BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039187
         (265 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
           Marxianus In Complex With Glucose
 pdb|3AC0|B Chain B, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
           Marxianus In Complex With Glucose
 pdb|3AC0|C Chain C, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
           Marxianus In Complex With Glucose
 pdb|3AC0|D Chain D, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
           Marxianus In Complex With Glucose
          Length = 845

 Score = 28.9 bits (63), Expect = 3.1,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 6/103 (5%)

Query: 149 AVLLGSLS--WDLGGRHDQKSQDLFNATGSMFTAIISSAFNTIMVE---VPHIFVQSLVY 203
           AVL+  L+  W+  G +D+++ DL   T  +  A++ +  NT++V     P  F      
Sbjct: 577 AVLIIGLNGEWETEG-YDRENMDLPKRTNELVRAVLKANPNTVIVNQSGTPVEFPWLEDA 635

Query: 204 SVIVDAMMGFDRTASKFFRLIPGFMIPGPRIPIRWRWYYWANP 246
           + +V A  G +   +    ++ G ++P  ++ + W +    NP
Sbjct: 636 NALVQAWYGGNELGNAIADVLYGDVVPNGKLSLSWPFKLQDNP 678


>pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
           Kluyveromyces Marxianus
 pdb|3ABZ|B Chain B, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
           Kluyveromyces Marxianus
 pdb|3ABZ|C Chain C, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
           Kluyveromyces Marxianus
 pdb|3ABZ|D Chain D, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
           Kluyveromyces Marxianus
          Length = 845

 Score = 28.9 bits (63), Expect = 3.4,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 6/103 (5%)

Query: 149 AVLLGSLS--WDLGGRHDQKSQDLFNATGSMFTAIISSAFNTIMVE---VPHIFVQSLVY 203
           AVL+  L+  W+  G +D+++ DL   T  +  A++ +  NT++V     P  F      
Sbjct: 577 AVLIIGLNGEWETEG-YDRENXDLPKRTNELVRAVLKANPNTVIVNQSGTPVEFPWLEDA 635

Query: 204 SVIVDAMMGFDRTASKFFRLIPGFMIPGPRIPIRWRWYYWANP 246
           + +V A  G +   +    ++ G ++P  ++ + W +    NP
Sbjct: 636 NALVQAWYGGNELGNAIADVLYGDVVPNGKLSLSWPFKLQDNP 678


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.139    0.453 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,835,840
Number of Sequences: 62578
Number of extensions: 313046
Number of successful extensions: 709
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 708
Number of HSP's gapped (non-prelim): 3
length of query: 265
length of database: 14,973,337
effective HSP length: 97
effective length of query: 168
effective length of database: 8,903,271
effective search space: 1495749528
effective search space used: 1495749528
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)