Query 039187
Match_columns 265
No_of_seqs 140 out of 1702
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 11:52:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039187.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039187hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gfo_A Cobalt import ATP-bindi 98.1 1.3E-06 4.4E-11 74.1 3.3 54 1-56 174-228 (275)
2 1b0u_A Histidine permease; ABC 98.1 2.2E-06 7.6E-11 72.1 4.1 54 1-56 184-237 (262)
3 2olj_A Amino acid ABC transpor 98.1 2.7E-06 9.3E-11 71.6 4.4 54 1-56 190-243 (263)
4 1g6h_A High-affinity branched- 98.1 3E-06 1E-10 71.1 4.5 54 1-56 184-237 (257)
5 1ji0_A ABC transporter; ATP bi 98.0 2.3E-06 8E-11 71.0 3.7 54 1-56 170-223 (240)
6 4g1u_C Hemin import ATP-bindin 98.0 2.7E-06 9.2E-11 71.8 3.6 54 1-56 178-232 (266)
7 3tui_C Methionine import ATP-b 98.0 2.9E-06 9.7E-11 74.6 3.8 54 1-56 194-248 (366)
8 2onk_A Molybdate/tungstate ABC 98.0 3.8E-06 1.3E-10 69.7 3.7 54 1-56 157-211 (240)
9 1vpl_A ABC transporter, ATP-bi 98.0 3.5E-06 1.2E-10 70.7 3.1 59 1-65 177-235 (256)
10 2yz2_A Putative ABC transporte 97.9 5.1E-06 1.7E-10 70.0 3.8 54 1-56 169-222 (266)
11 2qi9_C Vitamin B12 import ATP- 97.9 5.8E-06 2E-10 69.0 3.9 54 1-56 164-217 (249)
12 2zu0_C Probable ATP-dependent 97.8 8.5E-06 2.9E-10 68.7 3.3 58 1-64 195-253 (267)
13 3rlf_A Maltose/maltodextrin im 97.8 1E-05 3.6E-10 71.4 3.9 54 1-56 164-218 (381)
14 3fvq_A Fe(3+) IONS import ATP- 97.8 1.4E-05 4.8E-10 70.1 4.4 54 1-56 169-223 (359)
15 2d2e_A SUFC protein; ABC-ATPas 97.8 1.3E-05 4.5E-10 66.8 3.9 54 1-56 174-228 (250)
16 2nq2_C Hypothetical ABC transp 97.8 1.3E-05 4.5E-10 67.0 3.8 53 1-56 159-212 (253)
17 2it1_A 362AA long hypothetical 97.8 1.3E-05 4.6E-10 70.3 4.0 54 1-56 164-218 (362)
18 2yyz_A Sugar ABC transporter, 97.8 1.4E-05 4.9E-10 70.1 4.0 54 1-56 164-218 (359)
19 1z47_A CYSA, putative ABC-tran 97.8 1.5E-05 5E-10 69.9 3.8 54 1-56 176-230 (355)
20 1g29_1 MALK, maltose transport 97.8 1.6E-05 5.4E-10 70.2 4.0 54 1-56 170-224 (372)
21 1oxx_K GLCV, glucose, ABC tran 97.7 1.3E-05 4.6E-10 70.2 3.3 54 1-56 171-225 (353)
22 1v43_A Sugar-binding transport 97.7 1.7E-05 5.9E-10 69.9 4.0 54 1-56 172-226 (372)
23 3d31_A Sulfate/molybdate ABC t 97.7 1.9E-05 6.4E-10 69.1 4.0 54 1-56 158-212 (348)
24 2ff7_A Alpha-hemolysin translo 97.7 2.2E-05 7.5E-10 65.4 3.7 52 1-56 176-227 (247)
25 2ihy_A ABC transporter, ATP-bi 97.7 8E-06 2.7E-10 69.3 0.9 54 1-56 192-247 (279)
26 2ixe_A Antigen peptide transpo 97.7 2.6E-05 8.8E-10 65.9 3.7 53 1-56 187-240 (271)
27 3nh6_A ATP-binding cassette SU 97.7 3.6E-05 1.2E-09 66.1 4.6 52 1-56 221-272 (306)
28 2ghi_A Transport protein; mult 97.6 3.4E-05 1.2E-09 64.7 3.5 52 1-56 186-237 (260)
29 1mv5_A LMRA, multidrug resista 97.5 1.8E-05 6.2E-10 65.7 0.5 52 1-56 170-221 (243)
30 3ux8_A Excinuclease ABC, A sub 97.5 5.7E-05 2E-09 71.7 4.0 57 1-64 577-639 (670)
31 3b5x_A Lipid A export ATP-bind 97.5 8.1E-05 2.8E-09 69.5 4.9 52 1-56 511-562 (582)
32 3qf4_B Uncharacterized ABC tra 97.5 9.1E-05 3.1E-09 69.5 4.9 52 1-56 522-573 (598)
33 2yl4_A ATP-binding cassette SU 97.5 9.8E-05 3.3E-09 69.2 5.0 52 1-56 514-565 (595)
34 3qf4_A ABC transporter, ATP-bi 97.4 8.3E-05 2.8E-09 69.6 4.0 56 1-64 510-565 (587)
35 3b60_A Lipid A export ATP-bind 97.4 8.5E-05 2.9E-09 69.4 3.8 56 1-64 511-566 (582)
36 2pjz_A Hypothetical protein ST 97.3 7.4E-05 2.5E-09 62.7 2.1 55 1-64 159-214 (263)
37 3pih_A Uvrabc system protein A 97.3 0.00013 4.5E-09 71.2 3.9 53 1-56 839-897 (916)
38 4a82_A Cystic fibrosis transme 97.3 0.00013 4.5E-09 68.1 3.6 56 1-64 508-563 (578)
39 2cbz_A Multidrug resistance-as 97.2 0.00011 3.7E-09 60.8 2.4 52 1-56 158-212 (237)
40 3ux8_A Excinuclease ABC, A sub 97.2 0.00014 4.8E-09 69.1 3.1 53 1-56 235-293 (670)
41 3gd7_A Fusion complex of cysti 97.2 0.00015 5.2E-09 64.3 2.7 52 1-56 186-237 (390)
42 2pze_A Cystic fibrosis transme 97.2 0.00011 3.8E-09 60.3 1.6 52 1-56 161-213 (229)
43 3pih_A Uvrabc system protein A 97.1 0.00024 8.1E-09 69.5 3.8 53 1-56 497-555 (916)
44 2r6f_A Excinuclease ABC subuni 97.1 0.0003 1E-08 68.7 3.7 54 1-56 537-595 (972)
45 3j16_B RLI1P; ribosome recycli 97.0 0.00028 9.7E-09 66.1 3.4 60 1-65 498-559 (608)
46 2bbs_A Cystic fibrosis transme 97.0 0.00025 8.5E-09 60.4 2.0 52 1-56 190-242 (290)
47 1f2t_B RAD50 ABC-ATPase; DNA d 96.9 0.00058 2E-08 52.1 3.5 43 1-45 94-136 (148)
48 2ygr_A Uvrabc system protein A 96.9 0.00047 1.6E-08 67.5 3.6 54 1-56 554-612 (993)
49 2vf7_A UVRA2, excinuclease ABC 96.8 0.00045 1.5E-08 66.9 2.8 54 1-56 764-822 (842)
50 2r6f_A Excinuclease ABC subuni 96.8 0.00066 2.2E-08 66.4 3.7 54 1-56 879-937 (972)
51 2ygr_A Uvrabc system protein A 96.8 0.00081 2.8E-08 65.9 4.3 54 1-56 897-955 (993)
52 2vf7_A UVRA2, excinuclease ABC 96.8 0.00071 2.4E-08 65.6 3.6 54 1-56 412-470 (842)
53 4f4c_A Multidrug resistance pr 96.8 0.00039 1.3E-08 70.8 1.8 57 1-65 1248-1304(1321)
54 3bk7_A ABC transporter ATP-bin 96.7 0.00096 3.3E-08 62.5 4.2 60 1-65 502-563 (607)
55 1yqt_A RNAse L inhibitor; ATP- 96.7 0.00079 2.7E-08 62.2 3.5 60 1-65 432-493 (538)
56 4f4c_A Multidrug resistance pr 96.7 0.0006 2E-08 69.5 2.3 57 1-65 585-641 (1321)
57 4aby_A DNA repair protein RECN 96.6 0.0013 4.5E-08 58.4 3.7 50 1-54 328-381 (415)
58 3g5u_A MCG1178, multidrug resi 96.5 0.0015 5E-08 66.5 3.7 52 1-56 1202-1253(1284)
59 3g5u_A MCG1178, multidrug resi 96.2 0.0017 5.9E-08 66.0 2.5 56 1-64 557-612 (1284)
60 3ozx_A RNAse L inhibitor; ATP 96.1 0.0048 1.6E-07 57.0 4.7 55 1-56 416-472 (538)
61 2iw3_A Elongation factor 3A; a 96.0 0.0045 1.5E-07 60.8 4.2 51 1-56 579-630 (986)
62 3j16_B RLI1P; ribosome recycli 95.6 0.0035 1.2E-07 58.7 1.8 50 1-52 252-301 (608)
63 3bk7_A ABC transporter ATP-bin 95.5 0.0053 1.8E-07 57.5 2.2 45 1-46 259-303 (607)
64 4ad8_A DNA repair protein RECN 95.4 0.0082 2.8E-07 55.1 3.2 43 1-46 430-472 (517)
65 1yqt_A RNAse L inhibitor; ATP- 95.3 0.0077 2.6E-07 55.6 2.8 45 1-46 189-233 (538)
66 3tif_A Uncharacterized ABC tra 95.2 0.011 3.8E-07 48.4 3.2 54 1-56 176-229 (235)
67 1e69_A Chromosome segregation 95.2 0.017 5.9E-07 49.5 4.4 53 1-56 254-308 (322)
68 3ozx_A RNAse L inhibitor; ATP 94.8 0.0088 3E-07 55.2 1.7 49 1-52 169-217 (538)
69 1tf7_A KAIC; homohexamer, hexa 94.4 0.017 5.7E-07 53.1 2.4 46 1-46 156-209 (525)
70 1cr0_A DNA primase/helicase; R 94.1 0.028 9.6E-07 47.3 3.1 45 4-49 170-236 (296)
71 2obl_A ESCN; ATPase, hydrolase 93.5 0.011 3.6E-07 51.6 -0.6 52 1-56 192-250 (347)
72 2dpy_A FLII, flagellum-specifi 93.2 0.013 4.4E-07 52.7 -0.6 52 1-56 279-339 (438)
73 2ehv_A Hypothetical protein PH 93.0 0.03 1E-06 45.5 1.4 42 5-46 157-207 (251)
74 2w0m_A SSO2452; RECA, SSPF, un 92.6 0.051 1.7E-06 43.4 2.3 45 2-46 139-191 (235)
75 2bdt_A BH3686; alpha-beta prot 91.8 0.043 1.5E-06 42.8 0.9 51 1-56 128-179 (189)
76 2pt7_A CAG-ALFA; ATPase, prote 90.4 0.09 3.1E-06 45.3 1.6 40 7-49 252-291 (330)
77 1w1w_A Structural maintenance 90.2 0.16 5.6E-06 45.2 3.1 44 1-46 368-411 (430)
78 3kta_B Chromosome segregation 90.1 0.22 7.5E-06 38.6 3.5 42 1-45 99-140 (173)
79 1tf7_A KAIC; homohexamer, hexa 90.0 0.058 2E-06 49.5 0.0 44 5-49 392-444 (525)
80 3thx_A DNA mismatch repair pro 89.6 0.26 8.7E-06 48.4 4.2 53 1-56 754-808 (934)
81 2npi_A Protein CLP1; CLP1-PCF1 89.5 0.14 4.7E-06 46.3 2.0 36 19-56 287-333 (460)
82 3jvv_A Twitching mobility prot 83.7 0.57 1.9E-05 40.7 2.7 38 7-46 208-245 (356)
83 4a74_A DNA repair and recombin 82.0 0.66 2.3E-05 36.7 2.3 40 7-46 156-199 (231)
84 2cvh_A DNA repair and recombin 81.1 1.3 4.3E-05 34.8 3.7 40 7-46 132-184 (220)
85 3ec2_A DNA replication protein 72.7 4.7 0.00016 30.5 4.7 33 1-33 114-146 (180)
86 2kjq_A DNAA-related protein; s 71.9 3.6 0.00012 30.6 3.8 33 2-34 96-129 (149)
87 2eyu_A Twitching motility prot 70.5 6.3 0.00022 32.3 5.3 28 17-46 120-147 (261)
88 2dr3_A UPF0273 protein PH0284; 69.0 3.4 0.00012 32.8 3.3 42 5-46 147-196 (247)
89 2o8b_B DNA mismatch repair pro 66.4 4 0.00014 40.4 3.7 53 1-56 881-937 (1022)
90 1wb9_A DNA mismatch repair pro 63.3 4.8 0.00016 38.8 3.5 52 2-56 700-753 (800)
91 1n0w_A DNA repair protein RAD5 61.0 3.9 0.00013 32.4 2.1 41 6-46 149-208 (243)
92 1ye8_A Protein THEP1, hypothet 60.7 7.5 0.00026 29.7 3.7 45 1-53 114-160 (178)
93 1s96_A Guanylate kinase, GMP k 58.3 4.9 0.00017 32.0 2.3 49 1-68 115-163 (219)
94 3lda_A DNA repair protein RAD5 55.8 6.3 0.00022 34.6 2.7 40 7-46 304-362 (400)
95 1nlf_A Regulatory protein REPA 53.4 7.2 0.00025 31.9 2.6 27 5-31 155-182 (279)
96 3thx_B DNA mismatch repair pro 51.3 13 0.00043 36.5 4.2 49 1-52 765-816 (918)
97 1pzn_A RAD51, DNA repair and r 51.1 11 0.00038 32.2 3.5 49 6-56 261-310 (349)
98 3b85_A Phosphate starvation-in 50.3 5.6 0.00019 31.4 1.3 25 5-31 135-159 (208)
99 2z4s_A Chromosomal replication 47.3 12 0.00042 33.1 3.2 62 4-68 211-273 (440)
100 2r6a_A DNAB helicase, replicat 44.8 11 0.00039 33.4 2.6 42 5-46 338-398 (454)
101 1m3s_A Hypothetical protein YC 44.3 10 0.00034 28.9 1.9 40 7-46 93-132 (186)
102 1ni3_A YCHF GTPase, YCHF GTP-b 43.0 2.8 9.5E-05 36.8 -1.7 51 2-56 155-208 (392)
103 2xhz_A KDSD, YRBH, arabinose 5 43.0 10 0.00035 28.7 1.8 41 6-46 109-149 (183)
104 1tk9_A Phosphoheptose isomeras 42.3 8.1 0.00028 29.4 1.1 40 7-46 124-163 (188)
105 3sho_A Transcriptional regulat 42.2 10 0.00036 28.8 1.7 41 6-46 100-140 (187)
106 2b8t_A Thymidine kinase; deoxy 41.9 18 0.00062 28.8 3.1 39 8-46 104-151 (223)
107 2xbl_A Phosphoheptose isomeras 41.3 10 0.00036 29.0 1.6 40 7-46 130-169 (198)
108 1tq4_A IIGP1, interferon-induc 40.5 14 0.00049 32.5 2.5 46 1-46 197-253 (413)
109 1x92_A APC5045, phosphoheptose 40.2 16 0.00055 28.1 2.6 41 6-46 126-169 (199)
110 2v9p_A Replication protein E1; 40.0 0.66 2.3E-05 39.4 -6.0 36 27-70 236-271 (305)
111 1vim_A Hypothetical protein AF 38.5 12 0.0004 29.1 1.5 40 7-46 103-142 (200)
112 4dgh_A Sulfate permease family 38.5 70 0.0024 22.4 5.7 67 1-71 30-101 (130)
113 1xx6_A Thymidine kinase; NESG, 37.0 30 0.001 26.8 3.6 38 8-45 96-142 (191)
114 3llo_A Prestin; STAS domain, c 36.0 48 0.0016 23.8 4.5 20 48-71 97-116 (143)
115 1sbo_A Putative anti-sigma fac 35.4 80 0.0028 21.0 5.5 21 47-71 76-96 (110)
116 2j9r_A Thymidine kinase; TK1, 35.3 24 0.00083 28.0 2.9 45 9-55 117-170 (214)
117 3fj1_A Putative phosphosugar i 35.3 16 0.00053 31.2 1.9 41 6-46 104-144 (344)
118 3fxa_A SIS domain protein; str 35.1 9.4 0.00032 29.5 0.4 40 7-46 106-145 (201)
119 3eua_A Putative fructose-amino 35.1 16 0.00054 31.0 1.8 41 6-46 87-127 (329)
120 3etn_A Putative phosphosugar i 34.1 18 0.00063 28.5 2.0 41 6-46 119-161 (220)
121 4dgf_A Sulfate transporter sul 29.6 85 0.0029 22.2 4.9 21 47-71 84-104 (135)
122 2yva_A DNAA initiator-associat 29.3 24 0.00082 26.9 1.9 40 6-45 122-164 (196)
123 1th8_B Anti-sigma F factor ant 29.2 98 0.0034 20.8 5.1 67 1-71 22-95 (116)
124 3fkj_A Putative phosphosugar i 29.1 19 0.00064 30.8 1.3 41 6-46 102-142 (347)
125 3ny7_A YCHM protein, sulfate t 27.9 1E+02 0.0034 21.3 4.9 67 1-71 27-97 (118)
126 1sxj_E Activator 1 40 kDa subu 27.7 46 0.0016 27.8 3.6 60 1-70 146-205 (354)
127 1rj9_A FTSY, signal recognitio 27.2 16 0.00053 30.7 0.5 31 1-31 228-259 (304)
128 3g68_A Putative phosphosugar i 27.0 17 0.00058 31.1 0.7 43 6-49 95-137 (352)
129 1h4x_A SPOIIAA, anti-sigma F f 27.0 1.2E+02 0.0041 20.5 5.2 67 1-71 21-94 (117)
130 3tbf_A Glucosamine--fructose-6 25.8 24 0.00082 30.4 1.4 43 6-49 114-157 (372)
131 1jeo_A MJ1247, hypothetical pr 25.7 17 0.00059 27.3 0.4 39 7-46 96-134 (180)
132 3knz_A Putative sugar binding 25.5 19 0.00064 31.1 0.7 43 6-49 110-152 (366)
133 3pvh_A UPF0603 protein AT1G547 25.4 96 0.0033 22.8 4.6 42 1-42 25-70 (153)
134 3hba_A Putative phosphosugar i 25.1 18 0.00061 30.7 0.5 41 6-46 103-143 (334)
135 3bh0_A DNAB-like replicative h 24.9 42 0.0015 27.9 2.8 24 7-30 207-231 (315)
136 2i3b_A HCR-ntpase, human cance 24.7 53 0.0018 25.2 3.1 44 8-55 123-170 (189)
137 2poc_A D-fructose-6- PH, isome 24.7 32 0.0011 29.4 2.0 41 6-46 110-150 (367)
138 3oiz_A Antisigma-factor antago 24.3 1E+02 0.0034 20.6 4.2 28 1-28 57-84 (99)
139 2i2w_A Phosphoheptose isomeras 24.2 15 0.00051 28.8 -0.2 40 7-46 145-184 (212)
140 3trj_A Phosphoheptose isomeras 24.1 18 0.00062 28.1 0.3 41 6-46 127-170 (201)
141 4hyl_A Stage II sporulation pr 23.7 1.5E+02 0.0051 20.0 5.2 22 2-23 56-77 (117)
142 2zj3_A Glucosamine--fructose-6 23.6 34 0.0012 29.4 2.0 41 6-46 120-160 (375)
143 2ka5_A Putative anti-sigma fac 23.4 1.5E+02 0.005 20.6 5.1 67 1-71 31-104 (125)
144 2ewv_A Twitching motility prot 22.9 46 0.0016 28.6 2.7 33 11-46 226-258 (372)
145 2orv_A Thymidine kinase; TP4A 22.2 38 0.0013 27.3 1.8 38 9-46 105-151 (234)
146 1moq_A Glucosamine 6-phosphate 21.7 37 0.0013 29.0 1.8 43 6-49 112-155 (368)
147 1nri_A Hypothetical protein HI 21.6 21 0.00073 29.8 0.2 41 6-46 153-193 (306)
No 1
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.11 E-value=1.3e-06 Score=74.09 Aligned_cols=54 Identities=22% Similarity=0.308 Sum_probs=50.0
Q ss_pred CchHHHHHHHHHHHHHh-hCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTV-DTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~-~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++.++++.|++++ +.|.|||+++|++. .+.+.+|++++|.+ |+++..|++
T Consensus 174 LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~-G~i~~~g~~ 228 (275)
T 3gfo_A 174 LDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKE-GRVILQGNP 228 (275)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEET-TEEEEEECH
T ss_pred CCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 79999999999999998 56999999999997 56678999999998 999999998
No 2
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.07 E-value=2.2e-06 Score=72.11 Aligned_cols=54 Identities=19% Similarity=0.223 Sum_probs=49.9
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++.++++.|++++++|.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 184 LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 237 (262)
T 1b0u_A 184 LDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQ-GKIEEEGDP 237 (262)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 7999999999999999888999999999975 56788999999998 999999987
No 3
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.06 E-value=2.7e-06 Score=71.61 Aligned_cols=54 Identities=22% Similarity=0.233 Sum_probs=49.8
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++.++++.|++++++|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 190 LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 243 (263)
T 2olj_A 190 LDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDG-GYIIEEGKP 243 (263)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 7999999999999999878999999999975 56778999999998 999999987
No 4
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.05 E-value=3e-06 Score=71.08 Aligned_cols=54 Identities=20% Similarity=0.185 Sum_probs=50.1
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++.++++.|++++++|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 184 LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 237 (257)
T 1g6h_A 184 VAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFN-GQIIAEGRG 237 (257)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEEET-TEEEEEEES
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEEeCH
Confidence 7999999999999999888999999999986 56678999999998 999999998
No 5
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.05 E-value=2.3e-06 Score=70.99 Aligned_cols=54 Identities=13% Similarity=0.156 Sum_probs=49.8
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++.++++.|+++++.|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 170 LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 223 (240)
T 1ji0_A 170 LAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVLEGKA 223 (240)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEEH
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 7999999999999999878999999999974 56788999999998 999999987
No 6
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.02 E-value=2.7e-06 Score=71.75 Aligned_cols=54 Identities=20% Similarity=0.258 Sum_probs=49.4
Q ss_pred CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++.++++.|++++++ |.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 178 LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~-G~i~~~g~~ 232 (266)
T 4g1u_C 178 LDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQ-GKLVACGTP 232 (266)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 7999999999999999875 679999999985 67788999999998 999999998
No 7
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.02 E-value=2.9e-06 Score=74.60 Aligned_cols=54 Identities=13% Similarity=0.194 Sum_probs=50.2
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++.++++.|+++.+ .|.|||+++|++. .+.+.+|++++|.+ |+++..|++
T Consensus 194 LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~-G~iv~~g~~ 248 (366)
T 3tui_C 194 LDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELIEQDTV 248 (366)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEECCBH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 799999999999999986 5999999999985 67788999999998 999999998
No 8
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.98 E-value=3.8e-06 Score=69.74 Aligned_cols=54 Identities=17% Similarity=0.201 Sum_probs=49.4
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++.++++.|+++++ .|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 157 LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 211 (240)
T 2onk_A 157 VDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 799999999999999986 5999999999975 56788999999998 999999987
No 9
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.95 E-value=3.5e-06 Score=70.65 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=52.0
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR 65 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~ 65 (265)
||+.++.++++.|+++++.|+|||+++|++. ++.+.+|++++|.+ |+++..|++ +++.+
T Consensus 177 LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~----~~~~~ 235 (256)
T 1vpl_A 177 LDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGTV----EELKE 235 (256)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEEH----HHHHH
T ss_pred cCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEEC-CEEEEecCH----HHHHH
Confidence 7999999999999999878999999999984 56677999999998 999999988 55543
No 10
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.93 E-value=5.1e-06 Score=70.03 Aligned_cols=54 Identities=19% Similarity=0.375 Sum_probs=49.4
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++.++++.|++++++|+|||+++|++. .+.+.+|++++|.+ |+++..|++
T Consensus 169 LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 222 (266)
T 2yz2_A 169 LDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGTR 222 (266)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEET-TEEEEEEEH
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 7999999999999999877999999999986 45677999999998 999999987
No 11
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.92 E-value=5.8e-06 Score=69.02 Aligned_cols=54 Identities=17% Similarity=0.228 Sum_probs=49.5
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++..+.+.|++++++|+|||+++|++. .+.+.+|++++|.+ |+++..|++
T Consensus 164 LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 217 (249)
T 2qi9_C 164 LDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRR 217 (249)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEEH
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 7999999999999999877999999999975 56688999999998 999999987
No 12
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.82 E-value=8.5e-06 Score=68.70 Aligned_cols=58 Identities=19% Similarity=0.161 Sum_probs=50.4
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHh-hhhhhhccCCCeEEEecCCCCCcchHH
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEA-FDELFLMKQGRQEIYVGLLGRHSCHLT 64 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~-fd~~~~l~~gg~~~y~G~~~~~~~~~~ 64 (265)
||+.++.++++.|++++++|+|||+++|++. .+... +|++++|.+ |+++..|++ +++.
T Consensus 195 LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~~l~~-G~i~~~g~~----~~~~ 253 (267)
T 2zu0_C 195 LDIDALKVVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ-GRIVKSGDF----TLVK 253 (267)
T ss_dssp CCHHHHHHHHHHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEEEEET-TEEEEEECT----THHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEEEEEC-CEEEEEcCH----HHHh
Confidence 7999999999999999877999999999985 34444 899999998 999999998 6554
No 13
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.82 E-value=1e-05 Score=71.42 Aligned_cols=54 Identities=20% Similarity=0.254 Sum_probs=50.5
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+..+.++.+.|+++.+ .|.|+|+++|++. ++..++|+|++|.+ |+++..|++
T Consensus 164 LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~~ 218 (381)
T 3rlf_A 164 LDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKP 218 (381)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEEeCH
Confidence 799999999999999987 4999999999985 78899999999998 999999998
No 14
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.80 E-value=1.4e-05 Score=70.09 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=49.5
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+..+.++.+.|+++.+ .|.|+|+++|+.. ++..++|+|++|++ |+++..|++
T Consensus 169 LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~~ 223 (359)
T 3fvq_A 169 LDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQ-GRILQTASP 223 (359)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEEEEeCH
Confidence 799999999998888765 7999999999985 78899999999998 999999998
No 15
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.79 E-value=1.3e-05 Score=66.83 Aligned_cols=54 Identities=19% Similarity=0.139 Sum_probs=48.2
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHh-hhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEA-FDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~-fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++.++++.|+++++.|+|||+++|++. .+... +|++++|.+ |+++..|++
T Consensus 174 LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~-G~i~~~g~~ 228 (250)
T 2d2e_A 174 LDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMD-GRVVATGGP 228 (250)
T ss_dssp TCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEET-TEEEEEESH
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEEC-CEEEEEeCH
Confidence 7999999999999999778999999999986 44455 599999998 999999987
No 16
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.78 E-value=1.3e-05 Score=67.01 Aligned_cols=53 Identities=25% Similarity=0.400 Sum_probs=48.1
Q ss_pred CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++.++++.|++++++ |+|||+++|++. ++.+.+|++++|.+ |+ ++.|++
T Consensus 159 LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~-~~~g~~ 212 (253)
T 2nq2_C 159 LDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNK-QN-FKFGET 212 (253)
T ss_dssp SCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEET-TE-EEEEEH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-Ce-EecCCH
Confidence 7999999999999999876 999999999985 56688999999998 88 888987
No 17
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.78 E-value=1.3e-05 Score=70.34 Aligned_cols=54 Identities=22% Similarity=0.262 Sum_probs=50.0
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++.++.+.|+++.+ .|.|+|+++|++. ++..++|++++|.+ |+++..|++
T Consensus 164 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 218 (362)
T 2it1_A 164 LDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIRE-GEILQVGTP 218 (362)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 799999999999999987 4999999999975 77899999999998 999999998
No 18
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.77 E-value=1.4e-05 Score=70.12 Aligned_cols=54 Identities=20% Similarity=0.254 Sum_probs=50.0
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++.++.+.|+++.+ .|.|+|+++|++. ++..++|++++|++ |+++..|++
T Consensus 164 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 218 (359)
T 2yyz_A 164 LDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQ-GKLVQYGTP 218 (359)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 799999999999999987 4999999999975 67889999999998 999999998
No 19
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.76 E-value=1.5e-05 Score=69.92 Aligned_cols=54 Identities=22% Similarity=0.290 Sum_probs=50.0
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++.++.+.|+++.+ .|.|+|+++|++. ++..++|++++|.+ |+++..|++
T Consensus 176 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 230 (355)
T 1z47_A 176 IDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHE-GNVEQFGTP 230 (355)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 799999999999999987 4999999999975 67889999999998 999999998
No 20
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.75 E-value=1.6e-05 Score=70.20 Aligned_cols=54 Identities=20% Similarity=0.199 Sum_probs=50.1
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++.++.+.|+++.+ .|.|+|+++|++. ++..++|++++|.+ |+++..|++
T Consensus 170 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 224 (372)
T 1g29_1 170 LDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GVLQQVGSP 224 (372)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeC-CEEEEeCCH
Confidence 799999999999999987 4999999999975 78889999999998 999999998
No 21
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.74 E-value=1.3e-05 Score=70.17 Aligned_cols=54 Identities=26% Similarity=0.369 Sum_probs=49.9
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++.++.+.|+++.+ .|.|+|+++|++. ++..++|++++|.+ |+++..|++
T Consensus 171 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 225 (353)
T 1oxx_K 171 LDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKLVQVGKP 225 (353)
T ss_dssp SCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 799999999999999976 5999999999975 67889999999998 999999998
No 22
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.74 E-value=1.7e-05 Score=69.90 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=50.0
Q ss_pred CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++.++.+.|+++.++ |.|+|+++|++. ++..++|++++|.+ |+++..|++
T Consensus 172 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 226 (372)
T 1v43_A 172 LDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGSP 226 (372)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 7999999999999999874 999999999975 67889999999998 999999998
No 23
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.72 E-value=1.9e-05 Score=69.08 Aligned_cols=54 Identities=20% Similarity=0.151 Sum_probs=50.0
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+..++.+.|+++.+ .|.|+|+++|++. ++..++|++++|.+ |+++..|++
T Consensus 158 LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 212 (348)
T 3d31_A 158 LDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (348)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 799999999999999976 5999999999974 67899999999998 999999998
No 24
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.69 E-value=2.2e-05 Score=65.39 Aligned_cols=52 Identities=23% Similarity=0.434 Sum_probs=46.9
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++.++++.|+++. .|+|||+++|++.. + +.+|++++|.+ |+++..|++
T Consensus 176 LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~l~~-G~i~~~g~~ 227 (247)
T 2ff7_A 176 LDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADRIIVMEK-GKIVEQGKH 227 (247)
T ss_dssp CCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEEEET-TEEEEEECH
T ss_pred CCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEEC-CEEEEECCH
Confidence 79999999999999995 59999999999863 3 45999999998 999999987
No 25
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.68 E-value=8e-06 Score=69.33 Aligned_cols=54 Identities=26% Similarity=0.348 Sum_probs=49.4
Q ss_pred CchHHHHHHHHHHHHHhhCCCeE--EEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTV--VCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tv--i~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++.++++.|++++++|+|| |+++|++. ++.+.+|++++|.+ |++++.|++
T Consensus 192 LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 247 (279)
T 2ihy_A 192 LDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKD-GQSIQQGAV 247 (279)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEET-TEEEEEEEH
T ss_pred cCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 79999999999999998779999 99999986 56678999999998 999999987
No 26
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.65 E-value=2.6e-05 Score=65.87 Aligned_cols=53 Identities=25% Similarity=0.226 Sum_probs=47.4
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++.++++.|+++++ .|+|||+++|++. .+ ..+|++++|.+ |+++..|++
T Consensus 187 LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~-~~-~~~d~v~~l~~-G~i~~~g~~ 240 (271)
T 2ixe_A 187 LDAGNQLRVQRLLYESPEWASRTVLLITQQLS-LA-ERAHHILFLKE-GSVCEQGTH 240 (271)
T ss_dssp CCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH-HH-TTCSEEEEEET-TEEEEEECH
T ss_pred CCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HH-HhCCEEEEEEC-CEEEEECCH
Confidence 799999999999999976 5999999999975 33 45999999998 999999987
No 27
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.65 E-value=3.6e-05 Score=66.09 Aligned_cols=52 Identities=17% Similarity=0.266 Sum_probs=46.8
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+..++.+.|+++.+ ++|+|+++|+++. + ..+|+|++|.+ |+++..|++
T Consensus 221 LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~-~-~~aD~i~vl~~-G~iv~~G~~ 272 (306)
T 3nh6_A 221 LDTSNERAIQASLAKVCA-NRTTIVVAHRLST-V-VNADQILVIKD-GCIVERGRH 272 (306)
T ss_dssp CCHHHHHHHHHHHHHHHT-TSEEEEECCSHHH-H-HTCSEEEEEET-TEEEEEECH
T ss_pred CCHHHHHHHHHHHHHHcC-CCEEEEEEcChHH-H-HcCCEEEEEEC-CEEEEECCH
Confidence 799999999999999865 7999999999864 3 45999999998 999999998
No 28
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.59 E-value=3.4e-05 Score=64.72 Aligned_cols=52 Identities=19% Similarity=0.349 Sum_probs=46.9
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+...+++.|+++.+ |+|||+++|++.. + +.+|++++|.+ |+++..|++
T Consensus 186 LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~~-G~i~~~g~~ 237 (260)
T 2ghi_A 186 LDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLNK-GKIVEKGTH 237 (260)
T ss_dssp TCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEET-TEEEEEECH
T ss_pred CCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEEC-CEEEEECCH
Confidence 799999999999999965 8999999999863 3 46999999998 999999987
No 29
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.49 E-value=1.8e-05 Score=65.71 Aligned_cols=52 Identities=25% Similarity=0.396 Sum_probs=46.2
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++.++++.|++++ +|+|||+++|++. .+ ..+|++++|.+ |+++..|++
T Consensus 170 LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~-G~i~~~g~~ 221 (243)
T 1mv5_A 170 LDSESESMVQKALDSLM-KGRTTLVIAHRLS-TI-VDADKIYFIEK-GQITGSGKH 221 (243)
T ss_dssp SCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-HH-HHCSEEEEEET-TEECCCSCH
T ss_pred CCHHHHHHHHHHHHHhc-CCCEEEEEeCChH-HH-HhCCEEEEEEC-CEEEEeCCH
Confidence 78999999999999997 6999999999975 33 56999999998 999998887
No 30
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.49 E-value=5.7e-05 Score=71.75 Aligned_cols=57 Identities=19% Similarity=0.281 Sum_probs=50.8
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhc------cCCCeEEEecCCCCCcchHH
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLM------KQGRQEIYVGLLGRHSCHLT 64 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l------~~gg~~~y~G~~~~~~~~~~ 64 (265)
||+.++.++++.|+++++.|.|||+++|++. ....+|++++| .+ |+++..|++ +++.
T Consensus 577 LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~--~~~~~d~i~~l~~~~g~~~-G~i~~~g~~----~~~~ 639 (670)
T 3ux8_A 577 LHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRG-GQIVAVGTP----EEVA 639 (670)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGC-CEEEEEECH----HHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH--HHHhCCEEEEecCCcCCCC-CEEEEecCH----HHHH
Confidence 7999999999999999888999999999985 34679999999 66 999999998 6653
No 31
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.48 E-value=8.1e-05 Score=69.54 Aligned_cols=52 Identities=21% Similarity=0.309 Sum_probs=47.2
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+..++.+.|+++.+ |+|+|+++|+++. .+.+|++++|++ |+++..|++
T Consensus 511 LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~~d~i~~l~~-G~i~~~g~~ 562 (582)
T 3b5x_A 511 LDTESERAIQAALDELQK-NKTVLVIAHRLST--IEQADEILVVDE-GEIIERGRH 562 (582)
T ss_pred CCHHHHHHHHHHHHHHcC-CCEEEEEecCHHH--HHhCCEEEEEEC-CEEEEECCH
Confidence 799999999999999975 9999999999863 457999999998 999999998
No 32
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.46 E-value=9.1e-05 Score=69.46 Aligned_cols=52 Identities=13% Similarity=0.302 Sum_probs=47.5
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+..++.+.|+++. +|+|+|+++|+++. + +.+|+|++|++ |+++..|++
T Consensus 522 LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~-G~i~~~g~~ 573 (598)
T 3qf4_B 522 VDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNADLIIVLRD-GEIVEMGKH 573 (598)
T ss_dssp CCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCSEEEEECS-SSEEECSCH
T ss_pred CCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEEC-CEEEEECCH
Confidence 79999999999999996 59999999999984 3 55999999998 999999998
No 33
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.45 E-value=9.8e-05 Score=69.18 Aligned_cols=52 Identities=25% Similarity=0.315 Sum_probs=47.4
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+..++.+.|+++.+ |+|+|+++|+++. .+.+|++++|++ |+++..|++
T Consensus 514 LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~~d~i~~l~~-G~i~~~g~~ 565 (595)
T 2yl4_A 514 LDAENEYLVQEALDRLMD-GRTVLVIAHRLST--IKNANMVAVLDQ-GKITEYGKH 565 (595)
T ss_dssp CCHHHHHHHHHHHHHHHT-TSEEEEECCCHHH--HHHSSEEEEEET-TEEEEEECS
T ss_pred CCHHHHHHHHHHHHHHhc-CCEEEEEecCHHH--HHcCCEEEEEEC-CEEEEECCH
Confidence 799999999999999977 8999999999853 356999999998 999999998
No 34
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.41 E-value=8.3e-05 Score=69.56 Aligned_cols=56 Identities=11% Similarity=0.129 Sum_probs=49.5
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHH
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLT 64 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~ 64 (265)
||+.+..++.+.|+++. +|+|+|+++|+++. ...+|+|++|++ |+++..|++ +++.
T Consensus 510 LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~--~~~~d~i~vl~~-G~i~~~g~~----~el~ 565 (587)
T 3qf4_A 510 VDPITEKRILDGLKRYT-KGCTTFIITQKIPT--ALLADKILVLHE-GKVAGFGTH----KELL 565 (587)
T ss_dssp SCHHHHHHHHHHHHHHS-TTCEEEEEESCHHH--HTTSSEEEEEET-TEEEEEECH----HHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCEEEEEecChHH--HHhCCEEEEEEC-CEEEEECCH----HHHH
Confidence 79999999999999985 59999999999864 458999999998 999999998 5554
No 35
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.39 E-value=8.5e-05 Score=69.43 Aligned_cols=56 Identities=20% Similarity=0.258 Sum_probs=49.6
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHH
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLT 64 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~ 64 (265)
||+.+..++.+.|+++.+ |+|+|+++|+++. .+.+|++++|++ |+++..|++ +++.
T Consensus 511 LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~~d~i~~l~~-G~i~~~g~~----~~l~ 566 (582)
T 3b60_A 511 LDTESERAIQAALDELQK-NRTSLVIAHRLST--IEQADEIVVVED-GIIVERGTH----SELL 566 (582)
T ss_dssp CCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG--TTTCSEEEEEET-TEEEEEECH----HHHH
T ss_pred CCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH--HHhCCEEEEEEC-CEEEEecCH----HHHH
Confidence 799999999999999975 9999999999864 357999999998 999999998 5554
No 36
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.31 E-value=7.4e-05 Score=62.75 Aligned_cols=55 Identities=9% Similarity=0.054 Sum_probs=48.2
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhh-hhhhccCCCeEEEecCCCCCcchHH
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFD-ELFLMKQGRQEIYVGLLGRHSCHLT 64 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd-~~~~l~~gg~~~y~G~~~~~~~~~~ 64 (265)
||+.++.++++.|+++++ |||+++|++. ++.+.+| ++++|.+ |+++..|++ +++.
T Consensus 159 LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~-G~i~~~g~~----~~l~ 214 (263)
T 2pjz_A 159 VDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVG-NRLQGPISV----SELL 214 (263)
T ss_dssp CCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEET-TEEEEEEEH----HHHH
T ss_pred cCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEEC-CEEEEecCH----HHHH
Confidence 799999999999999865 9999999985 5567899 9999998 999999998 5554
No 37
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.29 E-value=0.00013 Score=71.23 Aligned_cols=53 Identities=19% Similarity=0.308 Sum_probs=48.5
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhc------cCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLM------KQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l------~~gg~~~y~G~~ 56 (265)
||+.+..++++.|+++++.|.|||++.|++. ....+|+|++| . ||+++..|++
T Consensus 839 LD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~-~G~Iv~~Gtp 897 (916)
T 3pih_A 839 LHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPEGGKE-GGYIVATGTP 897 (916)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGG-CCEEEEEESH
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEecCCCCCC-CCEEEEEcCH
Confidence 7999999999999999989999999999984 45679999999 6 4999999999
No 38
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.28 E-value=0.00013 Score=68.08 Aligned_cols=56 Identities=21% Similarity=0.283 Sum_probs=49.1
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHH
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLT 64 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~ 64 (265)
||+.+..++.+.|+++. +|+|+|+++|+++. + +.+|++++|++ |+++..|++ +++.
T Consensus 508 LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~-G~i~~~g~~----~el~ 563 (578)
T 4a82_A 508 LDLESESIIQEALDVLS-KDRTTLIVAHRLST-I-THADKIVVIEN-GHIVETGTH----RELI 563 (578)
T ss_dssp CCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG-T-TTCSEEEEEET-TEEEEEECH----HHHH
T ss_pred CCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEEC-CEEEEECCH----HHHH
Confidence 79999999999999985 47999999999974 3 56999999998 999999998 5554
No 39
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.24 E-value=0.00011 Score=60.76 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=45.0
Q ss_pred CchHHHHHHHHHHH---HHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVR---NTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~---~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++..+++.|+ ++. +|+|||+++|++.. + +.+|++++|.+ |+++..|++
T Consensus 158 LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~-G~i~~~g~~ 212 (237)
T 2cbz_A 158 VDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSG-GKISEMGSY 212 (237)
T ss_dssp SCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEET-TEEEEEECH
T ss_pred cCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeC-CEEEEeCCH
Confidence 79999999999995 443 58999999999874 3 56999999998 999999987
No 40
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.21 E-value=0.00014 Score=69.10 Aligned_cols=53 Identities=23% Similarity=0.285 Sum_probs=48.2
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhc------cCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLM------KQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l------~~gg~~~y~G~~ 56 (265)
||+.++.++++.|+++.+.|.|||+++|++. ....+|++++| .+ |++++.|++
T Consensus 235 LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~--~~~~~d~ii~l~~g~~~~~-G~i~~~g~~ 293 (670)
T 3ux8_A 235 LHQRDNDRLIATLKSMRDLGNTLIVVEHDED--TMLAADYLIDIGPGAGIHG-GEVVAAGTP 293 (670)
T ss_dssp CCGGGHHHHHHHHHHHHHTTCEEEEECCCHH--HHHHCSEEEEECSSSGGGC-CSEEEEECH
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEecccccccC-CEEEEecCH
Confidence 7999999999999999888999999999985 45679999999 65 999999998
No 41
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.17 E-value=0.00015 Score=64.27 Aligned_cols=52 Identities=15% Similarity=0.225 Sum_probs=46.2
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+..++.+.|+++. .+.|+|+++|++. ....+|+|++|++ |+++..|++
T Consensus 186 LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~-G~i~~~g~~ 237 (390)
T 3gd7_A 186 LDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEE-NKVRQYDSI 237 (390)
T ss_dssp SCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEET-TEEEEESSH
T ss_pred CCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEEC-CEEEEECCH
Confidence 79999999999999864 5899999999974 4567999999998 999999998
No 42
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.16 E-value=0.00011 Score=60.31 Aligned_cols=52 Identities=12% Similarity=0.306 Sum_probs=44.1
Q ss_pred CchHHHHHHHHH-HHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRT-VRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~-l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++.++++. ++++. .|+|||+++|++. .+ ..+|++++|.+ |+++..|++
T Consensus 161 LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~-G~i~~~g~~ 213 (229)
T 2pze_A 161 LDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHE-GSSYFYGTF 213 (229)
T ss_dssp SCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHCSEEEEEET-TEEEEEECH
T ss_pred CCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH-HH-HhCCEEEEEEC-CEEEEECCH
Confidence 799999999997 46664 4899999999975 33 56999999998 999999987
No 43
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.13 E-value=0.00024 Score=69.47 Aligned_cols=53 Identities=25% Similarity=0.480 Sum_probs=48.3
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhc------cCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLM------KQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l------~~gg~~~y~G~~ 56 (265)
||+....++++.|+++.+.|.|||+++|++ +....+|+|++| . ||++++.|++
T Consensus 497 LD~~~~~~l~~~L~~L~~~G~TvivVtHd~--~~~~~aD~ii~lgpgag~~-~G~iv~~G~~ 555 (916)
T 3pih_A 497 LHPRDTERLIKTLKKLRDLGNTVIVVEHDE--EVIRNADHIIDIGPGGGTN-GGRVVFQGTV 555 (916)
T ss_dssp CCGGGHHHHHHHHHHTTTTTCEEEEECCCH--HHHHTCSEEEEEESSSGGG-CSEEEEEECH
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCH--HHHHhCCEEEEEcCCcccC-CCEEEEeech
Confidence 799999999999999998899999999997 455679999999 6 4999999998
No 44
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.05 E-value=0.0003 Score=68.69 Aligned_cols=54 Identities=24% Similarity=0.337 Sum_probs=48.7
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhcc-----CCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMK-----QGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~-----~gg~~~y~G~~ 56 (265)
||+....++++.|++|.+.|.|||++.|++ +..+.+|+|++|. +||++++.|++
T Consensus 537 Ldp~~~~~L~~~L~~Lr~~G~TVIvVeHdl--~~i~~ADrIi~LgpgaG~~gG~iv~~G~~ 595 (972)
T 2r6f_A 537 LHQRDNDRLIATLKSMRDLGNTLIVVEHDE--DTMLAADYLIDIGPGAGIHGGEVVAAGTP 595 (972)
T ss_dssp CCGGGHHHHHHHHHHHHTTTCEEEEECCCH--HHHHSCSEEEEECSSSGGGCCSEEEEECT
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCH--HHHHhCCEEEEeCCCccCCCCEEEEecCH
Confidence 799999999999999988999999999997 4467899999993 36999999998
No 45
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.05 E-value=0.00028 Score=66.09 Aligned_cols=60 Identities=13% Similarity=0.061 Sum_probs=52.2
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCC-CeEEEecCCCCCcchHHH
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQG-RQEIYVGLLGRHSCHLTR 65 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~g-g~~~y~G~~~~~~~~~~~ 65 (265)
||+.+..++++.|+++++ .|.|||+++|+.. ++..++|++++|..+ |+++..|+| +++..
T Consensus 498 LD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p----~~~~~ 559 (608)
T 3j16_B 498 LDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAP----ESLLT 559 (608)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCC----EEHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCCh----HHHhh
Confidence 799999999999999975 6999999999985 678889999999842 789999999 66654
No 46
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.96 E-value=0.00025 Score=60.40 Aligned_cols=52 Identities=10% Similarity=0.284 Sum_probs=44.1
Q ss_pred CchHHHHHHHHHH-HHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTV-RNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l-~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++.++++.+ +++. .|+|||+++|++. .+ ..+|++++|.+ |+++..|++
T Consensus 190 LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~-~~-~~~d~i~~l~~-G~i~~~g~~ 242 (290)
T 2bbs_A 190 LDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHE-GSSYFYGTF 242 (290)
T ss_dssp CCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHSSEEEEEET-TEEEEEECH
T ss_pred CCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH-HH-HcCCEEEEEEC-CeEEEeCCH
Confidence 7999999999964 5664 4899999999974 33 56999999998 999999998
No 47
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=96.91 E-value=0.00058 Score=52.13 Aligned_cols=43 Identities=19% Similarity=0.248 Sum_probs=39.0
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhcc
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMK 45 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~ 45 (265)
||+.+...+.+.|+++.+.|+|||+++|++ ++.+.+|++++|.
T Consensus 94 LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d~ii~l~ 136 (148)
T 1f2t_B 94 LDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHVIRIS 136 (148)
T ss_dssp TCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCCEEEEEE
Confidence 799999999999999987899999999997 4668899999994
No 48
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.90 E-value=0.00047 Score=67.54 Aligned_cols=54 Identities=22% Similarity=0.301 Sum_probs=48.9
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhcc-----CCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMK-----QGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~-----~gg~~~y~G~~ 56 (265)
||+....++.+.|++|.+.|.|||++.|++ +.++.+|+|++|. +||++++.|++
T Consensus 554 Ldp~~~~~L~~~L~~Lr~~G~TVIvVeHdl--~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~ 612 (993)
T 2ygr_A 554 LHQRDNRRLIETLTRLRDLGNTLIVVEHDE--DTIEHADWIVDIGPGAGEHGGRIVHSGPY 612 (993)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEECCCH--HHHHTCSEEEEECSSSGGGCCSCCEEECH
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEECCCH--HHHHhCCEEEEecCccccCCCEEEEeeCH
Confidence 799999999999999988999999999997 4467899999994 36999999998
No 49
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.83 E-value=0.00045 Score=66.93 Aligned_cols=54 Identities=22% Similarity=0.269 Sum_probs=48.2
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhcc-----CCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMK-----QGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~-----~gg~~~y~G~~ 56 (265)
||..+..++.+.|+++++.|.|||+++|++. .+ ..+|++++|. ++|+++..|++
T Consensus 764 LD~~~~~~l~~lL~~L~~~G~tVIvisHdl~-~i-~~aDrii~L~p~~g~~~G~Iv~~g~~ 822 (842)
T 2vf7_A 764 LHPADVERLQRQLVKLVDAGNTVIAVEHKMQ-VV-AASDWVLDIGPGAGEDGGRLVAQGTP 822 (842)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEECSSSGGGCCSEEEEECH
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCCEEEEECCCCCCCCCEEEEEcCH
Confidence 7999999999999999989999999999974 44 7899999993 24999999998
No 50
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.81 E-value=0.00066 Score=66.35 Aligned_cols=54 Identities=22% Similarity=0.330 Sum_probs=48.2
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhcc-----CCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMK-----QGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~-----~gg~~~y~G~~ 56 (265)
||..+..++++.|+++++.|.|||+++|++. ....+|++++|. ++|+++..|++
T Consensus 879 LD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gG~~~G~Iv~~g~~ 937 (972)
T 2r6f_A 879 LHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTP 937 (972)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSTTSCCSEEEEESH
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEEcCCCCCCCCEEEEecCH
Confidence 7999999999999999989999999999975 346899999993 24999999998
No 51
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.80 E-value=0.00081 Score=65.91 Aligned_cols=54 Identities=19% Similarity=0.259 Sum_probs=48.2
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhcc-----CCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMK-----QGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~-----~gg~~~y~G~~ 56 (265)
||..+..++++.|+++++.|.|||+++|++. ....+|++++|. ++|++++.|++
T Consensus 897 LD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gg~~~G~Iv~~G~~ 955 (993)
T 2ygr_A 897 LHFDDIRKLLNVINGLVDKGNTVIVIEHNLD--VIKTSDWIIDLGPEGGAGGGTVVAQGTP 955 (993)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSTTSCSEEEEEECH
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEECCCcCCCCCEEEEecCH
Confidence 7999999999999999989999999999975 347899999993 34999999998
No 52
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.77 E-value=0.00071 Score=65.58 Aligned_cols=54 Identities=17% Similarity=0.283 Sum_probs=48.9
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhcc-----CCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMK-----QGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~-----~gg~~~y~G~~ 56 (265)
||+.....+.+.|++|.+.|.|||++.|++ ++.+.+|+|++|. +||++++.|++
T Consensus 412 Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl--~~l~~aD~ii~lgpgaG~~~G~iv~~g~~ 470 (842)
T 2vf7_A 412 LHPADTEALLSALENLKRGGNSLFVVEHDL--DVIRRADWLVDVGPEAGEKGGEILYSGPP 470 (842)
T ss_dssp CCGGGHHHHHHHHHHHHTTTCEEEEECCCH--HHHTTCSEEEEECSSSGGGCCSEEEEECG
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEcCCH--HHHHhCCEEEEeCCCcccCCCEEEEecCH
Confidence 799999999999999988999999999998 4667899999993 35999999998
No 53
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.75 E-value=0.00039 Score=70.85 Aligned_cols=57 Identities=19% Similarity=0.253 Sum_probs=50.1
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR 65 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~ 65 (265)
||+.|...+.+.|+++. +|+|+|++.|.++. ...+|+|++|++ |+++..|++ +++.+
T Consensus 1248 LD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld~-G~IvE~Gth----~eLl~ 1304 (1321)
T 4f4c_A 1248 LDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVSN-GTIIEKGTH----TQLMS 1304 (1321)
T ss_dssp TTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEESS-SSEEEEECH----HHHHH
T ss_pred CCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEEEC-CEEEEECCH----HHHHh
Confidence 79999999999998865 49999999999974 466999999998 999999999 77664
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.74 E-value=0.00096 Score=62.55 Aligned_cols=60 Identities=17% Similarity=0.125 Sum_probs=51.4
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccC-CCeEEEecCCCCCcchHHH
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQ-GRQEIYVGLLGRHSCHLTR 65 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~-gg~~~y~G~~~~~~~~~~~ 65 (265)
||..++.++++.|+++++ .|.|||+++|++. .+...+|++++|.. .|+....|++ +++..
T Consensus 502 LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p----~~~~~ 563 (607)
T 3bk7_A 502 LDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPP----MGMRE 563 (607)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCC----EEHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCCH----HHHHh
Confidence 799999999999999985 6999999999975 67788999999982 1778888999 66654
No 55
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.72 E-value=0.00079 Score=62.25 Aligned_cols=60 Identities=17% Similarity=0.111 Sum_probs=51.6
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccC-CCeEEEecCCCCCcchHHH
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQ-GRQEIYVGLLGRHSCHLTR 65 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~-gg~~~y~G~~~~~~~~~~~ 65 (265)
||..+..++.+.|+++++ .|.|||+++|++. ++...+|++++|.. .|+++..|++ +++..
T Consensus 432 LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~----~~~~~ 493 (538)
T 1yqt_A 432 LDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPP----MGMRE 493 (538)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCC----EEHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCCH----HHHHh
Confidence 799999999999999985 6999999999975 67788999999984 1688889999 66654
No 56
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.66 E-value=0.0006 Score=69.53 Aligned_cols=57 Identities=28% Similarity=0.322 Sum_probs=50.4
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR 65 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~ 65 (265)
||+.+...+.+.|+++.+ |+|+|+++|+++ ..+.+|+|++|.+ |+++..|+. +++.+
T Consensus 585 LD~~te~~i~~~l~~~~~-~~T~iiiaHrls--~i~~aD~Iivl~~-G~ive~Gth----~eL~~ 641 (1321)
T 4f4c_A 585 LDAESEGIVQQALDKAAK-GRTTIIIAHRLS--TIRNADLIISCKN-GQVVEVGDH----RALMA 641 (1321)
T ss_dssp SCTTTHHHHHHHHHHHHT-TSEEEEECSCTT--TTTTCSEEEEEET-TEEEEEECH----HHHHT
T ss_pred CCHHHHHHHHHHHHHHhC-CCEEEEEcccHH--HHHhCCEEEEeeC-CeeeccCCH----HHHHH
Confidence 799999999999998864 999999999997 4578999999998 999999998 66653
No 57
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.56 E-value=0.0013 Score=58.41 Aligned_cols=50 Identities=14% Similarity=0.162 Sum_probs=44.0
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhc----cCCCeEEEec
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLM----KQGRQEIYVG 54 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l----~~gg~~~y~G 54 (265)
||..+...+.+.|++++ +|.|||+++|+| ++.+.+|++++| .+ |+++...
T Consensus 328 LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~d~i~~l~k~~~~-G~~~~~~ 381 (415)
T 4aby_A 328 IGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARAHHHYKVEKQVED-GRTVSHV 381 (415)
T ss_dssp CCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCSEEEEEEEEEET-TEEEEEE
T ss_pred CCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhcCeEEEEEEeccC-CceEEEE
Confidence 79999999999999998 599999999997 567889999999 86 7877544
No 58
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.46 E-value=0.0015 Score=66.50 Aligned_cols=52 Identities=21% Similarity=0.317 Sum_probs=46.8
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+...+.+.|++.. .|+|||+++|+++. + ..+|+|++|.+ |+++..|++
T Consensus 1202 lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~~-i-~~~dri~vl~~-G~i~~~g~~ 1253 (1284)
T 3g5u_A 1202 LDTESEKVVQEALDKAR-EGRTCIVIAHRLST-I-QNADLIVVIQN-GKVKEHGTH 1253 (1284)
T ss_dssp CCHHHHHHHHHHHHHHS-SSSCEEEECSCTTG-G-GSCSEEEEEET-BEEEEEECH
T ss_pred CCHHHHHHHHHHHHHhC-CCCEEEEEecCHHH-H-HcCCEEEEEEC-CEEEEECCH
Confidence 79999999999998854 59999999999984 4 55999999998 999999998
No 59
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.20 E-value=0.0017 Score=65.98 Aligned_cols=56 Identities=20% Similarity=0.219 Sum_probs=48.4
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHH
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLT 64 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~ 64 (265)
||+.+...+.+.|+++. +|+|+|+++|+++. + ..+|+|++|.+ |+++..|+. +++.
T Consensus 557 LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-i-~~~d~i~vl~~-G~i~~~g~~----~~l~ 612 (1284)
T 3g5u_A 557 LDTESEAVVQAALDKAR-EGRTTIVIAHRLST-V-RNADVIAGFDG-GVIVEQGNH----DELM 612 (1284)
T ss_dssp SCHHHHHHHHHHHHHHH-TTSEEEEECSCHHH-H-TTCSEEEECSS-SCCCCEECH----HHHH
T ss_pred CCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEEC-CEEEEECCH----HHHH
Confidence 79999999999998875 59999999999863 3 55999999998 999999998 6654
No 60
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.10 E-value=0.0048 Score=56.99 Aligned_cols=55 Identities=15% Similarity=0.077 Sum_probs=46.4
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCC-CeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQG-RQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~g-g~~~y~G~~ 56 (265)
||..++.++++.|+++++ .|.|||+++|++. ++..++|+|++|..+ |.....|++
T Consensus 416 LD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~ 472 (538)
T 3ozx_A 416 LDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSP 472 (538)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCC
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCCh
Confidence 799999999999999987 6999999999985 677889999999841 455556665
No 61
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.99 E-value=0.0045 Score=60.81 Aligned_cols=51 Identities=14% Similarity=0.167 Sum_probs=45.6
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEE-EecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEI-YVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~-y~G~~ 56 (265)
||..+...+.+.|++ .|.|||+++|++. .+.+.+|++++|.+ |+++ +.|+.
T Consensus 579 LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~-G~iv~~~G~~ 630 (986)
T 2iw3_A 579 LDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEG-LKLRKYKGNF 630 (986)
T ss_dssp CCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEESCH
T ss_pred CCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEEC-CeeecCCCCH
Confidence 799999999999998 5999999999974 67788999999998 8886 78987
No 62
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.64 E-value=0.0035 Score=58.72 Aligned_cols=50 Identities=18% Similarity=0.264 Sum_probs=44.4
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEE
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIY 52 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y 52 (265)
||+.++.++.+.|+++.+.|.|||+++|+.. ++...+|++++|.. |..+|
T Consensus 252 LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~-~~~~~~drv~vl~~-~~~~~ 301 (608)
T 3j16_B 252 LDVKQRLNAAQIIRSLLAPTKYVICVEHDLS-VLDYLSDFVCIIYG-VPSVY 301 (608)
T ss_dssp CCHHHHHHHHHHHHGGGTTTCEEEEECSCHH-HHHHHCSEEEEEES-CTTTE
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeC-Ccccc
Confidence 7999999999999999988999999999985 67889999999985 65555
No 63
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.45 E-value=0.0053 Score=57.52 Aligned_cols=45 Identities=22% Similarity=0.279 Sum_probs=41.0
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
||+.++.++++.|+++.+.|.|||+++|++. .+...+|++++|..
T Consensus 259 LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~-~~~~~adri~vl~~ 303 (607)
T 3bk7_A 259 LDIRQRLKVARVIRRLANEGKAVLVVEHDLA-VLDYLSDVIHVVYG 303 (607)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEES
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHHhhCCEEEEECC
Confidence 8999999999999999888999999999975 66778999999984
No 64
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=95.38 E-value=0.0082 Score=55.10 Aligned_cols=43 Identities=19% Similarity=0.246 Sum_probs=38.9
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
||..++..+.+.|+++++ |.|||+++|+|. +...+|++++|.+
T Consensus 430 ld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~~~ 472 (517)
T 4ad8_A 430 IGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKVEK 472 (517)
T ss_dssp CCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEec
Confidence 799999999999999998 999999999974 5577999999976
No 65
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.30 E-value=0.0077 Score=55.59 Aligned_cols=45 Identities=20% Similarity=0.251 Sum_probs=41.3
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
||+.++.++++.|+++.+.|.|||+++|+.. .+.+.+|++++|..
T Consensus 189 LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~-~~~~~~dri~vl~~ 233 (538)
T 1yqt_A 189 LDIRQRLNAARAIRRLSEEGKSVLVVEHDLA-VLDYLSDIIHVVYG 233 (538)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcC
Confidence 8999999999999999888999999999975 77888999999985
No 66
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.20 E-value=0.011 Score=48.44 Aligned_cols=54 Identities=11% Similarity=0.217 Sum_probs=37.9
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.++.++++.|+++++.....|+.+-+ ..++.+.+|++++|.+ |+++..|++
T Consensus 176 LD~~~~~~i~~~l~~l~~~~g~tvi~vtH-d~~~~~~~d~i~~l~~-G~i~~~~~~ 229 (235)
T 3tif_A 176 LDSKTGEKIMQLLKKLNEEDGKTVVVVTH-DINVARFGERIIYLKD-GEVEREEKL 229 (235)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCEEEEECS-CHHHHTTSSEEEEEET-TEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEcC-CHHHHHhCCEEEEEEC-CEEEEEcCh
Confidence 79999999999999998740000000000 0024588999999998 999999998
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.15 E-value=0.017 Score=49.50 Aligned_cols=53 Identities=23% Similarity=0.220 Sum_probs=42.9
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhh--hhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDEL--FLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~--~~l~~gg~~~y~G~~ 56 (265)
||+.....+.+.|++++ .|.+||+++|++ ++.+.+|++ +++.+|+..+.....
T Consensus 254 LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~--~~~~~~d~~~~v~~~~g~s~~~~~~~ 308 (322)
T 1e69_A 254 LDDYNAERFKRLLKENS-KHTQFIVITHNK--IVMEAADLLHGVTMVNGVSAIVPVEV 308 (322)
T ss_dssp CCHHHHHHHHHHHHHHT-TTSEEEEECCCT--TGGGGCSEEEEEEESSSCEEEEECCC
T ss_pred CCHHHHHHHHHHHHHhc-CCCeEEEEECCH--HHHhhCceEEEEEEeCCEEEEEEEEc
Confidence 79999999999999985 488999999996 467889986 778875566655554
No 68
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.83 E-value=0.0088 Score=55.20 Aligned_cols=49 Identities=16% Similarity=0.260 Sum_probs=42.7
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEE
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIY 52 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y 52 (265)
||+.++.++.+.|+++.+ |+|||+++|+.. ++...+|++++|.. |...|
T Consensus 169 LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~-~~~~~~d~i~vl~~-~~~~~ 217 (538)
T 3ozx_A 169 LDVRERMNMAKAIRELLK-NKYVIVVDHDLI-VLDYLTDLIHIIYG-ESSVY 217 (538)
T ss_dssp CCHHHHHHHHHHHHHHCT-TSEEEEECSCHH-HHHHHCSEEEEEEE-ETTTE
T ss_pred CCHHHHHHHHHHHHHHhC-CCEEEEEEeChH-HHHhhCCEEEEecC-Ccccc
Confidence 799999999999999976 999999999985 78889999999985 54443
No 69
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.37 E-value=0.017 Score=53.15 Aligned_cols=46 Identities=15% Similarity=0.088 Sum_probs=39.7
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHH--------HHHhhhhhhhccC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIE--------IFEAFDELFLMKQ 46 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~--------~~~~fd~~~~l~~ 46 (265)
||+..+.++.++++++++.|.|||+++|++... .-.++|++++|.+
T Consensus 156 lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 156 ASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 578889999999999988899999999998742 3455999999987
No 70
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.07 E-value=0.028 Score=47.35 Aligned_cols=45 Identities=13% Similarity=0.231 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhh-CCCeEEEEecCCC-H--------------------HHHHhhhhhhhccCCCe
Q 039187 4 RAASIVIRTVRNTVD-TGRTVVCTIHQPS-I--------------------EIFEAFDELFLMKQGRQ 49 (265)
Q Consensus 4 ~~~~~~~~~l~~l~~-~~~tvi~~ihqp~-~--------------------~~~~~fd~~~~l~~gg~ 49 (265)
....++++.|+++++ .|.|||+++|..+ . .+.+.+|+|++|.+ |+
T Consensus 170 ~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~-~~ 236 (296)
T 1cr0_A 170 KMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER-NQ 236 (296)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEE-C-
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEec-Cc
Confidence 556789999999987 5999999999962 2 67788999999998 54
No 71
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.52 E-value=0.011 Score=51.56 Aligned_cols=52 Identities=13% Similarity=0.042 Sum_probs=46.1
Q ss_pred CchHHHHHHHHHHHHHhh--CCC-----eEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD--TGR-----TVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~--~~~-----tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+....++.++++++.+ .|. ||++++|+.+ ...+|+++++.+ |+++..|+.
T Consensus 192 ldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~d-G~Ivl~~~l 250 (347)
T 2obl_A 192 FPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILD-GHIVLTREL 250 (347)
T ss_dssp BCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCS-EEEEBCHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeC-cEEEEeCCH
Confidence 689999999999999985 487 8999999998 366999999998 999998887
No 72
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.19 E-value=0.013 Score=52.65 Aligned_cols=52 Identities=12% Similarity=-0.003 Sum_probs=45.8
Q ss_pred CchHHHHHHHHHHHHHhh---C-CC-----eEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVD---T-GR-----TVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~---~-~~-----tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.+..++.+.++++.+ . |+ ||++++|+.+ ...+|+++++.+ |+++..|.+
T Consensus 279 lD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~d-G~Ivl~~~~ 339 (438)
T 2dpy_A 279 YPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILD-GHIVLSRRL 339 (438)
T ss_dssp CCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSS-EEEEECHHH
T ss_pred CCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeC-cEEEEeCCH
Confidence 689999999999999977 3 64 9999999998 467999999998 999998876
No 73
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.98 E-value=0.03 Score=45.49 Aligned_cols=42 Identities=14% Similarity=0.247 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEecCCCHH--------HHHhh-hhhhhccC
Q 039187 5 AASIVIRTVRNTVDTGRTVVCTIHQPSIE--------IFEAF-DELFLMKQ 46 (265)
Q Consensus 5 ~~~~~~~~l~~l~~~~~tvi~~ihqp~~~--------~~~~f-d~~~~l~~ 46 (265)
....+.++++.+.+.|.|||+++|++... +.+++ |++++|..
T Consensus 157 ~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 157 IREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 34458888888888899999999998643 15678 99999963
No 74
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.63 E-value=0.051 Score=43.45 Aligned_cols=45 Identities=9% Similarity=0.093 Sum_probs=36.0
Q ss_pred chHHHHHHHHHHHHHhh-CCCeEEEEecCCC-------HHHHHhhhhhhhccC
Q 039187 2 DARAASIVIRTVRNTVD-TGRTVVCTIHQPS-------IEIFEAFDELFLMKQ 46 (265)
Q Consensus 2 D~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~-------~~~~~~fd~~~~l~~ 46 (265)
|+....++++.|+++++ .|.|||+++|... ..+.+.+|++++|.+
T Consensus 139 d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 139 KPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRR 191 (235)
T ss_dssp CGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEE
Confidence 66677899999999986 6999999999983 347788999999986
No 75
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=91.83 E-value=0.043 Score=42.77 Aligned_cols=51 Identities=14% Similarity=0.154 Sum_probs=36.9
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecC-CCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQ-PSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihq-p~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+..... .+.++++...+.+||.|.|. +. ++-+.+|+|+ .+ |+++..|++
T Consensus 128 ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~--~~-g~~~~~~~~ 179 (189)
T 2bdt_A 128 MGERCLEL-VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK--TN-PRFIFCMAG 179 (189)
T ss_dssp -CGGGGHH-HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH--HC-GGGSCC---
T ss_pred CCHHHHHH-HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh--hC-CcEEEeecC
Confidence 35545555 67777776668899999998 64 6778899999 76 999999998
No 76
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=90.44 E-value=0.09 Score=45.27 Aligned_cols=40 Identities=23% Similarity=0.105 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCe
Q 039187 7 SIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQ 49 (265)
Q Consensus 7 ~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~ 49 (265)
.++.+.|+.+...+.|+++|+|.++ ..+.+|++++|.+ |.
T Consensus 252 ~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~-g~ 291 (330)
T 2pt7_A 252 SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSS-SN 291 (330)
T ss_dssp THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHH-TS
T ss_pred HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhc-CC
Confidence 4567788887655568999999987 5688999999998 54
No 77
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=90.19 E-value=0.16 Score=45.15 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=38.7
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
||+.....+++.|+++...|.++|+++|++ +..+.+|+++.+..
T Consensus 368 LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~~~ 411 (430)
T 1w1w_A 368 LDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGVYR 411 (430)
T ss_dssp CCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEEEE
Confidence 799999999999999876688999999984 56788999999874
No 78
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=90.15 E-value=0.22 Score=38.65 Aligned_cols=42 Identities=10% Similarity=0.170 Sum_probs=34.5
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhcc
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMK 45 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~ 45 (265)
||+.+...+.+.|+++++. .++|+++|++ .+.+.+|+++.+.
T Consensus 99 LD~~~~~~~~~~l~~~~~~-~~~ivith~~--~~~~~ad~i~~v~ 140 (173)
T 3kta_B 99 LDDANVKRVADLIKESSKE-SQFIVITLRD--VMMANADKIIGVS 140 (173)
T ss_dssp CCHHHHHHHHHHHHHHTTT-SEEEEECSCH--HHHTTCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHhccC-CEEEEEEecH--HHHHhCCEEEEEE
Confidence 7999999999999998764 5677888875 5678899998654
No 79
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.00 E-value=0.058 Score=49.49 Aligned_cols=44 Identities=16% Similarity=0.074 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEecCCC---------HHHHHhhhhhhhccCCCe
Q 039187 5 AASIVIRTVRNTVDTGRTVVCTIHQPS---------IEIFEAFDELFLMKQGRQ 49 (265)
Q Consensus 5 ~~~~~~~~l~~l~~~~~tvi~~ihqp~---------~~~~~~fd~~~~l~~gg~ 49 (265)
....+.++++.+.+.|.|||++.|++. ..+..++|++++|.+ |+
T Consensus 392 ~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~-ge 444 (525)
T 1tf7_A 392 FRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY-VE 444 (525)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE-EE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEE-EE
Confidence 677888889998888999999999982 456678999999998 65
No 80
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=89.63 E-value=0.26 Score=48.43 Aligned_cols=53 Identities=6% Similarity=-0.061 Sum_probs=45.2
Q ss_pred CchHHHHHH-HHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 1 LDARAASIV-IRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 1 LD~~~~~~~-~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
||+.....+ ...++.+++ .|.++|+++|.+ ++.+++|++..+.+ |++...+..
T Consensus 754 lD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~n-g~v~~~~~~ 808 (934)
T 3thx_A 754 TSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNN-LHVTALTTE 808 (934)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEE-EEEEEEEET
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEe-eEEEEEecC
Confidence 588877777 677788887 599999999994 67789999999998 999998887
No 81
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=89.48 E-value=0.14 Score=46.26 Aligned_cols=36 Identities=6% Similarity=-0.088 Sum_probs=29.8
Q ss_pred CCCeEEEEecCCC--H---HHHHhhhh-----hhhcc-CCCeEEEecCC
Q 039187 19 TGRTVVCTIHQPS--I---EIFEAFDE-----LFLMK-QGRQEIYVGLL 56 (265)
Q Consensus 19 ~~~tvi~~ihqp~--~---~~~~~fd~-----~~~l~-~gg~~~y~G~~ 56 (265)
.|.|+|+++|+.. . ++.+++|+ +++|. + |+++ .|++
T Consensus 287 ~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~-G~iv-~g~~ 333 (460)
T 2npi_A 287 LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKL-DGVS-AVDD 333 (460)
T ss_dssp TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCC-TTCC-CCCH
T ss_pred hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCC-CcEE-ECCH
Confidence 4889999999987 2 45578999 99999 6 8888 8886
No 82
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=83.67 E-value=0.57 Score=40.69 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 7 SIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 7 ~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
.+.++.+.+++..|.+|++|+|..+.. +.+|+++.|..
T Consensus 208 ~e~~~~~~~~~~~G~~vl~t~H~~~~~--~~~dRli~l~~ 245 (356)
T 3jvv_A 208 LETIRLALTAAETGHLVFGTLHTTSAA--KTIDRVVDVFP 245 (356)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESCSSHH--HHHHHHHHTSC
T ss_pred HHHHHHHHHHHhcCCEEEEEEccChHH--HHHHHHhhhcC
Confidence 344666667777899999999998743 88999999976
No 83
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=81.97 E-value=0.66 Score=36.74 Aligned_cols=40 Identities=5% Similarity=-0.002 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhh-CCCeEEEEecCCCH---HHHHhhhhhhhccC
Q 039187 7 SIVIRTVRNTVD-TGRTVVCTIHQPSI---EIFEAFDELFLMKQ 46 (265)
Q Consensus 7 ~~~~~~l~~l~~-~~~tvi~~ihqp~~---~~~~~fd~~~~l~~ 46 (265)
.++++.|+++++ .|.|||+++|.... .+.+.+|+++.|.+
T Consensus 156 ~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~ 199 (231)
T 4a74_A 156 AKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRK 199 (231)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEe
Confidence 378888998887 59999999995442 35667899999987
No 84
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=81.07 E-value=1.3 Score=34.78 Aligned_cols=40 Identities=5% Similarity=-0.026 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhh-CCCeEEEEecCCC------------HHHHHhhhhhhhccC
Q 039187 7 SIVIRTVRNTVD-TGRTVVCTIHQPS------------IEIFEAFDELFLMKQ 46 (265)
Q Consensus 7 ~~~~~~l~~l~~-~~~tvi~~ihqp~------------~~~~~~fd~~~~l~~ 46 (265)
.++++.|+++++ .|.|||++.|... ..+.+.+|.+++|.+
T Consensus 132 ~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~ 184 (220)
T 2cvh_A 132 SRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDK 184 (220)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEE
Confidence 557777899987 5999999999765 256778999999987
No 85
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=72.67 E-value=4.7 Score=30.53 Aligned_cols=33 Identities=6% Similarity=0.069 Sum_probs=27.3
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHH
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIE 33 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~ 33 (265)
+|......+.+.+.+..+.|+++|+|+|.+..+
T Consensus 114 ~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 114 LSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 466777788888888877899999999998754
No 86
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=71.91 E-value=3.6 Score=30.55 Aligned_cols=33 Identities=3% Similarity=0.157 Sum_probs=25.3
Q ss_pred chHHHHHHHHHHHHHhhCCCe-EEEEecCCCHHH
Q 039187 2 DARAASIVIRTVRNTVDTGRT-VVCTIHQPSIEI 34 (265)
Q Consensus 2 D~~~~~~~~~~l~~l~~~~~t-vi~~ihqp~~~~ 34 (265)
|...+..+.+.+.++.++|++ +|+|+|.+..++
T Consensus 96 ~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l 129 (149)
T 2kjq_A 96 GNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQL 129 (149)
T ss_dssp CSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTS
T ss_pred ChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHc
Confidence 344577888999988888887 889999776544
No 87
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=70.50 E-value=6.3 Score=32.29 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=23.9
Q ss_pred hhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 17 VDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 17 ~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
+..|.+|++++|.++ ..+.+|+++.|.+
T Consensus 120 ~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 120 AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 457999999999986 5688999999976
No 88
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=69.01 E-value=3.4 Score=32.79 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhh-CCCeEEEEecCCCHH-------HHHhhhhhhhccC
Q 039187 5 AASIVIRTVRNTVD-TGRTVVCTIHQPSIE-------IFEAFDELFLMKQ 46 (265)
Q Consensus 5 ~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~-------~~~~fd~~~~l~~ 46 (265)
...+.+..|+++++ .|.||+++.|..... +.+.+|.++.|.+
T Consensus 147 ~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 147 MARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp GHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 34566677777765 799999999987642 4577899999875
No 89
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=66.37 E-value=4 Score=40.45 Aligned_cols=53 Identities=9% Similarity=-0.019 Sum_probs=36.2
Q ss_pred CchHHH-HHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEE--EecCC
Q 039187 1 LDARAA-SIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEI--YVGLL 56 (265)
Q Consensus 1 LD~~~~-~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~--y~G~~ 56 (265)
+|+... ..+++.|+.+++. |.++|+++|.+. .+...+|++.+++ |++. +.|++
T Consensus 881 td~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~~--g~~~~~~~~~~ 937 (1022)
T 2o8b_B 881 TATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVRL--GHMACMVENEC 937 (1022)
T ss_dssp SCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEEE--EEEEEC-----
T ss_pred CChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceeec--CeEEEEEecCc
Confidence 466663 4578899999876 999999999964 3445588887764 7887 45654
No 90
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=63.32 E-value=4.8 Score=38.82 Aligned_cols=52 Identities=4% Similarity=-0.121 Sum_probs=39.7
Q ss_pred chHHHHHH-HHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 2 DARAASIV-IRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 2 D~~~~~~~-~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
|+.....+ ...++.+.+ .|.++|+++|++. +.+++|++..+.+ |++.+....
T Consensus 700 d~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n-~~~~~~~~~ 753 (800)
T 1wb9_A 700 STYDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVAN-VHLDALEHG 753 (800)
T ss_dssp SSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEE-EEEEEEEET
T ss_pred ChhHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEE-EEEEEEEcC
Confidence 44444443 778888887 5999999999974 5578999988988 888876554
No 91
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=60.96 E-value=3.9 Score=32.41 Aligned_cols=41 Identities=20% Similarity=0.164 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhh-CCCeEEEEecCCCHH------------------HHHhhhhhhhccC
Q 039187 6 ASIVIRTVRNTVD-TGRTVVCTIHQPSIE------------------IFEAFDELFLMKQ 46 (265)
Q Consensus 6 ~~~~~~~l~~l~~-~~~tvi~~ihqp~~~------------------~~~~fd~~~~l~~ 46 (265)
..++++.|+++++ .|.|||++.|..... +-+.+|.+++|.+
T Consensus 149 ~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~ 208 (243)
T 1n0w_A 149 LARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 208 (243)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEE
Confidence 4567777888887 599999999965421 1126788888886
No 92
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=60.69 E-value=7.5 Score=29.74 Aligned_cols=45 Identities=16% Similarity=0.073 Sum_probs=28.7
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEec--CCCHHHHHhhhhhhhccCCCeEEEe
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIH--QPSIEIFEAFDELFLMKQGRQEIYV 53 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ih--qp~~~~~~~fd~~~~l~~gg~~~y~ 53 (265)
||+.....+.+.|++ .+.|+|+++| +....+-..+|+ .+ |+++..
T Consensus 114 ld~~~~~~l~~~l~~---~~~~~i~~~H~~h~~~~~~~i~~r----~~-~~i~~~ 160 (178)
T 1ye8_A 114 FSKKFRDLVRQIMHD---PNVNVVATIPIRDVHPLVKEIRRL----PG-AVLIEL 160 (178)
T ss_dssp GCHHHHHHHHHHHTC---TTSEEEEECCSSCCSHHHHHHHTC----TT-CEEEEC
T ss_pred CCHHHHHHHHHHHhc---CCCeEEEEEccCCCchHHHHHHhc----CC-cEEEEe
Confidence 466677777776655 5777999998 344455555555 43 677653
No 93
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=58.30 E-value=4.9 Score=32.01 Aligned_cols=49 Identities=10% Similarity=0.062 Sum_probs=34.0
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHh
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFK 68 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~ 68 (265)
||...+.++.+.++ .+.||++++|++. ++ ..++ +.+ | .+++ +++...+.
T Consensus 115 LD~~~~~~i~~~l~----~~~tI~i~th~~~-~l---~~Rl--~~r-G----~~~~----e~i~~rl~ 163 (219)
T 1s96_A 115 IDWQGAQQIRQKMP----HARSIFILPPSKI-EL---DRRL--RGR-G----QDSE----EVIAKRMA 163 (219)
T ss_dssp CCHHHHHHHHHHCT----TCEEEEEECSSHH-HH---HHHH--HTT-S----CSCH----HHHHHHHH
T ss_pred ECHHHHHHHHHHcc----CCEEEEEECCCHH-HH---HHHH--HHc-C----CCCH----HHHHHHHH
Confidence 68888888888776 5889999999864 22 2343 676 5 4555 56665554
No 94
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=55.79 E-value=6.3 Score=34.62 Aligned_cols=40 Identities=18% Similarity=0.122 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhh-CCCeEEEEecCCC------------------HHHHHhhhhhhhccC
Q 039187 7 SIVIRTVRNTVD-TGRTVVCTIHQPS------------------IEIFEAFDELFLMKQ 46 (265)
Q Consensus 7 ~~~~~~l~~l~~-~~~tvi~~ihqp~------------------~~~~~~fd~~~~l~~ 46 (265)
.++++.|+++++ .|.|||++.|.-. ..+-+..|.++.|.+
T Consensus 304 ~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~ 362 (400)
T 3lda_A 304 AKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKK 362 (400)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEe
Confidence 678899999998 5999999999821 223455777777776
No 95
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=53.37 E-value=7.2 Score=31.94 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhh-CCCeEEEEecCCC
Q 039187 5 AASIVIRTVRNTVD-TGRTVVCTIHQPS 31 (265)
Q Consensus 5 ~~~~~~~~l~~l~~-~~~tvi~~ihqp~ 31 (265)
...++++.|+++++ .|.|||++.|...
T Consensus 155 ~~~~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 155 PMAQVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 34788999999986 6999999999874
No 96
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=51.33 E-value=13 Score=36.48 Aligned_cols=49 Identities=8% Similarity=0.067 Sum_probs=37.1
Q ss_pred CchHHHHHHH-HHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhh-ccCCCeEEE
Q 039187 1 LDARAASIVI-RTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFL-MKQGRQEIY 52 (265)
Q Consensus 1 LD~~~~~~~~-~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~-l~~gg~~~y 52 (265)
||+.....+. ..++.+++ .|.|||+++|++ ++.+++|+.-- +.+ +++.+
T Consensus 765 lD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~~~~v~n-~~~~~ 816 (918)
T 3thx_B 765 TSTHDGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNYSHQVGN-YHMGF 816 (918)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHTTTTEEE-EEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhcccceEE-EEEEE
Confidence 6888888887 78888876 699999999996 45577777642 555 56655
No 97
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=51.14 E-value=11 Score=32.20 Aligned_cols=49 Identities=6% Similarity=-0.103 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187 6 ASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL 56 (265)
Q Consensus 6 ~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~ 56 (265)
..++++.|+++++ .|.|||++.|... +.-.+|++...... |+.+.+++.
T Consensus 261 ~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~-G~~l~~~~~ 310 (349)
T 1pzn_A 261 LAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIG-GHILAHSAT 310 (349)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECC-----------------CCCCCTTCS
T ss_pred HHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCC-cceEeecCc
Confidence 4567778888887 6999999999865 44445666666664 776655553
No 98
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=50.31 E-value=5.6 Score=31.42 Aligned_cols=25 Identities=8% Similarity=0.049 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEecCCC
Q 039187 5 AASIVIRTVRNTVDTGRTVVCTIHQPS 31 (265)
Q Consensus 5 ~~~~~~~~l~~l~~~~~tvi~~ihqp~ 31 (265)
+..++++.|+++ +.|+||| ++|++.
T Consensus 135 ~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 135 TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 456788889988 6789999 999975
No 99
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=47.31 E-value=12 Score=33.05 Aligned_cols=62 Identities=11% Similarity=0.071 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhh-ccCCCeEEEecCCCCCcchHHHHHh
Q 039187 4 RAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFL-MKQGRQEIYVGLLGRHSCHLTRYFK 68 (265)
Q Consensus 4 ~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~-l~~gg~~~y~G~~~~~~~~~~~yF~ 68 (265)
.++..+...+..+.+.|+.||+++|.|..++-.+-+++.- +.. |.++..+|+.. ++..+.+.
T Consensus 211 ~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~-g~~i~l~~p~~--e~r~~iL~ 273 (440)
T 2z4s_A 211 GVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQM-GLVAKLEPPDE--ETRKSIAR 273 (440)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHS-SBCCBCCCCCH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccC-CeEEEeCCCCH--HHHHHHHH
Confidence 5677888888888888999999999987654334455544 454 77777777732 33444443
No 100
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=44.82 E-value=11 Score=33.36 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhh-CCCeEEEEec---------C--CC-------HHHHHhhhhhhhccC
Q 039187 5 AASIVIRTVRNTVD-TGRTVVCTIH---------Q--PS-------IEIFEAFDELFLMKQ 46 (265)
Q Consensus 5 ~~~~~~~~l~~l~~-~~~tvi~~ih---------q--p~-------~~~~~~fd~~~~l~~ 46 (265)
...++++.||.+|+ .|.+||++.| . |. ..+-+.+|.|++|.+
T Consensus 338 ~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r 398 (454)
T 2r6a_A 338 EVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYR 398 (454)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEec
Confidence 34678889999997 5999999988 2 43 146778999999987
No 101
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=44.26 E-value=10 Score=28.87 Aligned_cols=40 Identities=18% Similarity=0.111 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 7 SIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 7 ~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
.++++.++...++|..+|+.+..+.+.+.+..|.++.+..
T Consensus 93 ~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~ 132 (186)
T 1m3s_A 93 KSLIHTAAKAKSLHGIVAALTINPESSIGKQADLIIRMPG 132 (186)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESCTTSHHHHHCSEEEECSC
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCchHHhCCEEEEeCC
Confidence 5677777777778988888888888889999998887775
No 102
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=43.02 E-value=2.8 Score=36.83 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=39.3
Q ss_pred chHHHHHHHHHHHHH-hhCCCeEEEEecCCCHHHHHhhhhhh-hccCCC-eEEEecCC
Q 039187 2 DARAASIVIRTVRNT-VDTGRTVVCTIHQPSIEIFEAFDELF-LMKQGR-QEIYVGLL 56 (265)
Q Consensus 2 D~~~~~~~~~~l~~l-~~~~~tvi~~ihqp~~~~~~~fd~~~-~l~~gg-~~~y~G~~ 56 (265)
|.....+.++.++++ +++|.|++ .|.. .++.+.+|++. +|.+ | ++++.|..
T Consensus 155 D~~~~~k~~~~l~~~~~~~g~ti~--sh~~-~~~~~l~~~i~~~L~~-G~~~~~~~~~ 208 (392)
T 1ni3_A 155 DAEFVEKHLEGLRKITSRGANTLE--MKAK-KEEQAIIEKVYQYLTE-TKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHTTCCSSCSSS--HHHH-HHHHHHHHHHHHHHHT-TCSCGGGSCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCccc--cccH-HHHHHHHHHHHHHhcc-CCceeecCCC
Confidence 455566677778887 66788864 7765 47889999999 9998 8 88888776
No 103
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=42.95 E-value=10 Score=28.72 Aligned_cols=41 Identities=15% Similarity=0.166 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 6 ASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 6 ~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
..++++.++...++|..+|+.+..+.+.+.+.+|.++....
T Consensus 109 t~~~~~~~~~ak~~g~~vi~IT~~~~s~la~~ad~~l~~~~ 149 (183)
T 2xhz_A 109 SSEITALIPVLKRLHVPLICITGRPESSMARAADVHLCVKV 149 (183)
T ss_dssp CHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHSSEEEECCC
T ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCChhHHhCCEEEEeCC
Confidence 35677777777778888888888888889999998887775
No 104
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=42.25 E-value=8.1 Score=29.39 Aligned_cols=40 Identities=5% Similarity=0.024 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 7 SIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 7 ~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
.++++.++...++|.++|+.+..+.+.+.+..|.++....
T Consensus 124 ~~~~~~~~~ak~~g~~vi~iT~~~~s~L~~~ad~~l~~~~ 163 (188)
T 1tk9_A 124 PNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVPS 163 (188)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEGGGTTHHHHCSEEEEESC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCcchHHcCCEEEEeCC
Confidence 4566777776668888888888888888888887776554
No 105
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=42.23 E-value=10 Score=28.77 Aligned_cols=41 Identities=5% Similarity=0.062 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 6 ASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 6 ~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
..++++.++...++|..+|+.+..+.+.+-+..|.++.+..
T Consensus 100 t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~ 140 (187)
T 3sho_A 100 LRDTVAALAGAAERGVPTMALTDSSVSPPARIADHVLVAAT 140 (187)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEESCTTSHHHHHCSEEEECCC
T ss_pred CHHHHHHHHHHHHCCCCEEEEeCCCCCcchhhCcEEEEecC
Confidence 35677777777778998888888888899999998888876
No 106
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=41.93 E-value=18 Score=28.85 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=32.8
Q ss_pred HHHHHHHHHhhCCCeEEEEec---------CCCHHHHHhhhhhhhccC
Q 039187 8 IVIRTVRNTVDTGRTVVCTIH---------QPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 8 ~~~~~l~~l~~~~~tvi~~ih---------qp~~~~~~~fd~~~~l~~ 46 (265)
+.++.++.+++.|.+||++-| .++.++..++|.|.-|..
T Consensus 104 ~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~~ 151 (223)
T 2b8t_A 104 RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLTA 151 (223)
T ss_dssp HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECCE
T ss_pred HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecce
Confidence 466677888888999999999 778899999999998764
No 107
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=41.33 E-value=10 Score=29.03 Aligned_cols=40 Identities=20% Similarity=0.160 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 7 SIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 7 ~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
.++++.++...++|..+|+.+..+.+.+.+..|.++.+..
T Consensus 130 ~~~~~~~~~ak~~g~~vI~IT~~~~s~L~~~ad~~l~~~~ 169 (198)
T 2xbl_A 130 PNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEVPS 169 (198)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSCCCTHHHHCSEEEECSC
T ss_pred HHHHHHHHHHHHCCCeEEEEECCCCCcHHHhCCEEEEeCC
Confidence 4566666666667887777777777778888776665554
No 108
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=40.53 E-value=14 Score=32.49 Aligned_cols=46 Identities=9% Similarity=0.065 Sum_probs=35.8
Q ss_pred CchHHHHHHHHHHHHHh-----hC----CCeEEEEecCCCH-HHHHhhhhhh-hccC
Q 039187 1 LDARAASIVIRTVRNTV-----DT----GRTVVCTIHQPSI-EIFEAFDELF-LMKQ 46 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~-----~~----~~tvi~~ihqp~~-~~~~~fd~~~-~l~~ 46 (265)
||+.+..++.+.++++. +. ..+|++|.|.... .+-+++|++. .|.+
T Consensus 197 LD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 197 PQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 67888899999999985 22 3678999998773 4778899997 6665
No 109
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=40.21 E-value=16 Score=28.07 Aligned_cols=41 Identities=15% Similarity=0.065 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhCCCeEEEEecCCCHHHHHh---hhhhhhccC
Q 039187 6 ASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEA---FDELFLMKQ 46 (265)
Q Consensus 6 ~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~---fd~~~~l~~ 46 (265)
+.++++.++...++|.++|+.+-.+.+.+.+. .|.++....
T Consensus 126 t~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~~~~ad~~l~~~~ 169 (199)
T 1x92_A 126 SANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIRVPS 169 (199)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHCCTTCEEEECSC
T ss_pred CHHHHHHHHHHHHCCCEEEEEECCCCCcHHhccccCCEEEEeCC
Confidence 35667777777678988888888888889888 887776664
No 110
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=39.96 E-value=0.66 Score=39.37 Aligned_cols=36 Identities=8% Similarity=-0.004 Sum_probs=25.2
Q ss_pred ecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhhC
Q 039187 27 IHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLL 70 (265)
Q Consensus 27 ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~~ 70 (265)
+|++. ..+.+|+| +|.+ |++++.|++ +++..+|..+
T Consensus 236 tH~~~--~~~~aD~i-vl~~-G~iv~~g~~----~el~~~y~~l 271 (305)
T 2v9p_A 236 HSRVQ--TFRFEQPC-TDES-GEQPFNITD----ADWKSFFVRL 271 (305)
T ss_dssp TTTEE--EEECCCCC-CCC----CCCCCCH----HHHHHHHHHS
T ss_pred hCCHH--HHHhCCEE-EEeC-CEEEEeCCH----HHHHHHHHHH
Confidence 56654 34679999 9998 999999998 7776666554
No 111
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=38.53 E-value=12 Score=29.11 Aligned_cols=40 Identities=15% Similarity=0.265 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 7 SIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 7 ~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
.++++.++...++|..||+.+-.+.+.+.+.+|.++....
T Consensus 103 ~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~ad~~l~~~~ 142 (200)
T 1vim_A 103 TSVVNISKKAKDIGSKLVAVTGKRDSSLAKMADVVMVVKG 142 (200)
T ss_dssp HHHHHHHHHHHHHTCEEEEEESCTTSHHHHHCSEEEECCS
T ss_pred HHHHHHHHHHHHCCCeEEEEECCCCChHHHhCCEEEEECC
Confidence 4566777776668998888888888899999998888775
No 112
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=38.47 E-value=70 Score=22.43 Aligned_cols=67 Identities=13% Similarity=0.156 Sum_probs=41.5
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCC---HHHHHhhhhhh--hccCCCeEEEecCCCCCcchHHHHHhhCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPS---IEIFEAFDELF--LMKQGRQEIYVGLLGRHSCHLTRYFKLLL 71 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~---~~~~~~fd~~~--~l~~gg~~~y~G~~~~~~~~~~~yF~~~g 71 (265)
||..++..+.+.++++....+.+|+=...-+ +.-...+.++. +-.+|+++...|+. .++.+-|+..|
T Consensus 30 L~f~~a~~~~~~l~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~----~~v~~~l~~~g 101 (130)
T 4dgh_A 30 FFFAAAETFERVMGSIQETPQILILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLISGAN----SRVSQKLVKAG 101 (130)
T ss_dssp CCHHHHHHHHHHHHHSSSCCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEECCC----HHHHHHHHHTT
T ss_pred EeehhHHHHHHHHHHhccCCCEEEEECCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEcCC----HHHHHHHHHcC
Confidence 5677888888888766444566776654433 22222222222 12346888888888 78888887776
No 113
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=36.99 E-value=30 Score=26.76 Aligned_cols=38 Identities=18% Similarity=0.351 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhCCCeEEEEec---------CCCHHHHHhhhhhhhcc
Q 039187 8 IVIRTVRNTVDTGRTVVCTIH---------QPSIEIFEAFDELFLMK 45 (265)
Q Consensus 8 ~~~~~l~~l~~~~~tvi~~ih---------qp~~~~~~~fd~~~~l~ 45 (265)
+.++.|+++++.|..||++-+ .++.++..++|.|.-|.
T Consensus 96 ~~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 96 EIVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred HHHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 347788888888999999998 78889999999997766
No 114
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=35.95 E-value=48 Score=23.76 Aligned_cols=20 Identities=5% Similarity=-0.127 Sum_probs=9.7
Q ss_pred CeEEEecCCCCCcchHHHHHhhCC
Q 039187 48 RQEIYVGLLGRHSCHLTRYFKLLL 71 (265)
Q Consensus 48 g~~~y~G~~~~~~~~~~~yF~~~g 71 (265)
|++...|+. .++.+-|+..|
T Consensus 97 ~~l~l~~~~----~~v~~~l~~~g 116 (143)
T 3llo_A 97 IYVYLAGCS----AQVVNDLTSNR 116 (143)
T ss_dssp CEEEEESCC----HHHHHHHHHTT
T ss_pred CEEEEEeCC----HHHHHHHHhCC
Confidence 445555544 44455554443
No 115
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=35.42 E-value=80 Score=20.95 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=12.7
Q ss_pred CCeEEEecCCCCCcchHHHHHhhCC
Q 039187 47 GRQEIYVGLLGRHSCHLTRYFKLLL 71 (265)
Q Consensus 47 gg~~~y~G~~~~~~~~~~~yF~~~g 71 (265)
|+++...|++ +++.+-|+..|
T Consensus 76 g~~l~l~~~~----~~v~~~l~~~g 96 (110)
T 1sbo_A 76 GKEFILSSLK----ESISRILKLTH 96 (110)
T ss_dssp TCEEEEESCC----HHHHHHHHHTT
T ss_pred CCEEEEEeCC----HHHHHHHHHhC
Confidence 4566666666 56666666554
No 116
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=35.32 E-value=24 Score=27.99 Aligned_cols=45 Identities=9% Similarity=0.108 Sum_probs=36.6
Q ss_pred HHHHHHHHhhCCCeEEEEec---------CCCHHHHHhhhhhhhccCCCeEEEecC
Q 039187 9 VIRTVRNTVDTGRTVVCTIH---------QPSIEIFEAFDELFLMKQGRQEIYVGL 55 (265)
Q Consensus 9 ~~~~l~~l~~~~~tvi~~ih---------qp~~~~~~~fd~~~~l~~gg~~~y~G~ 55 (265)
.++.|++++..|..||++-+ .++.+++.++|.|.-|.. .+..+|.
T Consensus 117 ~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~a--iC~~Cg~ 170 (214)
T 2j9r_A 117 IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQA--VCSACGS 170 (214)
T ss_dssp HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECCC--BCTTTSS
T ss_pred HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeeee--EecCcCC
Confidence 44888888888999999999 899999999999998874 3333444
No 117
>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.75A {Silicibacter pomeroyi dss-3}
Probab=35.29 E-value=16 Score=31.24 Aligned_cols=41 Identities=10% Similarity=0.098 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 6 ASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 6 ~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
+.++++.++...+.|..+|..+..|.+.+-+..|.++.+..
T Consensus 104 T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~ 144 (344)
T 3fj1_A 104 SPDIVAMTRNAGRDGALCVALTNDAASPLAGVSAHTIDIHA 144 (344)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEESCTTSHHHHTSSEEEECCC
T ss_pred CHHHHHHHHHHHHCCCcEEEEECCCCChHHHhcCEeeecCC
Confidence 45677777777778999999999999999999999998876
No 118
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=35.08 E-value=9.4 Score=29.52 Aligned_cols=40 Identities=15% Similarity=0.229 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 7 SIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 7 ~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
.++++.++...++|..||+.+..+.+.+-+..|.++.+..
T Consensus 106 ~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~ 145 (201)
T 3fxa_A 106 GELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSV 145 (201)
T ss_dssp HHHHTTHHHHHHHTCEEEEEESCTTSHHHHHCSEEEECCC
T ss_pred HHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEcCC
Confidence 4566777776668999999999999999999998888875
No 119
>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative phosphosugar isomerase, structural genomics, joint for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis}
Probab=35.06 E-value=16 Score=30.96 Aligned_cols=41 Identities=5% Similarity=0.063 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 6 ASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 6 ~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
+.++++.++...+.|..+|..+..|.+.+-+..|.++.+..
T Consensus 87 T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~ 127 (329)
T 3eua_A 87 TPETVKAAAFARGKGALTIAMTFKPESPLAQEAQYVAQYDW 127 (329)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEESCTTSHHHHHSSEEEECCC
T ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCChHHHhCCEEEEeCC
Confidence 45677777777778999999999999999999999988887
No 120
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=34.15 E-value=18 Score=28.48 Aligned_cols=41 Identities=7% Similarity=0.105 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhh--CCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 6 ASIVIRTVRNTVD--TGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 6 ~~~~~~~l~~l~~--~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
+.++++.++...+ +|..+|+.+..+.+.+.+..|.++....
T Consensus 119 t~~~i~~~~~ak~~~~Ga~vI~IT~~~~s~La~~aD~~l~~~~ 161 (220)
T 3etn_A 119 TREIVELTQLAHNLNPGLKFIVITGNPDSPLASESDVCLSTGH 161 (220)
T ss_dssp CHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHSSEEEECCC
T ss_pred CHHHHHHHHHHHhcCCCCeEEEEECCCCChhHHhCCEEEEcCC
Confidence 4567788888888 8999999999999999999998888775
No 121
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=29.57 E-value=85 Score=22.22 Aligned_cols=21 Identities=14% Similarity=0.070 Sum_probs=10.6
Q ss_pred CCeEEEecCCCCCcchHHHHHhhCC
Q 039187 47 GRQEIYVGLLGRHSCHLTRYFKLLL 71 (265)
Q Consensus 47 gg~~~y~G~~~~~~~~~~~yF~~~g 71 (265)
|+++...|+. .++.+-|+..|
T Consensus 84 g~~l~l~~~~----~~v~~~l~~~g 104 (135)
T 4dgf_A 84 GTILLLSGVS----DRLYGALNRFG 104 (135)
T ss_dssp TCEEEEESCC----HHHHHHHHHHT
T ss_pred CCEEEEEcCC----HHHHHHHHHcC
Confidence 3555555555 45555554443
No 122
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=29.28 E-value=24 Score=26.90 Aligned_cols=40 Identities=15% Similarity=0.104 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhhCCCeEEEEecCCCHHHHHh---hhhhhhcc
Q 039187 6 ASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEA---FDELFLMK 45 (265)
Q Consensus 6 ~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~---fd~~~~l~ 45 (265)
..++++.++...++|..+|+.+..+.+.+-++ .|.++.+.
T Consensus 122 t~~~i~~~~~ak~~g~~vI~IT~~~~s~la~~~~~ad~~l~~~ 164 (196)
T 2yva_A 122 SRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIP 164 (196)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEECTTCHHHHTTCCTTSEEEECS
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCCchhhhcccCCCEEEEeC
Confidence 35667777776668888888888888877776 66555544
No 123
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=29.21 E-value=98 Score=20.77 Aligned_cols=67 Identities=16% Similarity=0.185 Sum_probs=33.8
Q ss_pred CchHHHHHHHHHHHHHhhC--CCeEEEEecC---CCHHHHHhhhhhh--hccCCCeEEEecCCCCCcchHHHHHhhCC
Q 039187 1 LDARAASIVIRTVRNTVDT--GRTVVCTIHQ---PSIEIFEAFDELF--LMKQGRQEIYVGLLGRHSCHLTRYFKLLL 71 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~--~~tvi~~ihq---p~~~~~~~fd~~~--~l~~gg~~~y~G~~~~~~~~~~~yF~~~g 71 (265)
||..++..+.+.+.+.... .+.+++=..+ ..+.-...+.++. +-.+|+++...|++ +++.+-|+..|
T Consensus 22 l~~~~~~~l~~~l~~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~----~~v~~~l~~~g 95 (116)
T 1th8_B 22 LDHHTAEELREQVTDVLENRAIRHIVLNLGQLTFMDSSGLGVILGRYKQIKNVGGQMVVCAVS----PAVKRLFDMSG 95 (116)
T ss_dssp ESHHHHHHHHHHHHHHHHSSCCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCCEEEESCC----HHHHHHHHHHT
T ss_pred eccccHHHHHHHHHHHHhcCCCcEEEEECCCCcEEccHHHHHHHHHHHHHHHhCCeEEEEeCC----HHHHHHHHHhC
Confidence 3556666666666665542 3445443322 2222223322222 12235677777776 66666666554
No 124
>3fkj_A Putative phosphosugar isomerases; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.12A {Salmonella typhimurium LT2}
Probab=29.13 E-value=19 Score=30.80 Aligned_cols=41 Identities=15% Similarity=0.208 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 6 ASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 6 ~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
+.++++.++...+.|..+|..+..|.+.+-+..|.++.+..
T Consensus 102 T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~ 142 (347)
T 3fkj_A 102 TAETVAAARVAREKGAATIGLVYQPDTPLCEYSDYIIEYQW 142 (347)
T ss_dssp CHHHHHHHHHHHHHTCEEEEEESSTTCHHHHTCSEEEECBC
T ss_pred cHHHHHHHHHHHHCCCcEEEEeCCCCChHHhhcCeEEEecc
Confidence 45667777777667999999999999999999999988887
No 125
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=27.93 E-value=1e+02 Score=21.30 Aligned_cols=67 Identities=13% Similarity=0.084 Sum_probs=34.3
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCC---HHHHHhhhhhh-hccCCCeEEEecCCCCCcchHHHHHhhCC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPS---IEIFEAFDELF-LMKQGRQEIYVGLLGRHSCHLTRYFKLLL 71 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~---~~~~~~fd~~~-~l~~gg~~~y~G~~~~~~~~~~~yF~~~g 71 (265)
||..++..+.+.+.++....+.+|+-...-+ +.-...+..+. -+.+|+++...|+. .++.+-|+..|
T Consensus 27 L~f~~a~~l~~~l~~~~~~~~~vilDl~~v~~iDssgl~~L~~~~~~~~~g~~l~l~~~~----~~v~~~l~~~g 97 (118)
T 3ny7_A 27 LFFAAAEGLFTDLESRLEGKRIVILKWDAVPVLDAGGLDAFQRFVKRLPEGCELRVCNVE----FQPLRTMARAG 97 (118)
T ss_dssp BCHHHHHHHHHHHHTTCTTCSEEEEEEEECCCBCHHHHHHHHHHHHHCCTTCEEEEECCC----HHHHHHHHHTT
T ss_pred eEehhHHHHHHHHHHhcCCCcEEEEEcCCCCeecHHHHHHHHHHHHHHHCCCEEEEecCC----HHHHHHHHHcC
Confidence 4556666666666655433455555443322 12222222221 11125677777776 67777777666
No 126
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=27.66 E-value=46 Score=27.77 Aligned_cols=60 Identities=13% Similarity=0.041 Sum_probs=39.5
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhhC
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLL 70 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~~ 70 (265)
||..++..+.+.|.+.. .+.++|+++|+|..-. . -+.++ ...+...|+.. +++.++.+..
T Consensus 146 L~~~~~~~L~~~le~~~-~~~~~Il~t~~~~~l~-~-----~l~sR-~~~~~~~~~~~--~~~~~~l~~~ 205 (354)
T 1sxj_E 146 LTKDAQAALRRTMEKYS-KNIRLIMVCDSMSPII-A-----PIKSQ-CLLIRCPAPSD--SEISTILSDV 205 (354)
T ss_dssp SCHHHHHHHHHHHHHST-TTEEEEEEESCSCSSC-H-----HHHTT-SEEEECCCCCH--HHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhhc-CCCEEEEEeCCHHHHH-H-----HHHhh-ceEEecCCcCH--HHHHHHHHHH
Confidence 57778888888888864 3678999999987421 1 13445 56666666632 5566666643
No 127
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=27.25 E-value=16 Score=30.70 Aligned_cols=31 Identities=19% Similarity=0.148 Sum_probs=26.2
Q ss_pred CchHHHHHHHHHHHHHhh-CCCeEEEEecCCC
Q 039187 1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPS 31 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~ 31 (265)
||+.+..++++.++++.+ .|.|+|+++|...
T Consensus 228 LDa~t~~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 228 LDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp EETTBCTHHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred EcHHHHHHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 577788889999999887 4999999999764
No 128
>3g68_A Putative phosphosugar isomerase; SIS domain, double-SIS DOMA protein, structural genomics, joint center for structural G JCSG; HET: MSE CIT; 1.80A {Clostridium difficile}
Probab=27.04 E-value=17 Score=31.11 Aligned_cols=43 Identities=12% Similarity=0.060 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCe
Q 039187 6 ASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQ 49 (265)
Q Consensus 6 ~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~ 49 (265)
+.++++.++...+.|..+|..+..|.+.+-+..|.++.+.. |.
T Consensus 95 T~e~l~a~~~ak~~ga~~iaIT~~~~S~La~~aD~~l~~~~-g~ 137 (352)
T 3g68_A 95 SYSTYNAMKLAEDKGCKIASMAGCKNALIDEISDYILTVNC-GE 137 (352)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEESSTTCGGGGGCSEECCCCC-CC
T ss_pred CHHHHHHHHHHHHCCCCEEEEeCCCCChHHHhCCEEEEeCC-CC
Confidence 45677777777778999999999999999999999998886 44
No 129
>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A
Probab=26.99 E-value=1.2e+02 Score=20.48 Aligned_cols=67 Identities=10% Similarity=0.058 Sum_probs=34.2
Q ss_pred CchHHHHHHHHHHHHHhh-C-CCeEEEEecCC---CHHHHHhhhhhh--hccCCCeEEEecCCCCCcchHHHHHhhCC
Q 039187 1 LDARAASIVIRTVRNTVD-T-GRTVVCTIHQP---SIEIFEAFDELF--LMKQGRQEIYVGLLGRHSCHLTRYFKLLL 71 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~-~-~~tvi~~ihqp---~~~~~~~fd~~~--~l~~gg~~~y~G~~~~~~~~~~~yF~~~g 71 (265)
||..++..+.+.+.+... . .+.+++=..+- .+.-...+-++. +-.+|+++...|++ +++.+-|+..|
T Consensus 21 l~~~~~~~l~~~l~~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~----~~v~~~l~~~g 94 (117)
T 1h4x_A 21 LDHHAVEQIRAKISTAIFQGAVTTIIWNFERLSFMDSSGVGLVLGRMRELEAVAGRTILLNPS----PTMRKVFQFSG 94 (117)
T ss_dssp ECHHHHHHHHHHHHHHHHHTSCSEEEEEEEEEEEECTHHHHHHHHHHHHHHTTTCEEEEESCC----HHHHHHHHHTT
T ss_pred EchhhHHHHHHHHHHHHhcCCCCEEEEECCCCcEechHHHHHHHHHHHHHHHcCCEEEEEeCC----HHHHHHHHHhC
Confidence 456666677777766553 2 24454433221 122222222221 11235677777777 77777777665
No 130
>3tbf_A Glucosamine--fructose-6-phosphate aminotransferas [isomerizing]; structural genomics; 2.28A {Francisella tularensis subsp}
Probab=25.77 E-value=24 Score=30.43 Aligned_cols=43 Identities=14% Similarity=0.277 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhhCC-CeEEEEecCCCHHHHHhhhhhhhccCCCe
Q 039187 6 ASIVIRTVRNTVDTG-RTVVCTIHQPSIEIFEAFDELFLMKQGRQ 49 (265)
Q Consensus 6 ~~~~~~~l~~l~~~~-~tvi~~ihqp~~~~~~~fd~~~~l~~gg~ 49 (265)
+.++++.++...+.| .++|..+..|.+.+-+..|.++.+.. |.
T Consensus 114 T~e~l~al~~ak~~G~a~~iaIT~~~~S~La~~aD~~l~~~~-g~ 157 (372)
T 3tbf_A 114 TADTLESLRKSKKQNYVGSMCICNVPNSSLVRESDIAFMTKA-GV 157 (372)
T ss_dssp CHHHHHHHHHHTTTTEEEEEEEESSSSSHHHHHSSEEEECCC-CC
T ss_pred CHHHHHHHHHHHHcCCceEEEEcCCCCChHHHhCCEeeeecC-Cc
Confidence 456778888777789 88999999999999999999999886 54
No 131
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=25.65 E-value=17 Score=27.32 Aligned_cols=39 Identities=8% Similarity=0.154 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 7 SIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 7 ~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
.++++.++...++|..+|+.+..+.+ +.+.+|.++....
T Consensus 96 ~~~~~~~~~ak~~g~~vi~IT~~~~s-l~~~ad~~l~~~~ 134 (180)
T 1jeo_A 96 ESVLTVAKKAKNINNNIIAIVCECGN-VVEFADLTIPLEV 134 (180)
T ss_dssp HHHHHHHHHHHTTCSCEEEEESSCCG-GGGGCSEEEECCC
T ss_pred HHHHHHHHHHHHCCCcEEEEeCCCCh-HHHhCCEEEEeCC
Confidence 56677777776788888888888877 8888888777664
No 132
>3knz_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 2.50A {Salmonella enterica subsp}
Probab=25.55 E-value=19 Score=31.07 Aligned_cols=43 Identities=9% Similarity=0.081 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCe
Q 039187 6 ASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQ 49 (265)
Q Consensus 6 ~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~ 49 (265)
+.++++.++...+.|..+|..+..|.+.+-+..|.++.+.. |.
T Consensus 110 T~e~l~a~~~ak~~Ga~~IaIT~~~~S~La~~aD~~l~~~~-g~ 152 (366)
T 3knz_A 110 SLSTLAAMERARNVGHITASMAGVAPATIDRAADYILTVPC-GE 152 (366)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEESSSSCGGGGGCSEECCCCC-CC
T ss_pred CHHHHHHHHHHHHcCCCEEEEECCCCChhhhhcCEEEecCC-Cc
Confidence 45677778877778999999999999999999999999887 54
No 133
>3pvh_A UPF0603 protein AT1G54780, chloroplastic; TAP domain, rossman fold, acid phosphatase, arabidopsis THAL thylakoid lumen, hydrolase; 1.60A {Arabidopsis thaliana} PDB: 3pw9_A 3ptj_A
Probab=25.37 E-value=96 Score=22.82 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=30.4
Q ss_pred CchHHHHHHHHHHHHHhh--CCCeEEEEecCCC--HHHHHhhhhhh
Q 039187 1 LDARAASIVIRTVRNTVD--TGRTVVCTIHQPS--IEIFEAFDELF 42 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~--~~~tvi~~ihqp~--~~~~~~fd~~~ 42 (265)
|+..+..++-+.|+++.+ ..+.+|+++.... .++.+..+++.
T Consensus 25 Ls~~~~~~l~~~l~~le~~t~~qi~Vvtv~~~~~g~~i~~~A~~l~ 70 (153)
T 3pvh_A 25 LSRVTKSDLKKLLSDLEYRKKLRLNFITVRKLTSKADAFEYADQVL 70 (153)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCEEEEEEESCCSSSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhCCEEEEEEEcCCCCCCCHHHHHHHHH
Confidence 567788999999999976 4678888888754 45555555543
No 134
>3hba_A Putative phosphosugar isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE CIT; 2.00A {Shewanella denitrificans OS217}
Probab=25.13 E-value=18 Score=30.75 Aligned_cols=41 Identities=12% Similarity=0.245 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 6 ASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 6 ~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
+.++++.++...+.|..+|..+..|.+.+-+..|.++.+..
T Consensus 103 T~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~ 143 (334)
T 3hba_A 103 SPDILAQARMAKNAGAFCVALVNDETAPIKDIVDVVIPLRA 143 (334)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEESCTTSGGGGTSSEEEECCC
T ss_pred CHHHHHHHHHHHHcCCcEEEEeCCCCChHHHhcCEeeeecC
Confidence 45677777777778999999999999999999999998886
No 135
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=24.87 E-value=42 Score=27.95 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhh-CCCeEEEEecCC
Q 039187 7 SIVIRTVRNTVD-TGRTVVCTIHQP 30 (265)
Q Consensus 7 ~~~~~~l~~l~~-~~~tvi~~ihqp 30 (265)
.+++..||.+|+ .|.+|+++.|..
T Consensus 207 ~~~~~~Lk~lAk~~~i~vi~lsql~ 231 (315)
T 3bh0_A 207 SQISRDLKKMARELDVVVIALSQLS 231 (315)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECCC
T ss_pred HHHHHHHHHHHHHhCCeEEEEeecC
Confidence 567888999998 588998887753
No 136
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=24.66 E-value=53 Score=25.15 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhCCCeEEE---Ee-cCCCHHHHHhhhhhhhccCCCeEEEecC
Q 039187 8 IVIRTVRNTVDTGRTVVC---TI-HQPSIEIFEAFDELFLMKQGRQEIYVGL 55 (265)
Q Consensus 8 ~~~~~l~~l~~~~~tvi~---~i-hqp~~~~~~~fd~~~~l~~gg~~~y~G~ 55 (265)
..++.|+++.+..+++|+ ++ |..+ ..+.|+|..+.+ |+++...+
T Consensus 123 ~~~~~l~~~l~~~~~~ilgti~vsh~~~---~~~vd~i~~~~~-~~i~~~~~ 170 (189)
T 2i3b_A 123 LFIQAVRQTLSTPGTIILGTIPVPKGKP---LALVEEIRNRKD-VKVFNVTK 170 (189)
T ss_dssp HHHHHHHHHHHCSSCCEEEECCCCCSSC---CTTHHHHHTTCC-SEEEECCS
T ss_pred HHHHHHHHHHhCCCcEEEEEeecCCCCc---hHHHHHHeecCC-cEEEEeCh
Confidence 467777777776666553 33 7764 357899999986 88887554
No 137
>2poc_A D-fructose-6- PH, isomerase domain of glutamine-fructose-6-phosphat transaminase (isomerizing); glucosamine-6-phosphate synthase; HET: BG6 UD1; 1.80A {Candida albicans} PDB: 2put_A* 2puv_A* 2puw_A*
Probab=24.65 E-value=32 Score=29.44 Aligned_cols=41 Identities=7% Similarity=0.035 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 6 ASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 6 ~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
+.++++.++...+.|..+|..+..+.+.+-+..|.++.+..
T Consensus 110 T~e~l~a~~~Ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~ 150 (367)
T 2poc_A 110 TADSILALQYCLERGALTVGIVNSVGSSMSRQTHCGVHINA 150 (367)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEESSTTSHHHHHSSEEEECCC
T ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCChHHHhCCEEEEcCC
Confidence 45677777777778988899999999999999999888876
No 138
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Probab=24.32 E-value=1e+02 Score=20.56 Aligned_cols=28 Identities=14% Similarity=-0.018 Sum_probs=22.8
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEec
Q 039187 1 LDARAASIVIRTVRNTVDTGRTVVCTIH 28 (265)
Q Consensus 1 LD~~~~~~~~~~l~~l~~~~~tvi~~ih 28 (265)
+|++....+.+..+++.+.|.++.++--
T Consensus 57 iDssgl~~L~~~~~~~~~~g~~l~l~~~ 84 (99)
T 3oiz_A 57 WDISSVQALDMAVLKFRREGAEVRIVGM 84 (99)
T ss_dssp CSHHHHHHHHHHHHHHHHTTCEEEEESH
T ss_pred cCHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 5888889999999999888887776643
No 139
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=24.18 E-value=15 Score=28.76 Aligned_cols=40 Identities=13% Similarity=0.136 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 7 SIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 7 ~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
.++++.++...++|.++|+.+-.+.+.+.+..|.++.+..
T Consensus 145 ~~~i~~~~~ak~~G~~vIaIT~~~~s~La~~aD~~l~~~~ 184 (212)
T 2i2w_A 145 ANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIRVPH 184 (212)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEETTCGGGTTCSSEEEEECC
T ss_pred HHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEcCC
Confidence 4566777776667888888888887777777777766654
No 140
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=24.14 E-value=18 Score=28.14 Aligned_cols=41 Identities=10% Similarity=0.114 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhh---hhhhhccC
Q 039187 6 ASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAF---DELFLMKQ 46 (265)
Q Consensus 6 ~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~f---d~~~~l~~ 46 (265)
+.++++.++...++|.++|+.+..+.+.+-+.. |.++.+..
T Consensus 127 t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~a~~~d~~l~~~~ 170 (201)
T 3trj_A 127 SENILSAVEEAHDLEMKVIALTGGSGGALQNMYNTDDIELRVPS 170 (201)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEETTCCGGGGTCCTTCEEEEESC
T ss_pred CHHHHHHHHHHHHCCCcEEEEECCCCCHHHHhhccCCEEEEeCC
Confidence 345666666666677777777777777766666 65555443
No 141
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=23.68 E-value=1.5e+02 Score=19.99 Aligned_cols=22 Identities=9% Similarity=0.232 Sum_probs=11.0
Q ss_pred chHHHHHHHHHHHHHhhCCCeE
Q 039187 2 DARAASIVIRTVRNTVDTGRTV 23 (265)
Q Consensus 2 D~~~~~~~~~~l~~l~~~~~tv 23 (265)
||.....+++..+++.+.|..+
T Consensus 56 Dssgl~~L~~~~~~~~~~g~~l 77 (117)
T 4hyl_A 56 SSAGLRVLLSLYRHTSNQQGAL 77 (117)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEE
T ss_pred cHHHHHHHHHHHHHHHHcCCEE
Confidence 4555555555555555444443
No 142
>2zj3_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1; glucosamine-6-phosphate synthase, aldose/ketose isomerase, rossmann-like fold; HET: G6P; 1.90A {Homo sapiens} PDB: 2zj4_A* 2v4m_A*
Probab=23.58 E-value=34 Score=29.43 Aligned_cols=41 Identities=12% Similarity=0.038 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 6 ASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 6 ~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
+.++++.++...+.|..+|+.+..+.+.+-+..|.++.+..
T Consensus 120 T~e~l~a~~~Ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~ 160 (375)
T 2zj3_A 120 TADTLMGLRYCKERGALTVGITNTVGSSISRETDCGVHINA 160 (375)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHSSEEEECCC
T ss_pred CHHHHHHHHHHHHcCCcEEEEECCCCChHHHhCCEeeeecC
Confidence 45677777777778988899999999999999999888876
No 143
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=23.36 E-value=1.5e+02 Score=20.59 Aligned_cols=67 Identities=10% Similarity=0.060 Sum_probs=38.3
Q ss_pred CchHHHHHHHHHHHH-Hhh-CCCeEEEEecCCC---HHHHHhhhhhh--hccCCCeEEEecCCCCCcchHHHHHhhCC
Q 039187 1 LDARAASIVIRTVRN-TVD-TGRTVVCTIHQPS---IEIFEAFDELF--LMKQGRQEIYVGLLGRHSCHLTRYFKLLL 71 (265)
Q Consensus 1 LD~~~~~~~~~~l~~-l~~-~~~tvi~~ihqp~---~~~~~~fd~~~--~l~~gg~~~y~G~~~~~~~~~~~yF~~~g 71 (265)
||..++..+.+.+.+ +.. ..+.+++=..+-+ +.-...+-.+. +-.+|+++...|++ +++.+-|+..|
T Consensus 31 Ld~~~a~~l~~~l~~~~~~~~~~~vvlDls~V~~iDSsGl~~L~~~~~~~~~~g~~l~l~~~~----~~v~~~l~~~g 104 (125)
T 2ka5_A 31 LNIENAHLFKKWVFDEFLNKGYNKIFLVLSDVESIDSFSLGVIVNILKSISSSGGFFALVSPN----EKVERVLSLTN 104 (125)
T ss_dssp CSGGGTHHHHHHHHHHTTTTTCCEEEEECTTCSCCCHHHHHHHHHHHHHHHHHTCEEEEECCC----HHHHHHHHHTT
T ss_pred EecccHHHHHHHHHHHHhhCCCCEEEEECCCCCEEcHHHHHHHHHHHHHHHHcCCEEEEEeCC----HHHHHHHHHcC
Confidence 466667777777777 543 3456666555443 22222222221 11235778888887 77778887776
No 144
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=22.90 E-value=46 Score=28.59 Aligned_cols=33 Identities=18% Similarity=0.349 Sum_probs=25.2
Q ss_pred HHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 11 RTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 11 ~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
..++. +..|.+|++|+|..+ +.+.+|+++.|..
T Consensus 226 ~~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~~ 258 (372)
T 2ewv_A 226 TALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 258 (372)
T ss_dssp HHHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTSC
T ss_pred HHHHH-HhcCCEEEEEECcch--HHHHHHHHHHhcC
Confidence 34443 457999999999965 6788999988864
No 145
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=22.22 E-value=38 Score=27.29 Aligned_cols=38 Identities=8% Similarity=0.268 Sum_probs=32.7
Q ss_pred HHHHHHHHhhCCCeEEEEecC---------CCHHHHHhhhhhhhccC
Q 039187 9 VIRTVRNTVDTGRTVVCTIHQ---------PSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 9 ~~~~l~~l~~~~~tvi~~ihq---------p~~~~~~~fd~~~~l~~ 46 (265)
+.+.++.+++.|..||++-+. ++.++..++|.|.-|..
T Consensus 105 v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelka 151 (234)
T 2orv_A 105 IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTA 151 (234)
T ss_dssp HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECCE
T ss_pred HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeeee
Confidence 566667777789999999999 99999999999998874
No 146
>1moq_A Glucosamine 6-phosphate synthase; glutamine amidotransferase; HET: GLP MES; 1.57A {Escherichia coli} SCOP: c.80.1.1 PDB: 1mor_A* 1mos_A*
Probab=21.74 E-value=37 Score=29.04 Aligned_cols=43 Identities=9% Similarity=0.139 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhhCC-CeEEEEecCCCHHHHHhhhhhhhccCCCe
Q 039187 6 ASIVIRTVRNTVDTG-RTVVCTIHQPSIEIFEAFDELFLMKQGRQ 49 (265)
Q Consensus 6 ~~~~~~~l~~l~~~~-~tvi~~ihqp~~~~~~~fd~~~~l~~gg~ 49 (265)
+.++++.++...++| ..+|+.+..+.+.+-+..|.++.+.. |.
T Consensus 112 T~e~l~a~~~ak~~G~a~viaIT~~~~S~La~~ad~~l~~~~-~~ 155 (368)
T 1moq_A 112 TADTLAGLRLSKELGYLGSLAICNVPGSSLVRESDLALMTNA-GT 155 (368)
T ss_dssp CHHHHHHHHHHTTTTCSEEEEEESSTTCHHHHHSSEEEECCC-CC
T ss_pred CHHHHHHHHHHHHcCCCeEEEEECCCCChHHHhCCEEEEcCC-CC
Confidence 456777888777789 88888899999999999998888886 44
No 147
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=21.58 E-value=21 Score=29.81 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187 6 ASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ 46 (265)
Q Consensus 6 ~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~ 46 (265)
+..+++.++...+.|..+|+.+..|.+.+.+..|.++....
T Consensus 153 T~~vi~al~~Ak~~Ga~~IaIT~~~~S~La~~AD~~I~~~~ 193 (306)
T 1nri_A 153 TPYVIAGLQYAKSLGALTISIASNPKSEMAEIADIAIETIV 193 (306)
T ss_dssp CHHHHHHHHHHHHHTCEEEEEESSTTCHHHHHSSEEEECCC
T ss_pred CHHHHHHHHHHHHCCCEEEEEECCCCChHHHhCCEEEEcCC
Confidence 35677777777778999999999999999999999888875
Done!