Query 039187
Match_columns 265
No_of_seqs 140 out of 1702
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 07:10:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039187.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039187hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0065 Pleiotropic drug resis 100.0 7.3E-53 1.6E-57 405.6 22.6 260 1-264 961-1320(1391)
2 PLN03140 ABC transporter G fam 100.0 4.4E-46 9.6E-51 376.0 26.4 263 1-264 1050-1412(1470)
3 KOG0061 Transporter, ABC super 100.0 8.7E-45 1.9E-49 341.1 24.6 252 1-261 201-551 (613)
4 TIGR00956 3a01205 Pleiotropic 100.0 5.5E-44 1.2E-48 361.5 24.0 254 1-263 240-616 (1394)
5 KOG0065 Pleiotropic drug resis 100.0 2.4E-44 5.1E-49 347.0 18.9 255 1-263 291-655 (1391)
6 TIGR00955 3a01204 The Eye Pigm 100.0 2.1E-43 4.5E-48 334.2 23.3 254 1-263 197-556 (617)
7 PLN03140 ABC transporter G fam 100.0 2E-43 4.4E-48 356.8 24.4 256 1-262 367-732 (1470)
8 TIGR00956 3a01205 Pleiotropic 100.0 6.6E-43 1.4E-47 353.6 26.2 259 1-263 933-1300(1394)
9 PLN03211 ABC transporter G-25; 100.0 4.3E-42 9.4E-47 325.8 23.3 248 1-262 237-599 (659)
10 PF01061 ABC2_membrane: ABC-2 99.6 1.3E-15 2.7E-20 125.1 4.8 137 118-259 1-210 (210)
11 TIGR01247 drrB daunorubicin re 99.0 4.3E-09 9.4E-14 88.5 9.9 135 126-260 1-207 (236)
12 TIGR01291 nodJ ABC-2 type tran 98.8 3.7E-08 8.1E-13 83.8 11.8 140 119-261 6-220 (253)
13 TIGR03861 phenyl_ABC_PedC alco 98.8 9.8E-08 2.1E-12 81.2 12.2 140 117-257 1-220 (253)
14 TIGR00025 Mtu_efflux ABC trans 98.8 9E-08 2E-12 80.4 11.5 124 132-261 2-200 (232)
15 COG1131 CcmA ABC-type multidru 98.5 1.2E-07 2.6E-12 82.4 5.0 64 1-70 167-231 (293)
16 PRK15066 inner membrane transp 98.5 1.5E-06 3.3E-11 74.1 11.6 144 116-259 6-220 (257)
17 COG3638 ABC-type phosphate/pho 98.5 3E-07 6.4E-12 75.8 5.8 61 1-67 178-239 (258)
18 TIGR03062 pip_yhgE_Cterm YhgE/ 98.4 4.3E-07 9.4E-12 74.8 5.5 78 184-261 62-176 (208)
19 COG1120 FepC ABC-type cobalami 98.3 6.5E-07 1.4E-11 75.6 4.8 54 1-56 169-223 (258)
20 PRK13537 nodulation ABC transp 98.1 2.4E-06 5.2E-11 74.8 4.7 59 1-65 169-227 (306)
21 COG4152 ABC-type uncharacteriz 98.1 4.1E-06 9E-11 69.5 5.3 63 1-69 161-223 (300)
22 PRK13643 cbiO cobalt transport 98.1 4.4E-06 9.6E-11 72.5 5.5 54 1-56 175-228 (288)
23 COG1121 ZnuC ABC-type Mn/Zn tr 98.1 3.3E-06 7.2E-11 71.0 4.5 53 1-56 170-222 (254)
24 COG3840 ThiQ ABC-type thiamine 98.1 5.8E-06 1.3E-10 65.7 4.9 54 1-56 160-214 (231)
25 PRK13536 nodulation factor exp 98.1 4.6E-06 1E-10 74.0 4.8 59 1-65 203-261 (340)
26 PRK11614 livF leucine/isoleuci 98.0 6E-06 1.3E-10 69.5 4.5 54 1-56 168-221 (237)
27 TIGR01188 drrA daunorubicin re 98.0 6.8E-06 1.5E-10 71.8 4.8 59 1-65 155-213 (302)
28 COG0444 DppD ABC-type dipeptid 98.0 7.1E-06 1.5E-10 70.7 4.4 54 1-56 184-238 (316)
29 COG1126 GlnQ ABC-type polar am 98.0 1.2E-05 2.6E-10 65.6 5.4 54 1-56 167-220 (240)
30 COG4604 CeuD ABC-type enteroch 98.0 1.1E-05 2.4E-10 65.0 4.9 54 1-56 166-220 (252)
31 cd03217 ABC_FeS_Assembly ABC-t 98.0 1.3E-05 2.8E-10 65.7 5.2 62 1-69 135-197 (200)
32 TIGR01288 nodI ATP-binding ABC 97.9 1.1E-05 2.3E-10 70.6 4.8 58 1-64 166-223 (303)
33 cd03219 ABC_Mj1267_LivG_branch 97.9 1.1E-05 2.3E-10 67.9 4.6 54 1-56 174-227 (236)
34 PRK09536 btuD corrinoid ABC tr 97.9 9E-06 1.9E-10 73.6 4.3 54 1-56 170-223 (402)
35 PRK10619 histidine/lysine/argi 97.9 1.3E-05 2.9E-10 68.2 4.7 54 1-56 183-236 (257)
36 cd03261 ABC_Org_Solvent_Resist 97.9 1.1E-05 2.3E-10 67.9 4.1 54 1-56 167-221 (235)
37 PRK09493 glnQ glutamine ABC tr 97.9 1.4E-05 3E-10 67.4 4.8 54 1-56 167-220 (240)
38 cd03224 ABC_TM1139_LivF_branch 97.9 1.2E-05 2.6E-10 66.8 4.3 54 1-56 163-216 (222)
39 COG1127 Ttg2A ABC-type transpo 97.9 1.5E-05 3.2E-10 66.1 4.6 59 1-65 176-235 (263)
40 TIGR01248 drrC daunorubicin re 97.9 1E-05 2.2E-10 63.5 3.4 34 223-256 114-147 (152)
41 cd03256 ABC_PhnC_transporter A 97.9 1.6E-05 3.5E-10 66.9 4.9 54 1-56 175-229 (241)
42 cd03218 ABC_YhbG The ABC trans 97.9 1.5E-05 3.3E-10 66.8 4.6 54 1-56 164-217 (232)
43 PRK13652 cbiO cobalt transport 97.9 1.5E-05 3.2E-10 68.8 4.6 54 1-56 168-222 (277)
44 TIGR02314 ABC_MetN D-methionin 97.9 1.4E-05 3E-10 71.0 4.5 54 1-56 171-225 (343)
45 PRK13634 cbiO cobalt transport 97.9 1.4E-05 3.1E-10 69.4 4.3 54 1-56 176-230 (290)
46 PRK13631 cbiO cobalt transport 97.9 1.5E-05 3.3E-10 70.1 4.5 54 1-56 207-260 (320)
47 PRK13651 cobalt transporter AT 97.9 1.7E-05 3.6E-10 69.5 4.6 54 1-56 196-249 (305)
48 COG1122 CbiO ABC-type cobalt t 97.8 1.8E-05 3.9E-10 66.4 4.4 54 1-56 169-223 (235)
49 cd03296 ABC_CysA_sulfate_impor 97.8 1.8E-05 4E-10 66.6 4.5 54 1-56 167-221 (239)
50 TIGR01978 sufC FeS assembly AT 97.8 1.7E-05 3.8E-10 66.8 4.4 54 1-56 175-229 (243)
51 PRK13647 cbiO cobalt transport 97.8 1.8E-05 4E-10 68.1 4.4 54 1-56 169-222 (274)
52 PRK13636 cbiO cobalt transport 97.8 1.8E-05 3.8E-10 68.5 4.3 54 1-56 172-226 (283)
53 TIGR03740 galliderm_ABC gallid 97.8 2.3E-05 4.9E-10 65.3 4.8 54 1-56 155-208 (223)
54 PRK11264 putative amino-acid A 97.8 2E-05 4.2E-10 66.9 4.5 54 1-56 175-228 (250)
55 PRK13637 cbiO cobalt transport 97.8 2E-05 4.3E-10 68.4 4.5 54 1-56 175-229 (287)
56 PRK09473 oppD oligopeptide tra 97.8 2.2E-05 4.7E-10 69.5 4.6 54 1-56 192-246 (330)
57 PRK11231 fecE iron-dicitrate t 97.8 2.3E-05 5E-10 66.7 4.5 54 1-56 169-222 (255)
58 cd03258 ABC_MetN_methionine_tr 97.8 2.2E-05 4.8E-10 65.8 4.3 54 1-56 171-225 (233)
59 PRK14245 phosphate ABC transpo 97.8 2.1E-05 4.7E-10 66.7 4.2 53 1-56 177-229 (250)
60 COG4559 ABC-type hemin transpo 97.8 3.1E-05 6.8E-10 63.1 4.8 54 1-56 172-225 (259)
61 PRK11153 metN DL-methionine tr 97.8 2.4E-05 5.2E-10 69.6 4.5 54 1-56 171-225 (343)
62 PRK11300 livG leucine/isoleuci 97.8 2.6E-05 5.6E-10 66.3 4.4 54 1-56 184-238 (255)
63 COG1123 ATPase components of v 97.8 2.3E-05 5E-10 72.4 4.3 59 1-65 185-244 (539)
64 PRK15093 antimicrobial peptide 97.8 2.7E-05 5.9E-10 68.9 4.6 54 1-56 189-243 (330)
65 TIGR03771 anch_rpt_ABC anchore 97.8 2.8E-05 6.1E-10 64.8 4.4 53 1-56 144-196 (223)
66 PRK13644 cbiO cobalt transport 97.8 2.6E-05 5.7E-10 67.1 4.3 53 1-56 167-219 (274)
67 PRK10771 thiQ thiamine transpo 97.8 3.1E-05 6.8E-10 64.9 4.7 54 1-56 160-214 (232)
68 TIGR03873 F420-0_ABC_ATP propo 97.8 2.9E-05 6.2E-10 66.2 4.5 54 1-56 168-221 (256)
69 PRK13548 hmuV hemin importer A 97.8 3E-05 6.5E-10 66.2 4.6 54 1-56 171-225 (258)
70 PRK13638 cbiO cobalt transport 97.8 3.1E-05 6.6E-10 66.6 4.6 54 1-56 167-220 (271)
71 PRK13639 cbiO cobalt transport 97.8 3E-05 6.4E-10 66.8 4.6 54 1-56 168-221 (275)
72 TIGR03265 PhnT2 putative 2-ami 97.8 2.8E-05 6.2E-10 69.3 4.6 54 1-56 165-219 (353)
73 PRK11022 dppD dipeptide transp 97.8 3.1E-05 6.8E-10 68.4 4.8 54 1-56 184-238 (326)
74 COG4555 NatA ABC-type Na+ tran 97.8 3.3E-05 7.2E-10 62.4 4.4 54 1-56 164-217 (245)
75 cd03295 ABC_OpuCA_Osmoprotecti 97.8 2.9E-05 6.4E-10 65.5 4.4 54 1-56 166-220 (242)
76 PRK10895 lipopolysaccharide AB 97.8 3.2E-05 7E-10 65.2 4.6 54 1-56 168-221 (241)
77 TIGR02315 ABC_phnC phosphonate 97.8 3E-05 6.5E-10 65.4 4.4 54 1-56 176-230 (243)
78 PRK13649 cbiO cobalt transport 97.8 2.9E-05 6.4E-10 67.0 4.4 54 1-56 176-229 (280)
79 PRK13646 cbiO cobalt transport 97.8 3.1E-05 6.7E-10 67.1 4.5 54 1-56 176-230 (286)
80 COG1135 AbcC ABC-type metal io 97.8 4.5E-05 9.8E-10 65.5 5.3 54 1-56 172-226 (339)
81 PRK11831 putative ABC transpor 97.8 3.1E-05 6.8E-10 66.5 4.4 54 1-56 174-228 (269)
82 PRK10851 sulfate/thiosulfate t 97.7 3.2E-05 6.8E-10 69.1 4.6 54 1-56 167-221 (353)
83 PRK03695 vitamin B12-transport 97.7 3.5E-05 7.5E-10 65.4 4.6 54 1-56 164-217 (248)
84 PRK13641 cbiO cobalt transport 97.7 3.3E-05 7.2E-10 67.0 4.5 54 1-56 176-229 (287)
85 PRK10253 iron-enterobactin tra 97.7 3.9E-05 8.5E-10 65.7 4.8 54 1-56 174-228 (265)
86 PRK13547 hmuV hemin importer A 97.7 3.1E-05 6.7E-10 66.7 4.2 54 1-56 185-239 (272)
87 TIGR02770 nickel_nikD nickel i 97.7 3.4E-05 7.5E-10 64.6 4.3 54 1-56 156-210 (230)
88 cd03299 ABC_ModC_like Archeal 97.7 3.9E-05 8.5E-10 64.5 4.7 54 1-56 160-214 (235)
89 cd03294 ABC_Pro_Gly_Bertaine T 97.7 3.8E-05 8.2E-10 66.0 4.6 54 1-56 191-245 (269)
90 TIGR00968 3a0106s01 sulfate AB 97.7 3.7E-05 7.9E-10 64.8 4.4 54 1-56 161-215 (237)
91 TIGR01187 potA spermidine/putr 97.7 3.5E-05 7.5E-10 68.1 4.5 54 1-56 131-185 (325)
92 TIGR03522 GldA_ABC_ATP gliding 97.7 3.5E-05 7.7E-10 67.3 4.5 58 1-65 164-221 (301)
93 TIGR02769 nickel_nikE nickel i 97.7 3.3E-05 7.2E-10 66.1 4.1 54 1-56 181-235 (265)
94 TIGR03005 ectoine_ehuA ectoine 97.7 4.1E-05 8.8E-10 65.0 4.6 54 1-56 177-231 (252)
95 PRK13645 cbiO cobalt transport 97.7 3.5E-05 7.7E-10 66.8 4.3 54 1-56 181-235 (289)
96 TIGR03258 PhnT 2-aminoethylpho 97.7 4E-05 8.7E-10 68.6 4.5 54 1-56 168-223 (362)
97 PRK11650 ugpC glycerol-3-phosp 97.7 4.5E-05 9.8E-10 68.1 4.8 54 1-56 165-219 (356)
98 PRK14268 phosphate ABC transpo 97.7 4.4E-05 9.4E-10 65.1 4.4 53 1-56 185-237 (258)
99 PRK11308 dppF dipeptide transp 97.7 4.2E-05 9E-10 67.6 4.3 54 1-56 185-239 (327)
100 COG1124 DppF ABC-type dipeptid 97.7 5.9E-05 1.3E-09 62.7 4.8 60 1-66 172-232 (252)
101 TIGR01184 ntrCD nitrate transp 97.7 4.1E-05 8.9E-10 64.2 4.1 54 1-56 145-199 (230)
102 PRK10575 iron-hydroxamate tran 97.7 4.5E-05 9.7E-10 65.3 4.3 54 1-56 178-232 (265)
103 PRK14258 phosphate ABC transpo 97.7 5.2E-05 1.1E-09 64.8 4.7 55 1-56 181-240 (261)
104 PRK14267 phosphate ABC transpo 97.7 5.2E-05 1.1E-09 64.4 4.5 53 1-56 180-232 (253)
105 TIGR02142 modC_ABC molybdenum 97.7 5E-05 1.1E-09 67.8 4.6 54 1-56 162-216 (354)
106 PRK11124 artP arginine transpo 97.7 5.5E-05 1.2E-09 63.8 4.6 54 1-56 172-225 (242)
107 PRK15079 oligopeptide ABC tran 97.7 4.7E-05 1E-09 67.3 4.3 54 1-56 192-246 (331)
108 PRK09580 sufC cysteine desulfu 97.7 6.9E-05 1.5E-09 63.4 5.1 54 1-56 176-230 (248)
109 TIGR00972 3a0107s01c2 phosphat 97.7 5.7E-05 1.2E-09 63.9 4.6 53 1-56 175-227 (247)
110 PRK14250 phosphate ABC transpo 97.7 5.8E-05 1.3E-09 63.7 4.6 54 1-56 162-216 (241)
111 CHL00131 ycf16 sulfate ABC tra 97.7 7.3E-05 1.6E-09 63.4 5.2 54 1-56 182-236 (252)
112 PRK10418 nikD nickel transport 97.6 5.4E-05 1.2E-09 64.4 4.3 54 1-56 171-225 (254)
113 PRK14244 phosphate ABC transpo 97.6 5.9E-05 1.3E-09 64.0 4.5 53 1-56 180-232 (251)
114 TIGR03410 urea_trans_UrtE urea 97.6 5.8E-05 1.3E-09 63.1 4.4 54 1-56 162-216 (230)
115 PRK09984 phosphonate/organopho 97.6 6.5E-05 1.4E-09 64.2 4.8 54 1-56 183-237 (262)
116 COG4586 ABC-type uncharacteriz 97.6 8.1E-05 1.8E-09 62.9 5.1 64 1-70 187-251 (325)
117 cd03300 ABC_PotA_N PotA is an 97.6 5.4E-05 1.2E-09 63.5 4.2 54 1-56 161-215 (232)
118 PRK11432 fbpC ferric transport 97.6 5.4E-05 1.2E-09 67.5 4.4 54 1-56 167-221 (351)
119 PRK15112 antimicrobial peptide 97.6 5.7E-05 1.2E-09 64.8 4.4 54 1-56 180-234 (267)
120 TIGR03411 urea_trans_UrtD urea 97.6 5.7E-05 1.2E-09 63.7 4.3 53 1-56 174-226 (242)
121 PRK11144 modC molybdate transp 97.6 5.6E-05 1.2E-09 67.5 4.4 54 1-56 159-213 (352)
122 PRK13650 cbiO cobalt transport 97.6 5.8E-05 1.3E-09 65.2 4.4 53 1-56 171-224 (279)
123 TIGR01186 proV glycine betaine 97.6 6E-05 1.3E-09 67.4 4.6 54 1-56 160-214 (363)
124 PRK13648 cbiO cobalt transport 97.6 6.4E-05 1.4E-09 64.5 4.6 53 1-56 173-226 (269)
125 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.6 6.8E-05 1.5E-09 63.1 4.6 52 1-56 170-221 (238)
126 PRK14270 phosphate ABC transpo 97.6 6E-05 1.3E-09 64.0 4.4 53 1-56 178-230 (251)
127 PRK11000 maltose/maltodextrin 97.6 6E-05 1.3E-09 67.7 4.5 54 1-56 164-218 (369)
128 PRK14247 phosphate ABC transpo 97.6 6.7E-05 1.4E-09 63.6 4.5 53 1-56 177-229 (250)
129 cd03252 ABCC_Hemolysin The ABC 97.6 7.5E-05 1.6E-09 62.8 4.8 52 1-56 169-220 (237)
130 PRK14239 phosphate transporter 97.6 6.9E-05 1.5E-09 63.6 4.6 53 1-56 179-231 (252)
131 PRK14253 phosphate ABC transpo 97.6 6.5E-05 1.4E-09 63.7 4.3 53 1-56 176-228 (249)
132 PRK14262 phosphate ABC transpo 97.6 7E-05 1.5E-09 63.5 4.5 53 1-56 177-229 (250)
133 PRK11701 phnK phosphonate C-P 97.6 7.4E-05 1.6E-09 63.7 4.6 54 1-56 182-236 (258)
134 PRK14269 phosphate ABC transpo 97.6 7.2E-05 1.6E-09 63.3 4.5 53 1-56 173-225 (246)
135 PRK14273 phosphate ABC transpo 97.6 7.3E-05 1.6E-09 63.6 4.5 53 1-56 181-233 (254)
136 PRK13635 cbiO cobalt transport 97.6 8E-05 1.7E-09 64.3 4.8 53 1-56 171-224 (279)
137 PRK14274 phosphate ABC transpo 97.6 7.5E-05 1.6E-09 63.7 4.5 53 1-56 186-238 (259)
138 TIGR02323 CP_lyasePhnK phospho 97.6 7.4E-05 1.6E-09 63.5 4.5 54 1-56 179-233 (253)
139 PRK09700 D-allose transporter 97.6 6.3E-05 1.4E-09 70.5 4.4 54 1-56 176-229 (510)
140 PRK14242 phosphate transporter 97.6 7.3E-05 1.6E-09 63.5 4.4 53 1-56 180-232 (253)
141 PRK14248 phosphate ABC transpo 97.6 7.4E-05 1.6E-09 64.1 4.4 53 1-56 195-247 (268)
142 PRK14272 phosphate ABC transpo 97.6 7.7E-05 1.7E-09 63.3 4.5 53 1-56 179-231 (252)
143 PRK09452 potA putrescine/sperm 97.6 7.4E-05 1.6E-09 67.2 4.6 54 1-56 175-229 (375)
144 PRK14236 phosphate transporter 97.6 7.5E-05 1.6E-09 64.2 4.4 53 1-56 199-251 (272)
145 PRK13545 tagH teichoic acids e 97.6 9.3E-05 2E-09 68.7 5.2 61 1-67 174-234 (549)
146 PRK10419 nikE nickel transport 97.6 6.3E-05 1.4E-09 64.6 3.7 54 1-56 182-236 (268)
147 COG1134 TagH ABC-type polysacc 97.6 0.00014 3E-09 60.6 5.5 63 2-70 179-241 (249)
148 PRK14237 phosphate transporter 97.6 8.8E-05 1.9E-09 63.6 4.5 53 1-56 194-246 (267)
149 PRK15439 autoinducer 2 ABC tra 97.6 8.1E-05 1.8E-09 69.8 4.6 54 1-56 171-224 (510)
150 PRK13546 teichoic acids export 97.6 0.00011 2.3E-09 63.1 4.9 54 1-56 174-227 (264)
151 TIGR03415 ABC_choXWV_ATP choli 97.6 8.5E-05 1.8E-09 66.9 4.5 54 1-56 195-249 (382)
152 PRK13633 cobalt transporter AT 97.6 8.2E-05 1.8E-09 64.3 4.2 53 1-56 175-228 (280)
153 PRK14256 phosphate ABC transpo 97.5 9.3E-05 2E-09 62.8 4.4 53 1-56 179-231 (252)
154 PRK10535 macrolide transporter 97.5 0.0007 1.5E-08 65.4 10.8 53 1-56 175-227 (648)
155 PRK15134 microcin C ABC transp 97.5 0.0001 2.2E-09 69.5 4.8 54 1-56 187-241 (529)
156 PRK10938 putative molybdenum t 97.5 9.6E-05 2.1E-09 68.9 4.6 54 1-56 166-219 (490)
157 PRK14240 phosphate transporter 97.5 0.00011 2.5E-09 62.2 4.5 53 1-56 177-229 (250)
158 PRK10070 glycine betaine trans 97.5 0.00011 2.4E-09 66.6 4.5 54 1-56 195-249 (400)
159 PRK13549 xylose transporter AT 97.5 0.00011 2.4E-09 68.8 4.7 54 1-56 436-489 (506)
160 PRK14265 phosphate ABC transpo 97.5 0.00013 2.8E-09 62.9 4.7 53 1-56 192-253 (274)
161 PRK13549 xylose transporter AT 97.5 0.00011 2.4E-09 68.7 4.6 54 1-56 174-227 (506)
162 PRK15056 manganese/iron transp 97.5 0.00013 2.8E-09 62.7 4.6 53 1-56 173-225 (272)
163 PRK14235 phosphate transporter 97.5 0.00012 2.6E-09 62.8 4.3 53 1-56 194-246 (267)
164 PRK13640 cbiO cobalt transport 97.5 0.00012 2.7E-09 63.2 4.4 53 1-56 174-227 (282)
165 PRK10744 pstB phosphate transp 97.5 0.00013 2.7E-09 62.4 4.4 53 1-56 187-239 (260)
166 PRK11247 ssuB aliphatic sulfon 97.5 0.00015 3.3E-09 61.8 4.9 54 1-56 164-218 (257)
167 PRK14257 phosphate ABC transpo 97.5 0.00013 2.8E-09 64.5 4.6 53 1-56 256-308 (329)
168 PRK14238 phosphate transporter 97.5 0.00012 2.7E-09 62.9 4.3 53 1-56 198-250 (271)
169 TIGR01842 type_I_sec_PrtD type 97.5 0.00015 3.2E-09 68.6 5.1 53 1-56 485-537 (544)
170 PRK10762 D-ribose transporter 97.5 0.00013 2.9E-09 68.2 4.8 54 1-56 172-225 (501)
171 cd03251 ABCC_MsbA MsbA is an e 97.5 0.00013 2.9E-09 61.1 4.3 52 1-56 169-220 (234)
172 PRK10261 glutathione transport 97.5 0.00012 2.6E-09 70.2 4.5 54 1-56 494-548 (623)
173 TIGR03864 PQQ_ABC_ATP ABC tran 97.5 0.00018 3.9E-09 60.5 5.0 53 1-56 163-216 (236)
174 PRK14249 phosphate ABC transpo 97.5 0.00015 3.1E-09 61.6 4.4 53 1-56 178-230 (251)
175 PRK14266 phosphate ABC transpo 97.5 0.00015 3.2E-09 61.5 4.4 53 1-56 177-229 (250)
176 PRK14263 phosphate ABC transpo 97.5 0.00016 3.4E-09 61.9 4.6 53 1-56 180-240 (261)
177 TIGR03269 met_CoM_red_A2 methy 97.4 0.00014 3.1E-09 68.3 4.6 54 1-56 458-512 (520)
178 PRK14259 phosphate ABC transpo 97.4 0.00017 3.8E-09 61.9 4.7 54 1-56 185-248 (269)
179 PRK14275 phosphate ABC transpo 97.4 0.00015 3.4E-09 62.8 4.4 53 1-56 213-265 (286)
180 PRK11607 potG putrescine trans 97.4 0.00016 3.5E-09 65.1 4.6 54 1-56 180-234 (377)
181 cd03289 ABCC_CFTR2 The CFTR su 97.4 0.00017 3.6E-09 62.2 4.5 57 1-65 169-225 (275)
182 PRK10762 D-ribose transporter 97.4 0.00016 3.5E-09 67.6 4.7 54 1-56 426-479 (501)
183 PRK15177 Vi polysaccharide exp 97.4 0.00023 4.9E-09 59.0 5.1 62 1-69 135-196 (213)
184 PRK14251 phosphate ABC transpo 97.4 0.00017 3.7E-09 61.2 4.4 53 1-56 178-230 (251)
185 PRK15134 microcin C ABC transp 97.4 0.00015 3.2E-09 68.4 4.4 54 1-56 456-510 (529)
186 PRK14261 phosphate ABC transpo 97.4 0.00016 3.5E-09 61.4 4.2 53 1-56 180-232 (253)
187 PRK14255 phosphate ABC transpo 97.4 0.00018 4E-09 61.0 4.5 53 1-56 179-231 (252)
188 PRK14241 phosphate transporter 97.4 0.00019 4E-09 61.2 4.4 53 1-56 179-237 (258)
189 PRK14260 phosphate ABC transpo 97.4 0.00019 4E-09 61.3 4.4 54 1-56 181-238 (259)
190 PRK10982 galactose/methyl gala 97.4 0.00018 3.9E-09 67.1 4.6 54 1-56 165-218 (491)
191 COG0411 LivG ABC-type branched 97.4 0.00016 3.6E-09 60.1 3.7 54 1-56 180-234 (250)
192 PRK14271 phosphate ABC transpo 97.4 0.0002 4.3E-09 61.8 4.5 53 1-56 194-246 (276)
193 TIGR03269 met_CoM_red_A2 methy 97.4 0.00023 5.1E-09 66.8 5.3 60 1-66 199-259 (520)
194 PRK14252 phosphate ABC transpo 97.4 0.00023 4.9E-09 61.0 4.5 53 1-56 192-244 (265)
195 TIGR02633 xylG D-xylose ABC tr 97.4 0.0002 4.3E-09 67.0 4.5 55 1-57 172-226 (500)
196 cd03254 ABCC_Glucan_exporter_l 97.4 0.0003 6.5E-09 58.7 5.2 52 1-56 170-221 (229)
197 COG4618 ArpD ABC-type protease 97.4 0.00016 3.5E-09 65.9 3.7 62 1-69 503-564 (580)
198 PRK14243 phosphate transporter 97.4 0.00022 4.8E-09 61.0 4.4 53 1-56 182-243 (264)
199 PRK13632 cbiO cobalt transport 97.4 0.00026 5.6E-09 60.9 4.7 53 1-56 173-226 (271)
200 PRK09700 D-allose transporter 97.3 0.00026 5.6E-09 66.4 5.0 54 1-56 440-493 (510)
201 PRK15439 autoinducer 2 ABC tra 97.3 0.00022 4.7E-09 66.9 4.4 54 1-56 434-487 (510)
202 PRK11176 lipid transporter ATP 97.3 0.00026 5.6E-09 67.4 5.0 52 1-56 511-562 (582)
203 PRK11288 araG L-arabinose tran 97.3 0.00025 5.5E-09 66.3 4.7 55 1-57 427-481 (501)
204 PRK10261 glutathione transport 97.3 0.00016 3.6E-09 69.4 3.5 54 1-56 199-253 (623)
205 cd03222 ABC_RNaseL_inhibitor T 97.3 0.00033 7.2E-09 56.3 4.7 65 1-67 102-169 (177)
206 PRK13642 cbiO cobalt transport 97.3 0.00028 6E-09 60.9 4.5 53 1-56 171-224 (277)
207 TIGR01257 rim_protein retinal- 97.3 0.00027 5.9E-09 75.3 5.0 62 1-68 2101-2162(2272)
208 cd03253 ABCC_ATM1_transporter 97.3 0.00028 6E-09 59.3 4.2 52 1-56 168-219 (236)
209 PRK11174 cysteine/glutathione 97.3 0.0003 6.4E-09 67.1 4.9 52 1-56 516-567 (588)
210 PRK14246 phosphate ABC transpo 97.3 0.00032 7E-09 59.8 4.6 53 1-56 184-236 (257)
211 PRK10790 putative multidrug tr 97.3 0.00037 8E-09 66.5 5.1 52 1-56 507-558 (592)
212 COG1125 OpuBA ABC-type proline 97.2 0.00046 1E-08 57.9 4.7 54 1-56 166-220 (309)
213 TIGR03375 type_I_sec_LssB type 97.2 0.00041 8.9E-09 67.5 5.1 57 1-65 632-688 (694)
214 PRK09544 znuC high-affinity zi 97.2 0.00037 8.1E-09 59.2 4.2 53 1-56 151-204 (251)
215 TIGR01846 type_I_sec_HlyB type 97.2 0.00044 9.6E-09 67.3 5.2 52 1-56 624-675 (694)
216 cd03288 ABCC_SUR2 The SUR doma 97.2 0.00043 9.3E-09 59.0 4.5 52 1-56 187-238 (257)
217 COG4138 BtuD ABC-type cobalami 97.2 0.00087 1.9E-08 53.3 5.7 58 1-64 163-220 (248)
218 COG2274 SunT ABC-type bacterio 97.2 0.00034 7.3E-09 67.7 4.1 57 1-65 640-696 (709)
219 TIGR03797 NHPM_micro_ABC2 NHPM 97.2 0.00041 9E-09 67.4 4.8 50 1-56 619-668 (686)
220 TIGR02633 xylG D-xylose ABC tr 97.2 0.00044 9.5E-09 64.7 4.7 54 1-56 434-487 (500)
221 PRK14264 phosphate ABC transpo 97.2 0.00047 1E-08 60.4 4.5 53 1-56 231-284 (305)
222 PRK11248 tauB taurine transpor 97.2 0.0006 1.3E-08 58.1 5.0 55 1-56 159-215 (255)
223 PRK11288 araG L-arabinose tran 97.2 0.00052 1.1E-08 64.2 4.8 54 1-56 171-224 (501)
224 COG1132 MdlB ABC-type multidru 97.1 0.00057 1.2E-08 64.9 5.1 57 1-65 496-552 (567)
225 PRK10789 putative multidrug tr 97.1 0.00061 1.3E-08 64.8 5.0 52 1-56 482-533 (569)
226 PRK11160 cysteine/glutathione 97.1 0.00069 1.5E-08 64.5 5.2 52 1-56 506-557 (574)
227 PRK10982 galactose/methyl gala 97.1 0.00064 1.4E-08 63.5 4.8 54 1-56 422-475 (491)
228 TIGR03796 NHPM_micro_ABC1 NHPM 97.1 0.00064 1.4E-08 66.4 4.8 54 1-64 646-699 (710)
229 COG4987 CydC ABC-type transpor 97.1 0.00067 1.5E-08 62.4 4.4 57 1-65 505-561 (573)
230 TIGR01192 chvA glucan exporter 97.1 0.00081 1.8E-08 64.2 5.2 52 1-56 502-553 (585)
231 COG1123 ATPase components of v 97.0 0.00063 1.4E-08 63.1 4.2 54 1-56 460-514 (539)
232 TIGR00630 uvra excinuclease AB 97.0 0.00062 1.3E-08 67.7 4.4 53 1-56 520-578 (924)
233 TIGR01257 rim_protein retinal- 97.0 0.00068 1.5E-08 72.4 4.8 60 1-67 1092-1151(2272)
234 PRK14254 phosphate ABC transpo 97.0 0.00082 1.8E-08 58.2 4.4 53 1-56 211-264 (285)
235 TIGR01193 bacteriocin_ABC ABC- 97.0 0.00084 1.8E-08 65.5 4.9 55 1-64 642-696 (708)
236 PRK00349 uvrA excinuclease ABC 97.0 0.00081 1.8E-08 67.0 4.7 53 1-56 522-580 (943)
237 PRK13657 cyclic beta-1,2-gluca 97.0 0.00099 2.2E-08 63.6 5.0 52 1-56 502-553 (588)
238 TIGR02203 MsbA_lipidA lipid A 96.9 0.0011 2.3E-08 63.0 4.9 52 1-56 500-551 (571)
239 KOG0057 Mitochondrial Fe/S clu 96.9 0.0012 2.5E-08 60.9 4.8 57 1-65 518-574 (591)
240 TIGR02204 MsbA_rel ABC transpo 96.9 0.0012 2.6E-08 62.8 5.0 52 1-56 507-558 (576)
241 COG1682 TagG ABC-type polysacc 96.9 0.03 6.6E-07 47.9 12.8 146 116-263 16-228 (263)
242 cd03237 ABC_RNaseL_inhibitor_d 96.9 0.0016 3.5E-08 55.1 5.0 69 1-71 146-217 (246)
243 PRK00349 uvrA excinuclease ABC 96.9 0.0015 3.3E-08 65.1 5.4 54 1-56 864-922 (943)
244 COG1118 CysA ABC-type sulfate/ 96.9 0.0011 2.5E-08 57.0 3.8 54 1-56 168-222 (345)
245 PRK00635 excinuclease ABC subu 96.9 0.0013 2.8E-08 69.1 4.9 54 1-56 509-567 (1809)
246 COG4988 CydD ABC-type transpor 96.8 0.0015 3.2E-08 60.7 4.3 52 1-56 487-538 (559)
247 cd03291 ABCC_CFTR1 The CFTR su 96.8 0.0021 4.5E-08 55.6 4.9 52 1-56 190-242 (282)
248 TIGR00630 uvra excinuclease AB 96.7 0.0022 4.8E-08 63.9 5.4 54 1-56 862-920 (924)
249 COG4598 HisP ABC-type histidin 96.6 0.0027 5.9E-08 50.7 4.3 54 1-56 183-236 (256)
250 cd03236 ABC_RNaseL_inhibitor_d 96.6 0.0016 3.5E-08 55.5 3.2 52 1-55 170-221 (255)
251 COG0842 ABC-type multidrug tra 96.6 0.018 3.8E-07 48.8 9.6 39 223-261 213-251 (286)
252 COG1129 MglA ABC-type sugar tr 96.5 0.0032 7E-08 58.1 4.6 54 1-56 176-229 (500)
253 TIGR00958 3a01208 Conjugate Tr 96.5 0.0028 6E-08 61.9 4.3 55 1-65 648-702 (711)
254 COG1137 YhbG ABC-type (unclass 96.4 0.0035 7.6E-08 50.9 3.8 54 1-56 170-223 (243)
255 COG0396 sufC Cysteine desulfur 96.4 0.0061 1.3E-07 50.5 5.2 63 1-71 175-239 (251)
256 PLN03232 ABC transporter C fam 96.4 0.0039 8.5E-08 65.7 5.1 56 1-64 1402-1457(1495)
257 PLN03130 ABC transporter C fam 96.4 0.0041 9E-08 65.8 4.9 56 1-64 1405-1460(1622)
258 PRK15064 ABC transporter ATP-b 96.4 0.0036 7.9E-08 59.0 4.1 51 1-56 469-520 (530)
259 TIGR00957 MRP_assoc_pro multi 96.3 0.0049 1.1E-07 65.1 5.0 57 1-65 1452-1508(1522)
260 PTZ00243 ABC transporter; Prov 96.2 0.005 1.1E-07 65.0 4.8 56 1-64 1477-1532(1560)
261 COG4608 AppF ABC-type oligopep 96.2 0.0062 1.3E-07 51.7 4.3 54 1-56 140-194 (268)
262 COG4172 ABC-type uncharacteriz 96.2 0.006 1.3E-07 54.6 4.2 54 1-56 188-242 (534)
263 PRK15064 ABC transporter ATP-b 96.2 0.0058 1.3E-07 57.6 4.4 51 1-56 186-237 (530)
264 COG0178 UvrA Excinuclease ATPa 96.2 0.0071 1.5E-07 58.4 4.8 59 1-65 514-577 (935)
265 COG4161 ArtP ABC-type arginine 96.1 0.012 2.6E-07 46.3 5.1 54 1-56 172-225 (242)
266 COG1117 PstB ABC-type phosphat 96.1 0.012 2.6E-07 48.3 5.4 53 1-56 180-232 (253)
267 COG3845 ABC-type uncharacteriz 96.1 0.0071 1.5E-07 55.2 4.4 53 1-55 171-223 (501)
268 KOG0059 Lipid exporter ABCA1 a 96.1 0.01 2.2E-07 59.4 5.9 63 1-69 729-791 (885)
269 COG3842 PotA ABC-type spermidi 96.1 0.0076 1.6E-07 53.5 4.2 54 1-56 167-221 (352)
270 PRK10522 multidrug transporter 96.0 0.0083 1.8E-07 56.8 4.6 50 1-53 480-530 (547)
271 KOG0055 Multidrug/pheromone ex 96.0 0.0072 1.6E-07 61.0 4.3 57 1-65 520-576 (1228)
272 TIGR01271 CFTR_protein cystic 96.0 0.0077 1.7E-07 63.5 4.7 56 1-64 1384-1439(1490)
273 PLN03232 ABC transporter C fam 95.9 0.0097 2.1E-07 62.8 5.0 56 1-64 771-827 (1495)
274 COG1116 TauB ABC-type nitrate/ 95.9 0.0076 1.7E-07 50.5 3.4 45 1-46 161-206 (248)
275 COG5265 ATM1 ABC-type transpor 95.9 0.0076 1.7E-07 54.1 3.4 57 1-65 430-486 (497)
276 PTZ00265 multidrug resistance 95.8 0.01 2.2E-07 62.4 4.7 58 1-64 1389-1451(1466)
277 PRK00635 excinuclease ABC subu 95.8 0.011 2.4E-07 62.4 4.7 54 1-56 843-901 (1809)
278 cd03280 ABC_MutS2 MutS2 homolo 95.7 0.023 4.9E-07 46.5 5.5 51 1-54 121-172 (200)
279 PLN03130 ABC transporter C fam 95.7 0.014 3E-07 61.9 5.1 56 1-64 771-827 (1622)
280 COG4172 ABC-type uncharacteriz 95.7 0.014 3E-07 52.4 4.2 54 1-56 457-511 (534)
281 COG3839 MalK ABC-type sugar tr 95.7 0.011 2.4E-07 52.1 3.6 54 1-56 164-218 (338)
282 COG1129 MglA ABC-type sugar tr 95.6 0.012 2.6E-07 54.4 3.9 54 1-56 432-485 (500)
283 TIGR00957 MRP_assoc_pro multi 95.6 0.014 3E-07 61.8 4.7 57 1-64 791-849 (1522)
284 PRK13409 putative ATPase RIL; 95.6 0.012 2.6E-07 56.2 3.9 68 1-71 484-555 (590)
285 PRK10636 putative ABC transpor 95.6 0.012 2.5E-07 56.9 3.7 51 1-56 461-512 (638)
286 PTZ00265 multidrug resistance 95.5 0.016 3.4E-07 61.0 4.7 44 1-46 610-654 (1466)
287 COG4148 ModC ABC-type molybdat 95.4 0.015 3.2E-07 49.8 3.3 54 1-56 159-213 (352)
288 TIGR01271 CFTR_protein cystic 95.4 0.02 4.4E-07 60.4 5.0 52 1-56 579-631 (1490)
289 PRK11819 putative ABC transpor 95.4 0.02 4.3E-07 54.4 4.4 52 1-56 476-528 (556)
290 TIGR03719 ABC_ABC_ChvD ATP-bin 95.3 0.018 4E-07 54.6 4.1 51 1-56 192-243 (552)
291 PTZ00243 ABC transporter; Prov 95.3 0.024 5.1E-07 60.1 5.1 53 1-56 813-865 (1560)
292 PRK11819 putative ABC transpor 95.2 0.022 4.8E-07 54.1 4.3 51 1-56 194-245 (556)
293 TIGR03719 ABC_ABC_ChvD ATP-bin 95.1 0.025 5.3E-07 53.7 4.4 52 1-56 474-526 (552)
294 PLN03073 ABC transporter F fam 95.1 0.024 5.1E-07 55.4 4.1 51 1-56 658-709 (718)
295 COG3845 ABC-type uncharacteriz 95.1 0.031 6.8E-07 51.1 4.5 54 1-56 434-487 (501)
296 KOG0058 Peptide exporter, ABC 94.9 0.027 5.8E-07 53.8 3.7 52 1-56 635-686 (716)
297 COG0410 LivF ABC-type branched 94.8 0.051 1.1E-06 45.1 4.8 53 2-56 168-221 (237)
298 KOG0056 Heavy metal exporter H 94.7 0.021 4.5E-07 52.5 2.4 57 1-65 705-761 (790)
299 KOG0055 Multidrug/pheromone ex 94.7 0.03 6.5E-07 56.7 3.7 57 1-65 1157-1213(1228)
300 COG1101 PhnK ABC-type uncharac 94.7 0.045 9.7E-07 45.1 4.0 51 1-53 179-230 (263)
301 COG4107 PhnK ABC-type phosphon 94.6 0.052 1.1E-06 43.3 4.1 54 1-56 182-236 (258)
302 COG4175 ProV ABC-type proline/ 94.6 0.052 1.1E-06 47.3 4.5 54 1-56 195-249 (386)
303 TIGR03518 ABC_perm_GldF glidin 94.5 0.57 1.2E-05 39.5 10.7 32 121-152 2-33 (240)
304 KOG0054 Multidrug resistance-a 94.5 0.035 7.5E-07 57.3 3.7 57 1-64 674-730 (1381)
305 PRK15176 Vi polysaccharide exp 94.4 1.4 3.1E-05 37.6 13.0 40 223-262 192-231 (264)
306 PRK11147 ABC transporter ATPas 94.3 0.057 1.2E-06 52.2 4.6 51 1-56 187-238 (635)
307 PRK13409 putative ATPase RIL; 94.1 0.047 1E-06 52.2 3.5 44 1-46 243-286 (590)
308 COG4170 SapD ABC-type antimicr 94.0 0.057 1.2E-06 44.4 3.4 54 1-56 189-243 (330)
309 PLN03073 ABC transporter F fam 94.0 0.065 1.4E-06 52.4 4.4 51 1-56 375-426 (718)
310 cd03241 ABC_RecN RecN ATPase i 93.7 0.053 1.1E-06 46.7 2.8 46 1-49 205-250 (276)
311 KOG0054 Multidrug resistance-a 93.6 0.094 2E-06 54.3 4.7 57 1-65 1306-1362(1381)
312 PRK10636 putative ABC transpor 93.4 0.091 2E-06 50.8 4.1 51 1-56 180-231 (638)
313 PF03379 CcmB: CcmB protein; 93.2 1.2 2.6E-05 36.8 10.0 92 120-217 1-123 (215)
314 TIGR00634 recN DNA repair prot 93.2 0.082 1.8E-06 50.3 3.4 43 1-46 475-517 (563)
315 COG4615 PvdE ABC-type sideroph 92.3 0.28 6.1E-06 44.2 5.2 51 2-55 480-531 (546)
316 COG4525 TauB ABC-type taurine 92.1 0.37 7.9E-06 39.4 5.2 55 1-56 163-219 (259)
317 PRK11147 ABC transporter ATPas 91.7 0.18 3.9E-06 48.7 3.8 47 1-52 471-518 (635)
318 COG0178 UvrA Excinuclease ATPa 91.5 0.18 4E-06 49.1 3.5 59 1-65 856-919 (935)
319 COG4167 SapF ABC-type antimicr 91.4 0.4 8.7E-06 38.7 4.7 54 1-56 180-234 (267)
320 PRK10869 recombination and rep 91.3 0.22 4.7E-06 47.3 3.8 43 1-46 465-507 (553)
321 COG4587 ABC-type uncharacteriz 89.3 3.2 7E-05 34.9 8.5 30 223-252 190-219 (268)
322 cd03285 ABC_MSH2_euk MutS2 hom 89.1 0.65 1.4E-05 38.7 4.5 41 12-55 134-175 (222)
323 cd03243 ABC_MutS_homologs The 89.0 0.81 1.7E-05 37.3 5.0 53 1-56 121-174 (202)
324 COG4674 Uncharacterized ABC-ty 86.4 1 2.2E-05 36.8 3.9 49 5-56 182-230 (249)
325 COG2874 FlaH Predicted ATPases 86.3 1.1 2.3E-05 37.1 4.0 27 4-30 142-168 (235)
326 COG3910 Predicted ATPase [Gene 83.4 1.9 4.2E-05 35.0 4.1 30 1-30 159-188 (233)
327 PRK13830 conjugal transfer pro 81.5 1.9 4.2E-05 43.0 4.4 53 2-55 667-727 (818)
328 PRK07721 fliI flagellum-specif 81.0 2.6 5.7E-05 38.8 4.7 52 1-56 280-338 (438)
329 cd01124 KaiC KaiC is a circadi 78.8 1 2.2E-05 35.8 1.2 43 4-46 114-164 (187)
330 TIGR01190 ccmB heme exporter p 78.3 25 0.00055 29.0 9.3 88 124-217 2-120 (211)
331 PF12698 ABC2_membrane_3: ABC- 77.9 0.71 1.5E-05 39.9 0.0 36 223-258 282-317 (344)
332 PRK04296 thymidine kinase; Pro 77.0 2.7 5.9E-05 33.9 3.2 48 7-56 93-149 (190)
333 PF12051 DUF3533: Protein of u 76.6 13 0.00028 33.6 7.8 36 227-263 328-363 (382)
334 cd03284 ABC_MutS1 MutS1 homolo 75.4 4 8.7E-05 33.7 3.9 49 10-65 132-181 (216)
335 TIGR02788 VirB11 P-type DNA tr 74.8 4.5 9.9E-05 35.4 4.2 47 7-56 230-276 (308)
336 PRK10246 exonuclease subunit S 74.1 5 0.00011 41.3 4.9 30 1-30 988-1017(1047)
337 PRK13695 putative NTPase; Prov 74.0 11 0.00024 29.6 6.0 47 6-55 112-158 (174)
338 cd03283 ABC_MutS-like MutS-lik 71.7 5.8 0.00013 32.3 3.9 31 1-31 118-149 (199)
339 smart00534 MUTSac ATPase domai 71.6 7.3 0.00016 31.2 4.5 50 1-53 91-142 (185)
340 PF12679 ABC2_membrane_2: ABC- 68.6 54 0.0012 27.4 9.5 26 122-147 2-27 (277)
341 PRK06067 flagellar accessory p 68.4 7 0.00015 32.5 3.8 26 7-32 142-167 (234)
342 cd05008 SIS_GlmS_GlmD_1 SIS (S 67.6 4.9 0.00011 29.6 2.5 42 5-46 58-99 (126)
343 cd05014 SIS_Kpsf KpsF-like pro 67.6 4 8.6E-05 30.3 2.0 42 5-46 59-100 (128)
344 TIGR03061 pip_yhgE_Nterm YhgE/ 66.7 9.8 0.00021 29.8 4.1 34 126-159 1-37 (164)
345 COG1511 Predicted membrane pro 64.7 5.5 0.00012 39.6 2.8 62 193-254 658-727 (780)
346 cd01125 repA Hexameric Replica 63.9 12 0.00026 31.2 4.4 31 2-32 130-161 (239)
347 TIGR03880 KaiC_arch_3 KaiC dom 63.8 3.4 7.4E-05 34.1 1.0 41 5-45 129-177 (224)
348 PF00837 T4_deiodinase: Iodoth 63.4 15 0.00032 30.9 4.7 62 7-69 170-235 (237)
349 cd05710 SIS_1 A subgroup of th 62.3 6.3 0.00014 29.1 2.2 43 5-48 59-101 (120)
350 PF01380 SIS: SIS domain SIS d 62.1 7.2 0.00016 28.7 2.5 41 6-46 66-106 (131)
351 COG0488 Uup ATPase components 61.1 14 0.00029 35.1 4.6 51 1-55 184-234 (530)
352 TIGR00439 ftsX putative protei 57.7 30 0.00065 30.3 5.9 41 116-156 9-49 (309)
353 PF06182 ABC2_membrane_6: ABC- 56.8 63 0.0014 26.6 7.6 31 223-253 154-185 (229)
354 KOG2355 Predicted ABC-type tra 55.5 25 0.00054 29.3 4.6 54 1-56 178-232 (291)
355 COG2386 CcmB ABC-type transpor 55.0 1.2E+02 0.0026 25.0 9.2 92 118-215 2-124 (221)
356 PF10766 DUF2592: Protein of u 53.0 45 0.00097 19.5 4.2 21 136-156 4-24 (41)
357 TIGR03127 RuMP_HxlB 6-phospho 53.0 11 0.00024 29.8 2.3 45 5-50 84-128 (179)
358 PRK08533 flagellar accessory p 51.5 24 0.00052 29.4 4.2 44 2-45 135-184 (230)
359 COG1245 Predicted ATPase, RNas 49.9 22 0.00048 33.0 3.9 43 1-45 244-287 (591)
360 TIGR00152 dephospho-CoA kinase 48.2 17 0.00037 29.0 2.7 46 1-46 86-132 (188)
361 cd01131 PilT Pilus retraction 48.1 21 0.00046 28.8 3.3 35 10-46 89-123 (198)
362 TIGR02655 circ_KaiC circadian 47.5 11 0.00025 35.2 1.7 41 5-45 142-190 (484)
363 PRK11026 ftsX cell division AB 47.1 52 0.0011 28.8 5.7 41 116-156 9-49 (309)
364 PRK11382 frlB fructoselysine-6 46.8 15 0.00033 32.5 2.4 44 5-49 104-147 (340)
365 PRK13891 conjugal transfer pro 46.7 53 0.0011 33.2 6.4 49 2-52 702-752 (852)
366 COG4664 FcbT3 TRAP-type mannit 46.7 86 0.0019 28.1 6.8 61 148-211 243-315 (447)
367 PRK08699 DNA polymerase III su 46.5 30 0.00065 30.6 4.1 61 1-71 125-185 (325)
368 TIGR03733 lanti_perm_MutG lant 46.3 1.8E+02 0.0038 24.4 10.3 32 124-156 3-34 (248)
369 cd06844 STAS Sulphate Transpor 45.3 63 0.0014 22.6 5.1 21 47-71 71-91 (100)
370 COG4938 Uncharacterized conser 43.6 34 0.00073 29.8 3.8 29 1-29 273-301 (374)
371 cd01120 RecA-like_NTPases RecA 43.5 37 0.00081 25.5 3.9 24 10-33 116-140 (165)
372 PF03606 DcuC: C4-dicarboxylat 43.5 2.8E+02 0.006 25.9 10.8 82 136-218 280-382 (465)
373 TIGR00416 sms DNA repair prote 42.3 16 0.00035 33.9 1.9 41 6-46 197-245 (454)
374 KOG0030 Myosin essential light 42.3 25 0.00055 27.0 2.6 41 32-84 14-55 (152)
375 PF03969 AFG1_ATPase: AFG1-lik 41.6 33 0.00072 30.8 3.7 35 2-36 140-174 (362)
376 cd07043 STAS_anti-anti-sigma_f 40.2 75 0.0016 21.7 4.8 19 48-70 71-89 (99)
377 COG1245 Predicted ATPase, RNas 39.7 1.1E+02 0.0024 28.7 6.7 67 1-71 486-557 (591)
378 cd07042 STAS_SulP_like_sulfate 39.6 80 0.0017 21.9 4.9 20 48-71 74-93 (107)
379 cd05005 SIS_PHI Hexulose-6-pho 39.1 24 0.00052 27.9 2.2 47 5-52 87-133 (179)
380 COG4619 ABC-type uncharacteriz 37.9 52 0.0011 26.5 3.8 49 1-50 164-212 (223)
381 PRK13937 phosphoheptose isomer 37.9 27 0.00058 28.1 2.3 42 5-46 118-159 (188)
382 PF07109 Mg-por_mtran_C: Magne 36.6 64 0.0014 23.1 3.8 46 25-75 4-52 (97)
383 PRK15482 transcriptional regul 35.5 25 0.00054 30.2 1.9 45 6-51 195-239 (285)
384 TIGR00441 gmhA phosphoheptose 35.1 26 0.00057 27.1 1.8 41 6-46 92-132 (154)
385 PHA02690 hypothetical protein; 34.9 1.5E+02 0.0032 20.3 5.5 37 122-158 54-90 (90)
386 cd07019 S49_SppA_1 Signal pept 34.6 1E+02 0.0022 25.1 5.4 68 2-71 52-123 (211)
387 cd05006 SIS_GmhA Phosphoheptos 34.3 27 0.00058 27.6 1.8 41 6-46 114-154 (177)
388 TIGR02886 spore_II_AA anti-sig 33.8 99 0.0022 21.7 4.6 67 1-71 18-91 (106)
389 TIGR03881 KaiC_arch_4 KaiC dom 33.3 23 0.00049 29.2 1.2 39 7-45 142-188 (229)
390 PRK13873 conjugal transfer ATP 33.1 51 0.0011 33.1 3.9 31 1-31 648-679 (811)
391 PRK11337 DNA-binding transcrip 32.7 33 0.00072 29.5 2.2 41 6-46 200-240 (292)
392 cd07023 S49_Sppa_N_C Signal pe 32.3 1.1E+02 0.0024 24.8 5.2 67 3-71 49-119 (208)
393 COG1485 Predicted ATPase [Gene 31.9 67 0.0015 28.8 3.9 35 2-36 143-177 (367)
394 PF12730 ABC2_membrane_4: ABC- 31.7 2.5E+02 0.0054 21.9 10.1 23 184-206 92-114 (232)
395 cd03282 ABC_MSH4_euk MutS4 hom 31.6 72 0.0016 26.0 3.9 29 2-30 122-151 (204)
396 PF12911 OppC_N: N-terminal TM 31.4 1.3E+02 0.0028 18.5 6.2 36 124-159 5-41 (56)
397 cd01122 GP4d_helicase GP4d_hel 30.2 61 0.0013 27.3 3.5 25 6-30 166-191 (271)
398 COG0497 RecN ATPase involved i 30.1 54 0.0012 31.2 3.2 40 4-46 469-508 (557)
399 PRK14088 dnaA chromosomal repl 29.9 1.6E+02 0.0035 27.2 6.3 51 5-56 212-263 (440)
400 TIGR02858 spore_III_AA stage I 29.5 38 0.00083 29.1 2.1 22 9-31 209-230 (270)
401 PRK13938 phosphoheptose isomer 29.5 38 0.00083 27.5 1.9 42 5-46 125-166 (196)
402 PRK11543 gutQ D-arabinose 5-ph 29.2 40 0.00086 29.4 2.1 42 5-46 101-142 (321)
403 PF01740 STAS: STAS domain; I 28.1 2.2E+02 0.0049 20.2 5.9 66 1-71 19-100 (117)
404 PRK06193 hypothetical protein; 27.7 63 0.0014 26.5 2.9 27 7-33 142-168 (206)
405 PRK13764 ATPase; Provisional 27.6 80 0.0017 30.6 4.0 45 10-56 339-400 (602)
406 cd07041 STAS_RsbR_RsbS_like Su 27.6 1.5E+02 0.0032 21.0 4.6 67 1-71 20-93 (109)
407 cd05007 SIS_Etherase N-acetylm 27.3 51 0.0011 28.0 2.4 50 6-56 131-180 (257)
408 cd03286 ABC_MSH6_euk MutS6 hom 27.3 76 0.0017 26.2 3.4 30 2-31 123-154 (218)
409 cd05796 Ribosomal_P0_like Ribo 27.1 1.9E+02 0.0041 22.6 5.5 61 13-73 69-139 (163)
410 cd00984 DnaB_C DnaB helicase C 26.4 46 0.001 27.5 2.0 26 6-31 148-174 (242)
411 PRK00409 recombination and DNA 26.3 1.3E+02 0.0027 30.3 5.2 48 1-52 420-469 (782)
412 COG0794 GutQ Predicted sugar p 25.7 72 0.0016 26.2 2.9 44 3-46 96-139 (202)
413 cd07018 S49_SppA_67K_type Sign 25.4 2.2E+02 0.0048 23.4 5.9 66 4-71 62-130 (222)
414 PF01740 STAS: STAS domain; I 25.3 1.2E+02 0.0026 21.7 3.9 39 1-41 61-99 (117)
415 COG1737 RpiR Transcriptional r 24.4 52 0.0011 28.3 2.0 42 5-46 189-230 (281)
416 cd05013 SIS_RpiR RpiR-like pro 24.3 99 0.0021 22.5 3.3 40 7-46 74-113 (139)
417 COG3113 Predicted NTP binding 24.2 2E+02 0.0044 20.6 4.5 37 1-39 52-88 (99)
418 TIGR01069 mutS2 MutS2 family p 24.2 89 0.0019 31.2 3.8 35 1-35 415-450 (771)
419 PRK08727 hypothetical protein; 23.9 3E+02 0.0064 22.8 6.4 51 5-56 111-162 (233)
420 PF08645 PNK3P: Polynucleotide 23.8 77 0.0017 24.7 2.7 24 8-31 33-56 (159)
421 COG1196 Smc Chromosome segrega 23.6 1.1E+02 0.0024 32.2 4.4 39 1-42 1101-1139(1163)
422 cd03287 ABC_MSH3_euk MutS3 hom 23.3 1.1E+02 0.0025 25.3 3.7 22 10-31 133-155 (222)
423 cd03281 ABC_MSH5_euk MutS5 hom 23.2 1.1E+02 0.0024 25.0 3.7 31 1-31 121-155 (213)
424 PRK00414 gmhA phosphoheptose i 23.1 63 0.0014 26.1 2.1 41 6-46 124-164 (192)
425 PRK10949 protease 4; Provision 22.8 2E+02 0.0044 28.0 5.7 65 5-71 130-197 (618)
426 TIGR00706 SppA_dom signal pept 22.7 2.3E+02 0.005 23.0 5.4 66 3-71 45-114 (207)
427 cd07022 S49_Sppa_36K_type Sign 22.4 1.9E+02 0.0041 23.6 4.9 64 5-71 59-126 (214)
428 PF15203 TMEM95: TMEM95 family 22.4 43 0.00094 24.9 0.9 31 231-261 65-95 (152)
429 PF09847 DUF2074: Predicted pe 22.1 6.4E+02 0.014 23.4 12.3 44 116-160 246-289 (449)
430 PRK00331 glucosamine--fructose 22.1 64 0.0014 31.1 2.3 44 5-49 348-391 (604)
431 TIGR01135 glmS glucosamine--fr 21.7 68 0.0015 30.9 2.4 44 5-49 350-393 (607)
432 PHA02530 pseT polynucleotide k 20.9 1.3E+02 0.0028 25.7 3.8 39 6-44 189-227 (300)
433 PRK11557 putative DNA-binding 20.7 62 0.0013 27.5 1.7 41 6-46 188-228 (278)
434 PF09664 DUF2399: Protein of u 20.3 1.9E+02 0.0041 22.4 4.2 36 19-56 40-75 (152)
435 COG0505 CarA Carbamoylphosphat 20.1 1.8E+02 0.0038 26.2 4.3 40 11-56 192-231 (368)
No 1
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.3e-53 Score=405.59 Aligned_cols=260 Identities=44% Similarity=0.825 Sum_probs=245.4
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhhCC--------C
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLLL--------H 72 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~~g--------~ 72 (265)
|||.+|..+|+.||+++++||||+|||||||.++|+.||++++|++||+++|+||.|++|+.+++||++.| |
T Consensus 961 LDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~N 1040 (1391)
T KOG0065|consen 961 LDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISDEN 1040 (1391)
T ss_pred ccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998 5
Q ss_pred CC---------------CcchHHHhhcCHHHHHHHHHHHHHhccCCC-CCCccccCCcc--hHHHHHHHHHHHHHHhhcC
Q 039187 73 PS---------------GADFSDIYKRSDLYRRNKMLIEHLSKQAPG-SKDLYFLTQYS--YFTQFMACLWKQWWSYWQN 134 (265)
Q Consensus 73 P~---------------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~Q~~~L~~R~~~~~~R~ 134 (265)
|+ +.|+++.|++|++++++.+.++++.++.+. ..+...+.+|+ +|.|++.+++|++...||+
T Consensus 1041 PA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRs 1120 (1391)
T KOG0065|consen 1041 PAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRS 1120 (1391)
T ss_pred hHHHHHhhcccccccccCccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCC
Confidence 52 358899999999999999999999988887 66667777787 9999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCCCCCcChhhHHHhhhHHHHHHHH-------------------------------
Q 039187 135 PAYTAVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIIS------------------------------- 183 (265)
Q Consensus 135 ~~~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~~~g~l~~~~~~------------------------------- 183 (265)
|.+++.|+++.++.|+++|+.||+++. ++.++++.+|++|+++++
T Consensus 1121 p~y~~ar~~~~i~~gl~iGf~F~~~g~----~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~ 1196 (1391)
T KOG0065|consen 1121 PDYLMARFALTIVAGLFIGFTFWKVGH----NVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSW 1196 (1391)
T ss_pred cHHHHHHHHHHHHHHHhheeeeeecCC----cHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccH
Confidence 999999999999999999999999996 788999999999999987
Q ss_pred --HHHHHHHHHhhHHHHHHHHHHHHHhhccCccccccccee---------------------------------------
Q 039187 184 --SAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFFR--------------------------------------- 222 (265)
Q Consensus 184 --y~la~~~~~lp~~~~~~~i~~~i~y~~~g~~~~~~~~~~--------------------------------------- 222 (265)
|++|..++|+|+.++++++|.+++|+++|+..+++.+++
T Consensus 1197 ~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~ 1276 (1391)
T KOG0065|consen 1197 TPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSF 1276 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999886544
Q ss_pred --eccccccCCCCCCcchhhhhhhcHHHHHHHHHhhhhcCCCCC
Q 039187 223 --LIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLGMRRK 264 (265)
Q Consensus 223 --l~sG~~~~~~~ip~~~~w~~~lsp~~y~~~al~~~ef~~~~~ 264 (265)
+|||+++|.+.||+||.|++|+||+.|.+++++..++++.+.
T Consensus 1277 ~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~v 1320 (1391)
T KOG0065|consen 1277 WNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVEV 1320 (1391)
T ss_pred HHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCCce
Confidence 999999999999999999999999999999999999998763
No 2
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=4.4e-46 Score=375.99 Aligned_cols=263 Identities=53% Similarity=1.036 Sum_probs=231.2
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhhC-C--------
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLL-L-------- 71 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~~-g-------- 71 (265)
||+.++.++++.|+++++.|+|||+++|||+.++++.||++++|++||+++|+||++.+++++++||+++ |
T Consensus 1050 LD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~ 1129 (1470)
T PLN03140 1050 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKY 1129 (1470)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCC
Confidence 8999999999999999999999999999999999999999999998799999999988889999999997 4
Q ss_pred CCCC---------------cchHHHhhcCHHHHHHHHHHHHHhccCCCCCCccccCCcc--hHHHHHHHHHHHHHHhhcC
Q 039187 72 HPSG---------------ADFSDIYKRSDLYRRNKMLIEHLSKQAPGSKDLYFLTQYS--YFTQFMACLWKQWWSYWQN 134 (265)
Q Consensus 72 ~P~~---------------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Q~~~L~~R~~~~~~R~ 134 (265)
||++ .|+++.|++|+++++..+.+++...+.+...+...+.+++ ++.|++.|++|+++..|||
T Consensus 1130 NPAd~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~ 1209 (1470)
T PLN03140 1130 NPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRS 1209 (1470)
T ss_pred CchhhhhhhhcccccccccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCC
Confidence 4421 2678889999988888777776655443333322334454 9999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCCCCCcChhhHHHhhhHHHHHHHH-------------------------------
Q 039187 135 PAYTAVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIIS------------------------------- 183 (265)
Q Consensus 135 ~~~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~~~g~l~~~~~~------------------------------- 183 (265)
|.+..+++++.+++|+++|++|++++++.. ++.+++++.|++|+.+++
T Consensus 1210 p~~~~~r~~~~i~~al~~G~~f~~~~~~~~-~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~ 1288 (1470)
T PLN03140 1210 PDYNLVRFFFTLAAALMVGTIFWKVGTKRS-NANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSA 1288 (1470)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhhCCCCCcc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCH
Confidence 999999999999999999999999998654 457888888888766654
Q ss_pred --HHHHHHHHHhhHHHHHHHHHHHHHhhccCccccccccee---------------------------------------
Q 039187 184 --SAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFFR--------------------------------------- 222 (265)
Q Consensus 184 --y~la~~~~~lp~~~~~~~i~~~i~y~~~g~~~~~~~~~~--------------------------------------- 222 (265)
|++|++++|+|+.++++++|.+++|||+|++.+++.|++
T Consensus 1289 ~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~ 1368 (1470)
T PLN03140 1289 LPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGL 1368 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988887654
Q ss_pred --eccccccCCCCCCcchhhhhhhcHHHHHHHHHhhhhcCCCCC
Q 039187 223 --LIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLGMRRK 264 (265)
Q Consensus 223 --l~sG~~~~~~~ip~~~~w~~~lsp~~y~~~al~~~ef~~~~~ 264 (265)
+|+||++|.++||+||+|++|+||++|++++++.|||+|.++
T Consensus 1369 ~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~ 1412 (1470)
T PLN03140 1369 FNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVED 1412 (1470)
T ss_pred HHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCC
Confidence 999999999999999999999999999999999999998753
No 3
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.7e-45 Score=341.11 Aligned_cols=252 Identities=28% Similarity=0.446 Sum_probs=210.9
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhhCC--CCCCcch
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLLL--HPSGADF 78 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~~g--~P~~~~~ 78 (265)
|||.+|.++++.||++|++|+|||+|||||++++|++||++++|++ |+++|+|++ +++.+||+++| ||...|.
T Consensus 201 LDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~G~~----~~~~~ff~~~G~~~P~~~Np 275 (613)
T KOG0061|consen 201 LDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYSGSP----RELLEFFSSLGFPCPELENP 275 (613)
T ss_pred cchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEecCH----HHHHHHHHhCCCCCCCcCCh
Confidence 8999999999999999999999999999999999999999999998 899999999 99999999999 8888888
Q ss_pred HHHhhc-----CH--HHHHHHH---HHHHHhccC-----------CCCCCcccc--CCcchHHHHHHHHHHHHHHhhcCh
Q 039187 79 SDIYKR-----SD--LYRRNKM---LIEHLSKQA-----------PGSKDLYFL--TQYSYFTQFMACLWKQWWSYWQNP 135 (265)
Q Consensus 79 ~~~~~~-----s~--~~~~~~~---~~~~~~~~~-----------~~~~~~~~~--~~~~~~~Q~~~L~~R~~~~~~R~~ 135 (265)
+|.+.+ +. ...+..+ ..+..+... ........+ ...+||.|+..|++|.+++.+|++
T Consensus 276 adf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~L~~R~~~~~~R~~ 355 (613)
T KOG0061|consen 276 ADFLLDLLSVDSGTRELEEAVRIAKLINKFSQTDNLKKTLEALEKSLSTSKKVEIGTSPSWWTQFKILLKRSLKNIRRDP 355 (613)
T ss_pred HHHHHHHHccCCCchhHHhHHHHHHHhhhccccchhhhhHHHHhhhcccccccccccCCcHHHHHHHHHHHHhHHHhhcH
Confidence 887765 11 1111111 111111000 000000001 122399999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCCcChhhHHHhhhHHHHHHHH--------------------------------
Q 039187 136 AYTAVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIIS-------------------------------- 183 (265)
Q Consensus 136 ~~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~~~g~l~~~~~~-------------------------------- 183 (265)
.+...++++.+++++++|++|++++.+ ..+++++.|++++.+.+
T Consensus 356 ~~~~~r~~~~~~~~~~lg~~~~~~~~~----~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s 431 (613)
T KOG0061|consen 356 SLLLLRLIQSLVTGLLLGLLYLNLGND----AKGIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLS 431 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCc----hHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHH
Confidence 999999999999999999999999774 45666888776665554
Q ss_pred -HHHHHHHHHhhHHHHHHHHHHHHHhhccCccccccccee----------------------------------------
Q 039187 184 -SAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFFR---------------------------------------- 222 (265)
Q Consensus 184 -y~la~~~~~lp~~~~~~~i~~~i~y~~~g~~~~~~~~~~---------------------------------------- 222 (265)
|++|++++++|..++.+++|++++|||+|++++...|+.
T Consensus 432 ~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f 511 (613)
T KOG0061|consen 432 SYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPF 511 (613)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHH
Confidence 899999999999999999999999999999999887654
Q ss_pred -eccccccCCCCCCcchhhhhhhcHHHHHHHHHhhhhcCC
Q 039187 223 -LIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLGM 261 (265)
Q Consensus 223 -l~sG~~~~~~~ip~~~~w~~~lsp~~y~~~al~~~ef~~ 261 (265)
+++|++++.+++|.||+|++|+|++||++|+++.|||.+
T Consensus 512 ~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~ 551 (613)
T KOG0061|consen 512 LLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSG 551 (613)
T ss_pred HHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 899999999999999999999999999999999999996
No 4
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=5.5e-44 Score=361.46 Aligned_cols=254 Identities=27% Similarity=0.490 Sum_probs=219.4
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhhCC--CCCC--
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLLL--HPSG-- 75 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~~g--~P~~-- 75 (265)
||+.++.++++.|+++++ .|+|||+++|||+.+++++||++++|++ |+++|+||+ +++.+||+++| ||..
T Consensus 240 LD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~-G~iv~~G~~----~~~~~yF~~lG~~~p~~~n 314 (1394)
T TIGR00956 240 LDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYE-GYQIYFGPA----DKAKQYFEKMGFKCPDRQT 314 (1394)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeC-CeEEEECCH----HHHHHHHHHcCCCCCCCCC
Confidence 899999999999999998 5999999999999999999999999998 999999999 99999999999 5522
Q ss_pred ----------------------------cchHHHhhcCHHHHHHHHHHHHHhccC---------------CCCCCccccC
Q 039187 76 ----------------------------ADFSDIYKRSDLYRRNKMLIEHLSKQA---------------PGSKDLYFLT 112 (265)
Q Consensus 76 ----------------------------~~~~~~~~~s~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~ 112 (265)
.++++.|++|+.+++..+.++...++. ..++.....+
T Consensus 315 ~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (1394)
T TIGR00956 315 TADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSS 394 (1394)
T ss_pred hHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCC
Confidence 135566777777666655554322110 0011111222
Q ss_pred Ccc--hHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCcChhhHHHhhhHHHHHHHH-------
Q 039187 113 QYS--YFTQFMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIIS------- 183 (265)
Q Consensus 113 ~~~--~~~Q~~~L~~R~~~~~~R~~~~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~~~g~l~~~~~~------- 183 (265)
+++ +++|+++|++|++++.+|||.++.+++++.+++|+++|++|+++++ ++.+++++.|++|+++++
T Consensus 395 ~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~----~~~~~~~r~g~lf~~~~~~~~~~~~ 470 (1394)
T TIGR00956 395 PYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK----NTSDFYSRGGALFFAILFNAFSSLL 470 (1394)
T ss_pred CCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC----CchhHHHHHHHHHHHHHHHHHHHHH
Confidence 343 8999999999999999999999999999999999999999999988 557899999999988775
Q ss_pred -------------------------HHHHHHHHHhhHHHHHHHHHHHHHhhccCccccccccee----------------
Q 039187 184 -------------------------SAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFFR---------------- 222 (265)
Q Consensus 184 -------------------------y~la~~~~~lp~~~~~~~i~~~i~y~~~g~~~~~~~~~~---------------- 222 (265)
|++|++++++|..++.+++|++|+|||+|++++++.|+.
T Consensus 471 ~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~ 550 (1394)
T TIGR00956 471 EIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLF 550 (1394)
T ss_pred HHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987754
Q ss_pred -------------------------eccccccCCCCCCcchhhhhhhcHHHHHHHHHhhhhcCCCC
Q 039187 223 -------------------------LIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLGMRR 263 (265)
Q Consensus 223 -------------------------l~sG~~~~~~~ip~~~~w~~~lsp~~y~~~al~~~ef~~~~ 263 (265)
+++||++|.++||+||+|++|+||++|++||++.|||++.+
T Consensus 551 ~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~ 616 (1394)
T TIGR00956 551 RSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRR 616 (1394)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCc
Confidence 99999999999999999999999999999999999998754
No 5
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.4e-44 Score=346.98 Aligned_cols=255 Identities=26% Similarity=0.501 Sum_probs=230.8
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhhCC--CCC---
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLLL--HPS--- 74 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~~g--~P~--- 74 (265)
|||.|+.++++.||++++ .+.|+++++|||+.+++++||+|++|.+ |+++|+||+ +++++||+++| ||.
T Consensus 291 LDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e-G~~iy~Gp~----d~~~~yFe~~Gf~cP~r~~ 365 (1391)
T KOG0065|consen 291 LDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSE-GYQIYQGPR----DEVLPYFEDMGFKCPPRKG 365 (1391)
T ss_pred ccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeec-cceEEeccH----HHHHHHHHhcCccCCCccC
Confidence 899999999999999999 7999999999999999999999999998 999999999 99999999999 661
Q ss_pred -----------------------------CcchHHHhhcCHHHHHHHHHHHHHhccCCCCCCccccCCcc--hHHHHHHH
Q 039187 75 -----------------------------GADFSDIYKRSDLYRRNKMLIEHLSKQAPGSKDLYFLTQYS--YFTQFMAC 123 (265)
Q Consensus 75 -----------------------------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Q~~~L 123 (265)
..+++++|.+++.+++....++........++.....++|. +|.|++++
T Consensus 366 ~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c 445 (1391)
T KOG0065|consen 366 TADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKAC 445 (1391)
T ss_pred HHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHH
Confidence 13677788888888888777766555554555555566666 99999999
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCcChhhHHHhhhHHHHHHHH--------------------
Q 039187 124 LWKQWWSYWQNPAYTAVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIIS-------------------- 183 (265)
Q Consensus 124 ~~R~~~~~~R~~~~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~~~g~l~~~~~~-------------------- 183 (265)
+.|+++.++||..++....++.+++++++|++|++.+. . +..+.+.+.|++|++.++
T Consensus 446 ~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~-t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~ 522 (1391)
T KOG0065|consen 446 TIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--S-TTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFY 522 (1391)
T ss_pred HHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--c-ccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHH
Confidence 99999999999999999999999999999999999983 1 567888999999888886
Q ss_pred ------------HHHHHHHHHhhHHHHHHHHHHHHHhhccCccccccccee-----------------------------
Q 039187 184 ------------SAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFFR----------------------------- 222 (265)
Q Consensus 184 ------------y~la~~~~~lp~~~~~~~i~~~i~y~~~g~~~~~~~~~~----------------------------- 222 (265)
|.++.++.++|..++.+++|.+|+||++|+++++++||.
T Consensus 523 Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~A 602 (1391)
T KOG0065|consen 523 KHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIA 602 (1391)
T ss_pred HhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 899999999999999999999999999999999999875
Q ss_pred ------------eccccccCCCCCCcchhhhhhhcHHHHHHHHHhhhhcCCCC
Q 039187 223 ------------LIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLGMRR 263 (265)
Q Consensus 223 ------------l~sG~~~~~~~ip~~~~w~~~lsp~~y~~~al~~~ef~~~~ 263 (265)
+++||++|.++||+||+|++|+||+.|++|++++|||+++.
T Consensus 603 n~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~ 655 (1391)
T KOG0065|consen 603 NLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRR 655 (1391)
T ss_pred hhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhccc
Confidence 89999999999999999999999999999999999999864
No 6
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=2.1e-43 Score=334.23 Aligned_cols=254 Identities=28% Similarity=0.471 Sum_probs=210.0
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhhCC--CCCCcch
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLLL--HPSGADF 78 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~~g--~P~~~~~ 78 (265)
||+.++.++++.|++++++|+|||+++|||+.+++++||++++|++ |+++|+||+ +++.+||+++| ||...+.
T Consensus 197 LD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~-G~~v~~G~~----~~~~~~f~~~g~~~p~~~n~ 271 (617)
T TIGR00955 197 LDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAE-GRVAYLGSP----DQAVPFFSDLGHPCPENYNP 271 (617)
T ss_pred hhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeC-CeEEEECCH----HHHHHHHHHcCCCCCCCCCh
Confidence 7999999999999999988999999999999999999999999997 999999999 99999999999 7766555
Q ss_pred HHHhhc-------------------------CHHHHHHHHHHHHHhccCCC-CCC--ccccCCcc--hHHHHHHHHHHHH
Q 039187 79 SDIYKR-------------------------SDLYRRNKMLIEHLSKQAPG-SKD--LYFLTQYS--YFTQFMACLWKQW 128 (265)
Q Consensus 79 ~~~~~~-------------------------s~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~--~~~Q~~~L~~R~~ 128 (265)
+|.+.+ ++.+++..+..+....+.+. ..+ .....++. ++.|+.+|++|.+
T Consensus 272 ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~ 351 (617)
T TIGR00955 272 ADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSW 351 (617)
T ss_pred HHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHHHH
Confidence 554432 11111111111110100000 001 01112232 9999999999999
Q ss_pred HHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCcChhhHHHhhhHHHHHHHH-------------------------
Q 039187 129 WSYWQNPAYTAVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIIS------------------------- 183 (265)
Q Consensus 129 ~~~~R~~~~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~~~g~l~~~~~~------------------------- 183 (265)
+..+|||.++..++++.+++++++|++|++.+. ++.+++++.|++|+.+++
T Consensus 352 ~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~----~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~ 427 (617)
T TIGR00955 352 LSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL----TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETR 427 (617)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999987 567888888887777653
Q ss_pred --------HHHHHHHHHhhHHHHHHHHHHHHHhhccCccccccccee---------------------------------
Q 039187 184 --------SAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFFR--------------------------------- 222 (265)
Q Consensus 184 --------y~la~~~~~lp~~~~~~~i~~~i~y~~~g~~~~~~~~~~--------------------------------- 222 (265)
|++|+.++++|..++.+++|++++|||+|++++++.|+.
T Consensus 428 ~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~ 507 (617)
T TIGR00955 428 SGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVG 507 (617)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHH
Confidence 999999999999999999999999999999999887644
Q ss_pred --------eccccccCCCCCCcchhhhhhhcHHHHHHHHHhhhhcCCCC
Q 039187 223 --------LIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLGMRR 263 (265)
Q Consensus 223 --------l~sG~~~~~~~ip~~~~w~~~lsp~~y~~~al~~~ef~~~~ 263 (265)
+|+|++++.++||+||+|++|+||++|++++++.|||.+..
T Consensus 508 ~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~ 556 (617)
T TIGR00955 508 PPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVD 556 (617)
T ss_pred HHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCc
Confidence 89999999999999999999999999999999999998754
No 7
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2e-43 Score=356.78 Aligned_cols=256 Identities=22% Similarity=0.408 Sum_probs=209.8
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhhCC--CCCCcc
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLLL--HPSGAD 77 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~~g--~P~~~~ 77 (265)
||+.++.++++.|+++++ .|+|||+++|||+.+++++||+|++|++ |+++|+||+ +++.+||+++| ||...+
T Consensus 367 LDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~-G~ivy~G~~----~~~~~yF~~lGf~cP~~~n 441 (1470)
T PLN03140 367 LDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE-GQIVYQGPR----DHILEFFESCGFKCPERKG 441 (1470)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeC-ceEEEeCCH----HHHHHHHHHcCCCCCCCCC
Confidence 899999999999999998 6999999999999999999999999998 999999999 99999999999 885554
Q ss_pred hHHHhh--------------------------------cCHHHHHHHHHHHHHhccCCCCCCccccCCcc--hHHHHHHH
Q 039187 78 FSDIYK--------------------------------RSDLYRRNKMLIEHLSKQAPGSKDLYFLTQYS--YFTQFMAC 123 (265)
Q Consensus 78 ~~~~~~--------------------------------~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Q~~~L 123 (265)
.+|... +|+.+++..+.++........++.....++|+ ++.|++.+
T Consensus 442 ~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~ 521 (1470)
T PLN03140 442 TADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKAC 521 (1470)
T ss_pred hHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHH
Confidence 444332 22222222211111000000111111223455 89999999
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCcChhhHHHhhhHHHHHHHH--------------------
Q 039187 124 LWKQWWSYWQNPAYTAVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIIS-------------------- 183 (265)
Q Consensus 124 ~~R~~~~~~R~~~~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~~~g~l~~~~~~-------------------- 183 (265)
++|+++..+||+..+.+++++.+++|+++|++|++++.+.. +..+.+.+.|.+|+++++
T Consensus 522 ~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~-~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ 600 (1470)
T PLN03140 522 WDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTR-NEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFY 600 (1470)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhH
Confidence 99999999999999999999999999999999999976543 334556677777766554
Q ss_pred ------------HHHHHHHHHhhHHHHHHHHHHHHHhhccCccccccccee-----------------------------
Q 039187 184 ------------SAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFFR----------------------------- 222 (265)
Q Consensus 184 ------------y~la~~~~~lp~~~~~~~i~~~i~y~~~g~~~~~~~~~~----------------------------- 222 (265)
|++|++++++|..++.+++|++|+|||+|++++++.||.
T Consensus 601 ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A 680 (1470)
T PLN03140 601 KQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIA 680 (1470)
T ss_pred HhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 999999999999999999999999999999999998764
Q ss_pred ------------eccccccCCCCCCcchhhhhhhcHHHHHHHHHhhhhcCCC
Q 039187 223 ------------LIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLGMR 262 (265)
Q Consensus 223 ------------l~sG~~~~~~~ip~~~~w~~~lsp~~y~~~al~~~ef~~~ 262 (265)
+|+||++|.++||+||+|++|+||++|++||++.|||.+.
T Consensus 681 ~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~ 732 (1470)
T PLN03140 681 NTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAP 732 (1470)
T ss_pred HHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCc
Confidence 9999999999999999999999999999999999999653
No 8
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=6.6e-43 Score=353.62 Aligned_cols=259 Identities=31% Similarity=0.551 Sum_probs=220.2
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhhCC---CCCCc-
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLLL---HPSGA- 76 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~~g---~P~~~- 76 (265)
||+.++.++++.|++++++|+|||+++|||+..+++.||++++|++||+++|+|+++.+++++.+||++.| ||...
T Consensus 933 LD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~N 1012 (1394)
T TIGR00956 933 LDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDAN 1012 (1394)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhcCCCCCCCCCC
Confidence 79999999999999999899999999999998899999999999996699999999888889999999998 56443
Q ss_pred -------------------chHHHhhcCHHHHHHHHHHHHHhccCCCCCC---ccccCCcc--hHHHHHHHHHHHHHHhh
Q 039187 77 -------------------DFSDIYKRSDLYRRNKMLIEHLSKQAPGSKD---LYFLTQYS--YFTQFMACLWKQWWSYW 132 (265)
Q Consensus 77 -------------------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~Q~~~L~~R~~~~~~ 132 (265)
++.+.|++|+++++..+.+++.......... .....+++ ++.|+++|++|++++.|
T Consensus 1013 pAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~ 1092 (1394)
T TIGR00956 1013 PAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYW 1092 (1394)
T ss_pred HHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHh
Confidence 3445566666666555555444332111111 11112343 99999999999999999
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCcChhhHHHhhhHHHHHHHH-----------------------------
Q 039187 133 QNPAYTAVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIIS----------------------------- 183 (265)
Q Consensus 133 R~~~~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~~~g~l~~~~~~----------------------------- 183 (265)
|||.++..++++.+++|+++|++|+++++ ++.+++++.|++|+.+.+
T Consensus 1093 R~~~~~~~r~~~~i~~~l~~G~~f~~~~~----~~~~i~~~~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y 1168 (1394)
T TIGR00956 1093 RTPDYLYSKFFLTIFAALFIGFTFFKVGT----SLQGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTF 1168 (1394)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999988 567899999988876654
Q ss_pred ----HHHHHHHHHhhHHHHHHHHHHHHHhhccCccccccc-------cee------------------------------
Q 039187 184 ----SAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASK-------FFR------------------------------ 222 (265)
Q Consensus 184 ----y~la~~~~~lp~~~~~~~i~~~i~y~~~g~~~~~~~-------~~~------------------------------ 222 (265)
|++|++++|+|..++.+++|.+++||++|++.++.. |++
T Consensus 1169 ~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~ 1248 (1394)
T TIGR00956 1169 SWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAA 1248 (1394)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHH
Confidence 999999999999999999999999999999987654 322
Q ss_pred -----------eccccccCCCCCCcchhhhhhhcHHHHHHHHHhhhhcCCCC
Q 039187 223 -----------LIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLGMRR 263 (265)
Q Consensus 223 -----------l~sG~~~~~~~ip~~~~w~~~lsp~~y~~~al~~~ef~~~~ 263 (265)
+|||++++.++||+||+|++|+||++|++++++.+||+|.+
T Consensus 1249 ~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~ 1300 (1394)
T TIGR00956 1249 VLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVP 1300 (1394)
T ss_pred HHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCe
Confidence 99999999999999999999999999999999999999875
No 9
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=4.3e-42 Score=325.80 Aligned_cols=248 Identities=20% Similarity=0.316 Sum_probs=203.3
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhhCC--CCCCcch
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLLL--HPSGADF 78 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~~g--~P~~~~~ 78 (265)
||+.++.++++.|++++++|+|||+++|||+.++++.||++++|++ |+++|.|++ +++.+||+++| ||...|.
T Consensus 237 LD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~-G~iv~~G~~----~~~~~~f~~~G~~~P~~~Np 311 (659)
T PLN03211 237 LDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSE-GRCLFFGKG----SDAMAYFESVGFSPSFPMNP 311 (659)
T ss_pred cCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecC-CcEEEECCH----HHHHHHHHHCCCCCCCCCCH
Confidence 7999999999999999988999999999999999999999999997 999999999 99999999999 8877777
Q ss_pred HHHhhcCH------------HHHHH----------------HHHHHHHhccCCC--------CCCc-cccCCc--chHHH
Q 039187 79 SDIYKRSD------------LYRRN----------------KMLIEHLSKQAPG--------SKDL-YFLTQY--SYFTQ 119 (265)
Q Consensus 79 ~~~~~~s~------------~~~~~----------------~~~~~~~~~~~~~--------~~~~-~~~~~~--~~~~Q 119 (265)
+|.+.+.. ..... .+..+........ .+.. ..+..+ +|+.|
T Consensus 312 ADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q 391 (659)
T PLN03211 312 ADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQ 391 (659)
T ss_pred HHHHHHHcCccccCCCccccccchHHHHHHHHHHhhccHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHH
Confidence 66643210 00000 0000000000000 0000 011112 28999
Q ss_pred HHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCcChhhHHHhhhHHHHHHHH----------------
Q 039187 120 FMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIIS---------------- 183 (265)
Q Consensus 120 ~~~L~~R~~~~~~R~~~~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~~~g~l~~~~~~---------------- 183 (265)
+.+|++|++++ +||+.+..+++++.+++|+++|++|++++ ..+++++.|++|+.+++
T Consensus 392 ~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~------~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~e 464 (659)
T PLN03211 392 FSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD------FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQE 464 (659)
T ss_pred HHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998 79999999999999999999999999874 35789999999887554
Q ss_pred -----------------HHHHHHHHHhhHHHHHHHHHHHHHhhccCccccccccee------------------------
Q 039187 184 -----------------SAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFFR------------------------ 222 (265)
Q Consensus 184 -----------------y~la~~~~~lp~~~~~~~i~~~i~y~~~g~~~~~~~~~~------------------------ 222 (265)
|++|++++|+|..++.+++|++|+|||+|++++++.|+.
T Consensus 465 r~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~ 544 (659)
T PLN03211 465 RAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIM 544 (659)
T ss_pred hHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999887754
Q ss_pred -----------------eccccccCCCCCCcchhhhhhhcHHHHHHHHHhhhhcCCC
Q 039187 223 -----------------LIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLGMR 262 (265)
Q Consensus 223 -----------------l~sG~~~~~~~ip~~~~w~~~lsp~~y~~~al~~~ef~~~ 262 (265)
+||||+++ +||+||+|++|+||++|++|+++.|||++.
T Consensus 545 ~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~ 599 (659)
T PLN03211 545 DAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEG 599 (659)
T ss_pred CHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCc
Confidence 99999997 899999999999999999999999999864
No 10
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.58 E-value=1.3e-15 Score=125.11 Aligned_cols=137 Identities=22% Similarity=0.436 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHhhcChhHH-HHHHHHHHHHHHHHHHHhcCCCCCCCcChhhHHHhhhHHHHHHHH-------------
Q 039187 118 TQFMACLWKQWWSYWQNPAYT-AVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIIS------------- 183 (265)
Q Consensus 118 ~Q~~~L~~R~~~~~~R~~~~~-~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~~~g~l~~~~~~------------- 183 (265)
+|++.+++|++++.+|||... ...++.+++.++++|.++.++++.. .++ ++.+.++..+..
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQ----DGF-NRPGLIFGSIIFSFFSSISGSSISF 75 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhcccccc----ccc-ccceeeehhhHHhhhhhcccchhhh
Confidence 599999999999999999888 9999999999999999999887322 222 333332222221
Q ss_pred --------------------HHHHHHHHHhhHHHHHHHHHHHHHhhccCcccc-ccccee--------------------
Q 039187 184 --------------------SAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRT-ASKFFR-------------------- 222 (265)
Q Consensus 184 --------------------y~la~~~~~lp~~~~~~~i~~~i~y~~~g~~~~-~~~~~~-------------------- 222 (265)
|.++|.+.+++..++.++++..+.+++.|++.+ ...++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~ 155 (210)
T PF01061_consen 76 ERERGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFESFFLFLLILLLSILCSSGLGLLLAALF 155 (210)
T ss_pred hhhccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccccchheecccccccccccccccccccch
Confidence 999999999999999999999999999998886 211111
Q ss_pred ------------------eccccccCCCCCCcchhhhhhhcHHHHHHHHHhhhhc
Q 039187 223 ------------------LIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRL 259 (265)
Q Consensus 223 ------------------l~sG~~~~~~~ip~~~~w~~~lsp~~y~~~al~~~ef 259 (265)
++||.+.|.+.+|+|++|+.++||++|++|++..++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 156 PSFRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 8899999999999999999999999999999998876
No 11
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.96 E-value=4.3e-09 Score=88.51 Aligned_cols=135 Identities=8% Similarity=0.031 Sum_probs=98.2
Q ss_pred HHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCC---CCcChhhHHHhhhHHHHHHHH-------------------
Q 039187 126 KQWWSYWQNPAYTAVKFFFTTFTAVLLGSLSWDLGGR---HDQKSQDLFNATGSMFTAIIS------------------- 183 (265)
Q Consensus 126 R~~~~~~R~~~~~~~~l~~~~~~~ll~g~~f~~~~~~---~~~~~~~~~~~~g~l~~~~~~------------------- 183 (265)
|+++...|||......+++|++..++++.++.+.-.+ +.+.....+...|.+.+....
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~ 80 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFFSGISVIWDRQFGFLK 80 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCHHH
Confidence 7788899999999999999999999999988654211 110111111222322221111
Q ss_pred -----------HHHHHHHHHhhHHHHHHHHHHHHHhhccCccccccccee------------------------------
Q 039187 184 -----------SAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFFR------------------------------ 222 (265)
Q Consensus 184 -----------y~la~~~~~lp~~~~~~~i~~~i~y~~~g~~~~~~~~~~------------------------------ 222 (265)
|+++|.+.+++..+++.+++..+.+++.+.+........
T Consensus 81 ~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~~~~~i 160 (236)
T TIGR01247 81 EILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKPSGVIPTLVLAFIVGVALSGLGVAIAARMDSMEGFQII 160 (236)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 899999999999999999999988887665543211100
Q ss_pred ---------eccccccCCCCCCcchhhhhhhcHHHHHHHHHhhhhcC
Q 039187 223 ---------LIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLG 260 (265)
Q Consensus 223 ---------l~sG~~~~~~~ip~~~~w~~~lsp~~y~~~al~~~ef~ 260 (265)
++||.+.|.+.+|+|++|+.+++|.+|+.|++-....+
T Consensus 161 ~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~~ 207 (236)
T TIGR01247 161 MSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLAG 207 (236)
T ss_pred HHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHhC
Confidence 88999999999999999999999999999997654444
No 12
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=98.85 E-value=3.7e-08 Score=83.83 Aligned_cols=140 Identities=13% Similarity=0.102 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHhhcC-hhHHHHHHHHHHHHHHHHHHHhcCCCCCCCcChhhHHH--hhhHHHHHHHH------------
Q 039187 119 QFMACLWKQWWSYWQN-PAYTAVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFN--ATGSMFTAIIS------------ 183 (265)
Q Consensus 119 Q~~~L~~R~~~~~~R~-~~~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~--~~g~l~~~~~~------------ 183 (265)
+...+++|++++.+|+ |..+...++++++.-+++|..+....++.. .. +..+ ..|.+.+++..
T Consensus 6 ~~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~-g~-~y~~f~~pg~l~~~~~~~~~~~~~~~~~~ 83 (253)
T TIGR01291 6 NWAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVD-GV-SYAAFLAAGMVATSAMTASTFETIYATFA 83 (253)
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccC-CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567789999999999 999999999999999999999875422111 11 1111 11322221111
Q ss_pred --------------------HHHHHHHHHhhHHHHHHHHHHHHHhhccCcccccccce--e-------------------
Q 039187 184 --------------------SAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFF--R------------------- 222 (265)
Q Consensus 184 --------------------y~la~~~~~lp~~~~~~~i~~~i~y~~~g~~~~~~~~~--~------------------- 222 (265)
++++|.+.+....+++.++...+.+.+ |..+...... .
T Consensus 84 ~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~~-g~~~~~~~l~~~~~~ll~~l~~~~lg~~~a~~ 162 (253)
T TIGR01291 84 RMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVTATL-GYIEWWSLIYILPVIALTGLAFASLSMLVAAL 162 (253)
T ss_pred HHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999888877777777665555443 3333221110 0
Q ss_pred -------------------eccccccCCCCCCcchhhhhhhcHHHHHHHHHhhhhcCC
Q 039187 223 -------------------LIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLGM 261 (265)
Q Consensus 223 -------------------l~sG~~~~~~~ip~~~~w~~~lsp~~y~~~al~~~ef~~ 261 (265)
++||.+.|.+.+|.|++++.+++|++|+.|++-...+++
T Consensus 163 ~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~~~g~ 220 (253)
T TIGR01291 163 APSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPVMLGG 220 (253)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHHHhCC
Confidence 789999999999999999999999999999976665544
No 13
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=98.78 E-value=9.8e-08 Score=81.20 Aligned_cols=140 Identities=9% Similarity=0.105 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCC----CCcC--hhhHHHhhhHHHHHHHH-------
Q 039187 117 FTQFMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGSLSWDLGGR----HDQK--SQDLFNATGSMFTAIIS------- 183 (265)
Q Consensus 117 ~~Q~~~L~~R~~~~~~R~~~~~~~~l~~~~~~~ll~g~~f~~~~~~----~~~~--~~~~~~~~g~l~~~~~~------- 183 (265)
++++.++++|+++...|||..+...++++++..++++.+|...-+. +.++ .-..+...|.+.+...+
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~~~ 80 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQSSL 80 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3678999999999999999999999999999999999999653110 0001 11122223332222211
Q ss_pred -----------------------HHHHHHHHHhhHHHHHHHHHHHHHhhccCccccccccee------------------
Q 039187 184 -----------------------SAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFFR------------------ 222 (265)
Q Consensus 184 -----------------------y~la~~~~~lp~~~~~~~i~~~i~y~~~g~~~~~~~~~~------------------ 222 (265)
+.++|.+......+++.++...+.+.. |.+.+...+..
T Consensus 81 ~~~~~r~~g~~~~l~~~p~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~-g~~~~~~~~l~~~~~~~l~~~~~~~lgl~ 159 (253)
T TIGR03861 81 SMVYDREMGSMRVLLTSPLPRPFLLFCKLLASALISLLQVYAFLAIAALV-GVQPPVWGYVSVLPALVLVAFMLGALGLA 159 (253)
T ss_pred HhHHhHhcCHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999888888877666655433 54433221110
Q ss_pred -----------------------eccccccCCCCC---CcchhhhhhhcHHHHHHHHHhhh
Q 039187 223 -----------------------LIPGFMIPGPRI---PIRWRWYYWANPIAWTLYGLIAP 257 (265)
Q Consensus 223 -----------------------l~sG~~~~~~~i---p~~~~w~~~lsp~~y~~~al~~~ 257 (265)
++||.+.|.+.+ |+|++|+.++||+.|..|++-..
T Consensus 160 la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~ 220 (253)
T TIGR03861 160 LSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRFA 220 (253)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHHH
Confidence 778999898766 88999999999999999988543
No 14
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=98.77 E-value=9e-08 Score=80.35 Aligned_cols=124 Identities=20% Similarity=0.215 Sum_probs=88.4
Q ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCcChhhHHH-hhhHHHHHHHH---------------------------
Q 039187 132 WQNPAYTAVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFN-ATGSMFTAIIS--------------------------- 183 (265)
Q Consensus 132 ~R~~~~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~-~~g~l~~~~~~--------------------------- 183 (265)
+|||......+.+++++-++++.++.+... + + .... ..+.+.+....
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~~-~--~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~er~~G~l~rl~~~P~ 76 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGSVT-H--N--RGATFIPVLMALAAISTAFTGQAIAVARDRRYGALKRLGATPL 76 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCccC-C--c--chhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHhcCCC
Confidence 699999999999999998889888876311 1 1 1111 22222211111
Q ss_pred ----HHHHHHHHHhhHHHHHHHHHHHHHhhccCcccccccce--e-----------------------------------
Q 039187 184 ----SAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFF--R----------------------------------- 222 (265)
Q Consensus 184 ----y~la~~~~~lp~~~~~~~i~~~i~y~~~g~~~~~~~~~--~----------------------------------- 222 (265)
|+++|.+..++..+++.+++..+ +++.|++....... .
T Consensus 77 ~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~ 155 (232)
T TIGR00025 77 PRLGILAGRSLAVVARVFLQTLILLVI-GFVLGFRFAGGALTALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANL 155 (232)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 99999998888887776666544 55668776433210 0
Q ss_pred ------eccccccCCCCCCcchhhhhhhcHHHHHHHHHhhhhcCC
Q 039187 223 ------LIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLGM 261 (265)
Q Consensus 223 ------l~sG~~~~~~~ip~~~~w~~~lsp~~y~~~al~~~ef~~ 261 (265)
++||.+.|.+.+|+|++|+++++|.+|+.+++-....++
T Consensus 156 ~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~~ 200 (232)
T TIGR00025 156 VWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATVS 200 (232)
T ss_pred HHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcCC
Confidence 899999999999999999999999999999986654443
No 15
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.51 E-value=1.2e-07 Score=82.41 Aligned_cols=64 Identities=20% Similarity=0.226 Sum_probs=57.3
Q ss_pred CchHHHHHHHHHHHHHhhCC-CeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhhC
Q 039187 1 LDARAASIVIRTVRNTVDTG-RTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLL 70 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~-~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~~ 70 (265)
||+.++.++.+.|++++++| +||++|+|++. ++.+.||+|++|++ |++++.|++ +++.+.+...
T Consensus 167 LDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~-G~~~~~g~~----~~l~~~~~~~ 231 (293)
T COG1131 167 LDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILND-GKIIAEGTP----EELKEKFGGK 231 (293)
T ss_pred CCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeC-CEEEEeCCH----HHHHHhhccC
Confidence 79999999999999999976 89999999986 78888999999998 999999988 7777766554
No 16
>PRK15066 inner membrane transport permease; Provisional
Probab=98.51 E-value=1.5e-06 Score=74.08 Aligned_cols=144 Identities=13% Similarity=0.120 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHHHHhhcChhH-HHHHHHHHHHHHHHHHHHhcCCCCCCCcChhhHHHhhhHHHHHHHH-----------
Q 039187 116 YFTQFMACLWKQWWSYWQNPAY-TAVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIIS----------- 183 (265)
Q Consensus 116 ~~~Q~~~L~~R~~~~~~R~~~~-~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~~~g~l~~~~~~----------- 183 (265)
.+.-++.+.+|+.+...|++.. +..-+++..+..+++|.++....++.++..-..+-..|.+......
T Consensus 6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~y~~fl~pGll~~~~~~~~~~~~~~~i~ 85 (257)
T PRK15066 6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFSYMQFIVPGLIMMSVITNSYSNVASSFF 85 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677889999999999999854 4445555666667777665422111110111111222322211111
Q ss_pred --------------------HHHHHHHHHhhHHHHHHHHHHHHHhhccCccccccccee---------------------
Q 039187 184 --------------------SAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFFR--------------------- 222 (265)
Q Consensus 184 --------------------y~la~~~~~lp~~~~~~~i~~~i~y~~~g~~~~~~~~~~--------------------- 222 (265)
+.+++.+......++++++...+.+...|.+......+.
T Consensus 86 ~~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~~~~~~l~~~ll~~~~f~~~gl~~a~~~ 165 (257)
T PRK15066 86 SAKFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVHHWGIVLLTVLLTAILFSLGGLINAVFA 165 (257)
T ss_pred HHHHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666655555555555554444443344432111000
Q ss_pred ------------------eccccccCCCCCCcchhhhhhhcHHHHHHHHHhhhhc
Q 039187 223 ------------------LIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRL 259 (265)
Q Consensus 223 ------------------l~sG~~~~~~~ip~~~~w~~~lsp~~y~~~al~~~ef 259 (265)
++||.+.|.+.+|+|++|+.++||++|..|++=..-+
T Consensus 166 ~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~ 220 (257)
T PRK15066 166 KSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFL 220 (257)
T ss_pred ccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHc
Confidence 7799999999999999999999999999998765433
No 17
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.47 E-value=3e-07 Score=75.77 Aligned_cols=61 Identities=23% Similarity=0.319 Sum_probs=54.4
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHH
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYF 67 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF 67 (265)
||+.++.++|+.|+++++ .|.|||++.||-.. .-++|||++=|++ |+++|.||+ +++.+.+
T Consensus 178 LDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~~-G~ivfDg~~----~el~~~~ 239 (258)
T COG3638 178 LDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLKA-GRIVFDGPA----SELTDEA 239 (258)
T ss_pred cChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEecC-CcEEEeCCh----hhhhHHH
Confidence 899999999999999998 69999999999864 5688999999998 999999999 6665443
No 18
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=98.40 E-value=4.3e-07 Score=74.83 Aligned_cols=78 Identities=15% Similarity=0.121 Sum_probs=62.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhccCcccc-ccccee------------------------------------eccc
Q 039187 184 SAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRT-ASKFFR------------------------------------LIPG 226 (265)
Q Consensus 184 y~la~~~~~lp~~~~~~~i~~~i~y~~~g~~~~-~~~~~~------------------------------------l~sG 226 (265)
++++|.+..++..++++++...+.++..|++.. ...++. +++|
T Consensus 62 ~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~~~~~~~~~~~~~sG 141 (208)
T TIGR03062 62 IALAKLLPGGLIGVLQAIILYGVLILGLGLDPAHPPATFGFAILTSLTFMAIIQFLVALFGNVGRFLALVLLVLQLGSSG 141 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHccCC
Confidence 577888888888888888888888887777653 111111 5789
Q ss_pred cccCCCCCCcchhhhhhhcHHHHHHHHHhhhhcCC
Q 039187 227 FMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLGM 261 (265)
Q Consensus 227 ~~~~~~~ip~~~~w~~~lsp~~y~~~al~~~ef~~ 261 (265)
.+.|.+.+|+|++|+++++|.+|+.+++-...+++
T Consensus 142 ~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~ 176 (208)
T TIGR03062 142 GTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGG 176 (208)
T ss_pred CccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCC
Confidence 89999999999999999999999999998777665
No 19
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.32 E-value=6.5e-07 Score=75.56 Aligned_cols=54 Identities=26% Similarity=0.310 Sum_probs=50.6
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||...+.+++++++++++ +|.|||+++|+++- ..+.+|++++|++ |+++..|+|
T Consensus 169 LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~-G~i~a~G~p 223 (258)
T COG1120 169 LDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKD-GKIVAQGTP 223 (258)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEEC-CeEEeecCc
Confidence 799999999999999996 69999999999984 5788999999998 999999998
No 20
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.15 E-value=2.4e-06 Score=74.77 Aligned_cols=59 Identities=24% Similarity=0.339 Sum_probs=53.7
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR 65 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~ 65 (265)
||+.++.++.+.|++++++|+|||+++|++. ++.+.+|++++|++ |++++.|++ +++.+
T Consensus 169 LD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~-G~i~~~g~~----~~l~~ 227 (306)
T PRK13537 169 LDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEE-GRKIAEGAP----HALIE 227 (306)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCH----HHHHh
Confidence 7999999999999999888999999999986 78889999999998 999999998 66543
No 21
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.12 E-value=4.1e-06 Score=69.48 Aligned_cols=63 Identities=21% Similarity=0.366 Sum_probs=57.0
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhh
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKL 69 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~ 69 (265)
||+.+...+-+.++++.++|.|||.|.|+.. .+-++||++++|++ |+.|.+|+. +++.+-|..
T Consensus 161 LDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~k-G~~V~~G~v----~~ir~~~Gk 223 (300)
T COG4152 161 LDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLYGTV----EDIRRSFGK 223 (300)
T ss_pred CChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecC-CceEEeccH----HHHHHhcCC
Confidence 8999999999999999999999999999985 68899999999998 999999999 777775533
No 22
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.11 E-value=4.4e-06 Score=72.47 Aligned_cols=54 Identities=22% Similarity=0.341 Sum_probs=50.3
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++..+.+.|+++++.|.|||+++|++. ++.+.+|++++|.+ |++++.|++
T Consensus 175 LD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~-G~i~~~g~~ 228 (288)
T PRK13643 175 LDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEK-GHIISCGTP 228 (288)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 7999999999999999878999999999984 67788999999998 999999998
No 23
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.11 E-value=3.3e-06 Score=71.02 Aligned_cols=53 Identities=17% Similarity=0.299 Sum_probs=50.0
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
+|+.++..++++|+++.++|+||++++|+++ .+.+.||+++.|++ ++.+.||+
T Consensus 170 vD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln~--~~~~~G~~ 222 (254)
T COG1121 170 VDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLNR--HLIASGPP 222 (254)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEcC--eeEeccCh
Confidence 6999999999999999999999999999997 68899999999995 89999999
No 24
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.07 E-value=5.8e-06 Score=65.74 Aligned_cols=54 Identities=17% Similarity=0.235 Sum_probs=51.0
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.-..+...++.++++ ++.|+++++|+|. ++-...|+++++.+ |++.+.|+.
T Consensus 160 LdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~-Gri~~~g~~ 214 (231)
T COG3840 160 LDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDN-GRIAAQGST 214 (231)
T ss_pred cCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeC-CEEEeeccH
Confidence 799999999999999998 6999999999996 78899999999999 999999998
No 25
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.06 E-value=4.6e-06 Score=73.98 Aligned_cols=59 Identities=24% Similarity=0.324 Sum_probs=53.9
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR 65 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~ 65 (265)
||+.++.++.+.|+++++.|+|||+++|++. ++.+.+|++++|.+ |++++.|++ +++.+
T Consensus 203 LD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~-G~i~~~g~~----~~l~~ 261 (340)
T PRK13536 203 LDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEA-GRKIAEGRP----HALID 261 (340)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH----HHHHh
Confidence 7999999999999999888999999999986 78889999999998 999999998 66543
No 26
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.02 E-value=6e-06 Score=69.48 Aligned_cols=54 Identities=9% Similarity=0.153 Sum_probs=50.2
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+...+.+.|++++++|+|||+++|++. ++.+.+|++++|.+ |++++.|++
T Consensus 168 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 221 (237)
T PRK11614 168 LAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLEN-GHVVLEDTG 221 (237)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeC-CEEEeeCCH
Confidence 7999999999999999888999999999985 67889999999998 999999987
No 27
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.01 E-value=6.8e-06 Score=71.81 Aligned_cols=59 Identities=24% Similarity=0.286 Sum_probs=53.3
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR 65 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~ 65 (265)
||+.+...+.+.|++++++|+|||+++|++. ++.+.+|++++|.+ |++++.|++ +++.+
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g~~----~~l~~ 213 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDH-GRIIAEGTP----EELKR 213 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCH----HHHHH
Confidence 7999999999999999888999999999985 78889999999998 999999998 66543
No 28
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.99 E-value=7.1e-06 Score=70.75 Aligned_cols=54 Identities=15% Similarity=0.241 Sum_probs=51.0
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||...+.+++++|+++.+ .|.++|+++|+.+ -+.+++|+|.+|.. |+++..||+
T Consensus 184 LDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMYa-G~iVE~g~~ 238 (316)
T COG0444 184 LDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMYA-GRIVEEGPV 238 (316)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEEC-cEEEEeCCH
Confidence 799999999999999998 7999999999997 57899999999998 999999998
No 29
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.99 E-value=1.2e-05 Score=65.63 Aligned_cols=54 Identities=22% Similarity=0.286 Sum_probs=50.7
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
|||....++.+.+++||+.|.|.+|++|... ..-+..|||+.|++ |+++-.|++
T Consensus 167 LDPElv~EVL~vm~~LA~eGmTMivVTHEM~-FAr~VadrviFmd~-G~iie~g~p 220 (240)
T COG1126 167 LDPELVGEVLDVMKDLAEEGMTMIIVTHEMG-FAREVADRVIFMDQ-GKIIEEGPP 220 (240)
T ss_pred CCHHHHHHHHHHHHHHHHcCCeEEEEechhH-HHHHhhheEEEeeC-CEEEEecCH
Confidence 8999999999999999999999999999987 45688999999998 999999988
No 30
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.97 E-value=1.1e-05 Score=64.95 Aligned_cols=54 Identities=20% Similarity=0.337 Sum_probs=49.7
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||-..+.++|+.||++++ -|+||++++|+-+- .-...|+|+-|++ |+++..|++
T Consensus 166 LDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~-G~vv~~G~~ 220 (252)
T COG4604 166 LDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKN-GKVVKQGSP 220 (252)
T ss_pred cchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecC-CEEEecCCH
Confidence 789999999999999998 59999999999984 4467999999998 999999999
No 31
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.95 E-value=1.3e-05 Score=65.73 Aligned_cols=62 Identities=16% Similarity=0.178 Sum_probs=52.4
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHH-hhhhhhhccCCCeEEEecCCCCCcchHHHHHhh
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFE-AFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKL 69 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~-~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~ 69 (265)
||+.+..++.+.|+++++.|+|||+++|++. .+.+ .+|++++|.+ |++...|+. ++.+.|..
T Consensus 135 LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~-G~i~~~~~~-----~~~~~~~~ 197 (200)
T cd03217 135 LDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYD-GRIVKSGDK-----ELALEIEK 197 (200)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEEC-CEEEEEccH-----HHHhhhcc
Confidence 7999999999999999878999999999986 5555 6999999998 999999964 45555543
No 32
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.94 E-value=1.1e-05 Score=70.64 Aligned_cols=58 Identities=24% Similarity=0.334 Sum_probs=52.8
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHH
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLT 64 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~ 64 (265)
||+.++..+.+.|+++++.|.|||+++|++. ++.+.+|++++|.+ |++++.|++ +++.
T Consensus 166 LD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~----~~~~ 223 (303)
T TIGR01288 166 LDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLES-GRKIAEGRP----HALI 223 (303)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH----HHHH
Confidence 7999999999999999888999999999986 77788999999998 999999998 5554
No 33
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.94 E-value=1.1e-05 Score=67.85 Aligned_cols=54 Identities=19% Similarity=0.244 Sum_probs=50.1
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++++.|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 174 LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 227 (236)
T cd03219 174 LNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQ-GRVIAEGTP 227 (236)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEeecCH
Confidence 7999999999999999888999999999986 67788999999998 999999987
No 34
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.94 E-value=9e-06 Score=73.62 Aligned_cols=54 Identities=30% Similarity=0.333 Sum_probs=50.6
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..++.++++.|+++++.|+|||+++|++. ++.+.+|++++|++ |+++..|++
T Consensus 170 LD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~-G~iv~~G~~ 223 (402)
T PRK09536 170 LDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLAD-GRVRAAGPP 223 (402)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 7999999999999999888999999999986 67889999999998 999999998
No 35
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.91 E-value=1.3e-05 Score=68.25 Aligned_cols=54 Identities=19% Similarity=0.240 Sum_probs=49.7
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++++.|+|||+++|++. ++.+.+|++++|.+ |++++.|++
T Consensus 183 LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 236 (257)
T PRK10619 183 LDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQ-GKIEEEGAP 236 (257)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 7999999999999999888999999999985 56778999999998 999999987
No 36
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.91 E-value=1.1e-05 Score=67.87 Aligned_cols=54 Identities=19% Similarity=0.252 Sum_probs=49.8
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+...+++.|+++++ .|+|||+++|++. ++.+.+|++++|.+ |++++.|++
T Consensus 167 LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 221 (235)
T cd03261 167 LDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIVAEGTP 221 (235)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEEC-CeEEEecCH
Confidence 799999999999999987 5999999999986 67788999999998 999999987
No 37
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.91 E-value=1.4e-05 Score=67.38 Aligned_cols=54 Identities=17% Similarity=0.193 Sum_probs=49.7
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|++++++|+|||+++|++. ++.+.+|++++|.+ |++++.|+.
T Consensus 167 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 220 (240)
T PRK09493 167 LDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDK-GRIAEDGDP 220 (240)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeCCH
Confidence 7999999999999999878999999999986 56788999999998 999999987
No 38
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.91 E-value=1.2e-05 Score=66.82 Aligned_cols=54 Identities=15% Similarity=0.288 Sum_probs=49.7
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+..++++.|++++++|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (222)
T cd03224 163 LAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLER-GRVVLEGTA 216 (222)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeC-CeEEEeCCH
Confidence 7999999999999999888999999999985 67788999999998 999999987
No 39
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.90 E-value=1.5e-05 Score=66.09 Aligned_cols=59 Identities=22% Similarity=0.285 Sum_probs=53.6
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR 65 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~ 65 (265)
||+-++..+-+++++|.+ -|.|+++++|+.. +++..+|++++|++ |+++..|++ +++.+
T Consensus 176 LDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~-gkv~~~Gt~----~el~~ 235 (263)
T COG1127 176 LDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLAD-GKVIAEGTP----EELLA 235 (263)
T ss_pred CCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeC-CEEEEeCCH----HHHHh
Confidence 799999999999999998 5999999999986 68999999999998 999999999 55543
No 40
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=97.89 E-value=1e-05 Score=63.45 Aligned_cols=34 Identities=12% Similarity=-0.055 Sum_probs=31.7
Q ss_pred eccccccCCCCCCcchhhhhhhcHHHHHHHHHhh
Q 039187 223 LIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIA 256 (265)
Q Consensus 223 l~sG~~~~~~~ip~~~~w~~~lsp~~y~~~al~~ 256 (265)
++||.+.|.+++|+|++|+.+++|.+|+.|++=.
T Consensus 114 flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R~ 147 (152)
T TIGR01248 114 FLNPGATPIKLFPDWAQPLIAHQPISPAIEACAD 147 (152)
T ss_pred HHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHHH
Confidence 7889999999999999999999999999999753
No 41
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.89 E-value=1.6e-05 Score=66.92 Aligned_cols=54 Identities=22% Similarity=0.293 Sum_probs=49.7
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+...+.+.|+++++ .|+|||+++|++. ++.+.+|++++|.+ |++++.|++
T Consensus 175 LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 229 (241)
T cd03256 175 LDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKD-GRIVFDGPP 229 (241)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeecCH
Confidence 799999999999999987 5999999999986 57779999999998 999999987
No 42
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.89 E-value=1.5e-05 Score=66.76 Aligned_cols=54 Identities=19% Similarity=0.237 Sum_probs=50.3
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+..++.+.|+++++.|+|||+++|++. ++.+.+|++++|.+ |+++..|+.
T Consensus 164 LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 217 (232)
T cd03218 164 VDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYE-GKVLAEGTP 217 (232)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEEeCH
Confidence 7999999999999999888999999999986 78889999999998 999999987
No 43
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.88 E-value=1.5e-05 Score=68.79 Aligned_cols=54 Identities=24% Similarity=0.365 Sum_probs=50.0
Q ss_pred CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..++..+.+.|++++++ |.|||+++|++. ++.+.+|++++|.+ |++++.|++
T Consensus 168 LD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~-G~i~~~g~~ 222 (277)
T PRK13652 168 LDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDK-GRIVAYGTV 222 (277)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEEECCH
Confidence 7999999999999999875 999999999986 67789999999998 999999998
No 44
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.88 E-value=1.4e-05 Score=70.98 Aligned_cols=54 Identities=15% Similarity=0.235 Sum_probs=49.9
Q ss_pred CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++..+++.|+++.++ |.|||+++|++. .+.+.+|++++|.+ |+++..|++
T Consensus 171 LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~-G~iv~~g~~ 225 (343)
T TIGR02314 171 LDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELIEQGTV 225 (343)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 7999999999999999884 999999999985 67788999999998 999999997
No 45
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.87 E-value=1.4e-05 Score=69.40 Aligned_cols=54 Identities=17% Similarity=0.212 Sum_probs=50.1
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++.++.+.|+++++ .|.|||+++|++. ++.+.+|++++|.+ |++++.|++
T Consensus 176 LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~-G~i~~~g~~ 230 (290)
T PRK13634 176 LDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHK-GTVFLQGTP 230 (290)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 799999999999999987 4999999999986 67888999999998 999999987
No 46
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.87 E-value=1.5e-05 Score=70.14 Aligned_cols=54 Identities=19% Similarity=0.341 Sum_probs=50.1
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++.++++.|+++.++|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 207 LD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~~~adri~vl~~-G~i~~~g~~ 260 (320)
T PRK13631 207 LDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVADEVIVMDK-GKILKTGTP 260 (320)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 7999999999999999878999999999986 56788999999998 999999998
No 47
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=97.86 E-value=1.7e-05 Score=69.46 Aligned_cols=54 Identities=19% Similarity=0.286 Sum_probs=50.1
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++..+.+.|+++++.|.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 196 LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~adrv~vl~~-G~i~~~g~~ 249 (305)
T PRK13651 196 LDPQGVKEILEIFDNLNKQGKTIILVTHDLD-NVLEWTKRTIFFKD-GKIIKDGDT 249 (305)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 7999999999999999888999999999985 57788999999998 999999998
No 48
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.85 E-value=1.8e-05 Score=66.44 Aligned_cols=54 Identities=15% Similarity=0.302 Sum_probs=50.5
Q ss_pred CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+....++++.++++.+. |+|||+++|+.. .+.+.+|++++|.+ |++++.|++
T Consensus 169 LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~-G~i~~~g~p 223 (235)
T COG1122 169 LDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDD-GKILADGDP 223 (235)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEEC-CEEeecCCH
Confidence 7999999999999999985 799999999975 78888999999998 999999998
No 49
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.85 E-value=1.8e-05 Score=66.64 Aligned_cols=54 Identities=28% Similarity=0.303 Sum_probs=49.4
Q ss_pred CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+...+.+.|++++++ |+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 167 LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 221 (239)
T cd03296 167 LDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNK-GRIEQVGTP 221 (239)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEecCH
Confidence 7999999999999999874 899999999985 57788999999998 999999987
No 50
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.85 E-value=1.7e-05 Score=66.82 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=48.7
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHh-hhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEA-FDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~-fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+...+.+.|++++++|+|||+++|++. .+.+. +|++++|.+ |+++..|++
T Consensus 175 LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~-G~i~~~g~~ 229 (243)
T TIGR01978 175 LDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLD-GRIVKSGDV 229 (243)
T ss_pred CCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeC-CEEEEecCH
Confidence 7999999999999999888999999999985 55566 799999998 999999987
No 51
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.84 E-value=1.8e-05 Score=68.13 Aligned_cols=54 Identities=20% Similarity=0.314 Sum_probs=49.8
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++.++.+.|++++++|.|||+++|++. .+.+.+|++++|++ |++++.|++
T Consensus 169 LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 222 (274)
T PRK13647 169 LDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKE-GRVLAEGDK 222 (274)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 7999999999999999888999999999975 56688999999998 999999987
No 52
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.84 E-value=1.8e-05 Score=68.54 Aligned_cols=54 Identities=22% Similarity=0.303 Sum_probs=49.5
Q ss_pred CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+..++.+.|++++++ |+||++++|++. ++.+.+|++++|.+ |++++.|++
T Consensus 172 LD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~-G~i~~~g~~ 226 (283)
T PRK13636 172 LDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKE-GRVILQGNP 226 (283)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 7999999999999999875 999999999986 46678999999998 999999998
No 53
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.84 E-value=2.3e-05 Score=65.33 Aligned_cols=54 Identities=22% Similarity=0.255 Sum_probs=50.0
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|++++++|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 155 LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 208 (223)
T TIGR03740 155 LDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISE-GVLGYQGKI 208 (223)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeC-CEEEEecCh
Confidence 7999999999999999878999999999986 57788999999998 999999987
No 54
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.84 E-value=2e-05 Score=66.88 Aligned_cols=54 Identities=26% Similarity=0.290 Sum_probs=49.8
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++++.|.|||+++|++. ++.+.+|++++|.+ |++++.|++
T Consensus 175 LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 228 (250)
T PRK11264 175 LDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQ-GRIVEQGPA 228 (250)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 7999999999999999888999999999985 67788999999998 999999987
No 55
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.83 E-value=2e-05 Score=68.39 Aligned_cols=54 Identities=13% Similarity=0.263 Sum_probs=49.7
Q ss_pred CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++.++.+.|++++++ |+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 175 LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~-G~i~~~g~~ 229 (287)
T PRK13637 175 LDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-GKCELQGTP 229 (287)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 7999999999999999874 999999999985 67788999999998 999999988
No 56
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=97.82 E-value=2.2e-05 Score=69.47 Aligned_cols=54 Identities=11% Similarity=0.191 Sum_probs=49.9
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..++.++++.|+++.+ .|.|+|+++|++. .+.+.+|++++|.+ |+++..|++
T Consensus 192 LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~-G~ive~g~~ 246 (330)
T PRK09473 192 LDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYA-GRTMEYGNA 246 (330)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 799999999999999987 4999999999986 56678999999998 999999998
No 57
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.81 E-value=2.3e-05 Score=66.70 Aligned_cols=54 Identities=22% Similarity=0.316 Sum_probs=50.0
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+...+.+.|++++++|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 169 LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 222 (255)
T PRK11231 169 LDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLAN-GHVMAQGTP 222 (255)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEEC-CeEEEEcCH
Confidence 7999999999999999878999999999986 67889999999998 999999987
No 58
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.81 E-value=2.2e-05 Score=65.84 Aligned_cols=54 Identities=19% Similarity=0.305 Sum_probs=49.3
Q ss_pred CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+...+.+.|++++++ |+|||+++|++. ++.+.+|++++|.+ |+++..|+.
T Consensus 171 LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 225 (233)
T cd03258 171 LDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEK-GEVVEEGTV 225 (233)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 7999999999999999874 999999999985 67788999999998 999999987
No 59
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.80 E-value=2.1e-05 Score=66.67 Aligned_cols=53 Identities=13% Similarity=0.070 Sum_probs=48.5
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+...+.+.|+++. +++|||+++|++. ++.+.+|++++|.+ |++++.|++
T Consensus 177 LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~-G~~~~~~~~ 229 (250)
T PRK14245 177 LDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYM-GEMVEYDDT 229 (250)
T ss_pred CCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEEC-CEEEEECCH
Confidence 79999999999999995 4799999999986 67788999999998 999999988
No 60
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.80 E-value=3.1e-05 Score=63.08 Aligned_cols=54 Identities=22% Similarity=0.315 Sum_probs=50.5
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||...+..++++.|++++.|-.|+++.|+.+- .-.++|+|++|.+ |+++..|++
T Consensus 172 LDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~-Grv~a~g~p 225 (259)
T COG4559 172 LDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQ-GRVIASGSP 225 (259)
T ss_pred cchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeC-CeEeecCCH
Confidence 78999999999999999999999999999985 4578999999998 999999999
No 61
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.79 E-value=2.4e-05 Score=69.61 Aligned_cols=54 Identities=15% Similarity=0.255 Sum_probs=49.9
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+...+.+.|+++++ .|+|||+++|++. ++.+.+|++++|.+ |++++.|++
T Consensus 171 LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~-G~i~~~g~~ 225 (343)
T PRK11153 171 LDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDA-GRLVEQGTV 225 (343)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 799999999999999987 4999999999986 67788999999998 999999987
No 62
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.79 E-value=2.6e-05 Score=66.35 Aligned_cols=54 Identities=13% Similarity=0.185 Sum_probs=49.7
Q ss_pred CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|++++++ |.|||+++|++. ++.+.+|++++|.+ |++++.|++
T Consensus 184 LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 238 (255)
T PRK11300 184 LNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRIYVVNQ-GTPLANGTP 238 (255)
T ss_pred CCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEecCCH
Confidence 7999999999999999885 999999999986 67788999999998 999999987
No 63
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.78 E-value=2.3e-05 Score=72.44 Aligned_cols=59 Identities=15% Similarity=0.228 Sum_probs=53.5
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR 65 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~ 65 (265)
||..++.+|+++||++.+ .|.++|.++|+|. -+.+++|++++|.+ |+++..|++ +++.+
T Consensus 185 LDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDrv~Vm~~-G~iVE~G~~----~~i~~ 244 (539)
T COG1123 185 LDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELADRVVVMYK-GEIVETGPT----EEILS 244 (539)
T ss_pred cCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCeEEEEEC-CEEEEecCH----HHHHh
Confidence 799999999999999997 7999999999997 47788999999998 999999999 55554
No 64
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=97.77 E-value=2.7e-05 Score=68.86 Aligned_cols=54 Identities=9% Similarity=0.117 Sum_probs=49.9
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..++.++++.|+++.+ .|.|||+++|++. .+.+.+|++++|.+ |+++..|++
T Consensus 189 LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~vm~~-G~ive~g~~ 243 (330)
T PRK15093 189 MEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKINVLYC-GQTVETAPS 243 (330)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 799999999999999988 5999999999985 67788999999998 999999987
No 65
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=97.77 E-value=2.8e-05 Score=64.85 Aligned_cols=53 Identities=17% Similarity=0.283 Sum_probs=48.9
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|++++++|+|||+++|++. ++.+.+|+++++ + |++++.|++
T Consensus 144 LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~-G~i~~~~~~ 196 (223)
T TIGR03771 144 LDMPTQELLTELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-N-GRVIADGTP 196 (223)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeecCH
Confidence 7999999999999999878999999999986 688889999999 7 899999987
No 66
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.77 E-value=2.6e-05 Score=67.14 Aligned_cols=53 Identities=21% Similarity=0.398 Sum_probs=48.7
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++..+.+.|+++.+.|.|||+++|++. ++ ..+|++++|.+ |+++..|++
T Consensus 167 LD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~-G~i~~~g~~ 219 (274)
T PRK13644 167 LDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDR-GKIVLEGEP 219 (274)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEEC-CEEEEECCH
Confidence 7999999999999999878999999999987 45 66999999998 999999997
No 67
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.77 E-value=3.1e-05 Score=64.90 Aligned_cols=54 Identities=11% Similarity=0.110 Sum_probs=49.3
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..++..+.+.|+++++ .|+|||+++|++. ++.+.+|++++|.+ |++++.|++
T Consensus 160 LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~g~~ 214 (232)
T PRK10771 160 LDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVAD-GRIAWDGPT 214 (232)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 799999999999999987 5999999999986 66788999999998 999999987
No 68
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=97.77 E-value=2.9e-05 Score=66.16 Aligned_cols=54 Identities=26% Similarity=0.305 Sum_probs=49.8
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++.++|.|||+++|++. ++.+.+|++++|.+ |+++..|+.
T Consensus 168 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 221 (256)
T TIGR03873 168 LDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDG-GRVVAAGPP 221 (256)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CCEEEecCH
Confidence 7999999999999999877899999999986 67788999999998 999999987
No 69
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.77 E-value=3e-05 Score=66.16 Aligned_cols=54 Identities=22% Similarity=0.289 Sum_probs=49.2
Q ss_pred CchHHHHHHHHHHHHHh-hCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTV-DTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~-~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+...+.+.|++++ +.|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 171 LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 225 (258)
T PRK13548 171 LDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQ-GRLVADGTP 225 (258)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEEC-CEEEeeCCH
Confidence 79999999999999998 57999999999985 57788999999998 999998887
No 70
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.77 E-value=3.1e-05 Score=66.60 Aligned_cols=54 Identities=26% Similarity=0.423 Sum_probs=49.7
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+...+.+.|+++++.|.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 167 LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 220 (271)
T PRK13638 167 LDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQ-GQILTHGAP 220 (271)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 7999999999999999877999999999986 56788999999998 999999987
No 71
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.77 E-value=3e-05 Score=66.84 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=49.9
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+..++.+.|++++++|.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 168 LD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 221 (275)
T PRK13639 168 LDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSD-GKIIKEGTP 221 (275)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 7999999999999999878999999999975 66788999999998 999999988
No 72
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.77 E-value=2.8e-05 Score=69.35 Aligned_cols=54 Identities=24% Similarity=0.292 Sum_probs=50.6
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+..++.+.|+++.+ .|.|+|+++|++. ++.+++|++++|++ |+++..|++
T Consensus 165 LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~-G~i~~~g~~ 219 (353)
T TIGR03265 165 LDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNH-GVIEQVGTP 219 (353)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 799999999999999987 4999999999985 78999999999998 999999998
No 73
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=97.77 E-value=3.1e-05 Score=68.35 Aligned_cols=54 Identities=19% Similarity=0.208 Sum_probs=50.0
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..++.++++.|+++.+ .|.|+|+++|+.+ .+.+.+|+|++|.+ |+++..|++
T Consensus 184 LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~~-G~ive~g~~ 238 (326)
T PRK11022 184 LDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMYA-GQVVETGKA 238 (326)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 799999999999999987 6999999999986 56788999999998 999999998
No 74
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.76 E-value=3.3e-05 Score=62.43 Aligned_cols=54 Identities=19% Similarity=0.330 Sum_probs=50.6
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||-.+...+-+.++++...|++||.++|... |+-.+||+++++.+ |++++.|.+
T Consensus 164 LDi~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~-Gevv~~gs~ 217 (245)
T COG4555 164 LDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEGSI 217 (245)
T ss_pred ccHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEec-CcEEEcCCH
Confidence 7889999999999999999999999999975 78889999999999 999999998
No 75
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.76 E-value=2.9e-05 Score=65.51 Aligned_cols=54 Identities=24% Similarity=0.348 Sum_probs=49.4
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++++ .|+|||+++|++. ++.+.+|++++|.+ |++++.|++
T Consensus 166 LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 220 (242)
T cd03295 166 LDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKN-GEIVQVGTP 220 (242)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 799999999999999987 4999999999985 67788999999998 999999987
No 76
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.76 E-value=3.2e-05 Score=65.19 Aligned_cols=54 Identities=20% Similarity=0.262 Sum_probs=49.6
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++++.|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 168 LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 221 (241)
T PRK10895 168 VDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQ-GHLIAHGTP 221 (241)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeC-CeEEeeCCH
Confidence 7999999999999999888999999999984 67788999999998 999999987
No 77
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.76 E-value=3e-05 Score=65.43 Aligned_cols=54 Identities=20% Similarity=0.287 Sum_probs=49.2
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++++ .|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 176 LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 230 (243)
T TIGR02315 176 LDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKA-GEIVFDGAP 230 (243)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecCCH
Confidence 799999999999999987 5899999999986 56788999999998 999999987
No 78
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.76 E-value=2.9e-05 Score=67.01 Aligned_cols=54 Identities=15% Similarity=0.284 Sum_probs=49.6
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+...+.+.|+++++.|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 176 LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 229 (280)
T PRK13649 176 LDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEK-GKLVLSGKP 229 (280)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 7999999999999999878999999999985 67788999999998 999999987
No 79
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.75 E-value=3.1e-05 Score=67.13 Aligned_cols=54 Identities=20% Similarity=0.297 Sum_probs=49.8
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++.++.+.|+++.+ .|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 176 LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~-G~i~~~g~~ 230 (286)
T PRK13646 176 LDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKE-GSIVSQTSP 230 (286)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 799999999999999987 5999999999986 57788999999998 999999987
No 80
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.75 E-value=4.5e-05 Score=65.47 Aligned_cols=54 Identities=17% Similarity=0.279 Sum_probs=49.6
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
|||.|+..++++|+++-+ .|-||++++|++. -+-+.||++.+|.+ |+++..|+.
T Consensus 172 LDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~-G~lvE~G~v 226 (339)
T COG1135 172 LDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLDQ-GRLVEEGTV 226 (339)
T ss_pred CChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEeeC-CEEEEeccH
Confidence 899999999999999977 6999999999985 35677999999998 999999997
No 81
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.75 E-value=3.1e-05 Score=66.47 Aligned_cols=54 Identities=15% Similarity=0.308 Sum_probs=49.4
Q ss_pred CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+...+.+.|++++++ |+|||+++|++. ++.+.+|++++|.+ |++++.|++
T Consensus 174 LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 228 (269)
T PRK11831 174 QDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVAD-KKIVAHGSA 228 (269)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEEC-CEEEEeCCH
Confidence 7999999999999999874 899999999975 67788999999998 999999987
No 82
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.75 E-value=3.2e-05 Score=69.06 Aligned_cols=54 Identities=26% Similarity=0.249 Sum_probs=50.3
Q ss_pred CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+..++.+.|+++.++ |.|+|+++|++. ++.+++|++++|.+ |+++..|++
T Consensus 167 LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~-G~i~~~g~~ 221 (353)
T PRK10851 167 LDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQ-GNIEQAGTP 221 (353)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 7999999999999999875 999999999985 78899999999998 999999998
No 83
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=97.75 E-value=3.5e-05 Score=65.38 Aligned_cols=54 Identities=22% Similarity=0.306 Sum_probs=49.8
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+...+.+.|++++++|.|||+++|++. ++.+.+|++++|.+ |+++..|+.
T Consensus 164 LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 217 (248)
T PRK03695 164 LDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQ-GKLLASGRR 217 (248)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 7999999999999999878999999999986 57788999999998 999999987
No 84
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.74 E-value=3.3e-05 Score=66.96 Aligned_cols=54 Identities=17% Similarity=0.292 Sum_probs=49.9
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++++.|.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 176 LD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 229 (287)
T PRK13641 176 LDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH-GKLIKHASP 229 (287)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 7999999999999999878999999999985 67788999999998 999999987
No 85
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.74 E-value=3.9e-05 Score=65.71 Aligned_cols=54 Identities=13% Similarity=0.186 Sum_probs=49.9
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++++ .|.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 174 LD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 228 (265)
T PRK10253 174 LDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALRE-GKIVAQGAP 228 (265)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 799999999999999987 4899999999986 68899999999998 999999987
No 86
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.74 E-value=3.1e-05 Score=66.66 Aligned_cols=54 Identities=19% Similarity=0.242 Sum_probs=49.6
Q ss_pred CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+...+.+.|++++++ |.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 185 LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 239 (272)
T PRK13547 185 LDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIAMLAD-GAIVAHGAP 239 (272)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CeEEEecCH
Confidence 7999999999999999875 899999999986 67788999999998 999999987
No 87
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.73 E-value=3.4e-05 Score=64.60 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=49.6
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++++ .|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 156 LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 210 (230)
T TIGR02770 156 LDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDD-GRIVERGTV 210 (230)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 799999999999999987 4899999999986 67788999999998 999999987
No 88
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.73 E-value=3.9e-05 Score=64.49 Aligned_cols=54 Identities=24% Similarity=0.297 Sum_probs=49.2
Q ss_pred CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..++..+.+.|++++.+ |+|||+++|++. ++.+.+|++++|.+ |+++..|+.
T Consensus 160 LD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 214 (235)
T cd03299 160 LDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLN-GKLIQVGKP 214 (235)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 7999999999999999874 999999999985 57788999999998 999999987
No 89
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.73 E-value=3.8e-05 Score=65.96 Aligned_cols=54 Identities=20% Similarity=0.201 Sum_probs=49.4
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++++ .|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 191 LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 245 (269)
T cd03294 191 LDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKD-GRLVQVGTP 245 (269)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 799999999999999987 4899999999986 67788999999998 999999987
No 90
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=97.73 E-value=3.7e-05 Score=64.76 Aligned_cols=54 Identities=24% Similarity=0.263 Sum_probs=49.6
Q ss_pred CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++++. |+|||+++|++. ++.+.+|++++|.+ |+++..|+.
T Consensus 161 LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 215 (237)
T TIGR00968 161 LDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSN-GKIEQIGSP 215 (237)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEecCH
Confidence 7999999999999999885 899999999985 67788999999998 999999997
No 91
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=97.73 E-value=3.5e-05 Score=68.07 Aligned_cols=54 Identities=19% Similarity=0.275 Sum_probs=50.1
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+..++.+.|+++.+ .|+|||+++|++. ++.+++|++++|.+ |+++..|++
T Consensus 131 LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~-e~~~~~d~i~vl~~-G~i~~~g~~ 185 (325)
T TIGR01187 131 LDKKLRDQMQLELKTIQEQLGITFVFVTHDQE-EAMTMSDRIAIMRK-GKIAQIGTP 185 (325)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 799999999999999987 4999999999985 78899999999998 999999988
No 92
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.73 E-value=3.5e-05 Score=67.27 Aligned_cols=58 Identities=16% Similarity=0.229 Sum_probs=51.9
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR 65 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~ 65 (265)
||+.+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|.+ |++++.|+. +++..
T Consensus 164 LD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~-G~i~~~g~~----~~~~~ 221 (301)
T TIGR03522 164 LDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINK-GKIVADKKL----DELSA 221 (301)
T ss_pred CCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH----HHHHH
Confidence 799999999999999975 799999999986 78899999999998 999999998 55543
No 93
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=97.72 E-value=3.3e-05 Score=66.14 Aligned_cols=54 Identities=13% Similarity=0.168 Sum_probs=49.4
Q ss_pred CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++..+.+.|+++.+. |+|||+++|++. .+.+.+|++++|.+ |+++..|++
T Consensus 181 LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 235 (265)
T TIGR02769 181 LDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDK-GQIVEECDV 235 (265)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeC-CEEEEECCH
Confidence 7999999999999999874 999999999986 66778999999997 999999998
No 94
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.72 E-value=4.1e-05 Score=65.05 Aligned_cols=54 Identities=17% Similarity=0.179 Sum_probs=49.4
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+...+.+.|+++++ .|.|||+++|++. ++.+.+|++++|.+ |+++..|+.
T Consensus 177 LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 231 (252)
T TIGR03005 177 LDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFFDK-GRIVEQGKP 231 (252)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 799999999999999987 4999999999986 67788999999998 999999887
No 95
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.72 E-value=3.5e-05 Score=66.85 Aligned_cols=54 Identities=17% Similarity=0.298 Sum_probs=49.5
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++..+.+.|+++++ .|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 181 LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 235 (289)
T PRK13645 181 LDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHE-GKVISIGSP 235 (289)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 799999999999999987 5999999999986 67788999999998 999999987
No 96
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.70 E-value=4e-05 Score=68.57 Aligned_cols=54 Identities=19% Similarity=0.230 Sum_probs=50.3
Q ss_pred CchHHHHHHHHHHHHHhhC--CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDT--GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~--~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+..++.+.|+++.++ |.|+|+++|++. ++..++|++++|.+ |+++..|++
T Consensus 168 LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~-G~i~~~g~~ 223 (362)
T TIGR03258 168 LDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKD-GRLAAHGEP 223 (362)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 7999999999999999885 899999999985 78899999999998 999999998
No 97
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.70 E-value=4.5e-05 Score=68.13 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=50.4
Q ss_pred CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..++.++.+.|+++.++ |.|+|+++|++. ++.+++|++++|.+ |+++..|++
T Consensus 165 LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~-G~i~~~g~~ 219 (356)
T PRK11650 165 LDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNG-GVAEQIGTP 219 (356)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEECCH
Confidence 7999999999999999874 999999999985 78999999999998 999999998
No 98
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.69 E-value=4.4e-05 Score=65.14 Aligned_cols=53 Identities=17% Similarity=0.084 Sum_probs=48.2
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..++..+.+.|+++++ |+|||+++|++. ++.+.+|++++|.+ |++++.|++
T Consensus 185 LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 237 (258)
T PRK14268 185 LDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFLM-GELIEFGQT 237 (258)
T ss_pred cCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 799999999999999965 899999999985 56788999999998 999999987
No 99
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=97.69 E-value=4.2e-05 Score=67.61 Aligned_cols=54 Identities=20% Similarity=0.198 Sum_probs=49.7
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..++.++++.|+++.+ .|.|||+++|+.+ .+.+.+|++++|.+ |+++..|++
T Consensus 185 LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~-G~ive~g~~ 239 (327)
T PRK11308 185 LDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYL-GRCVEKGTK 239 (327)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 799999999999999987 5999999999986 56678999999998 999999997
No 100
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.68 E-value=5.9e-05 Score=62.66 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=53.7
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHH
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRY 66 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~y 66 (265)
||+..+.+++++|.++.+ .|-|.|+++|+-+ -+..+||||.+|.+ |+++..+|+ +++.+.
T Consensus 172 LD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~-G~ivE~~~~----~~l~~~ 232 (252)
T COG1124 172 LDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDN-GQIVEIGPT----EELLSH 232 (252)
T ss_pred hcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeC-CeEEEeech----hhhhcC
Confidence 799999999999999998 6889999999986 68899999999999 999999999 555443
No 101
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.68 E-value=4.1e-05 Score=64.18 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=49.2
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+..++.+.|+++++ .|+|||+++|++. ++.+.+|++++|.+ |+++..|+.
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 199 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTN-GPAANIGQI 199 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CcEecccCc
Confidence 799999999999999987 4899999999986 67788999999998 999988876
No 102
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.68 E-value=4.5e-05 Score=65.34 Aligned_cols=54 Identities=22% Similarity=0.213 Sum_probs=49.4
Q ss_pred CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..++.++.+.|++++++ |.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 178 LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~-G~i~~~~~~ 232 (265)
T PRK10575 178 LDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRG-GEMIAQGTP 232 (265)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEecCH
Confidence 7999999999999999874 999999999986 67788999999998 999999987
No 103
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.67 E-value=5.2e-05 Score=64.78 Aligned_cols=55 Identities=22% Similarity=0.134 Sum_probs=49.7
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCC----CeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQG----RQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~g----g~~~y~G~~ 56 (265)
||..+...+.+.|+++++ .|+|||+++|++. ++.+.+|++++|.+| |+++..|++
T Consensus 181 LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~ 240 (261)
T PRK14258 181 LDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNENRIGQLVEFGLT 240 (261)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCCCcCceEEEeCCH
Confidence 799999999999999976 5999999999985 788899999999953 899999998
No 104
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.67 E-value=5.2e-05 Score=64.42 Aligned_cols=53 Identities=17% Similarity=0.165 Sum_probs=48.5
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 180 LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 232 (253)
T PRK14267 180 IDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLYL-GKLIEVGPT 232 (253)
T ss_pred CCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEEC-CEEEEeCCH
Confidence 799999999999999976 699999999986 67788999999998 999999987
No 105
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=97.67 E-value=5e-05 Score=67.85 Aligned_cols=54 Identities=13% Similarity=0.230 Sum_probs=50.0
Q ss_pred CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+..++.+.|++++++ |+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 162 LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (354)
T TIGR02142 162 LDDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLED-GRVAAAGPI 216 (354)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEEECCH
Confidence 7999999999999999875 999999999986 67888999999998 999999987
No 106
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.66 E-value=5.5e-05 Score=63.82 Aligned_cols=54 Identities=19% Similarity=0.248 Sum_probs=49.5
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|++++++|+|+|+++|++. ++.+.+|++++|.+ |++++.|++
T Consensus 172 LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 225 (242)
T PRK11124 172 LDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMEN-GHIVEQGDA 225 (242)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 7999999999999999878999999999986 66678999999998 999999987
No 107
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=97.66 E-value=4.7e-05 Score=67.35 Aligned_cols=54 Identities=15% Similarity=0.252 Sum_probs=49.7
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..++.++++.|+++.+ .|.|+|+++|++. .+.+.+|++++|.+ |+++..|++
T Consensus 192 LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~-G~ive~g~~ 246 (331)
T PRK15079 192 LDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL-GHAVELGTY 246 (331)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 799999999999999987 4999999999986 66788999999998 999999987
No 108
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=97.66 E-value=6.9e-05 Score=63.41 Aligned_cols=54 Identities=22% Similarity=0.182 Sum_probs=47.9
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHh-hhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEA-FDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~-fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++++.|+|||+++|++. .+... +|++++|.+ |++++.|+.
T Consensus 176 LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~-g~i~~~g~~ 230 (248)
T PRK09580 176 LDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ-GRIVKSGDF 230 (248)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEEC-CeEEEeCCH
Confidence 7999999999999999888999999999986 34444 899999997 999999987
No 109
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.65 E-value=5.7e-05 Score=63.93 Aligned_cols=53 Identities=15% Similarity=0.120 Sum_probs=48.5
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 175 LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 227 (247)
T TIGR00972 175 LDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYD-GELVEYGPT 227 (247)
T ss_pred CCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 799999999999999987 489999999986 67788999999998 999999987
No 110
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.65 E-value=5.8e-05 Score=63.68 Aligned_cols=54 Identities=13% Similarity=0.079 Sum_probs=49.4
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++++ .|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 162 LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (241)
T PRK14250 162 LDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNK-GILVEYAKT 216 (241)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeC-CEEEEeCCH
Confidence 799999999999999987 5999999999986 57788999999998 999999987
No 111
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=97.65 E-value=7.3e-05 Score=63.43 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=48.0
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHh-hhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEA-FDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~-fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|++++++|+|||+++|++.. +.+. +|++++|.+ |++++.|++
T Consensus 182 LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 236 (252)
T CHL00131 182 LDIDALKIIAEGINKLMTSENSIILITHYQRL-LDYIKPDYVHVMQN-GKIIKTGDA 236 (252)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHhhhCCEEEEEeC-CEEEEecCh
Confidence 79999999999999998889999999999753 4444 799999997 999999988
No 112
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=97.65 E-value=5.4e-05 Score=64.42 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=49.1
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++++ .|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 171 LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 225 (254)
T PRK10418 171 LDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSH-GRIVEQGDV 225 (254)
T ss_pred cCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 799999999999999987 5899999999986 56688999999998 999999987
No 113
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.65 E-value=5.9e-05 Score=64.01 Aligned_cols=53 Identities=11% Similarity=0.169 Sum_probs=48.2
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++.+ |+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 180 LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 232 (251)
T PRK14244 180 LDPVATNVIENLIQELKK-NFTIIVVTHSMK-QAKKVSDRVAFFQS-GRIVEYNTT 232 (251)
T ss_pred CCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEeCCH
Confidence 799999999999999964 899999999986 67788999999998 999999887
No 114
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.64 E-value=5.8e-05 Score=63.14 Aligned_cols=54 Identities=13% Similarity=0.124 Sum_probs=49.4
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+..++.+.|+++++ .|+|||+++|++. ++.+.+|+++++.+ |+++..|+.
T Consensus 162 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-g~i~~~~~~ 216 (230)
T TIGR03410 162 IQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMER-GRVVASGAG 216 (230)
T ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 799999999999999987 4899999999985 67778999999998 999999998
No 115
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=97.64 E-value=6.5e-05 Score=64.19 Aligned_cols=54 Identities=31% Similarity=0.453 Sum_probs=49.4
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..++..+.+.|+++++ .|.|||+++|++. .+.+.+|++++|.+ |++++.|++
T Consensus 183 LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-g~i~~~g~~ 237 (262)
T PRK09984 183 LDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIVALRQ-GHVFYDGSS 237 (262)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 799999999999999987 5899999999986 56788999999998 999999987
No 116
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.64 E-value=8.1e-05 Score=62.90 Aligned_cols=64 Identities=25% Similarity=0.324 Sum_probs=57.3
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhhC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLL 70 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~~ 70 (265)
||-.++..+.+.||+..+ .+.||+.|+|.-+ ++-..||+|+++++ |+++|.|+- +++.+-|...
T Consensus 187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~~-Gqlv~dg~l----~~l~~~f~~~ 251 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLIDQ-GQLVFDGTL----AQLQEQFGPY 251 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEeeC-CcEeecccH----HHHHHHhCCc
Confidence 688899999999999987 6999999999986 89999999999999 999999999 7887766543
No 117
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.64 E-value=5.4e-05 Score=63.49 Aligned_cols=54 Identities=19% Similarity=0.215 Sum_probs=49.1
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++++ .|+|||+++|++. ++.+.+|++++|.+ |++...|+.
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~-G~~~~~~~~ 215 (232)
T cd03300 161 LDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNK-GKIQQIGTP 215 (232)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 799999999999999987 4999999999985 57788999999998 999998876
No 118
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.64 E-value=5.4e-05 Score=67.49 Aligned_cols=54 Identities=22% Similarity=0.297 Sum_probs=50.4
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+..++.+.|+++.+ .|.|+|+++|++. ++.+++|++++|.+ |+++..|++
T Consensus 167 LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~-G~i~~~g~~ 221 (351)
T PRK11432 167 LDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNK-GKIMQIGSP 221 (351)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 799999999999999987 4999999999985 78899999999998 999999998
No 119
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=97.64 E-value=5.7e-05 Score=64.78 Aligned_cols=54 Identities=17% Similarity=0.205 Sum_probs=49.1
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+...+.+.|+++++ .|.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 180 LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 234 (267)
T PRK15112 180 LDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQ-GEVVERGST 234 (267)
T ss_pred CCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 799999999999999987 4999999999985 67778999999998 999998887
No 120
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.64 E-value=5.7e-05 Score=63.72 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=48.5
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 174 LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~~~~~~~~ 226 (242)
T TIGR03411 174 MTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQ-GSVLAEGSL 226 (242)
T ss_pred CCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEEC-CeEEeeCCH
Confidence 799999999999999976 799999999986 67788999999998 999999987
No 121
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.63 E-value=5.6e-05 Score=67.48 Aligned_cols=54 Identities=17% Similarity=0.219 Sum_probs=50.2
Q ss_pred CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++++. |+|+|+++|++. ++.+++|++++|.+ |+++..|++
T Consensus 159 LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 213 (352)
T PRK11144 159 LDLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQ-GKVKAFGPL 213 (352)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeC-CEEEEecCH
Confidence 7999999999999999875 899999999985 78899999999998 999999998
No 122
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.63 E-value=5.8e-05 Score=65.17 Aligned_cols=53 Identities=25% Similarity=0.302 Sum_probs=48.2
Q ss_pred CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+..++++.|++++++ |+|||+++|++. ++ ..+|++++|.+ |+++..|++
T Consensus 171 LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~-G~i~~~g~~ 224 (279)
T PRK13650 171 LDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKN-GQVESTSTP 224 (279)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEEECCH
Confidence 7999999999999999984 999999999986 44 57999999998 999999988
No 123
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.63 E-value=6e-05 Score=67.42 Aligned_cols=54 Identities=20% Similarity=0.250 Sum_probs=49.9
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++.++.+.|+++.+ .|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 160 LD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~-G~iv~~g~~ 214 (363)
T TIGR01186 160 LDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKA-GEIVQVGTP 214 (363)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEeeCCH
Confidence 799999999999999987 5999999999986 57889999999998 999999987
No 124
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.63 E-value=6.4e-05 Score=64.52 Aligned_cols=53 Identities=25% Similarity=0.304 Sum_probs=47.7
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+...+.+.|+++++ .|+|||+++|++. ++.. +|++++|.+ |+++..|++
T Consensus 173 LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~~-~d~i~~l~~-G~i~~~g~~ 226 (269)
T PRK13648 173 LDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAME-ADHVIVMNK-GTVYKEGTP 226 (269)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHhc-CCEEEEEEC-CEEEEecCH
Confidence 799999999999999987 4899999999986 4444 999999998 999999987
No 125
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.63 E-value=6.8e-05 Score=63.06 Aligned_cols=52 Identities=25% Similarity=0.373 Sum_probs=47.1
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++.++.+.|+++. +|+|||+++|++. ++ +.+|++++|.+ |++++.|+.
T Consensus 170 LD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~~-G~i~~~~~~ 221 (238)
T cd03249 170 LDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQN-GQVVEQGTH 221 (238)
T ss_pred CCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEEC-CEEEEeCCH
Confidence 79999999999999997 7999999999986 34 47999999998 999999987
No 126
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.63 E-value=6e-05 Score=63.95 Aligned_cols=53 Identities=13% Similarity=0.004 Sum_probs=48.5
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 178 LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 230 (251)
T PRK14270 178 LDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFLM-GDLIEFNKT 230 (251)
T ss_pred CCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEEC-CeEEEeCCH
Confidence 799999999999999976 689999999985 67788999999998 999999987
No 127
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.62 E-value=6e-05 Score=67.73 Aligned_cols=54 Identities=20% Similarity=0.254 Sum_probs=50.1
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+..++.+.|+++.+ .|.|+|+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 164 LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~-G~i~~~g~~ 218 (369)
T PRK11000 164 LDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKP 218 (369)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 799999999999999987 4999999999985 78899999999998 999999998
No 128
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.62 E-value=6.7e-05 Score=63.63 Aligned_cols=53 Identities=17% Similarity=0.136 Sum_probs=48.3
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++..+.+.|+++++ |+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 177 LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 229 (250)
T PRK14247 177 LDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYK-GQIVEWGPT 229 (250)
T ss_pred CCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEEC-CeEEEECCH
Confidence 799999999999999965 899999999986 67788999999998 999999987
No 129
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.62 E-value=7.5e-05 Score=62.76 Aligned_cols=52 Identities=23% Similarity=0.418 Sum_probs=47.0
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++++ |+|||+++|++. ++ +.+|++++|.+ |++++.|++
T Consensus 169 LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v~~l~~-G~i~~~~~~ 220 (237)
T cd03252 169 LDYESEHAIMRNMHDICA-GRTVIIIAHRLS-TV-KNADRIIVMEK-GRIVEQGSH 220 (237)
T ss_pred CCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEEEC-CEEEEEcCH
Confidence 799999999999999975 899999999996 34 56999999998 999999987
No 130
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=97.62 E-value=6.9e-05 Score=63.58 Aligned_cols=53 Identities=15% Similarity=0.018 Sum_probs=48.4
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++.+ ++|||+++|++. ++.+.+|++++|.+ |+++..|+.
T Consensus 179 LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 231 (252)
T PRK14239 179 LDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFLD-GDLIEYNDT 231 (252)
T ss_pred cCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 799999999999999965 689999999986 67788999999998 999999987
No 131
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.61 E-value=6.5e-05 Score=63.67 Aligned_cols=53 Identities=13% Similarity=0.032 Sum_probs=48.5
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 176 LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 228 (249)
T PRK14253 176 LDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLM-GELVEHDDT 228 (249)
T ss_pred CCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 799999999999999976 589999999985 67888999999998 999999987
No 132
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.61 E-value=7e-05 Score=63.48 Aligned_cols=53 Identities=19% Similarity=0.201 Sum_probs=48.3
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 177 LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 229 (250)
T PRK14262 177 LDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYR-GELIEYGPT 229 (250)
T ss_pred cCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 799999999999999975 789999999986 57788999999998 999999987
No 133
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.61 E-value=7.4e-05 Score=63.72 Aligned_cols=54 Identities=26% Similarity=0.301 Sum_probs=49.0
Q ss_pred CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|++++++ |.|||+++|++. .+.+.+|++++|.+ |++++.|++
T Consensus 182 LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 236 (258)
T PRK11701 182 LDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRLLVMKQ-GRVVESGLT 236 (258)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 7999999999999999874 899999999985 56678999999998 999999987
No 134
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.61 E-value=7.2e-05 Score=63.31 Aligned_cols=53 Identities=11% Similarity=0.108 Sum_probs=48.3
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++.+ |+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 173 LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 225 (246)
T PRK14269 173 LDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHL-GELIEFGES 225 (246)
T ss_pred CCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEEC-CEEEEECCH
Confidence 799999999999999975 899999999985 57788999999998 999999987
No 135
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.61 E-value=7.3e-05 Score=63.57 Aligned_cols=53 Identities=11% Similarity=0.004 Sum_probs=48.2
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+++.|+++++ +.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 181 LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 233 (254)
T PRK14273 181 LDPISTGKIEELIINLKE-SYTIIIVTHNMQ-QAGRISDRTAFFLN-GCIEEESST 233 (254)
T ss_pred cCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 799999999999999964 799999999986 56788999999998 999999987
No 136
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.60 E-value=8e-05 Score=64.32 Aligned_cols=53 Identities=26% Similarity=0.325 Sum_probs=48.0
Q ss_pred CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++..+++.|++++++ |+|||+++|++.. +. .+|++++|.+ |++++.|++
T Consensus 171 LD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~~-~~d~i~~l~~-G~i~~~g~~ 224 (279)
T PRK13635 171 LDPRGRREVLETVRQLKEQKGITVLSITHDLDE-AA-QADRVIVMNK-GEILEEGTP 224 (279)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-HH-cCCEEEEEEC-CEEEEECCH
Confidence 7999999999999999985 9999999999864 44 5999999998 999999987
No 137
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.60 E-value=7.5e-05 Score=63.70 Aligned_cols=53 Identities=11% Similarity=0.060 Sum_probs=48.5
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..++..+.+.|+++.+ ++|+|+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 186 LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 238 (259)
T PRK14274 186 LDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYM-GELVECNDT 238 (259)
T ss_pred CCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 799999999999999975 799999999986 67788999999998 999999998
No 138
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.60 E-value=7.4e-05 Score=63.45 Aligned_cols=54 Identities=22% Similarity=0.280 Sum_probs=49.1
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+...+.+.|+++++ .|.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 179 LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~l~~-G~i~~~~~~ 233 (253)
T TIGR02323 179 LDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLVMQQ-GRVVESGLT 233 (253)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEECCH
Confidence 799999999999999987 5999999999985 67778999999998 999999987
No 139
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.60 E-value=6.3e-05 Score=70.50 Aligned_cols=54 Identities=19% Similarity=0.319 Sum_probs=50.0
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..++..+++.|+++++.|.|||+++|++. .+.+.+|++++|.+ |++++.|++
T Consensus 176 LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 229 (510)
T PRK09700 176 LTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKD-GSSVCSGMV 229 (510)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEeeecch
Confidence 7999999999999999888999999999975 66788999999998 999999988
No 140
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.60 E-value=7.3e-05 Score=63.50 Aligned_cols=53 Identities=17% Similarity=0.119 Sum_probs=48.0
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++.+ |+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 180 LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 232 (253)
T PRK14242 180 LDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYM-GKLIEVGPT 232 (253)
T ss_pred CCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 799999999999999954 799999999986 56788999999998 999999887
No 141
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.59 E-value=7.4e-05 Score=64.11 Aligned_cols=53 Identities=8% Similarity=0.098 Sum_probs=48.2
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..++..+.+.|+++++ +.|||+++|++. ++.+.+|++++|.+ |++++.|++
T Consensus 195 LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 247 (268)
T PRK14248 195 LDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFLN-GDLVEYDQT 247 (268)
T ss_pred cCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 799999999999999965 689999999985 67788999999998 999999987
No 142
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.59 E-value=7.7e-05 Score=63.30 Aligned_cols=53 Identities=11% Similarity=0.075 Sum_probs=48.2
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++++ ++|||+++|++. .+.+.+|++++|.+ |+++..|++
T Consensus 179 LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 231 (252)
T PRK14272 179 LDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFLV-GDLVEHGPT 231 (252)
T ss_pred CCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 799999999999999975 799999999986 67788999999998 999999987
No 143
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.59 E-value=7.4e-05 Score=67.19 Aligned_cols=54 Identities=19% Similarity=0.208 Sum_probs=50.4
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+..++.+.|+++.+ .|.|+|+++|++. ++.+++|++++|.+ |+++..|++
T Consensus 175 LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~-G~i~~~g~~ 229 (375)
T PRK09452 175 LDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRD-GRIEQDGTP 229 (375)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 799999999999999988 5999999999985 78899999999998 999999998
No 144
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=97.58 E-value=7.5e-05 Score=64.23 Aligned_cols=53 Identities=15% Similarity=0.065 Sum_probs=48.4
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++++ +.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 199 LD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 251 (272)
T PRK14236 199 LDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYM-GKLVEYGDT 251 (272)
T ss_pred CCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEEC-CEEEecCCH
Confidence 799999999999999986 789999999985 57788999999998 999999987
No 145
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.58 E-value=9.3e-05 Score=68.75 Aligned_cols=61 Identities=11% Similarity=0.118 Sum_probs=53.6
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHH
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYF 67 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF 67 (265)
||+.+...+++.|+++++.|+|||+++|++. ++.+.+|++++|.+ |+++..|++ +++.+-+
T Consensus 174 LD~~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~-GkIv~~G~~----~el~~~~ 234 (549)
T PRK13545 174 GDQTFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHY-GQVKEYGDI----KEVVDHY 234 (549)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCH----HHHHhhH
Confidence 7999999999999999888999999999985 67788999999998 999999988 6655433
No 146
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=97.57 E-value=6.3e-05 Score=64.55 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=49.2
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++++ .|.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 182 LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~-G~i~~~g~~ 236 (268)
T PRK10419 182 LDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDN-GQIVETQPV 236 (268)
T ss_pred cCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEEC-CEEeeeCCh
Confidence 799999999999999987 4899999999985 67778999999997 999999988
No 147
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.57 E-value=0.00014 Score=60.56 Aligned_cols=63 Identities=16% Similarity=0.146 Sum_probs=56.6
Q ss_pred chHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhhC
Q 039187 2 DARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLL 70 (265)
Q Consensus 2 D~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~~ 70 (265)
|+.=..+..+.++++.++++|||++.|++. .+-+.||+++.|.+ |++.+.|.+ +++.++++..
T Consensus 179 D~~F~~K~~~rl~e~~~~~~tiv~VSHd~~-~I~~~Cd~~i~l~~-G~i~~~G~~----~~vi~~Y~~~ 241 (249)
T COG1134 179 DAAFQEKCLERLNELVEKNKTIVLVSHDLG-AIKQYCDRAIWLEH-GQIRMEGSP----EEVIPAYEED 241 (249)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhcCeeEEEeC-CEEEEcCCH----HHHHHHHHHh
Confidence 677778899999999888899999999986 68899999999998 999999999 8999888653
No 148
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=97.57 E-value=8.8e-05 Score=63.62 Aligned_cols=53 Identities=15% Similarity=0.033 Sum_probs=48.5
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++.+ +.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 194 LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 246 (267)
T PRK14237 194 LDPISTMQLEETMFELKK-NYTIIIVTHNMQ-QAARASDYTAFFYL-GDLIEYDKT 246 (267)
T ss_pred CCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 799999999999999964 789999999986 67889999999998 999999998
No 149
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.56 E-value=8.1e-05 Score=69.76 Aligned_cols=54 Identities=19% Similarity=0.254 Sum_probs=50.1
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+...+.+.|++++++|.|||+++|++. .+.+.+|++++|.+ |++++.|++
T Consensus 171 LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 224 (510)
T PRK15439 171 LTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRD-GTIALSGKT 224 (510)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCh
Confidence 7999999999999999888999999999986 56788999999998 999999987
No 150
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.56 E-value=0.00011 Score=63.07 Aligned_cols=54 Identities=11% Similarity=0.102 Sum_probs=49.2
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+..++++.|+++++.|+|||+++|++. ++.+.+|++++|.+ |+++..|+.
T Consensus 174 LD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~-G~i~~~g~~ 227 (264)
T PRK13546 174 GDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEG-GKLKDYGEL 227 (264)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEEC-CEEEEeCCH
Confidence 7999999999999999878999999999975 66788999999998 999999987
No 151
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.56 E-value=8.5e-05 Score=66.86 Aligned_cols=54 Identities=15% Similarity=0.165 Sum_probs=50.2
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++.++.+.|+++.+ .|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 195 LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~-G~iv~~g~~ 249 (382)
T TIGR03415 195 LDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEG-GRIIQHGTP 249 (382)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 799999999999999987 4999999999986 67899999999998 999999998
No 152
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=97.55 E-value=8.2e-05 Score=64.29 Aligned_cols=53 Identities=21% Similarity=0.287 Sum_probs=48.0
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++++ .|+|||+++|++.. +.. +|++++|.+ |+++..|++
T Consensus 175 LD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~~-~d~v~~l~~-G~i~~~g~~ 228 (280)
T PRK13633 175 LDPSGRREVVNTIKELNKKYGITIILITHYMEE-AVE-ADRIIVMDS-GKVVMEGTP 228 (280)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hhc-CCEEEEEEC-CEEEEecCH
Confidence 799999999999999987 59999999999974 444 999999998 999999988
No 153
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.55 E-value=9.3e-05 Score=62.83 Aligned_cols=53 Identities=11% Similarity=0.075 Sum_probs=48.3
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++++ +.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 179 LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 231 (252)
T PRK14256 179 LDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYM-GDLVECGET 231 (252)
T ss_pred CCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEEC-CEEEEeCCH
Confidence 799999999999999976 689999999985 67788999999997 999999987
No 154
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=97.54 E-value=0.0007 Score=65.35 Aligned_cols=53 Identities=17% Similarity=0.298 Sum_probs=48.7
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..++..+.+.|+++.++|+|+++++|++. ..+.+|++++|.+ |+++..|++
T Consensus 175 LD~~s~~~l~~ll~~l~~~g~tilivsH~~~--~~~~~d~i~~l~~-G~i~~~g~~ 227 (648)
T PRK10535 175 LDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ--VAAQAERVIEIRD-GEIVRNPPA 227 (648)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEECCCHH--HHHhCCEEEEEEC-CEEEeecCc
Confidence 7999999999999999878999999999986 3467999999998 999999998
No 155
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=97.53 E-value=0.0001 Score=69.48 Aligned_cols=54 Identities=13% Similarity=0.164 Sum_probs=49.4
Q ss_pred CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++..+.+.|++++++ |.|||+++|++. .+.+.+|++++|.+ |++++.|++
T Consensus 187 LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri~~l~~-G~i~~~g~~ 241 (529)
T PRK15134 187 LDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRVAVMQN-GRCVEQNRA 241 (529)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 7999999999999999875 999999999986 56688999999998 999999987
No 156
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.53 E-value=9.6e-05 Score=68.93 Aligned_cols=54 Identities=15% Similarity=0.089 Sum_probs=50.0
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+..++.+.|+++++.|.|||+++|++. .+.+.+|++++|.+ |+++..|++
T Consensus 166 LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 219 (490)
T PRK10938 166 LDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVLAD-CTLAETGER 219 (490)
T ss_pred CCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEEEC-CEEEEeCCH
Confidence 7999999999999999888999999999985 67788999999998 999999987
No 157
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=97.52 E-value=0.00011 Score=62.18 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=48.0
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++.+ ++|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 177 LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 229 (250)
T PRK14240 177 LDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFLN-GEIVEFGDT 229 (250)
T ss_pred CCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEEC-CEEEEeCCH
Confidence 799999999999999964 899999999975 67788999999998 999999887
No 158
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.51 E-value=0.00011 Score=66.60 Aligned_cols=54 Identities=20% Similarity=0.222 Sum_probs=49.7
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+..++.+.|+++.+ .|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 195 LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~-G~i~~~g~~ 249 (400)
T PRK10070 195 LDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQN-GEVVQVGTP 249 (400)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEecCCH
Confidence 799999999999999986 5999999999986 67789999999998 999999987
No 159
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.50 E-value=0.00011 Score=68.79 Aligned_cols=54 Identities=13% Similarity=0.180 Sum_probs=50.4
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+...+.+.|+++++.|.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 436 LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~-G~i~~~~~~ 489 (506)
T PRK13549 436 IDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHE-GKLKGDLIN 489 (506)
T ss_pred cCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEecc
Confidence 7999999999999999988999999999985 67789999999998 999999988
No 160
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.50 E-value=0.00013 Score=62.90 Aligned_cols=53 Identities=11% Similarity=0.048 Sum_probs=48.4
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhcc---------CCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMK---------QGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~---------~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++++ +.|||+++|++. ++.+.+|++++|+ + |+++..|++
T Consensus 192 LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~~~~~~~~~~-G~~~~~g~~ 253 (274)
T PRK14265 192 LDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFNTEIDEYGKRR-GKLVEFSPT 253 (274)
T ss_pred CCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEecccccccccC-ceEEEeCCH
Confidence 799999999999999975 789999999985 6778899999997 5 999999998
No 161
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.49 E-value=0.00011 Score=68.74 Aligned_cols=54 Identities=13% Similarity=0.252 Sum_probs=50.0
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+..++.+.|+++++.|.|||+++|++. ++.+.+|++++|.+ |++++.|++
T Consensus 174 LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 227 (506)
T PRK13549 174 LTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRD-GRHIGTRPA 227 (506)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEEC-CEEeeeccc
Confidence 7999999999999999888999999999986 66788999999998 999999998
No 162
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.49 E-value=0.00013 Score=62.74 Aligned_cols=53 Identities=19% Similarity=0.327 Sum_probs=47.7
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+...+.+.|++++++|+|||+++|++. ++.+.+|+++++ + |+++..|++
T Consensus 173 LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~-G~i~~~g~~ 225 (272)
T PRK15056 173 VDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-K-GTVLASGPT 225 (272)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeecCH
Confidence 7999999999999999888999999999985 677889999777 6 899999987
No 163
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=97.49 E-value=0.00012 Score=62.79 Aligned_cols=53 Identities=17% Similarity=0.117 Sum_probs=48.0
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++++ +.|||+++|++. .+.+.+|++++|.+ |+++..|++
T Consensus 194 LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 246 (267)
T PRK14235 194 LDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFHL-GNLVEVGDT 246 (267)
T ss_pred CCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEEC-CEEEEeCCH
Confidence 799999999999999976 789999999986 56788999999998 999999987
No 164
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.49 E-value=0.00012 Score=63.24 Aligned_cols=53 Identities=15% Similarity=0.261 Sum_probs=48.3
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..++..+.+.|+++++ .|.|||+++|++.. + ..+|++++|.+ |+++..|++
T Consensus 174 LD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~-G~i~~~g~~ 227 (282)
T PRK13640 174 LDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDD-GKLLAQGSP 227 (282)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEEC-CEEEEeCCH
Confidence 799999999999999987 49999999999974 4 57999999998 999999998
No 165
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.49 E-value=0.00013 Score=62.36 Aligned_cols=53 Identities=19% Similarity=0.110 Sum_probs=47.9
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++.+ +.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 187 LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 239 (260)
T PRK10744 187 LDPISTGRIEELITELKQ-DYTVVIVTHNMQ-QAARCSDYTAFMYL-GELIEFGNT 239 (260)
T ss_pred CCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 799999999999999964 789999999985 56788999999998 999999987
No 166
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.48 E-value=0.00015 Score=61.83 Aligned_cols=54 Identities=20% Similarity=0.154 Sum_probs=48.8
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++++ .|.|||+++|++. ++.+.+|++++|.+ |++++.|+.
T Consensus 164 LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 218 (257)
T PRK11247 164 LDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEE-GKIGLDLTV 218 (257)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeccc
Confidence 799999999999999976 5899999999986 56788999999998 999998876
No 167
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.48 E-value=0.00013 Score=64.53 Aligned_cols=53 Identities=15% Similarity=0.082 Sum_probs=48.2
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+...+.+.|+++.+ ++|||+++|++. .+.+.+|++++|.+ |+++..|++
T Consensus 256 LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~-G~i~e~g~~ 308 (329)
T PRK14257 256 LDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQ-GWIEEAGET 308 (329)
T ss_pred CCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 799999999999999976 799999999985 56677999999998 999999998
No 168
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=97.48 E-value=0.00012 Score=62.85 Aligned_cols=53 Identities=11% Similarity=-0.001 Sum_probs=48.3
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|++ |+++..|++
T Consensus 198 LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~~-G~i~~~g~~ 250 (271)
T PRK14238 198 LDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFLN-GYVNEYDDT 250 (271)
T ss_pred CCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 799999999999999976 799999999986 56788999999998 999999987
No 169
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.48 E-value=0.00015 Score=68.61 Aligned_cols=53 Identities=21% Similarity=0.389 Sum_probs=48.7
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++.++.+.|+++...|+|+|+++|+++ ..+.+|++++|.+ |+++..|+.
T Consensus 485 LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~-G~i~~~g~~ 537 (544)
T TIGR01842 485 LDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQD-GRIARFGER 537 (544)
T ss_pred cCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEEC-CEEEeeCCH
Confidence 7999999999999999767999999999985 4678999999998 999999987
No 170
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.47 E-value=0.00013 Score=68.17 Aligned_cols=54 Identities=26% Similarity=0.382 Sum_probs=50.1
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++.++.+.|+++++.|.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 172 LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 225 (501)
T PRK10762 172 LTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRD-GQFIAEREV 225 (501)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEecCc
Confidence 7999999999999999888999999999985 67788999999998 999999998
No 171
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.47 E-value=0.00013 Score=61.11 Aligned_cols=52 Identities=21% Similarity=0.329 Sum_probs=46.4
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++++ |+|||+++|++. ++ ..+|++++|.+ |+++..|+.
T Consensus 169 LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~v~~l~~-G~i~~~~~~ 220 (234)
T cd03251 169 LDTESERLVQAALERLMK-NRTTFVIAHRLS-TI-ENADRIVVLED-GKIVERGTH 220 (234)
T ss_pred CCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HH-hhCCEEEEecC-CeEeeeCCH
Confidence 799999999999999975 899999999996 44 44999999998 899998887
No 172
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.46 E-value=0.00012 Score=70.23 Aligned_cols=54 Identities=15% Similarity=0.124 Sum_probs=50.0
Q ss_pred CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..++.++++.|++++++ |.|||+++|++. .+.+.+|++++|.+ |+++..|++
T Consensus 494 LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~-G~iv~~g~~ 548 (623)
T PRK10261 494 LDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYL-GQIVEIGPR 548 (623)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 7999999999999999874 999999999986 67788999999998 999999998
No 173
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.46 E-value=0.00018 Score=60.46 Aligned_cols=53 Identities=25% Similarity=0.335 Sum_probs=47.3
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+...+.+.|+++++ +|+|||+++|++.. + ..+|++++|.+ |+++..|++
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~i~~l~~-G~i~~~~~~ 216 (236)
T TIGR03864 163 LDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-I-EADDRLVVLHR-GRVLADGAA 216 (236)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-H-hhCCEEEEEeC-CeEEEeCCH
Confidence 799999999999999986 69999999999964 4 35999999998 999998887
No 174
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.46 E-value=0.00015 Score=61.61 Aligned_cols=53 Identities=13% Similarity=0.048 Sum_probs=47.9
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++. ++.|||+++|++. ++.+.+|++++|.+ |++++.|++
T Consensus 178 LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 230 (251)
T PRK14249 178 LDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLT-GDLVEYGRT 230 (251)
T ss_pred CCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeC-CeEEEeCCH
Confidence 79999999999999995 5899999999986 56688999999998 999999987
No 175
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.45 E-value=0.00015 Score=61.51 Aligned_cols=53 Identities=15% Similarity=0.132 Sum_probs=48.2
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++++ |+|||+++|++. ++.+.+|+++++.+ |+++..|++
T Consensus 177 LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~-G~i~~~g~~ 229 (250)
T PRK14266 177 LDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLN-GEIIESGLT 229 (250)
T ss_pred CCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEEC-CeEEEeCCH
Confidence 799999999999999965 899999999985 67888999999998 999999987
No 176
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.45 E-value=0.00016 Score=61.87 Aligned_cols=53 Identities=15% Similarity=0.100 Sum_probs=47.7
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhcc--------CCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMK--------QGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~--------~gg~~~y~G~~ 56 (265)
||+.+..++.+.|+++.+ ++|||+++|++. ++.+.+|++++|. + |+++..|++
T Consensus 180 LD~~~~~~l~~~l~~~~~-~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~~~~-G~i~~~g~~ 240 (261)
T PRK14263 180 LDPIATRRVEELMVELKK-DYTIALVTHNMQ-QAIRVADTTAFFSVDISQGTRT-GYLVEMGPT 240 (261)
T ss_pred CCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEecccccccCC-ceEEEeCCH
Confidence 799999999999999964 789999999986 5778899999996 5 999999987
No 177
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.44 E-value=0.00014 Score=68.29 Aligned_cols=54 Identities=15% Similarity=0.221 Sum_probs=49.6
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+..++++.|+++++ .|.|||+++|++. .+.+.+|++++|.+ |+++..|++
T Consensus 458 LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 512 (520)
T TIGR03269 458 MDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMRD-GKIVKIGDP 512 (520)
T ss_pred CCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 799999999999999987 4999999999986 67788999999998 999999987
No 178
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.44 E-value=0.00017 Score=61.87 Aligned_cols=54 Identities=13% Similarity=0.046 Sum_probs=47.8
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC----------CCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ----------GRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~----------gg~~~y~G~~ 56 (265)
||+.+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|.+ +|+++..|++
T Consensus 185 LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~ 248 (269)
T PRK14259 185 LDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNET 248 (269)
T ss_pred CCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEeccccccccccccceEEEeCCH
Confidence 799999999999999965 789999999985 67889999999995 2678999988
No 179
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.44 E-value=0.00015 Score=62.77 Aligned_cols=53 Identities=11% Similarity=0.095 Sum_probs=48.1
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 213 LD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~~-G~i~~~g~~ 265 (286)
T PRK14275 213 LDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFYE-GVLVEHAPT 265 (286)
T ss_pred CCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 799999999999999975 689999999986 56788999999998 999999987
No 180
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.43 E-value=0.00016 Score=65.08 Aligned_cols=54 Identities=19% Similarity=0.263 Sum_probs=50.0
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+..++.+.|+++.+ .|.|+|+++|++. ++..++|++++|.+ |+++..|++
T Consensus 180 LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~-G~i~~~g~~ 234 (377)
T PRK11607 180 LDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNR-GKFVQIGEP 234 (377)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeC-CEEEEEcCH
Confidence 799999999999999977 5999999999986 78899999999998 999999998
No 181
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.43 E-value=0.00017 Score=62.18 Aligned_cols=57 Identities=12% Similarity=0.252 Sum_probs=49.1
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR 65 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~ 65 (265)
||+.+...+.+.|+++. .++|||+++|++. .+. .+|++++|.+ |+++..|++ +++..
T Consensus 169 LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~-~~dri~vl~~-G~i~~~g~~----~~l~~ 225 (275)
T cd03289 169 LDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AML-ECQRFLVIEE-NKVRQYDSI----QKLLN 225 (275)
T ss_pred CCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HHH-hCCEEEEecC-CeEeecCCH----HHHhh
Confidence 79999999999999875 4899999999984 454 5999999998 999999999 66654
No 182
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.43 E-value=0.00016 Score=67.64 Aligned_cols=54 Identities=11% Similarity=0.124 Sum_probs=50.4
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|++++++|.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 426 LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~~~~ 479 (501)
T PRK10762 426 VDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHE-GRISGEFTR 479 (501)
T ss_pred CCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecc
Confidence 7999999999999999888999999999985 67889999999998 999999988
No 183
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.43 E-value=0.00023 Score=58.99 Aligned_cols=62 Identities=13% Similarity=0.114 Sum_probs=51.6
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhh
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKL 69 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~ 69 (265)
||+.++..+.+.|.+..+ ++++|+++|++. ++.+.+|++++|.+ |++++.|+. +++.++++.
T Consensus 135 lD~~~~~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~----~~~~~~~~~ 196 (213)
T PRK15177 135 GDNATQLRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLLH-GKITMCEDL----AQATALFEQ 196 (213)
T ss_pred CCHHHHHHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEEC-CeEEEeCCH----HHHHHHHHH
Confidence 588889999998865443 568999999986 56778999999998 999999999 888887754
No 184
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.42 E-value=0.00017 Score=61.19 Aligned_cols=53 Identities=17% Similarity=0.108 Sum_probs=47.8
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+...+.+.|+++.+ +.|||+++|++. ++.+.+|++++|.+ |+++..|+.
T Consensus 178 LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 230 (251)
T PRK14251 178 LDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLMN-GDLIEAGPT 230 (251)
T ss_pred CCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEEC-CEEEEeCCH
Confidence 799999999999999964 789999999986 57788999999998 999999887
No 185
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=97.42 E-value=0.00015 Score=68.36 Aligned_cols=54 Identities=9% Similarity=0.149 Sum_probs=49.5
Q ss_pred CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..++.++++.|++++++ |.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 456 LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 510 (529)
T PRK15134 456 LDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQ-GEVVEQGDC 510 (529)
T ss_pred cCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEEEcCH
Confidence 7999999999999999874 999999999985 57788999999998 999999987
No 186
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.41 E-value=0.00016 Score=61.44 Aligned_cols=53 Identities=17% Similarity=0.065 Sum_probs=47.9
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 180 LD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 232 (253)
T PRK14261 180 LDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYL-GKLIEFDKT 232 (253)
T ss_pred CCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEEC-CEEEEcCCH
Confidence 799999999999999976 689999999986 56688999999998 999999987
No 187
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.41 E-value=0.00018 Score=61.00 Aligned_cols=53 Identities=13% Similarity=0.065 Sum_probs=48.1
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++..+.+.|+++++ +.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 179 LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 231 (252)
T PRK14255 179 LDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFLT-GNLIEFADT 231 (252)
T ss_pred CCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 799999999999999976 589999999985 67788999999998 999999987
No 188
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=97.40 E-value=0.00019 Score=61.23 Aligned_cols=53 Identities=11% Similarity=0.102 Sum_probs=47.5
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhcc------CCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMK------QGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~------~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++++ ++|||+++|++. ++.+.+|+++++. + |+++..|++
T Consensus 179 LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~~~~~~~~-g~i~~~~~~ 237 (258)
T PRK14241 179 LDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFNLEATGKP-GRLVEIDDT 237 (258)
T ss_pred CCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccCCCC-ceEEecCCH
Confidence 799999999999999965 689999999986 5778899999997 5 999999987
No 189
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.40 E-value=0.00019 Score=61.30 Aligned_cols=54 Identities=17% Similarity=0.084 Sum_probs=48.3
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC----CCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ----GRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~----gg~~~y~G~~ 56 (265)
||+.+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|.. .|+++..|++
T Consensus 181 LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~ 238 (259)
T PRK14260 181 LDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFSTDESRIGQMVEFGVT 238 (259)
T ss_pred CCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEeccCCCCceEEEeCCH
Confidence 799999999999999975 699999999986 77889999999972 3899999998
No 190
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.40 E-value=0.00018 Score=67.13 Aligned_cols=54 Identities=24% Similarity=0.372 Sum_probs=50.1
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+..++.+.|+++++.|.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 165 LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 218 (491)
T PRK10982 165 LTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRD-GQWIATQPL 218 (491)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEeecCh
Confidence 7999999999999999888999999999985 67788999999998 999999987
No 191
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.39 E-value=0.00016 Score=60.06 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=49.5
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
|.+..+.++++.++++.+ .|.||+++-|+.. -+++++|+|++|+. |+++..|+|
T Consensus 180 ln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~-G~~IAeG~P 234 (250)
T COG0411 180 LNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNY-GEVIAEGTP 234 (250)
T ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccC-CcCcccCCH
Confidence 456778999999999998 5799999999986 69999999999998 999999999
No 192
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.39 E-value=0.0002 Score=61.78 Aligned_cols=53 Identities=19% Similarity=0.177 Sum_probs=48.4
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++++ +.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 194 LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~-G~i~~~g~~ 246 (276)
T PRK14271 194 LDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFD-GRLVEEGPT 246 (276)
T ss_pred CCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 799999999999999976 589999999985 67788999999998 999999987
No 193
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.38 E-value=0.00023 Score=66.85 Aligned_cols=60 Identities=22% Similarity=0.262 Sum_probs=52.1
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHH
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRY 66 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~y 66 (265)
||+.+...+.+.|+++++ .|.|||+++|++. .+.+.+|++++|.+ |++++.|++ ++..+.
T Consensus 199 LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~----~~~~~~ 259 (520)
T TIGR03269 199 LDPQTAKLVHNALEEAVKASGISMVLTSHWPE-VIEDLSDKAIWLEN-GEIKEEGTP----DEVVAV 259 (520)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEeC-CEEeeecCH----HHHHHH
Confidence 799999999999999976 5999999999986 46688999999998 899999887 555443
No 194
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.37 E-value=0.00023 Score=60.98 Aligned_cols=53 Identities=17% Similarity=0.122 Sum_probs=48.1
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|.+ |+++..|+.
T Consensus 192 LD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 244 (265)
T PRK14252 192 LDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTAYMYM-GELIEFGAT 244 (265)
T ss_pred CCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 799999999999999976 689999999985 67788999999998 999999987
No 195
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=97.36 E-value=0.0002 Score=66.96 Aligned_cols=55 Identities=16% Similarity=0.315 Sum_probs=50.3
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLG 57 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~ 57 (265)
||+.+...+.+.|+++++.|.|||+++|++. ++.+.+|++++|.+ |+++..|++.
T Consensus 172 LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 226 (500)
T TIGR02633 172 LTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRD-GQHVATKDMS 226 (500)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CeEeeecCcc
Confidence 7999999999999999888999999999985 67788999999998 8999999873
No 196
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.36 E-value=0.0003 Score=58.73 Aligned_cols=52 Identities=19% Similarity=0.374 Sum_probs=46.1
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+++.|+++. .|+|||+++|++. ++ +.+|++++|.+ |++++.|+.
T Consensus 170 LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~l~~-g~~~~~~~~ 221 (229)
T cd03254 170 IDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADKILVLDD-GKIIEEGTH 221 (229)
T ss_pred CCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEEeC-CeEEEeCCH
Confidence 79999999999999996 4899999999986 34 56999999998 999998876
No 197
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.36 E-value=0.00016 Score=65.89 Aligned_cols=62 Identities=18% Similarity=0.270 Sum_probs=56.1
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhh
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKL 69 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~ 69 (265)
||+.....+.+.+.++.++|.|+|+++|.|+ +....|+|++|++ |++.-+||+ +++......
T Consensus 503 LD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~~-G~~~~FG~r----~eVLa~~~~ 564 (580)
T COG4618 503 LDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVLQD-GRIAAFGPR----EEVLAKVLR 564 (580)
T ss_pred cchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceeeeecC-ChHHhcCCH----HHHHHHhcC
Confidence 7999999999999999999999999999985 7899999999997 999999999 777776643
No 198
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=97.36 E-value=0.00022 Score=61.03 Aligned_cols=53 Identities=9% Similarity=0.031 Sum_probs=48.2
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhcc---------CCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMK---------QGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~---------~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|+ + |+++..|++
T Consensus 182 LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~~~~~~~-g~i~~~~~~ 243 (264)
T PRK14243 182 LDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELTEGGGRY-GYLVEFDRT 243 (264)
T ss_pred CCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccccccccC-ceEEEeCCH
Confidence 799999999999999976 589999999985 7889999999998 6 899999987
No 199
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.35 E-value=0.00026 Score=60.87 Aligned_cols=53 Identities=15% Similarity=0.196 Sum_probs=47.5
Q ss_pred CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..++..+++.|++++++ ++|||+++|++.. + ..+|++++|.+ |+++..|++
T Consensus 173 LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l~~-G~i~~~g~~ 226 (271)
T PRK13632 173 LDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVFSE-GKLIAQGKP 226 (271)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEEEC-CEEEEecCH
Confidence 7999999999999999875 5999999999964 4 47999999998 999999987
No 200
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.34 E-value=0.00026 Score=66.39 Aligned_cols=54 Identities=15% Similarity=0.244 Sum_probs=49.8
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+++.|+++++.|.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 440 LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 493 (510)
T PRK09700 440 IDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCE-GRLTQILTN 493 (510)
T ss_pred cCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecC
Confidence 7999999999999999888999999999985 67788999999998 899998876
No 201
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.34 E-value=0.00022 Score=66.89 Aligned_cols=54 Identities=17% Similarity=0.115 Sum_probs=50.2
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++++.|.|||+++|++. ++.+.+|++++|.+ |+++..|.+
T Consensus 434 LD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~-G~i~~~~~~ 487 (510)
T PRK15439 434 VDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQ-GEISGALTG 487 (510)
T ss_pred cChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEcc
Confidence 7999999999999999988999999999985 68889999999997 999998877
No 202
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.33 E-value=0.00026 Score=67.42 Aligned_cols=52 Identities=17% Similarity=0.276 Sum_probs=47.3
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++.++++.|+++. .++|+|+++|++ +..+.+|+|++|++ |+++..|+.
T Consensus 511 LD~~t~~~i~~~l~~~~-~~~tvI~VtHr~--~~~~~~D~Ii~l~~-g~i~e~g~~ 562 (582)
T PRK11176 511 LDTESERAIQAALDELQ-KNRTSLVIAHRL--STIEKADEILVVED-GEIVERGTH 562 (582)
T ss_pred CCHHHHHHHHHHHHHHh-CCCEEEEEecch--HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 79999999999999985 479999999998 45788999999998 999999997
No 203
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.33 E-value=0.00025 Score=66.33 Aligned_cols=55 Identities=13% Similarity=0.138 Sum_probs=50.9
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLG 57 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~ 57 (265)
||..+..++++.|+++++.|.|||+++|++. ++.+.+|+++++.+ |++++.|.++
T Consensus 427 LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~-g~i~~~~~~~ 481 (501)
T PRK11288 427 IDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMRE-GRIAGELARE 481 (501)
T ss_pred CCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEEC-CEEEEEEccc
Confidence 7999999999999999988999999999985 67889999999998 9999999883
No 204
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.32 E-value=0.00016 Score=69.35 Aligned_cols=54 Identities=17% Similarity=0.267 Sum_probs=49.3
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..++.++.++|+++++ .|.|||+++|++. .+.+.+|++++|.+ |+++..|++
T Consensus 199 LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~~~~adri~vl~~-G~i~~~g~~ 253 (623)
T PRK10261 199 LDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VVAEIADRVLVMYQ-GEAVETGSV 253 (623)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEeeC-CeecccCCH
Confidence 799999999999999987 4999999999985 56788999999998 999998887
No 205
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.32 E-value=0.00033 Score=56.30 Aligned_cols=65 Identities=15% Similarity=0.233 Sum_probs=50.4
Q ss_pred CchHHHHHHHHHHHHHhhCC-CeEEEEecCCCHHHHHhhhhhhhccCCCeEEEe--cCCCCCcchHHHHH
Q 039187 1 LDARAASIVIRTVRNTVDTG-RTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYV--GLLGRHSCHLTRYF 67 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~-~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~--G~~~~~~~~~~~yF 67 (265)
||..+...+.+.++++++++ .|||+++|++. ++.+.+|++++|.+ +-.+|. |+++..-+.+-.|+
T Consensus 102 LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-~~~~~~~~~~~~~~~~~~~~~~ 169 (177)
T cd03222 102 LDIEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEG-EPGVYGIASQPKGTREGINRFL 169 (177)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcC-CCccceeccCCcchhHHHHHHH
Confidence 79999999999999998764 99999999984 56678999999997 566654 77743323444455
No 206
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.31 E-value=0.00028 Score=60.88 Aligned_cols=53 Identities=19% Similarity=0.246 Sum_probs=47.9
Q ss_pred CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+...+.+.|+++++. |.|||+++|++.. + ..+|++++|.+ |+++..|++
T Consensus 171 LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~-~~~d~i~~l~~-G~i~~~g~~ 224 (277)
T PRK13642 171 LDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-A-ASSDRILVMKA-GEIIKEAAP 224 (277)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEEC-CEEEEeCCH
Confidence 7999999999999999885 9999999999875 4 35999999998 999999987
No 207
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=97.30 E-value=0.00027 Score=75.28 Aligned_cols=62 Identities=26% Similarity=0.332 Sum_probs=57.2
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHh
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFK 68 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~ 68 (265)
||+.++.++.+.|++++++|+|||+|+|++. ++..++|++++|.+ |+++..|++ +++.+.|.
T Consensus 2101 LDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~-G~i~~~Gs~----q~Lk~~~g 2162 (2272)
T TIGR01257 2101 MDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVK-GAFQCLGTI----QHLKSKFG 2162 (2272)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH----HHHHHHhC
Confidence 7999999999999999888999999999985 78889999999998 999999999 88887774
No 208
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.29 E-value=0.00028 Score=59.25 Aligned_cols=52 Identities=23% Similarity=0.365 Sum_probs=46.6
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++.+ |+|||+++|++.. + ..+|++++|.+ |+++..|+.
T Consensus 168 LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~-~-~~~d~~~~l~~-g~i~~~~~~ 219 (236)
T cd03253 168 LDTHTEREIQAALRDVSK-GRTTIVIAHRLST-I-VNADKIIVLKD-GRIVERGTH 219 (236)
T ss_pred CCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEEC-CEEEeeCCH
Confidence 799999999999999987 9999999999863 4 45999999998 999998876
No 209
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.29 E-value=0.0003 Score=67.14 Aligned_cols=52 Identities=21% Similarity=0.381 Sum_probs=47.1
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++.++.+.|+++. +++|+|+++|+++ ..+.+|+|++|.+ |+++..|+.
T Consensus 516 LD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~-G~i~e~G~~ 567 (588)
T PRK11174 516 LDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQD-GQIVQQGDY 567 (588)
T ss_pred CCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeC-CeEeecCCH
Confidence 79999999999999985 5899999999994 5678999999998 999999987
No 210
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.29 E-value=0.00032 Score=59.81 Aligned_cols=53 Identities=11% Similarity=0.184 Sum_probs=48.0
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++.+ +.|||+++|++. .+.+.+|++++|.+ |+++..|++
T Consensus 184 LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~-g~i~~~g~~ 236 (257)
T PRK14246 184 IDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYN-GELVEWGSS 236 (257)
T ss_pred CCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 799999999999999965 699999999985 67788999999997 999999987
No 211
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.26 E-value=0.00037 Score=66.55 Aligned_cols=52 Identities=13% Similarity=0.251 Sum_probs=47.4
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+..++.+.|+++.+ ++|+|+++|+| +....+|+|++|.+ |+++..|+.
T Consensus 507 LD~~t~~~i~~~l~~~~~-~~tvIivtHr~--~~l~~~D~ii~l~~-G~i~~~G~~ 558 (592)
T PRK10790 507 IDSGTEQAIQQALAAVRE-HTTLVVIAHRL--STIVEADTILVLHR-GQAVEQGTH 558 (592)
T ss_pred CCHHHHHHHHHHHHHHhC-CCEEEEEecch--HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 799999999999999865 79999999998 45678999999998 999999998
No 212
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.23 E-value=0.00046 Score=57.91 Aligned_cols=54 Identities=17% Similarity=0.243 Sum_probs=50.3
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+-+..++=+-++++-+ .|+|||.++|+.. |.+.+.|+|.+|+. |+++-.|.|
T Consensus 166 LDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~~-G~i~Q~~~P 220 (309)
T COG1125 166 LDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMDA-GEIVQYDTP 220 (309)
T ss_pred cChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEecC-CeEEEeCCH
Confidence 799999999999999987 6999999999986 78899999999997 999999998
No 213
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.22 E-value=0.00041 Score=67.51 Aligned_cols=57 Identities=18% Similarity=0.325 Sum_probs=50.5
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR 65 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~ 65 (265)
||+.+..++.+.|+++.+ ++|+|+++|+++ ..+.+|+|++|.+ |+++..|+. +++.+
T Consensus 632 LD~~te~~i~~~l~~~~~-~~T~iiItHrl~--~~~~~D~iivl~~-G~i~e~G~~----~eLl~ 688 (694)
T TIGR03375 632 MDNRSEERFKDRLKRWLA-GKTLVLVTHRTS--LLDLVDRIIVMDN-GRIVADGPK----DQVLE 688 (694)
T ss_pred CCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEeC-CEEEeeCCH----HHHHH
Confidence 799999999999999864 899999999995 4688999999998 999999998 66654
No 214
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.21 E-value=0.00037 Score=59.21 Aligned_cols=53 Identities=11% Similarity=0.147 Sum_probs=47.0
Q ss_pred CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+...+.+.|++++++ |.|||+++|++. ++.+.+|++++|. ++++..|++
T Consensus 151 LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~--~~i~~~g~~ 204 (251)
T PRK09544 151 VDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLN--HHICCSGTP 204 (251)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEC--CceEeeCCH
Confidence 7999999999999999875 899999999986 6778899999995 368888987
No 215
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.21 E-value=0.00044 Score=67.27 Aligned_cols=52 Identities=27% Similarity=0.443 Sum_probs=47.1
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+..++++.|+++. .++|+|+++|+++ ..+.+|++++|++ |+++..|+.
T Consensus 624 LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~~-G~i~~~g~~ 675 (694)
T TIGR01846 624 LDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLEK-GQIAESGRH 675 (694)
T ss_pred CCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEeC-CEEEEeCCH
Confidence 79999999999999985 5899999999985 4567999999998 999999997
No 216
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.21 E-value=0.00043 Score=59.01 Aligned_cols=52 Identities=21% Similarity=0.282 Sum_probs=46.0
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+...+.+.|+++. .+.|||+++|++.. +. .+|++++|.+ |+++..|++
T Consensus 187 LD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~-~~-~~dri~~l~~-G~i~~~g~~ 238 (257)
T cd03288 187 IDMATENILQKVVMTAF-ADRTVVTIAHRVST-IL-DADLVLVLSR-GILVECDTP 238 (257)
T ss_pred CCHHHHHHHHHHHHHhc-CCCEEEEEecChHH-HH-hCCEEEEEEC-CEEEEeCCH
Confidence 79999999999999975 48999999999974 44 4999999998 999999987
No 217
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=97.21 E-value=0.00087 Score=53.25 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=51.5
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHH
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLT 64 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~ 64 (265)
||-+....+-..|.+++..|.+||++-|+.+. ..+..|++.+|++ |+++.+|.+ +++.
T Consensus 163 LDvAQ~~aLdrll~~~c~~G~~vims~HDLNh-TLrhA~~~wLL~r-G~l~~~G~~----~eVl 220 (248)
T COG4138 163 LDVAQQSALDRLLSALCQQGLAIVMSSHDLNH-TLRHAHRAWLLKR-GKLLASGRR----EEVL 220 (248)
T ss_pred hhHHHHHHHHHHHHHHHhCCcEEEEeccchhh-HHHHHHHHHHHhc-CeEEeecch----hhhc
Confidence 67777888889999999999999999999984 5688999999999 999999999 5554
No 218
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.20 E-value=0.00034 Score=67.70 Aligned_cols=57 Identities=23% Similarity=0.385 Sum_probs=51.1
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR 65 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~ 65 (265)
||+.+..++++.|+++.. |+|+|+++|.++ ..+.+|+|++|.+ |+++..|+. +++..
T Consensus 640 LD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~--ti~~adrIiVl~~-Gkiv~~gs~----~ell~ 696 (709)
T COG2274 640 LDPETEAIILQNLLQILQ-GRTVIIIAHRLS--TIRSADRIIVLDQ-GKIVEQGSH----EELLA 696 (709)
T ss_pred cCHhHHHHHHHHHHHHhc-CCeEEEEEccch--HhhhccEEEEccC-CceeccCCH----HHHHH
Confidence 799999999999999875 799999999986 5788999999998 999999998 66654
No 219
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.20 E-value=0.00041 Score=67.39 Aligned_cols=50 Identities=20% Similarity=0.333 Sum_probs=45.6
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+..++.+.|+++ ++|+|+++|+++ ..+.+|+|++|++ |+++..|+.
T Consensus 619 LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~-G~iv~~G~~ 668 (686)
T TIGR03797 619 LDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDA-GRVVQQGTY 668 (686)
T ss_pred CCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEEC-CEEEEECCH
Confidence 7999999999999986 689999999984 5678999999998 999999998
No 220
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=97.18 E-value=0.00044 Score=64.68 Aligned_cols=54 Identities=9% Similarity=0.128 Sum_probs=49.7
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..++..+++.|+++++.|.|||+++|++. ++.+.+|++++|.+ |+++..++.
T Consensus 434 LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~-G~i~~~~~~ 487 (500)
T TIGR02633 434 VDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGE-GKLKGDFVN 487 (500)
T ss_pred cCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEcc
Confidence 7999999999999999888999999999985 67889999999998 899988876
No 221
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.17 E-value=0.00047 Score=60.35 Aligned_cols=53 Identities=17% Similarity=0.137 Sum_probs=46.8
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhh-hhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDEL-FLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~-~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++++ +.|||+++|++. .+.+.+|++ ++|.+ |+++..|++
T Consensus 231 LD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d~i~~~l~~-G~i~~~g~~ 284 (305)
T PRK14264 231 LDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISDQTAVFLTG-GELVEYDDT 284 (305)
T ss_pred CCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcCEEEEEecC-CEEEEeCCH
Confidence 799999999999999987 489999999986 567889996 56787 999999987
No 222
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.17 E-value=0.0006 Score=58.09 Aligned_cols=55 Identities=22% Similarity=0.146 Sum_probs=48.6
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccC-CCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQ-GRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~-gg~~~y~G~~ 56 (265)
||+.+...+.+.|+++++ .|+|||+++|++. ++.+.+|++++|.+ +|+++..++.
T Consensus 159 LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 159 LDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 799999999999999965 6999999999986 67788999999983 3899988876
No 223
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.15 E-value=0.00052 Score=64.25 Aligned_cols=54 Identities=24% Similarity=0.321 Sum_probs=48.7
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++++.|+|||+++|++. ++.+.+|++++|.+ |+++..++.
T Consensus 171 LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 224 (501)
T PRK11288 171 LSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD-GRYVATFDD 224 (501)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeecCc
Confidence 7999999999999999888999999999986 66788999999998 899877664
No 224
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=97.14 E-value=0.00057 Score=64.92 Aligned_cols=57 Identities=19% Similarity=0.343 Sum_probs=49.5
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR 65 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~ 65 (265)
||+.+...+.+.++++. +|+|+++..|+++ .+ ..+|+|++|.+ |+++..|.. +++..
T Consensus 496 lD~~tE~~I~~~l~~l~-~~rT~iiIaHRls-ti-~~aD~IiVl~~-G~i~e~G~h----~eLl~ 552 (567)
T COG1132 496 LDTETEALIQDALKKLL-KGRTTLIIAHRLS-TI-KNADRIIVLDN-GRIVERGTH----EELLA 552 (567)
T ss_pred cCHHhHHHHHHHHHHHh-cCCEEEEEeccHh-HH-HhCCEEEEEEC-CEEEEecCH----HHHHH
Confidence 79999999999999887 5789999999995 34 44999999998 999999998 66654
No 225
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.12 E-value=0.00061 Score=64.79 Aligned_cols=52 Identities=23% Similarity=0.360 Sum_probs=47.1
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+..++.+.|+++. +|+|+|+++|+++ ..+.+|++++|.+ |+++..|+.
T Consensus 482 LD~~~~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~~-G~i~~~g~~ 533 (569)
T PRK10789 482 VDGRTEHQILHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQH-GHIAQRGNH 533 (569)
T ss_pred CCHHHHHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEeC-CEEEEecCH
Confidence 79999999999999985 5899999999984 4577999999998 999999987
No 226
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.10 E-value=0.00069 Score=64.48 Aligned_cols=52 Identities=25% Similarity=0.365 Sum_probs=46.9
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+..++.+.|+++. +++|+|+++|+++. .+.+|++++|.+ |+++..|+.
T Consensus 506 lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~--~~~~d~i~~l~~-G~i~~~g~~ 557 (574)
T PRK11160 506 LDAETERQILELLAEHA-QNKTVLMITHRLTG--LEQFDRICVMDN-GQIIEQGTH 557 (574)
T ss_pred CCHHHHHHHHHHHHHHc-CCCEEEEEecChhH--HHhCCEEEEEeC-CeEEEeCCH
Confidence 79999999999999986 48999999999963 467999999998 999999987
No 227
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.09 E-value=0.00064 Score=63.46 Aligned_cols=54 Identities=9% Similarity=0.119 Sum_probs=49.8
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+..++++.|+++.+.|.|||+++|++. ++.+.+|++++|.+ |+++..+++
T Consensus 422 LD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~-g~i~~~~~~ 475 (491)
T PRK10982 422 IDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSN-GLVAGIVDT 475 (491)
T ss_pred cChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEEC-CEEEEEEcc
Confidence 7999999999999999888999999999985 67789999999998 999988877
No 228
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.08 E-value=0.00064 Score=66.36 Aligned_cols=54 Identities=22% Similarity=0.335 Sum_probs=47.9
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHH
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLT 64 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~ 64 (265)
||+.+..++++.|++ .++|+|+++|+++ ....+|+|++|.+ |+++..|+. +++.
T Consensus 646 LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~-G~i~~~G~~----~~Ll 699 (710)
T TIGR03796 646 LDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLER-GKVVQRGTH----EELW 699 (710)
T ss_pred CCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeC-CEEEEecCH----HHHH
Confidence 799999999999987 5899999999985 4577999999998 999999998 6665
No 229
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.00067 Score=62.35 Aligned_cols=57 Identities=19% Similarity=0.298 Sum_probs=50.1
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR 65 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~ 65 (265)
||+.|..+++++|.+-++ |+|+|+++|.... .+.||+|++|.+ |+++..|.. +++..
T Consensus 505 LD~~TE~~vL~ll~~~~~-~kTll~vTHrL~~--le~~drIivl~~-Gkiie~G~~----~~Ll~ 561 (573)
T COG4987 505 LDPITERQVLALLFEHAE-GKTLLMVTHRLRG--LERMDRIIVLDN-GKIIEEGTH----AELLA 561 (573)
T ss_pred CChhhHHHHHHHHHHHhc-CCeEEEEeccccc--HhhcCEEEEEEC-CeeeecCCH----Hhhhc
Confidence 799999999999998775 9999999999863 588999999998 999999988 55543
No 230
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.06 E-value=0.00081 Score=64.16 Aligned_cols=52 Identities=21% Similarity=0.241 Sum_probs=46.4
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+..++.+.|+++. .++|+|+++|+++ ..+.+|++++|.+ |+++..|+.
T Consensus 502 LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~--~~~~~d~i~~l~~-G~i~~~g~~ 553 (585)
T TIGR01192 502 LDVETEARVKNAIDALR-KNRTTFIIAHRLS--TVRNADLVLFLDQ-GRLIEKGSF 553 (585)
T ss_pred CCHHHHHHHHHHHHHHh-CCCEEEEEEcChH--HHHcCCEEEEEEC-CEEEEECCH
Confidence 79999999999999884 5899999999984 3477999999998 999999986
No 231
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.05 E-value=0.00063 Score=63.13 Aligned_cols=54 Identities=17% Similarity=0.183 Sum_probs=50.3
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||...+.+++++|+++.+ .|.|.+.+.|+.. -+-.++|+|.+|.. |+++..||+
T Consensus 460 LDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~~-G~iVE~G~~ 514 (539)
T COG1123 460 LDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMYD-GRIVEEGPT 514 (539)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEEC-CeEEEeCCH
Confidence 799999999999999988 5999999999986 57788999999998 999999987
No 232
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.05 E-value=0.00062 Score=67.68 Aligned_cols=53 Identities=25% Similarity=0.332 Sum_probs=48.1
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhc------cCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLM------KQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l------~~gg~~~y~G~~ 56 (265)
||+.+..++++.|+++.+.|.|||++.|++. ....+|++++| . ||++++.|++
T Consensus 520 LD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~--~i~~aD~vi~LgpgaG~~-~G~Iv~~g~~ 578 (924)
T TIGR00630 520 LHQRDNERLINTLKRLRDLGNTVIVVEHDEE--TIRAADYVIDIGPGAGIH-GGEVVASGTP 578 (924)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCEEEEecccccCC-CCEEeeccCH
Confidence 7999999999999999889999999999975 34689999999 5 4999999998
No 233
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=97.04 E-value=0.00068 Score=72.43 Aligned_cols=60 Identities=18% Similarity=0.208 Sum_probs=53.7
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHH
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYF 67 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF 67 (265)
||+.++.++.+.|+++. +|+|||+++|++. ++...+|++++|++ |+++..|++ ..+++-|
T Consensus 1092 LDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~-GkL~~~Gs~----~~Lk~~~ 1151 (2272)
T TIGR01257 1092 VDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQ-GRLYCSGTP----LFLKNCF 1151 (2272)
T ss_pred CCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEecCH----HHHHHhc
Confidence 79999999999999995 5999999999985 67788999999998 999999998 7777655
No 234
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.01 E-value=0.00082 Score=58.22 Aligned_cols=53 Identities=17% Similarity=0.122 Sum_probs=46.1
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhh-hccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELF-LMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~-~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|+++++ +.|||+++|++. ++.+.+|+++ +|.+ |+++..|++
T Consensus 211 LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l~~-G~i~~~g~~ 264 (285)
T PRK14254 211 LDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFLTG-GELVEFDDT 264 (285)
T ss_pred CCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEeeC-CEEEEeCCH
Confidence 799999999999999986 489999999985 6677899975 5787 999999987
No 235
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=97.01 E-value=0.00084 Score=65.50 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=48.6
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHH
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLT 64 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~ 64 (265)
||+.+..++.+.|+++ +|+|+|+++|+++ ..+.+|+|++|++ |+++..|+. +++.
T Consensus 642 LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~-G~i~~~G~~----~~L~ 696 (708)
T TIGR01193 642 LDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDH-GKIIEQGSH----DELL 696 (708)
T ss_pred CCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEEC-CEEEEECCH----HHHH
Confidence 7999999999999985 5899999999985 5688999999998 999999998 5554
No 236
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=96.99 E-value=0.00081 Score=67.02 Aligned_cols=53 Identities=23% Similarity=0.307 Sum_probs=47.9
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhc------cCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLM------KQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l------~~gg~~~y~G~~ 56 (265)
||+....++.+.|+++.+.|.|||++.|++. ++ ..+|++++| .. |++++.|++
T Consensus 522 Ld~~~~~~L~~~L~~L~~~G~TVIvVeH~~~-~i-~~aD~vi~LgpgaG~~~-G~iv~~g~~ 580 (943)
T PRK00349 522 LHQRDNDRLIETLKHLRDLGNTLIVVEHDED-TI-RAADYIVDIGPGAGVHG-GEVVASGTP 580 (943)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEeccccCCCC-CEEeeccCH
Confidence 7999999999999999888999999999986 34 569999999 64 999999998
No 237
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.98 E-value=0.00099 Score=63.58 Aligned_cols=52 Identities=19% Similarity=0.309 Sum_probs=46.9
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++.++.+.|+++. .++|+|+++|+|+ ..+.+|++++|.+ |+++..|+.
T Consensus 502 LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l~~-G~i~~~g~~ 553 (588)
T PRK13657 502 LDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADRILVFDN-GRVVESGSF 553 (588)
T ss_pred CCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEEEC-CEEEEeCCH
Confidence 79999999999999885 4899999999984 5688999999998 999999986
No 238
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=96.93 E-value=0.0011 Score=63.03 Aligned_cols=52 Identities=21% Similarity=0.340 Sum_probs=47.0
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..++.++++.|++++ .++|+|+++|+| +..+.+|+|+.+.+ |+++-.|+.
T Consensus 500 LD~~~~~~i~~~L~~~~-~~~tiIiitH~~--~~~~~~D~ii~l~~-g~i~~~g~~ 551 (571)
T TIGR02203 500 LDNESERLVQAALERLM-QGRTTLVIAHRL--STIEKADRIVVMDD-GRIVERGTH 551 (571)
T ss_pred CCHHHHHHHHHHHHHHh-CCCEEEEEehhh--HHHHhCCEEEEEeC-CEEEeeCCH
Confidence 79999999999999885 579999999998 46788999999997 999998887
No 239
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=0.0012 Score=60.91 Aligned_cols=57 Identities=21% Similarity=0.431 Sum_probs=50.9
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR 65 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~ 65 (265)
||+.|..++++.+++ ..+|+|+|++.|.. ++...||+|++|.+ |++.-.|+. +++..
T Consensus 518 LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l--~ll~~~DkI~~l~n-G~v~e~gth----~ell~ 574 (591)
T KOG0057|consen 518 LDSETEREILDMIMD-VMSGRTVIMIVHRL--DLLKDFDKIIVLDN-GTVKEYGTH----SELLA 574 (591)
T ss_pred cchhhHHHHHHHHHH-hcCCCeEEEEEecc--hhHhcCCEEEEEEC-CeeEEeccH----HHHhh
Confidence 799999999999999 34699999999976 57889999999999 999999998 77765
No 240
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=96.91 E-value=0.0012 Score=62.78 Aligned_cols=52 Identities=23% Similarity=0.338 Sum_probs=46.8
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+++.|+++. .++|+|+++|++ +..+.+|+++.+.+ |+++..|+.
T Consensus 507 lD~~~~~~i~~~l~~~~-~~~t~IiitH~~--~~~~~~d~vi~l~~-g~~~~~g~~ 558 (576)
T TIGR02204 507 LDAESEQLVQQALETLM-KGRTTLIIAHRL--ATVLKADRIVVMDQ-GRIVAQGTH 558 (576)
T ss_pred cCHHHHHHHHHHHHHHh-CCCEEEEEecch--HHHHhCCEEEEEEC-CEEEeeecH
Confidence 79999999999999985 589999999998 45688999999998 999999987
No 241
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.88 E-value=0.03 Score=47.85 Aligned_cols=146 Identities=10% Similarity=0.064 Sum_probs=90.8
Q ss_pred hHHHHHHHHHHHHHHhhcChh-HHHHHHHHHHHHHHHHHHHhcCCCCCCCcChhhHHHhhhHHHHHHHH-----------
Q 039187 116 YFTQFMACLWKQWWSYWQNPA-YTAVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIIS----------- 183 (265)
Q Consensus 116 ~~~Q~~~L~~R~~~~~~R~~~-~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~~~g~l~~~~~~----------- 183 (265)
.++....|.+|+.|...|+.. ...=.++.++++.++.+.+|...-..+. ..--..-..|.+......
T Consensus 16 ~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~~-~~~~~~l~~G~~~w~f~~~~i~~~~~s~~ 94 (263)
T COG1682 16 YRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSPG-LNFLAYLLAGLILWFFFSEAISEGAGSVV 94 (263)
T ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchHHHHHHHHHHHHHHHHHHHhHHHHhh
Confidence 667788999999999886553 3444566666666666666654433211 111222222322111110
Q ss_pred ---------------HHHHHHHHHhhHHHHHHHHHHHHHhhccCccccccccee--------------------------
Q 039187 184 ---------------SAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFFR-------------------------- 222 (265)
Q Consensus 184 ---------------y~la~~~~~lp~~~~~~~i~~~i~y~~~g~~~~~~~~~~-------------------------- 222 (265)
+.+++++.++-...+...+...+.-+..+.+ +......
T Consensus 95 ~n~~li~k~~~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~-s~~~l~~~~~l~~l~l~~~g~~l~~a~l~v~fR 173 (263)
T COG1682 95 ANAALIKKINFPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP-SWHWLLLLPALLLLILFSVGLGLILASLGVRFR 173 (263)
T ss_pred hhHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcc
Confidence 6677777776666665555554444443333 3221111
Q ss_pred --------------eccccccCCCCCCcchhhhhhhcHHHHHHHHHhhhhcCCCC
Q 039187 223 --------------LIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLGMRR 263 (265)
Q Consensus 223 --------------l~sG~~~~~~~ip~~~~w~~~lsp~~y~~~al~~~ef~~~~ 263 (265)
..+|.+.+.+++|..++++..+||+.+-.|..=..-+++..
T Consensus 174 D~~~i~~~v~~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~~iie~~R~~~~~~~~ 228 (263)
T COG1682 174 DLGQILGVVLQLLFFLSPIIYPVSNLPEQLRELVLLNPLTHIIESFRAPLLGGDV 228 (263)
T ss_pred cHHHHHHHHHHHHHHhCceeeehhhccHHHHHHHHHCcHHHHHHHHHHHHhCCCc
Confidence 78899999999999999999999999999998776666554
No 242
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.87 E-value=0.0016 Score=55.15 Aligned_cols=69 Identities=16% Similarity=0.183 Sum_probs=50.9
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEE--EecCCCCCcchHHHHHhhCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEI--YVGLLGRHSCHLTRYFKLLL 71 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~--y~G~~~~~~~~~~~yF~~~g 71 (265)
||+.+...+.+.|+++++ .|+|||+++|++. .+...+|++++|.. +..+ ..+++....+.+..|++..+
T Consensus 146 LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~~ 217 (246)
T cd03237 146 LDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEG-EPSVNGVANPPQSLRSGMNRFLKNLD 217 (246)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcC-CCeeEEEeCCchHHHHHHHHHHHHCC
Confidence 799999999999999987 5899999999985 66778999999974 4333 33444211124556666655
No 243
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=96.87 E-value=0.0015 Score=65.15 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=48.2
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhcc-----CCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMK-----QGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~-----~gg~~~y~G~~ 56 (265)
||..+...+++.|+++.+.|.|||++.|++. ..+.+|+++.|. +||++++.|++
T Consensus 864 LD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~ 922 (943)
T PRK00349 864 LHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTP 922 (943)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCH
Confidence 7999999999999999888999999999984 346799999994 35999999998
No 244
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.86 E-value=0.0011 Score=56.97 Aligned_cols=54 Identities=30% Similarity=0.338 Sum_probs=49.6
Q ss_pred CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..-..++-+-|+++.++ |.|++.++|++. |+++++|+|++|++ |++.-.||+
T Consensus 168 LDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~-G~Ieqvg~p 222 (345)
T COG1118 168 LDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGPP 222 (345)
T ss_pred hhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecC-CeeeeeCCH
Confidence 6888888999999999885 999999999985 89999999999999 999999999
No 245
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=96.85 E-value=0.0013 Score=69.08 Aligned_cols=54 Identities=19% Similarity=0.326 Sum_probs=49.2
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhcc-----CCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMK-----QGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~-----~gg~~~y~G~~ 56 (265)
||+.+..++.+.|+++++.|.|||++.|++. +.+.+|++++|. .||++++.|++
T Consensus 509 LD~~~~~~L~~lL~~L~~~G~TVIvVeHd~~--vi~~aDrVi~L~pGag~~gG~Iv~~G~~ 567 (1809)
T PRK00635 509 LHPQDTHKLINVIKKLRDQGNTVLLVEHDEQ--MISLADRIIDIGPGAGIFGGEVLFNGSP 567 (1809)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH--HHHhCCEEEEEcCCcccCCCEEEEecCH
Confidence 7999999999999999988999999999985 679999999996 34899999987
No 246
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.0015 Score=60.67 Aligned_cols=52 Identities=17% Similarity=0.300 Sum_probs=47.4
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..+...+.+.|.++++ ++|+++++|++. .....|+|++|++ |+++..|..
T Consensus 487 LD~etE~~i~~~l~~l~~-~ktvl~itHrl~--~~~~~D~I~vld~-G~l~~~g~~ 538 (559)
T COG4988 487 LDAETEQIILQALQELAK-QKTVLVITHRLE--DAADADRIVVLDN-GRLVEQGTH 538 (559)
T ss_pred CCHhHHHHHHHHHHHHHh-CCeEEEEEcChH--HHhcCCEEEEecC-CceeccCCH
Confidence 799999999999999997 499999999985 4577999999998 999999987
No 247
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.77 E-value=0.0021 Score=55.64 Aligned_cols=52 Identities=10% Similarity=0.261 Sum_probs=43.8
Q ss_pred CchHHHHHHHHHH-HHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTV-RNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l-~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+...+.+.+ +++. .+.|||+++|++.. + ..+|++++|.+ |+++..|++
T Consensus 190 LD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~-~-~~~d~i~~l~~-G~i~~~g~~ 242 (282)
T cd03291 190 LDVFTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHE-GSSYFYGTF 242 (282)
T ss_pred CCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHH-H-HhCCEEEEEEC-CEEEEECCH
Confidence 7899999898865 5554 57999999999864 4 67999999998 999999997
No 248
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.73 E-value=0.0022 Score=63.87 Aligned_cols=54 Identities=20% Similarity=0.272 Sum_probs=48.2
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhcc-----CCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMK-----QGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~-----~gg~~~y~G~~ 56 (265)
||..+..++.+.|+++.+.|.|||++.|++. ..+.+|+++.|. +||++++.|++
T Consensus 862 LD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~--~i~~aD~ii~Lgp~~G~~gG~iv~~G~~ 920 (924)
T TIGR00630 862 LHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD--VIKTADYIIDLGPEGGDGGGTIVASGTP 920 (924)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEecCCccCCCCEEEEeCCH
Confidence 7999999999999999888999999999985 346799999994 35999999998
No 249
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.64 E-value=0.0027 Score=50.72 Aligned_cols=54 Identities=19% Similarity=0.290 Sum_probs=49.4
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.---++++.+++||+.|||.++++|...- .-+.-.+++.|.+ |.+-..|||
T Consensus 183 LDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~fLh~-G~iEE~G~P 236 (256)
T COG4598 183 LDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVIFLHQ-GKIEEEGPP 236 (256)
T ss_pred CCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheEEeec-ceecccCCh
Confidence 78888999999999999999999999999864 4577899999999 999999999
No 250
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.63 E-value=0.0016 Score=55.49 Aligned_cols=52 Identities=15% Similarity=0.123 Sum_probs=43.9
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGL 55 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~ 55 (265)
||..+...+.+.|++++++|+|||+++|++. .+.+.+|++++|. |++.+.|-
T Consensus 170 LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l~--~~~~~~~~ 221 (255)
T cd03236 170 LDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCLY--GEPGAYGV 221 (255)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEC--CCCCccee
Confidence 7999999999999999888999999999985 5667899999996 45665443
No 251
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=96.61 E-value=0.018 Score=48.83 Aligned_cols=39 Identities=21% Similarity=0.372 Sum_probs=35.2
Q ss_pred eccccccCCCCCCcchhhhhhhcHHHHHHHHHhhhhcCC
Q 039187 223 LIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLGM 261 (265)
Q Consensus 223 l~sG~~~~~~~ip~~~~w~~~lsp~~y~~~al~~~ef~~ 261 (265)
+++|.+.|.+.+|.|++|+.+++|.+|+.+++-.....+
T Consensus 213 ~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~ 251 (286)
T COG0842 213 FLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGG 251 (286)
T ss_pred HHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCC
Confidence 899999999999999999999999999999987655543
No 252
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=96.53 E-value=0.0032 Score=58.06 Aligned_cols=54 Identities=15% Similarity=0.289 Sum_probs=49.7
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
|+...+.++.+.+++|.++|.+||.+.|... |+++.+|++.+|.. |+.+-.++.
T Consensus 176 Lt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRD-G~~v~~~~~ 229 (500)
T COG1129 176 LTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRD-GRVVGTRPT 229 (500)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeC-CEEeeeccc
Confidence 5677889999999999999999999999985 99999999999998 999998883
No 253
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=96.50 E-value=0.0028 Score=61.93 Aligned_cols=55 Identities=25% Similarity=0.372 Sum_probs=45.1
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR 65 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~ 65 (265)
||+.+..++.+ .. ...++|+|+++|+++ ..+.+|+|++|++ |+++..|+. +++.+
T Consensus 648 LD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~-G~ive~Gt~----~eL~~ 702 (711)
T TIGR00958 648 LDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKK-GSVVEMGTH----KQLME 702 (711)
T ss_pred cCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEEC-CEEEEeeCH----HHHHh
Confidence 78988888888 22 236899999999985 4678999999998 999999998 66553
No 254
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=96.44 E-value=0.0035 Score=50.91 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=50.2
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
.||-+-.++-+.+++|.++|.-|++|=|.-+ |.++.+||.+++.+ |+++..|.+
T Consensus 170 VDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~G~p 223 (243)
T COG1137 170 VDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISD-GKVLAEGSP 223 (243)
T ss_pred CCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEec-CeEEecCCH
Confidence 4788888999999999999999999999986 78899999999998 999999999
No 255
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.0061 Score=50.48 Aligned_cols=63 Identities=19% Similarity=0.249 Sum_probs=54.6
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhh--hhhhhccCCCeEEEecCCCCCcchHHHHHhhCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAF--DELFLMKQGRQEIYVGLLGRHSCHLTRYFKLLL 71 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~f--d~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~~g 71 (265)
||-.+-..+.+.++.+.+.|++++++||+. ++.+.- |++.+|.+ |+++-.|.+ ++.++++.-|
T Consensus 175 LDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~-GrIv~sG~~-----el~~~le~~g 239 (251)
T COG0396 175 LDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYD-GRIVKSGDP-----ELAEELEEKG 239 (251)
T ss_pred ccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEEC-CEEEecCCH-----HHHHHHHHhc
Confidence 677778889999999999999999999986 678887 99999998 999999986 7777777665
No 256
>PLN03232 ABC transporter C family member; Provisional
Probab=96.42 E-value=0.0039 Score=65.66 Aligned_cols=56 Identities=20% Similarity=0.299 Sum_probs=48.9
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHH
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLT 64 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~ 64 (265)
||+.+...+.+.|++.. +++|+|++.|+++ ....+|+|++|++ |+++..|++ +++.
T Consensus 1402 LD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~~-G~ivE~Gt~----~eLl 1457 (1495)
T PLN03232 1402 VDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLSS-GQVLEYDSP----QELL 1457 (1495)
T ss_pred CCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEEC-CEEEEECCH----HHHH
Confidence 79999999999999874 5899999999985 3455999999998 999999999 6665
No 257
>PLN03130 ABC transporter C family member; Provisional
Probab=96.36 E-value=0.0041 Score=65.83 Aligned_cols=56 Identities=14% Similarity=0.277 Sum_probs=49.3
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHH
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLT 64 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~ 64 (265)
||+.|...+.+.|++.. +++|+|++.|+++. ...+|+|++|++ |+++..|++ +++.
T Consensus 1405 LD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~t--I~~~DrIlVLd~-G~IvE~Gt~----~eLl 1460 (1622)
T PLN03130 1405 VDVRTDALIQKTIREEF-KSCTMLIIAHRLNT--IIDCDRILVLDA-GRVVEFDTP----ENLL 1460 (1622)
T ss_pred CCHHHHHHHHHHHHHHC-CCCEEEEEeCChHH--HHhCCEEEEEEC-CEEEEeCCH----HHHH
Confidence 79999999999999975 48999999999864 455999999998 999999999 6765
No 258
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=96.36 E-value=0.0036 Score=58.99 Aligned_cols=51 Identities=8% Similarity=0.135 Sum_probs=44.7
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEE-EecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEI-YVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~-y~G~~ 56 (265)
||+.+...+.+.|+++ +.|||+++|++. .+.+.+|++++|.+ |+++ +.|+.
T Consensus 469 LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~-g~i~~~~g~~ 520 (530)
T PRK15064 469 MDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITP-DGVVDFSGTY 520 (530)
T ss_pred CCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEcCCCH
Confidence 7999999999999987 459999999985 67788999999998 8887 88876
No 259
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=96.30 E-value=0.0049 Score=65.06 Aligned_cols=57 Identities=14% Similarity=0.284 Sum_probs=49.2
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR 65 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~ 65 (265)
||+.|...+.+.|++.. +++|||++.|+++ ....+|+|++|++ |+++..|++ +++.+
T Consensus 1452 lD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld~-G~IvE~G~~----~eLl~ 1508 (1522)
T TIGR00957 1452 VDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLDK-GEVAEFGAP----SNLLQ 1508 (1522)
T ss_pred CCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC-CEEEEECCH----HHHHh
Confidence 79999999999999864 5899999999985 3556999999998 999999998 66653
No 260
>PTZ00243 ABC transporter; Provisional
Probab=96.25 E-value=0.005 Score=65.01 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=49.1
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHH
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLT 64 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~ 64 (265)
||+.+...+.+.|++.. +++|||++.|+++ ....+|+|++|++ |+++..|++ +++.
T Consensus 1477 LD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd~-G~VvE~Gt~----~eLl 1532 (1560)
T PTZ00243 1477 IDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMDH-GAVAEMGSP----RELV 1532 (1560)
T ss_pred CCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEEC-CEEEEECCH----HHHH
Confidence 79999999999999864 5899999999984 5677999999998 999999998 6664
No 261
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.22 E-value=0.0062 Score=51.68 Aligned_cols=54 Identities=17% Similarity=0.206 Sum_probs=50.2
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||...+.++.++|+++.+ .|-|.+..+|+.+ -+..++|++.+|.. |+++-.|+.
T Consensus 140 LDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~isdri~VMy~-G~iVE~g~~ 194 (268)
T COG4608 140 LDVSVQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDRIAVMYL-GKIVEIGPT 194 (268)
T ss_pred cchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhhcccEEEEec-CceeEecCH
Confidence 789999999999999998 5999999999987 56788999999998 999999998
No 262
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=96.20 E-value=0.006 Score=54.60 Aligned_cols=54 Identities=13% Similarity=0.270 Sum_probs=49.1
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||-.-+.+|+++||+|-+ .|..++..+|+.+ -+-++.|+|.+|.+ |+++..|.+
T Consensus 188 LDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~-iVr~~ADrV~VM~~-G~ivE~~~t 242 (534)
T COG4172 188 LDVTVQAQILDLLKELQAELGMAILFITHDLG-IVRKFADRVYVMQH-GEIVETGTT 242 (534)
T ss_pred hhhhhHHHHHHHHHHHHHHhCcEEEEEeccHH-HHHHhhhhEEEEec-cEEeecCcH
Confidence 688889999999999977 6999999999997 46788999999999 999999988
No 263
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=96.18 E-value=0.0058 Score=57.61 Aligned_cols=51 Identities=12% Similarity=0.144 Sum_probs=44.6
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeE-EEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQE-IYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~-~y~G~~ 56 (265)
||+.+...+.+.|++ .|.|||+++|++. .+.+.+|++++|.+ |++ ++.|+.
T Consensus 186 LD~~~~~~l~~~l~~---~~~tiiivsHd~~-~~~~~~d~i~~l~~-g~i~~~~g~~ 237 (530)
T PRK15064 186 LDINTIRWLEDVLNE---RNSTMIIISHDRH-FLNSVCTHMADLDY-GELRVYPGNY 237 (530)
T ss_pred cCHHHHHHHHHHHHh---CCCeEEEEeCCHH-HHHhhcceEEEEeC-CEEEEecCCH
Confidence 799999999999874 5899999999986 57788999999998 888 588887
No 264
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=96.15 E-value=0.0071 Score=58.43 Aligned_cols=59 Identities=24% Similarity=0.313 Sum_probs=51.8
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC-----CCeEEEecCCCCCcchHHH
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ-----GRQEIYVGLLGRHSCHLTR 65 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~-----gg~~~y~G~~~~~~~~~~~ 65 (265)
|......++++.|++|.+.|.|+|++-|++ ++...+|+|+=+.+ ||++++.|++ +++.+
T Consensus 514 LHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp----~~i~~ 577 (935)
T COG0178 514 LHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTP----EELLA 577 (935)
T ss_pred CChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCH----HHHHh
Confidence 456677899999999999999999999997 78899999999976 4899999999 66665
No 265
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.14 E-value=0.012 Score=46.32 Aligned_cols=54 Identities=17% Similarity=0.266 Sum_probs=47.6
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.-+.++++.+|+|+..|.|-++++|.-.. .-....+++.|.+ |+++..|..
T Consensus 172 ldpeitaqvv~iikel~~tgitqvivthev~v-a~k~as~vvyme~-g~ive~g~a 225 (242)
T COG4161 172 LDPEITAQIVSIIKELAETGITQVIVTHEVEV-ARKTASRVVYMEN-GHIVEQGDA 225 (242)
T ss_pred cCHHHHHHHHHHHHHHHhcCceEEEEEeehhH-HHhhhhheEeeec-CeeEeecch
Confidence 79999999999999999999999999997653 2355899999998 999999986
No 266
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.14 E-value=0.012 Score=48.32 Aligned_cols=53 Identities=13% Similarity=0.061 Sum_probs=48.4
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+-++.+|=+++.+|. ..-|||+++|.+. ...+.-|+..++.. |+++.+|++
T Consensus 180 LDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~~-G~LvE~g~T 232 (253)
T COG1117 180 LDPISTLKIEELITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFYL-GELVEFGPT 232 (253)
T ss_pred cCchhHHHHHHHHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhcc-cEEEEEcCH
Confidence 79999999999999997 5889999999986 45688999999998 999999999
No 267
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=96.12 E-value=0.0071 Score=55.23 Aligned_cols=53 Identities=15% Similarity=0.280 Sum_probs=47.1
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGL 55 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~ 55 (265)
|-+..+.++++.|+++++.|+|||..+|... |+.+.+|++-+|.+ |+++-.-+
T Consensus 171 LTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR~-Gkvvgt~~ 223 (501)
T COG3845 171 LTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLRR-GKVVGTVD 223 (501)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEeC-CeEEeeec
Confidence 3466789999999999999999999999986 89999999999998 88876655
No 268
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=96.12 E-value=0.01 Score=59.43 Aligned_cols=63 Identities=17% Similarity=0.163 Sum_probs=57.4
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhh
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKL 69 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~ 69 (265)
+|+.++.++.+.++++.++|+.||.|+|... |.-.+|||+.+|.+ |+....|++ ++++..|..
T Consensus 729 mDP~arr~lW~ii~~~~k~g~aiiLTSHsMe-E~EaLCtR~aImv~-G~l~ciGs~----q~LKsrfG~ 791 (885)
T KOG0059|consen 729 LDPKARRHLWDIIARLRKNGKAIILTSHSME-EAEALCTRTAIMVI-GQLRCIGSP----QELKSRYGS 791 (885)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHHhhhhheeec-CeeEEecCh----HHHHhhcCC
Confidence 6999999999999999998889999999864 77788999999998 999999999 999988843
No 269
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.06 E-value=0.0076 Score=53.45 Aligned_cols=54 Identities=22% Similarity=0.271 Sum_probs=49.2
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..-..++..-||++.+ .|.|.|.++|+.. |.+.+.|+|.+|++ |++.-.|+|
T Consensus 167 LD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~-G~I~Q~gtP 221 (352)
T COG3842 167 LDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMND-GRIEQVGTP 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccC-CceeecCCH
Confidence 688888899999999987 6999999999975 78899999999998 999999999
No 270
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=96.01 E-value=0.0083 Score=56.81 Aligned_cols=50 Identities=18% Similarity=0.208 Sum_probs=43.1
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEe
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYV 53 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~ 53 (265)
||+.+..++.+.|.+..+ .|+|+|+++|++ +..+.+|++++|.+ |+++..
T Consensus 480 LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~--~~~~~~d~i~~l~~-G~i~e~ 530 (547)
T PRK10522 480 QDPHFRREFYQVLLPLLQEMGKTIFAISHDD--HYFIHADRLLEMRN-GQLSEL 530 (547)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEEech--HHHHhCCEEEEEEC-CEEEEe
Confidence 799999999999987754 589999999998 45788999999998 787754
No 271
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.01 E-value=0.0072 Score=60.95 Aligned_cols=57 Identities=25% Similarity=0.356 Sum_probs=49.4
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR 65 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~ 65 (265)
||+.+...+.+.|.+.+ .|||.|++.|+.+ .| +-.|+|+++.+ |+++..|.+ +++++
T Consensus 520 LD~~se~~Vq~ALd~~~-~grTTivVaHRLS-tI-rnaD~I~v~~~-G~IvE~G~h----~ELi~ 576 (1228)
T KOG0055|consen 520 LDAESERVVQEALDKAS-KGRTTIVVAHRLS-TI-RNADKIAVMEE-GKIVEQGTH----DELIA 576 (1228)
T ss_pred cCHHHHHHHHHHHHHhh-cCCeEEEEeeehh-hh-hccCEEEEEEC-CEEEEecCH----HHHHh
Confidence 79999999999998765 4999999999986 34 44999999998 999999999 77765
No 272
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=96.00 E-value=0.0077 Score=63.46 Aligned_cols=56 Identities=14% Similarity=0.233 Sum_probs=48.8
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHH
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLT 64 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~ 64 (265)
||..+...+.+.|++.. .++|||++.|.++ ....+|+|++|.+ |+++-.|++ +++.
T Consensus 1384 lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~-G~ivE~g~p----~~Ll 1439 (1490)
T TIGR01271 1384 LDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEG-SSVKQYDSI----QKLL 1439 (1490)
T ss_pred CCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC-CEEEEeCCH----HHHH
Confidence 79999999999999864 4899999999985 4556999999998 999999998 6665
No 273
>PLN03232 ABC transporter C family member; Provisional
Probab=95.92 E-value=0.0097 Score=62.78 Aligned_cols=56 Identities=23% Similarity=0.324 Sum_probs=46.4
Q ss_pred CchHHHHHHHHH-HHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHH
Q 039187 1 LDARAASIVIRT-VRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLT 64 (265)
Q Consensus 1 LD~~~~~~~~~~-l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~ 64 (265)
||+.++.++++. ++.+ .+|+|+|+++|+++ ..+.+|+|++|.+ |+++..|+. +++.
T Consensus 771 LD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~~-G~i~~~Gt~----~eL~ 827 (1495)
T PLN03232 771 LDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLH--FLPLMDRIILVSE-GMIKEEGTF----AELS 827 (1495)
T ss_pred cCHHHHHHHHHHHhhhh-hcCCEEEEEECChh--hHHhCCEEEEEeC-CEEEEecCH----HHHH
Confidence 799999988765 4443 36899999999985 4688999999997 999999987 5654
No 274
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.91 E-value=0.0076 Score=50.50 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=41.2
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
||+.|..++-+.|.++.+ .++||+.++|+.. |...+.|+|++|++
T Consensus 161 LDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~ 206 (248)
T COG1116 161 LDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSN 206 (248)
T ss_pred hhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecC
Confidence 799999999999999988 6899999999996 66678999999998
No 275
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.0076 Score=54.12 Aligned_cols=57 Identities=23% Similarity=0.361 Sum_probs=49.2
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR 65 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~ 65 (265)
||+.|..++-..|++.+ .|+|.++..|..|. +.+ .|+|++|++ |+++..|.. ++++.
T Consensus 430 ldt~te~~iq~~l~~~~-~~rttlviahrlst-i~~-adeiivl~~-g~i~erg~h----~~ll~ 486 (497)
T COG5265 430 LDTHTEQAIQAALREVS-AGRTTLVIAHRLST-IID-ADEIIVLDN-GRIVERGTH----EELLA 486 (497)
T ss_pred hhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh-ccC-CceEEEeeC-CEEEecCcH----HHHHH
Confidence 79999999999999998 69999999999874 434 999999998 999999987 55554
No 276
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=95.84 E-value=0.01 Score=62.35 Aligned_cols=58 Identities=16% Similarity=0.263 Sum_probs=48.8
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCC---Ce-EEEecCCCCCcchHH
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQG---RQ-EIYVGLLGRHSCHLT 64 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~g---g~-~~y~G~~~~~~~~~~ 64 (265)
||+.+...|.+.|+++.+ +++|+|+++|+++ ..+.+|+|++|.+| |+ ++..|+. +++.
T Consensus 1389 LD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth----~eLl 1451 (1466)
T PTZ00265 1389 LDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTH----EELL 1451 (1466)
T ss_pred cCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCH----HHHH
Confidence 799999999999999974 6999999999984 46789999999973 67 4478987 5554
No 277
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=95.79 E-value=0.011 Score=62.42 Aligned_cols=54 Identities=17% Similarity=0.156 Sum_probs=48.6
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhcc-----CCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMK-----QGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~-----~gg~~~y~G~~ 56 (265)
||..+..++++.|+++++.|.|||+++|++. .+ +.+|++++|. .||+++..|++
T Consensus 843 LD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtp 901 (1809)
T PRK00635 843 LHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSP 901 (1809)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCH
Confidence 7999999999999999988999999999986 34 8999999996 24899999988
No 278
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.72 E-value=0.023 Score=46.46 Aligned_cols=51 Identities=12% Similarity=0.050 Sum_probs=43.5
Q ss_pred CchHHHHHHH-HHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEec
Q 039187 1 LDARAASIVI-RTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVG 54 (265)
Q Consensus 1 LD~~~~~~~~-~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G 54 (265)
||+.+...++ ..++++.+.|.++|+++|. .++.+.+|++..+.+ |++.+.+
T Consensus 121 lD~~~~~~i~~~~l~~l~~~~~~vi~~tH~--~~l~~~~d~~~~l~~-g~l~~~~ 172 (200)
T cd03280 121 TDPVEGAALAIAILEELLERGALVIATTHY--GELKAYAYKREGVEN-ASMEFDP 172 (200)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEECCH--HHHHHHHhcCCCeEE-EEEEEec
Confidence 6888888886 4788887789999999997 478899999999998 9998874
No 279
>PLN03130 ABC transporter C family member; Provisional
Probab=95.69 E-value=0.014 Score=61.94 Aligned_cols=56 Identities=21% Similarity=0.314 Sum_probs=46.3
Q ss_pred CchHHHHHHHH-HHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHH
Q 039187 1 LDARAASIVIR-TVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLT 64 (265)
Q Consensus 1 LD~~~~~~~~~-~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~ 64 (265)
||+.++.++++ .++.+. +|+|+|+++|+++ ..+.+|+|++|.+ |+++..|+. +++.
T Consensus 771 LD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~~-G~i~e~Gt~----~eL~ 827 (1622)
T PLN03130 771 LDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH--FLSQVDRIILVHE-GMIKEEGTY----EELS 827 (1622)
T ss_pred cCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh--HHHhCCEEEEEeC-CEEEEeCCH----HHHH
Confidence 79999988875 455543 6899999999984 5788999999998 999999997 6654
No 280
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=95.67 E-value=0.014 Score=52.36 Aligned_cols=54 Identities=15% Similarity=0.225 Sum_probs=48.7
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||-+-+.+++++||+|-+ .|-+=+...|+.. -+-.++|+|++|.+ |+++..||+
T Consensus 457 LD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~~-GkiVE~G~~ 511 (534)
T COG4172 457 LDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMRD-GKIVEQGPT 511 (534)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEeC-CEEeeeCCH
Confidence 677788999999999987 6999999999986 46678999999998 999999998
No 281
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.65 E-value=0.011 Score=52.13 Aligned_cols=54 Identities=20% Similarity=0.318 Sum_probs=49.6
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||.....++..-++++.+ .|.|+|-++|+.. |.+.+.|++.+|.+ |++.-.|.|
T Consensus 164 LDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~~-G~i~Q~g~p 218 (338)
T COG3839 164 LDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMND-GRIQQVGTP 218 (338)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEeC-CeeeecCCh
Confidence 788889999999999987 5999999999974 88999999999997 999999999
No 282
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=95.65 E-value=0.012 Score=54.36 Aligned_cols=54 Identities=15% Similarity=0.245 Sum_probs=46.4
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
.|-.+..++.++++++|++|++||+..-..+ |+..++|||++|.+ |+++-.=+.
T Consensus 432 IDVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~~-Gri~~e~~~ 485 (500)
T COG1129 432 IDVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVMRE-GRIVGELDR 485 (500)
T ss_pred cccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEEC-CEEEEEecc
Confidence 3667789999999999999999888888764 89999999999998 999874444
No 283
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=95.62 E-value=0.014 Score=61.79 Aligned_cols=57 Identities=18% Similarity=0.176 Sum_probs=47.8
Q ss_pred CchHHHHHHHHHHHHHh--hCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHH
Q 039187 1 LDARAASIVIRTVRNTV--DTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLT 64 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~--~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~ 64 (265)
||+.++.++.+.+.+.. .+|+|+|+++|+++ ..+.+|+|++|.+ |+++..|+. +++.
T Consensus 791 LD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~--~l~~~D~ii~l~~-G~i~~~g~~----~~l~ 849 (1522)
T TIGR00957 791 VDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS--YLPQVDVIIVMSG-GKISEMGSY----QELL 849 (1522)
T ss_pred cCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh--hhhhCCEEEEecC-CeEEeeCCH----HHHH
Confidence 79999999999997642 35899999999985 3466999999997 999999997 5554
No 284
>PRK13409 putative ATPase RIL; Provisional
Probab=95.60 E-value=0.012 Score=56.22 Aligned_cols=68 Identities=19% Similarity=0.166 Sum_probs=52.4
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCC---cchHHHHHhhCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRH---SCHLTRYFKLLL 71 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~---~~~~~~yF~~~g 71 (265)
||..+...+.+.|+++++ .|.|||+++|++. .+...+|++++|. |++...|..... .+.+..|++.+|
T Consensus 484 LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~--~~~~~~g~~~~~~~~~~~~~~~l~~~~ 555 (590)
T PRK13409 484 LDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE--GEPGKHGHASGPMDMREGMNRFLKELG 555 (590)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc--CcceeeeecCCchhHHHHHHHHHHHcC
Confidence 799999999999999988 5899999999975 6778899999996 477766664211 023345676665
No 285
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=95.56 E-value=0.012 Score=56.88 Aligned_cols=51 Identities=20% Similarity=0.308 Sum_probs=44.8
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEE-EecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEI-YVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~-y~G~~ 56 (265)
||..+...+.+.|+++ .| |||+++|++. .+.+.+|++++|.+ |+++ |.|+.
T Consensus 461 LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~-~~~~~~d~i~~l~~-G~i~~~~g~~ 512 (638)
T PRK10636 461 LDLDMRQALTEALIDF--EG-ALVVVSHDRH-LLRSTTDDLYLVHD-GKVEPFDGDL 512 (638)
T ss_pred CCHHHHHHHHHHHHHc--CC-eEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEcCCCH
Confidence 7999999999999997 34 9999999974 67788999999998 8887 88876
No 286
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=95.53 E-value=0.016 Score=61.01 Aligned_cols=44 Identities=20% Similarity=0.381 Sum_probs=40.0
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
||+.+...+.+.|+++++ .|+|+|+++|+++. .+.+|+|++|.+
T Consensus 610 LD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~--i~~aD~Iivl~~ 654 (1466)
T PTZ00265 610 LDNKSEYLVQKTINNLKGNENRITIIIAHRLST--IRYANTIFVLSN 654 (1466)
T ss_pred cCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHH--HHhCCEEEEEeC
Confidence 799999999999999986 69999999999963 478999999997
No 287
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.42 E-value=0.015 Score=49.76 Aligned_cols=54 Identities=15% Similarity=0.194 Sum_probs=49.4
Q ss_pred CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||-....+++-.|.+|++. +..|+-++|.+ .|+.++.|+|++|.+ |++...||.
T Consensus 159 LD~~RK~EilpylERL~~e~~IPIlYVSHS~-~Ev~RLAd~vV~le~-GkV~A~g~~ 213 (352)
T COG4148 159 LDLPRKREILPYLERLRDEINIPILYVSHSL-DEVLRLADRVVVLEN-GKVKASGPL 213 (352)
T ss_pred cccchhhHHHHHHHHHHHhcCCCEEEEecCH-HHHHhhhheEEEecC-CeEEecCcH
Confidence 6778889999999999984 77899999997 489999999999999 999999998
No 288
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=95.40 E-value=0.02 Score=60.41 Aligned_cols=52 Identities=12% Similarity=0.258 Sum_probs=44.7
Q ss_pred CchHHHHHHHHH-HHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRT-VRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~-l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++.++.+. ++++. +|+|+|+++|++.. .+.+|++++|.+ |+++..|+.
T Consensus 579 LD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~~--~~~ad~ii~l~~-g~i~~~g~~ 631 (1490)
T TIGR01271 579 LDVVTEKEIFESCLCKLM-SNKTRILVTSKLEH--LKKADKILLLHE-GVCYFYGTF 631 (1490)
T ss_pred CCHHHHHHHHHHHHHHHh-cCCeEEEEeCChHH--HHhCCEEEEEEC-CEEEEEcCH
Confidence 799999999974 66664 49999999999964 466999999997 999999997
No 289
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=95.35 E-value=0.02 Score=54.36 Aligned_cols=52 Identities=13% Similarity=0.120 Sum_probs=42.9
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEE-EecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEI-YVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~-y~G~~ 56 (265)
||..+...+.+.|+++. | |||+++|++. .+.+.+|+++++.+||++. +.|+.
T Consensus 476 LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g~~ 528 (556)
T PRK11819 476 LDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEGNF 528 (556)
T ss_pred CCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecCCH
Confidence 79999999999999973 4 8999999985 6778899999998656766 55554
No 290
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=95.33 E-value=0.018 Score=54.57 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=43.6
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEE-EecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEI-YVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~-y~G~~ 56 (265)
||+.+...+.+.|+++ +.|||+++|++. .+.+.+|++++|.+ |+++ +.|+.
T Consensus 192 LD~~~~~~l~~~L~~~---~~tvIiisHd~~-~~~~~~d~v~~l~~-g~i~~~~g~~ 243 (552)
T TIGR03719 192 LDAESVAWLEQHLQEY---PGTVVAVTHDRY-FLDNVAGWILELDR-GRGIPWEGNY 243 (552)
T ss_pred CChHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHhhcCeEEEEEC-CEEEEecCCH
Confidence 7999999999999886 359999999985 67788999999998 8865 77876
No 291
>PTZ00243 ABC transporter; Provisional
Probab=95.28 E-value=0.024 Score=60.10 Aligned_cols=53 Identities=21% Similarity=0.204 Sum_probs=43.4
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++.++++.+......|+|+|+++|++. ..+.+|++++|++ |++++.|+.
T Consensus 813 LD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~--~~~~ad~ii~l~~-G~i~~~G~~ 865 (1560)
T PTZ00243 813 LDAHVGERVVEECFLGALAGKTRVLATHQVH--VVPRADYVVALGD-GRVEFSGSS 865 (1560)
T ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEEC-CEEEEecCH
Confidence 7999988888754322336899999999985 3478999999998 999999997
No 292
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=95.21 E-value=0.022 Score=54.06 Aligned_cols=51 Identities=18% Similarity=0.190 Sum_probs=44.1
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEE-EecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEI-YVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~-y~G~~ 56 (265)
||+.+...+.+.|+++. .|||+++|++. .+-+.+|++++|.+ |+++ |.|+.
T Consensus 194 LD~~~~~~l~~~L~~~~---~tviiisHd~~-~~~~~~d~i~~l~~-g~i~~~~g~~ 245 (556)
T PRK11819 194 LDAESVAWLEQFLHDYP---GTVVAVTHDRY-FLDNVAGWILELDR-GRGIPWEGNY 245 (556)
T ss_pred CChHHHHHHHHHHHhCC---CeEEEEeCCHH-HHHhhcCeEEEEeC-CEEEEecCCH
Confidence 79999999999999873 59999999985 67788999999998 8876 88876
No 293
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=95.15 E-value=0.025 Score=53.71 Aligned_cols=52 Identities=12% Similarity=0.110 Sum_probs=42.6
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEE-EecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEI-YVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~-y~G~~ 56 (265)
||..+...+.+.|+++. | |||+++|++. .+.+.+|++++|.+||++. +.|+.
T Consensus 474 LD~~~~~~l~~~l~~~~--~-~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g~~ 526 (552)
T TIGR03719 474 LDVETLRALEEALLEFA--G-CAVVISHDRW-FLDRIATHILAFEGDSHVEWFEGNY 526 (552)
T ss_pred CCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCCCH
Confidence 79999999999999983 3 8999999985 6778899999998656766 44543
No 294
>PLN03073 ABC transporter F family; Provisional
Probab=95.10 E-value=0.024 Score=55.44 Aligned_cols=51 Identities=24% Similarity=0.344 Sum_probs=43.0
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEE-EecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEI-YVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~-y~G~~ 56 (265)
||..+...+++.|++. .| |||+++|++. .+.+.+|++++|.+ |+++ +.|+.
T Consensus 658 LD~~s~~~l~~~L~~~--~g-tvIivSHd~~-~i~~~~drv~~l~~-G~i~~~~g~~ 709 (718)
T PLN03073 658 LDLDAVEALIQGLVLF--QG-GVLMVSHDEH-LISGSVDELWVVSE-GKVTPFHGTF 709 (718)
T ss_pred CCHHHHHHHHHHHHHc--CC-EEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCCH
Confidence 7999999988888765 34 9999999985 57788999999998 8887 77876
No 295
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=95.06 E-value=0.031 Score=51.13 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=50.4
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||..++..+-+.|.++++.|+.|++.....- |+++++|+|.++.+ |+++...++
T Consensus 434 LDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~-Gri~~~~~~ 487 (501)
T COG3845 434 LDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIYE-GRIVGIVPP 487 (501)
T ss_pred ccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeeeC-Cceeccccc
Confidence 7999999999999999999999999988874 89999999999998 999998888
No 296
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.87 E-value=0.027 Score=53.83 Aligned_cols=52 Identities=23% Similarity=0.388 Sum_probs=46.6
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+...+-+.|.++.+ |+|||+..|..+ ..+..|+|+++++ |+++..|..
T Consensus 635 LDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~~-G~V~E~G~h 686 (716)
T KOG0058|consen 635 LDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVIDK-GRVVEMGTH 686 (716)
T ss_pred cchhhHHHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEEcC-CeEEecccH
Confidence 799999999999999886 599999999886 5688999999998 999999976
No 297
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=94.83 E-value=0.051 Score=45.09 Aligned_cols=53 Identities=9% Similarity=0.207 Sum_probs=45.1
Q ss_pred chHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 2 DARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 2 D~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
-|.-..+|.+.++++.++ |.||+.+-+.-. ...+..|+.++|.+ |++++.||.
T Consensus 168 aP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~-Griv~~G~~ 221 (237)
T COG0410 168 APKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLEN-GRIVLSGTA 221 (237)
T ss_pred CHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeC-CEEEEecCH
Confidence 355568999999999975 778888877654 67899999999998 999999998
No 298
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=94.71 E-value=0.021 Score=52.46 Aligned_cols=57 Identities=18% Similarity=0.253 Sum_probs=48.2
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR 65 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~ 65 (265)
||..+..++-..|.+++. |||.|++.|..|. +.+ .|.|+++++ |+++..|.. ++++.
T Consensus 705 LDT~tER~IQaaL~rlca-~RTtIVvAHRLST-ivn-AD~ILvi~~-G~IvErG~H----eeLl~ 761 (790)
T KOG0056|consen 705 LDTNTERAIQAALARLCA-NRTTIVVAHRLST-IVN-ADLILVISN-GRIVERGRH----EELLK 761 (790)
T ss_pred cCCccHHHHHHHHHHHhc-CCceEEEeeeehh-eec-ccEEEEEeC-CeEeecCcH----HHHHh
Confidence 688888999999999986 8999999999874 434 999999998 999999987 55554
No 299
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.70 E-value=0.03 Score=56.72 Aligned_cols=57 Identities=21% Similarity=0.323 Sum_probs=49.5
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR 65 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~ 65 (265)
||+.+...+=+.|.+.. .|||.|++.|+++ ..+-+|.|.++++ |+++..|.- +++..
T Consensus 1157 LDseSErvVQeALd~a~-~gRT~IvIAHRLS--TIqnaD~I~Vi~~-G~VvE~GtH----~~L~~ 1213 (1228)
T KOG0055|consen 1157 LDSESERVVQEALDRAM-EGRTTIVIAHRLS--TIQNADVIAVLKN-GKVVEQGTH----DELLA 1213 (1228)
T ss_pred hhhhhHHHHHHHHHHhh-cCCcEEEEecchh--hhhcCCEEEEEEC-CEEEecccH----HHHHh
Confidence 78988888888888876 4899999999997 4677999999998 999999998 66664
No 300
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.66 E-value=0.045 Score=45.15 Aligned_cols=51 Identities=16% Similarity=0.273 Sum_probs=45.6
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEe
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYV 53 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~ 53 (265)
|||.++..+|+.-.+..+ .+-|.++++|... +..++=+|.++|++ |+++..
T Consensus 179 LDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh~-G~IvlD 230 (263)
T COG1101 179 LDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLHS-GKIVLD 230 (263)
T ss_pred CCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEeC-CeEEEE
Confidence 799999999999999987 5779999999986 56788999999998 999973
No 301
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.61 E-value=0.052 Score=43.34 Aligned_cols=54 Identities=30% Similarity=0.361 Sum_probs=47.0
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||-+-+.++.++|+.|.. -|-.+++++|+.... --+.|+.++|++ |+++..|-+
T Consensus 182 LDVSVQARLLDllrgLv~~l~la~viVTHDl~Va-rLla~rlmvmk~-g~vve~GLT 236 (258)
T COG4107 182 LDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVA-RLLADRLMVMKQ-GQVVESGLT 236 (258)
T ss_pred cchhhHHHHHHHHHHHHHhcCceEEEEechhHHH-HHhhhcceeecC-CCEeccccc
Confidence 678888999999999987 599999999998643 344899999998 999999988
No 302
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.61 E-value=0.052 Score=47.28 Aligned_cols=54 Identities=20% Similarity=0.218 Sum_probs=47.3
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
|||--..++=+-|.+|-+ -++||+.++|+.. |.++.=|+|.+|.. |+++-.|.|
T Consensus 195 LDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimkd-G~ivQ~Gtp 249 (386)
T COG4175 195 LDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMKD-GEIVQVGTP 249 (386)
T ss_pred cChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEecC-CeEEEeCCH
Confidence 677777777777778766 5999999999986 78899999999996 999999999
No 303
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=94.53 E-value=0.57 Score=39.49 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhhcChhHHHHHHHHHHHHHHHH
Q 039187 121 MACLWKQWWSYWQNPAYTAVKFFFTTFTAVLL 152 (265)
Q Consensus 121 ~~L~~R~~~~~~R~~~~~~~~l~~~~~~~ll~ 152 (265)
+.+.+|+++...|.|..+..-.+..++.|+..
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~ 33 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL 33 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999988877777777543
No 304
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.52 E-value=0.035 Score=57.30 Aligned_cols=57 Identities=19% Similarity=0.306 Sum_probs=48.7
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHH
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLT 64 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~ 64 (265)
+|++++.++.+..-+..-+++|+|.++||- +.++.+|.|++|++ |++...|+- +++.
T Consensus 674 VDahvg~~if~~ci~~~L~~KT~ILVTHql--~~L~~ad~Iivl~~-G~I~~~Gty----~el~ 730 (1381)
T KOG0054|consen 674 VDAHVGKHIFEECIRGLLRGKTVILVTHQL--QFLPHADQIIVLKD-GKIVESGTY----EELL 730 (1381)
T ss_pred hhHhhhHHHHHHHHHhhhcCCEEEEEeCch--hhhhhCCEEEEecC-CeEecccCH----HHHH
Confidence 588888888876665555799999999975 67899999999998 999999998 7777
No 305
>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional
Probab=94.43 E-value=1.4 Score=37.64 Aligned_cols=40 Identities=13% Similarity=0.047 Sum_probs=34.3
Q ss_pred eccccccCCCCCCcchhhhhhhcHHHHHHHHHhhhhcCCC
Q 039187 223 LIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLGMR 262 (265)
Q Consensus 223 l~sG~~~~~~~ip~~~~w~~~lsp~~y~~~al~~~ef~~~ 262 (265)
..||.+-+.+.+|++++++.++||+.+.+|+.=..-+++.
T Consensus 192 ~~SpI~y~~~~vp~~~~~il~~NPl~~~ie~~R~~~~~~~ 231 (264)
T PRK15176 192 LISAVFYTANELPYSLLSIFSWNPLLHANEIVREGMFEGY 231 (264)
T ss_pred HHhhHhhhHHhCcHHHHHHHHHCcHHHHHHHHHHHHhcCc
Confidence 7788888999999999999999999999998776666553
No 306
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=94.30 E-value=0.057 Score=52.17 Aligned_cols=51 Identities=14% Similarity=0.167 Sum_probs=43.3
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEE-EecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEI-YVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~-y~G~~ 56 (265)
||..+...+.+.|+++ +.|||+++|++. .+.+.+|+++.|.+ |+++ |.|+.
T Consensus 187 LD~~~~~~L~~~L~~~---~~tvlivsHd~~-~l~~~~d~i~~L~~-G~i~~~~g~~ 238 (635)
T PRK11147 187 LDIETIEWLEGFLKTF---QGSIIFISHDRS-FIRNMATRIVDLDR-GKLVSYPGNY 238 (635)
T ss_pred cCHHHHHHHHHHHHhC---CCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEEecCCH
Confidence 7999999999999987 359999999975 67788999999998 8886 55665
No 307
>PRK13409 putative ATPase RIL; Provisional
Probab=94.11 E-value=0.047 Score=52.22 Aligned_cols=44 Identities=23% Similarity=0.268 Sum_probs=40.4
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
||..+..++.+.|+++++ |+|||+++|++. .+...+|++++|..
T Consensus 243 LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~~ 286 (590)
T PRK13409 243 LDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAYG 286 (590)
T ss_pred CCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeC
Confidence 799999999999999998 999999999986 67788999999974
No 308
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.05 E-value=0.057 Score=44.36 Aligned_cols=54 Identities=11% Similarity=0.124 Sum_probs=48.5
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
+|+.|+.++..+|.++-+ +|.||+.+.|+.. .+-+-+|++-+|.- |+.+..+|.
T Consensus 189 ~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~-~is~W~d~i~VlYC-GQ~~ESa~~ 243 (330)
T COG4170 189 MEPTTQAQIFRLLSRLNQNSNTTILLISHDLQ-MISQWADKINVLYC-GQTVESAPS 243 (330)
T ss_pred cCccHHHHHHHHHHHhhccCCceEEEEcccHH-HHHHHhhheEEEEe-cccccccch
Confidence 578999999999999987 6889999999985 57788999999997 999999998
No 309
>PLN03073 ABC transporter F family; Provisional
Probab=94.03 E-value=0.065 Score=52.44 Aligned_cols=51 Identities=14% Similarity=0.176 Sum_probs=43.6
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEE-EecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEI-YVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~-y~G~~ 56 (265)
||+.+...+.+.|+++ +.|||+++|+.. .+.+.+|++++|.+ |++. |.|+.
T Consensus 375 LD~~~~~~l~~~L~~~---~~tviivsHd~~-~l~~~~d~i~~l~~-g~i~~~~g~~ 426 (718)
T PLN03073 375 LDLHAVLWLETYLLKW---PKTFIVVSHARE-FLNTVVTDILHLHG-QKLVTYKGDY 426 (718)
T ss_pred CCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCCH
Confidence 7999999999999986 789999999964 57778999999998 8886 66665
No 310
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.69 E-value=0.053 Score=46.70 Aligned_cols=46 Identities=20% Similarity=0.400 Sum_probs=39.6
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCe
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQ 49 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~ 49 (265)
||+.+...+++.|+++.+ +.|+|+++|+|. +.+.+|+++.+.++++
T Consensus 205 Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~~~~~ 250 (276)
T cd03241 205 ISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVEKEVE 250 (276)
T ss_pred CCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEEEecC
Confidence 689999999999999865 789999999985 5689999999998533
No 311
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.59 E-value=0.094 Score=54.26 Aligned_cols=57 Identities=14% Similarity=0.281 Sum_probs=45.6
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR 65 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~ 65 (265)
.|+.|-..|=+++|+- -.++||++..|..+. +.+ +|+|++|++ |+++.+|.| +++.+
T Consensus 1306 VD~~TD~lIQ~tIR~~-F~dcTVltIAHRl~T-Vmd-~DrVlVld~-G~v~EfdsP----~~Ll~ 1362 (1381)
T KOG0054|consen 1306 VDPETDALIQKTIREE-FKDCTVLTIAHRLNT-VMD-SDRVLVLDA-GRVVEFDSP----AELLS 1362 (1381)
T ss_pred CChHHHHHHHHHHHHH-hcCCeEEEEeeccch-hhh-cCeEEEeeC-CeEeecCCh----HHHHh
Confidence 3666666676777662 269999999999984 555 999999998 999999999 66664
No 312
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=93.37 E-value=0.091 Score=50.81 Aligned_cols=51 Identities=18% Similarity=0.228 Sum_probs=42.8
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEE-EecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEI-YVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~-y~G~~ 56 (265)
||..+...+.+.|++. +.|||+++|++. .+.+.+|++++|.+ |++. |.|..
T Consensus 180 LD~~~~~~L~~~L~~~---~~tviivsHd~~-~l~~~~d~i~~L~~-G~i~~~~g~~ 231 (638)
T PRK10636 180 LDLDAVIWLEKWLKSY---QGTLILISHDRD-FLDPIVDKIIHIEQ-QSLFEYTGNY 231 (638)
T ss_pred CCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHHhcCEEEEEeC-CEEEEecCCH
Confidence 7999999999998875 569999999975 67788999999998 7875 66654
No 313
>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []. These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane
Probab=93.18 E-value=1.2 Score=36.84 Aligned_cols=92 Identities=11% Similarity=0.113 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCcChhhHHHhhhHHHHHHHH----------------
Q 039187 120 FMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIIS---------------- 183 (265)
Q Consensus 120 ~~~L~~R~~~~~~R~~~~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~~~g~l~~~~~~---------------- 183 (265)
++.+.+|+++..+|++......+...+....++...+..-++ ..-....|.++.+..+
T Consensus 1 ~~~l~~kdl~le~r~~~~~~~~~lf~l~~i~if~~al~~~~~------~l~~~~~gllWi~~lfa~~l~~~r~f~~E~e~ 74 (215)
T PF03379_consen 1 FLALFRKDLRLEFRSKEGLLSMLLFFLLVIVIFSFALGPDPD------LLARVAPGLLWIALLFASLLGLNRSFAREYED 74 (215)
T ss_pred CHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHhhcCCchh------HHHHHhHHHHHHHHHHHHHHHhhHhHHHHHhC
Confidence 467899999999999998877777777776666666532211 1112233444444443
Q ss_pred ---------------HHHHHHHHHhhHHHHHHHHHHHHHhhccCccccc
Q 039187 184 ---------------SAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTA 217 (265)
Q Consensus 184 ---------------y~la~~~~~lp~~~~~~~i~~~i~y~~~g~~~~~ 217 (265)
++++|.+.......+..++...+...+.|.+...
T Consensus 75 G~L~~l~l~~~~~~~i~l~K~l~~~~~~~~~~~i~~pl~~~l~~~~~~~ 123 (215)
T PF03379_consen 75 GTLEQLLLSPVPRSAIFLGKLLANWLLLFLPELIIFPLFALLFNLPISS 123 (215)
T ss_pred CcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH
Confidence 7899999987777776666666666666766543
No 314
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=93.16 E-value=0.082 Score=50.34 Aligned_cols=43 Identities=16% Similarity=0.393 Sum_probs=38.4
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
||..++..+.+.|+++++ +++||+++|+|. +...+|+++++.+
T Consensus 475 ld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l~k 517 (563)
T TIGR00634 475 VSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKVEK 517 (563)
T ss_pred CCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEEEE
Confidence 689999999999999985 899999999985 4468999999997
No 315
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=92.26 E-value=0.28 Score=44.17 Aligned_cols=51 Identities=18% Similarity=0.169 Sum_probs=40.8
Q ss_pred chHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecC
Q 039187 2 DARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGL 55 (265)
Q Consensus 2 D~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~ 55 (265)
||+-...+.+.+-.+-+ .|+||++++|+-++ |.+.||++.+.+ |+++.--+
T Consensus 480 DPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~Y--F~~ADrll~~~~-G~~~e~tg 531 (546)
T COG4615 480 DPAFRREFYQVLLPLLKEQGKTIFAISHDDHY--FIHADRLLEMRN-GQLSELTG 531 (546)
T ss_pred ChHHHHHHHHHHhHHHHHhCCeEEEEecCchh--hhhHHHHHHHhc-Cceeeccc
Confidence 66667777766665555 79999999999865 789999999999 89887543
No 316
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.05 E-value=0.37 Score=39.38 Aligned_cols=55 Identities=20% Similarity=0.189 Sum_probs=45.6
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCC-CeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQG-RQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~g-g~~~y~G~~ 56 (265)
||..+..++-++|-++++ +|+.++.++|... |..-+.+++++|+.| |+++..=|+
T Consensus 163 lDa~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 163 LDALTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCC
Confidence 688999999999999998 7999999999986 455568999999864 577766555
No 317
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=91.68 E-value=0.18 Score=48.73 Aligned_cols=47 Identities=13% Similarity=0.135 Sum_probs=39.0
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhcc-CCCeEEE
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMK-QGRQEIY 52 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~-~gg~~~y 52 (265)
||..+...+.+.|++. +.|||+++|+.. .+.+.+|+++++. + |++..
T Consensus 471 LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~-g~i~~ 518 (635)
T PRK11147 471 LDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGN-GKIGR 518 (635)
T ss_pred CCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCC-CeEEE
Confidence 7999999999999886 459999999974 6778899999997 6 56544
No 318
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=91.54 E-value=0.18 Score=49.09 Aligned_cols=59 Identities=17% Similarity=0.275 Sum_probs=50.9
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC-----CCeEEEecCCCCCcchHHH
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ-----GRQEIYVGLLGRHSCHLTR 65 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~-----gg~~~y~G~~~~~~~~~~~ 65 (265)
|....-.++++.|.+|.+.|.|||+.-|.. ++...+|.|+=|.+ ||+++..|.| +++.+
T Consensus 856 LH~~Di~kLl~VL~rLvd~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTP----eeva~ 919 (935)
T COG0178 856 LHFDDIKKLLEVLHRLVDKGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTP----EEVAK 919 (935)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCH----HHHHh
Confidence 455677899999999999999999999976 78899999999964 6899999999 66654
No 319
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=91.35 E-value=0.4 Score=38.71 Aligned_cols=54 Identities=17% Similarity=0.206 Sum_probs=47.3
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||.+...+++++.-+|-+ .|.+-|-+.++.. -+-+..|+|++|.+ |+++..|.+
T Consensus 180 LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG-~iKHi~D~viVM~E-G~vvE~G~t 234 (267)
T COG4167 180 LDMSMRSQLINLMLELQEKQGISYIYVTQHIG-MIKHISDQVLVMHE-GEVVERGST 234 (267)
T ss_pred ccHHHHHHHHHHHHHHHHHhCceEEEEechhh-HhhhhcccEEEEec-CceeecCCh
Confidence 788999999999999987 6999887777766 46677999999999 999999998
No 320
>PRK10869 recombination and repair protein; Provisional
Probab=91.33 E-value=0.22 Score=47.31 Aligned_cols=43 Identities=19% Similarity=0.402 Sum_probs=38.2
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
||..++..+.+.|+++++ +.+|||++|+|. +...+|+.+.+.+
T Consensus 465 ld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v~k 507 (553)
T PRK10869 465 ISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFVSK 507 (553)
T ss_pred CCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEEec
Confidence 688999999999999975 689999999995 4588999999997
No 321
>COG4587 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=89.32 E-value=3.2 Score=34.93 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=26.4
Q ss_pred eccccccCCCCCCcchhhhhhhcHHHHHHH
Q 039187 223 LIPGFMIPGPRIPIRWRWYYWANPIAWTLY 252 (265)
Q Consensus 223 l~sG~~~~~~~ip~~~~w~~~lsp~~y~~~ 252 (265)
++||.+.|.+..|+|.+-+--..|+-|...
T Consensus 190 f~sG~l~PL~~fP~~v~~il~ftPFpy~~y 219 (268)
T COG4587 190 FLSGSLAPLAFFPDWVRAILAFTPFPYLLY 219 (268)
T ss_pred HhccccchHHhChHHHHHHHHhCCchhhhc
Confidence 899999999999999998877788877764
No 322
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=89.15 E-value=0.65 Score=38.65 Aligned_cols=41 Identities=12% Similarity=-0.041 Sum_probs=33.3
Q ss_pred HHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecC
Q 039187 12 TVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGL 55 (265)
Q Consensus 12 ~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~ 55 (265)
.++.+.+ .|.++++++|. .++.+++|++..+.+ |++...+.
T Consensus 134 il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~-g~~~~~~~ 175 (222)
T cd03285 134 IAEYIATQIKCFCLFATHF--HELTALADEVPNVKN-LHVTALTD 175 (222)
T ss_pred HHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEE-EEEEEEEe
Confidence 3455554 58999999996 688999999999998 89988764
No 323
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=89.04 E-value=0.81 Score=37.29 Aligned_cols=53 Identities=8% Similarity=0.022 Sum_probs=42.3
Q ss_pred CchHHHHHHHH-HHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIR-TVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~-~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.....+.+ .++.+.+.+.++|+++|.+ ++.+.+|++..+.. |++...+..
T Consensus 121 ld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~-~~~~~~~~~ 174 (202)
T cd03243 121 TSTAEGLAIAYAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKN-LHMEELITT 174 (202)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEE-EEEEEEecC
Confidence 57777776654 4666666799999999975 77888999999998 899988865
No 324
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=86.40 E-value=1 Score=36.82 Aligned_cols=49 Identities=10% Similarity=0.157 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 5 AASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 5 ~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
.+.+..++|+.+|. .++|+++-|+.. .+-++.|+|.+|.+ |+++..|..
T Consensus 182 Et~~taeLl~~la~-~hsilVVEHDM~-Fvr~~A~~VTVlh~-G~VL~EGsl 230 (249)
T COG4674 182 ETEKTAELLKSLAG-KHSILVVEHDMG-FVREIADKVTVLHE-GSVLAEGSL 230 (249)
T ss_pred HHHHHHHHHHHHhc-CceEEEEeccHH-HHHHhhheeEEEec-cceeecccH
Confidence 34677888888875 789999999986 67888999999999 999999987
No 325
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.28 E-value=1.1 Score=37.07 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEEecCC
Q 039187 4 RAASIVIRTVRNTVDTGRTVVCTIHQP 30 (265)
Q Consensus 4 ~~~~~~~~~l~~l~~~~~tvi~~ihqp 30 (265)
....+++..+|++++.|++|++|.|+-
T Consensus 142 ~~vl~fm~~~r~l~d~gKvIilTvhp~ 168 (235)
T COG2874 142 DAVLNFMTFLRKLSDLGKVIILTVHPS 168 (235)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeChh
Confidence 366889999999999999999999974
No 326
>COG3910 Predicted ATPase [General function prediction only]
Probab=83.37 E-value=1.9 Score=35.03 Aligned_cols=30 Identities=20% Similarity=0.457 Sum_probs=27.1
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQP 30 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp 30 (265)
|.+..+..+...|++++++|--+|+.+|.|
T Consensus 159 LSp~RQlella~l~~la~sGaQ~IiATHSP 188 (233)
T COG3910 159 LSPSRQLELLAILRDLADSGAQIIIATHSP 188 (233)
T ss_pred CCHHHHHHHHHHHHHHHhcCCeEEEEecCh
Confidence 567788999999999999998899999988
No 327
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=81.53 E-value=1.9 Score=43.00 Aligned_cols=53 Identities=9% Similarity=-0.039 Sum_probs=42.8
Q ss_pred chHHHHHHHHHHHHHhhCCCeEEEEecCCCHH--------HHHhhhhhhhccCCCeEEEecC
Q 039187 2 DARAASIVIRTVRNTVDTGRTVVCTIHQPSIE--------IFEAFDELFLMKQGRQEIYVGL 55 (265)
Q Consensus 2 D~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~--------~~~~fd~~~~l~~gg~~~y~G~ 55 (265)
|+..+..+.+.++++++.|.++++++|+|..- +.+.+|.+++|.+ |+....|+
T Consensus 667 d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n-~~a~~~~~ 727 (818)
T PRK13830 667 HPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPN-GAAREPGT 727 (818)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCC-ccccccch
Confidence 67889999999999998899999999998632 3467898888887 77655443
No 328
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=81.04 E-value=2.6 Score=38.83 Aligned_cols=52 Identities=13% Similarity=0.053 Sum_probs=45.4
Q ss_pred CchHHHHHHHHHHHHHhh--CCC-----eEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD--TGR-----TVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~--~~~-----tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
+|+.....+.++++++.. .|. ||++..|+.+. ..+|++..+.+ |+++..+..
T Consensus 280 ~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~d-G~Ivls~~l 338 (438)
T PRK07721 280 YTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILD-GHFVLDRQL 338 (438)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecC-EEEEEeccH
Confidence 578888899999999984 575 99999999873 67999999998 999999986
No 329
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=78.76 E-value=1 Score=35.77 Aligned_cols=43 Identities=16% Similarity=0.118 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEEecCCCH--------HHHHhhhhhhhccC
Q 039187 4 RAASIVIRTVRNTVDTGRTVVCTIHQPSI--------EIFEAFDELFLMKQ 46 (265)
Q Consensus 4 ~~~~~~~~~l~~l~~~~~tvi~~ihqp~~--------~~~~~fd~~~~l~~ 46 (265)
.....+.+.++.+.+.|.|++++.|.... .+...+|.++.|..
T Consensus 114 ~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~~ 164 (187)
T cd01124 114 TARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLRL 164 (187)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeccccCCCcccCcCceeEeeeEEEEEEE
Confidence 34456677888888889999999998764 25677888888874
No 330
>TIGR01190 ccmB heme exporter protein CcmB. This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.
Probab=78.31 E-value=25 Score=28.99 Aligned_cols=88 Identities=8% Similarity=0.037 Sum_probs=54.5
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCcChhhHHHhhhHHHHHHHH--------------------
Q 039187 124 LWKQWWSYWQNPAYTAVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIIS-------------------- 183 (265)
Q Consensus 124 ~~R~~~~~~R~~~~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~~~g~l~~~~~~-------------------- 183 (265)
.+|+++..+|++.....-++..+.+..++.+.+. .+++ ..-..-.|.++.+..+
T Consensus 2 ~~kDl~l~~r~~~~~~~~llF~l~vi~lf~la~g---p~~~---~l~~~apgilWva~lfa~ll~l~rlF~~d~e~g~Le 75 (211)
T TIGR01190 2 IRRDLRLAFRAGGGILNPLWFFLIVVTLFPFGVG---PELK---LLSRIAPGIVWVGALLSSLLSLDRLFRDDFEDGSLD 75 (211)
T ss_pred cHHHHHHHHcccchHHHHHHHHHHHHHHHHhhcC---CcHH---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcHH
Confidence 5899999999998887777766666666666553 2211 1122233555555444
Q ss_pred -----------HHHHHHHHHhhHHHHHHHHHHHHHhhccCccccc
Q 039187 184 -----------SAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTA 217 (265)
Q Consensus 184 -----------y~la~~~~~lp~~~~~~~i~~~i~y~~~g~~~~~ 217 (265)
.+++|.++......+.-++..-+.-.+.|++...
T Consensus 76 ~lll~p~~~~~i~l~K~la~wl~~~l~~~l~~p~~~~~l~~~~~~ 120 (211)
T TIGR01190 76 LLMLSPTPLELTVLAKVLAHWLVTGLPLVLLSPLLALLLNLDVPA 120 (211)
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchH
Confidence 7888888886665555555555555556665543
No 331
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A.
Probab=77.89 E-value=0.71 Score=39.89 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=0.0
Q ss_pred eccccccCCCCCCcchhhhhhhcHHHHHHHHHhhhh
Q 039187 223 LIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPR 258 (265)
Q Consensus 223 l~sG~~~~~~~ip~~~~w~~~lsp~~y~~~al~~~e 258 (265)
.++|.+.+.+++|++++|+.++.|..|..+++...-
T Consensus 282 ~~~~~~~~~~~~~~~~~~i~~~~P~~~~~~~~~~~~ 317 (344)
T PF12698_consen 282 FLSGGFFPLSSLPSFLQWISSFLPFYWFIQGLRNII 317 (344)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 455666778899999999999999999888875443
No 332
>PRK04296 thymidine kinase; Provisional
Probab=76.96 E-value=2.7 Score=33.92 Aligned_cols=48 Identities=19% Similarity=0.146 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhhCCCeEEEEecC---------CCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 7 SIVIRTVRNTVDTGRTVVCTIHQ---------PSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 7 ~~~~~~l~~l~~~~~tvi~~ihq---------p~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
.++.++++.++..|.+|+++-+. ++.++....|.|..|.. .+..+|..
T Consensus 93 ~~v~~l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~~--vC~~Cg~~ 149 (190)
T PRK04296 93 EQVVQLAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELKA--ICVHCGRK 149 (190)
T ss_pred HHHHHHHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCeEEEeeE--EccccCCc
Confidence 34777888878899999999999 88899999999999985 67667754
No 333
>PF12051 DUF3533: Protein of unknown function (DUF3533); InterPro: IPR022703 This transmembrane domain is functionally uncharacterised. It is found in bacterial and eukaryotic proteins.
Probab=76.62 E-value=13 Score=33.56 Aligned_cols=36 Identities=19% Similarity=0.156 Sum_probs=31.2
Q ss_pred cccCCCCCCcchhhhhhhcHHHHHHHHHhhhhcCCCC
Q 039187 227 FMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLGMRR 263 (265)
Q Consensus 227 ~~~~~~~ip~~~~w~~~lsp~~y~~~al~~~ef~~~~ 263 (265)
.+.|.+-.|+..||.+-+ |++-++|++-..-|++..
T Consensus 328 ~~~P~el~p~fyr~gya~-P~~n~~~~~r~I~fd~~~ 363 (382)
T PF12051_consen 328 TFYPLELSPGFYRYGYAM-PMHNIYEGLRVIFFDTCK 363 (382)
T ss_pred ccCChhhCccHHHHhhhh-hHHHHHHHHHHheeCCCc
Confidence 456888899999999999 999999999998777654
No 334
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=75.42 E-value=4 Score=33.73 Aligned_cols=49 Identities=14% Similarity=-0.017 Sum_probs=37.3
Q ss_pred HHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187 10 IRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR 65 (265)
Q Consensus 10 ~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~ 65 (265)
...++.+.+. +.++|+++|+. ++.+..|++--+.+ |++...+.. +++..
T Consensus 132 ~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~-~~~~~~~~~----~~l~~ 181 (216)
T cd03284 132 WAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKN-FHVAVKEKG----GGVVF 181 (216)
T ss_pred HHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEE-EEEEEEeeC----CeEEE
Confidence 3455666665 89999999995 78888999888887 888887776 55544
No 335
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=74.75 E-value=4.5 Score=35.36 Aligned_cols=47 Identities=26% Similarity=0.260 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 7 SIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 7 ~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
.+..+.++.+...+.++++|+|..+ ..+..||+..|.. |+....|.+
T Consensus 230 ~e~~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~-~~~~~~g~~ 276 (308)
T TIGR02788 230 DEAFDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVK-SSQAGLGLD 276 (308)
T ss_pred HHHHHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhh-ccccccCCC
Confidence 4567777777654556799999998 4566999999998 888888887
No 336
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=74.13 E-value=5 Score=41.31 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=27.8
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQP 30 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp 30 (265)
||+.+...+++.|+.+.+.|+||++++|.+
T Consensus 988 lD~~~~~~~~~~l~~l~~~g~~v~iisH~~ 1017 (1047)
T PRK10246 988 LDSETLDTALDALDALNASGKTIGVISHVE 1017 (1047)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecHH
Confidence 799999999999999998999999999943
No 337
>PRK13695 putative NTPase; Provisional
Probab=74.00 E-value=11 Score=29.60 Aligned_cols=47 Identities=13% Similarity=0.230 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecC
Q 039187 6 ASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGL 55 (265)
Q Consensus 6 ~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~ 55 (265)
...+.+.+.++.+.|+++|+++|.. .+....|++..+.. |++...-+
T Consensus 112 ~~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~-~~i~~~~~ 158 (174)
T PRK13695 112 SPKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPG-GRVYELTP 158 (174)
T ss_pred hHHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCC-cEEEEEcc
Confidence 3567788888888899999999973 45577999999997 88877644
No 338
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=71.70 E-value=5.8 Score=32.32 Aligned_cols=31 Identities=6% Similarity=0.087 Sum_probs=24.9
Q ss_pred CchHHHHHHH-HHHHHHhhCCCeEEEEecCCC
Q 039187 1 LDARAASIVI-RTVRNTVDTGRTVVCTIHQPS 31 (265)
Q Consensus 1 LD~~~~~~~~-~~l~~l~~~~~tvi~~ihqp~ 31 (265)
+|+.+...+. ..++++.+.|.++|+++|++.
T Consensus 118 lD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~ 149 (199)
T cd03283 118 TNSRERQAASAAVLKFLKNKNTIGIISTHDLE 149 (199)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHH
Confidence 5777777665 468888778999999999974
No 339
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=71.60 E-value=7.3 Score=31.17 Aligned_cols=50 Identities=10% Similarity=0.044 Sum_probs=33.4
Q ss_pred CchHHHHHHH-HHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEe
Q 039187 1 LDARAASIVI-RTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYV 53 (265)
Q Consensus 1 LD~~~~~~~~-~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~ 53 (265)
+|+.....+. ..++.+.++ |.++++++|.+ ++.+.+|+.--+.. ++..+.
T Consensus 91 ~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v~~-~~~~~~ 142 (185)
T smart00534 91 TSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGVRN-LHMSAD 142 (185)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccceE-EEEEEE
Confidence 5777666654 566777774 89999999997 57777775433443 444443
No 340
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=68.57 E-value=54 Score=27.44 Aligned_cols=26 Identities=12% Similarity=0.221 Sum_probs=21.5
Q ss_pred HHHHHHHHHhhcChhHHHHHHHHHHH
Q 039187 122 ACLWKQWWSYWQNPAYTAVKFFFTTF 147 (265)
Q Consensus 122 ~L~~R~~~~~~R~~~~~~~~l~~~~~ 147 (265)
.+.++++++.+|+|..+....+..++
T Consensus 2 ~i~~~E~~~~~r~~~~~~~~~~~~~~ 27 (277)
T PF12679_consen 2 AIAKKEFRELFRSRRFWILLIIFLLL 27 (277)
T ss_pred hhHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 57899999999999988777666655
No 341
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=68.41 E-value=7 Score=32.47 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhCCCeEEEEecCCCH
Q 039187 7 SIVIRTVRNTVDTGRTVVCTIHQPSI 32 (265)
Q Consensus 7 ~~~~~~l~~l~~~~~tvi~~ihqp~~ 32 (265)
.++++.++.+++.|.|+++++|++..
T Consensus 142 ~~~l~~l~~l~~~g~tvllt~~~~~~ 167 (234)
T PRK06067 142 LNFLTEAKNLVDLGKTILITLHPYAF 167 (234)
T ss_pred HHHHHHHHHHHhCCCEEEEEecCCcC
Confidence 45555567767789999999998763
No 342
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=67.64 E-value=4.9 Score=29.63 Aligned_cols=42 Identities=10% Similarity=0.167 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 5 AASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 5 ~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
...++++.++...++|.+||+.+..|.+.+-+..|.++....
T Consensus 58 ~t~e~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~ 99 (126)
T cd05008 58 ETADTLAALRLAKEKGAKTVAITNVVGSTLAREADYVLYLRA 99 (126)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEEEecC
Confidence 345788888888888999999999999999999999888776
No 343
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=67.57 E-value=4 Score=30.26 Aligned_cols=42 Identities=7% Similarity=0.154 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 5 AASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 5 ~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
...++.+.++...++|..||+.+..+.+.+-+.+|.++.+..
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~ 100 (128)
T cd05014 59 ETDELLNLLPHLKRRGAPIIAITGNPNSTLAKLSDVVLDLPV 100 (128)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCCchhhhCCEEEECCC
Confidence 346788888888778999999999999999999998888875
No 344
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=66.66 E-value=9.8 Score=29.79 Aligned_cols=34 Identities=12% Similarity=0.080 Sum_probs=26.0
Q ss_pred HHHHHhhcChhHH---HHHHHHHHHHHHHHHHHhcCC
Q 039187 126 KQWWSYWQNPAYT---AVKFFFTTFTAVLLGSLSWDL 159 (265)
Q Consensus 126 R~~~~~~R~~~~~---~~~l~~~~~~~ll~g~~f~~~ 159 (265)
|+++..+|||..+ ++.++.+++++++++..+++.
T Consensus 1 ~E~~~~~r~~~~~~~li~~~~~P~i~~~~~~~a~~~~ 37 (164)
T TIGR03061 1 SELKRLRKNKLLRIALIAIMLIPLLYGGLFLWAFWDP 37 (164)
T ss_pred ChHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 5788889999644 445777888888999888753
No 345
>COG1511 Predicted membrane protein [Function unknown]
Probab=64.73 E-value=5.5 Score=39.61 Aligned_cols=62 Identities=18% Similarity=0.253 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHHHHhhccCccccccccee--------eccccccCCCCCCcchhhhhhhcHHHHHHHHH
Q 039187 193 VPHIFVQSLVYSVIVDAMMGFDRTASKFFR--------LIPGFMIPGPRIPIRWRWYYWANPIAWTLYGL 254 (265)
Q Consensus 193 lp~~~~~~~i~~~i~y~~~g~~~~~~~~~~--------l~sG~~~~~~~ip~~~~w~~~lsp~~y~~~al 254 (265)
....++.+++|..+.|.+++.-...+.+.. ..+|-..|.+..|.++++++..-|+.|++.++
T Consensus 658 ~~~~i~~s~~f~~ii~~lv~~~g~~g~~i~ivllvlq~~~~~G~~pi~~~~~~~~~l~~~lp~ty~v~~~ 727 (780)
T COG1511 658 VLFAIFSSVAFMIIIYLLVSLFGNPGKFIAIVLLVLQIAGSGGTFPIQLSPSFFQILHPALPLTYAVNGF 727 (780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHhccccccchhccHHHHHHHHHhccHHHHHHHh
Confidence 345667777788888888876666665543 66777888899999999999999999997654
No 346
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=63.88 E-value=12 Score=31.24 Aligned_cols=31 Identities=26% Similarity=0.335 Sum_probs=26.0
Q ss_pred chHHHHHHHHHHHHHhh-CCCeEEEEecCCCH
Q 039187 2 DARAASIVIRTVRNTVD-TGRTVVCTIHQPSI 32 (265)
Q Consensus 2 D~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~ 32 (265)
|+....++++.|+++++ .|.+|+++.|....
T Consensus 130 d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~ 161 (239)
T cd01125 130 DNGAMDAVIKALRRIAAQTGAAILLVHHVRKG 161 (239)
T ss_pred CHHHHHHHHHHHHHHHHHhCCEEEEEeccCcc
Confidence 66677889999999987 59999999998753
No 347
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=63.78 E-value=3.4 Score=34.10 Aligned_cols=41 Identities=20% Similarity=0.128 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEecCCC--------HHHHHhhhhhhhcc
Q 039187 5 AASIVIRTVRNTVDTGRTVVCTIHQPS--------IEIFEAFDELFLMK 45 (265)
Q Consensus 5 ~~~~~~~~l~~l~~~~~tvi~~ihqp~--------~~~~~~fd~~~~l~ 45 (265)
....+.++++.+.+.|.|++++.|... ..+-..+|.+++|.
T Consensus 129 ~r~~l~~l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 129 RRTELFRFYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 345677788888888999999999632 12455688888886
No 348
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=63.41 E-value=15 Score=30.88 Aligned_cols=62 Identities=15% Similarity=0.239 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhhCCCeEEEEecCCCHHHHHh-hhhhhhccCCCeEEEecCCCC---CcchHHHHHhh
Q 039187 7 SIVIRTVRNTVDTGRTVVCTIHQPSIEIFEA-FDELFLMKQGRQEIYVGLLGR---HSCHLTRYFKL 69 (265)
Q Consensus 7 ~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~-fd~~~~l~~gg~~~y~G~~~~---~~~~~~~yF~~ 69 (265)
.+..+.|++-.-.-..++=++..-..+.|.. .+|++++.+ |+++|.|-+|- +.+++.++++.
T Consensus 170 ~~aA~~l~~~~~~~pi~vD~mdN~~~~~YgA~PeRlyIi~~-gkv~Y~Gg~GP~~y~~~e~r~~L~~ 235 (237)
T PF00837_consen 170 LRAAKLLKEEFPQCPIVVDTMDNNFNKAYGALPERLYIIQD-GKVVYKGGPGPFGYSPEELREWLEK 235 (237)
T ss_pred HHHHHHHHhhCCCCCEEEEccCCHHHHHhCCCcceEEEEEC-CEEEEeCCCCCCcCCHHHHHHHHHh
Confidence 3444555544422334555666555556654 899999997 99999887753 34666666654
No 349
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=62.33 E-value=6.3 Score=29.11 Aligned_cols=43 Identities=9% Similarity=0.108 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCC
Q 039187 5 AASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGR 48 (265)
Q Consensus 5 ~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg 48 (265)
...++++.++...++|..+|+.+.++.+.+-+..|.++.... |
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~-~ 101 (120)
T cd05710 59 NTKETVAAAKFAKEKGATVIGLTDDEDSPLAKLADYVIVYGF-E 101 (120)
T ss_pred CChHHHHHHHHHHHcCCeEEEEECCCCCcHHHhCCEEEEccC-C
Confidence 456778888888778999999999999999999999998887 5
No 350
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=62.08 E-value=7.2 Score=28.75 Aligned_cols=41 Identities=12% Similarity=0.174 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 6 ASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 6 ~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
..++.+.++.+.+.|..+|+.++.+.+.+-+..|.++.+..
T Consensus 66 ~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ad~~l~~~~ 106 (131)
T PF01380_consen 66 TRELIELLRFAKERGAPVILITSNSESPLARLADIVLYIPT 106 (131)
T ss_dssp THHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEEEES
T ss_pred chhhhhhhHHHHhcCCeEEEEeCCCCCchhhhCCEEEEecC
Confidence 46778888876678999999999999999999998888887
No 351
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=61.11 E-value=14 Score=35.13 Aligned_cols=51 Identities=18% Similarity=0.272 Sum_probs=38.3
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGL 55 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~ 55 (265)
||-.+..-+-+.|++. .| |+|++.|+ +..+-+.+++|+-+..|.-..|.|-
T Consensus 184 LD~~~i~WLe~~L~~~--~g-tviiVSHD-R~FLd~V~t~I~~ld~g~l~~y~Gn 234 (530)
T COG0488 184 LDLESIEWLEDYLKRY--PG-TVIVVSHD-RYFLDNVATHILELDRGKLTPYKGN 234 (530)
T ss_pred cCHHHHHHHHHHHHhC--CC-cEEEEeCC-HHHHHHHhhheEEecCCceeEecCC
Confidence 5666666666666643 57 99999998 6788888999999999545556553
No 352
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=57.66 E-value=30 Score=30.34 Aligned_cols=41 Identities=12% Similarity=-0.047 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHh
Q 039187 116 YFTQFMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGSLS 156 (265)
Q Consensus 116 ~~~Q~~~L~~R~~~~~~R~~~~~~~~l~~~~~~~ll~g~~f 156 (265)
|+.|-+..+++.++..+|||......++...+.-++.|..+
T Consensus 9 ~~~~h~~~~~~~~~~l~r~~~~s~~si~ti~i~L~l~g~~~ 49 (309)
T TIGR00439 9 FSLQVEYARSALKQDLRQQPFGTLLTLIVIAVSLTLPLVMY 49 (309)
T ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999988776665555554544433
No 353
>PF06182 ABC2_membrane_6: ABC-2 family transporter protein; InterPro: IPR010390 This family consists of a number of hypothetical bacterial proteins of unknown function.
Probab=56.78 E-value=63 Score=26.61 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=25.8
Q ss_pred eccccccCCCCCCcchhhh-hhhcHHHHHHHH
Q 039187 223 LIPGFMIPGPRIPIRWRWY-YWANPIAWTLYG 253 (265)
Q Consensus 223 l~sG~~~~~~~ip~~~~w~-~~lsp~~y~~~a 253 (265)
+++|...|.+-.|+|++++ .++.|+.|....
T Consensus 154 l~sg~~~Pl~~fp~~~~~il~~~lPf~~i~~~ 185 (229)
T PF06182_consen 154 LLSGAIYPLSIFPGWIQFILTFILPFAYISYV 185 (229)
T ss_pred HHHHHHccHHHhHHHHHHHHHHHhhHHHHHHH
Confidence 8999999999999999985 555999876543
No 354
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=55.47 E-value=25 Score=29.26 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=40.5
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||-.....+.+.||+-++ +|.||+-.+|-=- -+-.--.++..++. |+++-.-+-
T Consensus 178 LDVlARadLLeFlkeEce~RgatIVYATHIFD-GLe~Wpthl~yi~~-Gkl~~~l~~ 232 (291)
T KOG2355|consen 178 LDVLARADLLEFLKEECEQRGATIVYATHIFD-GLETWPTHLVYIKS-GKLVDNLKY 232 (291)
T ss_pred hHHHHHHHHHHHHHHHHhhcCcEEEEEeeecc-chhhcchhEEEecC-Ceeeecccc
Confidence 577788999999999998 7999999999521 12233457778886 888776555
No 355
>COG2386 CcmB ABC-type transport system involved in cytochrome c biogenesis, permease component [Posttranslational modification, protein turnover, chaperones]
Probab=54.98 E-value=1.2e+02 Score=25.04 Aligned_cols=92 Identities=12% Similarity=0.107 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCcChhhHHHhhhHHHHHHHH--------------
Q 039187 118 TQFMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIIS-------------- 183 (265)
Q Consensus 118 ~Q~~~L~~R~~~~~~R~~~~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~~~g~l~~~~~~-------------- 183 (265)
+-+..+.+|..|..+|.+.-...-+......-.++...+ +.|++ ..-..-.|.++.+..+
T Consensus 2 ~~~~~l~~rdLrl~~R~~~~~~~~l~F~l~Vi~lfp~~v---Gpd~~---~la~iaPgilWia~lLA~lL~l~rlF~~d~ 75 (221)
T COG2386 2 MAFLALFKRDLRLEFRAKAGILNPLLFFLLVITLFPLAV---GPDPQ---LLARIAPGILWIAALLASLLGLERLFRDDY 75 (221)
T ss_pred hhHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccc---CCchh---HHHHhcchHHHHHHHHHHHHhHHHHHHHhh
Confidence 346788999999999999877666655555555554443 44432 1111222334333332
Q ss_pred -----------------HHHHHHHHHhhHHHHHHHHHHHHHhhccCccc
Q 039187 184 -----------------SAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDR 215 (265)
Q Consensus 184 -----------------y~la~~~~~lp~~~~~~~i~~~i~y~~~g~~~ 215 (265)
-+++|.++......+.-++-+-+++.+.|...
T Consensus 76 edGsLE~l~l~p~pl~~~vl~Kv~ahw~~t~lplvl~sPl~~lll~~~~ 124 (221)
T COG2386 76 EDGSLEQLMLSPLPLAAVVLGKVLAHWLLTGLPLVLASPLLALLLNMDV 124 (221)
T ss_pred hcCcHHHHHcCCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCH
Confidence 67788888776666666666666777777766
No 356
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=53.03 E-value=45 Score=19.48 Aligned_cols=21 Identities=14% Similarity=0.263 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 039187 136 AYTAVKFFFTTFTAVLLGSLS 156 (265)
Q Consensus 136 ~~~~~~l~~~~~~~ll~g~~f 156 (265)
.+.+..+..++++++++|++|
T Consensus 4 Sl~fa~iMVPVvma~ilglIy 24 (41)
T PF10766_consen 4 SLAFAVIMVPVVMALILGLIY 24 (41)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445666778899999999998
No 357
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=52.99 E-value=11 Score=29.80 Aligned_cols=45 Identities=11% Similarity=0.190 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeE
Q 039187 5 AASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQE 50 (265)
Q Consensus 5 ~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~ 50 (265)
...++++.++...++|..||+.+..|.+.+-+.+|.++.... ++.
T Consensus 84 ~t~~~i~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~~~-~~~ 128 (179)
T TIGR03127 84 ETESLVTVAKKAKEIGATVAAITTNPESTLGKLADVVVEIPA-ATK 128 (179)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeCC-ccc
Confidence 356778888887778999999999999999999999888876 443
No 358
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=51.52 E-value=24 Score=29.39 Aligned_cols=44 Identities=9% Similarity=0.156 Sum_probs=29.0
Q ss_pred chHHHHHHHHHHHHHhhCCCeEEEEecCCCHH------HHHhhhhhhhcc
Q 039187 2 DARAASIVIRTVRNTVDTGRTVVCTIHQPSIE------IFEAFDELFLMK 45 (265)
Q Consensus 2 D~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~------~~~~fd~~~~l~ 45 (265)
|+....++.+.++++++.|.|+++|.|+.... +-..+|.++.|.
T Consensus 135 d~~~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 135 SEVAVNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred chHHHHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 45556788999999988888888877654311 122346666555
No 359
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=49.92 E-value=22 Score=33.04 Aligned_cols=43 Identities=21% Similarity=0.364 Sum_probs=35.5
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHh-hhhhhhcc
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEA-FDELFLMK 45 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~-fd~~~~l~ 45 (265)
||-.......+.+++|++.+++|+++-|+.. ++++ .|.|.++.
T Consensus 244 LDi~qRl~~ar~Irel~~~~k~ViVVEHDLa--vLD~lsD~vhI~Y 287 (591)
T COG1245 244 LDIRQRLNAARVIRELAEDGKYVIVVEHDLA--VLDYLSDFVHILY 287 (591)
T ss_pred ccHHHHHHHHHHHHHHhccCCeEEEEechHH--HHHHhhheeEEEe
Confidence 7888999999999999999999999999984 5555 55555555
No 360
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=48.20 E-value=17 Score=28.97 Aligned_cols=46 Identities=7% Similarity=-0.013 Sum_probs=33.3
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCH-HHHHhhhhhhhccC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSI-EIFEAFDELFLMKQ 46 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~-~~~~~fd~~~~l~~ 46 (265)
+||.-..++.+.+++....|.+|++.+|.... ...+.||.++++..
T Consensus 86 lhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~ 132 (188)
T TIGR00152 86 LHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDV 132 (188)
T ss_pred hCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEEC
Confidence 46666777777777776567799999998742 35567888877775
No 361
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=48.12 E-value=21 Score=28.84 Aligned_cols=35 Identities=26% Similarity=0.363 Sum_probs=26.9
Q ss_pred HHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 10 IRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 10 ~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
++.+.+.+..|..++.|+|.++. .+..|+++.+..
T Consensus 89 ~~~~l~~a~~G~~v~~t~Ha~~~--~~~~~Rl~~l~~ 123 (198)
T cd01131 89 IRLALTAAETGHLVMSTLHTNSA--AKTIDRIIDVFP 123 (198)
T ss_pred HHHHHHHHHcCCEEEEEecCCcH--HHHHhHHHhhcC
Confidence 34444566789999999999974 477999988865
No 362
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=47.50 E-value=11 Score=35.18 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEecCCCHH-------H-HHhhhhhhhcc
Q 039187 5 AASIVIRTVRNTVDTGRTVVCTIHQPSIE-------I-FEAFDELFLMK 45 (265)
Q Consensus 5 ~~~~~~~~l~~l~~~~~tvi~~ihqp~~~-------~-~~~fd~~~~l~ 45 (265)
...++.++++.+.+.|.|++++.|++... + -.++|.|+.|.
T Consensus 142 ~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 142 VRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 34567888888888899999999987521 1 34678888886
No 363
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=47.05 E-value=52 Score=28.83 Aligned_cols=41 Identities=10% Similarity=0.010 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHh
Q 039187 116 YFTQFMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGSLS 156 (265)
Q Consensus 116 ~~~Q~~~L~~R~~~~~~R~~~~~~~~l~~~~~~~ll~g~~f 156 (265)
|..|-...+++.++..+|||...+..++...+.-+++|..+
T Consensus 9 ~~~~h~~~~~~~~~~l~rn~~~s~~si~~i~i~L~l~g~~~ 49 (309)
T PRK11026 9 FNEQVRYAWRGALADLKRKPLATLLTVMVIAISLTLPSVCY 49 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999988776666655555555444
No 364
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=46.81 E-value=15 Score=32.54 Aligned_cols=44 Identities=11% Similarity=0.010 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCe
Q 039187 5 AASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQ 49 (265)
Q Consensus 5 ~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~ 49 (265)
.+.++++.++...++|.++|..+..+.+.+-+.+|.++.+.. |.
T Consensus 104 eT~e~i~al~~ak~~Ga~~I~IT~~~~S~L~~~ad~~l~~~a-g~ 147 (340)
T PRK11382 104 KTEEVIKALELGRACGALTAAFTKRADSPITSAAEFSIDYQA-DC 147 (340)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEEEeCC-Cc
Confidence 456788888888888999999999999999999999998886 44
No 365
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=46.71 E-value=53 Score=33.19 Aligned_cols=49 Identities=6% Similarity=-0.004 Sum_probs=35.2
Q ss_pred chHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHH--hhhhhhhccCCCeEEE
Q 039187 2 DARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFE--AFDELFLMKQGRQEIY 52 (265)
Q Consensus 2 D~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~--~fd~~~~l~~gg~~~y 52 (265)
|+..+..+.+.++.+++.|.++++++|+|. ++.+ ..+.++-... .+++.
T Consensus 702 d~~~~~~i~~~lk~~RK~g~~vil~TQs~~-d~~~s~i~~~ilen~~-t~I~L 752 (852)
T PRK13891 702 HPAFRAKIREWLKVLRKANCLVLMATQSLS-DAANSGILDVIVESTA-TKIFL 752 (852)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHhhCchHHHHHHcCC-cceec
Confidence 677888999999999988999999999986 3443 3444444443 44444
No 366
>COG4664 FcbT3 TRAP-type mannitol/chloroaromatic compound transport system, large permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=46.71 E-value=86 Score=28.06 Aligned_cols=61 Identities=16% Similarity=0.311 Sum_probs=47.3
Q ss_pred HHHHHHHHhcCCCCCCCcChhhHHHhhhHHHHHHHH------------HHHHHHHHHhhHHHHHHHHHHHHHhhcc
Q 039187 148 TAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIIS------------SAFNTIMVEVPHIFVQSLVYSVIVDAMM 211 (265)
Q Consensus 148 ~~ll~g~~f~~~~~~~~~~~~~~~~~~g~l~~~~~~------------y~la~~~~~lp~~~~~~~i~~~i~y~~~ 211 (265)
.-+.+|++|+++... ++++..-..|.+..+... +.-.|+.+-....++.+.+|+.++|-+-
T Consensus 243 i~lVLGtIf~GiaTp---TE~gA~G~~GA~~LA~~~~~l~w~~~~~a~~~T~k~tsmV~~IllGa~~FSlvF~g~~ 315 (447)
T COG4664 243 IFLVLGTIFFGIATP---TEGGAVGAVGALLLALANGRLNWQMVKQALDATAKLTSMVLFILLGATVFSLVFYGLN 315 (447)
T ss_pred HHHHHHHHHhcccCC---cccchhhHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhheeecC
Confidence 456679999999776 456666667776666654 8888998888999999999999887654
No 367
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=46.53 E-value=30 Score=30.59 Aligned_cols=61 Identities=7% Similarity=0.138 Sum_probs=40.5
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhhCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLLL 71 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~~g 71 (265)
||...+..+.+.|.+.. .+.++|+++|+|. .+.... .++ -+.+...|+.. +++.++....|
T Consensus 125 Ld~~a~naLLk~LEep~-~~~~~Ilvth~~~-~ll~ti-----~SR-c~~~~~~~~~~--~~~~~~L~~~~ 185 (325)
T PRK08699 125 MNLQAANSLLKVLEEPP-PQVVFLLVSHAAD-KVLPTI-----KSR-CRKMVLPAPSH--EEALAYLRERG 185 (325)
T ss_pred CCHHHHHHHHHHHHhCc-CCCEEEEEeCChH-hChHHH-----HHH-hhhhcCCCCCH--HHHHHHHHhcC
Confidence 68889999999999985 4788999999987 343322 222 33333444421 56677887655
No 368
>TIGR03733 lanti_perm_MutG lantibiotic protection ABC transporter permease subunit, MutG family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene modeled separate by TIGR03732, while in some species only one subunit is found.
Probab=46.28 E-value=1.8e+02 Score=24.37 Aligned_cols=32 Identities=6% Similarity=-0.033 Sum_probs=19.7
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHh
Q 039187 124 LWKQWWSYWQNPAYTAVKFFFTTFTAVLLGSLS 156 (265)
Q Consensus 124 ~~R~~~~~~R~~~~~~~~l~~~~~~~ll~g~~f 156 (265)
++=+++..+|.+.... .++.+++..++....+
T Consensus 3 l~aE~lK~Krt~~~~l-~l~~Pl~~~ll~~~~~ 34 (248)
T TIGR03733 3 LKSDFIKLKRTSILWI-HICAPILGSLLFLLYY 34 (248)
T ss_pred HHHHHHHHcchhHHHH-HHHHHHHHHHHHHHHH
Confidence 3456666777765555 6777766666664433
No 369
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=45.33 E-value=63 Score=22.64 Aligned_cols=21 Identities=14% Similarity=0.018 Sum_probs=13.1
Q ss_pred CCeEEEecCCCCCcchHHHHHhhCC
Q 039187 47 GRQEIYVGLLGRHSCHLTRYFKLLL 71 (265)
Q Consensus 47 gg~~~y~G~~~~~~~~~~~yF~~~g 71 (265)
|+++...|+. .++.+-|+..|
T Consensus 71 g~~l~l~~~~----~~v~~~l~~~g 91 (100)
T cd06844 71 GGQFVLTGIS----PAVRITLTESG 91 (100)
T ss_pred CCEEEEECCC----HHHHHHHHHhC
Confidence 4666667766 66666665544
No 370
>COG4938 Uncharacterized conserved protein [Function unknown]
Probab=43.58 E-value=34 Score=29.80 Aligned_cols=29 Identities=21% Similarity=0.214 Sum_probs=26.4
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQ 29 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihq 29 (265)
|.|..+..+.++|.++|.+|+-||+.+|.
T Consensus 273 LHP~gQs~lg~llA~~a~~gvqvVveTHS 301 (374)
T COG4938 273 LHPEGQSKLGDLLAELAARGVQVVVETHS 301 (374)
T ss_pred cCchhHHHHHHHHHHHHhcCcEEEEEech
Confidence 56788899999999999999999999994
No 371
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=43.50 E-value=37 Score=25.47 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=16.2
Q ss_pred HHHHHHHhh-CCCeEEEEecCCCHH
Q 039187 10 IRTVRNTVD-TGRTVVCTIHQPSIE 33 (265)
Q Consensus 10 ~~~l~~l~~-~~~tvi~~ihqp~~~ 33 (265)
+..|.+.++ .|.|+++++|.++..
T Consensus 116 l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 116 LRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHHHHHHHhcCCceEEEEEecCCcc
Confidence 333333343 689999999998743
No 372
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=43.49 E-value=2.8e+02 Score=25.86 Aligned_cols=82 Identities=12% Similarity=0.227 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCCcChhhHHHhhhHH--HHHHHH-------------------HHHHHHHHHhh
Q 039187 136 AYTAVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFNATGSM--FTAIIS-------------------SAFNTIMVEVP 194 (265)
Q Consensus 136 ~~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~~~g~l--~~~~~~-------------------y~la~~~~~lp 194 (265)
...---....++++++.|.+..+.+.+.++....+.+-.+-+ +..++. |.++..+...|
T Consensus 280 ~~~~~~~~~fl~~~ii~~~i~~~~~~~~~~~~~~F~~G~~~~~~~a~vVgla~ai~v~~~~~~i~~tI~~~~~~~l~~~~ 359 (465)
T PF03606_consen 280 WYFPEIAALFLIIGIIIGLIRHRSGKSPNEIVKAFFKGMGDMLSFALVVGLARAISVFMEGGKIIDTIVHLLSNLLSGLP 359 (465)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCC
Confidence 444444566778888888888544443321233333333333 111111 88888888877
Q ss_pred HHHHHHHHHHHHHhhccCcccccc
Q 039187 195 HIFVQSLVYSVIVDAMMGFDRTAS 218 (265)
Q Consensus 195 ~~~~~~~i~~~i~y~~~g~~~~~~ 218 (265)
- .+..+....+...+.-+-+|..
T Consensus 360 ~-~~~~~~m~~~~~~~~fli~SGs 382 (465)
T PF03606_consen 360 G-VIAAIGMFLIQFLINFLIGSGS 382 (465)
T ss_pred H-HHHHHHHHHHHHHHeeecCCch
Confidence 7 4444444444333333444444
No 373
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=42.27 E-value=16 Score=33.91 Aligned_cols=41 Identities=7% Similarity=0.058 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhh-CCCeEEEEecCCCH-------HHHHhhhhhhhccC
Q 039187 6 ASIVIRTVRNTVD-TGRTVVCTIHQPSI-------EIFEAFDELFLMKQ 46 (265)
Q Consensus 6 ~~~~~~~l~~l~~-~~~tvi~~ihqp~~-------~~~~~fd~~~~l~~ 46 (265)
..+++..|+++++ .|.|++++.|.... .+-+++|.|+.|..
T Consensus 197 ~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~ 245 (454)
T TIGR00416 197 VRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEG 245 (454)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEec
Confidence 3456667888877 69999999996542 24567899998885
No 374
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=42.26 E-value=25 Score=26.97 Aligned_cols=41 Identities=17% Similarity=0.228 Sum_probs=30.6
Q ss_pred HHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhhCC-CCCCcchHHHhhc
Q 039187 32 IEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLLL-HPSGADFSDIYKR 84 (265)
Q Consensus 32 ~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~~g-~P~~~~~~~~~~~ 84 (265)
.++|.+||+- .. |++-+ .++-+-.+++| ||.+.+......+
T Consensus 14 ke~F~lfD~~---gD-~ki~~--------~q~gdvlRalG~nPT~aeV~k~l~~ 55 (152)
T KOG0030|consen 14 KEAFLLFDRT---GD-GKISG--------SQVGDVLRALGQNPTNAEVLKVLGQ 55 (152)
T ss_pred HHHHHHHhcc---Cc-ccccH--------HHHHHHHHHhcCCCcHHHHHHHHcC
Confidence 3788888887 43 66654 66778899999 9998877766543
No 375
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=41.56 E-value=33 Score=30.83 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=31.3
Q ss_pred chHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHH
Q 039187 2 DARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFE 36 (265)
Q Consensus 2 D~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~ 36 (265)
|..+|.-+-.+++.+-++|.++|+|...|+.+++.
T Consensus 140 DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~Ly~ 174 (362)
T PF03969_consen 140 DIADAMILKRLFEALFKRGVVLVATSNRPPEDLYK 174 (362)
T ss_pred chhHHHHHHHHHHHHHHCCCEEEecCCCChHHHcC
Confidence 67888888899999999999999999999988764
No 376
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=40.20 E-value=75 Score=21.66 Aligned_cols=19 Identities=16% Similarity=0.203 Sum_probs=9.5
Q ss_pred CeEEEecCCCCCcchHHHHHhhC
Q 039187 48 RQEIYVGLLGRHSCHLTRYFKLL 70 (265)
Q Consensus 48 g~~~y~G~~~~~~~~~~~yF~~~ 70 (265)
+++...|.+ +++.+-|+..
T Consensus 71 ~~v~i~~~~----~~~~~~l~~~ 89 (99)
T cd07043 71 GRLVLVNVS----PAVRRVLELT 89 (99)
T ss_pred CeEEEEcCC----HHHHHHHHHh
Confidence 455555555 4555555444
No 377
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=39.69 E-value=1.1e+02 Score=28.65 Aligned_cols=67 Identities=21% Similarity=0.260 Sum_probs=42.4
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEec----CCCCCcchHHHHHhhCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVG----LLGRHSCHLTRYFKLLL 71 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G----~~~~~~~~~~~yF~~~g 71 (265)
||+.....+.+.+|+.+. +++|.+++-|+.-. +--..|++++.. |+.=-+| |.+. -+.|-.|++.+|
T Consensus 486 LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~--GePg~~g~a~~P~~m-r~GMN~FLk~l~ 557 (591)
T COG1245 486 LDVEQRIIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE--GEPGKHGHASPPMSM-REGMNRFLKNLG 557 (591)
T ss_pred ccHHHHHHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe--cCCCccCcCCCCccH-HHHHHHHHHHcC
Confidence 799999999999999998 68899999998642 222245554443 2332211 1110 044556777777
No 378
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=39.63 E-value=80 Score=21.91 Aligned_cols=20 Identities=10% Similarity=-0.008 Sum_probs=10.9
Q ss_pred CeEEEecCCCCCcchHHHHHhhCC
Q 039187 48 RQEIYVGLLGRHSCHLTRYFKLLL 71 (265)
Q Consensus 48 g~~~y~G~~~~~~~~~~~yF~~~g 71 (265)
+++...|+. +.+.+-|+..|
T Consensus 74 ~~~~l~~~~----~~~~~~l~~~g 93 (107)
T cd07042 74 VELYLAGLN----PQVRELLERAG 93 (107)
T ss_pred CEEEEecCC----HHHHHHHHHcC
Confidence 455555555 55555555544
No 379
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=39.10 E-value=24 Score=27.91 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEE
Q 039187 5 AASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIY 52 (265)
Q Consensus 5 ~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y 52 (265)
...++++.++...+.|.+||..+..+.+.+-+..|.++.... +....
T Consensus 87 ~t~~~i~~~~~ak~~g~~iI~IT~~~~s~la~~ad~~l~~~~-~~~~~ 133 (179)
T cd05005 87 ETSSVVNAAEKAKKAGAKVVLITSNPDSPLAKLADVVVVIPA-ATKDD 133 (179)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeCC-ccccc
Confidence 346677888887778999999999999999999998888776 44443
No 380
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=37.87 E-value=52 Score=26.53 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=30.6
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeE
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQE 50 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~ 50 (265)
||..+...+-+.+.++.+..+..++=|-+-..+..+.+|+++-+.. |+.
T Consensus 164 LD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~-G~~ 212 (223)
T COG4619 164 LDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQP-GHA 212 (223)
T ss_pred cChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEecc-Ccc
Confidence 7899999999999999852000000000000144688999999998 765
No 381
>PRK13937 phosphoheptose isomerase; Provisional
Probab=37.85 E-value=27 Score=28.08 Aligned_cols=42 Identities=12% Similarity=0.194 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 5 AASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 5 ~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
...++++.++...++|.++|+.+..+.+.+-+..|.++....
T Consensus 118 ~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L~~~ad~~l~~~~ 159 (188)
T PRK13937 118 NSPNVLAALEKARELGMKTIGLTGRDGGKMKELCDHLLIVPS 159 (188)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEeCC
Confidence 345677777777778888888888887788777777766654
No 382
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=36.63 E-value=64 Score=23.09 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=37.7
Q ss_pred EEecCCCHHHHHhhhhhhhccCCCeEEE-ecCCCCCcchHHHHHhhCC--CCCC
Q 039187 25 CTIHQPSIEIFEAFDELFLMKQGRQEIY-VGLLGRHSCHLTRYFKLLL--HPSG 75 (265)
Q Consensus 25 ~~ihqp~~~~~~~fd~~~~l~~gg~~~y-~G~~~~~~~~~~~yF~~~g--~P~~ 75 (265)
+-||.|..++-++++++.=+.+ |++++ +.|. ..+......+| -|..
T Consensus 4 vLIHYp~~d~~~~l~~La~~t~-~~~ifTfAP~----T~~L~~m~~iG~lFP~~ 52 (97)
T PF07109_consen 4 VLIHYPAEDAAQMLAHLASRTR-GSLIFTFAPR----TPLLALMHAIGKLFPRP 52 (97)
T ss_pred eEeccCHHHHHHHHHHHHHhcc-CcEEEEECCC----CHHHHHHHHHhccCCCC
Confidence 3589999999999999999998 66666 6777 77888888888 5543
No 383
>PRK15482 transcriptional regulator MurR; Provisional
Probab=35.53 E-value=25 Score=30.21 Aligned_cols=45 Identities=7% Similarity=-0.025 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEE
Q 039187 6 ASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEI 51 (265)
Q Consensus 6 ~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~ 51 (265)
..++++.++...+.|..||+.+..+.+.+-+.+|.++.... ++..
T Consensus 195 t~~~~~~~~~a~~~g~~iI~IT~~~~s~la~~ad~~l~~~~-~~~~ 239 (285)
T PRK15482 195 KKEIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLDTVS-GETE 239 (285)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCCCchHHhCCEEEEcCC-Cccc
Confidence 45677888887778999999999999999999999988876 5543
No 384
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=35.10 E-value=26 Score=27.07 Aligned_cols=41 Identities=10% Similarity=0.115 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 6 ASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 6 ~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
..++++.++...++|.++|+.+..+.+.+-+.+|.++....
T Consensus 92 t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~ad~~l~~~~ 132 (154)
T TIGR00441 92 SKNVLKAIEAAKDKGMKTITLAGKDGGKMAGLADIELRVPH 132 (154)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeCC
Confidence 46677777777778988888888888888888888777665
No 385
>PHA02690 hypothetical protein; Provisional
Probab=34.93 E-value=1.5e+02 Score=20.27 Aligned_cols=37 Identities=19% Similarity=0.422 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcC
Q 039187 122 ACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGSLSWD 158 (265)
Q Consensus 122 ~L~~R~~~~~~R~~~~~~~~l~~~~~~~ll~g~~f~~ 158 (265)
+++.--++..|||+..-.+..+...+.-++.-++||+
T Consensus 54 V~myiv~Rl~~RN~gacamlAlaAA~~yLflcL~y~~ 90 (90)
T PHA02690 54 VVMYIVFRLIWRNPGACAMLALAAAVYYLFLCLFYWD 90 (90)
T ss_pred HHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455567778899888877777777777777776653
No 386
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=34.58 E-value=1e+02 Score=25.15 Aligned_cols=68 Identities=10% Similarity=0.111 Sum_probs=43.8
Q ss_pred chHHHHHHHHHHHHHhhCCCeEEEEecCCCH----HHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhhCC
Q 039187 2 DARAASIVIRTVRNTVDTGRTVVCTIHQPSI----EIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLLL 71 (265)
Q Consensus 2 D~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~----~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~~g 71 (265)
|.....++.+.++.+.+.++.|++.+|.+.. .+...+|.++.-.. +.+--.|..... ....+.++++|
T Consensus 52 ~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~-a~~gsiGv~~~~-~~~~~~l~k~G 123 (211)
T cd07019 52 SVTASEVIRAELAAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPS-TLTGSIGIFGVI-TTVENSLDSIG 123 (211)
T ss_pred CHHHHHHHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCC-CEEEEeEEEEEc-CCHHHHHHhcC
Confidence 4445556777777777778899999988752 55666777666554 666555543211 34566777777
No 387
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=34.32 E-value=27 Score=27.58 Aligned_cols=41 Identities=10% Similarity=0.157 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 6 ASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 6 ~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
..++++.++...++|.++|..+-.+.+.+.+..|.++.+..
T Consensus 114 t~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l~~~~ 154 (177)
T cd05006 114 SPNVLKALEAAKERGMKTIALTGRDGGKLLELADIEIHVPS 154 (177)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeCC
Confidence 45677777777778888888888887788888888777664
No 388
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=33.83 E-value=99 Score=21.73 Aligned_cols=67 Identities=15% Similarity=0.227 Sum_probs=37.2
Q ss_pred CchHHHHHHHHHHHHHhh-C-CCeEEEEecC---CCHHHHHhhhhhh--hccCCCeEEEecCCCCCcchHHHHHhhCC
Q 039187 1 LDARAASIVIRTVRNTVD-T-GRTVVCTIHQ---PSIEIFEAFDELF--LMKQGRQEIYVGLLGRHSCHLTRYFKLLL 71 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~-~~tvi~~ihq---p~~~~~~~fd~~~--~l~~gg~~~y~G~~~~~~~~~~~yF~~~g 71 (265)
||..++.++-+.+++... . .+.+++-.-. ..+.-......+. +-.+|+++...|+. .++.+-|+..|
T Consensus 18 L~f~~~~~~~~~l~~~~~~~~~~~vilDls~v~~iDssgi~~L~~~~~~~~~~g~~l~l~~~~----~~v~~~l~~~g 91 (106)
T TIGR02886 18 LDHHTAERVRRKIDDAIERRPIKHLILNLKNVTFMDSSGLGVILGRYKKIKNEGGEVIVCNVS----PAVKRLFELSG 91 (106)
T ss_pred cchhhHHHHHHHHHHHHHhCCCCEEEEECCCCcEecchHHHHHHHHHHHHHHcCCEEEEEeCC----HHHHHHHHHhC
Confidence 566777788888777643 2 2456653222 2221112111111 11246788888888 78888887766
No 389
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=33.31 E-value=23 Score=29.18 Aligned_cols=39 Identities=10% Similarity=0.044 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhh-CCCeEEEEecCCCH-------HHHHhhhhhhhcc
Q 039187 7 SIVIRTVRNTVD-TGRTVVCTIHQPSI-------EIFEAFDELFLMK 45 (265)
Q Consensus 7 ~~~~~~l~~l~~-~~~tvi~~ihqp~~-------~~~~~fd~~~~l~ 45 (265)
.+++..|++.++ .|.|++++.|.... .+-.++|.++.|.
T Consensus 142 r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 142 RKYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence 345555665544 79999999995431 2334567777776
No 390
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=33.06 E-value=51 Score=33.06 Aligned_cols=31 Identities=13% Similarity=0.117 Sum_probs=26.3
Q ss_pred Cc-hHHHHHHHHHHHHHhhCCCeEEEEecCCC
Q 039187 1 LD-ARAASIVIRTVRNTVDTGRTVVCTIHQPS 31 (265)
Q Consensus 1 LD-~~~~~~~~~~l~~l~~~~~tvi~~ihqp~ 31 (265)
|| +..+..+.+.++.+++.|.++++++|.|.
T Consensus 648 Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 679 (811)
T PRK13873 648 LDDPVFAAQLREWLKTLRKKNVSVIFATQSLA 679 (811)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 45 56788899999999888999999999985
No 391
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=32.68 E-value=33 Score=29.49 Aligned_cols=41 Identities=20% Similarity=0.227 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 6 ASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 6 ~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
..++++.++...+.|.+||+.+..+.+.+-+..|.++....
T Consensus 200 t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~~~ 240 (292)
T PRK11337 200 TSDVIEAVELAKKNGAKIICITNSYHSPIAKLADYVICSTA 240 (292)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEcCC
Confidence 35677777776678999999999999999999999888765
No 392
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=32.28 E-value=1.1e+02 Score=24.77 Aligned_cols=67 Identities=18% Similarity=0.210 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHhhCCCeEEEEecCCC----HHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhhCC
Q 039187 3 ARAASIVIRTVRNTVDTGRTVVCTIHQPS----IEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLLL 71 (265)
Q Consensus 3 ~~~~~~~~~~l~~l~~~~~tvi~~ihqp~----~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~~g 71 (265)
......+.+.++.+.+.++.|++.+|... ..+...+|.++.-.. +.+-..|..... -...++++.+|
T Consensus 49 ~~~~~~i~~~i~~~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~-s~~g~iG~~~~~-~~~~~~l~k~G 119 (208)
T cd07023 49 VVASEEIYREIRRLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPT-TITGSIGVIGQG-PNLEELLDKLG 119 (208)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCC-CeEEeCcEEEec-CCHHHHHHhcC
Confidence 34455667777777777888888888764 255566887666664 655444443111 34567777787
No 393
>COG1485 Predicted ATPase [General function prediction only]
Probab=31.92 E-value=67 Score=28.76 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=31.1
Q ss_pred chHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHH
Q 039187 2 DARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFE 36 (265)
Q Consensus 2 D~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~ 36 (265)
|...|-.+-.+++.|-.+|.++++|...++.+++.
T Consensus 143 DI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~LY~ 177 (367)
T COG1485 143 DIADAMILGRLLEALFARGVVLVATSNTAPDNLYK 177 (367)
T ss_pred ChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHhcc
Confidence 77888889999999999999999999999987654
No 394
>PF12730 ABC2_membrane_4: ABC-2 family transporter protein
Probab=31.66 E-value=2.5e+02 Score=21.89 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=16.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Q 039187 184 SAFNTIMVEVPHIFVQSLVYSVI 206 (265)
Q Consensus 184 y~la~~~~~lp~~~~~~~i~~~i 206 (265)
++.+|.++.....++..++...+
T Consensus 92 ~~~~K~~~~~~~~~~~~~~~~~~ 114 (232)
T PF12730_consen 92 IFLAKFIVILIIILLLFLISFLI 114 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999988877666666554333
No 395
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=31.62 E-value=72 Score=26.00 Aligned_cols=29 Identities=10% Similarity=0.091 Sum_probs=20.3
Q ss_pred chHHHHH-HHHHHHHHhhCCCeEEEEecCC
Q 039187 2 DARAASI-VIRTVRNTVDTGRTVVCTIHQP 30 (265)
Q Consensus 2 D~~~~~~-~~~~l~~l~~~~~tvi~~ihqp 30 (265)
|+..... ....++.+.+.|.++|+++|..
T Consensus 122 ~~~~~~~l~~~il~~l~~~~~~~i~~TH~~ 151 (204)
T cd03282 122 SSADGFAISLAILECLIKKESTVFFATHFR 151 (204)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEECChH
Confidence 3434333 3456777777899999999975
No 396
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=31.43 E-value=1.3e+02 Score=18.50 Aligned_cols=36 Identities=6% Similarity=0.101 Sum_probs=21.8
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHH-HHHHHHHHhcCC
Q 039187 124 LWKQWWSYWQNPAYTAVKFFFTTF-TAVLLGSLSWDL 159 (265)
Q Consensus 124 ~~R~~~~~~R~~~~~~~~l~~~~~-~~ll~g~~f~~~ 159 (265)
.++.+++..|||...+..++..++ +..++|-++..-
T Consensus 5 ~~~~~~~f~~nk~a~~gl~il~~~vl~ai~~p~~~p~ 41 (56)
T PF12911_consen 5 WKDAWRRFRRNKLAVIGLIILLILVLLAIFAPFISPY 41 (56)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 567777788999877665544444 334445455443
No 397
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=30.24 E-value=61 Score=27.31 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhh-CCCeEEEEecCC
Q 039187 6 ASIVIRTVRNTVD-TGRTVVCTIHQP 30 (265)
Q Consensus 6 ~~~~~~~l~~l~~-~~~tvi~~ihqp 30 (265)
..+++..|+++++ .|.||+++.|..
T Consensus 166 ~~~~~~~L~~la~~~~vtvll~sq~~ 191 (271)
T cd01122 166 LDEIMTKLRGFATEHGIHITLVSHLR 191 (271)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 3567788999987 588999888754
No 398
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=30.07 E-value=54 Score=31.24 Aligned_cols=40 Identities=28% Similarity=0.491 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 4 RAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 4 ~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
.+|..|-+.|++|++ +.=|+|++|+|. +-.+.|.=+.+.+
T Consensus 469 ~~A~aVg~~L~~Ls~-~~QVl~VTHlPQ--VAa~ad~H~~V~K 508 (557)
T COG0497 469 RVAQAVGKKLRRLSE-HHQVLCVTHLPQ--VAAMADTHFLVEK 508 (557)
T ss_pred HHHHHHHHHHHHHhc-CceEEEEecHHH--HHhhhcceEEEEE
Confidence 467889999999986 445899999995 4566666666655
No 399
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=29.95 E-value=1.6e+02 Score=27.20 Aligned_cols=51 Identities=14% Similarity=0.127 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhh-hccCCCeEEEecCC
Q 039187 5 AASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELF-LMKQGRQEIYVGLL 56 (265)
Q Consensus 5 ~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~-~l~~gg~~~y~G~~ 56 (265)
+..++...+..+.+.|+.+|++++.++.++-.+-|++. -+.. |-++...||
T Consensus 212 ~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~-gl~v~i~~p 263 (440)
T PRK14088 212 VQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQM-GLVAKLEPP 263 (440)
T ss_pred HHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhc-CceEeeCCC
Confidence 45678888888888788788877666566655556665 3554 788888888
No 400
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=29.55 E-value=38 Score=29.05 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=15.2
Q ss_pred HHHHHHHHhhCCCeEEEEecCCC
Q 039187 9 VIRTVRNTVDTGRTVVCTIHQPS 31 (265)
Q Consensus 9 ~~~~l~~l~~~~~tvi~~ihqp~ 31 (265)
+...++.+ ++|.++|+|+|.+.
T Consensus 209 ~~~l~~~~-~~G~~vI~ttH~~~ 230 (270)
T TIGR02858 209 VEALLEAL-HAGVSIIATAHGRD 230 (270)
T ss_pred HHHHHHHH-hCCCEEEEEechhH
Confidence 33344443 47999999999864
No 401
>PRK13938 phosphoheptose isomerase; Provisional
Probab=29.47 E-value=38 Score=27.54 Aligned_cols=42 Identities=21% Similarity=0.219 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 5 AASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 5 ~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
.+.++++.++...+.|.++|+.+..+.+.+.+..|.++.+..
T Consensus 125 ~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~La~~aD~~l~v~~ 166 (196)
T PRK13938 125 NSMSVLRAAKTARELGVTVVAMTGESGGQLAEFADFLINVPS 166 (196)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhhCCEEEEeCC
Confidence 356777888887778888888888888888888777776654
No 402
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=29.24 E-value=40 Score=29.41 Aligned_cols=42 Identities=10% Similarity=0.037 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 5 AASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 5 ~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
.+.++++.++...++|.+||+.+..+.+.+-+++|.++....
T Consensus 101 ~t~~~~~~~~~ak~~g~~vI~iT~~~~s~la~~ad~~l~~~~ 142 (321)
T PRK11543 101 GAKELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVLDISV 142 (321)
T ss_pred CcHHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEcCC
Confidence 456788888888889999999999999999999999987764
No 403
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=28.10 E-value=2.2e+02 Score=20.20 Aligned_cols=66 Identities=18% Similarity=0.182 Sum_probs=45.3
Q ss_pred CchHHHHHHHHHHHHHhhCC----------CeEEEEecCCCH------HHHHhhhhhhhccCCCeEEEecCCCCCcchHH
Q 039187 1 LDARAASIVIRTVRNTVDTG----------RTVVCTIHQPSI------EIFEAFDELFLMKQGRQEIYVGLLGRHSCHLT 64 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~----------~tvi~~ihqp~~------~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~ 64 (265)
|+..++.++.+.+.+....+ +.+|+-++.-+. ..+..+-+-+- .+|+++...|+. +++.
T Consensus 19 l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgi~~L~~~~~~~~-~~g~~~~l~~~~----~~v~ 93 (117)
T PF01740_consen 19 LFFANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSGVSFIDSSGIQALVDIIKELR-RRGVQLVLVGLN----PDVR 93 (117)
T ss_dssp ESHHHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETTESEESHHHHHHHHHHHHHHH-HTTCEEEEESHH----HHHH
T ss_pred EEHHHHHHHHHHHHHhhhcccccccccccceEEEEEEEeCCcCCHHHHHHHHHHHHHHH-HCCCEEEEEECC----HHHH
Confidence 57788899999999988754 678887766542 12222222222 346899999988 8888
Q ss_pred HHHhhCC
Q 039187 65 RYFKLLL 71 (265)
Q Consensus 65 ~yF~~~g 71 (265)
+-|+..|
T Consensus 94 ~~l~~~~ 100 (117)
T PF01740_consen 94 RILERSG 100 (117)
T ss_dssp HHHHHTT
T ss_pred HHHHHcC
Confidence 8888776
No 404
>PRK06193 hypothetical protein; Provisional
Probab=27.74 E-value=63 Score=26.55 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhhCCCeEEEEecCCCHH
Q 039187 7 SIVIRTVRNTVDTGRTVVCTIHQPSIE 33 (265)
Q Consensus 7 ~~~~~~l~~l~~~~~tvi~~ihqp~~~ 33 (265)
.++.+.|+++.+.+.+++++.|.|..+
T Consensus 142 ~~l~~~I~~l~~~~~~vLlVgHnp~i~ 168 (206)
T PRK06193 142 AGLRPLLTTPPDPGTNTVLVGHDDNLE 168 (206)
T ss_pred HHHHHHHhhCCCCCCeEEEEeCchHHH
Confidence 566777777777788999999999655
No 405
>PRK13764 ATPase; Provisional
Probab=27.61 E-value=80 Score=30.55 Aligned_cols=45 Identities=13% Similarity=0.217 Sum_probs=34.2
Q ss_pred HHHHHHHhhCCCeEEEEec---------------CCCHHHHHhhhhhhhccCCCeE--EEecCC
Q 039187 10 IRTVRNTVDTGRTVVCTIH---------------QPSIEIFEAFDELFLMKQGRQE--IYVGLL 56 (265)
Q Consensus 10 ~~~l~~l~~~~~tvi~~ih---------------qp~~~~~~~fd~~~~l~~gg~~--~y~G~~ 56 (265)
++.+..++..|..++.|+| ..+ .+.+.+|.++.+.+ |++ +|.+..
T Consensus 339 ~~~~~~l~~ag~GvigTlHA~sa~~Ai~Rl~~~v~lg-~i~~iID~IV~I~~-G~I~~v~~~~~ 400 (602)
T PRK13764 339 FKIFADMRLAGVGMVGVVHATRPIDAIQRFIGRVELG-MIPQIVDTVIFIED-GEVSKVYDLEF 400 (602)
T ss_pred HHHHHHHHHcCCeEEEEECCCCHHHHHHHHHhhhhhc-hHHHhhcEEEEEeC-CEEEEEEeeee
Confidence 4555556667888999999 443 56678999999998 888 787764
No 406
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=27.60 E-value=1.5e+02 Score=20.97 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=40.1
Q ss_pred CchHHHHHHHHHHHHHhh--CCCeEEEEecCC---CHHHHHhhhhhhh--ccCCCeEEEecCCCCCcchHHHHHhhCC
Q 039187 1 LDARAASIVIRTVRNTVD--TGRTVVCTIHQP---SIEIFEAFDELFL--MKQGRQEIYVGLLGRHSCHLTRYFKLLL 71 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~--~~~tvi~~ihqp---~~~~~~~fd~~~~--l~~gg~~~y~G~~~~~~~~~~~yF~~~g 71 (265)
||..++.++-+.+.+... ..+.+|+-...- .+.-...+.++.- -..||++...|.. .++.+-|+..|
T Consensus 20 L~~~~a~~~~~~l~~~~~~~~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l~l~g~~----~~v~~~l~~~g 93 (109)
T cd07041 20 LDDERAEQLQERLLEAISRRRARGVIIDLTGVPVIDSAVARHLLRLARALRLLGARTILTGIR----PEVAQTLVELG 93 (109)
T ss_pred ECHHHHHHHHHHHHHHHHHcCCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeEEEEeCC----HHHHHHHHHhC
Confidence 577788888886654442 345677744322 2222222222221 1246899999998 88888888776
No 407
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=27.31 E-value=51 Score=28.04 Aligned_cols=50 Identities=14% Similarity=0.207 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 6 ASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 6 ~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
+..+++.++...+.|..+|..+..|.+.+-+..|..+.+.. |.-+..|.+
T Consensus 131 T~~vi~al~~Ak~~Ga~~I~It~~~~s~L~~~aD~~I~~~~-g~E~~~~st 180 (257)
T cd05007 131 TPYVLGALRYARARGALTIGIACNPGSPLLQLADIAIALIT-GPEVVAGST 180 (257)
T ss_pred CHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEEcCC-CCccccCcc
Confidence 45677888887778999999999999999999999998886 555544543
No 408
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=27.29 E-value=76 Score=26.23 Aligned_cols=30 Identities=10% Similarity=0.101 Sum_probs=21.5
Q ss_pred chHHHHHHHHH-HHHHhhC-CCeEEEEecCCC
Q 039187 2 DARAASIVIRT-VRNTVDT-GRTVVCTIHQPS 31 (265)
Q Consensus 2 D~~~~~~~~~~-l~~l~~~-~~tvi~~ihqp~ 31 (265)
|+.....+... ++.+.+. +.++++++|.+.
T Consensus 123 ~~~dg~~la~ail~~L~~~~~~~~i~~TH~~e 154 (218)
T cd03286 123 STHDGYAIAHAVLEYLVKKVKCLTLFSTHYHS 154 (218)
T ss_pred CchHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 44455555555 7777775 899999999864
No 409
>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4). MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS
Probab=27.09 E-value=1.9e+02 Score=22.64 Aligned_cols=61 Identities=16% Similarity=0.190 Sum_probs=40.1
Q ss_pred HHHHhh--CCCeEEEEecCCCHHHHHhhhhhhhccC--CC------eEEEecCCCCCcchHHHHHhhCCCC
Q 039187 13 VRNTVD--TGRTVVCTIHQPSIEIFEAFDELFLMKQ--GR------QEIYVGLLGRHSCHLTRYFKLLLHP 73 (265)
Q Consensus 13 l~~l~~--~~~tvi~~ihqp~~~~~~~fd~~~~l~~--gg------~~~y~G~~~~~~~~~~~yF~~~g~P 73 (265)
+..+.. .|.+.++.++....++.+.++..-.-+. .| -++-.||++.-+..+.++|+++|-|
T Consensus 69 ~~~L~~~l~G~~~lift~~dp~~v~k~l~~~~~~~~ar~G~iA~~dvvi~~G~~~~~p~~~~~~~~~lgip 139 (163)
T cd05796 69 LHKLSKYLKGQVGLLFTNEPPEEVIEYFDSYSEPDFARAGSIATETVTLPEGPLEQFPHSMEPQLRKLGLP 139 (163)
T ss_pred HHHHHHHhCCCEEEEEECCCHHHHHHHHHHcCCcccccCCCCCCceEEEeCCCCCCCCCCcchHHHHcCCC
Confidence 334443 5888787777767788888877655432 23 3455677544446788899999855
No 410
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=26.41 E-value=46 Score=27.46 Aligned_cols=26 Identities=8% Similarity=0.101 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhh-CCCeEEEEecCCC
Q 039187 6 ASIVIRTVRNTVD-TGRTVVCTIHQPS 31 (265)
Q Consensus 6 ~~~~~~~l~~l~~-~~~tvi~~ihqp~ 31 (265)
..++++.|+++|+ .|.+|+++.|-+.
T Consensus 148 ~~~~~~~L~~la~~~~~~ii~~~q~~r 174 (242)
T cd00984 148 VAEISRSLKLLAKELNVPVIALSQLSR 174 (242)
T ss_pred HHHHHHHHHHHHHHhCCeEEEecccCh
Confidence 3567888999998 5888887776543
No 411
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=26.30 E-value=1.3e+02 Score=30.27 Aligned_cols=48 Identities=8% Similarity=0.137 Sum_probs=31.5
Q ss_pred CchHHHHHHH-HHHHHHhhCCCeEEEEecCCCHHHHHh-hhhhhhccCCCeEEE
Q 039187 1 LDARAASIVI-RTVRNTVDTGRTVVCTIHQPSIEIFEA-FDELFLMKQGRQEIY 52 (265)
Q Consensus 1 LD~~~~~~~~-~~l~~l~~~~~tvi~~ihqp~~~~~~~-fd~~~~l~~gg~~~y 52 (265)
+|+.....+. ..++.+.+.|.++|+++|.+. +... .|+..+. + +.+.+
T Consensus 420 tDp~eg~ala~aile~l~~~~~~vIitTH~~e--l~~~~~~~~~v~-~-~~~~~ 469 (782)
T PRK00409 420 TDPDEGAALAISILEYLRKRGAKIIATTHYKE--LKALMYNREGVE-N-ASVEF 469 (782)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEECChHH--HHHHHhcCCCeE-E-EEEEE
Confidence 4777777775 467777778999999999964 3333 3444433 3 56655
No 412
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=25.71 E-value=72 Score=26.17 Aligned_cols=44 Identities=9% Similarity=0.206 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 3 ARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 3 ~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
|..+.++...+..+-+.|.++|..+-.|.+.+-+..|-++.+..
T Consensus 96 SGeT~el~~~~~~aK~~g~~liaiT~~~~SsLak~aDvvl~ip~ 139 (202)
T COG0794 96 SGETKELLNLAPKAKRLGAKLIAITSNPDSSLAKAADVVLVIPV 139 (202)
T ss_pred CCcHHHHHHHHHHHHHcCCcEEEEeCCCCChHHHhcCeEEEccC
Confidence 34556777777777778999999999999999999999999885
No 413
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=25.38 E-value=2.2e+02 Score=23.37 Aligned_cols=66 Identities=15% Similarity=0.131 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEEecCCCH---HHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhhCC
Q 039187 4 RAASIVIRTVRNTVDTGRTVVCTIHQPSI---EIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLLL 71 (265)
Q Consensus 4 ~~~~~~~~~l~~l~~~~~tvi~~ihqp~~---~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~~g 71 (265)
....++.+.++++++.++.|++......+ .+-..+|+|+.-.. |.+-..|..... ....+.++.+|
T Consensus 62 ~~~~el~~~i~~~~~~~kpVia~~~~~~sggy~lasaad~I~a~p~-~~vg~iGv~~~~-~~~~~ll~klG 130 (222)
T cd07018 62 AKLEELRQALERFRASGKPVIAYADGYSQGQYYLASAADEIYLNPS-GSVELTGLSAET-LFFKGLLDKLG 130 (222)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEeCCCCchhhhhhhhCCEEEECCC-ceEEeeccchhh-hhHHHHHHHcC
Confidence 34566777788777677877777765543 34455777776664 777666654211 34455666777
No 414
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=25.33 E-value=1.2e+02 Score=21.66 Aligned_cols=39 Identities=8% Similarity=0.171 Sum_probs=26.9
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhh
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDEL 41 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~ 41 (265)
+|+.....+.+..+++.++|..+.++-= +..+.+.+.+.
T Consensus 61 iDssgi~~L~~~~~~~~~~g~~~~l~~~--~~~v~~~l~~~ 99 (117)
T PF01740_consen 61 IDSSGIQALVDIIKELRRRGVQLVLVGL--NPDVRRILERS 99 (117)
T ss_dssp ESHHHHHHHHHHHHHHHHTTCEEEEESH--HHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEEC--CHHHHHHHHHc
Confidence 5888899999999999888777665532 33444544443
No 415
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=24.39 E-value=52 Score=28.29 Aligned_cols=42 Identities=10% Similarity=0.161 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 5 AASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 5 ~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
.+.++++.++...++|.+||+.++...+.+-+..|.++....
T Consensus 189 ~t~e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad~~L~~~~ 230 (281)
T COG1737 189 YTREIVEAAELAKERGAKVIAITDSADSPLAKLADIVLLVPV 230 (281)
T ss_pred CcHHHHHHHHHHHHCCCcEEEEcCCCCCchhhhhceEEeccC
Confidence 456788888888889999999999988899999999988865
No 416
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=24.34 E-value=99 Score=22.50 Aligned_cols=40 Identities=10% Similarity=0.184 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 7 SIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 7 ~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
.++++.++...++|..+++.+..+...+-+..|..+.+..
T Consensus 74 ~~~~~~~~~a~~~g~~iv~iT~~~~~~l~~~~d~~i~~~~ 113 (139)
T cd05013 74 KETVEAAEIAKERGAKVIAITDSANSPLAKLADIVLLVSS 113 (139)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCChhHHhcCEEEEcCC
Confidence 4566777776667888888888888888888888777765
No 417
>COG3113 Predicted NTP binding protein (contains STAS domain) [General function prediction only]
Probab=24.25 E-value=2e+02 Score=20.64 Aligned_cols=37 Identities=11% Similarity=0.232 Sum_probs=25.5
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhh
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFD 39 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd 39 (265)
.||+.-..+++.++...++|+ .++++-|+..+..+++
T Consensus 52 vDSaglALL~~~~~~~k~~g~--~~~L~~~p~~L~tLa~ 88 (99)
T COG3113 52 VDSAGLALLLHLIRLAKKQGN--AVTLTGVPEQLRTLAE 88 (99)
T ss_pred echHHHHHHHHHHHHHHHcCC--eeEEecCcHHHHHHHH
Confidence 477777777777777666777 5566777777766554
No 418
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=24.23 E-value=89 Score=31.23 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=27.1
Q ss_pred CchHHHHHH-HHHHHHHhhCCCeEEEEecCCCHHHH
Q 039187 1 LDARAASIV-IRTVRNTVDTGRTVVCTIHQPSIEIF 35 (265)
Q Consensus 1 LD~~~~~~~-~~~l~~l~~~~~tvi~~ihqp~~~~~ 35 (265)
+|+.....+ ...|+.+.+.|.++|+++|.+.-..+
T Consensus 415 tD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~ 450 (771)
T TIGR01069 415 TDPDEGSALAISILEYLLKQNAQVLITTHYKELKAL 450 (771)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence 477777777 57888888889999999999754443
No 419
>PRK08727 hypothetical protein; Validated
Probab=23.87 E-value=3e+02 Score=22.76 Aligned_cols=51 Identities=16% Similarity=0.079 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhh-hccCCCeEEEecCC
Q 039187 5 AASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELF-LMKQGRQEIYVGLL 56 (265)
Q Consensus 5 ~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~-~l~~gg~~~y~G~~ 56 (265)
+...+.+++.+....|..+|+|.+.|+.+.-....++. -+.. |.++-..|+
T Consensus 111 ~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~-~~~~~l~~~ 162 (233)
T PRK08727 111 DEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQ-CIRIGLPVL 162 (233)
T ss_pred HHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhc-CceEEecCC
Confidence 34455566555555677778887777766544444443 3343 555555555
No 420
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=23.81 E-value=77 Score=24.68 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=20.1
Q ss_pred HHHHHHHHHhhCCCeEEEEecCCC
Q 039187 8 IVIRTVRNTVDTGRTVVCTIHQPS 31 (265)
Q Consensus 8 ~~~~~l~~l~~~~~tvi~~ihqp~ 31 (265)
.+.+.|+++.+.|..|++.++|-.
T Consensus 33 ~v~~~L~~l~~~Gy~IvIvTNQ~g 56 (159)
T PF08645_consen 33 GVPEALRELHKKGYKIVIVTNQSG 56 (159)
T ss_dssp THHHHHHHHHHTTEEEEEEEE-CC
T ss_pred hHHHHHHHHHhcCCeEEEEeCccc
Confidence 378899999889999999999954
No 421
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=23.61 E-value=1.1e+02 Score=32.19 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=30.2
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhh
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELF 42 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~ 42 (265)
||.++..++.+++++.+. +.=.|+++|++. .+...|+++
T Consensus 1101 LD~~Nv~r~~~~i~e~s~-~sQFIvIThr~~--~m~~ad~l~ 1139 (1163)
T COG1196 1101 LDDANVERVARLIKEMSK-ETQFIVITHRKG--TMEAADRLV 1139 (1163)
T ss_pred ccHHHHHHHHHHHHHhCc-CCeEEEEEcChH--HHHHHHHHe
Confidence 799999999999999984 434666677764 567777776
No 422
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=23.26 E-value=1.1e+02 Score=25.28 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=17.2
Q ss_pred HHHHHHHhhC-CCeEEEEecCCC
Q 039187 10 IRTVRNTVDT-GRTVVCTIHQPS 31 (265)
Q Consensus 10 ~~~l~~l~~~-~~tvi~~ihqp~ 31 (265)
...++.+.+. +.++|+++|.+.
T Consensus 133 ~~il~~l~~~~~~~~i~~TH~~~ 155 (222)
T cd03287 133 YATLHYLLEEKKCLVLFVTHYPS 155 (222)
T ss_pred HHHHHHHHhccCCeEEEEcccHH
Confidence 4566777765 889999999875
No 423
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=23.17 E-value=1.1e+02 Score=25.00 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=20.8
Q ss_pred CchHHHHHH-HHHHHHHhhC---CCeEEEEecCCC
Q 039187 1 LDARAASIV-IRTVRNTVDT---GRTVVCTIHQPS 31 (265)
Q Consensus 1 LD~~~~~~~-~~~l~~l~~~---~~tvi~~ihqp~ 31 (265)
+|+.....+ ...++++.+. +.++|+++|.+.
T Consensus 121 td~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~ 155 (213)
T cd03281 121 TDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHE 155 (213)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHH
Confidence 355543334 5678888764 358999999874
No 424
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=23.09 E-value=63 Score=26.08 Aligned_cols=41 Identities=10% Similarity=0.103 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 6 ASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 6 ~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
...+++.++...++|..+|..+..+.+.+-+..|.++.+..
T Consensus 124 t~~~i~~~~~ak~~g~~iI~iT~~~~s~l~~~ad~~l~~~~ 164 (192)
T PRK00414 124 SGNIIKAIEAARAKGMKVITLTGKDGGKMAGLADIEIRVPH 164 (192)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEeCC
Confidence 45667777777778888888888888888888888777665
No 425
>PRK10949 protease 4; Provisional
Probab=22.78 E-value=2e+02 Score=27.98 Aligned_cols=65 Identities=14% Similarity=0.109 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEecCCC---HHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhhCC
Q 039187 5 AASIVIRTVRNTVDTGRTVVCTIHQPS---IEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLLL 71 (265)
Q Consensus 5 ~~~~~~~~l~~l~~~~~tvi~~ihqp~---~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~~g 71 (265)
+..++.+.|++..++|+.|++.....+ +-+-..+|+|++-.. |.+-..|-.... -...+-++.+|
T Consensus 130 ~~~eI~~ai~~fk~sGKpVvA~~~~~~s~~YyLASaAD~I~l~P~-G~v~~~G~~~~~-~~~k~lLdKlG 197 (618)
T PRK10949 130 SMQYIGKALREFRDSGKPVYAVGDSYSQGQYYLASFANKIYLSPQ-GVVDLHGFATNG-LYYKSLLDKLK 197 (618)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEecCccchhhhhhhhCCEEEECCC-ceEEEeeeecch-hhHHHHHHHcC
Confidence 457888999999888998888766554 345566999998886 888887866211 22456666777
No 426
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=22.67 E-value=2.3e+02 Score=22.98 Aligned_cols=66 Identities=14% Similarity=0.147 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHHhhCCCeEEEEecCCC----HHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhhCC
Q 039187 3 ARAASIVIRTVRNTVDTGRTVVCTIHQPS----IEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLLL 71 (265)
Q Consensus 3 ~~~~~~~~~~l~~l~~~~~tvi~~ihqp~----~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~~g 71 (265)
.....++.+.|+++. +|+.|++.++... ..+...+|+++.-.. +.+-..|..... ....+.++.+|
T Consensus 45 ~~~~~~l~~~i~~~~-~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~-a~vg~iGv~~~~-~~~~~~l~k~G 114 (207)
T TIGR00706 45 VVASEEIYEKLKKLK-AKKPVVASMGGVAASGGYYIAMAADEIVANPG-TITGSIGVILQG-ANVEKLYEKLG 114 (207)
T ss_pred HHHHHHHHHHHHHhc-CCCCEEEEECCccchHHHHHHhcCCEEEECCC-CeEEeeeEEEec-CCHHHHHHhCC
Confidence 345566667676665 4677777776654 344455777665554 554333433111 34566677777
No 427
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=22.41 E-value=1.9e+02 Score=23.59 Aligned_cols=64 Identities=13% Similarity=0.159 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEecCC----CHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhhCC
Q 039187 5 AASIVIRTVRNTVDTGRTVVCTIHQP----SIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLLL 71 (265)
Q Consensus 5 ~~~~~~~~l~~l~~~~~tvi~~ihqp----~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~~g 71 (265)
...++.+.++++.+ ++.|++.++.. ...+...+|+++.-.. +..--.|..... ....++++.+|
T Consensus 59 ~~~~l~~~l~~~~~-~KpViA~v~g~a~s~gy~lA~~aD~i~a~~~-a~~g~iG~~~~~-~~~~~ll~k~G 126 (214)
T cd07022 59 GVFELADAIRAARA-GKPIVAFVNGLAASAAYWIASAADRIVVTPT-AGVGSIGVVASH-VDQSKALEKAG 126 (214)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEECCchhhHHHHHHhcCCEEEEcCC-CeEEeeeEEEec-CCHHHHHHhCC
Confidence 34455566666655 66666666643 2244445665554332 444333322111 34556666666
No 428
>PF15203 TMEM95: TMEM95 family
Probab=22.40 E-value=43 Score=24.94 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=25.3
Q ss_pred CCCCCcchhhhhhhcHHHHHHHHHhhhhcCC
Q 039187 231 GPRIPIRWRWYYWANPIAWTLYGLIAPRLGM 261 (265)
Q Consensus 231 ~~~ip~~~~w~~~lsp~~y~~~al~~~ef~~ 261 (265)
.+.+|.+|+|++..-...|.-||+....-+|
T Consensus 65 ~S~lP~Yw~WL~ktklP~YtREalcapacrg 95 (152)
T PF15203_consen 65 FSSLPLYWQWLQKTKLPQYTREALCAPACRG 95 (152)
T ss_pred cccCcHHHHHHHhcccchhhhhhcCCcccCC
Confidence 4578999999999998999999987755444
No 429
>PF09847 DUF2074: Predicted permease (DUF2074); InterPro: IPR018646 This family has no known function.
Probab=22.11 E-value=6.4e+02 Score=23.42 Aligned_cols=44 Identities=9% Similarity=0.099 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCC
Q 039187 116 YFTQFMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGSLSWDLG 160 (265)
Q Consensus 116 ~~~Q~~~L~~R~~~~~~R~~~~~~~~l~~~~~~~ll~g~~f~~~~ 160 (265)
...-...+.++.+|...|+++.+. -++.|+..++..-....+.+
T Consensus 246 ~~~~~~al~~KDlK~~~R~sq~l~-~~L~Pl~~~i~~i~~~~~~~ 289 (449)
T PF09847_consen 246 IRSPLLALFKKDLKILFRKSQLLF-GFLYPLVFVIPFIFMILSSG 289 (449)
T ss_pred cCcchHHHHHHHHHHHHcchhHHH-HHHHHHHHHHHHHHHHhhcC
Confidence 344556889999999999998875 57777766666544443333
No 430
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=22.10 E-value=64 Score=31.08 Aligned_cols=44 Identities=11% Similarity=0.179 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCe
Q 039187 5 AASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQ 49 (265)
Q Consensus 5 ~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~ 49 (265)
.+.++++.++...+.|..+|..+..+.+.+-+.+|.++.+.. |.
T Consensus 348 ~T~e~i~a~~~ak~~ga~~IaIT~~~~S~La~~aD~~l~~~~-~~ 391 (604)
T PRK00331 348 ETADTLAALRLAKELGAKTLAICNVPGSTIARESDAVLYTHA-GP 391 (604)
T ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCChhHHhcCcEEEecC-cC
Confidence 456778888888778999999999999999999999888875 44
No 431
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=21.74 E-value=68 Score=30.91 Aligned_cols=44 Identities=9% Similarity=0.165 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCe
Q 039187 5 AASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQ 49 (265)
Q Consensus 5 ~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~ 49 (265)
.+.++++.++...+.|..+|..+..|.+.+-+.+|.++.+.. |.
T Consensus 350 ~T~e~v~a~~~ak~~ga~~IaIT~~~~S~La~~ad~~l~~~~-~~ 393 (607)
T TIGR01135 350 ETADTLAALRLAKELGAKTLGICNVPGSTLVRESDHTLYTRA-GP 393 (607)
T ss_pred CCHHHHHHHHHHHHcCCcEEEEECCCCChHHhhcCceEEecC-CC
Confidence 456778888888778999999999999999999999988876 44
No 432
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=20.87 E-value=1.3e+02 Score=25.73 Aligned_cols=39 Identities=10% Similarity=0.101 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhc
Q 039187 6 ASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLM 44 (265)
Q Consensus 6 ~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l 44 (265)
...+.+.|+++.++|..+++.+|.|....-...+++-+.
T Consensus 189 ~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~ 227 (300)
T PHA02530 189 NPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQT 227 (300)
T ss_pred ChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHc
Confidence 346778888988889999999999987665555555443
No 433
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=20.69 E-value=62 Score=27.51 Aligned_cols=41 Identities=5% Similarity=-0.010 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 6 ASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 6 ~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
..++.+.++...++|..||+.+..+.+.+-+..|.++....
T Consensus 188 ~~~~~~~~~~ak~~ga~iI~IT~~~~s~la~~ad~~l~~~~ 228 (278)
T PRK11557 188 RRELNLAADEALRVGAKVLAITGFTPNALQQRASHCLYTIA 228 (278)
T ss_pred CHHHHHHHHHHHHcCCCEEEEcCCCCCchHHhCCEEEEeCC
Confidence 35677777777778999999999999999998887775543
No 434
>PF09664 DUF2399: Protein of unknown function C-terminus (DUF2399); InterPro: IPR024465 This domain is found in archaeal, bacterial and eukaryotic proteins. Its function is unknown.
Probab=20.32 E-value=1.9e+02 Score=22.43 Aligned_cols=36 Identities=31% Similarity=0.434 Sum_probs=29.8
Q ss_pred CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 19 TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 19 ~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
.....|||-=||+.....+.|++ .+.|.++.|+|.-
T Consensus 40 ~~~pLVCt~G~p~~A~~~LL~~L--~~~g~~l~y~GDf 75 (152)
T PF09664_consen 40 SCPPLVCTSGQPSAAARRLLDRL--AAAGARLYYSGDF 75 (152)
T ss_pred CCCeEEEcCCcHHHHHHHHHHHH--HhCCCEEEEecCC
Confidence 57789999999999999999988 5555688888875
No 435
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=20.09 E-value=1.8e+02 Score=26.16 Aligned_cols=40 Identities=18% Similarity=0.167 Sum_probs=31.8
Q ss_pred HHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 11 RTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 11 ~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
+.||.|+++|..++++=.+-+ +++|+-++.+|-.+..||-
T Consensus 192 nIlr~L~~rg~~vtVVP~~t~------~eeIl~~~pDGiflSNGPG 231 (368)
T COG0505 192 NILRELVKRGCRVTVVPADTS------AEEILALNPDGIFLSNGPG 231 (368)
T ss_pred HHHHHHHHCCCeEEEEcCCCC------HHHHHhhCCCEEEEeCCCC
Confidence 578999999998887766655 5677777888888888886
Done!