Query 039186
Match_columns 334
No_of_seqs 346 out of 2020
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 11:51:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039186.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039186hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.6 1.2E-16 4.1E-21 126.0 6.2 81 106-189 9-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 2.9E-16 9.8E-21 119.0 1.0 69 118-190 5-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.5 1.3E-14 4.5E-19 103.0 4.5 51 138-188 4-54 (55)
4 2ep4_A Ring finger protein 24; 99.5 5.6E-14 1.9E-18 105.8 5.8 52 138-190 14-65 (74)
5 2kiz_A E3 ubiquitin-protein li 99.5 4.5E-14 1.5E-18 104.9 5.2 53 137-190 12-64 (69)
6 2ecl_A Ring-box protein 2; RNF 99.4 2.8E-14 9.6E-19 110.2 3.1 52 138-189 14-76 (81)
7 2ect_A Ring finger protein 126 99.4 8.4E-14 2.9E-18 105.9 5.6 52 138-190 14-65 (78)
8 1v87_A Deltex protein 2; ring- 99.4 1.4E-13 4.9E-18 112.0 7.3 60 138-198 24-103 (114)
9 3dpl_R Ring-box protein 1; ubi 99.4 1.4E-13 4.7E-18 112.1 1.9 66 122-188 20-100 (106)
10 2ecm_A Ring finger and CHY zin 99.3 5.4E-13 1.9E-17 94.4 4.3 50 138-188 4-54 (55)
11 3ng2_A RNF4, snurf, ring finge 99.3 6.7E-13 2.3E-17 98.7 3.9 53 137-190 8-64 (71)
12 2ea6_A Ring finger protein 4; 99.3 6.1E-13 2.1E-17 98.1 3.2 51 138-189 14-68 (69)
13 2xeu_A Ring finger protein 4; 99.3 8.4E-13 2.9E-17 95.9 3.1 51 138-189 2-56 (64)
14 4a0k_B E3 ubiquitin-protein li 99.3 2.1E-13 7.3E-18 112.8 -2.5 68 122-189 31-112 (117)
15 2d8s_A Cellular modulator of i 99.2 5.7E-12 2E-16 97.4 5.4 51 138-190 14-71 (80)
16 1chc_A Equine herpes virus-1 r 99.2 4.2E-12 1.4E-16 93.8 4.1 49 137-188 3-51 (68)
17 2ecn_A Ring finger protein 141 99.2 2.2E-12 7.4E-17 96.0 2.3 49 137-190 13-61 (70)
18 2ct2_A Tripartite motif protei 99.2 1.3E-11 4.4E-16 95.3 6.1 52 138-190 14-69 (88)
19 2djb_A Polycomb group ring fin 99.2 9.3E-12 3.2E-16 93.3 5.1 50 138-190 14-63 (72)
20 2d8t_A Dactylidin, ring finger 99.2 9E-12 3.1E-16 93.1 3.0 48 138-189 14-61 (71)
21 2ct0_A Non-SMC element 1 homol 99.1 3.6E-11 1.2E-15 91.6 4.9 50 138-190 14-65 (74)
22 2ecy_A TNF receptor-associated 99.1 3.5E-11 1.2E-15 88.5 4.3 48 138-189 14-62 (66)
23 4ap4_A E3 ubiquitin ligase RNF 99.1 2.7E-11 9.3E-16 99.8 3.6 53 137-190 5-61 (133)
24 2yur_A Retinoblastoma-binding 99.1 4.1E-11 1.4E-15 90.4 3.9 49 138-189 14-64 (74)
25 4ayc_A E3 ubiquitin-protein li 99.1 3E-11 1E-15 101.9 3.3 47 139-189 53-99 (138)
26 2ysl_A Tripartite motif-contai 99.1 4.4E-11 1.5E-15 89.3 3.9 48 138-189 19-69 (73)
27 2csy_A Zinc finger protein 183 99.1 3.9E-11 1.3E-15 91.8 3.4 47 138-188 14-60 (81)
28 1t1h_A Gspef-atpub14, armadill 99.1 7.6E-11 2.6E-15 89.3 4.0 48 138-189 7-55 (78)
29 2ecv_A Tripartite motif-contai 99.1 1.7E-10 5.7E-15 88.0 5.9 48 138-189 18-71 (85)
30 1g25_A CDK-activating kinase a 99.1 1E-10 3.6E-15 85.7 4.3 50 139-189 3-55 (65)
31 2ecw_A Tripartite motif-contai 99.0 1.4E-10 4.6E-15 88.6 4.6 48 138-189 18-71 (85)
32 2y43_A E3 ubiquitin-protein li 99.0 8.8E-11 3E-15 93.2 3.6 48 139-189 22-69 (99)
33 2egp_A Tripartite motif-contai 99.0 6.2E-11 2.1E-15 89.7 2.3 48 138-189 11-65 (79)
34 3lrq_A E3 ubiquitin-protein li 99.0 6.9E-11 2.3E-15 94.4 2.7 48 139-189 22-70 (100)
35 2ckl_A Polycomb group ring fin 99.0 1.6E-10 5.3E-15 93.3 4.2 48 139-189 15-62 (108)
36 4ap4_A E3 ubiquitin ligase RNF 99.0 1.5E-10 5E-15 95.4 3.1 53 136-189 69-125 (133)
37 2ysj_A Tripartite motif-contai 99.0 2.5E-10 8.5E-15 83.0 3.9 42 138-183 19-63 (63)
38 3fl2_A E3 ubiquitin-protein li 99.0 3.2E-10 1.1E-14 93.6 4.5 47 139-189 52-99 (124)
39 2ecj_A Tripartite motif-contai 99.0 3.9E-10 1.4E-14 80.2 4.0 42 138-183 14-58 (58)
40 2ckl_B Ubiquitin ligase protei 99.0 3.1E-10 1.1E-14 98.2 4.1 48 139-189 54-102 (165)
41 3ztg_A E3 ubiquitin-protein li 98.9 3.1E-10 1.1E-14 88.6 3.5 48 138-188 12-61 (92)
42 1jm7_A BRCA1, breast cancer ty 98.9 6.5E-10 2.2E-14 89.5 4.3 47 139-189 21-70 (112)
43 1z6u_A NP95-like ring finger p 98.9 1.1E-09 3.7E-14 94.0 4.3 48 139-190 78-126 (150)
44 2kr4_A Ubiquitin conjugation f 98.8 1.2E-09 4.2E-14 84.8 3.2 47 138-188 13-59 (85)
45 3hct_A TNF receptor-associated 98.8 9.1E-10 3.1E-14 90.3 2.2 48 138-189 17-65 (118)
46 2kre_A Ubiquitin conjugation f 98.8 1.8E-09 6E-14 86.7 3.7 48 138-189 28-75 (100)
47 3l11_A E3 ubiquitin-protein li 98.8 6.2E-10 2.1E-14 90.6 0.7 47 139-189 15-62 (115)
48 1wgm_A Ubiquitin conjugation f 98.8 2.3E-09 7.7E-14 85.7 3.7 48 138-189 21-69 (98)
49 1rmd_A RAG1; V(D)J recombinati 98.8 1.6E-09 5.6E-14 88.2 3.0 47 139-189 23-70 (116)
50 1e4u_A Transcriptional repress 98.8 4.4E-09 1.5E-13 80.7 4.7 53 137-190 9-63 (78)
51 2vje_A E3 ubiquitin-protein li 98.8 2.8E-09 9.5E-14 78.5 2.8 48 139-188 8-56 (64)
52 3knv_A TNF receptor-associated 98.8 2.5E-09 8.6E-14 90.8 2.8 48 138-189 30-78 (141)
53 1bor_A Transcription factor PM 98.8 2.8E-09 9.5E-14 76.2 2.6 47 137-190 4-50 (56)
54 2y1n_A E3 ubiquitin-protein li 98.7 5.8E-09 2E-13 102.2 4.3 49 137-189 330-379 (389)
55 3k1l_B Fancl; UBC, ring, RWD, 98.7 2.8E-09 9.6E-14 102.4 1.8 54 136-189 305-373 (381)
56 2vje_B MDM4 protein; proto-onc 98.7 4.2E-09 1.4E-13 77.3 2.1 48 139-188 7-55 (63)
57 1jm7_B BARD1, BRCA1-associated 98.7 6.8E-09 2.3E-13 84.9 3.1 45 139-188 22-66 (117)
58 2c2l_A CHIP, carboxy terminus 98.6 1.6E-08 5.6E-13 93.0 3.0 47 138-188 207-254 (281)
59 1wim_A KIAA0161 protein; ring 98.6 2.8E-08 9.7E-13 78.0 3.5 48 138-186 4-61 (94)
60 2yu4_A E3 SUMO-protein ligase 98.6 1.8E-08 6.3E-13 79.5 2.4 46 138-186 6-59 (94)
61 4ic3_A E3 ubiquitin-protein li 98.6 7.9E-09 2.7E-13 78.0 0.1 43 139-189 24-67 (74)
62 3hcs_A TNF receptor-associated 98.5 2.8E-08 9.5E-13 86.1 2.2 48 138-189 17-65 (170)
63 1vyx_A ORF K3, K3RING; zinc-bi 98.5 9.7E-08 3.3E-12 69.6 3.7 48 137-188 4-58 (60)
64 2f42_A STIP1 homology and U-bo 98.4 6.6E-08 2.3E-12 85.4 2.6 48 138-189 105-153 (179)
65 2ea5_A Cell growth regulator w 98.4 2.6E-07 8.8E-12 68.8 4.0 44 138-189 14-58 (68)
66 2ecg_A Baculoviral IAP repeat- 98.3 2.2E-07 7.5E-12 70.0 3.2 43 139-189 25-68 (75)
67 2bay_A PRE-mRNA splicing facto 98.3 2.4E-07 8.3E-12 67.6 2.7 48 139-189 3-50 (61)
68 2yho_A E3 ubiquitin-protein li 98.3 2.5E-07 8.7E-12 70.8 2.1 43 139-189 18-61 (79)
69 3htk_C E3 SUMO-protein ligase 98.2 4.2E-07 1.4E-11 84.5 3.3 48 138-188 180-231 (267)
70 3t6p_A Baculoviral IAP repeat- 98.0 8.9E-07 3.1E-11 85.6 1.2 43 138-188 294-337 (345)
71 3vk6_A E3 ubiquitin-protein li 98.0 4.8E-06 1.6E-10 66.4 3.9 45 141-188 3-48 (101)
72 3nw0_A Non-structural maintena 97.9 1.2E-05 4.2E-10 73.8 5.7 50 138-190 179-230 (238)
73 2lri_C Autoimmune regulator; Z 95.0 0.016 5.6E-07 42.5 3.2 48 138-189 11-62 (66)
74 2ko5_A Ring finger protein Z; 94.7 0.048 1.6E-06 42.8 5.3 49 138-191 27-75 (99)
75 2jun_A Midline-1; B-BOX, TRIM, 93.9 0.035 1.2E-06 43.2 3.0 34 139-173 3-36 (101)
76 2l5u_A Chromodomain-helicase-D 85.7 0.57 1.9E-05 33.4 3.0 46 137-186 9-58 (61)
77 3o36_A Transcription intermedi 84.2 0.3 1E-05 42.3 1.2 45 138-186 3-51 (184)
78 1we9_A PHD finger family prote 83.3 0.53 1.8E-05 33.6 2.0 50 137-186 4-58 (64)
79 3u5n_A E3 ubiquitin-protein li 83.1 0.34 1.1E-05 42.9 1.0 46 137-186 5-54 (207)
80 1f62_A Transcription factor WS 79.5 0.96 3.3E-05 30.7 2.1 44 141-185 2-49 (51)
81 2cs3_A Protein C14ORF4, MY039 78.6 3 0.0001 31.7 4.8 39 137-176 13-52 (93)
82 1weo_A Cellulose synthase, cat 77.7 11 0.00036 29.2 7.7 53 138-190 15-71 (93)
83 2k16_A Transcription initiatio 77.7 0.73 2.5E-05 34.0 1.1 50 138-188 17-70 (75)
84 1mm2_A MI2-beta; PHD, zinc fin 77.6 0.66 2.3E-05 33.1 0.8 46 137-186 7-56 (61)
85 3lqh_A Histone-lysine N-methyl 76.2 1.2 4.2E-05 38.8 2.3 47 140-186 3-63 (183)
86 2ku3_A Bromodomain-containing 75.2 1.3 4.6E-05 32.6 2.0 50 137-186 14-66 (71)
87 2ysm_A Myeloid/lymphoid or mix 75.2 1.1 3.7E-05 35.5 1.6 47 137-184 5-55 (111)
88 3m62_A Ubiquitin conjugation f 75.1 1.5 5.1E-05 47.3 3.1 48 137-188 889-937 (968)
89 3i2d_A E3 SUMO-protein ligase 74.7 1.9 6.4E-05 41.8 3.4 45 140-188 250-299 (371)
90 2puy_A PHD finger protein 21A; 74.5 0.55 1.9E-05 33.2 -0.3 47 138-188 4-54 (60)
91 1nla_A Transcriptional repress 74.3 1.5 5.3E-05 31.8 2.0 19 275-293 6-24 (64)
92 2l43_A N-teminal domain from h 74.1 1.3 4.5E-05 33.9 1.8 51 138-188 24-77 (88)
93 2lv9_A Histone-lysine N-methyl 73.9 1 3.5E-05 35.2 1.1 45 138-184 27-74 (98)
94 2yql_A PHD finger protein 21A; 73.8 0.55 1.9E-05 32.8 -0.4 44 138-185 8-55 (56)
95 1wil_A KIAA1045 protein; ring 73.4 2.6 8.8E-05 32.4 3.2 34 138-173 14-47 (89)
96 1baz_A ARC repressor; transcri 73.3 1.3 4.6E-05 30.6 1.5 19 275-293 6-24 (53)
97 3v43_A Histone acetyltransfera 72.9 1.1 3.8E-05 35.7 1.1 45 141-185 63-111 (112)
98 2jwa_A Receptor tyrosine-prote 72.6 9.9 0.00034 25.5 5.6 27 58-85 12-38 (44)
99 1fp0_A KAP-1 corepressor; PHD 72.4 1.8 6.2E-05 33.4 2.2 46 137-186 23-72 (88)
100 3qoq_A Alginate and motility r 71.1 1.1 3.7E-05 33.1 0.6 20 274-293 17-36 (69)
101 1xwh_A Autoimmune regulator; P 70.9 1.5 5.1E-05 31.6 1.3 45 138-186 7-55 (66)
102 2klu_A T-cell surface glycopro 70.9 4.9 0.00017 29.4 4.0 29 62-90 11-39 (70)
103 2lbm_A Transcriptional regulat 70.3 4.1 0.00014 34.1 4.1 46 136-185 60-116 (142)
104 2ro1_A Transcription intermedi 68.5 1.2 4.2E-05 38.8 0.5 44 139-186 2-49 (189)
105 1wep_A PHF8; structural genomi 66.3 5.6 0.00019 29.5 3.7 49 138-187 11-64 (79)
106 2ri7_A Nucleosome-remodeling f 65.5 1.8 6.1E-05 36.8 0.9 48 138-186 7-59 (174)
107 1wev_A Riken cDNA 1110020M19; 63.9 2.6 9E-05 32.2 1.5 50 139-188 16-74 (88)
108 1wem_A Death associated transc 63.9 2.1 7.2E-05 31.5 0.9 49 138-188 15-72 (76)
109 2e6r_A Jumonji/ARID domain-con 63.7 0.98 3.4E-05 34.9 -1.0 49 138-187 15-67 (92)
110 2yt5_A Metal-response element- 62.2 4.6 0.00016 28.6 2.5 50 137-186 4-61 (66)
111 2vpb_A Hpygo1, pygopus homolog 61.4 6.7 0.00023 28.2 3.2 35 138-172 7-42 (65)
112 3shb_A E3 ubiquitin-protein li 60.7 1.8 6E-05 32.5 -0.0 44 141-185 28-76 (77)
113 3ql9_A Transcriptional regulat 59.5 10 0.00035 31.2 4.4 45 137-185 55-110 (129)
114 2yw8_A RUN and FYVE domain-con 57.5 7.5 0.00026 29.0 3.1 38 136-173 16-53 (82)
115 1z2q_A LM5-1; membrane protein 57.5 7.8 0.00027 29.1 3.2 36 138-173 20-55 (84)
116 1y02_A CARP2, FYVE-ring finger 57.1 2.1 7.2E-05 34.9 -0.2 50 139-188 19-68 (120)
117 2ks1_B Epidermal growth factor 56.3 15 0.00052 24.5 4.0 8 76-83 29-36 (44)
118 2l2t_A Receptor tyrosine-prote 55.9 23 0.0008 23.6 4.9 8 76-83 28-35 (44)
119 1wfk_A Zinc finger, FYVE domai 55.5 9 0.00031 29.1 3.2 52 138-189 8-66 (88)
120 1joc_A EEA1, early endosomal a 55.5 6.1 0.00021 32.1 2.4 34 139-172 69-102 (125)
121 3asl_A E3 ubiquitin-protein li 55.2 2.8 9.7E-05 30.6 0.3 44 141-185 20-68 (70)
122 2e6s_A E3 ubiquitin-protein li 55.0 3 0.0001 31.2 0.4 44 141-185 28-76 (77)
123 1weu_A Inhibitor of growth fam 55.0 7.3 0.00025 30.1 2.6 45 138-187 35-86 (91)
124 3t7l_A Zinc finger FYVE domain 54.7 6.7 0.00023 29.9 2.4 50 139-188 20-75 (90)
125 1z60_A TFIIH basal transcripti 54.7 7.4 0.00025 27.7 2.4 43 140-183 16-58 (59)
126 2kgg_A Histone demethylase jar 54.4 5.5 0.00019 27.1 1.7 44 141-184 4-52 (52)
127 1x4u_A Zinc finger, FYVE domai 54.0 8.9 0.0003 28.7 2.9 35 137-171 12-46 (84)
128 1wew_A DNA-binding family prot 53.7 6.1 0.00021 29.3 1.9 50 138-188 15-74 (78)
129 1wee_A PHD finger family prote 53.0 3.4 0.00012 30.1 0.4 49 138-187 15-67 (72)
130 2knc_A Integrin alpha-IIB; tra 52.1 52 0.0018 22.9 6.4 17 60-76 12-28 (54)
131 3v43_A Histone acetyltransfera 51.6 16 0.00056 28.7 4.3 46 139-184 5-62 (112)
132 4gne_A Histone-lysine N-methyl 50.7 13 0.00045 29.5 3.6 48 137-190 13-66 (107)
133 3ask_A E3 ubiquitin-protein li 50.7 4.4 0.00015 36.6 0.8 44 141-185 176-224 (226)
134 1vfy_A Phosphatidylinositol-3- 49.8 12 0.00041 27.2 3.0 33 140-172 12-44 (73)
135 4fo9_A E3 SUMO-protein ligase 49.8 13 0.00046 35.6 4.1 46 140-188 216-265 (360)
136 1dvp_A HRS, hepatocyte growth 49.4 8.6 0.00029 33.9 2.6 35 139-173 161-195 (220)
137 1mnt_A MNT repressor; transcri 48.0 8.1 0.00028 28.7 1.8 19 275-293 3-21 (76)
138 1wen_A Inhibitor of growth fam 48.0 15 0.00051 26.8 3.3 45 138-187 15-66 (71)
139 3zyq_A Hepatocyte growth facto 47.4 9.7 0.00033 33.9 2.6 50 139-188 164-221 (226)
140 2xb1_A Pygopus homolog 2, B-ce 47.1 10 0.00036 29.7 2.5 49 139-187 3-62 (105)
141 2cu8_A Cysteine-rich protein 2 46.6 19 0.00064 25.7 3.7 39 139-188 9-47 (76)
142 3arc_H Photosystem II reaction 46.5 28 0.00096 25.1 4.3 34 48-81 15-48 (65)
143 1x61_A Thyroid receptor intera 45.4 23 0.00077 24.8 3.9 40 139-188 5-44 (72)
144 1wyh_A SLIM 2, skeletal muscle 45.0 23 0.0008 24.7 3.9 41 139-189 5-45 (72)
145 1u9p_A PARC; unknown function; 44.3 8.3 0.00028 31.4 1.5 19 275-293 17-35 (120)
146 1zbd_B Rabphilin-3A; G protein 44.2 14 0.00048 30.4 2.9 50 137-186 53-107 (134)
147 2ysm_A Myeloid/lymphoid or mix 43.5 4.7 0.00016 31.7 -0.1 45 141-186 56-104 (111)
148 3mpx_A FYVE, rhogef and PH dom 43.5 4.9 0.00017 38.6 0.0 50 138-187 374-430 (434)
149 2k1k_A Ephrin type-A receptor 43.3 30 0.001 22.3 3.7 19 60-78 13-31 (38)
150 2kwj_A Zinc finger protein DPF 43.0 17 0.00057 28.8 3.1 45 140-184 2-59 (114)
151 2kwj_A Zinc finger protein DPF 42.0 3.2 0.00011 33.1 -1.4 47 141-188 60-110 (114)
152 1x4l_A Skeletal muscle LIM-pro 41.9 27 0.00092 24.5 3.9 40 139-188 5-46 (72)
153 2dj7_A Actin-binding LIM prote 41.9 20 0.0007 26.1 3.2 39 139-188 15-53 (80)
154 3o70_A PHD finger protein 13; 41.5 7.1 0.00024 28.3 0.6 47 137-185 17-66 (68)
155 1iml_A CRIP, cysteine rich int 41.3 15 0.00052 26.2 2.4 36 142-188 3-38 (76)
156 1x4k_A Skeletal muscle LIM-pro 41.0 20 0.00068 25.1 3.0 39 140-188 6-44 (72)
157 2l8s_A Integrin alpha-1; trans 39.7 93 0.0032 21.6 6.1 16 60-75 9-24 (54)
158 1x63_A Skeletal muscle LIM-pro 39.2 29 0.001 24.9 3.8 41 139-189 15-55 (82)
159 1g47_A Pinch protein; LIM doma 38.2 23 0.0008 25.1 3.0 42 138-189 10-51 (77)
160 2k21_A Potassium voltage-gated 38.1 57 0.002 26.8 5.5 33 58-90 51-83 (138)
161 2gmg_A Hypothetical protein PF 37.6 8.1 0.00028 30.7 0.4 27 160-191 72-98 (105)
162 2co8_A NEDD9 interacting prote 36.5 27 0.00091 25.5 3.1 40 139-189 15-54 (82)
163 1afo_A Glycophorin A; integral 35.8 85 0.0029 20.4 4.9 28 59-86 11-38 (40)
164 2l2t_A Receptor tyrosine-prote 35.8 89 0.0031 20.7 5.3 30 60-89 9-38 (44)
165 1x68_A FHL5 protein; four-and- 35.5 35 0.0012 24.2 3.6 40 139-188 5-46 (76)
166 2pv0_B DNA (cytosine-5)-methyl 35.4 25 0.00084 34.1 3.5 44 137-184 91-146 (386)
167 3f6q_B LIM and senescent cell 35.3 25 0.00086 24.3 2.7 41 139-189 11-51 (72)
168 3kqi_A GRC5, PHD finger protei 35.2 14 0.0005 26.9 1.4 48 139-187 10-62 (75)
169 3a1b_A DNA (cytosine-5)-methyl 34.1 32 0.0011 29.2 3.6 35 137-175 77-113 (159)
170 2d8z_A Four and A half LIM dom 34.0 35 0.0012 23.6 3.4 38 139-188 5-42 (70)
171 1a7i_A QCRP2 (LIM1); LIM domai 33.7 18 0.0006 26.2 1.7 40 139-189 7-46 (81)
172 1x62_A C-terminal LIM domain p 33.7 27 0.00093 25.1 2.8 38 139-188 15-52 (79)
173 3mjh_B Early endosome antigen 33.3 4.6 0.00016 25.6 -1.4 16 139-154 5-20 (34)
174 3kv5_D JMJC domain-containing 33.3 11 0.00038 37.6 0.7 49 138-187 36-89 (488)
175 2vnf_A ING 4, P29ING4, inhibit 33.1 14 0.00046 26.0 0.9 43 138-185 9-58 (60)
176 3c6w_A P28ING5, inhibitor of g 32.3 15 0.0005 25.8 1.0 43 138-185 8-57 (59)
177 2jmo_A Parkin; IBR, E3 ligase, 31.9 5.4 0.00018 29.7 -1.4 19 160-180 55-73 (80)
178 2d8y_A Eplin protein; LIM doma 31.7 36 0.0012 25.1 3.3 40 139-189 15-54 (91)
179 2zet_C Melanophilin; complex, 30.2 26 0.00091 29.4 2.4 46 138-185 67-116 (153)
180 2l4z_A DNA endonuclease RBBP8, 30.2 27 0.00091 27.8 2.4 39 139-188 61-99 (123)
181 2d8x_A Protein pinch; LIM doma 30.0 35 0.0012 23.7 2.8 39 139-189 5-43 (70)
182 2rsd_A E3 SUMO-protein ligase 29.9 7.6 0.00026 27.9 -0.9 46 139-185 10-64 (68)
183 2dar_A PDZ and LIM domain prot 29.5 29 0.00098 25.6 2.3 39 139-189 25-63 (90)
184 1x64_A Alpha-actinin-2 associa 29.4 46 0.0016 24.4 3.5 39 139-189 25-63 (89)
185 2o35_A Hypothetical protein DU 28.6 20 0.00069 28.2 1.3 12 164-175 42-53 (105)
186 3fyb_A Protein of unknown func 28.5 20 0.0007 28.1 1.3 12 164-175 41-52 (104)
187 1iij_A ERBB-2 receptor protein 28.5 25 0.00087 22.3 1.5 17 68-84 17-33 (35)
188 2cpg_A REPA protein, transcrip 28.5 15 0.00052 23.5 0.5 26 277-302 3-30 (45)
189 2jwa_A Receptor tyrosine-prote 28.3 90 0.0031 20.7 4.3 32 59-90 9-40 (44)
190 2l3k_A Rhombotin-2, linker, LI 28.2 26 0.0009 27.6 2.0 37 141-187 10-46 (123)
191 2cor_A Pinch protein; LIM doma 27.3 55 0.0019 23.5 3.5 39 139-189 15-53 (79)
192 2ay0_A Bifunctional PUTA prote 27.3 15 0.00051 25.7 0.3 27 277-303 4-32 (58)
193 2egq_A FHL1 protein; LIM domai 27.2 42 0.0014 23.7 2.8 40 139-188 15-57 (77)
194 2jo1_A Phospholemman; FXYD1, N 26.6 1E+02 0.0035 22.6 4.7 31 60-90 15-45 (72)
195 2cur_A Skeletal muscle LIM-pro 26.6 40 0.0014 23.3 2.5 38 139-188 5-42 (69)
196 2ehe_A Four and A half LIM dom 26.4 43 0.0015 24.0 2.8 39 140-188 16-54 (82)
197 2d8v_A Zinc finger FYVE domain 25.7 48 0.0016 24.1 2.7 30 138-172 7-37 (67)
198 2g6q_A Inhibitor of growth pro 25.7 18 0.0006 25.7 0.4 45 138-185 10-59 (62)
199 2cup_A Skeletal muscle LIM-pro 25.4 62 0.0021 24.0 3.6 37 140-187 6-43 (101)
200 1nyp_A Pinch protein; LIM doma 24.4 35 0.0012 23.4 1.8 38 139-188 5-42 (66)
201 2ct7_A Ring finger protein 31; 24.2 8.9 0.0003 28.8 -1.5 44 142-185 28-75 (86)
202 2jmi_A Protein YNG1, ING1 homo 24.1 25 0.00087 26.9 1.1 46 137-185 24-75 (90)
203 2k1a_A Integrin alpha-IIB; sin 24.0 1.6E+02 0.0053 19.3 5.1 17 60-76 10-26 (42)
204 1v6g_A Actin binding LIM prote 23.9 61 0.0021 23.1 3.2 37 140-188 16-52 (81)
205 1yuz_A Nigerythrin; rubrythrin 23.8 18 0.00062 31.6 0.3 26 154-186 170-195 (202)
206 1wig_A KIAA1808 protein; LIM d 23.3 65 0.0022 22.7 3.2 38 139-188 5-42 (73)
207 2gpe_A Bifunctional protein PU 23.3 19 0.00066 23.9 0.3 27 277-303 4-32 (52)
208 1wd2_A Ariadne-1 protein homol 22.8 18 0.00062 25.5 0.0 36 139-174 6-45 (60)
209 2k9j_B Integrin beta-3; transm 22.7 1.3E+02 0.0045 19.6 4.3 8 60-67 9-16 (43)
210 2jp3_A FXYD domain-containing 22.7 94 0.0032 22.5 3.8 30 60-89 16-45 (67)
211 2kog_A Vesicle-associated memb 22.2 95 0.0033 24.8 4.3 9 57-65 92-100 (119)
212 1x6a_A LIMK-2, LIM domain kina 22.0 57 0.002 23.2 2.7 37 140-188 16-52 (81)
213 2pk7_A Uncharacterized protein 22.0 21 0.0007 26.1 0.2 19 171-189 2-20 (69)
214 1z65_A PRPLP, prion-like prote 21.5 58 0.002 19.8 2.1 14 21-34 8-21 (30)
215 2xjy_A Rhombotin-2; oncoprotei 20.9 74 0.0025 24.8 3.4 50 137-188 27-77 (131)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.65 E-value=1.2e-16 Score=126.02 Aligned_cols=81 Identities=26% Similarity=0.625 Sum_probs=69.0
Q ss_pred cccccCCCCCHHHHhhCCccchhhhHhhhcCCCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccc
Q 039186 106 RSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRA 185 (334)
Q Consensus 106 ~~~~~~~gl~~~~i~~lp~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~ 185 (334)
.......|++++.++.+|.+.+..... .......|+||++.|..++.++.+| |+|.||..||..|+..+.+||+||+
T Consensus 9 ~~~~~~~~~s~~~i~~lp~~~~~~~~~--~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~ 85 (91)
T 2l0b_A 9 SHMVANPPASKESIDALPEILVTEDHG--AVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRC 85 (91)
T ss_dssp CCSSCCCCCCHHHHHTSCEEECCTTCS--SSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCC
T ss_pred CCCcCCCCCCHHHHHhCCCeeeccccc--ccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCc
Confidence 345668899999999999998875432 2245678999999999988888898 9999999999999999999999999
Q ss_pred cccC
Q 039186 186 NLVP 189 (334)
Q Consensus 186 ~l~~ 189 (334)
.+..
T Consensus 86 ~~~~ 89 (91)
T 2l0b_A 86 MFPP 89 (91)
T ss_dssp BSSC
T ss_pred cCCC
Confidence 8864
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=2.9e-16 Score=119.02 Aligned_cols=69 Identities=35% Similarity=0.894 Sum_probs=57.3
Q ss_pred HHhhCCccchhhhHhhhcCCCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccCC
Q 039186 118 VINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ 190 (334)
Q Consensus 118 ~i~~lp~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 190 (334)
.++.+|.++|.... ...+...|+||++.|..++.++.+| |+|.||..||..|+..+.+||+||+++.+.
T Consensus 5 ~i~~lp~~~~~~~~---~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 5 SSGQLPSYRFNPNN---HQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCSSCCCEEBCSSS---CSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred hHhhCCcEEecCcc---ccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 45677887776432 2235678999999999998888898 999999999999999999999999998754
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.50 E-value=1.3e-14 Score=103.02 Aligned_cols=51 Identities=51% Similarity=1.228 Sum_probs=46.4
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
+..+|+||++.|..++.+..++.|+|.||..||.+|+..+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 467899999999998888888779999999999999999999999999874
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=5.6e-14 Score=105.81 Aligned_cols=52 Identities=35% Similarity=0.891 Sum_probs=47.4
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccCC
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ 190 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 190 (334)
....|+||++.|..+..+..++ |+|.||..||..|+..+.+||+||+.+...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 4678999999999998888888 999999999999999889999999998753
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=4.5e-14 Score=104.93 Aligned_cols=53 Identities=36% Similarity=0.993 Sum_probs=47.6
Q ss_pred CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccCC
Q 039186 137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ 190 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 190 (334)
.....|+||++.|..++.++.+| |+|.||..||..|+..+.+||+||+.+...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 35678999999998888888888 999999999999999989999999998754
No 6
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=2.8e-14 Score=110.18 Aligned_cols=52 Identities=31% Similarity=0.790 Sum_probs=42.9
Q ss_pred CCCcCccccccccC-----------CcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186 138 GSLECAVCLNEFGD-----------EETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 189 (334)
Q Consensus 138 ~~~~C~ICl~~~~~-----------~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 189 (334)
++..|+||+++|.+ ++.++.++.|+|.||..||.+||..+.+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 45679999988854 34455666699999999999999999999999998864
No 7
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.44 E-value=8.4e-14 Score=105.85 Aligned_cols=52 Identities=46% Similarity=1.112 Sum_probs=47.5
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccCC
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ 190 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 190 (334)
...+|+||++.|..++.+..++ |+|.||..||..|+..+.+||+||+.+...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 4678999999999988888888 999999999999999889999999998754
No 8
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.44 E-value=1.4e-13 Score=111.97 Aligned_cols=60 Identities=27% Similarity=0.603 Sum_probs=47.1
Q ss_pred CCCcCccccccccCCc---------------ceEEcCCCCCccchhHHHHHH-----hcCCCcccccccccCCCCCCCCC
Q 039186 138 GSLECAVCLNEFGDEE---------------TLRLIPKCSHVFHMDCIDAWL-----SAHNTCPVCRANLVPQPGETPSS 197 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~---------------~~~~lp~C~H~FH~~CI~~Wl-----~~~~tCP~CR~~l~~~~~~~~~~ 197 (334)
.+.+|+||++.|..+. .+++++ |+|.||..||..|+ ..+.+||+||+.+....+..+.+
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~qp~g 102 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPWG 102 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTTS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCCCCC
Confidence 3568999999997653 344666 99999999999999 45668999999998766655544
Q ss_pred C
Q 039186 198 F 198 (334)
Q Consensus 198 ~ 198 (334)
.
T Consensus 103 ~ 103 (114)
T 1v87_A 103 K 103 (114)
T ss_dssp S
T ss_pred e
Confidence 3
No 9
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.35 E-value=1.4e-13 Score=112.06 Aligned_cols=66 Identities=29% Similarity=0.529 Sum_probs=50.5
Q ss_pred CCccchhhhHhhhcCCCCCcCccccccccCCc---------------ceEEcCCCCCccchhHHHHHHhcCCCccccccc
Q 039186 122 FPTFLYSAVRELKIGKGSLECAVCLNEFGDEE---------------TLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRAN 186 (334)
Q Consensus 122 lp~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~---------------~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~ 186 (334)
+...+++.+.....+..+..|+||++.|...- .++.++ |+|.||..||.+||..+.+||+||++
T Consensus 20 ~~ik~~~~v~~w~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~ 98 (106)
T 3dpl_R 20 FEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNRE 98 (106)
T ss_dssp EEEEEEEEEEEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSB
T ss_pred eeEEEEEEeeEeecCCCCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCc
Confidence 33344444444445556789999999997541 255566 99999999999999999999999998
Q ss_pred cc
Q 039186 187 LV 188 (334)
Q Consensus 187 l~ 188 (334)
+.
T Consensus 99 ~~ 100 (106)
T 3dpl_R 99 WE 100 (106)
T ss_dssp CC
T ss_pred ce
Confidence 64
No 10
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.35 E-value=5.4e-13 Score=94.43 Aligned_cols=50 Identities=28% Similarity=0.800 Sum_probs=42.9
Q ss_pred CCCcCccccccccCCc-ceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186 138 GSLECAVCLNEFGDEE-TLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~-~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
+..+|+||++.|.+++ .+..++ |+|.||..||..|+..+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4678999999996543 466676 9999999999999998899999998874
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.32 E-value=6.7e-13 Score=98.69 Aligned_cols=53 Identities=28% Similarity=0.792 Sum_probs=44.7
Q ss_pred CCCCcCccccccccCC----cceEEcCCCCCccchhHHHHHHhcCCCcccccccccCC
Q 039186 137 KGSLECAVCLNEFGDE----ETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ 190 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 190 (334)
.+...|+||++.|.++ .....++ |||.||..||..|+..+.+||+||+.+...
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 3567899999999764 4456676 999999999999999989999999998743
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=6.1e-13 Score=98.12 Aligned_cols=51 Identities=29% Similarity=0.812 Sum_probs=43.2
Q ss_pred CCCcCccccccccCC----cceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186 138 GSLECAVCLNEFGDE----ETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 189 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 189 (334)
+...|+||++.|.++ ..+..++ |+|.||..||..|+..+.+||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 467899999999764 3345676 99999999999999988999999998753
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.30 E-value=8.4e-13 Score=95.93 Aligned_cols=51 Identities=27% Similarity=0.754 Sum_probs=43.4
Q ss_pred CCCcCccccccccCC----cceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186 138 GSLECAVCLNEFGDE----ETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 189 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 189 (334)
+..+|+||++.+.++ +.+..++ |||.||..||..|+..+.+||+||+.+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 357899999999764 3445666 99999999999999988999999999864
No 14
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.25 E-value=2.1e-13 Score=112.84 Aligned_cols=68 Identities=26% Similarity=0.462 Sum_probs=9.6
Q ss_pred CCccchhhhHhhhcCCCCCcCccccccccCCc--------------ceEEcCCCCCccchhHHHHHHhcCCCcccccccc
Q 039186 122 FPTFLYSAVRELKIGKGSLECAVCLNEFGDEE--------------TLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANL 187 (334)
Q Consensus 122 lp~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~--------------~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l 187 (334)
+...+++.+.....+..++.|+||++.|.++. ....++.|+|.||..||.+||..+.+||+||+++
T Consensus 31 ~~ikkw~ava~w~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 31 FEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp EEEEEEEEEEEEEECCCC--------------------------------------------------------------
T ss_pred eEEEEEEEEEEEeecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 34444555555555556789999999997531 1222234999999999999999999999999987
Q ss_pred cC
Q 039186 188 VP 189 (334)
Q Consensus 188 ~~ 189 (334)
..
T Consensus 111 ~~ 112 (117)
T 4a0k_B 111 EF 112 (117)
T ss_dssp --
T ss_pred ee
Confidence 53
No 15
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=5.7e-12 Score=97.42 Aligned_cols=51 Identities=27% Similarity=0.795 Sum_probs=43.2
Q ss_pred CCCcCccccccccCCcceEEcCCCC-----CccchhHHHHHHhcC--CCcccccccccCC
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCS-----HVFHMDCIDAWLSAH--NTCPVCRANLVPQ 190 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~-----H~FH~~CI~~Wl~~~--~tCP~CR~~l~~~ 190 (334)
++..|.||+++|.+++.+ ++| |+ |.||..||++||..+ .+||+||+.+...
T Consensus 14 ~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 457899999999877776 577 96 999999999999765 4899999998654
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.24 E-value=4.2e-12 Score=93.75 Aligned_cols=49 Identities=29% Similarity=0.800 Sum_probs=42.3
Q ss_pred CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186 137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
+....|+||++.+.++ ...+| |||.||..||..|+..+.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~--~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSNY--SMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCSC--EEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCCeeCCccccCC--cEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 3467899999998654 45676 9999999999999998899999999885
No 17
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=2.2e-12 Score=95.99 Aligned_cols=49 Identities=35% Similarity=0.988 Sum_probs=42.5
Q ss_pred CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccCC
Q 039186 137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ 190 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 190 (334)
.+...|+||++.+.+ ..+| |+|.||..||..|+..+.+||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 346789999999876 4566 999999999999999889999999998743
No 18
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1.3e-11 Score=95.29 Aligned_cols=52 Identities=27% Similarity=0.721 Sum_probs=43.8
Q ss_pred CCCcCccccccccCCcc-eEEcCCCCCccchhHHHHHHhcC---CCcccccccccCC
Q 039186 138 GSLECAVCLNEFGDEET-LRLIPKCSHVFHMDCIDAWLSAH---NTCPVCRANLVPQ 190 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~-~~~lp~C~H~FH~~CI~~Wl~~~---~tCP~CR~~l~~~ 190 (334)
+..+|+||++.|.+.+. .+.++ |||.||..||..|+..+ .+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred CCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 46789999999987654 56676 99999999999999865 6899999988643
No 19
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=9.3e-12 Score=93.30 Aligned_cols=50 Identities=24% Similarity=0.535 Sum_probs=42.1
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccCC
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ 190 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 190 (334)
....|+||++.|.++ +.+++ |+|.||..||..|+..+.+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 14 PYILCSICKGYLIDA--TTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp GGGSCTTTSSCCSSC--EECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCCCChHHHCc--CEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 357899999999764 33345 999999999999998888999999998754
No 20
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=9e-12 Score=93.14 Aligned_cols=48 Identities=29% Similarity=0.643 Sum_probs=41.4
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 189 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 189 (334)
+...|+||++.+.++ ..++ |+|.||..||..|+..+.+||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 14 TVPECAICLQTCVHP---VSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SCCBCSSSSSBCSSE---EEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCccCCcccCCC---EEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 457899999998665 3456 99999999999999988999999999864
No 21
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=3.6e-11 Score=91.63 Aligned_cols=50 Identities=16% Similarity=0.538 Sum_probs=42.2
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcC--CCcccccccccCC
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH--NTCPVCRANLVPQ 190 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~--~tCP~CR~~l~~~ 190 (334)
...+|+||++.|..++... .|+|.||..||.+||+.+ .+||+||+++...
T Consensus 14 ~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 4568999999998765442 599999999999999877 7899999988643
No 22
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=3.5e-11 Score=88.52 Aligned_cols=48 Identities=25% Similarity=0.618 Sum_probs=40.8
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHH-hcCCCcccccccccC
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWL-SAHNTCPVCRANLVP 189 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl-~~~~tCP~CR~~l~~ 189 (334)
+...|+||++.+.++.. ++ |||.||..||..|+ ....+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQ---TE-CGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCEECTTTCCEESSCCC---CS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCCCCCCChHhcCeeE---CC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 46789999999987654 45 99999999999999 456689999999864
No 23
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.11 E-value=2.7e-11 Score=99.83 Aligned_cols=53 Identities=28% Similarity=0.792 Sum_probs=44.8
Q ss_pred CCCCcCccccccccCC----cceEEcCCCCCccchhHHHHHHhcCCCcccccccccCC
Q 039186 137 KGSLECAVCLNEFGDE----ETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ 190 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 190 (334)
.+...|+||++.|.++ .....++ |||.||..||.+|+..+.+||+||+.+...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 3567999999999765 3446666 999999999999999999999999998643
No 24
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.10 E-value=4.1e-11 Score=90.41 Aligned_cols=49 Identities=33% Similarity=0.706 Sum_probs=40.1
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcC--CCcccccccccC
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH--NTCPVCRANLVP 189 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~--~tCP~CR~~l~~ 189 (334)
....|+||++.|.++.. ++.|||.||..||..|+..+ .+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~p~~---~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 14 DELLCLICKDIMTDAVV---IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GGGSCSSSCCCCTTCEE---CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCcCCChHHhCCeE---cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 35789999999987643 44499999999999999765 589999997653
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.10 E-value=3e-11 Score=101.90 Aligned_cols=47 Identities=30% Similarity=0.878 Sum_probs=40.9
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 189 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 189 (334)
+..|+||++.|.++ .++| |||.||..||..|+..+.+||+||.++..
T Consensus 53 ~~~C~iC~~~~~~~---~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---VTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSSE---EEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cCCCcccCcccCCc---eECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 46899999999765 3456 99999999999999999999999999853
No 26
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=4.4e-11 Score=89.30 Aligned_cols=48 Identities=25% Similarity=0.671 Sum_probs=39.9
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHh---cCCCcccccccccC
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLS---AHNTCPVCRANLVP 189 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~---~~~tCP~CR~~l~~ 189 (334)
....|+||++.|.++ ..++ |||.||..||..|+. ...+||+||..+..
T Consensus 19 ~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 19 EEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCBCTTTCSBCSSE---EECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred cCCEeccCCcccCCe---EEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 467999999998754 3445 999999999999996 45589999999864
No 27
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=3.9e-11 Score=91.81 Aligned_cols=47 Identities=21% Similarity=0.519 Sum_probs=41.0
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
....|+||++.|.++. +++ |+|.||..||..|+....+||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQNPV---VTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCSEE---ECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcCee---Ecc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4678999999996643 466 9999999999999998889999999985
No 28
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.06 E-value=7.6e-11 Score=89.34 Aligned_cols=48 Identities=25% Similarity=0.605 Sum_probs=41.1
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhc-CCCcccccccccC
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA-HNTCPVCRANLVP 189 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~ 189 (334)
..+.|+||++.|.++.. ++ |||.||..||..|+.. +.+||+||..+..
T Consensus 7 ~~~~C~IC~~~~~~Pv~---~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVI---VS-TGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCCSSEEE---ET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred ccCCCCCccccccCCEE---cC-CCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 46799999999987643 45 9999999999999986 7789999998864
No 29
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.7e-10 Score=88.05 Aligned_cols=48 Identities=29% Similarity=0.775 Sum_probs=41.0
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhc------CCCcccccccccC
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA------HNTCPVCRANLVP 189 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~------~~tCP~CR~~l~~ 189 (334)
+...|+||++.+.++.. ++ |+|.||..||..|+.. ...||+||..+..
T Consensus 18 ~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELLTQPLS---LD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCCSSCBC---CS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcccCCcee---CC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 46789999999977643 45 9999999999999976 6789999999874
No 30
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.05 E-value=1e-10 Score=85.69 Aligned_cols=50 Identities=20% Similarity=0.540 Sum_probs=40.5
Q ss_pred CCcCccccc-cccCCcce-EEcCCCCCccchhHHHHHHhc-CCCcccccccccC
Q 039186 139 SLECAVCLN-EFGDEETL-RLIPKCSHVFHMDCIDAWLSA-HNTCPVCRANLVP 189 (334)
Q Consensus 139 ~~~C~ICl~-~~~~~~~~-~~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~ 189 (334)
+..|+||++ .+.++... ..++ |||.||..||..|+.. ..+||+||..+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 568999999 78776543 3455 9999999999999754 4579999999864
No 31
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.04 E-value=1.4e-10 Score=88.55 Aligned_cols=48 Identities=27% Similarity=0.654 Sum_probs=40.9
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhc------CCCcccccccccC
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA------HNTCPVCRANLVP 189 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~------~~tCP~CR~~l~~ 189 (334)
+...|+||++.|.++. .++ |+|.||..||..|+.. ...||+||..+..
T Consensus 18 ~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLELLKEPV---SAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSCCSSCE---ECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChhhCcce---eCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 4578999999997764 466 9999999999999976 5689999999864
No 32
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.04 E-value=8.8e-11 Score=93.18 Aligned_cols=48 Identities=29% Similarity=0.714 Sum_probs=40.7
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 189 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 189 (334)
...|+||++.|.++ +.+++ |||.||..||..|+..+.+||+||..+..
T Consensus 22 ~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNIA--MIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChhhCCc--CEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 46899999999764 32235 99999999999999988899999998864
No 33
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.03 E-value=6.2e-11 Score=89.71 Aligned_cols=48 Identities=23% Similarity=0.624 Sum_probs=41.0
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhc-------CCCcccccccccC
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA-------HNTCPVCRANLVP 189 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-------~~tCP~CR~~l~~ 189 (334)
+...|+||++.|.++.. ++ |||.||..||..|+.. ..+||+||..+..
T Consensus 11 ~~~~C~IC~~~~~~p~~---l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 11 EEVTCPICLELLTEPLS---LD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCEETTTTEECSSCCC---CS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cCCCCcCCCcccCCeeE---CC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 46789999999987644 45 9999999999999976 5689999999864
No 34
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.03 E-value=6.9e-11 Score=94.42 Aligned_cols=48 Identities=31% Similarity=0.781 Sum_probs=40.3
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcC-CCcccccccccC
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH-NTCPVCRANLVP 189 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~-~tCP~CR~~l~~ 189 (334)
...|+||++.|.++ +..++ |||.||..||..|+... .+||+||.++..
T Consensus 22 ~~~C~IC~~~~~~p--~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 22 VFRCFICMEKLRDA--RLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCccCCccccCc--cccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 57899999999764 32255 99999999999999877 699999999853
No 35
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.01 E-value=1.6e-10 Score=93.25 Aligned_cols=48 Identities=31% Similarity=0.720 Sum_probs=41.4
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 189 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 189 (334)
...|+||++.|.++ +.+++ |||.||..||..|+..+.+||+||..+..
T Consensus 15 ~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFIDA--TTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCCccCChHHhCc--CEeCC-CCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 57899999999764 33346 99999999999999988999999999864
No 36
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.99 E-value=1.5e-10 Score=95.39 Aligned_cols=53 Identities=30% Similarity=0.824 Sum_probs=44.1
Q ss_pred CCCCCcCccccccccCC----cceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186 136 GKGSLECAVCLNEFGDE----ETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 189 (334)
Q Consensus 136 ~~~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 189 (334)
..+...|+||++.|.++ .....++ |||.||..||++|+..+.+||+||+++..
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 34567899999999753 2335565 99999999999999999999999999864
No 37
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=2.5e-10 Score=83.04 Aligned_cols=42 Identities=29% Similarity=0.740 Sum_probs=35.3
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHh---cCCCcccc
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLS---AHNTCPVC 183 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~---~~~tCP~C 183 (334)
+...|+||++.|.++. .++ |||.||..||..|+. ...+||+|
T Consensus 19 ~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQKPV---TID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSSCE---ECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhCCeE---EeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4678999999997653 345 999999999999997 45589998
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.97 E-value=3.2e-10 Score=93.64 Aligned_cols=47 Identities=28% Similarity=0.598 Sum_probs=39.9
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCC-CcccccccccC
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN-TCPVCRANLVP 189 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~-tCP~CR~~l~~ 189 (334)
...|+||++.|.++. .++ |||.||..||..|+..+. +||+||..+..
T Consensus 52 ~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRPI---TTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSEE---ECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCcE---Eee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 468999999998653 345 999999999999997554 89999999865
No 39
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=3.9e-10 Score=80.22 Aligned_cols=42 Identities=36% Similarity=0.863 Sum_probs=35.1
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHH---hcCCCcccc
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWL---SAHNTCPVC 183 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl---~~~~tCP~C 183 (334)
....|+||++.+.++.. ++ |+|.||..||..|+ ..+.+||+|
T Consensus 14 ~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVI---IE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSCCC---CS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCccEe---CC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 46789999999987643 45 99999999999995 456689998
No 40
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.95 E-value=3.1e-10 Score=98.17 Aligned_cols=48 Identities=35% Similarity=0.809 Sum_probs=40.4
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhc-CCCcccccccccC
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA-HNTCPVCRANLVP 189 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~ 189 (334)
...|+||++.|.++ +.+++ |||.||..||..|+.. +.+||+||..+..
T Consensus 54 ~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKNT--MTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhhCc--CEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 45899999999764 43456 9999999999999986 7789999999854
No 41
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.95 E-value=3.1e-10 Score=88.60 Aligned_cols=48 Identities=33% Similarity=0.730 Sum_probs=39.6
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcC--CCccccccccc
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH--NTCPVCRANLV 188 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~--~tCP~CR~~l~ 188 (334)
..+.|+||++.|.++. .++.|||.||..||..|+... .+||+||..+.
T Consensus 12 ~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDIMTDAV---VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEECSSCE---ECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCCCCCCChhhcCce---ECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 4678999999998764 344499999999999999643 58999999874
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.92 E-value=6.5e-10 Score=89.54 Aligned_cols=47 Identities=28% Similarity=0.779 Sum_probs=39.8
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCC---CcccccccccC
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN---TCPVCRANLVP 189 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~---tCP~CR~~l~~ 189 (334)
...|+||++.|.++.. ++ |||.||..||..|+..+. +||+||..+..
T Consensus 21 ~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEPVS---TK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSCCB---CT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCeEE---CC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 4689999999977644 45 999999999999997654 89999998864
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.87 E-value=1.1e-09 Score=94.02 Aligned_cols=48 Identities=29% Similarity=0.602 Sum_probs=40.8
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCC-CcccccccccCC
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN-TCPVCRANLVPQ 190 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~-tCP~CR~~l~~~ 190 (334)
...|+||++.|.++.. ++ |||.||..||..|+.... +||+||..+...
T Consensus 78 ~~~C~IC~~~~~~pv~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVT---TE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSEEE---CT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCCEE---cC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 4789999999976543 55 999999999999998665 899999998754
No 44
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.84 E-value=1.2e-09 Score=84.83 Aligned_cols=47 Identities=19% Similarity=0.153 Sum_probs=41.5
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
..+.|+||++.|.++.. ++ |||.|+..||..|+..+.+||+|+..+.
T Consensus 13 ~~~~CpI~~~~m~dPV~---~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDPVR---LP-SGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp TTTBCTTTCSBCSSEEE---CT-TSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred hheECcccCchhcCCeE---CC-CCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence 46899999999988744 45 9999999999999998889999998875
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.82 E-value=9.1e-10 Score=90.26 Aligned_cols=48 Identities=29% Similarity=0.635 Sum_probs=40.5
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCC-CcccccccccC
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN-TCPVCRANLVP 189 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~-tCP~CR~~l~~ 189 (334)
+...|+||++.+.++ ..++ |||.||..||..|+.... +||+||..+..
T Consensus 17 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 17 SKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 357899999999766 3455 999999999999997665 89999998864
No 46
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.82 E-value=1.8e-09 Score=86.67 Aligned_cols=48 Identities=19% Similarity=0.171 Sum_probs=42.1
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 189 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 189 (334)
..+.|+||++.|.++..+ + |||.|+..||..||..+.+||+|+.++..
T Consensus 28 ~~~~CpI~~~~m~dPV~~---~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 28 DEFRDPLMDTLMTDPVRL---P-SGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp TTTBCTTTCSBCSSEEEE---T-TTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred HhhCCcCccCcccCCeEC---C-CCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 467999999999887544 4 99999999999999988899999998863
No 47
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.81 E-value=6.2e-10 Score=90.59 Aligned_cols=47 Identities=21% Similarity=0.697 Sum_probs=39.5
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhc-CCCcccccccccC
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA-HNTCPVCRANLVP 189 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~ 189 (334)
...|+||++.|.++. .++ |||.||..||..|+.. ..+||+||..+..
T Consensus 15 ~~~C~iC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVEPV---TLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSSCE---ECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccCcee---EcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 468999999997653 345 9999999999999976 5689999999863
No 48
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.80 E-value=2.3e-09 Score=85.71 Aligned_cols=48 Identities=19% Similarity=0.168 Sum_probs=41.9
Q ss_pred CCCcCccccccccCCcceEEcCCCC-CccchhHHHHHHhcCCCcccccccccC
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCS-HVFHMDCIDAWLSAHNTCPVCRANLVP 189 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~-H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 189 (334)
..+.|+||++.|.++.. ++ || |.|+..||..||..+.+||+||.++..
T Consensus 21 ~~~~CpI~~~~m~dPV~---~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDPVV---LP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBCSSEEE---CT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred HhcCCcCccccccCCeE---CC-CCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 36789999999988754 45 99 999999999999988899999998863
No 49
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.80 E-value=1.6e-09 Score=88.19 Aligned_cols=47 Identities=32% Similarity=0.709 Sum_probs=39.9
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhc-CCCcccccccccC
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA-HNTCPVCRANLVP 189 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~ 189 (334)
...|+||++.|.++.. ++ |||.||..||..|+.. ..+||+||..+..
T Consensus 23 ~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILADPVE---TS-CKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCSSEEE---CT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhcCcEE---cC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 4689999999976533 55 9999999999999976 6789999999864
No 50
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.78 E-value=4.4e-09 Score=80.68 Aligned_cols=53 Identities=17% Similarity=0.469 Sum_probs=40.5
Q ss_pred CCCCcCccccccccCCcc-eEEcCCCCCccchhHHHHHHhc-CCCcccccccccCC
Q 039186 137 KGSLECAVCLNEFGDEET-LRLIPKCSHVFHMDCIDAWLSA-HNTCPVCRANLVPQ 190 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~~-~~~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~~ 190 (334)
+++..|+||++.+...+. +.-++ |||.||..|+..|+.. ...||+||+.+...
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred ccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 346789999999864432 22233 9999999999999853 45799999998754
No 51
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.76 E-value=2.8e-09 Score=78.46 Aligned_cols=48 Identities=19% Similarity=0.430 Sum_probs=39.0
Q ss_pred CCcCccccccccCCcceEEcCCCCCc-cchhHHHHHHhcCCCccccccccc
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHV-FHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
+.+|.||++.+.+.. +..+| |||. ||..|+..|+..+..||+||+++.
T Consensus 8 ~~~C~IC~~~~~~~~-~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 8 IEPCVICQGRPKNGC-IVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GSCCTTTSSSCSCEE-EEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred cCCCCcCCCCCCCEE-EECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 568999999865431 11347 9999 899999999988889999999874
No 52
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.75 E-value=2.5e-09 Score=90.82 Aligned_cols=48 Identities=21% Similarity=0.453 Sum_probs=40.5
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCC-CcccccccccC
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN-TCPVCRANLVP 189 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~-tCP~CR~~l~~ 189 (334)
+.+.|+||++.|.++. .++ |||.||..||..|+.... +||+||.++..
T Consensus 30 ~~~~C~IC~~~~~~pv---~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 30 AKYLCSACRNVLRRPF---QAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp GGGBCTTTCSBCSSEE---ECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred cCcCCCCCChhhcCcE---ECC-CCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 4678999999998773 355 999999999999998665 89999998753
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.75 E-value=2.8e-09 Score=76.22 Aligned_cols=47 Identities=30% Similarity=0.617 Sum_probs=38.8
Q ss_pred CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccCC
Q 039186 137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ 190 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 190 (334)
.+...|+||++.|.++. .+| |+|.||..||..| ...||+||+.+..+
T Consensus 4 ~~~~~C~IC~~~~~~p~---~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPK---LLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCCS---CST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCeE---EcC-CCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 45678999999998763 455 9999999999884 56899999998754
No 54
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.72 E-value=5.8e-09 Score=102.19 Aligned_cols=49 Identities=24% Similarity=0.762 Sum_probs=41.1
Q ss_pred CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHh-cCCCcccccccccC
Q 039186 137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLS-AHNTCPVCRANLVP 189 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l~~ 189 (334)
....+|+||++.+.+ ...+| |||.||..||..|+. .+.+||+||+.+..
T Consensus 330 ~~~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 330 STFQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp TSSSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 345799999999855 34566 999999999999998 67899999999864
No 55
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.71 E-value=2.8e-09 Score=102.40 Aligned_cols=54 Identities=26% Similarity=0.605 Sum_probs=41.4
Q ss_pred CCCCCcCccccccccCCc----ceEEcCCCCCccchhHHHHHHhcC-----------CCcccccccccC
Q 039186 136 GKGSLECAVCLNEFGDEE----TLRLIPKCSHVFHMDCIDAWLSAH-----------NTCPVCRANLVP 189 (334)
Q Consensus 136 ~~~~~~C~ICl~~~~~~~----~~~~lp~C~H~FH~~CI~~Wl~~~-----------~tCP~CR~~l~~ 189 (334)
.++..+|+||++.+.++. .....++|+|.||..||.+||.+. .+||.||+++..
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 346779999999998722 222334699999999999999642 369999998863
No 56
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.70 E-value=4.2e-09 Score=77.27 Aligned_cols=48 Identities=19% Similarity=0.462 Sum_probs=39.1
Q ss_pred CCcCccccccccCCcceEEcCCCCCc-cchhHHHHHHhcCCCccccccccc
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHV-FHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
...|.||++.+.+.. +..+| |||. ||..|+..|......||+||+++.
T Consensus 7 ~~~C~IC~~~~~~~~-~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDGN-IIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCEE-EEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCCCcccCCcCCCeE-EEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 468999999864432 22347 9998 999999999988889999999884
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.68 E-value=6.8e-09 Score=84.86 Aligned_cols=45 Identities=29% Similarity=0.702 Sum_probs=38.3
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
...|+||++.|.++.. +.+ |||.||..||..|+. ..||+||..+.
T Consensus 22 ~~~C~IC~~~~~~pv~--~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILREPVC--LGG-CEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSSCBC--CCS-SSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred CCCCCCCChHhhCccE--eCC-CCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 5789999999976632 225 999999999999998 78999999985
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.58 E-value=1.6e-08 Score=93.05 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=40.0
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhc-CCCccccccccc
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA-HNTCPVCRANLV 188 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~ 188 (334)
..+.|+||++.|.++.. +| |||.||..||..|+.. ..+||+||.++.
T Consensus 207 ~~~~c~i~~~~~~dPv~---~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 207 DYLCGKISFELMREPCI---TP-SGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp STTBCTTTCSBCSSEEE---CS-SCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred cccCCcCcCCHhcCCeE---CC-CCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 46789999999988744 45 9999999999999975 445999999885
No 59
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.57 E-value=2.8e-08 Score=78.04 Aligned_cols=48 Identities=27% Similarity=0.715 Sum_probs=40.6
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhc--------CCCccc--cccc
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA--------HNTCPV--CRAN 186 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~--------~~tCP~--CR~~ 186 (334)
+..+|+||++++..++.+.+.+ |+|.||.+||..|+.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4678999999998887777766 9999999999999853 137999 9987
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.57 E-value=1.8e-08 Score=79.47 Aligned_cols=46 Identities=20% Similarity=0.510 Sum_probs=37.8
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcC------CCccc--cccc
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH------NTCPV--CRAN 186 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~------~tCP~--CR~~ 186 (334)
..+.|+||++.|.++.. ++.|||.|+..||..||..+ .+||+ |+..
T Consensus 6 ~~~~CPI~~~~~~dPV~---~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVK---NKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSSEEE---ESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcCCEE---cCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 46789999999987643 33499999999999999754 48999 9866
No 61
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.56 E-value=7.9e-09 Score=78.00 Aligned_cols=43 Identities=23% Similarity=0.663 Sum_probs=36.0
Q ss_pred CCcCccccccccCCcceEEcCCCCCc-cchhHHHHHHhcCCCcccccccccC
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHV-FHMDCIDAWLSAHNTCPVCRANLVP 189 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~~ 189 (334)
...|+||++.+.+. ..+| |||. ||..|+..| ..||+||..+..
T Consensus 24 ~~~C~iC~~~~~~~---~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCCE---EEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCCE---EEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 46899999997553 4556 9999 999999999 789999998853
No 62
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.51 E-value=2.8e-08 Score=86.14 Aligned_cols=48 Identities=29% Similarity=0.636 Sum_probs=40.2
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCC-CcccccccccC
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN-TCPVCRANLVP 189 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~-tCP~CR~~l~~ 189 (334)
+.+.|+||++.|.++. .++ |||.||..||..|+.... +||+||..+..
T Consensus 17 ~~~~C~IC~~~~~~pv---~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 17 SKYECPICLMALREAV---QTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GGGBCTTTCSBCSSEE---ECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCChhhcCcE---ECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 3578999999998762 355 999999999999997644 89999998864
No 63
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.46 E-value=9.7e-08 Score=69.57 Aligned_cols=48 Identities=23% Similarity=0.678 Sum_probs=37.0
Q ss_pred CCCCcCccccccccCCcceEEcCCCC--C---ccchhHHHHHHhc--CCCccccccccc
Q 039186 137 KGSLECAVCLNEFGDEETLRLIPKCS--H---VFHMDCIDAWLSA--HNTCPVCRANLV 188 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~~~~~lp~C~--H---~FH~~CI~~Wl~~--~~tCP~CR~~l~ 188 (334)
++...|.||+++.. +.+ ++| |. | .||..|+.+|+.. +.+||+|++.+.
T Consensus 4 ~~~~~CrIC~~~~~--~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELG--NER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECS--CCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCC--Cce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 35678999999843 334 566 65 4 8999999999964 568999998874
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.43 E-value=6.6e-08 Score=85.38 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=40.3
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcC-CCcccccccccC
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH-NTCPVCRANLVP 189 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~-~tCP~CR~~l~~ 189 (334)
..+.|+||++.|.++.. +| |||.|+..||..|+..+ .+||+|+.++..
T Consensus 105 ~~f~CPI~~elm~DPV~---~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 105 DYLCGKISFELMREPCI---TP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp GGGBCTTTCSBCSSEEE---CT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred HhhcccCccccCCCCeE---CC-CCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 56889999999988644 45 99999999999999763 479999988753
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=2.6e-07 Score=68.76 Aligned_cols=44 Identities=32% Similarity=0.756 Sum_probs=36.2
Q ss_pred CCCcCccccccccCCcceEEcCCCCCc-cchhHHHHHHhcCCCcccccccccC
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHV-FHMDCIDAWLSAHNTCPVCRANLVP 189 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~~ 189 (334)
+...|.||++.+. .+.++| |+|. ||..|+.. ...||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~---~~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTV---NWVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCC---CCEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCCC---CEEEEC-CCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 4678999999853 356777 9999 99999985 4789999998864
No 66
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=2.2e-07 Score=70.03 Aligned_cols=43 Identities=23% Similarity=0.663 Sum_probs=34.9
Q ss_pred CCcCccccccccCCcceEEcCCCCCc-cchhHHHHHHhcCCCcccccccccC
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHV-FHMDCIDAWLSAHNTCPVCRANLVP 189 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~~ 189 (334)
...|+||++.+.+. ..+| |||. ||..|+..+ ..||+||.++..
T Consensus 25 ~~~C~IC~~~~~~~---~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCB---CCSS-SCCCCBCHHHHHHC----SBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCE---EEec-CCCHHHHHHHhhCC----CCCccCCceecC
Confidence 45899999997654 3456 9999 999999753 789999999864
No 67
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.31 E-value=2.4e-07 Score=67.59 Aligned_cols=48 Identities=17% Similarity=0.326 Sum_probs=40.3
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 189 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 189 (334)
.+.|+||++.|.++ + +++.|||+|...||.+|+..+.+||+++.++..
T Consensus 3 ~~~CpIs~~~m~dP--V-~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPRRP--V-LSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCSSE--E-EETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred eEEecCCCCCCCCC--E-EeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 36899999999876 3 443499999999999999888899999998863
No 68
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.26 E-value=2.5e-07 Score=70.76 Aligned_cols=43 Identities=30% Similarity=0.734 Sum_probs=35.5
Q ss_pred CCcCccccccccCCcceEEcCCCCCc-cchhHHHHHHhcCCCcccccccccC
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHV-FHMDCIDAWLSAHNTCPVCRANLVP 189 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~~ 189 (334)
...|.||++.+.+ ...+| |||. ||..|+..| ..||+||..+..
T Consensus 18 ~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 4589999998644 45667 9999 999999987 489999998864
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.24 E-value=4.2e-07 Score=84.54 Aligned_cols=48 Identities=27% Similarity=0.560 Sum_probs=39.5
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcC--CCccc--cccccc
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH--NTCPV--CRANLV 188 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~--~tCP~--CR~~l~ 188 (334)
....|+||++.|.++.. .. .|||.||..||..|+..+ .+||+ |+..+.
T Consensus 180 ~el~CPIcl~~f~DPVt--s~-~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 180 IELTCPITCKPYEAPLI--SR-KCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CCSBCTTTSSBCSSEEE--ES-SSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred eeeECcCccCcccCCee--eC-CCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 45679999999987743 34 499999999999999754 37999 999775
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.04 E-value=8.9e-07 Score=85.61 Aligned_cols=43 Identities=28% Similarity=0.779 Sum_probs=36.3
Q ss_pred CCCcCccccccccCCcceEEcCCCCCc-cchhHHHHHHhcCCCccccccccc
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHV-FHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
+...|+||++.+.++ ..+| |||. ||..|+..| ..||+||..+.
T Consensus 294 ~~~~C~IC~~~~~~~---v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEVSV---VFIP-CGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBCCE---EEET-TCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred CCCCCCccCCcCCce---EEcC-CCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 457899999998553 4456 9999 999999998 78999999885
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.96 E-value=4.8e-06 Score=66.36 Aligned_cols=45 Identities=31% Similarity=0.615 Sum_probs=37.3
Q ss_pred cCccccccccCCcceEEcCCCCCccchhHHHHHHh-cCCCccccccccc
Q 039186 141 ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLS-AHNTCPVCRANLV 188 (334)
Q Consensus 141 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l~ 188 (334)
.|.+|--.+ ..-.|++| |+|+||.+|+..|.+ ..++||.|+.++.
T Consensus 3 fC~~C~~Pi--~iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPI--KVYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBC--SEEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCe--EEEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 478887776 44578898 999999999999984 5678999999885
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.88 E-value=1.2e-05 Score=73.80 Aligned_cols=50 Identities=16% Similarity=0.536 Sum_probs=41.3
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCC--CcccccccccCC
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN--TCPVCRANLVPQ 190 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~--tCP~CR~~l~~~ 190 (334)
...+|+||.+.+..+..+ +.|+|.||..|+..|++.+. .||.|+..+...
T Consensus 179 ~i~~C~iC~~iv~~g~~C---~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSCEEC---SSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCCccc---CccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 467899999999876443 35999999999999997655 899999987644
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.96 E-value=0.016 Score=42.52 Aligned_cols=48 Identities=23% Similarity=0.568 Sum_probs=34.8
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCC----CcccccccccC
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN----TCPVCRANLVP 189 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----tCP~CR~~l~~ 189 (334)
....|.||.+. ++.+ .--.|...||..|++..|.... .||.|.+...+
T Consensus 11 ~~~~C~vC~~~---~~ll-~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p 62 (66)
T 2lri_C 11 PGARCGVCGDG---TDVL-RCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTP 62 (66)
T ss_dssp TTCCCTTTSCC---TTCE-ECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCC
T ss_pred CCCCcCCCCCC---CeEE-ECCCCCCceecccCCCccCcCCCCCEECccccCCCcc
Confidence 35679999853 4444 4446999999999998886433 69999766543
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.67 E-value=0.048 Score=42.80 Aligned_cols=49 Identities=29% Similarity=0.559 Sum_probs=38.8
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccCCC
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQP 191 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~ 191 (334)
+-..|..|+-+.+ .+.. -..|.+|..|+...|.....||+|+.+|..+-
T Consensus 27 G~~nCKsCWf~~k---~LV~--C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 27 GPQFCKSCWFENK---GLVE--CNNHYLCLNCLTLLLSVSNRCPICKMPLPTKL 75 (99)
T ss_dssp CCCCCCSSCSCCS---SEEE--CSSCEEEHHHHHHTCSSSSEETTTTEECCCCS
T ss_pred CcccChhhccccC---Ceee--ecchhhHHHHHHHHHhhccCCcccCCcCCcce
Confidence 5678999998753 3322 24699999999999999999999999997543
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.87 E-value=0.035 Score=43.22 Aligned_cols=34 Identities=15% Similarity=0.462 Sum_probs=26.6
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHH
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAW 173 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~W 173 (334)
+..|.||++.+..+....-+. |+|.||..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 468999998754444554565 9999999999984
No 76
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=85.68 E-value=0.57 Score=33.42 Aligned_cols=46 Identities=28% Similarity=0.661 Sum_probs=32.2
Q ss_pred CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcC----CCccccccc
Q 039186 137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH----NTCPVCRAN 186 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~----~tCP~CR~~ 186 (334)
..+..|.||... ++ +..-..|.-.||..|+..-+... -.||.|...
T Consensus 9 ~~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GE-IILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC---SS-EEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC---Cc-EEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 346789999873 43 43444688999999999865322 269999653
No 77
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=84.17 E-value=0.3 Score=42.28 Aligned_cols=45 Identities=38% Similarity=0.653 Sum_probs=32.6
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcC----CCccccccc
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH----NTCPVCRAN 186 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~----~tCP~CR~~ 186 (334)
++..|.||... ++ +.....|.-.||..|+.+-+... -.||.|+..
T Consensus 3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCc
Confidence 45679999854 44 43445699999999998876532 269999754
No 78
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=83.30 E-value=0.53 Score=33.60 Aligned_cols=50 Identities=22% Similarity=0.513 Sum_probs=34.4
Q ss_pred CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHh-----cCCCccccccc
Q 039186 137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLS-----AHNTCPVCRAN 186 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-----~~~tCP~CR~~ 186 (334)
.+...|+||...+.++.....--.|..=||..|+..-.. ..-.||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 356789999998865444444445888899999865432 23469999653
No 79
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=83.12 E-value=0.34 Score=42.86 Aligned_cols=46 Identities=35% Similarity=0.629 Sum_probs=33.4
Q ss_pred CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCC----Cccccccc
Q 039186 137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN----TCPVCRAN 186 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----tCP~CR~~ 186 (334)
..+..|.+|... ++ +.....|...||..|+.+-+.... .||.|+..
T Consensus 5 ~~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 5 PNEDWCAVCQNG---GD-LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SSCSSBTTTCCC---EE-EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCC---Cc-eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 346789999854 33 445556999999999988765332 69999754
No 80
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=79.53 E-value=0.96 Score=30.71 Aligned_cols=44 Identities=30% Similarity=0.741 Sum_probs=29.3
Q ss_pred cCccccccccCCcceEEcCCCCCccchhHHHHHHhcC----CCcccccc
Q 039186 141 ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH----NTCPVCRA 185 (334)
Q Consensus 141 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~----~tCP~CR~ 185 (334)
.|.||...-..++.+ .-..|...||..|+.+=+... -.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll-~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLI-LCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCE-ECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEE-ECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488998764334344 444699999999997644322 25999854
No 81
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=78.61 E-value=3 Score=31.73 Aligned_cols=39 Identities=28% Similarity=0.553 Sum_probs=29.2
Q ss_pred CCCCcCccccccccCCcceEEcC-CCCCccchhHHHHHHhc
Q 039186 137 KGSLECAVCLNEFGDEETLRLIP-KCSHVFHMDCIDAWLSA 176 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~~~~~lp-~C~H~FH~~CI~~Wl~~ 176 (334)
...+.|.+|.+.+++..-+ +.| .=.|.||..|-...++.
T Consensus 13 ~a~l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCcee-eCCCccCCeeeccccHHHHHh
Confidence 3467899999999876555 333 23589999999998853
No 82
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=77.73 E-value=11 Score=29.22 Aligned_cols=53 Identities=15% Similarity=0.431 Sum_probs=36.8
Q ss_pred CCCcCcccccccc---CCcceEEcCCCCCccchhHHHHHH-hcCCCcccccccccCC
Q 039186 138 GSLECAVCLNEFG---DEETLRLIPKCSHVFHMDCIDAWL-SAHNTCPVCRANLVPQ 190 (334)
Q Consensus 138 ~~~~C~ICl~~~~---~~~~~~~lp~C~H~FH~~CI~~Wl-~~~~tCP~CR~~l~~~ 190 (334)
+...|.||-+++. +++.....-.|+--.|..|.+-=. ..++.||-|++.+...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~ 71 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRL 71 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccc
Confidence 3468999999974 333333333477778999987654 4667899999988643
No 83
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=77.66 E-value=0.73 Score=33.96 Aligned_cols=50 Identities=16% Similarity=0.391 Sum_probs=34.6
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhc----CCCccccccccc
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA----HNTCPVCRANLV 188 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~----~~tCP~CR~~l~ 188 (334)
+...|.||..... +..+..--.|.--||..|+..-+.. .-.||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 3456999988753 3334444468889999999865532 336999987764
No 84
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=77.58 E-value=0.66 Score=33.08 Aligned_cols=46 Identities=26% Similarity=0.582 Sum_probs=31.3
Q ss_pred CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcC----CCccccccc
Q 039186 137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH----NTCPVCRAN 186 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~----~tCP~CR~~ 186 (334)
.....|.||.+. ++.+ .--.|...||..|+.+-|... -.||.|...
T Consensus 7 ~~~~~C~vC~~~---g~ll-~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELL-CCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCC---SSCB-CCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCC---CCEE-EcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 346679999863 3333 334588899999998655432 259999654
No 85
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=76.18 E-value=1.2 Score=38.82 Aligned_cols=47 Identities=26% Similarity=0.517 Sum_probs=33.3
Q ss_pred CcCccccccccCCcc---eEEcCCCCCccchhHHHHH------Hh-----cCCCccccccc
Q 039186 140 LECAVCLNEFGDEET---LRLIPKCSHVFHMDCIDAW------LS-----AHNTCPVCRAN 186 (334)
Q Consensus 140 ~~C~ICl~~~~~~~~---~~~lp~C~H~FH~~CI~~W------l~-----~~~tCP~CR~~ 186 (334)
..|+||...+.+++. ....-.|..=||..|+..= +. ..-.||.|+..
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 469999999987762 4444468899999997431 11 14689999765
No 86
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=75.23 E-value=1.3 Score=32.59 Aligned_cols=50 Identities=14% Similarity=0.428 Sum_probs=33.9
Q ss_pred CCCCcCccccccc-cCCcceEEcCCCCCccchhHHHHHHhc--CCCccccccc
Q 039186 137 KGSLECAVCLNEF-GDEETLRLIPKCSHVFHMDCIDAWLSA--HNTCPVCRAN 186 (334)
Q Consensus 137 ~~~~~C~ICl~~~-~~~~~~~~lp~C~H~FH~~CI~~Wl~~--~~tCP~CR~~ 186 (334)
.....|.||...- .+++.+..--.|.-.||..|+..-..- .=.||.|+..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 3467899998763 334455555679999999999864321 2259998654
No 87
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=75.19 E-value=1.1 Score=35.47 Aligned_cols=47 Identities=23% Similarity=0.568 Sum_probs=31.7
Q ss_pred CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhc----CCCccccc
Q 039186 137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA----HNTCPVCR 184 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~----~~tCP~CR 184 (334)
.++..|.||.+.-+..+.+ .-..|+..||..|+...+.. .-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll-~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQF-FCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSE-ECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCe-ECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 4567899998874332234 33469999999999887642 12477664
No 88
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=75.07 E-value=1.5 Score=47.34 Aligned_cols=48 Identities=21% Similarity=0.191 Sum_probs=40.7
Q ss_pred CCCCcCccccccccCCcceEEcCCCC-CccchhHHHHHHhcCCCccccccccc
Q 039186 137 KGSLECAVCLNEFGDEETLRLIPKCS-HVFHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~~~~~lp~C~-H~FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
.+.+.|+|-++.|.++.. +| .| +.|-..+|.+||..+.+||+=|.++.
T Consensus 889 P~~F~cPIs~~lM~DPVi---lp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~ 937 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDPVI---LP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLK 937 (968)
T ss_dssp CGGGBCTTTCSBCSSEEE---CT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred cHHhCCcchhhHHhCCeE---cC-CCCEEECHHHHHHHHhcCCCCCCCCCCCC
Confidence 356789999999988754 45 76 58999999999998999999998886
No 89
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=74.65 E-value=1.9 Score=41.76 Aligned_cols=45 Identities=24% Similarity=0.552 Sum_probs=29.4
Q ss_pred CcCccccccccCCcceEEcCCCCCccchhHHHHHH---hcC--CCccccccccc
Q 039186 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWL---SAH--NTCPVCRANLV 188 (334)
Q Consensus 140 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl---~~~--~tCP~CR~~l~ 188 (334)
+.|++-...|..+ +|-.. |.|.-|++- ..|| ... -.||+|...+.
T Consensus 250 L~CPlS~~ri~~P--vRg~~-C~HlQCFDl-~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 250 LQCPISYTRMKYP--SKSIN-CKHLQCFDA-LWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp SBCTTTSSBCSSE--EEETT-CCSSCCEEH-HHHHHHHHHSCCCBCTTTCCBCC
T ss_pred ecCCCcccccccc--CcCCc-CCCcceECH-HHHHHHhhcCCceeCCCCCcccC
Confidence 5699888887555 56664 999844432 3344 222 36999988764
No 90
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=74.53 E-value=0.55 Score=33.22 Aligned_cols=47 Identities=32% Similarity=0.751 Sum_probs=32.9
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcC----CCccccccccc
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH----NTCPVCRANLV 188 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~----~tCP~CR~~l~ 188 (334)
.+..|.||... ++.+ .-..|.-.||..|+.+=+... -.||.|.....
T Consensus 4 ~~~~C~vC~~~---g~ll-~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLL-MCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCSSCTTTCCC---SSCE-ECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCcCCCCC---CcEE-EcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 45689999874 4444 444699999999998655332 25999976554
No 91
>1nla_A Transcriptional repressor ARC; 3(10) helix, beta-ribbon, beta-sheet, structural switching; NMR {Enterobacteria phage P22} SCOP: a.43.1.1
Probab=74.28 E-value=1.5 Score=31.79 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=16.5
Q ss_pred ccccccccCcHHHHHHHHh
Q 039186 275 DCERFTLRLPAEVRSQLMN 293 (334)
Q Consensus 275 ~~er~tlrlpe~v~~~~~~ 293 (334)
+..+|+||||++++++|-.
T Consensus 6 ~~~~f~lRlp~eLh~~l~~ 24 (64)
T 1nla_A 6 KMPQFLNRWPREVLDLVRK 24 (64)
T ss_dssp CCCGGGGSSCHHHHHHHHH
T ss_pred cCCceEeeCCHHHHHHHHH
Confidence 5689999999999988773
No 92
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=74.11 E-value=1.3 Score=33.95 Aligned_cols=51 Identities=14% Similarity=0.403 Sum_probs=34.7
Q ss_pred CCCcCccccccc-cCCcceEEcCCCCCccchhHHHHHHhc--CCCccccccccc
Q 039186 138 GSLECAVCLNEF-GDEETLRLIPKCSHVFHMDCIDAWLSA--HNTCPVCRANLV 188 (334)
Q Consensus 138 ~~~~C~ICl~~~-~~~~~~~~lp~C~H~FH~~CI~~Wl~~--~~tCP~CR~~l~ 188 (334)
++..|.||...- .+++.+.....|.-.||..|+..-+.. .-.||.|.....
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 467899999763 233455555578889999999864322 226999976543
No 93
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=73.93 E-value=1 Score=35.16 Aligned_cols=45 Identities=24% Similarity=0.475 Sum_probs=30.4
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhc---CCCccccc
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA---HNTCPVCR 184 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~---~~tCP~CR 184 (334)
+...| ||-.....+..+ ..-.|.--||..|+..=+.. .-.||.|+
T Consensus 27 d~vrC-iC~~~~~~~~mi-~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~ 74 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMI-CCDKCSVWQHIDCMGIDRQHIPDTYLCERCQ 74 (98)
T ss_dssp CBCCC-TTSCCSCSSCEE-EBTTTCBEEETTTTTCCTTSCCSSBCCTTTS
T ss_pred CCEEe-ECCCccCCCcEE-EcCCCCCcCcCcCCCCCccCCCCCEECCCCc
Confidence 34568 898776655544 44469999999998753322 23699996
No 94
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.83 E-value=0.55 Score=32.80 Aligned_cols=44 Identities=34% Similarity=0.782 Sum_probs=30.4
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCC----Ccccccc
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN----TCPVCRA 185 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----tCP~CR~ 185 (334)
.+..|.||... ++.+ .-..|...||..|+.+-|.... .||.|..
T Consensus 8 ~~~~C~vC~~~---g~ll-~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS---GQLL-MCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS---SCCE-ECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCC---CeEE-EcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 45689999974 4444 4446899999999986553322 5888853
No 95
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=73.36 E-value=2.6 Score=32.36 Aligned_cols=34 Identities=26% Similarity=0.500 Sum_probs=22.8
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHH
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAW 173 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~W 173 (334)
.+..|.||-.- ..++... ...|+-+||..|+.+-
T Consensus 14 ~D~~C~VC~~~-t~~~l~p-CRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEVW-TAESLFP-CRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCCC-CSSCCSS-CSSSSSCCCHHHHHHH
T ss_pred CCcccCccccc-cccceec-cccccccccHhhcccc
Confidence 46789999732 2233221 1148999999999996
No 96
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Probab=73.27 E-value=1.3 Score=30.62 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=16.1
Q ss_pred ccccccccCcHHHHHHHHh
Q 039186 275 DCERFTLRLPAEVRSQLMN 293 (334)
Q Consensus 275 ~~er~tlrlpe~v~~~~~~ 293 (334)
...+||||||+++++++-.
T Consensus 6 ~~~~~~lRlp~eL~~~l~~ 24 (53)
T 1baz_A 6 KMPQVNLRWPREVLDLVRK 24 (53)
T ss_dssp CSCEEEEECCHHHHHHHHH
T ss_pred cCCeeEEECCHHHHHHHHH
Confidence 4578999999999988773
No 97
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=72.90 E-value=1.1 Score=35.72 Aligned_cols=45 Identities=27% Similarity=0.702 Sum_probs=30.3
Q ss_pred cCccccccccCCcceEEcCCCCCccchhHHHHHHhcC----CCcccccc
Q 039186 141 ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH----NTCPVCRA 185 (334)
Q Consensus 141 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~----~tCP~CR~ 185 (334)
.|.||...-.+++.+..--.|...||..|+++-|..- =.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 5788886533334444555699999999998755432 26999864
No 98
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=72.63 E-value=9.9 Score=25.49 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039186 58 NGTMAIVTVILVSVFFILGFFSVYIRQC 85 (334)
Q Consensus 58 ~~~~~iil~ilv~~l~ll~~~~i~~r~c 85 (334)
....+++++ ++.++++.+.+.+|+|+.
T Consensus 12 ~~Ia~~vVG-vll~vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 12 TSIISAVVG-ILLVVVLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHH-HHHHHHHHHHHHhheehh
Confidence 334445555 333444444444555443
No 99
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=72.43 E-value=1.8 Score=33.37 Aligned_cols=46 Identities=24% Similarity=0.629 Sum_probs=32.5
Q ss_pred CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCC----Cccccccc
Q 039186 137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN----TCPVCRAN 186 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----tCP~CR~~ 186 (334)
.....|.+|... ++.+ ....|.-.||..|+.+=|.... .||.|...
T Consensus 23 ~n~~~C~vC~~~---g~LL-~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP---GDLV-MCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS---SCCE-ECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC---CCEE-ECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 346789999975 4444 4446888999999987664322 69999654
No 100
>3qoq_A Alginate and motility regulator Z; protein-DNA complex, ribbon-helix-helix; HET: DNA; 3.10A {Pseudomonas aeruginosa}
Probab=71.08 E-value=1.1 Score=33.14 Aligned_cols=20 Identities=30% Similarity=0.732 Sum_probs=17.1
Q ss_pred CccccccccCcHHHHHHHHh
Q 039186 274 QDCERFTLRLPAEVRSQLMN 293 (334)
Q Consensus 274 ~~~er~tlrlpe~v~~~~~~ 293 (334)
...++|+||||++++++|-.
T Consensus 17 r~~~kf~LRlP~eL~~~L~~ 36 (69)
T 3qoq_A 17 RTADKFVVRLPEGMREQIAE 36 (69)
T ss_dssp TTSEEEEEECCTTHHHHHHH
T ss_pred ccCCceEEECCHHHHHHHHH
Confidence 45699999999999988773
No 101
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=70.91 E-value=1.5 Score=31.64 Aligned_cols=45 Identities=29% Similarity=0.641 Sum_probs=31.6
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCC----Cccccccc
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN----TCPVCRAN 186 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----tCP~CR~~ 186 (334)
.+..|.||.+. ++.+ .-..|.-.||..|+.+-|.... .||.|...
T Consensus 7 ~~~~C~vC~~~---g~ll-~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG---GELI-CCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC---SSCE-ECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC---CCEE-EcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 46789999964 4434 4446889999999986553322 59999653
No 102
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=70.85 E-value=4.9 Score=29.37 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 039186 62 AIVTVILVSVFFILGFFSVYIRQCTERGR 90 (334)
Q Consensus 62 ~iil~ilv~~l~ll~~~~i~~r~c~~~~~ 90 (334)
.|+++.++.+++++++.+++.-+|.++++
T Consensus 11 LivlGg~~~lll~~glcI~ccvkcrhRrr 39 (70)
T 2klu_A 11 LIVLGGVAGLLLFIGLGIFFSVRSRHRRR 39 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCSS
T ss_pred HHHHhHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 37888888888888887774444544443
No 103
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=70.28 E-value=4.1 Score=34.10 Aligned_cols=46 Identities=20% Similarity=0.414 Sum_probs=32.8
Q ss_pred CCCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHh-----------cCCCcccccc
Q 039186 136 GKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLS-----------AHNTCPVCRA 185 (334)
Q Consensus 136 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-----------~~~tCP~CR~ 185 (334)
+..+..|.||.+- ++.+ ..-.|.-+||..||.+=+. ..-.||+|+.
T Consensus 60 Dg~~d~C~vC~~G---G~Ll-cCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GNLI-CCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCC---SSEE-ECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCC---CcEE-eCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 3457889999975 5444 4446999999999997653 1126999963
No 104
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=68.50 E-value=1.2 Score=38.82 Aligned_cols=44 Identities=25% Similarity=0.630 Sum_probs=30.4
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcC----CCccccccc
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH----NTCPVCRAN 186 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~----~tCP~CR~~ 186 (334)
+..|.+|... ++.+ ....|.-.||..|+.+=+... -.||.|+..
T Consensus 2 ~~~C~~C~~~---g~ll-~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GDLV-MCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SSCC-CCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---Ccee-ECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4579999965 4433 334588899999997655322 269999755
No 105
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=66.30 E-value=5.6 Score=29.47 Aligned_cols=49 Identities=20% Similarity=0.451 Sum_probs=32.2
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHh-----cCCCcccccccc
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLS-----AHNTCPVCRANL 187 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-----~~~tCP~CR~~l 187 (334)
....| ||...+.+.......-.|..=||..|+..--. ..-.||.|+...
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 45567 99988754443334445888899999853221 334799997654
No 106
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=65.53 E-value=1.8 Score=36.79 Aligned_cols=48 Identities=19% Similarity=0.520 Sum_probs=32.6
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHH-----hcCCCccccccc
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWL-----SAHNTCPVCRAN 186 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl-----~~~~tCP~CR~~ 186 (334)
+...| +|.....++......-.|.--||..|+..-. ...-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 45679 9998875444444444688899999985321 123479999764
No 107
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=63.89 E-value=2.6 Score=32.17 Aligned_cols=50 Identities=22% Similarity=0.502 Sum_probs=35.3
Q ss_pred CCcCccccccccC-CcceEEcCCCCCccchhHHHHHHhc--------CCCccccccccc
Q 039186 139 SLECAVCLNEFGD-EETLRLIPKCSHVFHMDCIDAWLSA--------HNTCPVCRANLV 188 (334)
Q Consensus 139 ~~~C~ICl~~~~~-~~~~~~lp~C~H~FH~~CI~~Wl~~--------~~tCP~CR~~l~ 188 (334)
...|.||...-.. +..+...-.|...||..|+.+-|.. .-.|+.|+....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 4679999976432 2455555679999999999876541 226999976654
No 108
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=63.86 E-value=2.1 Score=31.55 Aligned_cols=49 Identities=22% Similarity=0.518 Sum_probs=32.4
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHH---------hcCCCccccccccc
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWL---------SAHNTCPVCRANLV 188 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl---------~~~~tCP~CR~~l~ 188 (334)
....| ||.........+. --.|..=||..|+..-. ...-.||.|+..-.
T Consensus 15 ~~~~C-~C~~~~~~~~MI~-Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 15 NALYC-ICRQPHNNRFMIC-CDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp TCCCS-TTCCCCCSSCEEE-CSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CCCEE-ECCCccCCCCEEE-eCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 34567 8998876444443 33588889999985321 23557999976544
No 109
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.66 E-value=0.98 Score=34.94 Aligned_cols=49 Identities=27% Similarity=0.508 Sum_probs=33.2
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCC----Ccccccccc
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN----TCPVCRANL 187 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----tCP~CR~~l 187 (334)
+...|.||...-..+ .+...-.|...||..|+.+=|.... .||.|...-
T Consensus 15 ~~~~C~vC~~~~~~~-~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~ 67 (92)
T 2e6r_A 15 DSYICQVCSRGDEDD-KLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAE 67 (92)
T ss_dssp CCCCCSSSCCSGGGG-GCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHHH
T ss_pred CCCCCccCCCcCCCC-CEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCcc
Confidence 356799999874333 3444456999999999985443222 599997643
No 110
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=62.17 E-value=4.6 Score=28.65 Aligned_cols=50 Identities=20% Similarity=0.501 Sum_probs=34.4
Q ss_pred CCCCcCcccccccc-CCcceEEcCCCCCccchhHHHHHHh-------cCCCccccccc
Q 039186 137 KGSLECAVCLNEFG-DEETLRLIPKCSHVFHMDCIDAWLS-------AHNTCPVCRAN 186 (334)
Q Consensus 137 ~~~~~C~ICl~~~~-~~~~~~~lp~C~H~FH~~CI~~Wl~-------~~~tCP~CR~~ 186 (334)
.+...|.||..... ++..+..-..|.-.||..|+.+=+. ..-.||.|...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 34678999998653 3345555567999999999886442 12269999654
No 111
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=61.44 E-value=6.7 Score=28.22 Aligned_cols=35 Identities=29% Similarity=0.625 Sum_probs=25.7
Q ss_pred CCCcCccccccccCCcceEEcC-CCCCccchhHHHH
Q 039186 138 GSLECAVCLNEFGDEETLRLIP-KCSHVFHMDCIDA 172 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp-~C~H~FH~~CI~~ 172 (334)
....|.+|...+.++.....-- .|.--||..|+.-
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvgl 42 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGM 42 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTC
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccCC
Confidence 3457999999987766555554 6888899999743
No 112
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=60.74 E-value=1.8 Score=32.50 Aligned_cols=44 Identities=30% Similarity=0.677 Sum_probs=27.4
Q ss_pred cCccccccccCCcceEEcCCCCCccchhHHHHHHhcC-----CCcccccc
Q 039186 141 ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH-----NTCPVCRA 185 (334)
Q Consensus 141 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~-----~tCP~CR~ 185 (334)
.|.||...-. +..+..--.|...||..|+.+-|... =.||.|+.
T Consensus 28 ~C~vC~~~~d-~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCC-CcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 3555554432 23444445688999999999765421 26888875
No 113
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=59.53 E-value=10 Score=31.18 Aligned_cols=45 Identities=22% Similarity=0.428 Sum_probs=31.3
Q ss_pred CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHH------hc-----CCCcccccc
Q 039186 137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWL------SA-----HNTCPVCRA 185 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl------~~-----~~tCP~CR~ 185 (334)
..+..|.||-+- ++ +..--.|...||..||.+-+ .. .=.|++|+.
T Consensus 55 g~~~~C~vC~dG---G~-LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCC---SE-EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCC---Ce-eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 456789999975 43 43445689999999999752 11 126999954
No 114
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=57.53 E-value=7.5 Score=29.03 Aligned_cols=38 Identities=21% Similarity=0.457 Sum_probs=26.8
Q ss_pred CCCCCcCccccccccCCcceEEcCCCCCccchhHHHHH
Q 039186 136 GKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAW 173 (334)
Q Consensus 136 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~W 173 (334)
+.+...|.+|...|.--..-..-..||.+||..|....
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred CccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 34456899999999754322233469999999997653
No 115
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=57.49 E-value=7.8 Score=29.08 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=26.2
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHH
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAW 173 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~W 173 (334)
+...|.+|...|.--..-..-..||.+||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 456899999999754322233469999999997654
No 116
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=57.08 E-value=2.1 Score=34.86 Aligned_cols=50 Identities=18% Similarity=0.404 Sum_probs=33.2
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
...|..|-..|.--..-.....||.+||..|..........|-.|...+.
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~~ 68 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFRA 68 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHHh
Confidence 45899999999654332334469999999997766555667988865543
No 117
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=56.26 E-value=15 Score=24.53 Aligned_cols=8 Identities=13% Similarity=0.247 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 039186 76 GFFSVYIR 83 (334)
Q Consensus 76 ~~~~i~~r 83 (334)
+.+.+|+|
T Consensus 29 ~~~~~~~R 36 (44)
T 2ks1_B 29 LGIGLFMR 36 (44)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 33334444
No 118
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=55.87 E-value=23 Score=23.63 Aligned_cols=8 Identities=50% Similarity=0.854 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 039186 76 GFFSVYIR 83 (334)
Q Consensus 76 ~~~~i~~r 83 (334)
+.+.+|.|
T Consensus 28 ~~~~~~~R 35 (44)
T 2l2t_A 28 LTFAVYVR 35 (44)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 33334443
No 119
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=55.50 E-value=9 Score=29.14 Aligned_cols=52 Identities=17% Similarity=0.319 Sum_probs=34.7
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHH-------hcCCCcccccccccC
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWL-------SAHNTCPVCRANLVP 189 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl-------~~~~tCP~CR~~l~~ 189 (334)
....|.+|...|.--..--....||.+||..|....+ .....|-.|...+..
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~ 66 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTR 66 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHH
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHh
Confidence 3458999999997544333334699999999976542 112358888666653
No 120
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=55.49 E-value=6.1 Score=32.11 Aligned_cols=34 Identities=18% Similarity=0.467 Sum_probs=24.7
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHH
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDA 172 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~ 172 (334)
...|.+|...|.--..-.....||++||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 4579999999975432223346999999999554
No 121
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=55.24 E-value=2.8 Score=30.61 Aligned_cols=44 Identities=30% Similarity=0.695 Sum_probs=27.5
Q ss_pred cCccccccccCCcceEEcCCCCCccchhHHHHHHhc-----CCCcccccc
Q 039186 141 ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA-----HNTCPVCRA 185 (334)
Q Consensus 141 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-----~~tCP~CR~ 185 (334)
.|.||...-. +..+..--.|...||..|+.+=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCC-CCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 4556665422 3344455568899999999864432 225888864
No 122
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.05 E-value=3 Score=31.19 Aligned_cols=44 Identities=25% Similarity=0.637 Sum_probs=29.0
Q ss_pred cCccccccccCCcceEEcCCCCCccchhHHHHHHhc-----CCCcccccc
Q 039186 141 ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA-----HNTCPVCRA 185 (334)
Q Consensus 141 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-----~~tCP~CR~ 185 (334)
.|.||...-. +..+..--.|...||..|+.+=|.. .=.||.|..
T Consensus 28 ~C~vC~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHE-PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCC-STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCC-CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 6788886432 3344455569999999999864432 225888864
No 123
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=54.98 E-value=7.3 Score=30.07 Aligned_cols=45 Identities=27% Similarity=0.582 Sum_probs=27.8
Q ss_pred CCCcCccccccccCCcceEEcCC--CC-CccchhHHHHHHhc----CCCcccccccc
Q 039186 138 GSLECAVCLNEFGDEETLRLIPK--CS-HVFHMDCIDAWLSA----HNTCPVCRANL 187 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~--C~-H~FH~~CI~~Wl~~----~~tCP~CR~~l 187 (334)
+...| ||..... +..+ ..-. |. .-||..|+. |.. +-.||.|+..-
T Consensus 35 e~~yC-iC~~~~~-g~MI-~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMI-GCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCC-SCCC-CCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCC-CCEe-EecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 45567 9988653 3333 2223 44 469999997 332 23699997654
No 124
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=54.74 E-value=6.7 Score=29.94 Aligned_cols=50 Identities=20% Similarity=0.404 Sum_probs=32.9
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHh------cCCCccccccccc
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLS------AHNTCPVCRANLV 188 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~------~~~tCP~CR~~l~ 188 (334)
...|.+|...|.--..-.....||++||..|...+.. ....|-.|-..|.
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 75 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETIS 75 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHH
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHH
Confidence 4579999999975433233446999999999776531 1225777755543
No 125
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=54.69 E-value=7.4 Score=27.67 Aligned_cols=43 Identities=28% Similarity=0.596 Sum_probs=30.4
Q ss_pred CcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccc
Q 039186 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVC 183 (334)
Q Consensus 140 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~C 183 (334)
..|-.|...|.+.. ...-++|++.||.+|=.=--..=.+||-|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccchhHHHHhhccCCcCC
Confidence 46999999995433 34567899999999933222444579988
No 126
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=54.41 E-value=5.5 Score=27.14 Aligned_cols=44 Identities=18% Similarity=0.363 Sum_probs=28.8
Q ss_pred cCccccccccCCcceEEcC-CCCCccchhHHHHHH----hcCCCccccc
Q 039186 141 ECAVCLNEFGDEETLRLIP-KCSHVFHMDCIDAWL----SAHNTCPVCR 184 (334)
Q Consensus 141 ~C~ICl~~~~~~~~~~~lp-~C~H~FH~~CI~~Wl----~~~~tCP~CR 184 (334)
.|.+|...+.++.....-- .|.-=||..|+..-. ..+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4788988886555444444 477779999975422 2445799885
No 127
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.96 E-value=8.9 Score=28.73 Aligned_cols=35 Identities=20% Similarity=0.413 Sum_probs=24.3
Q ss_pred CCCCcCccccccccCCcceEEcCCCCCccchhHHH
Q 039186 137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCID 171 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~ 171 (334)
.+...|.+|...|.--..--.-..||.+||..|..
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 34568999999996443222333699999998843
No 128
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=53.70 E-value=6.1 Score=29.26 Aligned_cols=50 Identities=22% Similarity=0.462 Sum_probs=31.8
Q ss_pred CCCcCccccccccCCcceEEc-CCCCCccchhHHHHHHh---------cCCCccccccccc
Q 039186 138 GSLECAVCLNEFGDEETLRLI-PKCSHVFHMDCIDAWLS---------AHNTCPVCRANLV 188 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~l-p~C~H~FH~~CI~~Wl~---------~~~tCP~CR~~l~ 188 (334)
....| ||-.....+..+.-- +.|..=||..|+.---. .+..||.|+..-.
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~ 74 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSG 74 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCS
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccC
Confidence 45678 899885555444322 14888899999864221 2447999976543
No 129
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=53.04 E-value=3.4 Score=30.10 Aligned_cols=49 Identities=20% Similarity=0.318 Sum_probs=32.0
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHH----hcCCCcccccccc
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWL----SAHNTCPVCRANL 187 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl----~~~~tCP~CR~~l 187 (334)
....| ||.....++.....--.|..=||..|+..-- .....||.|+..-
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 34568 7988766554343444588789999986532 2234699997643
No 130
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=52.07 E-value=52 Score=22.86 Aligned_cols=17 Identities=6% Similarity=0.069 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039186 60 TMAIVTVILVSVFFILG 76 (334)
Q Consensus 60 ~~~iil~ilv~~l~ll~ 76 (334)
.++|+++++..++++.+
T Consensus 12 ~wiIi~svl~GLllL~l 28 (54)
T 2knc_A 12 IWWVLVGVLGGLLLLTI 28 (54)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 55555555554444433
No 131
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=51.57 E-value=16 Score=28.69 Aligned_cols=46 Identities=22% Similarity=0.436 Sum_probs=28.8
Q ss_pred CCcCccccccc-----cCCcceEEcCCCCCccchhHHHHH------H-hcCCCccccc
Q 039186 139 SLECAVCLNEF-----GDEETLRLIPKCSHVFHMDCIDAW------L-SAHNTCPVCR 184 (334)
Q Consensus 139 ~~~C~ICl~~~-----~~~~~~~~lp~C~H~FH~~CI~~W------l-~~~~tCP~CR 184 (334)
...|.+|+..- ..++.+..-..|+..||..|+..+ + ...-.||.|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 35799998763 123344444469999999999532 2 2222577775
No 132
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=50.70 E-value=13 Score=29.45 Aligned_cols=48 Identities=21% Similarity=0.505 Sum_probs=31.2
Q ss_pred CCCCcCccccccccCCcceEEcC--CCCCccchhHHHHHHhcCC----CcccccccccCC
Q 039186 137 KGSLECAVCLNEFGDEETLRLIP--KCSHVFHMDCIDAWLSAHN----TCPVCRANLVPQ 190 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~~~~~lp--~C~H~FH~~CI~~Wl~~~~----tCP~CR~~l~~~ 190 (334)
..+..|.+|.+. ++ +..-- .|.-.||..|+. |.... .||.|.-.+-.+
T Consensus 13 ~~~~~C~~C~~~---G~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 13 MHEDYCFQCGDG---GE-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp SSCSSCTTTCCC---SE-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCCCCCCcCCCC---Cc-EeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 456789999842 43 33332 488899999997 54322 599887655433
No 133
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=50.69 E-value=4.4 Score=36.56 Aligned_cols=44 Identities=30% Similarity=0.693 Sum_probs=25.7
Q ss_pred cCccccccccCCcceEEcCCCCCccchhHHHHHHhc-----CCCcccccc
Q 039186 141 ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA-----HNTCPVCRA 185 (334)
Q Consensus 141 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-----~~tCP~CR~ 185 (334)
.|.+|...-..+ .+...-.|...||..|+.+=|.. .=.||.|..
T Consensus 176 ~C~vC~~~~~~~-~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCC-CeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 477777643223 33344569999999999965532 125999965
No 134
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=49.77 E-value=12 Score=27.22 Aligned_cols=33 Identities=18% Similarity=0.362 Sum_probs=23.8
Q ss_pred CcCccccccccCCcceEEcCCCCCccchhHHHH
Q 039186 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDA 172 (334)
Q Consensus 140 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~ 172 (334)
..|.+|...|.--..-..-..||.+||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 589999999965432223346999999999653
No 135
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=49.76 E-value=13 Score=35.61 Aligned_cols=46 Identities=22% Similarity=0.418 Sum_probs=29.8
Q ss_pred CcCccccccccCCcceEEcCCCCCc--cchhHHHHHHhcC--CCccccccccc
Q 039186 140 LECAVCLNEFGDEETLRLIPKCSHV--FHMDCIDAWLSAH--NTCPVCRANLV 188 (334)
Q Consensus 140 ~~C~ICl~~~~~~~~~~~lp~C~H~--FH~~CI~~Wl~~~--~tCP~CR~~l~ 188 (334)
+.|+|-...|..+ +|-.. |.|. |-..=+....... -.||+|...+.
T Consensus 216 L~CPlS~~ri~~P--~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLTIP--CRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCSSE--EEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeCCCccceeccC--CcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 5699888888554 66665 9998 4433333332322 26999988774
No 136
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=49.42 E-value=8.6 Score=33.89 Aligned_cols=35 Identities=23% Similarity=0.384 Sum_probs=25.3
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHH
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAW 173 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~W 173 (334)
+..|.+|...|.--..-.....||++||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 46899999999644322333469999999996543
No 137
>1mnt_A MNT repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.43.1.1
Probab=48.00 E-value=8.1 Score=28.72 Aligned_cols=19 Identities=42% Similarity=0.674 Sum_probs=16.0
Q ss_pred ccccccccCcHHHHHHHHh
Q 039186 275 DCERFTLRLPAEVRSQLMN 293 (334)
Q Consensus 275 ~~er~tlrlpe~v~~~~~~ 293 (334)
+...||||||+++++.+-.
T Consensus 3 ~~~~f~lRi~~eLh~~L~~ 21 (76)
T 1mnt_A 3 DDPHFNFRMPMEVREKLKF 21 (76)
T ss_dssp SSCCCEEECCHHHHHHHHH
T ss_pred CCCeeeeeCCHHHHHHHHH
Confidence 4578999999999988773
No 138
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=47.98 E-value=15 Score=26.79 Aligned_cols=45 Identities=27% Similarity=0.582 Sum_probs=27.9
Q ss_pred CCCcCccccccccCCcceEEcCC--CC-CccchhHHHHHHhc----CCCcccccccc
Q 039186 138 GSLECAVCLNEFGDEETLRLIPK--CS-HVFHMDCIDAWLSA----HNTCPVCRANL 187 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~--C~-H~FH~~CI~~Wl~~----~~tCP~CR~~l 187 (334)
+...| ||..... +..+ .--. |. .-||..|+. |.. .-.||.|+..-
T Consensus 15 ~~~~C-~C~~~~~-g~MI-~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMI-GCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SSEE-CCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CCEe-EeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 45567 8988643 4332 3334 55 579999997 432 22699997643
No 139
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=47.42 E-value=9.7 Score=33.86 Aligned_cols=50 Identities=22% Similarity=0.493 Sum_probs=33.2
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHh--------cCCCccccccccc
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLS--------AHNTCPVCRANLV 188 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~--------~~~tCP~CR~~l~ 188 (334)
+..|.+|...|.--..-.....||.+||..|-..+.. ....|-.|-..+.
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~ 221 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLN 221 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHC
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhh
Confidence 4689999999975433333446999999999765431 1225777765553
No 140
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=47.07 E-value=10 Score=29.72 Aligned_cols=49 Identities=27% Similarity=0.546 Sum_probs=33.3
Q ss_pred CCcCccccccccCCcceEEcC-CCCCccchhHHHHHH----------hcCCCcccccccc
Q 039186 139 SLECAVCLNEFGDEETLRLIP-KCSHVFHMDCIDAWL----------SAHNTCPVCRANL 187 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp-~C~H~FH~~CI~~Wl----------~~~~tCP~CR~~l 187 (334)
...|.||...+.+.......- .|.-=||..|+..=- ...-.||.|+...
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 357999999986655444443 577789999975321 0234799998754
No 141
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.59 E-value=19 Score=25.66 Aligned_cols=39 Identities=21% Similarity=0.399 Sum_probs=30.7
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
...|+.|-..+...+.+.. -+..||.+| -.|-.|..+|.
T Consensus 9 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~ 47 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSS---LGKDWHKFC--------LKCERCSKTLT 47 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEE---TTEEEETTT--------CBCSSSCCBCC
T ss_pred CCCCcCCCCEeECCeEEEE---CCeEeeCCC--------CCCCCCCCccC
Confidence 4579999999987665543 578899888 56999988886
No 142
>3arc_H Photosystem II reaction center protein H; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3kzi_H* 3bz1_H* 1s5l_H* 2axt_H* 3bz2_H* 3prq_H* 3prr_H* 3a0b_H* 3a0h_H*
Probab=46.47 E-value=28 Score=25.08 Aligned_cols=34 Identities=15% Similarity=0.376 Sum_probs=18.5
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 039186 48 DAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVY 81 (334)
Q Consensus 48 ~~~~~~~~~~~~~~~iil~ilv~~l~ll~~~~i~ 81 (334)
+++....+.|..+.++.+.+.+.++|+++++-+|
T Consensus 15 SeyGKvaPGWGTtplMgv~m~Lf~vFl~iiLeIY 48 (65)
T 3arc_H 15 SEYGKVAPGWGTTPLMAVFMGLFLVFLLIILEIY 48 (65)
T ss_dssp CCTTCCBSTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcccCCccChhHHHHHHHHHHHHHHHHHHHh
Confidence 3445556677766655555555555555554443
No 143
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.39 E-value=23 Score=24.83 Aligned_cols=40 Identities=30% Similarity=0.604 Sum_probs=27.5
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
...|+.|-..+...+.... .-+..||..| ..|-.|...|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVV--ALDRVFHVGC--------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEE--CSSSEECTTT--------CBCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEE--ECCCeEcccC--------CcccccCCcCC
Confidence 4579999988876433322 2467888888 46888888874
No 144
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.97 E-value=23 Score=24.70 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=29.6
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 189 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 189 (334)
...|+.|-..+.+.+.+. . .-+..||..| -+|-.|..+|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~-a~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKL-E-YGGQTWHEHC--------FLCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEE-C-STTCCEETTT--------CBCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEE-E-ECccccCccc--------CeECCCCCcCCC
Confidence 457999999988654332 2 2578899888 468889888753
No 145
>1u9p_A PARC; unknown function; 1.90A {Escherichia coli} SCOP: a.43.1.1
Probab=44.33 E-value=8.3 Score=31.36 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=16.3
Q ss_pred ccccccccCcHHHHHHHHh
Q 039186 275 DCERFTLRLPAEVRSQLMN 293 (334)
Q Consensus 275 ~~er~tlrlpe~v~~~~~~ 293 (334)
+..+|+||||++++++|..
T Consensus 17 ~~~kf~LRLP~eLh~~La~ 35 (120)
T 1u9p_A 17 GGPQFNLRWPREVLDLVRK 35 (120)
T ss_dssp TCCEEEEECCHHHHHHHHH
T ss_pred CCCeeEEeCCHHHHHHHHH
Confidence 4579999999999998773
No 146
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=44.19 E-value=14 Score=30.39 Aligned_cols=50 Identities=16% Similarity=0.385 Sum_probs=31.9
Q ss_pred CCCCcCcccccccc-CCcceEEcCCCCCccchhHHHHHHhc-CC---Cccccccc
Q 039186 137 KGSLECAVCLNEFG-DEETLRLIPKCSHVFHMDCIDAWLSA-HN---TCPVCRAN 186 (334)
Q Consensus 137 ~~~~~C~ICl~~~~-~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~---tCP~CR~~ 186 (334)
.+...|++|...|. ....-+....|.|.+|..|-..-... +. .|=+|+..
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 46678999999993 33333445569999999995432111 11 48888653
No 147
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=43.53 E-value=4.7 Score=31.70 Aligned_cols=45 Identities=20% Similarity=0.491 Sum_probs=29.2
Q ss_pred cCccccccccCCcceEEcCCCCCccchhHHHHHHhcC----CCccccccc
Q 039186 141 ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH----NTCPVCRAN 186 (334)
Q Consensus 141 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~----~tCP~CR~~ 186 (334)
.|.||...-.+. .+..-..|...||..|+.+=|... -.||.|..-
T Consensus 56 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDS-KMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCT-TEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCC-CeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 467777654333 344555699999999998655432 258888543
No 148
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=43.50 E-value=4.9 Score=38.59 Aligned_cols=50 Identities=16% Similarity=0.339 Sum_probs=0.0
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHh-------cCCCcccccccc
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLS-------AHNTCPVCRANL 187 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-------~~~tCP~CR~~l 187 (334)
....|.+|...|.--..-.....||++||..|-..++. ....|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 35679999999864322122235999999999877641 123577775544
No 149
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=43.26 E-value=30 Score=22.26 Aligned_cols=19 Identities=21% Similarity=0.515 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039186 60 TMAIVTVILVSVFFILGFF 78 (334)
Q Consensus 60 ~~~iil~ilv~~l~ll~~~ 78 (334)
+.-|++++++.+.++..+.
T Consensus 13 IAGiVvG~v~gv~li~~l~ 31 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGIL 31 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHHHHHHH
Confidence 4445555554444444433
No 150
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=43.05 E-value=17 Score=28.78 Aligned_cols=45 Identities=24% Similarity=0.458 Sum_probs=28.4
Q ss_pred CcCcccccccc------CCcceEEcCCCCCccchhHHHHHHh-------cCCCccccc
Q 039186 140 LECAVCLNEFG------DEETLRLIPKCSHVFHMDCIDAWLS-------AHNTCPVCR 184 (334)
Q Consensus 140 ~~C~ICl~~~~------~~~~~~~lp~C~H~FH~~CI~~Wl~-------~~~tCP~CR 184 (334)
..|.||+..-. +++.+..--.|+..||..|+..+.. ..-.||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 36999987641 1234444446999999999876531 122577773
No 151
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=42.04 E-value=3.2 Score=33.09 Aligned_cols=47 Identities=23% Similarity=0.611 Sum_probs=30.8
Q ss_pred cCccccccccCCcceEEcCCCCCccchhHHHHHHhcCC----Cccccccccc
Q 039186 141 ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN----TCPVCRANLV 188 (334)
Q Consensus 141 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----tCP~CR~~l~ 188 (334)
.|.||...-..++ +..--.|...||..|+.+=|.... .||.|...+.
T Consensus 60 ~C~~C~~~~~~~~-ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 60 SCILCGTSENDDQ-LLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110 (114)
T ss_dssp CCTTTTCCTTTTT-EEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred ccCcccccCCCCc-eEEcCCCCccccccccCCCccCCCCCCeECccccchhh
Confidence 5778877543343 444446999999999986443322 5998876543
No 152
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.94 E-value=27 Score=24.45 Aligned_cols=40 Identities=30% Similarity=0.511 Sum_probs=29.1
Q ss_pred CCcCccccccccC--CcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186 139 SLECAVCLNEFGD--EETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 139 ~~~C~ICl~~~~~--~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
...|+-|-..+.. .+.+.. .-+..||.+| -.|-.|..+|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~--a~~~~wH~~C--------F~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYIS--FEERQWHNDC--------FNCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEE--CSSCEECTTT--------CBCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceEE--ECCcccCccc--------CEeccCCCcCC
Confidence 4579999999875 333322 2578899988 46999988885
No 153
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.89 E-value=20 Score=26.08 Aligned_cols=39 Identities=26% Similarity=0.588 Sum_probs=30.4
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
...|+-|-..+.+.+.+.. -+..||.+| ..|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLA---LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEE---TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEEE---CCccccccc--------CCcCcCCCCcC
Confidence 4579999999987766544 467899888 56999988875
No 154
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=41.55 E-value=7.1 Score=28.28 Aligned_cols=47 Identities=23% Similarity=0.625 Sum_probs=30.2
Q ss_pred CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHh---cCCCcccccc
Q 039186 137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLS---AHNTCPVCRA 185 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~---~~~tCP~CR~ 185 (334)
.+...| ||.........+ .--.|..=||..|+..--. ..-.||.|+.
T Consensus 17 ~~~~~C-iC~~~~~~~~MI-qCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMI-ECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEE-ECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCCCCEE-ECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 345678 998876533344 3345888899999864321 2336888864
No 155
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=41.30 E-value=15 Score=26.16 Aligned_cols=36 Identities=25% Similarity=0.490 Sum_probs=18.4
Q ss_pred CccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186 142 CAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 142 C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
|+.|-..+..++.+.. -+..||.+| -.|-.|+.+|.
T Consensus 3 C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~ 38 (76)
T 1iml_A 3 CPKCDKEVYFAERVTS---LGKDWHRPC--------LKCEKCGKTLT 38 (76)
T ss_dssp CTTTSSBCCGGGEEEE---TTEEEETTT--------CBCTTTCCBCC
T ss_pred CCCCCCEEECceEEEE---CCccccCCC--------CCccccCccCC
Confidence 5566665554443322 255566555 34556655553
No 156
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.02 E-value=20 Score=25.07 Aligned_cols=39 Identities=15% Similarity=0.314 Sum_probs=28.4
Q ss_pred CcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 140 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
..|+.|-..+.+.+.+... -+..||.+| -+|-.|..+|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETC--------FICHRCQQPIG 44 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTT--------TCCSSSCCCCC
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccC--------CcccccCCccC
Confidence 4799999999876433222 477899888 46888988775
No 157
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=39.75 E-value=93 Score=21.61 Aligned_cols=16 Identities=6% Similarity=0.301 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 039186 60 TMAIVTVILVSVFFIL 75 (334)
Q Consensus 60 ~~~iil~ilv~~l~ll 75 (334)
.++|+++++..++++.
T Consensus 9 ~WiIi~svl~GLLLL~ 24 (54)
T 2l8s_A 9 LWVILLSAFAGLLLLM 24 (54)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4444555544444333
No 158
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.25 E-value=29 Score=24.90 Aligned_cols=41 Identities=24% Similarity=0.474 Sum_probs=29.9
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 189 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 189 (334)
...|+.|-..+...+.+.. .-+..||.+| -+|-.|..+|..
T Consensus 15 ~~~C~~C~~~I~~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVE--YKGTVWHKDC--------FTCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEE--CSSCEEETTT--------CCCSSSCCCCTT
T ss_pred CCcCccCCcccccCceEEE--ECcccccccc--------CchhhCCCccCC
Confidence 3579999999987655422 2477899888 468889888753
No 159
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.22 E-value=23 Score=25.05 Aligned_cols=42 Identities=21% Similarity=0.512 Sum_probs=29.9
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 189 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 189 (334)
....|+-|-..+...+.+... -+..||..| -+|-.|..+|..
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 51 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPE 51 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE--TTEEECTTT--------CCCTTTCCCCGG
T ss_pred CCCCchhcCCccCCCceEEEe--CccEecccc--------CeECCCCCCCCC
Confidence 346799999998765544221 477899888 468888888753
No 160
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=38.06 E-value=57 Score=26.76 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 039186 58 NGTMAIVTVILVSVFFILGFFSVYIRQCTERGR 90 (334)
Q Consensus 58 ~~~~~iil~ilv~~l~ll~~~~i~~r~c~~~~~ 90 (334)
...+.|++++.+..||+++++.-|+|-.++..+
T Consensus 51 ~~ylYIL~vmgffgff~~GImLsYiRSKk~E~s 83 (138)
T 2k21_A 51 LEALYVLMVLGFFGFFTLGIMLSYIRSKKLEHS 83 (138)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred ceeehHHHHHHHHHHHHHHHHHHHhHhhhcccc
Confidence 346778888888888889998889887665443
No 161
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=37.63 E-value=8.1 Score=30.69 Aligned_cols=27 Identities=33% Similarity=0.881 Sum_probs=17.5
Q ss_pred CCCCccchhHHHHHHhcCCCcccccccccCCC
Q 039186 160 KCSHVFHMDCIDAWLSAHNTCPVCRANLVPQP 191 (334)
Q Consensus 160 ~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~ 191 (334)
+||+.|. .=+.....||.|+..-.+.|
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~Ie~P 98 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEWIEEP 98 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCCBCCC
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCccCCc
Confidence 5999981 11233357999998766544
No 162
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.49 E-value=27 Score=25.48 Aligned_cols=40 Identities=35% Similarity=0.633 Sum_probs=30.4
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 189 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 189 (334)
...|+.|-..+.+.+.+.. -+..||..| ..|-.|...|..
T Consensus 15 ~~~C~~C~~~I~~~e~v~a---~~~~wH~~C--------F~C~~C~~~L~~ 54 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLCV---NGHFFHRSC--------FRCHTCEATLWP 54 (82)
T ss_dssp SCBCSSSCCBCCTTTBCCB---TTBCCBTTT--------CBCSSSCCBCCT
T ss_pred CCCCcccCCCcccceEEEE---CCCeeCCCc--------CEEcCCCCCcCC
Confidence 4579999999876655532 577899988 568899888764
No 163
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=35.79 E-value=85 Score=20.38 Aligned_cols=28 Identities=18% Similarity=0.121 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039186 59 GTMAIVTVILVSVFFILGFFSVYIRQCT 86 (334)
Q Consensus 59 ~~~~iil~ilv~~l~ll~~~~i~~r~c~ 86 (334)
..+.|++++...++-.++++++.+++..
T Consensus 11 ~i~lII~~vmaGiIG~IllI~y~I~rl~ 38 (40)
T 1afo_A 11 EITLIIFGVMAGVIGTILLISYGIRRLI 38 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666666666666666666565543
No 164
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=35.78 E-value=89 Score=20.74 Aligned_cols=30 Identities=10% Similarity=0.112 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 039186 60 TMAIVTVILVSVFFILGFFSVYIRQCTERG 89 (334)
Q Consensus 60 ~~~iil~ilv~~l~ll~~~~i~~r~c~~~~ 89 (334)
.-+|..+++..+++++++......+.++++
T Consensus 9 ~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 9 TPLIAAGVIGGLFILVIVGLTFAVYVRRKS 38 (44)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cceEEEeehHHHHHHHHHHHHHHHHhhhhh
Confidence 344666666667777776655554444433
No 165
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.55 E-value=35 Score=24.23 Aligned_cols=40 Identities=23% Similarity=0.504 Sum_probs=28.9
Q ss_pred CCcCccccccccC--CcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186 139 SLECAVCLNEFGD--EETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 139 ~~~C~ICl~~~~~--~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
...|+.|-..+.+ +..... .-+..||.+| -.|-.|..+|.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~--a~~~~wH~~C--------F~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFIC--FQDSQWHSEC--------FNCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEE--ETTEEEEGGG--------CBCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCceeEE--ECCcccCccc--------CChhhCCCcCC
Confidence 3579999999885 323322 2578899988 56999988875
No 166
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=35.37 E-value=25 Score=34.10 Aligned_cols=44 Identities=23% Similarity=0.649 Sum_probs=31.3
Q ss_pred CCCCcCccccccccCCcceEEcC--CCCCccchhHHHHHHhc----------CCCccccc
Q 039186 137 KGSLECAVCLNEFGDEETLRLIP--KCSHVFHMDCIDAWLSA----------HNTCPVCR 184 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~~~~~lp--~C~H~FH~~CI~~Wl~~----------~~tCP~CR 184 (334)
..+..|.+|-+. + .+...- .|...||..||+.++.. .=.|=+|.
T Consensus 91 G~~~yCr~C~~G---g-~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~ 146 (386)
T 2pv0_B 91 GYQSYCSICCSG---E-TLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCL 146 (386)
T ss_dssp SSBCSCTTTCCC---S-SCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTS
T ss_pred CCcccceEcCCC---C-eEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcC
Confidence 456789999874 3 344444 69999999999999832 12687785
No 167
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=35.30 E-value=25 Score=24.30 Aligned_cols=41 Identities=22% Similarity=0.553 Sum_probs=30.3
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 189 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 189 (334)
...|+.|-..+...+.+... -+..||..|. .|-.|..+|..
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~ 51 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPE 51 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGG
T ss_pred CccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCC
Confidence 45799999999876654322 4778999884 68889888753
No 168
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=35.19 E-value=14 Score=26.89 Aligned_cols=48 Identities=21% Similarity=0.460 Sum_probs=30.6
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHh-----cCCCcccccccc
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLS-----AHNTCPVCRANL 187 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-----~~~tCP~CR~~l 187 (334)
...| ||...+..+.....--.|.-=||..|+..--. ..-.||.|+...
T Consensus 10 ~~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 10 PVYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp CEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred eeEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccC
Confidence 4455 89887654433334445887899999964321 234699997654
No 169
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=34.08 E-value=32 Score=29.21 Aligned_cols=35 Identities=17% Similarity=0.550 Sum_probs=26.4
Q ss_pred CCCCcCccccccccCCcceEEcC--CCCCccchhHHHHHHh
Q 039186 137 KGSLECAVCLNEFGDEETLRLIP--KCSHVFHMDCIDAWLS 175 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~~~~~lp--~C~H~FH~~CI~~Wl~ 175 (334)
..+..|.||-+- ..+.... .|...||..||+.++.
T Consensus 77 G~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG 113 (159)
T 3a1b_A 77 GYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVG 113 (159)
T ss_dssp SSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTC
T ss_pred CCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcC
Confidence 456789999864 3444443 5889999999999974
No 170
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.97 E-value=35 Score=23.62 Aligned_cols=38 Identities=24% Similarity=0.563 Sum_probs=27.9
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
...|+.|-..+... .+ . .-+..||.+| -+|-.|+.+|.
T Consensus 5 ~~~C~~C~~~I~~~-~~--~-a~~~~~H~~C--------F~C~~C~~~L~ 42 (70)
T 2d8z_A 5 SSGCVQCKKPITTG-GV--T-YREQPWHKEC--------FVCTACRKQLS 42 (70)
T ss_dssp CCBCSSSCCBCCSS-EE--E-SSSSEEETTT--------SBCSSSCCBCT
T ss_pred CCCCcccCCeeccc-eE--E-ECccccCCCC--------CccCCCCCcCC
Confidence 45799999998743 33 2 2578899888 46889988875
No 171
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=33.72 E-value=18 Score=26.17 Aligned_cols=40 Identities=30% Similarity=0.546 Sum_probs=29.5
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 189 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 189 (334)
...|+.|-..+.+.+.+.. -+..||.+| -+|-.|..+|..
T Consensus 7 ~~~C~~C~~~I~~~~~~~a---~~~~~H~~C--------F~C~~C~~~L~~ 46 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQC---DGRSFHRCC--------FLCMVCRKNLDS 46 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEE---TTEEEESSS--------EECSSSCCEECS
T ss_pred CCcCcCcCccccCceeEEe---CCccccccc--------CccCCCCCCCCC
Confidence 4579999999976665433 577899888 458889888753
No 172
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.67 E-value=27 Score=25.09 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=28.1
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
...|+.|-..+... .+. .-+..||.+| .+|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~-~~~---a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVGV-FVK---LRDRHRHPEC--------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCSS-CEE---CSSCEECTTT--------TSCSSSCCCHH
T ss_pred CCccccCCCCccCc-EEE---ECcceeCcCc--------CeeCCCCCCCC
Confidence 45799999998753 332 2578899988 46888888775
No 173
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=33.28 E-value=4.6 Score=25.62 Aligned_cols=16 Identities=19% Similarity=0.771 Sum_probs=10.8
Q ss_pred CCcCccccccccCCcc
Q 039186 139 SLECAVCLNEFGDEET 154 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~ 154 (334)
.+.|+||+..+...+.
T Consensus 5 GFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 5 GFICPQCMKSLGSADE 20 (34)
T ss_dssp EEECTTTCCEESSHHH
T ss_pred ccCCcHHHHHcCCHHH
Confidence 4678888877765443
No 174
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=33.26 E-value=11 Score=37.60 Aligned_cols=49 Identities=20% Similarity=0.432 Sum_probs=31.4
Q ss_pred CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHh-----cCCCcccccccc
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLS-----AHNTCPVCRANL 187 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-----~~~tCP~CR~~l 187 (334)
+...| ||...+..+......-.|.-=||..|+.---. ..-.||.|+...
T Consensus 36 ~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 36 PPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp CCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred CCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 34556 99888753443334445888899999854221 224799997654
No 175
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=33.05 E-value=14 Score=26.00 Aligned_cols=43 Identities=28% Similarity=0.604 Sum_probs=26.2
Q ss_pred CCCcCccccccccCCcceEEcCC--CC-CccchhHHHHHHhc----CCCcccccc
Q 039186 138 GSLECAVCLNEFGDEETLRLIPK--CS-HVFHMDCIDAWLSA----HNTCPVCRA 185 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~--C~-H~FH~~CI~~Wl~~----~~tCP~CR~ 185 (334)
+...| ||..... +. +..--. |. .-||..|+. |.. .-.||.|+.
T Consensus 9 e~~~C-~C~~~~~-g~-mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-SE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-CC-EEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34567 8988642 33 333334 44 579999998 432 226999854
No 176
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=32.28 E-value=15 Score=25.78 Aligned_cols=43 Identities=28% Similarity=0.621 Sum_probs=26.7
Q ss_pred CCCcCccccccccCCcceEEcCC--CC-CccchhHHHHHHhc----CCCcccccc
Q 039186 138 GSLECAVCLNEFGDEETLRLIPK--CS-HVFHMDCIDAWLSA----HNTCPVCRA 185 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~--C~-H~FH~~CI~~Wl~~----~~tCP~CR~ 185 (334)
+...| ||.... .++ +..--. |. .-||..|+. |.. +-.||.|+.
T Consensus 8 e~~yC-~C~~~~-~g~-mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS-YGE-MIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC-CCC-eeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34567 998864 243 333334 55 589999998 332 226999964
No 177
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=31.91 E-value=5.4 Score=29.74 Aligned_cols=19 Identities=26% Similarity=0.810 Sum_probs=15.6
Q ss_pred CCCCccchhHHHHHHhcCCCc
Q 039186 160 KCSHVFHMDCIDAWLSAHNTC 180 (334)
Q Consensus 160 ~C~H~FH~~CI~~Wl~~~~tC 180 (334)
.|++.||..|-..|-. .+|
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C 73 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GEC 73 (80)
T ss_dssp CCSCCEETTTTEECCS--SCS
T ss_pred CCCCeeccccCccccC--Ccc
Confidence 6999999999999844 455
No 178
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.74 E-value=36 Score=25.09 Aligned_cols=40 Identities=28% Similarity=0.554 Sum_probs=30.2
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 189 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 189 (334)
...|+-|-..+.+.+.+. .-+..||..| -.|-.|...|..
T Consensus 15 ~~~C~~C~~~I~~~~~v~---a~~~~~H~~C--------F~C~~C~~~L~~ 54 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLL---ANQQVFHISC--------FRCSYCNNKLSL 54 (91)
T ss_dssp SCBCTTTCCBCCTTSEEE---CSSSEEETTT--------CBCTTTCCBCCT
T ss_pred CCcCccCCCccCCceeEE---ECCCEECCCC--------CeeCCCCCCCCC
Confidence 457999999998766542 2678899988 468889888764
No 179
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=30.18 E-value=26 Score=29.39 Aligned_cols=46 Identities=22% Similarity=0.454 Sum_probs=30.5
Q ss_pred CCCcCcccccccc--CCcceEEcCCCCCccchhHHHHHHhcCC--Ccccccc
Q 039186 138 GSLECAVCLNEFG--DEETLRLIPKCSHVFHMDCIDAWLSAHN--TCPVCRA 185 (334)
Q Consensus 138 ~~~~C~ICl~~~~--~~~~~~~lp~C~H~FH~~CI~~Wl~~~~--tCP~CR~ 185 (334)
++..|++|...|. .+.. .....|.|.+|..|= .|+.... .|=+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g-~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSR-RQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCC-EECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCC-CcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 4678999999874 2333 334469999999996 3443333 3777754
No 180
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=30.16 E-value=27 Score=27.83 Aligned_cols=39 Identities=28% Similarity=0.507 Sum_probs=30.2
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
...|+-|-..+.....+.. -+..||..| .+|-.|+..|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYA---MDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEE---TTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEe---CCcEEcccc--------cCcCcCCCccc
Confidence 3579999999876543433 578899988 56999999886
No 181
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.02 E-value=35 Score=23.68 Aligned_cols=39 Identities=21% Similarity=0.505 Sum_probs=28.1
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 189 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 189 (334)
...|+.|-..+.. ..+.. -+..||.+| .+|-.|..+|..
T Consensus 5 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~C--------F~C~~C~~~L~~ 43 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVIKA---MNNSWHPEC--------FRCDLCQEVLAD 43 (70)
T ss_dssp SSBCSSSCCBCCS-CCEEE---TTEEECTTT--------SBCSSSCCBCSS
T ss_pred CCcCccCCCEecc-eEEEE---CcccccccC--------CEeCCCCCcCCC
Confidence 4579999998874 33332 577899888 468889888764
No 182
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=29.85 E-value=7.6 Score=27.92 Aligned_cols=46 Identities=17% Similarity=0.509 Sum_probs=27.6
Q ss_pred CCcCccccccccCCcceEEc-CCCCCccchhHHHHHH---h-----cCCCcccccc
Q 039186 139 SLECAVCLNEFGDEETLRLI-PKCSHVFHMDCIDAWL---S-----AHNTCPVCRA 185 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~l-p~C~H~FH~~CI~~Wl---~-----~~~tCP~CR~ 185 (334)
...| ||-.....+..+.-- +.|.-=||..|+.--- . .+-.||.||.
T Consensus 10 ~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 10 KVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp EECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 3567 797766555544322 1377779999974211 0 1346999974
No 183
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.52 E-value=29 Score=25.64 Aligned_cols=39 Identities=18% Similarity=0.354 Sum_probs=28.7
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 189 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 189 (334)
...|+.|-..+. ++.+. .-+..||.+| ..|-.|+..|..
T Consensus 25 ~~~C~~C~~~I~-~~~v~---a~~~~~H~~C--------F~C~~C~~~L~~ 63 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPFLV---ALGKSWHPEE--------FNCAHCKNTMAY 63 (90)
T ss_dssp CCBBSSSCCBCC-SCEEE---ETTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCccCCCEec-ceEEE---ECCccccccC--------CccCCCCCCCCC
Confidence 457999999985 33332 2578899888 568999888863
No 184
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=29.43 E-value=46 Score=24.42 Aligned_cols=39 Identities=21% Similarity=0.401 Sum_probs=28.7
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 189 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 189 (334)
...|+.|-..+.. ..+. .-+..||.+| ..|-.|...|..
T Consensus 25 ~~~C~~C~~~I~~-~~~~---a~~~~~H~~C--------F~C~~C~~~L~~ 63 (89)
T 1x64_A 25 MPLCDKCGSGIVG-AVVK---ARDKYRHPEC--------FVCADCNLNLKQ 63 (89)
T ss_dssp CCBCTTTCCBCCS-CCEE---SSSCEECTTT--------CCCSSSCCCTTT
T ss_pred CCCcccCCCEecc-cEEE---ECCceECccC--------CEecCCCCCCCC
Confidence 4579999999875 3332 2678899988 468899888753
No 185
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=28.59 E-value=20 Score=28.17 Aligned_cols=12 Identities=25% Similarity=0.872 Sum_probs=10.7
Q ss_pred ccchhHHHHHHh
Q 039186 164 VFHMDCIDAWLS 175 (334)
Q Consensus 164 ~FH~~CI~~Wl~ 175 (334)
.||..|+..|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999985
No 186
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=28.48 E-value=20 Score=28.11 Aligned_cols=12 Identities=33% Similarity=0.936 Sum_probs=10.7
Q ss_pred ccchhHHHHHHh
Q 039186 164 VFHMDCIDAWLS 175 (334)
Q Consensus 164 ~FH~~CI~~Wl~ 175 (334)
.||..|+..|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 187
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=28.46 E-value=25 Score=22.34 Aligned_cols=17 Identities=6% Similarity=0.350 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039186 68 LVSVFFILGFFSVYIRQ 84 (334)
Q Consensus 68 lv~~l~ll~~~~i~~r~ 84 (334)
++.++++.+.+.+|+|+
T Consensus 17 lll~vii~l~~~~~iRR 33 (35)
T 1iij_A 17 VLLFLILVVVVGILIKR 33 (35)
T ss_dssp HHHHHHHTTTTTHHHHH
T ss_pred HHHHHHHHHHhheEEee
Confidence 33333334444455543
No 188
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=28.45 E-value=15 Score=23.47 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=18.3
Q ss_pred ccccccCcHHHHHHHHh--cccCcccce
Q 039186 277 ERFTLRLPAEVRSQLMN--SSLSRSKSC 302 (334)
Q Consensus 277 er~tlrlpe~v~~~~~~--~~l~~~~s~ 302 (334)
.|+|++||+++..++-. ....+++|-
T Consensus 3 ~ritv~l~~~l~~~Ld~~a~~~g~srS~ 30 (45)
T 2cpg_A 3 KRLTITLSESVLENLEKMAREMGLSKSA 30 (45)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHHTCCHHH
T ss_pred ceEEEecCHHHHHHHHHHHHHHCcCHHH
Confidence 48999999999877653 244455554
No 189
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=28.32 E-value=90 Score=20.74 Aligned_cols=32 Identities=9% Similarity=0.184 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 039186 59 GTMAIVTVILVSVFFILGFFSVYIRQCTERGR 90 (334)
Q Consensus 59 ~~~~iil~ilv~~l~ll~~~~i~~r~c~~~~~ 90 (334)
+....+.+.++.+++++++.....-+.++++.
T Consensus 9 ~~~~~Ia~~vVGvll~vi~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 9 SPLTSIISAVVGILLVVVLGVVFGILIKRRQQ 40 (44)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CcccchHHHHHHHHHHHHHHHHHHhheehhhh
Confidence 36677888888866666655555655555543
No 190
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=28.17 E-value=26 Score=27.57 Aligned_cols=37 Identities=24% Similarity=0.599 Sum_probs=20.1
Q ss_pred cCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccc
Q 039186 141 ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANL 187 (334)
Q Consensus 141 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l 187 (334)
.|+.|-..+...+.+.. .-+..||..| ..|-.|...|
T Consensus 10 ~C~~C~~~I~~~e~~~~--a~~~~~H~~C--------F~C~~C~~~L 46 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMR--VKDKVYHLEC--------FKCAACQKHF 46 (123)
T ss_dssp CCSSSSCCCCTTCCCCC--CSSCCCCTTT--------CBCTTTCCBC
T ss_pred cccCCCCeecCCceEEE--ECCccccccc--------CccccCCCCC
Confidence 57777776654332211 1356666666 3455565555
No 191
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.31 E-value=55 Score=23.48 Aligned_cols=39 Identities=23% Similarity=0.424 Sum_probs=28.4
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 189 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 189 (334)
...|+-|-..+. +..+. .-+..||.+| .+|-.|..+|..
T Consensus 15 ~~~C~~C~~~I~-~~~v~---a~~~~~H~~C--------F~C~~C~~~L~~ 53 (79)
T 2cor_A 15 KYICQKCHAIID-EQPLI---FKNDPYHPDH--------FNCANCGKELTA 53 (79)
T ss_dssp CCBCTTTCCBCC-SCCCC---CSSSCCCTTT--------SBCSSSCCBCCT
T ss_pred CCCCccCCCEec-ceEEE---ECcceeCCCC--------CEeCCCCCccCC
Confidence 457999999987 33332 3577899888 469999888863
No 192
>2ay0_A Bifunctional PUTA protein; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.43.1.11
Probab=27.30 E-value=15 Score=25.66 Aligned_cols=27 Identities=11% Similarity=0.268 Sum_probs=21.4
Q ss_pred ccccccCcHHHHHHHH--hcccCccccee
Q 039186 277 ERFTLRLPAEVRSQLM--NSSLSRSKSCV 303 (334)
Q Consensus 277 er~tlrlpe~v~~~~~--~~~l~~~~s~~ 303 (334)
..+|+|||++...++- +.+..|++|.+
T Consensus 4 ~~~svrL~~el~~rL~~lA~~~~rs~s~l 32 (58)
T 2ay0_A 4 TTMGVMLDDATRERIKSAATRIDRTPHWL 32 (58)
T ss_dssp EEEEEEECHHHHHHHHHHHHHTTCCHHHH
T ss_pred cceEeECCHHHHHHHHHHHHHHCcCHHHH
Confidence 4679999999987765 45788888875
No 193
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=27.23 E-value=42 Score=23.68 Aligned_cols=40 Identities=25% Similarity=0.492 Sum_probs=28.6
Q ss_pred CCcCccccccccC---CcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186 139 SLECAVCLNEFGD---EETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 139 ~~~C~ICl~~~~~---~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
...|+-|-..+.. ...... .-+..||..| -+|-.|..+|.
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~ 57 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVA--YEGQSWHDYC--------FHCKKCSVNLA 57 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEE--ETTEEEETTT--------CBCSSSCCBCT
T ss_pred CccCcccCCcccCCCCCceeEE--ECcceeCccc--------CEehhcCCCCC
Confidence 3579999999885 323322 1477899988 46999988885
No 194
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=26.64 E-value=1e+02 Score=22.56 Aligned_cols=31 Identities=26% Similarity=0.578 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 039186 60 TMAIVTVILVSVFFILGFFSVYIRQCTERGR 90 (334)
Q Consensus 60 ~~~iil~ilv~~l~ll~~~~i~~r~c~~~~~ 90 (334)
++-+.-.|+.+++|+++++.+.-.+|.....
T Consensus 15 tLRiGGLifA~vLfi~GI~iilS~KckCk~~ 45 (72)
T 2jo1_A 15 SLQIGGLVIAGILFILGILIVLSRRCRCKFN 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhccchHHHHHHHHHHHHHHHcCccccCCC
Confidence 3444444555666677777776666654443
No 195
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.55 E-value=40 Score=23.30 Aligned_cols=38 Identities=24% Similarity=0.567 Sum_probs=27.1
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
...|+.|-..+.. +.+.. -+..||.+| -+|-.|..+|.
T Consensus 5 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~C--------F~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITS-GGITY---QDQPWHADC--------FVCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCT-TCEEE---TTEEECTTT--------TBCTTTCCBCT
T ss_pred cCCCcccCCEeCc-ceEEE---CccccccCc--------CEECCCCCCCC
Confidence 4579999988864 33332 467888888 46888888875
No 196
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.45 E-value=43 Score=24.02 Aligned_cols=39 Identities=26% Similarity=0.526 Sum_probs=27.6
Q ss_pred CcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 140 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
..|+.|-..+..+..+.. .-+..||..| ..|-.|..+|.
T Consensus 16 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~ 54 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELF--YEDRHFHEGC--------FRCCRCQRSLA 54 (82)
T ss_dssp CBCTTTCCBCCSSCCBCC--CSSCCCBTTT--------SBCTTTCCBCS
T ss_pred CcCccCCCccccCcEEEE--eCCccccccC--------CeecCCCCccC
Confidence 479999999874333311 2477899888 46889988875
No 197
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=25.73 E-value=48 Score=24.09 Aligned_cols=30 Identities=27% Similarity=0.684 Sum_probs=23.6
Q ss_pred CCCcCccccccccCCcceEEcCCC-CCccchhHHHH
Q 039186 138 GSLECAVCLNEFGDEETLRLIPKC-SHVFHMDCIDA 172 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~C-~H~FH~~CI~~ 172 (334)
+..-|.||.++ ..++.+. | +-+||..|..+
T Consensus 7 e~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE 37 (67)
T 2d8v_A 7 GLPWCCICNED----ATLRCAG-CDGDLYCARCFRE 37 (67)
T ss_dssp CCSSCTTTCSC----CCEEETT-TTSEEECSSHHHH
T ss_pred CCCeeEEeCCC----CeEEecC-CCCceehHHHHHH
Confidence 34569999987 4687776 9 78999999666
No 198
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=25.66 E-value=18 Score=25.67 Aligned_cols=45 Identities=24% Similarity=0.544 Sum_probs=26.5
Q ss_pred CCCcCccccccccCCcceEEcCC--CC-CccchhHHHHHHh--cCCCcccccc
Q 039186 138 GSLECAVCLNEFGDEETLRLIPK--CS-HVFHMDCIDAWLS--AHNTCPVCRA 185 (334)
Q Consensus 138 ~~~~C~ICl~~~~~~~~~~~lp~--C~-H~FH~~CI~~Wl~--~~~tCP~CR~ 185 (334)
+...| ||.... .+. +..--. |. .-||..|+..=-. .+-.||.|+.
T Consensus 10 e~~yC-~C~~~~-~g~-MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVS-YGE-MIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCC-CCC-eeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 34567 998863 243 333334 44 6899999872111 1236999964
No 199
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=25.37 E-value=62 Score=24.02 Aligned_cols=37 Identities=22% Similarity=0.565 Sum_probs=18.5
Q ss_pred CcCccccccccC-CcceEEcCCCCCccchhHHHHHHhcCCCcccccccc
Q 039186 140 LECAVCLNEFGD-EETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANL 187 (334)
Q Consensus 140 ~~C~ICl~~~~~-~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l 187 (334)
..|+.|-..+.. +..+.. -+..||..| -+|-.|..+|
T Consensus 6 ~~C~~C~~~I~~~~~~~~a---~~~~~H~~C--------F~C~~C~~~L 43 (101)
T 2cup_A 6 SGCVECRKPIGADSKEVHY---KNRFWHDTC--------FRCAKCLHPL 43 (101)
T ss_dssp CBCSSSCCBCCSSSCEEEE---TTEEEETTT--------CCCSSSCCCT
T ss_pred CcCcccCCcccCCceEEEE---CccChhhcC--------CcccccCCCC
Confidence 356666666643 222222 245566555 3455555555
No 200
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=24.42 E-value=35 Score=23.41 Aligned_cols=38 Identities=13% Similarity=0.406 Sum_probs=28.1
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
...|+.|-..+. ++.+ . .-+..||.+| -.|-.|..+|.
T Consensus 5 ~~~C~~C~~~I~-~~~~--~-a~~~~~H~~C--------F~C~~C~~~L~ 42 (66)
T 1nyp_A 5 VPICGACRRPIE-GRVV--N-AMGKQWHVEH--------FVCAKCEKPFL 42 (66)
T ss_dssp CCEETTTTEECC-SCEE--C-CTTSBEETTT--------CBCTTTCCBCS
T ss_pred CCCCcccCCEec-ceEE--E-ECccccccCc--------CEECCCCCCCC
Confidence 357999999987 4332 2 2578899888 46999988885
No 201
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=24.18 E-value=8.9 Score=28.82 Aligned_cols=44 Identities=27% Similarity=0.633 Sum_probs=26.1
Q ss_pred Ccccccccc--CCcceEEcCCCCCccchhHHHHHHhcCC--Ccccccc
Q 039186 142 CAVCLNEFG--DEETLRLIPKCSHVFHMDCIDAWLSAHN--TCPVCRA 185 (334)
Q Consensus 142 C~ICl~~~~--~~~~~~~lp~C~H~FH~~CI~~Wl~~~~--tCP~CR~ 185 (334)
|+-|-..+. .+...+..|.|++.||..|-..|=..|. +|..-+.
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~ 75 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQN 75 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHH
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCchhhcCCCCChHHHHH
Confidence 555544332 1222345567999999999999833333 5755533
No 202
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=24.06 E-value=25 Score=26.91 Aligned_cols=46 Identities=17% Similarity=0.370 Sum_probs=26.6
Q ss_pred CCCCcCccccccccCCcceEEcCCCC---CccchhHHHHHH--hcCCCccc-ccc
Q 039186 137 KGSLECAVCLNEFGDEETLRLIPKCS---HVFHMDCIDAWL--SAHNTCPV-CRA 185 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~~~~~~~lp~C~---H~FH~~CI~~Wl--~~~~tCP~-CR~ 185 (334)
.+...| ||..... ++.+ ..-.|. --||..|+..=- ...-.||. |+.
T Consensus 24 ~~~~yC-iC~~~~~-g~MI-~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY-GPMV-ACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCS-SSEE-CCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCC-CCEE-EecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 345678 9987532 3333 333444 569999986211 12236999 964
No 203
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=24.02 E-value=1.6e+02 Score=19.30 Aligned_cols=17 Identities=6% Similarity=0.069 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039186 60 TMAIVTVILVSVFFILG 76 (334)
Q Consensus 60 ~~~iil~ilv~~l~ll~ 76 (334)
.++|+++++..++++..
T Consensus 10 ~wiIi~s~l~GLllL~l 26 (42)
T 2k1a_A 10 IWWVLVGVLGGLLLLTI 26 (42)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45555555554444443
No 204
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.87 E-value=61 Score=23.11 Aligned_cols=37 Identities=27% Similarity=0.593 Sum_probs=27.5
Q ss_pred CcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 140 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
..|+.|-..+. ++.+.. -+..||.+| .+|-.|..+|.
T Consensus 16 ~~C~~C~~~I~-~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVSA---LGKTYHPDC--------FVCAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCC-SCCEEE---TTEEECTTT--------SSCSSSCCCCC
T ss_pred CcCccccCEec-cceEEE---CCceeCccC--------CccccCCCCCC
Confidence 47999999987 344432 578899888 46888888775
No 205
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=23.78 E-value=18 Score=31.63 Aligned_cols=26 Identities=27% Similarity=0.649 Sum_probs=16.6
Q ss_pred ceEEcCCCCCccchhHHHHHHhcCCCccccccc
Q 039186 154 TLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRAN 186 (334)
Q Consensus 154 ~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~ 186 (334)
.....+.|||++-. ..+ ..||+|..+
T Consensus 170 ~~~~C~~CG~i~~g--~~p-----~~CP~C~~~ 195 (202)
T 1yuz_A 170 KFHLCPICGYIHKG--EDF-----EKCPICFRP 195 (202)
T ss_dssp CEEECSSSCCEEES--SCC-----SBCTTTCCB
T ss_pred cEEEECCCCCEEcC--cCC-----CCCCCCCCC
Confidence 45566679998642 112 379999764
No 206
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.30 E-value=65 Score=22.71 Aligned_cols=38 Identities=21% Similarity=0.452 Sum_probs=27.4
Q ss_pred CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
...|+-|-..+.. ..+ . .-+..||.+| .+|-.|..+|.
T Consensus 5 ~~~C~~C~~~I~~-~~v--~-a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 5 SSGCDSCEKYITG-RVL--E-AGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CCSCSSSCCCCSS-CCB--C-CSSCCBCTTT--------SCCSSSCCCCC
T ss_pred cCCcccCCCEecC-eeE--E-eCCCCCCCCc--------CEeCCCCCCCC
Confidence 3479999998865 222 2 3678899888 46888888875
No 207
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=23.28 E-value=19 Score=23.92 Aligned_cols=27 Identities=11% Similarity=0.322 Sum_probs=20.4
Q ss_pred ccccccCcHHHHHHHH--hcccCccccee
Q 039186 277 ERFTLRLPAEVRSQLM--NSSLSRSKSCV 303 (334)
Q Consensus 277 er~tlrlpe~v~~~~~--~~~l~~~~s~~ 303 (334)
...|+|||++...++- +.+..|++|.+
T Consensus 4 ~~~sirl~~~l~~~l~~lA~~~~rs~s~l 32 (52)
T 2gpe_A 4 TTMGVKLDDATRERIKSAATRIDRTPHWL 32 (52)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHTTCCHHHH
T ss_pred ceEEEECCHHHHHHHHHHHHHHCcCHHHH
Confidence 4679999999987765 34677777764
No 208
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=22.81 E-value=18 Score=25.48 Aligned_cols=36 Identities=19% Similarity=0.538 Sum_probs=22.1
Q ss_pred CCcCccccccccCCcceEEc--CC--CCCccchhHHHHHH
Q 039186 139 SLECAVCLNEFGDEETLRLI--PK--CSHVFHMDCIDAWL 174 (334)
Q Consensus 139 ~~~C~ICl~~~~~~~~~~~l--p~--C~H~FH~~CI~~Wl 174 (334)
...|+-|...++..+-...+ .. |++.||..|...|-
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~ 45 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWE 45 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcc
Confidence 45799999888765422111 12 66667777766664
No 209
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=22.74 E-value=1.3e+02 Score=19.64 Aligned_cols=8 Identities=0% Similarity=0.335 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 039186 60 TMAIVTVI 67 (334)
Q Consensus 60 ~~~iil~i 67 (334)
..+|++++
T Consensus 9 ~~~Iv~gv 16 (43)
T 2k9j_B 9 ILVVLLSV 16 (43)
T ss_dssp HHHHHHHH
T ss_pred EeehHHHH
Confidence 33444443
No 210
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=22.74 E-value=94 Score=22.52 Aligned_cols=30 Identities=17% Similarity=0.307 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 039186 60 TMAIVTVILVSVFFILGFFSVYIRQCTERG 89 (334)
Q Consensus 60 ~~~iil~ilv~~l~ll~~~~i~~r~c~~~~ 89 (334)
++-+.-.|+.+++|+++++.+.-.+|..+.
T Consensus 16 tLRigGLifA~vLfi~GI~iilS~kcrCk~ 45 (67)
T 2jp3_A 16 SLQLGGLIFGGLLCIAGIALALSGKCKCRR 45 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HheecchhhHHHHHHHHHHHHHcCcccccC
Confidence 334444455566666777766655555443
No 211
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=22.23 E-value=95 Score=24.77 Aligned_cols=9 Identities=0% Similarity=0.198 Sum_probs=3.9
Q ss_pred chhHHHHHH
Q 039186 57 FNGTMAIVT 65 (334)
Q Consensus 57 ~~~~~~iil 65 (334)
|+..+-+.+
T Consensus 92 wwkn~K~~i 100 (119)
T 2kog_A 92 WWKNLKMMI 100 (119)
T ss_dssp SCHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444333
No 212
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.04 E-value=57 Score=23.22 Aligned_cols=37 Identities=16% Similarity=0.398 Sum_probs=26.7
Q ss_pred CcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 140 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
..|+.|-..+. +..+ . .-+..||.+| -.|-.|...|.
T Consensus 16 ~~C~~C~~~I~-~~~~--~-a~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 1x6a_A 16 EFCHGCSLLMT-GPFM--V-AGEFKYHPEC--------FACMSCKVIIE 52 (81)
T ss_dssp CBCTTTCCBCC-SCCB--C-CTTCCBCTTS--------CBCTTTCCBCC
T ss_pred CcCccCCCCcC-ceEE--E-ECCceecccc--------CCccCCCCccC
Confidence 46999999887 3333 2 2578889887 46888988875
No 213
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=22.00 E-value=21 Score=26.06 Aligned_cols=19 Identities=32% Similarity=0.611 Sum_probs=14.0
Q ss_pred HHHHhcCCCcccccccccC
Q 039186 171 DAWLSAHNTCPVCRANLVP 189 (334)
Q Consensus 171 ~~Wl~~~~tCP~CR~~l~~ 189 (334)
++||..--.||+|+.++..
T Consensus 2 d~~LLeiL~CP~ck~~L~~ 20 (69)
T 2pk7_A 2 DTKLLDILACPICKGPLKL 20 (69)
T ss_dssp -CCGGGTCCCTTTCCCCEE
T ss_pred ChHHHhheeCCCCCCcCeE
Confidence 4566666789999988864
No 214
>1z65_A PRPLP, prion-like protein doppel, doppelganger; transmembrane helix, DHPC, mouse doppel, unknown function; NMR {Synthetic}
Probab=21.47 E-value=58 Score=19.79 Aligned_cols=14 Identities=29% Similarity=0.240 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHhh
Q 039186 21 GVVNFLFLFLYLHA 34 (334)
Q Consensus 21 ~~~~~l~~~~~~~~ 34 (334)
-|+++++.+|+.++
T Consensus 8 ~wlai~c~LLfs~L 21 (30)
T 1z65_A 8 WWVAILCMLLASHL 21 (30)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhH
Confidence 57888888877544
No 215
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=20.89 E-value=74 Score=24.82 Aligned_cols=50 Identities=16% Similarity=0.349 Sum_probs=34.0
Q ss_pred CCCCcCccccccccC-CcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186 137 KGSLECAVCLNEFGD-EETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188 (334)
Q Consensus 137 ~~~~~C~ICl~~~~~-~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 188 (334)
.+-+.|..|-..+.. +..... .=+..||..|..+-+.....|..|...|.
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~--~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYY--KLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEE--ETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred HHHcccCcCCCccccCCCeEEE--ECCEEeecCchhhhCCCccChhhcCCccC
Confidence 356788888888753 333333 24778888888775554447999988775
Done!