~~~~~~~iil~ilv~~l~ll~~~~i~~r~c~ 86 (334)
..|...+++++.+++.++.+++++.+|.-.|.
T Consensus 10 ~~f~~g~v~vi~v~v~vI~i~~flLlyLvkws 41 (82)
T PHA02849 10 IEFDAGAVTVILVFVLVISFLAFMLLYLIKWS 41 (82)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666777777777777765554
No 141
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=57.09 E-value=12 Score=29.91 Aligned_cols=35 Identities=11% Similarity=0.257 Sum_probs=27.5
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039186 52 VTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCT 86 (334)
Q Consensus 52 ~~~~~~~~~~~iil~ilv~~l~ll~~~~i~~r~c~ 86 (334)
.+...|+....+++++++++.++.+.+.+++|-|.
T Consensus 29 ss~~~ws~vv~v~i~~lvaVg~~YL~y~~fLkDlI 63 (91)
T PF01708_consen 29 SSGLPWSRVVEVAIFTLVAVGCLYLAYTWFLKDLI 63 (91)
T ss_pred CCCCcceeEeeeeehHHHHHHHHHHHHHHHHHHHh
Confidence 45567777778888888888888888888888775
No 142
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=55.94 E-value=7.7 Score=41.92 Aligned_cols=51 Identities=31% Similarity=0.649 Sum_probs=35.3
Q ss_pred hcCCCCCcCccccccccC---------CcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186 134 KIGKGSLECAVCLNEFGD---------EETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 134 ~~~~~~~~C~ICl~~~~~---------~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
++...+..|+-|...|.. +....+.|.|.|.-|..-|.. ..+||+|...+.
T Consensus 1126 ~i~~~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~----y~~CPLCHs~~~ 1185 (1189)
T KOG2041|consen 1126 KIDPYDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISK----YNCCPLCHSMES 1185 (1189)
T ss_pred cCCccCCCChhhcCcCceeeccCCccccceEEEccccccccccccccc----cccCccccChhh
Confidence 344566778888877731 224567788999988877655 478999976553
No 143
>PF00737 PsbH: Photosystem II 10 kDa phosphoprotein; InterPro: IPR001056 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight phosphoprotein PsbH found in PSII. The phosphorylation site of PsbH is located in the N terminus, where reversible phosphorylation is light-dependent and redox-controlled. PsbH is necessary for the photoprotection of PSII, being required for: (1) the rapid degradation of photodamaged D1 core protein to prevent further oxidative damage to the PSII core, and (2) the insertion of newly synthesised D1 protein into the thylakoid membrane []. PsbH may also regulate the transfer of electrons from D2 (Qa) to D1 (Qb) in the reaction core.; GO: 0042301 phosphate ion binding, 0015979 photosynthesis, 0050821 protein stabilization, 0009523 photosystem II, 0016020 membrane; PDB: 3PRR_H 2AXT_h 3BZ2_H 3BZ1_H 4FBY_W 3PRQ_H 3KZI_H 1S5L_h 3A0H_H 3ARC_H ....
Probab=55.19 E-value=39 Score=24.33 Aligned_cols=34 Identities=15% Similarity=0.357 Sum_probs=18.3
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 039186 48 DAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVY 81 (334)
Q Consensus 48 ~~~~~~~~~~~~~~~iil~ilv~~l~ll~~~~i~ 81 (334)
+++....+.|..+.++.+.+++.++|+++++-+|
T Consensus 13 SeyGkVaPGWGTtplM~~~m~lf~vfl~iiL~Iy 46 (52)
T PF00737_consen 13 SEYGKVAPGWGTTPLMGVFMALFAVFLLIILEIY 46 (52)
T ss_dssp CSTT--BSTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556677776666555555555555555444
No 144
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=55.14 E-value=17 Score=26.66 Aligned_cols=46 Identities=30% Similarity=0.811 Sum_probs=33.7
Q ss_pred cCccccccccCCc-ceEEcCCCCC--ccchhHHHHHHhcCCCcccccccccCCC
Q 039186 141 ECAVCLNEFGDEE-TLRLIPKCSH--VFHMDCIDAWLSAHNTCPVCRANLVPQP 191 (334)
Q Consensus 141 ~C~ICl~~~~~~~-~~~~lp~C~H--~FH~~CI~~Wl~~~~tCP~CR~~l~~~~ 191 (334)
.|-.|-.++..+. ..++ |.+ .||.+|.+.-| +..||.|-..|...|
T Consensus 7 nCE~C~~dLp~~s~~A~I---CSfECTFC~~C~e~~l--~~~CPNCgGelv~RP 55 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYI---CSFECTFCADCAETML--NGVCPNCGGELVRRP 55 (57)
T ss_pred CccccCCCCCCCCCcceE---EeEeCcccHHHHHHHh--cCcCcCCCCccccCC
Confidence 5777878876655 3333 664 69999999976 568999988887544
No 145
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=54.82 E-value=20 Score=28.03 Aligned_cols=53 Identities=17% Similarity=0.493 Sum_probs=21.0
Q ss_pred CCCcCcccccccc---CCcceEEcCCCCCccchhHHHHHH-hcCCCcccccccccCC
Q 039186 138 GSLECAVCLNEFG---DEETLRLIPKCSHVFHMDCIDAWL-SAHNTCPVCRANLVPQ 190 (334)
Q Consensus 138 ~~~~C~ICl~~~~---~~~~~~~lp~C~H~FH~~CI~~Wl-~~~~tCP~CR~~l~~~ 190 (334)
+...|.||-+++. +++.....-.|+--.|..|.+-=. ..++.||-|++.+...
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~ 64 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRH 64 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccc
Confidence 3568999999974 344333333466678889977544 4566899999887643
No 146
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=54.71 E-value=14 Score=31.09 Aligned_cols=10 Identities=20% Similarity=0.726 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 039186 66 VILVSVFFIL 75 (334)
Q Consensus 66 ~ilv~~l~ll 75 (334)
+++++++||+
T Consensus 9 i~~i~l~~~~ 18 (130)
T PF12273_consen 9 IVAILLFLFL 18 (130)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 147
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.73 E-value=8.3 Score=36.49 Aligned_cols=34 Identities=15% Similarity=0.151 Sum_probs=27.8
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHh
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLS 175 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~ 175 (334)
.-+.|+.||..+.++... +=||+|+.+||.+++.
T Consensus 42 ~FdcCsLtLqPc~dPvit----~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDPVIT----PDGYLFDREAILEYIL 75 (303)
T ss_pred CcceeeeecccccCCccC----CCCeeeeHHHHHHHHH
Confidence 346899999999877543 4799999999999874
No 148
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=53.55 E-value=13 Score=36.43 Aligned_cols=51 Identities=27% Similarity=0.593 Sum_probs=33.6
Q ss_pred CCCCcCcccccccc---------------CC-cceEEcCCCCCccchhHHHHHHh---------cCCCccccccccc
Q 039186 137 KGSLECAVCLNEFG---------------DE-ETLRLIPKCSHVFHMDCIDAWLS---------AHNTCPVCRANLV 188 (334)
Q Consensus 137 ~~~~~C~ICl~~~~---------------~~-~~~~~lp~C~H~FH~~CI~~Wl~---------~~~tCP~CR~~l~ 188 (334)
....+|++|+..=. .+ ......| |||+--..=..-|-. -+..||.|-+.|.
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~P-CGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNP-CGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCC-cccccchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 34679999998621 01 1223455 999877777777864 2346999988775
No 149
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=53.20 E-value=7.8 Score=39.46 Aligned_cols=33 Identities=30% Similarity=0.706 Sum_probs=26.5
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHH
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWL 174 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl 174 (334)
+++.|+||..-|.++. ++| |+|..|..|-..-+
T Consensus 3 eelkc~vc~~f~~epi---il~-c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 3 EELKCPVCGSFYREPI---ILP-CSHNLCQACARNIL 35 (699)
T ss_pred ccccCceehhhccCce---Eee-cccHHHHHHHHhhc
Confidence 4678999999998774 455 99999999977544
No 150
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.96 E-value=7.2 Score=37.60 Aligned_cols=38 Identities=24% Similarity=0.479 Sum_probs=28.1
Q ss_pred CCCcCccccccccCCcceEEcC-CCCCccchhHHHHHHhc
Q 039186 138 GSLECAVCLNEFGDEETLRLIP-KCSHVFHMDCIDAWLSA 176 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp-~C~H~FH~~CI~~Wl~~ 176 (334)
..+.|.+|.+.+++..-+ ..| .=.|.||+.|-.+-++.
T Consensus 267 apLcCTLC~ERLEDTHFV-QCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFV-QCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred CceeehhhhhhhccCcee-ecCCCcccceecccCHHHHHh
Confidence 458999999999776544 222 12599999999888764
No 151
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=50.77 E-value=14 Score=25.91 Aligned_cols=38 Identities=24% Similarity=0.482 Sum_probs=26.5
Q ss_pred CccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186 142 CAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 189 (334)
Q Consensus 142 C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 189 (334)
|+.|-..+...+.+... -+..||..| -+|-.|..+|..
T Consensus 1 C~~C~~~I~~~~~~~~~--~~~~~H~~C--------f~C~~C~~~l~~ 38 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKA--MGKFWHPEC--------FKCSKCGKPLND 38 (58)
T ss_dssp BTTTSSBESSSSEEEEE--TTEEEETTT--------SBETTTTCBTTT
T ss_pred CCCCCCCccCcEEEEEe--CCcEEEccc--------cccCCCCCccCC
Confidence 67788888765544222 578888877 578888888754
No 152
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PRK14584 hmsS hemin storage system protein; Provisional
Probab=50.48 E-value=23 Score=31.20 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=13.0
Q ss_pred CcccccCcccchhHHHHHHHHH
Q 039186 9 SRSIFNPMICDHGVVNFLFLFL 30 (334)
Q Consensus 9 ~~~~~~~~~~~~~~~~~l~~~~ 30 (334)
+.++|.-.-+.-+|..|+|++.
T Consensus 13 ~p~liD~~lT~~aW~gfi~l~~ 34 (153)
T PRK14584 13 LPRLIDIILTALAWFGFLFLLV 34 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556668877766553
No 154
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.34 E-value=12 Score=37.60 Aligned_cols=46 Identities=24% Similarity=0.468 Sum_probs=33.5
Q ss_pred CCCCcCccccccccCCc--ceEEcCCCCCccchhHHHHHHhcCCCcccc
Q 039186 137 KGSLECAVCLNEFGDEE--TLRLIPKCSHVFHMDCIDAWLSAHNTCPVC 183 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~--~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~C 183 (334)
+....|++|.-.++... ...... |+|.||..|...|...+..|..|
T Consensus 304 ~~wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 304 KRWRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred HhcCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 34567999887765433 333444 99999999999998877777655
No 155
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=48.95 E-value=30 Score=27.25 Aligned_cols=15 Identities=13% Similarity=0.271 Sum_probs=6.7
Q ss_pred ccccCCCCCHHHHhh
Q 039186 107 SRRGARGLDDSVINT 121 (334)
Q Consensus 107 ~~~~~~gl~~~~i~~ 121 (334)
+...+.|-.++.+..
T Consensus 53 SGnES~Gd~EeeL~~ 67 (81)
T PF00558_consen 53 SGNESDGDEEEELSA 67 (81)
T ss_dssp CHCTTTTCCHH-CHC
T ss_pred CCCCCCCcHHHHHHH
Confidence 344455555553433
No 156
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=47.92 E-value=78 Score=28.14 Aligned_cols=9 Identities=11% Similarity=-0.079 Sum_probs=4.2
Q ss_pred chhHHHHHH
Q 039186 19 DHGVVNFLF 27 (334)
Q Consensus 19 ~~~~~~~l~ 27 (334)
...|+++|+
T Consensus 11 ~~~~llLlL 19 (163)
T PF06679_consen 11 LAPWLLLLL 19 (163)
T ss_pred hHHHHHHHH
Confidence 345555433
No 157
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=47.80 E-value=17 Score=35.67 Aligned_cols=50 Identities=18% Similarity=0.452 Sum_probs=36.2
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
...|+||.+.....+...+--.|++..|..|...-...+..||.||.+..
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccc
Confidence 36899999987544433222247888888888887788889999995553
No 158
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=47.65 E-value=38 Score=27.70 Aligned_cols=25 Identities=4% Similarity=0.133 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 039186 59 GTMAIVTVILVSVFFILGFFSVYIR 83 (334)
Q Consensus 59 ~~~~iil~ilv~~l~ll~~~~i~~r 83 (334)
.++.++++|+++++++.+++.+.++
T Consensus 15 ~sW~~LVGVv~~al~~SlLIalaaK 39 (102)
T PF15176_consen 15 RSWPFLVGVVVTALVTSLLIALAAK 39 (102)
T ss_pred cccHhHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666665555555444
No 159
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.49 E-value=6.9 Score=42.49 Aligned_cols=43 Identities=16% Similarity=0.526 Sum_probs=30.2
Q ss_pred CCcCccccccccCC----cceEEcCCCCCccchhHHHHHHhcCCCcccc
Q 039186 139 SLECAVCLNEFGDE----ETLRLIPKCSHVFHMDCIDAWLSAHNTCPVC 183 (334)
Q Consensus 139 ~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~C 183 (334)
...|.-|.+..... ..+... .|+|+||+.|+..-..+++ |-.|
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~-~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVF-HCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred hhhhhhhcccccccCcccceeeEE-EccchhhhcccccHHHhcc-cChh
Confidence 34699999887522 344455 4999999999988765554 6555
No 160
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=46.73 E-value=14 Score=25.49 Aligned_cols=42 Identities=26% Similarity=0.661 Sum_probs=28.6
Q ss_pred CccccccccCCcceEEcCCCCCccchhHHHHHHh------cCCCccccc
Q 039186 142 CAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLS------AHNTCPVCR 184 (334)
Q Consensus 142 C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~------~~~tCP~CR 184 (334)
|.||......+..+ .--.|+-.||..|+..=.. ..-.||.|+
T Consensus 2 C~vC~~~~~~~~~i-~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 2 CPVCGQSDDDGDMI-QCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp BTTTTSSCTTSSEE-EBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred CcCCCCcCCCCCeE-EcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 88999954444444 4446999999999876542 133688885
No 161
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.01 E-value=46 Score=33.15 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=14.0
Q ss_pred CcccccCcccchhHHHHHHHHHH
Q 039186 9 SRSIFNPMICDHGVVNFLFLFLY 31 (334)
Q Consensus 9 ~~~~~~~~~~~~~~~~~l~~~~~ 31 (334)
+-|+|+|....-..++++|+++-
T Consensus 179 YVW~yep~~~~~~vl~~~fvl~t 201 (372)
T KOG2927|consen 179 YVWIYEPRPLMWQVLGVLFVLVT 201 (372)
T ss_pred EEEeccCCchhHHHHHHHHHHHH
Confidence 45899997765555555444433
No 162
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=45.74 E-value=13 Score=24.51 Aligned_cols=26 Identities=35% Similarity=0.742 Sum_probs=15.4
Q ss_pred cCccccccccCCcc-------eEEcCCCCCccc
Q 039186 141 ECAVCLNEFGDEET-------LRLIPKCSHVFH 166 (334)
Q Consensus 141 ~C~ICl~~~~~~~~-------~~~lp~C~H~FH 166 (334)
.|+-|-..|.-++. ...-+.|+|+|.
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 57778777754442 223345777764
No 163
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=45.67 E-value=18 Score=35.65 Aligned_cols=70 Identities=27% Similarity=0.468 Sum_probs=45.4
Q ss_pred CCCHHHHhhCCccchhhhHhhhcCCCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccc
Q 039186 113 GLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCR 184 (334)
Q Consensus 113 gl~~~~i~~lp~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR 184 (334)
-|.++.-.-+|...+.++.... ..+...|-.|.++.......+. +.|.+.||.+|=.---.+=..||-|.
T Consensus 305 hLARSyhhL~PL~~F~Eip~~~-~~~~~~Cf~C~~~~~~~~~y~C-~~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 305 HLARSYHHLFPLKPFVEIPETE-YNGSRFCFACQGELLSSGRYRC-ESCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred HHHHHHHhhcCCcchhhccccc-cCCCcceeeeccccCCCCcEEc-hhccceeeccchHHHHhhhhcCCCcC
Confidence 3445555566776666654322 2234459999877766665544 46999999999544334455799996
No 164
>PRK02624 psbH photosystem II reaction center protein H; Provisional
Probab=45.32 E-value=52 Score=24.60 Aligned_cols=35 Identities=14% Similarity=0.392 Sum_probs=19.5
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 039186 47 PDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVY 81 (334)
Q Consensus 47 ~~~~~~~~~~~~~~~~iil~ilv~~l~ll~~~~i~ 81 (334)
.+++....+.|..+.++.+...+.++|+++++-+|
T Consensus 15 NSEyGKVaPGWGTTplMgv~m~Lf~vFl~iiLeIY 49 (64)
T PRK02624 15 NSEYGKVVPGWGTTPVMAVFMVLFLVFLLIILQIY 49 (64)
T ss_pred ccccCcccCCccchHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566677766555555555555555555444
No 165
>PF15050 SCIMP: SCIMP protein
Probab=45.28 E-value=44 Score=28.32 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHhhhcCCCCc
Q 039186 74 ILGFFSVYIRQCTERGRNSP 93 (334)
Q Consensus 74 ll~~~~i~~r~c~~~~~~~~ 93 (334)
.++++.+.+.++..|+...+
T Consensus 22 ~lglIlyCvcR~~lRqGkkw 41 (133)
T PF15050_consen 22 VLGLILYCVCRWQLRQGKKW 41 (133)
T ss_pred HHHHHHHHHHHHHHHccccc
Confidence 33333333334444443333
No 166
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=45.15 E-value=11 Score=37.98 Aligned_cols=67 Identities=24% Similarity=0.412 Sum_probs=8.7
Q ss_pred HHHhhCCccchhhhHhhhcCCCCCcCccccccccCC-----------cceEEcCCCCCccchhHHHHHHh------cCCC
Q 039186 117 SVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDE-----------ETLRLIPKCSHVFHMDCIDAWLS------AHNT 179 (334)
Q Consensus 117 ~~i~~lp~~~~~~~~~~~~~~~~~~C~ICl~~~~~~-----------~~~~~lp~C~H~FH~~CI~~Wl~------~~~t 179 (334)
+-+...|+.+.-+.-..+++..-..|++=|..+.-+ .....+ +|||++-. -.|-. ...+
T Consensus 255 ~gL~~~Pt~~~Le~~~~~lNa~rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl-~CGHVhG~---h~Wg~~~~~~~~~r~ 330 (416)
T PF04710_consen 255 EGLAHSPTKKHLEALRQELNAGRPQCPVGLNTLVFPSKSRKDVPDERQPWVYL-NCGHVHGY---HNWGQDSDRDPRSRT 330 (416)
T ss_dssp HHHHHS-CCHHHHHHCHHSS------------------------------------------------------------
T ss_pred hhhhcCCcHHHHHHHHHHHhhcCCCCCcCCCccccccccccccccccCceeec-cccceeee---ccccccccccccccc
Confidence 445556665443322334455567899987765321 122344 59998653 34742 2457
Q ss_pred cccccccc
Q 039186 180 CPVCRANL 187 (334)
Q Consensus 180 CP~CR~~l 187 (334)
||+||..=
T Consensus 331 CPlCr~~g 338 (416)
T PF04710_consen 331 CPLCRQVG 338 (416)
T ss_dssp --------
T ss_pred CCCccccC
Confidence 99998753
No 167
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=44.86 E-value=9.9 Score=28.05 Aligned_cols=36 Identities=17% Similarity=0.398 Sum_probs=18.5
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHH
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWL 174 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl 174 (334)
...|.+|...|.--..-..-..||++||..|.....
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 568999999996544333344699999999976544
No 168
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=44.44 E-value=26 Score=39.46 Aligned_cols=52 Identities=21% Similarity=0.480 Sum_probs=35.5
Q ss_pred CCCcCcccccccc---CCcceEEcCCCCCccchhHHHHHH-hcCCCcccccccccC
Q 039186 138 GSLECAVCLNEFG---DEETLRLIPKCSHVFHMDCIDAWL-SAHNTCPVCRANLVP 189 (334)
Q Consensus 138 ~~~~C~ICl~~~~---~~~~~~~lp~C~H~FH~~CI~~Wl-~~~~tCP~CR~~l~~ 189 (334)
+...|.||-+++. +++.....-.|+--.|..|.+-=- ..++.||.|++....
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhh
Confidence 3567999999974 344333333477779999984322 345689999998864
No 169
>PF05534 HicB: HicB family; InterPro: IPR008651 This family consists of several bacterial HicB related proteins. The function of HicB is unknown although it is thought to be involved in pilus formation. It has been speculated that HicB performs a function antagonistic to that of pili and yet is necessary for invasion of certain niches [].
Probab=43.74 E-value=15 Score=26.08 Aligned_cols=17 Identities=35% Similarity=0.757 Sum_probs=15.0
Q ss_pred ccccccCcHHHHHHHHh
Q 039186 277 ERFTLRLPAEVRSQLMN 293 (334)
Q Consensus 277 er~tlrlpe~v~~~~~~ 293 (334)
.+||||+|+++++++..
T Consensus 18 g~~~lRi~~~Lh~~l~~ 34 (51)
T PF05534_consen 18 GKFNLRIPPELHRALAE 34 (51)
T ss_pred CceeeeCCHHHHHHHHH
Confidence 68999999999998773
No 170
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=43.16 E-value=98 Score=23.32 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 039186 63 IVTVILVSVFFILGFFSVYIRQC 85 (334)
Q Consensus 63 iil~ilv~~l~ll~~~~i~~r~c 85 (334)
+-+++++++++++.++...+.+.
T Consensus 10 ~Gm~iVF~~L~lL~~~i~l~~~~ 32 (79)
T PF04277_consen 10 IGMGIVFLVLILLILVISLMSKL 32 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 171
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=43.03 E-value=12 Score=33.18 Aligned_cols=7 Identities=14% Similarity=0.463 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 039186 63 IVTVILV 69 (334)
Q Consensus 63 iil~ilv 69 (334)
|+++|++
T Consensus 80 iivgvi~ 86 (179)
T PF13908_consen 80 IIVGVIC 86 (179)
T ss_pred eeeehhh
Confidence 3333333
No 172
>PLN00055 photosystem II reaction center protein H; Provisional
Probab=42.88 E-value=58 Score=25.08 Aligned_cols=34 Identities=12% Similarity=0.298 Sum_probs=19.6
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 039186 48 DAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVY 81 (334)
Q Consensus 48 ~~~~~~~~~~~~~~~iil~ilv~~l~ll~~~~i~ 81 (334)
+++....+.|..+.++.+.+.+.++|+++++-+|
T Consensus 28 SeyGkvapgWGTtp~Mg~~m~lf~vfl~iileiy 61 (73)
T PLN00055 28 SEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIY 61 (73)
T ss_pred cccCcccCCccchhHHHHHHHHHHHHHHHHHHHh
Confidence 4455556677766665555555555555555554
No 173
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=41.70 E-value=46 Score=28.35 Aligned_cols=33 Identities=24% Similarity=0.371 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 039186 58 NGTMAIVTVILVSVFFILGFFSVYIRQCTERGR 90 (334)
Q Consensus 58 ~~~~~iil~ilv~~l~ll~~~~i~~r~c~~~~~ 90 (334)
+..+.|++++.+..||+++++.-|+|-.++..+
T Consensus 42 ~~~lYIL~vmgfFgff~~gImlsyvRSKK~E~s 74 (129)
T PF02060_consen 42 NEYLYILVVMGFFGFFTVGIMLSYVRSKKREHS 74 (129)
T ss_dssp STT-HHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred ceeehHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 346788888888888888888888887665544
No 174
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=41.32 E-value=32 Score=38.92 Aligned_cols=51 Identities=20% Similarity=0.511 Sum_probs=34.9
Q ss_pred CCcCcccccccc---CCcceEEcCCCCCccchhHHHHH-HhcCCCcccccccccC
Q 039186 139 SLECAVCLNEFG---DEETLRLIPKCSHVFHMDCIDAW-LSAHNTCPVCRANLVP 189 (334)
Q Consensus 139 ~~~C~ICl~~~~---~~~~~~~lp~C~H~FH~~CI~~W-l~~~~tCP~CR~~l~~ 189 (334)
...|.||-+++. +++.-+..-.|+---|..|.+== -..++.||.|++.+.-
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr 71 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKR 71 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhh
Confidence 458999999974 34433333346666899998421 2456689999998863
No 175
>CHL00066 psbH photosystem II protein H
Probab=40.88 E-value=65 Score=24.81 Aligned_cols=35 Identities=11% Similarity=0.281 Sum_probs=19.4
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 039186 47 PDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVY 81 (334)
Q Consensus 47 ~~~~~~~~~~~~~~~~iil~ilv~~l~ll~~~~i~ 81 (334)
.+++....+.|..+.++.+.+.+.++|+++++-+|
T Consensus 27 NSeyGkvapgWGTtp~Mgv~m~lf~vfl~iiLeiy 61 (73)
T CHL00066 27 NSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIY 61 (73)
T ss_pred ccccCcccCCccchHHHHHHHHHHHHHHHHHHHHh
Confidence 34455556677766555555555555555555444
No 176
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=39.87 E-value=20 Score=23.53 Aligned_cols=27 Identities=26% Similarity=0.658 Sum_probs=15.9
Q ss_pred CcCccccccccCCcc-------eEEcCCCCCccc
Q 039186 140 LECAVCLNEFGDEET-------LRLIPKCSHVFH 166 (334)
Q Consensus 140 ~~C~ICl~~~~~~~~-------~~~lp~C~H~FH 166 (334)
..|+=|...|.-++. ...-++|+|.|+
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 368888887764442 123345777764
No 177
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=39.83 E-value=17 Score=25.85 Aligned_cols=34 Identities=24% Similarity=0.441 Sum_probs=22.4
Q ss_pred CcCc--cccccccC----CcceEEcCCCCCccchhHHHHH
Q 039186 140 LECA--VCLNEFGD----EETLRLIPKCSHVFHMDCIDAW 173 (334)
Q Consensus 140 ~~C~--ICl~~~~~----~~~~~~lp~C~H~FH~~CI~~W 173 (334)
.-|+ =|...+.. +......|.|+|.||..|-..|
T Consensus 19 ~~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 19 KWCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred cCCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCCcC
Confidence 3466 56544432 2334455569999999998888
No 178
>PHA02975 hypothetical protein; Provisional
Probab=39.18 E-value=83 Score=23.98 Aligned_cols=16 Identities=19% Similarity=0.413 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 039186 68 LVSVFFILGFFSVYIR 83 (334)
Q Consensus 68 lv~~l~ll~~~~i~~r 83 (334)
++++.+++++..+|.+
T Consensus 51 i~~v~~~~~~~flYLK 66 (69)
T PHA02975 51 IIFITCIAVFTFLYLK 66 (69)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444443
No 179
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=39.12 E-value=10 Score=38.22 Aligned_cols=50 Identities=30% Similarity=0.567 Sum_probs=0.0
Q ss_pred CCcCccccccc--------------cC--CcceEEcCCCCCccchhHHHHHHh---------cCCCcccccccccC
Q 039186 139 SLECAVCLNEF--------------GD--EETLRLIPKCSHVFHMDCIDAWLS---------AHNTCPVCRANLVP 189 (334)
Q Consensus 139 ~~~C~ICl~~~--------------~~--~~~~~~lp~C~H~FH~~CI~~Wl~---------~~~tCP~CR~~l~~ 189 (334)
..+|++|+..- .+ +......| |||+--.....-|-+ -+..||.|-.+|..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~P-CGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNP-CGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecc-cccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 67899999762 11 11334556 999988888888853 12369999888863
No 180
>PF07948 Nairovirus_M: Nairovirus M polyprotein-like; InterPro: IPR012487 The sequences in this family are similar to the Dugbe virus (Dugbe nairovirus) M polyprotein precursor (Q02004 from SWISSPROT), which includes glycoproteins G1 and G2. Both are thought to be inserted in the membrane of the Golgi complex of the infected host cell, and G1 is known to have a role in infection of vertebrate hosts []. ; PDB: 2L7X_A.
Probab=38.98 E-value=10 Score=39.51 Aligned_cols=26 Identities=15% Similarity=0.126 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHHHhhCCcccccCC
Q 039186 18 CDHGVVNFLFLFLYLHALPYVTAQTP 43 (334)
Q Consensus 18 ~~~~~~~~l~~~~~~~~~~~~~~Q~~ 43 (334)
++-.|+.+|++||.++++|...|+-.
T Consensus 579 KR~sWl~vLLiLl~vsisPVQgaP~~ 604 (645)
T PF07948_consen 579 KRSSWLIVLLILLTVSISPVQGAPVG 604 (645)
T ss_dssp --------------------------
T ss_pred hhhHHHHHHHHHHHhhccccccCccC
Confidence 45689988888888777776554443
No 181
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=38.41 E-value=25 Score=24.71 Aligned_cols=35 Identities=17% Similarity=0.399 Sum_probs=24.2
Q ss_pred CcCccccccccCCcceEEcCCCCCccchhHHHHHH
Q 039186 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWL 174 (334)
Q Consensus 140 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl 174 (334)
..|.+|-..|..-..-.....||++|+..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 46999988886543222333699999999976553
No 182
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=38.38 E-value=22 Score=34.83 Aligned_cols=45 Identities=22% Similarity=0.489 Sum_probs=32.0
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCC---Ccccc
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN---TCPVC 183 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~---tCP~C 183 (334)
.-+.|++--+.-.+.....++. |||+.-++-++..-+... .||.|
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~-CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLE-CGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred ceeeccccHhhhcccCCCeeee-ccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 3567988666555555555664 999999999998654332 59999
No 183
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=38.31 E-value=42 Score=31.17 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=16.0
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039186 53 TGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTER 88 (334)
Q Consensus 53 ~~~~~~~~~~iil~ilv~~l~ll~~~~i~~r~c~~~ 88 (334)
+...++..++||.+++.++|+|+ +..++|+|+..
T Consensus 33 ~~d~~~I~iaiVAG~~tVILVI~--i~v~vR~CRq~ 66 (221)
T PF08374_consen 33 SKDYVKIMIAIVAGIMTVILVIF--IVVLVRYCRQS 66 (221)
T ss_pred cccceeeeeeeecchhhhHHHHH--HHHHHHHHhhc
Confidence 34455544455555444443333 33444667643
No 184
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=38.19 E-value=28 Score=29.48 Aligned_cols=37 Identities=24% Similarity=0.386 Sum_probs=19.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 039186 54 GPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNS 92 (334)
Q Consensus 54 ~~~~~~~~~iil~ilv~~l~ll~~~~i~~r~c~~~~~~~ 92 (334)
...|. .-+|+.+|+.+++-+++++. ++.+|.+|++++
T Consensus 58 ~h~fs-~~~i~~Ii~gv~aGvIg~Il-li~y~irR~~Kk 94 (122)
T PF01102_consen 58 VHRFS-EPAIIGIIFGVMAGVIGIIL-LISYCIRRLRKK 94 (122)
T ss_dssp SSSSS--TCHHHHHHHHHHHHHHHHH-HHHHHHHHHS--
T ss_pred ccCcc-ccceeehhHHHHHHHHHHHH-HHHHHHHHHhcc
Confidence 34443 66666666666666666554 455566555543
No 185
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=37.81 E-value=44 Score=32.53 Aligned_cols=10 Identities=30% Similarity=0.610 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 039186 64 VTVILVSVFF 73 (334)
Q Consensus 64 il~ilv~~l~ 73 (334)
+++||+++++
T Consensus 262 iiaIliIVLI 271 (299)
T PF02009_consen 262 IIAILIIVLI 271 (299)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 186
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=37.03 E-value=71 Score=24.59 Aligned_cols=8 Identities=13% Similarity=0.285 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 039186 75 LGFFSVYI 82 (334)
Q Consensus 75 l~~~~i~~ 82 (334)
+++..+|+
T Consensus 62 ~~l~flYL 69 (72)
T PF12575_consen 62 VLLTFLYL 69 (72)
T ss_pred HHHHHHHh
Confidence 33334443
No 187
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=36.30 E-value=43 Score=26.50 Aligned_cols=11 Identities=9% Similarity=-0.013 Sum_probs=6.1
Q ss_pred CCCCchhHHHH
Q 039186 53 TGPKFNGTMAI 63 (334)
Q Consensus 53 ~~~~~~~~~~i 63 (334)
....+++++.+
T Consensus 18 ~~~~l~pn~lM 28 (85)
T PF10717_consen 18 NLNGLNPNTLM 28 (85)
T ss_pred cccccChhHHH
Confidence 44566666544
No 189
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=35.63 E-value=15 Score=26.13 Aligned_cols=11 Identities=36% Similarity=0.908 Sum_probs=5.7
Q ss_pred CcccccccccC
Q 039186 179 TCPVCRANLVP 189 (334)
Q Consensus 179 tCP~CR~~l~~ 189 (334)
.||+|.++|.+
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 79999988863
No 190
>PRK12658 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=35.59 E-value=40 Score=28.63 Aligned_cols=9 Identities=22% Similarity=0.375 Sum_probs=4.1
Q ss_pred CCCCCcccc
Q 039186 5 TPNPSRSIF 13 (334)
Q Consensus 5 ~~~~~~~~~ 13 (334)
+.|-.|.++
T Consensus 22 ~rnlir~ii 30 (125)
T PRK12658 22 SRHIIRILF 30 (125)
T ss_pred hchHHHHHH
Confidence 444444444
No 191
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=35.12 E-value=21 Score=26.98 Aligned_cols=12 Identities=25% Similarity=0.869 Sum_probs=8.7
Q ss_pred ccchhHHHHHHh
Q 039186 164 VFHMDCIDAWLS 175 (334)
Q Consensus 164 ~FH~~CI~~Wl~ 175 (334)
-||..|+..|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 192
>PHA00617 ribbon-helix-helix domain containing protein
Probab=35.04 E-value=23 Score=27.78 Aligned_cols=37 Identities=22% Similarity=0.419 Sum_probs=26.9
Q ss_pred CCccc-CCCCccccccccCcHHHHHHHHh--cccCcccce
Q 039186 266 GHSVV-QPGQDCERFTLRLPAEVRSQLMN--SSLSRSKSC 302 (334)
Q Consensus 266 ghsl~-~~~~~~er~tlrlpe~v~~~~~~--~~l~~~~s~ 302 (334)
||.+- ..++...++|++||++...++-. ....+++|.
T Consensus 28 ~~~~~~~~~~~m~~iSVrLp~eL~erLD~LA~~~GrsRSe 67 (80)
T PHA00617 28 GDTIELTLTETMDVISFKLPPELNAKLEQVAIKMKKSKSE 67 (80)
T ss_pred CCccccccCCCceEEEEECCHHHHHHHHHHHHHhCcCHHH
Confidence 77754 35778899999999999877663 355555554
No 193
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=34.90 E-value=38 Score=27.76 Aligned_cols=48 Identities=23% Similarity=0.450 Sum_probs=29.1
Q ss_pred CCcCccccccccCCcceE----EcCCC---CCccchhHHHHHHhc---------CCCccccccc
Q 039186 139 SLECAVCLNEFGDEETLR----LIPKC---SHVFHMDCIDAWLSA---------HNTCPVCRAN 186 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~----~lp~C---~H~FH~~CI~~Wl~~---------~~tCP~CR~~ 186 (334)
...|-.|...-.+....- ..+.| .=.||..||..++.. +-.||.||..
T Consensus 7 g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 7 GKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred CCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 346777776533222111 12346 567999999998742 2269999873
No 194
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=34.04 E-value=24 Score=33.52 Aligned_cols=42 Identities=26% Similarity=0.371 Sum_probs=32.0
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCC--Ccccc
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN--TCPVC 183 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~--tCP~C 183 (334)
...|+|-...+..+..- .+|||+|-.+-|...+.... .||+=
T Consensus 176 s~rdPis~~~I~nPviS---kkC~HvydrDsI~~~l~~~~~i~CPv~ 219 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVIS---KKCGHVYDRDSIMQILCDEITIRCPVL 219 (262)
T ss_pred cccCchhhhhhhchhhh---cCcCcchhhhhHHHHhccCceeecccc
Confidence 45799988888766432 26999999999999987754 48773
No 195
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=33.70 E-value=8.8 Score=36.74 Aligned_cols=46 Identities=22% Similarity=0.241 Sum_probs=20.1
Q ss_pred CCcCccccccccCCcceEEcC--CCCCccchhHHHHHHhcCCCcccccc
Q 039186 139 SLECAVCLNEFGDEETLRLIP--KCSHVFHMDCIDAWLSAHNTCPVCRA 185 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp--~C~H~FH~~CI~~Wl~~~~tCP~CR~ 185 (334)
...|+||-..-.-.. ++.-. .-.|.+|.-|-..|-..+..||.|-.
T Consensus 172 ~g~CPvCGs~P~~s~-l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSV-LRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp -SS-TTT---EEEEE-EE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred CCcCCCCCCcCceEE-EecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 358999988732111 11100 12466788888999888889999944
No 196
>PHA03240 envelope glycoprotein M; Provisional
Probab=33.36 E-value=60 Score=30.27 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 039186 61 MAIVTVILVSVFFILGFFSVYIRQCTERG 89 (334)
Q Consensus 61 ~~iil~ilv~~l~ll~~~~i~~r~c~~~~ 89 (334)
+.|++.|+++++++++++-+-.|.+-++.
T Consensus 214 ~WIiilIIiIiIIIL~cfKiPQKl~dKw~ 242 (258)
T PHA03240 214 AWIFIAIIIIIVIILFFFKIPQKLFDKWD 242 (258)
T ss_pred hHHHHHHHHHHHHHHHHHhccHHHHHHHh
Confidence 33444444455555555655555555444
No 197
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=33.05 E-value=15 Score=23.93 Aligned_cols=25 Identities=44% Similarity=0.620 Sum_probs=17.4
Q ss_pred cccccCcHHHHHHHH--hcccCcccce
Q 039186 278 RFTLRLPAEVRSQLM--NSSLSRSKSC 302 (334)
Q Consensus 278 r~tlrlpe~v~~~~~--~~~l~~~~s~ 302 (334)
|.|++||+++.+.+- +.+...++|.
T Consensus 1 Riti~l~~~~~~~l~~~a~~~g~s~s~ 27 (39)
T PF01402_consen 1 RITIRLPDELYERLDELAKELGRSRSE 27 (39)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHTSSHHH
T ss_pred CeEEEeCHHHHHHHHHHHHHHCcCHHH
Confidence 789999999987654 3345555554
No 198
>PHA02935 Hypothetical protein; Provisional
Probab=32.73 E-value=1.3e+02 Score=27.94 Aligned_cols=18 Identities=11% Similarity=0.045 Sum_probs=12.2
Q ss_pred cCcccchhHHHHHHHHHH
Q 039186 14 NPMICDHGVVNFLFLFLY 31 (334)
Q Consensus 14 ~~~~~~~~~~~~l~~~~~ 31 (334)
++|+..|+.|+-=+.-.+
T Consensus 274 ssmpashnnlandlssmm 291 (349)
T PHA02935 274 SSMPASHNNLANDLSSMM 291 (349)
T ss_pred ccCcchhcchhhHHHHHH
Confidence 468888888765555554
No 199
>PHA02819 hypothetical protein; Provisional
Probab=32.16 E-value=1.3e+02 Score=23.06 Aligned_cols=16 Identities=31% Similarity=0.835 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 039186 68 LVSVFFILGFFSVYIR 83 (334)
Q Consensus 68 lv~~l~ll~~~~i~~r 83 (334)
++++.++++++.+|.+
T Consensus 53 l~~~~~~~~~~flYLK 68 (71)
T PHA02819 53 LVTIVFVIIFIIFYLK 68 (71)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 200
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=31.53 E-value=56 Score=32.99 Aligned_cols=9 Identities=22% Similarity=0.146 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 039186 22 VVNFLFLFL 30 (334)
Q Consensus 22 ~~~~l~~~~ 30 (334)
|+++||++.
T Consensus 6 ~l~~ll~ag 14 (400)
T COG3071 6 LLFVLLLAG 14 (400)
T ss_pred HHHHHHHHH
Confidence 333443333
No 201
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=31.51 E-value=47 Score=35.57 Aligned_cols=7 Identities=29% Similarity=-0.059 Sum_probs=3.2
Q ss_pred CccCCCC
Q 039186 258 WFPRSHS 264 (334)
Q Consensus 258 ~~~Rshs 264 (334)
.+|=.||
T Consensus 476 ~~pp~~~ 482 (684)
T PF12877_consen 476 AAPPLYS 482 (684)
T ss_pred CCCCCCC
Confidence 3454443
No 202
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.95 E-value=63 Score=27.14 Aligned_cols=18 Identities=6% Similarity=0.287 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039186 62 AIVTVILVSVFFILGFFS 79 (334)
Q Consensus 62 ~iil~ilv~~l~ll~~~~ 79 (334)
.++++++++++++++++.
T Consensus 95 ~~il~~v~~i~l~iiii~ 112 (116)
T KOG0860|consen 95 RIILGLVIIILLVVIIIY 112 (116)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 203
>PHA02650 hypothetical protein; Provisional
Probab=30.95 E-value=94 Score=24.37 Aligned_cols=17 Identities=12% Similarity=0.188 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039186 68 LVSVFFILGFFSVYIRQ 84 (334)
Q Consensus 68 lv~~l~ll~~~~i~~r~ 84 (334)
+++++++++++.+|.+-
T Consensus 56 i~~v~i~~l~~flYLK~ 72 (81)
T PHA02650 56 IFSLIIVALFSFFVFKG 72 (81)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444455543
No 204
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=30.54 E-value=31 Score=31.55 Aligned_cols=12 Identities=25% Similarity=0.484 Sum_probs=6.0
Q ss_pred hHHHHHHHHHHH
Q 039186 21 GVVNFLFLFLYL 32 (334)
Q Consensus 21 ~~~~~l~~~~~~ 32 (334)
.|++++|.++.+
T Consensus 10 ~~~~~~~~~~~~ 21 (205)
T PRK06231 10 KLLLLSFSFLII 21 (205)
T ss_pred HHHHHHHHHHHH
Confidence 555555544443
No 205
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=30.39 E-value=33 Score=27.75 Aligned_cols=13 Identities=15% Similarity=0.148 Sum_probs=6.7
Q ss_pred hCCcccccCCCCC
Q 039186 34 ALPYVTAQTPPPP 46 (334)
Q Consensus 34 ~~~~~~~Q~~~~~ 46 (334)
.+-.+..|+....
T Consensus 15 vfg~vhcqa~~ns 27 (98)
T PF07204_consen 15 VFGNVHCQASQNS 27 (98)
T ss_pred hccchheeccccC
Confidence 3455566664433
No 206
>PHA02657 hypothetical protein; Provisional
Probab=30.30 E-value=61 Score=25.81 Aligned_cols=29 Identities=17% Similarity=0.374 Sum_probs=12.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039186 55 PKFNGTMAIVTVILVSVFFILGFFSVYIRQC 85 (334)
Q Consensus 55 ~~~~~~~~iil~ilv~~l~ll~~~~i~~r~c 85 (334)
-+|.+.|+|.+. +.++.+++|+.+|.-+|
T Consensus 22 ~~~~~imVitvf--v~vI~il~flLLYLvkW 50 (95)
T PHA02657 22 INFESILVFTIF--IFVVCILIYLLIYLVDW 50 (95)
T ss_pred ecchhhhHHHHH--HHHHHHHHHHHHHHHHH
Confidence 345555444433 33344444444444333
No 207
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=30.21 E-value=99 Score=28.88 Aligned_cols=10 Identities=20% Similarity=0.165 Sum_probs=6.9
Q ss_pred CcccccCccc
Q 039186 9 SRSIFNPMIC 18 (334)
Q Consensus 9 ~~~~~~~~~~ 18 (334)
.-|+|+++..
T Consensus 100 YvW~ye~~~~ 109 (224)
T PF03839_consen 100 YVWIYEPSPL 109 (224)
T ss_pred EEEEecCCcH
Confidence 4588988553
No 208
>PRK07946 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=29.90 E-value=68 Score=28.54 Aligned_cols=9 Identities=11% Similarity=0.268 Sum_probs=3.7
Q ss_pred CCCCCcccc
Q 039186 5 TPNPSRSIF 13 (334)
Q Consensus 5 ~~~~~~~~~ 13 (334)
+.|-.|.|.
T Consensus 24 ~rnLir~ii 32 (163)
T PRK07946 24 ERSLTRMLL 32 (163)
T ss_pred hccHHHHHH
Confidence 334444443
No 209
>PF14979 TMEM52: Transmembrane 52
Probab=29.88 E-value=1.2e+02 Score=26.60 Aligned_cols=35 Identities=17% Similarity=0.444 Sum_probs=18.3
Q ss_pred CchhHHHHHHHHHHHH-HHHHHHHHHHHHHhhhcCC
Q 039186 56 KFNGTMAIVTVILVSV-FFILGFFSVYIRQCTERGR 90 (334)
Q Consensus 56 ~~~~~~~iil~ilv~~-l~ll~~~~i~~r~c~~~~~ 90 (334)
.|...+.|.+++++++ +++-++.+..+|.|..+++
T Consensus 15 ~W~~LWyIwLill~~~llLLCG~ta~C~rfCClrk~ 50 (154)
T PF14979_consen 15 RWSSLWYIWLILLIGFLLLLCGLTASCVRFCCLRKQ 50 (154)
T ss_pred ceehhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4555555555544443 3444555666674544443
No 210
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=29.55 E-value=40 Score=25.94 Aligned_cols=34 Identities=29% Similarity=0.624 Sum_probs=22.9
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHH
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDA 172 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~ 172 (334)
....|.+|....-..... ..+.|.-.||..|...
T Consensus 35 ~~~~C~~C~~~~Ga~i~C-~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 35 RKLKCSICKKKGGACIGC-SHPGCSRSFHVPCARK 68 (90)
T ss_pred hCCCCcCCCCCCCeEEEE-eCCCCCcEEChHHHcc
Confidence 456899999773222222 2346999999999655
No 211
>PRK05978 hypothetical protein; Provisional
Probab=29.51 E-value=39 Score=29.52 Aligned_cols=27 Identities=19% Similarity=0.614 Sum_probs=20.6
Q ss_pred CCccchhHHHHHHhcCCCcccccccccCCCCC
Q 039186 162 SHVFHMDCIDAWLSAHNTCPVCRANLVPQPGE 193 (334)
Q Consensus 162 ~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~~~ 193 (334)
|+.|+ .+|+.+..||.|-.++...+..
T Consensus 42 G~LF~-----g~Lkv~~~C~~CG~~~~~~~a~ 68 (148)
T PRK05978 42 GKLFR-----AFLKPVDHCAACGEDFTHHRAD 68 (148)
T ss_pred Ccccc-----cccccCCCccccCCccccCCcc
Confidence 36675 6889999999998888755443
No 212
>PHA03163 hypothetical protein; Provisional
Probab=29.25 E-value=2.8e+02 Score=22.23 Aligned_cols=15 Identities=13% Similarity=0.100 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHhh
Q 039186 72 FFILGFFSVYIRQCT 86 (334)
Q Consensus 72 l~ll~~~~i~~r~c~ 86 (334)
+++++.+.+|.+++.
T Consensus 67 ~Ivl~A~~iyL~y~C 81 (92)
T PHA03163 67 LIMLIACIIYCIYMC 81 (92)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444443
No 213
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=28.98 E-value=18 Score=27.17 Aligned_cols=31 Identities=13% Similarity=0.250 Sum_probs=0.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 039186 61 MAIVTVILVSVFFILGFFSVYIRQCTERGRN 91 (334)
Q Consensus 61 ~~iil~ilv~~l~ll~~~~i~~r~c~~~~~~ 91 (334)
.++|.++++.+++.++++.+.+-+++++...
T Consensus 12 aavIaG~Vvgll~ailLIlf~iyR~rkkdEG 42 (64)
T PF01034_consen 12 AAVIAGGVVGLLFAILLILFLIYRMRKKDEG 42 (64)
T ss_dssp -------------------------S-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3445555555555555555545455544443
No 214
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=28.88 E-value=44 Score=32.86 Aligned_cols=47 Identities=30% Similarity=0.685 Sum_probs=28.9
Q ss_pred hcCCCCCcCccccccccCCc-----------ceEEcCCCCCc--cchhHHHHHHh------cCCCccccccc
Q 039186 134 KIGKGSLECAVCLNEFGDEE-----------TLRLIPKCSHV--FHMDCIDAWLS------AHNTCPVCRAN 186 (334)
Q Consensus 134 ~~~~~~~~C~ICl~~~~~~~-----------~~~~lp~C~H~--FH~~CI~~Wl~------~~~tCP~CR~~ 186 (334)
+++.+--.|++=|..+.-+. ....+. |||+ +|. |=. ....||+||..
T Consensus 285 ~iNA~RPQCPVglnTL~~P~~~~~~~~~~~QP~vYl~-CGHV~G~H~-----WG~~e~~g~~~r~CPmC~~~ 350 (429)
T KOG3842|consen 285 EINAARPQCPVGLNTLAFPSKRRKRVVDEKQPWVYLN-CGHVHGYHN-----WGVRENTGQRERECPMCRVV 350 (429)
T ss_pred HHhccCCCCCcccceeecccccccccccccCCeEEEe-ccccccccc-----cccccccCcccCcCCeeeee
Confidence 34455668999888763322 234554 9987 564 632 22369999863
No 215
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=28.81 E-value=1.1e+02 Score=23.15 Aligned_cols=25 Identities=28% Similarity=0.602 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039186 60 TMAIVTVILVSVFFILGFFSVYIRQ 84 (334)
Q Consensus 60 ~~~iil~ilv~~l~ll~~~~i~~r~ 84 (334)
.|+|+.++|+++++++++..+-+.+
T Consensus 15 G~LIAvvLLLsIl~~lt~~ai~~Qq 39 (66)
T PF13179_consen 15 GMLIAVVLLLSILAFLTYWAIKVQQ 39 (66)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777775543
No 216
>PHA02844 putative transmembrane protein; Provisional
Probab=27.93 E-value=1.5e+02 Score=23.02 Aligned_cols=16 Identities=19% Similarity=0.384 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 039186 68 LVSVFFILGFFSVYIR 83 (334)
Q Consensus 68 lv~~l~ll~~~~i~~r 83 (334)
++++++++++..+|.+
T Consensus 55 i~~v~~~~~~~flYLK 70 (75)
T PHA02844 55 IIFVVFATFLTFLYLK 70 (75)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444444444445543
No 217
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=27.90 E-value=51 Score=20.39 Aligned_cols=29 Identities=17% Similarity=0.494 Sum_probs=10.4
Q ss_pred cCccccccccCCcceEEcCCCCCccchhHH
Q 039186 141 ECAVCLNEFGDEETLRLIPKCSHVFHMDCI 170 (334)
Q Consensus 141 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI 170 (334)
.|.+|....... ....-+.|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~~-~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGG-WFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCC-ceEECccCCCccChhcC
Confidence 588888887662 33333459999999985
No 218
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=27.66 E-value=1.6e+02 Score=25.05 Aligned_cols=27 Identities=7% Similarity=0.122 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039186 60 TMAIVTVILVSVFFILGFFSVYIRQCT 86 (334)
Q Consensus 60 ~~~iil~ilv~~l~ll~~~~i~~r~c~ 86 (334)
.++-+++.|+.++.+++++.+..|+..
T Consensus 17 ~l~qv~~~L~lVl~lI~~~aWLlkR~~ 43 (124)
T PRK11486 17 PLLQVSGALIGIIALILAAAWLVKRLG 43 (124)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 444555555555555555556566543
No 219
>PHA03054 IMV membrane protein; Provisional
Probab=27.37 E-value=1.3e+02 Score=23.04 Aligned_cols=15 Identities=20% Similarity=0.503 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 039186 68 LVSVFFILGFFSVYI 82 (334)
Q Consensus 68 lv~~l~ll~~~~i~~ 82 (334)
+++++++++++.+|.
T Consensus 55 l~~v~~~~l~~flYL 69 (72)
T PHA03054 55 FFIVLILLLLIYLYL 69 (72)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444444
No 220
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=27.35 E-value=79 Score=26.06 Aligned_cols=22 Identities=14% Similarity=0.046 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 039186 64 VTVILVSVFFILGFFSVYIRQC 85 (334)
Q Consensus 64 il~ilv~~l~ll~~~~i~~r~c 85 (334)
+++|+.++|++++++.+..++.
T Consensus 3 Ll~il~llLll~l~asl~~wr~ 24 (107)
T PF15330_consen 3 LLGILALLLLLSLAASLLAWRM 24 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455544333
No 221
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=27.28 E-value=8.2 Score=29.53 Aligned_cols=40 Identities=23% Similarity=0.458 Sum_probs=21.0
Q ss_pred CcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 140 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
..|+.|..++.... +|.+|..|-.. +.....||-|..+|.
T Consensus 2 ~~CP~C~~~L~~~~--------~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG--------GHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET--------TEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC--------CEEECcccccc-ceecccCCCcccHHH
Confidence 46999998864332 56666667554 344567999988774
No 222
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=27.12 E-value=1.2e+02 Score=22.92 Aligned_cols=28 Identities=25% Similarity=0.518 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039186 60 TMAIVTVILVSVFFILGFFSVYIRQCTE 87 (334)
Q Consensus 60 ~~~iil~ilv~~l~ll~~~~i~~r~c~~ 87 (334)
.|.+++.+|+++.+++.++..+.+....
T Consensus 11 Gm~iVF~~L~lL~~~i~l~~~~~~~~~~ 38 (79)
T PF04277_consen 11 GMGIVFLVLILLILVISLMSKLIRKFAP 38 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5777777777777777777777665543
No 223
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=26.89 E-value=1.3e+02 Score=26.48 Aligned_cols=9 Identities=22% Similarity=0.364 Sum_probs=3.5
Q ss_pred chhHHHHHH
Q 039186 57 FNGTMAIVT 65 (334)
Q Consensus 57 ~~~~~~iil 65 (334)
|+.-|.+|+
T Consensus 27 fsthm~tIL 35 (189)
T PF05568_consen 27 FSTHMYTIL 35 (189)
T ss_pred HHHHHHHHH
Confidence 333444433
No 224
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=26.83 E-value=39 Score=32.55 Aligned_cols=23 Identities=4% Similarity=0.109 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 039186 58 NGTMAIVTVILVSVFFILGFFSV 80 (334)
Q Consensus 58 ~~~~~iil~ilv~~l~ll~~~~i 80 (334)
+..+-|++|+.++++++++++.+
T Consensus 270 ~~~vPIaVG~~La~lvlivLiaY 292 (306)
T PF01299_consen 270 SDLVPIAVGAALAGLVLIVLIAY 292 (306)
T ss_pred cchHHHHHHHHHHHHHHHHHHhh
Confidence 44555666666666666555444
No 225
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=26.43 E-value=52 Score=22.60 Aligned_cols=14 Identities=7% Similarity=-0.145 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHh
Q 039186 72 FFILGFFSVYIRQC 85 (334)
Q Consensus 72 l~ll~~~~i~~r~c 85 (334)
-+.++...+|.++.
T Consensus 21 ~i~iva~~iYRKw~ 34 (43)
T PF08114_consen 21 GIGIVALFIYRKWQ 34 (43)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333344444443
No 226
>PF15102 TMEM154: TMEM154 protein family
Probab=26.36 E-value=15 Score=31.97 Aligned_cols=6 Identities=17% Similarity=0.301 Sum_probs=2.8
Q ss_pred CCCCCc
Q 039186 52 VTGPKF 57 (334)
Q Consensus 52 ~~~~~~ 57 (334)
.++..|
T Consensus 52 ~~q~ef 57 (146)
T PF15102_consen 52 SSQLEF 57 (146)
T ss_pred CCCcce
Confidence 344455
No 227
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=26.22 E-value=44 Score=23.66 Aligned_cols=26 Identities=27% Similarity=0.687 Sum_probs=14.8
Q ss_pred EcCCCCCccchhHHHHHHhcCCCcccc
Q 039186 157 LIPKCSHVFHMDCIDAWLSAHNTCPVC 183 (334)
Q Consensus 157 ~lp~C~H~FH~~CI~~Wl~~~~tCP~C 183 (334)
..+.|+|.|-..= ..-......||.|
T Consensus 30 ~C~~Cgh~w~~~v-~~R~~~~~~CP~C 55 (55)
T PF14311_consen 30 KCPKCGHEWKASV-NDRTRRGKGCPYC 55 (55)
T ss_pred ECCCCCCeeEccH-hhhccCCCCCCCC
Confidence 3446778765432 2222455679988
No 228
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.14 E-value=23 Score=36.17 Aligned_cols=39 Identities=18% Similarity=0.377 Sum_probs=28.1
Q ss_pred CCCcCccccccccCCcce----EEcCCCCCccchhHHHHHHhc
Q 039186 138 GSLECAVCLNEFGDEETL----RLIPKCSHVFHMDCIDAWLSA 176 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~----~~lp~C~H~FH~~CI~~Wl~~ 176 (334)
....|+.|...++.+... .....|.|.||..|+..|-..
T Consensus 225 ntk~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h 267 (444)
T KOG1815|consen 225 NTKECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDH 267 (444)
T ss_pred cCccCCCcccchhccCCccccccccCCcCCeeceeeecccccc
Confidence 345699999999776621 122249999999998888654
No 229
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=26.12 E-value=41 Score=27.90 Aligned_cols=10 Identities=30% Similarity=0.886 Sum_probs=6.7
Q ss_pred cCcccccccc
Q 039186 141 ECAVCLNEFG 150 (334)
Q Consensus 141 ~C~ICl~~~~ 150 (334)
.|+-|-.+|.
T Consensus 4 ~CP~C~seyt 13 (109)
T TIGR00686 4 PCPKCNSEYT 13 (109)
T ss_pred cCCcCCCcce
Confidence 4777777764
No 230
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.62 E-value=84 Score=33.97 Aligned_cols=48 Identities=25% Similarity=0.538 Sum_probs=34.0
Q ss_pred cCccccccccCCcceEEcCCCCC-ccchhHHHHHH--hc----CCCcccccccccCCCC
Q 039186 141 ECAVCLNEFGDEETLRLIPKCSH-VFHMDCIDAWL--SA----HNTCPVCRANLVPQPG 192 (334)
Q Consensus 141 ~C~ICl~~~~~~~~~~~lp~C~H-~FH~~CI~~Wl--~~----~~tCP~CR~~l~~~~~ 192 (334)
.|+||-.... ......|+| .-|..|..+.. .. ...||+||..+.....
T Consensus 2 ~c~ic~~s~~----~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~~s~ 56 (669)
T KOG2231|consen 2 SCAICAFSPD----FVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVETKSN 56 (669)
T ss_pred CcceeecCcc----ccccccccccccchhhhhhhhhhcccccccccCcccccceeeecc
Confidence 5999987642 223447999 79999998875 22 3468999998765433
No 231
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=25.21 E-value=63 Score=26.70 Aligned_cols=12 Identities=33% Similarity=1.079 Sum_probs=8.2
Q ss_pred CcccccccccCC
Q 039186 179 TCPVCRANLVPQ 190 (334)
Q Consensus 179 tCP~CR~~l~~~ 190 (334)
+||.|-+.+...
T Consensus 28 vCP~CG~~~~~~ 39 (108)
T PF09538_consen 28 VCPKCGTEFPPE 39 (108)
T ss_pred cCCCCCCccCcc
Confidence 588887766544
No 232
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=25.06 E-value=54 Score=29.69 Aligned_cols=17 Identities=18% Similarity=0.161 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHh
Q 039186 69 VSVFFILGFFSVYIRQC 85 (334)
Q Consensus 69 v~~l~ll~~~~i~~r~c 85 (334)
.+++++++++.+..|+.
T Consensus 19 ~g~l~~vllfIfaKRQI 35 (186)
T PF07406_consen 19 YGSLVFVLLFIFAKRQI 35 (186)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333344444443
No 233
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.90 E-value=13 Score=35.49 Aligned_cols=48 Identities=21% Similarity=0.510 Sum_probs=35.5
Q ss_pred CcCccccccccCCc--c-eEEcCC-------CCCccchhHHHHHHhcC-CCcccccccc
Q 039186 140 LECAVCLNEFGDEE--T-LRLIPK-------CSHVFHMDCIDAWLSAH-NTCPVCRANL 187 (334)
Q Consensus 140 ~~C~ICl~~~~~~~--~-~~~lp~-------C~H~FH~~CI~~Wl~~~-~tCP~CR~~l 187 (334)
..|.||...|...+ . -+++.. |+|..|..|++.-+... ..||.|+...
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~~ 266 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWSH 266 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCccccee
Confidence 56999999998332 2 223323 99999999999987544 4799998754
No 234
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=24.54 E-value=79 Score=34.78 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 039186 68 LVSVFFILGFFSVYIR 83 (334)
Q Consensus 68 lv~~l~ll~~~~i~~r 83 (334)
+++++++++++.+|+|
T Consensus 283 ~livl~lL~vLl~yCr 298 (807)
T PF10577_consen 283 ALIVLILLCVLLCYCR 298 (807)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 3333333344434333
No 235
>PF13994 PgaD: PgaD-like protein
Probab=24.43 E-value=1.3e+02 Score=25.66 Aligned_cols=20 Identities=10% Similarity=0.174 Sum_probs=11.1
Q ss_pred ccccCcccchhHHHHHHHHH
Q 039186 11 SIFNPMICDHGVVNFLFLFL 30 (334)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~~ 30 (334)
+++.-.-+.-.|..++||+.
T Consensus 14 r~~~~~lT~~~W~~~~yL~~ 33 (138)
T PF13994_consen 14 RLIDYFLTLLFWGGFIYLWR 33 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44544445557776665543
No 236
>PF07436 Curto_V3: Curtovirus V3 protein; InterPro: IPR009997 This family consists of several Curtovirus V3 proteins of around 90 residues in length. The function of this family is unknown.
Probab=24.26 E-value=66 Score=25.04 Aligned_cols=17 Identities=35% Similarity=0.667 Sum_probs=12.2
Q ss_pred cccchhHHHHHHHHHHH
Q 039186 16 MICDHGVVNFLFLFLYL 32 (334)
Q Consensus 16 ~~~~~~~~~~l~~~~~~ 32 (334)
|-|...||++||++-.|
T Consensus 1 MVClPDWlFLlFifsil 17 (87)
T PF07436_consen 1 MVCLPDWLFLLFIFSIL 17 (87)
T ss_pred CccchhHHHHHHHHHHH
Confidence 56777998888766544
No 237
>PHA02692 hypothetical protein; Provisional
Probab=24.22 E-value=2.1e+02 Score=21.96 Aligned_cols=12 Identities=8% Similarity=-0.034 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 039186 71 VFFILGFFSVYI 82 (334)
Q Consensus 71 ~l~ll~~~~i~~ 82 (334)
+.+++++..+|.
T Consensus 56 ~~~~vll~flYL 67 (70)
T PHA02692 56 AAIGVLLCFHYL 67 (70)
T ss_pred HHHHHHHHHHHH
Confidence 333333344443
No 238
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=23.30 E-value=93 Score=30.17 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039186 68 LVSVFFILGFFSVYIRQ 84 (334)
Q Consensus 68 lv~~l~ll~~~~i~~r~ 84 (334)
||.+++.++++.+|++-
T Consensus 266 lvllil~vvliiLYiWl 282 (295)
T TIGR01478 266 LVLIILTVVLIILYIWL 282 (295)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334444444443
No 239
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=23.10 E-value=1.1e+02 Score=21.71 Aligned_cols=24 Identities=25% Similarity=0.588 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCC
Q 039186 67 ILVSVFFILGFFSVYIRQCTERGR 90 (334)
Q Consensus 67 ilv~~l~ll~~~~i~~r~c~~~~~ 90 (334)
|+++++++++.+.-..|+|..-++
T Consensus 8 ivli~lv~~gy~~hmkrycrafrq 31 (54)
T PF13260_consen 8 IVLIVLVVVGYFCHMKRYCRAFRQ 31 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556667777777888876543
No 240
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=22.99 E-value=45 Score=24.45 Aligned_cols=11 Identities=27% Similarity=0.800 Sum_probs=4.5
Q ss_pred CcccccccccC
Q 039186 179 TCPVCRANLVP 189 (334)
Q Consensus 179 tCP~CR~~l~~ 189 (334)
.||.|++.+..
T Consensus 4 ~CP~C~k~~~~ 14 (57)
T PF03884_consen 4 KCPICGKPVEW 14 (57)
T ss_dssp E-TTT--EEE-
T ss_pred cCCCCCCeecc
Confidence 47777666654
No 241
>PTZ00370 STEVOR; Provisional
Probab=22.61 E-value=97 Score=30.06 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=12.1
Q ss_pred chhHHHHHHHH-HHHHHHHHHHHHHHHHHh
Q 039186 57 FNGTMAIVTVI-LVSVFFILGFFSVYIRQC 85 (334)
Q Consensus 57 ~~~~~~iil~i-lv~~l~ll~~~~i~~r~c 85 (334)
|.|.=+.++++ +++++++++.+.+|.|+.
T Consensus 254 F~Pygiaalvllil~vvliilYiwlyrrRK 283 (296)
T PTZ00370 254 FYPYGIAALVLLILAVVLIILYIWLYRRRK 283 (296)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44433333333 334444444444554443
No 242
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=22.34 E-value=98 Score=32.61 Aligned_cols=24 Identities=8% Similarity=0.117 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039186 61 MAIVTVILVSVFFILGFFSVYIRQ 84 (334)
Q Consensus 61 ~~iil~ilv~~l~ll~~~~i~~r~ 84 (334)
|.++++|++++++++++..++.|+
T Consensus 3 ~~~ii~i~ii~i~~~~~~~~~rr~ 26 (569)
T PRK04778 3 IYLIIAIVVIIIIAYLAGLILRKR 26 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333333
No 243
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=22.30 E-value=1.9e+02 Score=29.57 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=11.0
Q ss_pred HHHHHhhCCcccccCC
Q 039186 28 LFLYLHALPYVTAQTP 43 (334)
Q Consensus 28 ~~~~~~~~~~~~~Q~~ 43 (334)
+.-++|.+|+...|-.
T Consensus 7 ~~~~~h~lPh~n~~f~ 22 (418)
T cd07912 7 LVKLLHSLPHLNFTFH 22 (418)
T ss_pred HHHHHHhCCCCCceEE
Confidence 3444688999887753
No 244
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=22.19 E-value=47 Score=26.65 Aligned_cols=33 Identities=27% Similarity=0.598 Sum_probs=22.3
Q ss_pred CCCcCccccccccCCcceE-EcCCCCCccchhHHHH
Q 039186 138 GSLECAVCLNEFGDEETLR-LIPKCSHVFHMDCIDA 172 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~-~lp~C~H~FH~~CI~~ 172 (334)
....|.||.... +..+. .-+.|...||..|...
T Consensus 54 ~~~~C~iC~~~~--G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 54 FKLKCSICGKSG--GACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred cCCcCcCCCCCC--ceeEEcCCCCCCcCCCHHHHHH
Confidence 356899999983 33331 1124888999999765
No 245
>PRK04023 DNA polymerase II large subunit; Validated
Probab=22.11 E-value=52 Score=37.11 Aligned_cols=46 Identities=22% Similarity=0.413 Sum_probs=31.9
Q ss_pred CCCCcCccccccccCCcceEEcCCCCC-----ccchhHHHHHHhcCCCccccccccc
Q 039186 137 KGSLECAVCLNEFGDEETLRLIPKCSH-----VFHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H-----~FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
.+...|+=|-... .....|.||. .||..| .+......||.|...+.
T Consensus 624 Vg~RfCpsCG~~t----~~frCP~CG~~Te~i~fCP~C--G~~~~~y~CPKCG~El~ 674 (1121)
T PRK04023 624 IGRRKCPSCGKET----FYRRCPFCGTHTEPVYRCPRC--GIEVEEDECEKCGREPT 674 (1121)
T ss_pred ccCccCCCCCCcC----CcccCCCCCCCCCcceeCccc--cCcCCCCcCCCCCCCCC
Confidence 3566899998774 2235567984 599999 44344567999987765
No 246
>PF09533 DUF2380: Predicted lipoprotein of unknown function (DUF2380); InterPro: IPR011755 This family consists of at least 9 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. One appears truncated toward the N terminus; the others are predicted lipoproteins. The function is unknown.
Probab=22.03 E-value=46 Score=30.08 Aligned_cols=23 Identities=22% Similarity=0.554 Sum_probs=19.9
Q ss_pred CCCCccccccccCcHHHHHHHHh
Q 039186 271 QPGQDCERFTLRLPAEVRSQLMN 293 (334)
Q Consensus 271 ~~~~~~er~tlrlpe~v~~~~~~ 293 (334)
+.|-|...||+.+|++|+++|-.
T Consensus 116 ~~Gi~IHd~ti~Ip~~vH~rIH~ 138 (188)
T PF09533_consen 116 RRGIDIHDYTIPIPRDVHRRIHG 138 (188)
T ss_pred HcCCChhheeEecCHHHHHHhhC
Confidence 35789999999999999988774
No 247
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=21.72 E-value=31 Score=30.64 Aligned_cols=30 Identities=27% Similarity=0.455 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039186 59 GTMAIVTVILVSVFFILGFFSVYIRQCTER 88 (334)
Q Consensus 59 ~~~~iil~ilv~~l~ll~~~~i~~r~c~~~ 88 (334)
..+-||+++|+++-|+-+++++++|+...|
T Consensus 130 tLVGIIVGVLlaIG~igGIIivvvRKmSGR 159 (162)
T PF05808_consen 130 TLVGIIVGVLLAIGFIGGIIIVVVRKMSGR 159 (162)
T ss_dssp ------------------------------
T ss_pred eeeeehhhHHHHHHHHhheeeEEeehhccc
Confidence 345677888888888888888888876443
No 248
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=21.59 E-value=1e+02 Score=24.97 Aligned_cols=36 Identities=6% Similarity=-0.068 Sum_probs=16.6
Q ss_pred ccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 039186 38 VTAQTPPPPPDAFSVTGPKFNGTMAIVTVILVSVFF 73 (334)
Q Consensus 38 ~~~Q~~~~~~~~~~~~~~~~~~~~~iil~ilv~~l~ 73 (334)
.++|.+....-...+.-...|+.++..-++++++++
T Consensus 22 qa~~nsaGgdL~atS~~~ayWpyLA~GGG~iLilIi 57 (98)
T PF07204_consen 22 QASQNSAGGDLQATSSFVAYWPYLAAGGGLILILII 57 (98)
T ss_pred eccccCCCCCeEEeehHHhhhHHhhccchhhhHHHH
Confidence 445665555433333333355555555444444444
No 249
>PF09842 DUF2069: Predicted membrane protein (DUF2069); InterPro: IPR018643 This family of prokaryotic proteins has no known function but is thought to be a membrane protein.
Probab=21.43 E-value=2.6e+02 Score=22.91 Aligned_cols=18 Identities=17% Similarity=0.523 Sum_probs=12.1
Q ss_pred cchhHHHHHHHHHHHhhC
Q 039186 18 CDHGVVNFLFLFLYLHAL 35 (334)
Q Consensus 18 ~~~~~~~~l~~~~~~~~~ 35 (334)
--|+|+.|+.++-+++..
T Consensus 54 ~t~~W~sfv~L~YF~~gv 71 (109)
T PF09842_consen 54 YTYAWASFVILLYFIHGV 71 (109)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 457888888776665443
No 250
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=21.42 E-value=40 Score=37.15 Aligned_cols=46 Identities=17% Similarity=0.453 Sum_probs=30.2
Q ss_pred CcCccccccccCCcceEEcCCCCCccchhHHHHHH-h-----cCCCcccccccc
Q 039186 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWL-S-----AHNTCPVCRANL 187 (334)
Q Consensus 140 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl-~-----~~~tCP~CR~~l 187 (334)
..|-.|.... .......+.|++.+|.+|+..|. . ....|+.|+..-
T Consensus 230 ~mC~~C~~tl--fn~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C 281 (889)
T KOG1356|consen 230 EMCDRCETTL--FNIHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLKC 281 (889)
T ss_pred hhhhhhcccc--cceeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHhc
Confidence 3577776553 33455667899999999999995 1 112466665543
No 251
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=21.24 E-value=1.2e+02 Score=24.03 Aligned_cols=19 Identities=21% Similarity=0.441 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 039186 67 ILVSVFFILGFFSVYIRQC 85 (334)
Q Consensus 67 ilv~~l~ll~~~~i~~r~c 85 (334)
+++++++.++++..|.|.|
T Consensus 10 ~V~V~IVclliya~YRR~~ 28 (92)
T PHA02681 10 VIVISIVCYIVIMMYRRSC 28 (92)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3344444555566666665
No 252
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=21.20 E-value=1.1e+02 Score=33.59 Aligned_cols=28 Identities=18% Similarity=0.387 Sum_probs=19.3
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhhhcC
Q 039186 62 AIVTVILV-SVFFILGFFSVYIRQCTERG 89 (334)
Q Consensus 62 ~iil~ilv-~~l~ll~~~~i~~r~c~~~~ 89 (334)
+++++||. +++++++|+++.+.+|+++-
T Consensus 273 ~fLl~ILG~~~livl~lL~vLl~yCrrkc 301 (807)
T PF10577_consen 273 VFLLAILGGTALIVLILLCVLLCYCRRKC 301 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 45566666 66677777788888887653
No 253
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.11 E-value=44 Score=29.47 Aligned_cols=44 Identities=20% Similarity=0.451 Sum_probs=29.8
Q ss_pred ccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186 143 AVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 189 (334)
Q Consensus 143 ~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 189 (334)
.||+.--...+..-.-|.=.+.||..|-.+-.. .||.|.+++..
T Consensus 8 qiC~NGH~~t~~~~~~p~~~~~fC~kCG~~tI~---~Cp~C~~~IrG 51 (158)
T PF10083_consen 8 QICLNGHVITDSYDKNPELREKFCSKCGAKTIT---SCPNCSTPIRG 51 (158)
T ss_pred HHccCccccccccccCchHHHHHHHHhhHHHHH---HCcCCCCCCCC
Confidence 467766554444444444457899999877543 49999998853
No 254
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.97 E-value=2.2e+02 Score=21.86 Aligned_cols=9 Identities=33% Similarity=0.608 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 039186 60 TMAIVTVIL 68 (334)
Q Consensus 60 ~~~iil~il 68 (334)
+++|+++++
T Consensus 4 ~lail~ivl 12 (71)
T COG3763 4 WLAILLIVL 12 (71)
T ss_pred HHHHHHHHH
Confidence 344433333
No 255
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=20.96 E-value=64 Score=28.46 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=12.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHH
Q 039186 56 KFNGTMAIVTVILVSVFFILGFF 78 (334)
Q Consensus 56 ~~~~~~~iil~ilv~~l~ll~~~ 78 (334)
.++.++.||++|+++++++++|+
T Consensus 77 ~~~iivgvi~~Vi~Iv~~Iv~~~ 99 (179)
T PF13908_consen 77 ITGIIVGVICGVIAIVVLIVCFC 99 (179)
T ss_pred eeeeeeehhhHHHHHHHhHhhhe
Confidence 45556666665555544444443
No 256
>PRK10220 hypothetical protein; Provisional
Probab=20.94 E-value=71 Score=26.59 Aligned_cols=10 Identities=30% Similarity=0.916 Sum_probs=6.3
Q ss_pred cCcccccccc
Q 039186 141 ECAVCLNEFG 150 (334)
Q Consensus 141 ~C~ICl~~~~ 150 (334)
.|+-|-.+|.
T Consensus 5 ~CP~C~seyt 14 (111)
T PRK10220 5 HCPKCNSEYT 14 (111)
T ss_pred cCCCCCCcce
Confidence 4777766653
No 257
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=20.82 E-value=3.1e+02 Score=23.16 Aligned_cols=31 Identities=16% Similarity=0.272 Sum_probs=16.4
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHhhhcCC
Q 039186 60 TMAIVTV-ILVSVFFILGFFSVYIRQCTERGR 90 (334)
Q Consensus 60 ~~~iil~-ilv~~l~ll~~~~i~~r~c~~~~~ 90 (334)
.+-.+|+ ++..++..++.+.+..|+|+++.+
T Consensus 85 aLp~VIGGLcaL~LaamGA~~LLrR~cRr~ar 116 (126)
T PF03229_consen 85 ALPLVIGGLCALTLAAMGAGALLRRCCRRAAR 116 (126)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444 444455556666666666665443
No 258
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=20.82 E-value=42 Score=35.92 Aligned_cols=9 Identities=0% Similarity=-0.141 Sum_probs=3.7
Q ss_pred CCchhHHHH
Q 039186 55 PKFNGTMAI 63 (334)
Q Consensus 55 ~~~~~~~~i 63 (334)
.+.|.++.+
T Consensus 267 ~NlWII~gV 275 (684)
T PF12877_consen 267 NNLWIIAGV 275 (684)
T ss_pred CCeEEEehH
Confidence 344433333
No 259
>TIGR02269 Myxococcus xanthus paralogous lipoprotein family TIGR02269. This family consists of at least 9 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. One appears truncated toward the N-terminus; the others are predicted lipoproteins. The function is unknown.
Probab=20.81 E-value=52 Score=30.03 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=19.0
Q ss_pred CCCccccccccCcHHHHHHHHh
Q 039186 272 PGQDCERFTLRLPAEVRSQLMN 293 (334)
Q Consensus 272 ~~~~~er~tlrlpe~v~~~~~~ 293 (334)
.|-+.-.|||.+|+||+++|-.
T Consensus 143 ~Gv~iHd~Tl~Ip~~vHrriH~ 164 (211)
T TIGR02269 143 RGVKIHDFTLVIPRHTHRRIHS 164 (211)
T ss_pred cCCChhheeeeccHHHHHHhhC
Confidence 4678889999999999988874
No 260
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=20.38 E-value=82 Score=29.85 Aligned_cols=10 Identities=10% Similarity=0.438 Sum_probs=4.6
Q ss_pred HHHhhCCccc
Q 039186 117 SVINTFPTFL 126 (334)
Q Consensus 117 ~~i~~lp~~~ 126 (334)
+.+..+|-+.
T Consensus 241 dfw~~lP~l~ 250 (268)
T PF09451_consen 241 DFWRSLPYLI 250 (268)
T ss_pred hHHHhchHHH
Confidence 3444555443
No 261
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=20.24 E-value=77 Score=29.45 Aligned_cols=10 Identities=20% Similarity=0.232 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 039186 60 TMAIVTVILV 69 (334)
Q Consensus 60 ~~~iil~ilv 69 (334)
.+-|+|+|++
T Consensus 15 iLNiaI~IV~ 24 (217)
T PF07423_consen 15 ILNIAIGIVS 24 (217)
T ss_pred hHHHHHHHHH
Confidence 3334444433
No 262
>PLN02195 cellulose synthase A
Probab=20.07 E-value=1.1e+02 Score=34.52 Aligned_cols=51 Identities=24% Similarity=0.470 Sum_probs=35.0
Q ss_pred CCCcCccccccccC---CcceEEcCCCCCccchhHHHHHH-hcCCCccccccccc
Q 039186 138 GSLECAVCLNEFGD---EETLRLIPKCSHVFHMDCIDAWL-SAHNTCPVCRANLV 188 (334)
Q Consensus 138 ~~~~C~ICl~~~~~---~~~~~~lp~C~H~FH~~CI~~Wl-~~~~tCP~CR~~l~ 188 (334)
+...|.||-+++.. ++.....-.|+---|..|.+==- ..++.||.|++...
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 34589999998743 34333334588889999984211 34567999998876
No 263
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=20.04 E-value=1.3e+02 Score=22.14 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039186 60 TMAIVTVILVSVFFILGFF 78 (334)
Q Consensus 60 ~~~iil~ilv~~l~ll~~~ 78 (334)
+..++++++++++++++++
T Consensus 38 ~~~i~~~~~i~~l~v~~~~ 56 (59)
T PF09889_consen 38 TQYIFFGIFILFLAVWIFM 56 (59)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555544444444433
No 264
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=20.02 E-value=61 Score=27.83 Aligned_cols=21 Identities=29% Similarity=0.768 Sum_probs=16.1
Q ss_pred CCCCCccchhHHHHHHhcCCCcccccccc
Q 039186 159 PKCSHVFHMDCIDAWLSAHNTCPVCRANL 187 (334)
Q Consensus 159 p~C~H~FH~~CI~~Wl~~~~tCP~CR~~l 187 (334)
++|||+|+. -+..||.|.+..
T Consensus 33 ~~CG~v~~P--------Pr~~Cp~C~~~~ 53 (140)
T COG1545 33 KKCGRVYFP--------PRAYCPKCGSET 53 (140)
T ss_pred CCCCeEEcC--------CcccCCCCCCCC
Confidence 379999886 356799998773
No 265
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=20.00 E-value=69 Score=29.99 Aligned_cols=26 Identities=27% Similarity=0.586 Sum_probs=18.3
Q ss_pred CcCccccccccCCcceEEcCCCCCccc
Q 039186 140 LECAVCLNEFGDEETLRLIPKCSHVFH 166 (334)
Q Consensus 140 ~~C~ICl~~~~~~~~~~~lp~C~H~FH 166 (334)
+.|++|...+.....-...+ .+|.|-
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~-~~h~fd 28 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICP-QNHQFD 28 (272)
T ss_pred ccCCCCCcchhcCCCEEEcC-CCCCCc
Confidence 57999999997555444444 688873
Done!