BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039188
         (341 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll
           C Biosynthesis
 pdb|1X1A|A Chain A, Crystal Structure Of Bchu Complexed With
           S-Adenosyl-L-Methionine
 pdb|1X1B|A Chain A, Crystal Structure Of Bchu Complexed With
           S-Adenosyl-L-Homocysteine
 pdb|1X1C|A Chain A, Crystal Structure Of Bchu Complexed With
           S-Adenosyl-L-Homocysteine And Zn2+
 pdb|1X1D|A Chain A, Crystal Structure Of Bchu Complexed With
           S-Adenosyl-L-Homocysteine And Zn-Bacteriopheophorbide D
          Length = 359

 Score = 30.0 bits (66), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 121 YSGEEECDFRGTPHLELMKKEIDHNVLSHSKKGPKDL 157
           Y    E  F+G      MK  I+ ++ SH  +GPKDL
Sbjct: 31  YHRANELVFKGLIEFSCMKAAIELDLFSHMAEGPKDL 67


>pdb|3TAD|A Chain A, Crystal Structure Of The Liprin-AlphaLIPRIN-Beta Complex
 pdb|3TAD|B Chain B, Crystal Structure Of The Liprin-AlphaLIPRIN-Beta Complex
          Length = 297

 Score = 28.5 bits (62), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 50/141 (35%), Gaps = 20/141 (14%)

Query: 2   RAGAPF------KIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDV 55
           R G PF       +V + +L  G  AW       +V S  +MS + D E         ++
Sbjct: 31  RKGLPFAQWDGPTVVAWLELWLGMPAWYVAACRANVKSGAIMSALSDTEIQR------EI 84

Query: 56  XXXXXXXXXXXSLYWDQAISPTRARGIPWASVFGNHDDAAFEW-PLEWLSSPGIPQLRCP 114
                       L   + +S T     P +     + D   EW   EWL S G+PQ R  
Sbjct: 85  GISNPLHRLKLRLAIQEMVSLTSPSAPPTSRTTLAYGDMNHEWIGNEWLPSLGLPQYR-- 142

Query: 115 TEANSSYSGEEECDFRGTPHL 135
                SY  E   D R   HL
Sbjct: 143 -----SYFMECLVDARMLDHL 158


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,841,929
Number of Sequences: 62578
Number of extensions: 447518
Number of successful extensions: 931
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 929
Number of HSP's gapped (non-prelim): 6
length of query: 341
length of database: 14,973,337
effective HSP length: 100
effective length of query: 241
effective length of database: 8,715,537
effective search space: 2100444417
effective search space used: 2100444417
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)