Query 039188
Match_columns 341
No_of_seqs 176 out of 1957
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 07:11:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039188.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039188hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1432 Predicted DNA repair e 100.0 6.6E-54 1.4E-58 391.2 28.8 297 2-341 49-377 (379)
2 PRK11148 cyclic 3',5'-adenosin 100.0 3.8E-33 8.1E-38 259.4 25.1 240 3-332 11-265 (275)
3 cd07383 MPP_Dcr2 Saccharomyces 100.0 4.1E-33 9E-38 247.1 20.8 197 5-304 1-199 (199)
4 cd07395 MPP_CSTP1 Homo sapiens 100.0 3.2E-29 6.9E-34 231.3 24.8 242 4-319 2-254 (262)
5 cd07396 MPP_Nbla03831 Homo sap 100.0 3.8E-28 8.2E-33 224.9 22.5 228 7-318 1-262 (267)
6 cd07402 MPP_GpdQ Enterobacter 100.0 1.2E-27 2.6E-32 217.4 21.9 228 8-319 1-239 (240)
7 cd00839 MPP_PAPs purple acid p 99.9 1E-22 2.2E-27 190.7 25.6 262 4-340 2-293 (294)
8 cd07399 MPP_YvnB Bacillus subt 99.9 2.8E-23 6.1E-28 186.2 19.1 200 7-325 1-209 (214)
9 TIGR03767 P_acnes_RR metalloph 99.9 2E-21 4.3E-26 188.4 24.4 132 160-318 290-432 (496)
10 cd07401 MPP_TMEM62_N Homo sapi 99.9 2.6E-21 5.7E-26 178.0 19.2 197 9-283 2-212 (256)
11 cd07378 MPP_ACP5 Homo sapiens 99.9 8.7E-21 1.9E-25 176.2 20.2 244 7-330 1-276 (277)
12 cd07393 MPP_DR1119 Deinococcus 99.9 1.9E-20 4.2E-25 169.9 18.7 205 9-301 1-229 (232)
13 COG1409 Icc Predicted phosphoh 99.8 1.9E-19 4.2E-24 167.5 22.9 207 7-300 1-218 (301)
14 cd00842 MPP_ASMase acid sphing 99.8 8.3E-20 1.8E-24 171.5 19.3 208 45-311 68-296 (296)
15 PLN02533 probable purple acid 99.8 3.7E-19 8.1E-24 174.6 24.1 257 4-340 137-417 (427)
16 TIGR03768 RPA4764 metallophosp 99.8 8.5E-19 1.8E-23 168.6 22.6 146 160-319 291-452 (492)
17 cd07392 MPP_PAE1087 Pyrobaculu 99.8 4.1E-18 8.9E-23 148.5 18.2 181 9-293 1-185 (188)
18 TIGR03729 acc_ester putative p 99.8 3.3E-18 7.2E-23 155.8 17.8 90 193-295 145-235 (239)
19 cd08163 MPP_Cdc1 Saccharomyces 99.8 2.3E-17 4.9E-22 151.7 18.2 186 36-286 36-231 (257)
20 PTZ00422 glideosome-associated 99.7 1.6E-15 3.4E-20 145.4 23.5 275 4-339 24-327 (394)
21 PF00149 Metallophos: Calcineu 99.7 8E-17 1.7E-21 135.3 6.4 77 7-95 1-79 (200)
22 cd00840 MPP_Mre11_N Mre11 nucl 99.7 2.1E-15 4.6E-20 135.0 14.4 87 8-95 1-90 (223)
23 cd07404 MPP_MS158 Microscilla 99.6 1E-15 2.2E-20 131.6 10.5 69 9-95 1-69 (166)
24 cd07400 MPP_YydB Bacillus subt 99.6 1.2E-14 2.6E-19 121.8 12.9 79 9-92 1-79 (144)
25 cd07388 MPP_Tt1561 Thermus the 99.6 1.3E-13 2.7E-18 124.0 19.8 72 6-94 4-75 (224)
26 KOG1378 Purple acid phosphatas 99.6 2.4E-13 5.2E-18 130.9 22.1 256 5-339 146-435 (452)
27 PRK11340 phosphodiesterase Yae 99.5 8.1E-13 1.7E-17 122.7 16.1 78 5-94 48-125 (271)
28 cd08165 MPP_MPPE1 human MPPE1 99.5 4.2E-13 9.2E-18 114.4 12.9 85 10-94 1-89 (156)
29 TIGR00583 mre11 DNA repair pro 99.5 6E-12 1.3E-16 122.4 21.6 84 5-95 2-124 (405)
30 cd07385 MPP_YkuE_C Bacillus su 99.5 1.3E-12 2.8E-17 117.2 15.3 77 6-95 1-77 (223)
31 KOG2679 Purple (tartrate-resis 99.5 8.5E-13 1.8E-17 118.3 12.4 83 195-299 191-274 (336)
32 PF12850 Metallophos_2: Calcin 99.4 2.7E-13 6E-18 114.4 7.8 55 260-317 101-155 (156)
33 KOG3770 Acid sphingomyelinase 99.3 6.1E-11 1.3E-15 117.1 18.6 230 45-328 210-459 (577)
34 PRK09453 phosphodiesterase; Pr 99.3 1.2E-10 2.6E-15 101.7 17.6 76 7-94 1-76 (182)
35 TIGR00619 sbcd exonuclease Sbc 99.3 9.5E-12 2.1E-16 114.3 8.3 88 7-95 1-89 (253)
36 cd07397 MPP_DevT Myxococcus xa 99.3 3.1E-10 6.8E-15 102.5 17.5 64 7-95 1-64 (238)
37 PHA02546 47 endonuclease subun 99.3 1.2E-11 2.6E-16 118.4 8.4 85 7-94 1-89 (340)
38 TIGR00040 yfcE phosphoesterase 99.3 3.7E-10 8E-15 96.2 16.5 63 7-94 1-64 (158)
39 cd07379 MPP_239FB Homo sapiens 99.2 1.7E-10 3.6E-15 95.8 13.0 62 8-94 1-63 (135)
40 COG2129 Predicted phosphoester 99.2 1.8E-09 3.9E-14 95.3 20.0 75 5-95 2-78 (226)
41 PF14582 Metallophos_3: Metall 99.2 1.9E-10 4.2E-15 101.3 13.7 77 7-95 6-103 (255)
42 PRK10966 exonuclease subunit S 99.2 2.7E-11 5.9E-16 118.4 8.9 85 7-95 1-88 (407)
43 COG0420 SbcD DNA repair exonuc 99.2 3.1E-11 6.8E-16 117.7 7.8 86 7-95 1-89 (390)
44 cd08166 MPP_Cdc1_like_1 unchar 99.2 5.7E-10 1.2E-14 97.8 13.1 86 10-95 1-94 (195)
45 cd00841 MPP_YfcE Escherichia c 99.1 2.1E-09 4.5E-14 91.1 13.7 49 267-317 100-148 (155)
46 cd07394 MPP_Vps29 Homo sapiens 99.1 1.6E-08 3.4E-13 88.1 18.4 65 8-94 1-65 (178)
47 COG2908 Uncharacterized protei 99.0 2.5E-09 5.3E-14 95.4 9.4 76 10-94 1-80 (237)
48 cd07391 MPP_PF1019 Pyrococcus 99.0 1.4E-09 3E-14 94.2 7.1 84 10-95 1-89 (172)
49 PRK05340 UDP-2,3-diacylglucosa 99.0 2.5E-09 5.4E-14 97.6 8.9 79 7-94 1-83 (241)
50 COG1408 Predicted phosphohydro 99.0 3E-09 6.5E-14 99.1 9.4 76 5-95 43-119 (284)
51 cd07410 MPP_CpdB_N Escherichia 98.9 2.1E-07 4.7E-12 86.6 20.3 87 7-94 1-95 (277)
52 cd07403 MPP_TTHA0053 Thermus t 98.9 1.3E-08 2.8E-13 84.0 10.6 38 43-93 20-57 (129)
53 cd07384 MPP_Cdc1_like Saccharo 98.9 4.3E-09 9.2E-14 91.1 7.5 86 10-95 1-101 (171)
54 cd07406 MPP_CG11883_N Drosophi 98.9 1.7E-07 3.6E-12 86.4 17.3 82 7-94 1-83 (257)
55 TIGR01854 lipid_A_lpxH UDP-2,3 98.9 5.4E-09 1.2E-13 94.8 7.3 77 9-94 1-81 (231)
56 COG1768 Predicted phosphohydro 98.8 2E-07 4.3E-12 79.3 14.8 80 7-95 1-87 (230)
57 cd00845 MPP_UshA_N_like Escher 98.8 2.1E-06 4.5E-11 78.6 22.2 81 7-94 1-82 (252)
58 TIGR00024 SbcD_rel_arch putati 98.8 1.5E-08 3.3E-13 91.3 7.3 82 8-94 16-102 (225)
59 COG1407 Predicted ICC-like pho 98.7 4.1E-08 8.8E-13 87.9 7.0 87 7-95 20-111 (235)
60 cd07408 MPP_SA0022_N Staphyloc 98.6 8.3E-06 1.8E-10 75.1 20.4 82 7-94 1-82 (257)
61 cd07386 MPP_DNA_pol_II_small_a 98.6 1.2E-07 2.6E-12 86.6 7.3 79 10-95 2-95 (243)
62 cd07411 MPP_SoxB_N Thermus the 98.6 2E-05 4.4E-10 72.8 22.0 84 7-95 1-96 (264)
63 cd07398 MPP_YbbF-LpxH Escheric 98.5 1.5E-07 3.3E-12 83.9 5.1 76 10-95 1-83 (217)
64 PRK04036 DNA polymerase II sma 98.5 4.7E-07 1E-11 91.1 8.8 85 4-95 241-344 (504)
65 cd07390 MPP_AQ1575 Aquifex aeo 98.5 5.4E-07 1.2E-11 77.6 7.8 77 10-95 2-83 (168)
66 cd07409 MPP_CD73_N CD73 ecto-5 98.5 5.4E-05 1.2E-09 70.7 21.7 85 7-95 1-95 (281)
67 cd00838 MPP_superfamily metall 98.5 5.1E-07 1.1E-11 72.5 7.1 71 10-94 1-71 (131)
68 cd07412 MPP_YhcR_N Bacillus su 98.4 5.4E-05 1.2E-09 70.9 21.6 85 7-94 1-88 (288)
69 COG0622 Predicted phosphoester 98.3 2.6E-05 5.6E-10 67.4 15.1 66 6-95 1-66 (172)
70 PHA02239 putative protein phos 98.3 2.2E-06 4.9E-11 77.8 8.3 71 7-94 1-73 (235)
71 KOG2310 DNA repair exonuclease 98.3 3.4E-06 7.3E-11 82.7 9.3 85 4-95 11-134 (646)
72 PRK09419 bifunctional 2',3'-cy 98.2 7.1E-05 1.5E-09 82.7 19.7 77 6-95 660-737 (1163)
73 PRK00166 apaH diadenosine tetr 98.1 6E-06 1.3E-10 76.7 7.3 66 7-95 1-70 (275)
74 KOG3662 Cell division control 98.1 9.6E-06 2.1E-10 78.2 8.5 92 4-95 46-145 (410)
75 cd08164 MPP_Ted1 Saccharomyces 98.1 8.4E-06 1.8E-10 71.5 7.2 61 35-95 34-112 (193)
76 cd07425 MPP_Shelphs Shewanella 97.9 4.1E-05 8.9E-10 68.3 8.0 50 45-95 32-81 (208)
77 COG0737 UshA 5'-nucleotidase/2 97.9 0.00054 1.2E-08 69.5 16.4 89 4-95 24-116 (517)
78 cd07423 MPP_PrpE Bacillus subt 97.9 5.1E-05 1.1E-09 68.9 7.8 68 7-95 1-81 (234)
79 cd07407 MPP_YHR202W_N Saccharo 97.8 0.0012 2.6E-08 61.7 17.0 88 5-94 4-97 (282)
80 PRK09418 bifunctional 2',3'-cy 97.8 0.0011 2.3E-08 70.0 18.4 89 6-95 39-143 (780)
81 PRK09419 bifunctional 2',3'-cy 97.8 0.00071 1.5E-08 74.9 17.4 89 6-95 41-140 (1163)
82 cd07424 MPP_PrpA_PrpB PrpA and 97.8 5.1E-05 1.1E-09 67.6 7.0 66 8-95 2-68 (207)
83 cd07405 MPP_UshA_N Escherichia 97.8 0.0055 1.2E-07 57.4 20.5 83 7-95 1-88 (285)
84 cd08162 MPP_PhoA_N Synechococc 97.8 0.0021 4.5E-08 61.0 17.4 82 7-95 1-92 (313)
85 cd07422 MPP_ApaH Escherichia c 97.8 6.3E-05 1.4E-09 69.2 6.9 63 10-95 2-68 (257)
86 PRK13625 bis(5'-nucleosyl)-tet 97.8 7.3E-05 1.6E-09 68.4 7.2 67 7-94 1-79 (245)
87 PF09423 PhoD: PhoD-like phosp 97.8 0.00098 2.1E-08 66.5 15.8 113 178-300 263-408 (453)
88 TIGR01390 CycNucDiestase 2',3' 97.7 0.0029 6.3E-08 65.6 19.6 89 6-95 2-100 (626)
89 PRK09420 cpdB bifunctional 2', 97.7 0.0032 6.9E-08 65.5 19.7 90 5-95 24-123 (649)
90 TIGR01530 nadN NAD pyrophospha 97.7 0.0021 4.6E-08 65.6 18.0 85 7-95 1-95 (550)
91 PRK11439 pphA serine/threonine 97.7 7.2E-05 1.6E-09 67.2 6.5 66 7-94 17-83 (218)
92 cd00144 MPP_PPP_family phospho 97.7 7.3E-05 1.6E-09 67.0 6.2 68 11-95 2-69 (225)
93 PRK09968 serine/threonine-spec 97.7 0.00012 2.6E-09 65.8 7.0 67 7-95 15-82 (218)
94 PRK11907 bifunctional 2',3'-cy 97.7 0.0043 9.3E-08 65.7 19.3 89 6-95 115-214 (814)
95 PRK09558 ushA bifunctional UDP 97.6 0.0083 1.8E-07 61.4 20.5 82 5-95 33-122 (551)
96 cd07413 MPP_PA3087 Pseudomonas 97.5 0.00023 4.9E-09 64.2 6.8 45 45-95 33-77 (222)
97 TIGR00668 apaH bis(5'-nucleosy 97.5 0.00023 5E-09 66.0 6.8 65 8-95 2-70 (279)
98 cd07421 MPP_Rhilphs Rhilph pho 97.4 0.0005 1.1E-08 64.0 8.2 70 8-94 3-80 (304)
99 COG4186 Predicted phosphoester 97.4 0.00086 1.9E-08 56.1 8.4 80 8-95 5-87 (186)
100 cd07382 MPP_DR1281 Deinococcus 97.0 0.14 3.1E-06 47.1 19.7 71 8-95 1-71 (255)
101 cd07387 MPP_PolD2_C PolD2 (DNA 97.0 0.0028 6.1E-08 58.3 8.1 80 8-95 1-108 (257)
102 COG1311 HYS2 Archaeal DNA poly 96.9 0.0019 4.1E-08 63.3 6.3 81 5-95 224-322 (481)
103 PF04042 DNA_pol_E_B: DNA poly 96.8 0.0028 6E-08 56.3 6.4 77 9-95 1-92 (209)
104 TIGR00282 metallophosphoestera 96.7 0.25 5.5E-06 45.7 18.1 71 7-95 1-72 (266)
105 cd00844 MPP_Dbr1_N Dbr1 RNA la 96.7 0.0044 9.5E-08 57.3 6.5 51 44-94 27-86 (262)
106 smart00156 PP2Ac Protein phosp 96.6 0.0085 1.8E-07 55.7 7.8 72 8-95 29-100 (271)
107 cd07416 MPP_PP2B PP2B, metallo 96.3 0.015 3.2E-07 55.0 8.0 72 8-95 44-115 (305)
108 PTZ00235 DNA polymerase epsilo 96.1 0.048 1.1E-06 50.7 9.8 82 3-95 24-123 (291)
109 cd07420 MPP_RdgC Drosophila me 96.0 0.015 3.2E-07 55.3 6.2 69 8-95 52-124 (321)
110 cd07418 MPP_PP7 PP7, metalloph 96.0 0.021 4.5E-07 55.3 7.1 70 7-95 66-139 (377)
111 cd07415 MPP_PP2A_PP4_PP6 PP2A, 95.9 0.025 5.4E-07 52.9 7.3 72 8-95 43-114 (285)
112 KOG4419 5' nucleotidase [Nucle 95.9 0.077 1.7E-06 53.5 10.9 61 198-285 212-273 (602)
113 cd07414 MPP_PP1_PPKL PP1, PPKL 95.8 0.025 5.4E-07 53.1 7.0 72 8-95 51-122 (293)
114 PTZ00480 serine/threonine-prot 95.6 0.03 6.5E-07 53.1 6.5 72 8-95 60-131 (320)
115 PTZ00239 serine/threonine prot 95.4 0.057 1.2E-06 51.0 7.5 72 8-95 44-115 (303)
116 cd07419 MPP_Bsu1_C Arabidopsis 95.3 0.079 1.7E-06 50.2 8.4 44 48-95 85-128 (311)
117 cd07417 MPP_PP5_C PP5, C-termi 95.3 0.042 9E-07 52.2 6.5 70 7-95 60-133 (316)
118 PTZ00244 serine/threonine-prot 95.2 0.046 1E-06 51.4 6.4 71 9-95 54-124 (294)
119 COG3540 PhoD Phosphodiesterase 95.2 0.21 4.5E-06 49.3 10.7 96 177-280 300-417 (522)
120 cd07380 MPP_CWF19_N Schizosacc 94.6 0.074 1.6E-06 44.9 5.4 55 33-92 13-68 (150)
121 PF13277 YmdB: YmdB-like prote 93.5 3.4 7.4E-05 37.8 14.2 53 35-95 17-69 (253)
122 cd00838 MPP_superfamily metall 91.4 0.31 6.7E-06 38.3 4.3 24 260-283 94-117 (131)
123 cd07381 MPP_CapA CapA and rela 91.1 3.8 8.1E-05 37.0 11.7 37 259-296 198-234 (239)
124 COG1692 Calcineurin-like phosp 89.7 16 0.00034 33.4 13.9 70 7-94 1-71 (266)
125 smart00854 PGA_cap Bacterial c 88.2 9.8 0.00021 34.3 12.0 37 259-296 196-232 (239)
126 COG5555 Cytolysin, a secreted 86.3 1.9 4.2E-05 40.0 6.0 90 197-291 252-344 (392)
127 cd07398 MPP_YbbF-LpxH Escheric 82.3 1.7 3.6E-05 38.3 3.9 36 260-296 180-215 (217)
128 KOG3818 DNA polymerase epsilon 81.9 7.2 0.00016 38.4 8.1 82 3-95 279-370 (525)
129 TIGR01854 lipid_A_lpxH UDP-2,3 81.1 3.2 7E-05 37.3 5.4 25 260-284 176-200 (231)
130 cd07389 MPP_PhoD Bacillus subt 78.5 4.6 0.0001 35.9 5.5 53 42-95 26-103 (228)
131 PRK05340 UDP-2,3-diacylglucosa 78.0 5.2 0.00011 36.2 5.8 54 258-318 177-231 (241)
132 KOG0373 Serine/threonine speci 77.4 3.3 7E-05 37.1 3.9 47 45-95 71-118 (306)
133 PF09587 PGA_cap: Bacterial ca 73.6 59 0.0013 29.4 11.5 78 197-297 167-244 (250)
134 KOG3325 Membrane coat complex 72.6 20 0.00043 30.2 7.2 76 259-338 97-179 (183)
135 PF02350 Epimerase_2: UDP-N-ac 71.0 9.3 0.0002 36.7 5.8 45 33-89 55-99 (346)
136 KOG0374 Serine/threonine speci 69.4 5.6 0.00012 38.0 3.8 72 8-95 60-132 (331)
137 KOG0372 Serine/threonine speci 63.9 9.7 0.00021 34.7 4.0 45 47-95 71-115 (303)
138 TIGR01769 GGGP geranylgeranylg 62.0 1.2E+02 0.0025 27.0 11.1 51 37-95 16-67 (205)
139 COG1646 Predicted phosphate-bi 61.8 1.1E+02 0.0023 27.9 10.1 51 37-95 33-84 (240)
140 TIGR01768 GGGP-family geranylg 61.6 61 0.0013 29.2 8.7 46 41-95 23-69 (223)
141 COG0381 WecB UDP-N-acetylgluco 59.1 24 0.00052 34.4 6.0 48 32-91 79-127 (383)
142 cd02812 PcrB_like PcrB_like pr 56.1 82 0.0018 28.3 8.6 53 35-95 15-68 (219)
143 KOG3947 Phosphoesterases [Gene 56.1 33 0.00071 31.9 6.0 66 5-94 60-126 (305)
144 PRK04169 geranylgeranylglycery 55.2 69 0.0015 29.0 8.0 47 40-95 27-74 (232)
145 KOG2476 Uncharacterized conser 53.9 28 0.00061 34.6 5.5 70 7-92 6-76 (528)
146 PF14639 YqgF: Holliday-juncti 53.6 52 0.0011 27.6 6.5 56 31-94 49-109 (150)
147 TIGR03568 NeuC_NnaA UDP-N-acet 52.4 41 0.00089 32.4 6.6 47 34-92 82-129 (365)
148 KOG0371 Serine/threonine prote 51.2 29 0.00064 31.9 4.9 44 44-95 84-132 (319)
149 PRK13600 putative ribosomal pr 49.8 63 0.0014 24.4 5.8 46 37-92 21-66 (84)
150 cd02067 B12-binding B12 bindin 47.7 61 0.0013 25.5 5.9 53 34-94 39-93 (119)
151 PF03437 BtpA: BtpA family; I 47.3 61 0.0013 29.8 6.4 68 9-89 141-208 (254)
152 cd07384 MPP_Cdc1_like Saccharo 45.8 23 0.00049 30.3 3.2 14 268-281 133-146 (171)
153 cd07425 MPP_Shelphs Shewanella 44.1 30 0.00065 30.6 3.9 20 264-283 162-181 (208)
154 cd04502 SGNH_hydrolase_like_7 43.4 88 0.0019 26.0 6.6 52 34-87 39-95 (171)
155 PF06874 FBPase_2: Firmicute f 42.9 28 0.00061 36.0 3.8 52 34-94 173-224 (640)
156 PRK09968 serine/threonine-spec 40.9 34 0.00074 30.5 3.7 32 268-301 178-209 (218)
157 PF07997 DUF1694: Protein of u 40.7 93 0.002 25.1 5.8 49 32-90 49-97 (120)
158 PF00072 Response_reg: Respons 39.7 1E+02 0.0022 23.0 5.9 51 36-94 34-84 (112)
159 COG1358 RPL8A Ribosomal protei 38.1 1.3E+02 0.0029 24.1 6.3 50 36-94 34-83 (116)
160 KOG3325 Membrane coat complex 37.6 79 0.0017 26.7 5.0 66 8-95 2-67 (183)
161 cd04501 SGNH_hydrolase_like_4 37.5 1.5E+02 0.0033 24.7 7.2 52 34-87 48-102 (183)
162 PRK00994 F420-dependent methyl 36.3 1.1E+02 0.0024 27.9 6.1 43 36-87 51-93 (277)
163 PRK01018 50S ribosomal protein 35.9 1.4E+02 0.003 23.0 6.0 47 37-93 24-70 (99)
164 TIGR02855 spore_yabG sporulati 34.7 36 0.00078 31.5 2.8 20 35-54 143-162 (283)
165 PF05582 Peptidase_U57: YabG p 34.0 37 0.00081 31.6 2.8 21 34-54 143-163 (287)
166 cd01838 Isoamyl_acetate_hydrol 33.9 1.5E+02 0.0033 24.8 6.7 54 34-87 49-113 (199)
167 PRK13602 putative ribosomal pr 32.3 1.6E+02 0.0035 21.9 5.6 48 37-94 19-66 (82)
168 PRK02228 V-type ATP synthase s 32.1 61 0.0013 25.1 3.4 48 32-89 31-79 (100)
169 KOG4184 Predicted sugar kinase 31.9 68 0.0015 30.9 4.2 52 33-85 226-279 (478)
170 cd01829 SGNH_hydrolase_peri2 S 31.7 2E+02 0.0043 24.4 7.1 53 35-87 49-114 (200)
171 KOG0377 Protein serine/threoni 31.5 26 0.00057 34.6 1.5 44 48-95 195-238 (631)
172 COG1927 Mtd Coenzyme F420-depe 31.0 1.5E+02 0.0032 26.6 5.9 43 36-87 51-93 (277)
173 COG3598 RepA RecA-family ATPas 30.7 2E+02 0.0044 27.7 7.1 79 5-87 158-238 (402)
174 cd01836 FeeA_FeeB_like SGNH_hy 30.3 1.7E+02 0.0037 24.6 6.4 43 43-87 65-112 (191)
175 COG2086 FixA Electron transfer 30.1 2E+02 0.0043 26.6 6.9 44 8-60 82-125 (260)
176 KOG2863 RNA lariat debranching 30.0 82 0.0018 30.5 4.4 52 44-95 29-89 (456)
177 COG2248 Predicted hydrolase (m 30.0 88 0.0019 28.9 4.4 41 3-57 173-213 (304)
178 COG3172 NadR Predicted ATPase/ 29.9 2.1E+02 0.0046 24.7 6.4 55 36-90 105-165 (187)
179 PRK10799 metal-binding protein 29.4 73 0.0016 29.0 4.0 20 259-280 81-100 (247)
180 TIGR01012 Sa_S2_E_A ribosomal 29.1 98 0.0021 27.3 4.6 37 45-94 108-158 (196)
181 cd08164 MPP_Ted1 Saccharomyces 29.0 31 0.00067 30.4 1.4 13 269-281 144-156 (193)
182 PF02421 FeoB_N: Ferrous iron 28.5 1E+02 0.0022 26.1 4.4 47 38-93 71-117 (156)
183 PF04413 Glycos_transf_N: 3-De 28.4 94 0.002 26.9 4.4 45 33-90 83-127 (186)
184 PF10994 DUF2817: Protein of u 28.2 93 0.002 29.9 4.6 46 180-227 52-99 (341)
185 PTZ00346 histone deacetylase; 28.2 1.7E+02 0.0038 29.0 6.6 47 39-89 262-315 (429)
186 PRK00025 lpxB lipid-A-disaccha 28.1 1.6E+02 0.0035 27.9 6.4 47 34-92 74-120 (380)
187 COG1105 FruK Fructose-1-phosph 27.8 5.3E+02 0.012 24.5 9.6 54 26-85 108-163 (310)
188 cd01822 Lysophospholipase_L1_l 27.7 2.9E+02 0.0063 22.6 7.3 52 34-87 53-107 (177)
189 COG2039 Pcp Pyrrolidone-carbox 27.5 66 0.0014 28.3 3.1 27 29-55 44-70 (207)
190 COG3855 Fbp Uncharacterized pr 27.2 64 0.0014 32.2 3.3 48 38-94 183-230 (648)
191 PF01993 MTD: methylene-5,6,7, 27.0 1.4E+02 0.003 27.3 5.1 45 35-88 49-93 (276)
192 TIGR02707 butyr_kinase butyrat 26.8 1.3E+02 0.0028 29.0 5.4 36 45-89 293-328 (351)
193 PF06925 MGDG_synth: Monogalac 26.5 62 0.0013 27.3 2.9 19 34-52 78-96 (169)
194 PTZ00365 60S ribosomal protein 26.4 1.8E+02 0.0039 26.8 5.8 51 34-94 137-188 (266)
195 PTZ00063 histone deacetylase; 26.3 2E+02 0.0042 28.8 6.6 47 39-89 244-297 (436)
196 cd01839 SGNH_arylesterase_like 25.8 3.1E+02 0.0067 23.5 7.3 48 33-80 66-117 (208)
197 cd01828 sialate_O-acetylestera 25.8 3.1E+02 0.0067 22.5 7.1 51 34-87 38-93 (169)
198 cd02071 MM_CoA_mut_B12_BD meth 25.1 1.9E+02 0.0041 22.9 5.3 49 34-90 39-89 (122)
199 COG1412 Uncharacterized protei 24.9 2.2E+02 0.0048 23.5 5.6 32 47-94 99-130 (136)
200 TIGR00236 wecB UDP-N-acetylglu 24.7 2.2E+02 0.0047 27.0 6.6 23 33-55 74-96 (365)
201 cd01139 TroA_f Periplasmic bin 24.6 1.3E+02 0.0027 28.4 4.9 38 42-88 88-125 (342)
202 PF01248 Ribosomal_L7Ae: Ribos 23.8 1.6E+02 0.0035 22.0 4.5 44 36-88 22-65 (95)
203 PTZ00222 60S ribosomal protein 23.8 2.6E+02 0.0056 25.8 6.3 52 34-94 137-188 (263)
204 PF04900 Fcf1: Fcf1; InterPro 23.1 2.2E+02 0.0047 21.8 5.1 42 33-91 53-95 (101)
205 PRK00039 ruvC Holliday junctio 22.7 3.2E+02 0.0069 23.2 6.5 52 34-85 50-101 (164)
206 cd03786 GT1_UDP-GlcNAc_2-Epime 22.6 2.6E+02 0.0056 26.1 6.6 44 35-90 78-121 (363)
207 smart00475 53EXOc 5'-3' exonuc 22.2 3.2E+02 0.0069 25.1 6.8 56 33-89 36-105 (259)
208 COG2047 Uncharacterized protei 22.1 2.2E+02 0.0047 25.8 5.4 48 44-94 82-129 (258)
209 TIGR03413 GSH_gloB hydroxyacyl 21.7 1.5E+02 0.0032 26.9 4.5 45 48-94 120-167 (248)
210 PRK06683 hypothetical protein; 21.7 3.4E+02 0.0073 20.2 5.7 42 37-88 19-60 (82)
211 TIGR00162 conserved hypothetic 21.6 2.1E+02 0.0045 24.9 5.2 43 45-90 14-56 (188)
212 PF07451 SpoVAD: Stage V sporu 21.6 81 0.0017 29.9 2.7 36 45-92 72-107 (329)
213 PLN02605 monogalactosyldiacylg 21.4 2.2E+02 0.0047 27.3 5.9 49 36-91 91-139 (382)
214 KOG3167 Box H/ACA snoRNP compo 21.4 1.5E+02 0.0032 24.6 3.8 41 45-94 75-115 (153)
215 cd01841 NnaC_like NnaC (CMP-Ne 21.1 4E+02 0.0088 21.8 6.9 51 35-87 41-96 (174)
216 PRK09482 flap endonuclease-lik 21.0 3.5E+02 0.0076 24.9 6.8 57 34-90 35-106 (256)
217 PRK03011 butyrate kinase; Prov 21.0 2.8E+02 0.0061 26.8 6.5 41 45-94 295-335 (358)
218 PRK13601 putative L7Ae-like ri 20.9 3.3E+02 0.0071 20.3 5.4 41 37-87 16-56 (82)
219 KOG1344 Predicted histone deac 20.3 3.4E+02 0.0073 24.8 6.2 52 36-87 239-297 (324)
220 CHL00073 chlN photochlorophyll 20.3 2.5E+02 0.0053 28.3 6.0 77 4-90 60-137 (457)
221 COG2382 Fes Enterochelin ester 20.2 1.3E+02 0.0028 28.4 3.8 41 48-95 241-283 (299)
222 COG0054 RibH Riboflavin syntha 20.2 2.9E+02 0.0063 23.3 5.5 55 39-93 65-121 (152)
223 COG3426 Butyrate kinase [Energ 20.2 1.1E+02 0.0024 28.8 3.2 43 44-95 295-337 (358)
224 PRK13738 conjugal transfer pil 20.2 1.3E+02 0.0028 26.8 3.7 23 179-209 121-143 (209)
225 TIGR00215 lpxB lipid-A-disacch 20.1 2.7E+02 0.0058 27.0 6.2 38 38-87 82-119 (385)
226 TIGR03191 benz_CoA_bzdO benzoy 20.1 3.6E+02 0.0079 26.7 7.2 56 32-93 348-403 (430)
No 1
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=100.00 E-value=6.6e-54 Score=391.16 Aligned_cols=297 Identities=37% Similarity=0.648 Sum_probs=242.5
Q ss_pred CCCCCeEEEEEecCCCCcC---CCCCCCCCC-----ChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHH
Q 039188 2 RAGAPFKIVLFADLHFGES---AWTDWGPLQ-----DVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQA 73 (341)
Q Consensus 2 ~~~~~~~i~~isDlH~~~~---~~~~~~~~~-----~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~ 73 (341)
+++|+|||+|+||+|++.. .+.++.|.+ |.+|...+.++|+.++|||||+|||++++.+.. ++...+.++
T Consensus 49 ~~~g~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~sE~PDlVVfTGD~i~g~~t~--Da~~sl~kA 126 (379)
T KOG1432|consen 49 REDGTFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLASEKPDLVVFTGDNIFGHSTQ--DAATSLMKA 126 (379)
T ss_pred cCCCceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhccCCCEEEEeCCcccccccH--hHHHHHHHH
Confidence 5789999999999999987 455555544 889999999999999999999999999986543 355567899
Q ss_pred HHHHHhCCCCEEEEcCCCCCCCccccccccCCCCCCcccCCCCCCCCCCCccccccCCCchHHHhHHhhhccccccccCC
Q 039188 74 ISPTRARGIPWASVFGNHDDAAFEWPLEWLSSPGIPQLRCPTEANSSYSGEEECDFRGTPHLELMKKEIDHNVLSHSKKG 153 (341)
Q Consensus 74 ~~~l~~~~iP~~~i~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~r~~~~~~~~~~~~~s~~~~~ 153 (341)
++|+.+.+|||++++||||...+ +.|.++|+. +...+|+++...
T Consensus 127 vaP~I~~~IPwA~~lGNHDdes~-----------------------------------ltr~ql~~~-i~~lP~s~~~v~ 170 (379)
T KOG1432|consen 127 VAPAIDRKIPWAAVLGNHDDESD-----------------------------------LTRLQLMKF-ISKLPYSLSQVN 170 (379)
T ss_pred hhhHhhcCCCeEEEecccccccc-----------------------------------cCHHHHHHH-HhcCCCccccCC
Confidence 99999999999999999999862 357777764 556678888776
Q ss_pred CCCC----CCCccceEEEeecCCCCC---CceEEEEEEeCCCCCC-------CCCCCHHHHHHHHHHhhhh----CCCCC
Q 039188 154 PKDL----WPSISNYVLNVSSSHDPN---IAVAYLYFLDSGGGSY-------PQVISSEQAEWFLHKAQEI----NPDSR 215 (341)
Q Consensus 154 p~~~----~~g~~~y~l~~~~~~~~~---~~~~~l~~LDS~~~~~-------~~~i~~~Ql~WL~~~L~~~----~~~~~ 215 (341)
|.+- ..|.+||.+.+.+.-++. .+...+|||||+.+.. .+||..+|++||..+..+. .+-..
T Consensus 171 p~dg~~~~~~g~gnyn~~i~~~~ds~~~~~sv~~lyfld~~~~~s~~~~~~~Ydwik~sq~~wl~~~~~~~~~~~~~~~P 250 (379)
T KOG1432|consen 171 PPDGHMYIIDGFGNYNLQIEGAIDSELENKSVFNLYFLDSSSYTSVPPLLPGYDWIKESQLEWLSDTSKEFKEPNSKYNP 250 (379)
T ss_pred CcccceeeeecccceEEEeccCCCcccccCceeeEEEEecCCcccccccccCccchhhhhHHHHhhhhhhhhcccCccCC
Confidence 5421 367899999998654332 3478899999986431 3789999999999998431 11123
Q ss_pred CCcEEEEecCchhhhhhcCCCCCCCCccCccCCcccchhhccchHHHHHHcCCCceEEEeccccCCCcccccCC-eEEEe
Q 039188 216 VPEIVFWHIPSKAYEKVAPKSAIERPCVGSINKESVAAQEAEMGIMDILVNRSSVKAVFAGHNHGLDWCCPYQR-LWLCY 294 (341)
Q Consensus 216 ~~~ivf~H~Pl~~~~~~~~~~~~~~~~~g~~n~e~~~~~~~~~~~~~~l~~~~~V~~v~~GH~H~n~~~~~~~g-i~l~~ 294 (341)
.|.|+|+|+|++|+...+.+ .+..| .+.|.++++..+.+++..|.++.+||+|||||+|.||||+.++| +++||
T Consensus 251 ~p~La~~HIP~~E~~~~~~~----tp~~g-~~~E~~~~~~~~sg~~~~L~~r~~Vk~vf~GHdHvNDfC~~~k~~~wlCy 325 (379)
T KOG1432|consen 251 QPGLAFFHIPLPEFLELESK----TPLIG-VFQEGVSASKHNSGFLTTLVNRGNVKGVFCGHDHVNDFCGELKGELWLCY 325 (379)
T ss_pred CCceEEEEcccHHHhhccCC----Ccccc-eeeccccccccccHHHHHHHhccCcceEEeccccccceecccCCeEEEEe
Confidence 48999999999999877532 23334 46789999999999999999899999999999999999999999 99999
Q ss_pred ecCccCCCCC--CCCCceEEEEEecCCCceeEEEEccCCcE---eeeeeecC
Q 039188 295 ARHSGYGGYG--DWARGARILEITEKPFSLKSWIRMEDGAV---HSQVTLTT 341 (341)
Q Consensus 295 g~~tg~~~~~--~~~~g~Rii~l~~~~~~~~t~~r~~~g~~---~~~~~~~~ 341 (341)
|+++||++|| .|+|++||+|++..+.+|+||||++++.. =.|+++++
T Consensus 326 gGgaGyggYg~~gw~Rr~Rv~e~d~~~~~IkTWKRl~d~~~~~~D~q~l~d~ 377 (379)
T KOG1432|consen 326 GGGAGYGGYGIGGWERRARVFELDLNKDRIKTWKRLDDKPLSVIDYQLLYDG 377 (379)
T ss_pred cCCCccCCcCcCCcccceEEEEccccccccceeeecCCCCcceeeeEEEecc
Confidence 9999999998 59999999999999899999999999843 55776654
No 2
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=100.00 E-value=3.8e-33 Score=259.37 Aligned_cols=240 Identities=20% Similarity=0.190 Sum_probs=162.1
Q ss_pred CCCCeEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHh---h--hCCCEEEEeCcccCCCccchhhHHHHHHHHHHHH
Q 039188 3 AGAPFKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLD---D--EAPGLVIYLGDVITANNIAIANASLYWDQAISPT 77 (341)
Q Consensus 3 ~~~~~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~---~--~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l 77 (341)
++++|||+||||+|+...... ...+.++.+.++++++ + .+||+||+|||++++.. .+.++.+.+.|
T Consensus 11 ~~~~~~i~~iSD~Hl~~~~~~---~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~------~~~~~~~~~~l 81 (275)
T PRK11148 11 GEARVRILQITDTHLFADEHE---TLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHS------SEAYQHFAEGI 81 (275)
T ss_pred CCCCEEEEEEcCcccCCCCCC---ceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCC------HHHHHHHHHHH
Confidence 346799999999998653211 1112345555555554 2 36999999999999765 23346777788
Q ss_pred HhCCCCEEEEcCCCCCCCccccccccCCCCCCcccCCCCCCCCCCCccccccCCCchHHHhHHhhhccccccccCCCCCC
Q 039188 78 RARGIPWASVFGNHDDAAFEWPLEWLSSPGIPQLRCPTEANSSYSGEEECDFRGTPHLELMKKEIDHNVLSHSKKGPKDL 157 (341)
Q Consensus 78 ~~~~iP~~~i~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~r~~~~~~~~~~~~~s~~~~~p~~~ 157 (341)
.++++|+++++||||.... + .+.+. ... ..+
T Consensus 82 ~~l~~Pv~~v~GNHD~~~~--------------------------------~-----~~~~~----~~~-----~~~--- 112 (275)
T PRK11148 82 APLRKPCVWLPGNHDFQPA--------------------------------M-----YSALQ----DAG-----ISP--- 112 (275)
T ss_pred hhcCCcEEEeCCCCCChHH--------------------------------H-----HHHHh----hcC-----CCc---
Confidence 8889999999999998630 0 01111 000 000
Q ss_pred CCCccceEEEeecCCCCCCceEEEEEEeCCC-CCCCCCCCHHHHHHHHHHhhhhCCCCCCCcEEEEecCchhhhhhcCCC
Q 039188 158 WPSISNYVLNVSSSHDPNIAVAYLYFLDSGG-GSYPQVISSEQAEWFLHKAQEINPDSRVPEIVFWHIPSKAYEKVAPKS 236 (341)
Q Consensus 158 ~~g~~~y~l~~~~~~~~~~~~~~l~~LDS~~-~~~~~~i~~~Ql~WL~~~L~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~ 236 (341)
.+.+.. ...+++++|||.. +...|+|+++|++||+++|+++++ .+.+||+||||......+.
T Consensus 113 -----~~~~~~-------~~~~~~i~Lds~~~g~~~G~l~~~ql~wL~~~L~~~~~---~~~vv~~hH~P~~~~~~~~-- 175 (275)
T PRK11148 113 -----AKHVLI-------GEHWQILLLDSQVFGVPHGELSEYQLEWLERKLADAPE---RHTLVLLHHHPLPAGCAWL-- 175 (275)
T ss_pred -----cceEEe-------cCCEEEEEecCCCCCCcCCEeCHHHHHHHHHHHhhCCC---CCeEEEEcCCCCCCCcchh--
Confidence 111211 1348899999975 334578999999999999998753 4678888876643322110
Q ss_pred CCCCCccCccCCcccchhhccchHHHHHHcCCCceEEEeccccCCCcccccCCeEEEeecCccCC--C------CCCCCC
Q 039188 237 AIERPCVGSINKESVAAQEAEMGIMDILVNRSSVKAVFAGHNHGLDWCCPYQRLWLCYARHSGYG--G------YGDWAR 308 (341)
Q Consensus 237 ~~~~~~~g~~n~e~~~~~~~~~~~~~~l~~~~~V~~v~~GH~H~n~~~~~~~gi~l~~g~~tg~~--~------~~~~~~ 308 (341)
+. .+..| ..+|+++|.++++|+++||||+|.+ +...++||.++.+|++|++ . +...++
T Consensus 176 --d~--~~l~n---------~~~l~~ll~~~~~v~~vl~GH~H~~-~~~~~~gi~~~~~ps~~~q~~~~~~~~~~~~~~~ 241 (275)
T PRK11148 176 --DQ--HSLRN---------AHELAEVLAKFPNVKAILCGHIHQE-LDLDWNGRRLLATPSTCVQFKPHCTNFTLDTVAP 241 (275)
T ss_pred --hc--cCCCC---------HHHHHHHHhcCCCceEEEecccChH-HhceECCEEEEEcCCCcCCcCCCCCccccccCCC
Confidence 00 01112 2578999988889999999999984 5677899999999999974 1 224578
Q ss_pred ceEEEEEecCCCceeE-EEEccCCc
Q 039188 309 GARILEITEKPFSLKS-WIRMEDGA 332 (341)
Q Consensus 309 g~Rii~l~~~~~~~~t-~~r~~~g~ 332 (341)
|+|+++|++++ ++.| ++|++++.
T Consensus 242 g~~~~~l~~~g-~~~~~~~~~~~~~ 265 (275)
T PRK11148 242 GWRELELHADG-SLETEVHRLADTE 265 (275)
T ss_pred cEEEEEEcCCC-cEEEEEEEcCCCC
Confidence 99999998775 4555 68988754
No 3
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=100.00 E-value=4.1e-33 Score=247.06 Aligned_cols=197 Identities=42% Similarity=0.775 Sum_probs=154.4
Q ss_pred CCeEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCE
Q 039188 5 APFKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPW 84 (341)
Q Consensus 5 ~~~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~ 84 (341)
++|||+||||+|++.......+...+..+.+.++++++..+||+||+|||++++..... ++...+.++++.+.+.++|+
T Consensus 1 ~~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~~~-~~~~~~~~~~~~l~~~~~p~ 79 (199)
T cd07383 1 GKFKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENTND-NSTSALDKAVSPMIDRKIPW 79 (199)
T ss_pred CceEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCCch-HHHHHHHHHHHHHHHcCCCE
Confidence 57999999999998864221112334567888988898899999999999999766421 13456778888888889999
Q ss_pred EEEcCCCCCCCccccccccCCCCCCcccCCCCCCCCCCCccccccCCCchHHHhHHhhhccccccccCCCCCCCCCccce
Q 039188 85 ASVFGNHDDAAFEWPLEWLSSPGIPQLRCPTEANSSYSGEEECDFRGTPHLELMKKEIDHNVLSHSKKGPKDLWPSISNY 164 (341)
Q Consensus 85 ~~i~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~r~~~~~~~~~~~~~s~~~~~p~~~~~g~~~y 164 (341)
++++||||..
T Consensus 80 ~~~~GNHD~~---------------------------------------------------------------------- 89 (199)
T cd07383 80 AATFGNHDGY---------------------------------------------------------------------- 89 (199)
T ss_pred EEECccCCCC----------------------------------------------------------------------
Confidence 9999999932
Q ss_pred EEEeecCCCCCCceEEEEEEeCCCCCCCCCCCHHHHHHHHHHhhhhCC--CCCCCcEEEEecCchhhhhhcCCCCCCCCc
Q 039188 165 VLNVSSSHDPNIAVAYLYFLDSGGGSYPQVISSEQAEWFLHKAQEINP--DSRVPEIVFWHIPSKAYEKVAPKSAIERPC 242 (341)
Q Consensus 165 ~l~~~~~~~~~~~~~~l~~LDS~~~~~~~~i~~~Ql~WL~~~L~~~~~--~~~~~~ivf~H~Pl~~~~~~~~~~~~~~~~ 242 (341)
++++++|++||+++|+++.. ....|.++|+|||+++....+.. ...+
T Consensus 90 ----------------------------g~l~~~ql~wL~~~l~~~~~~~~~~~~~l~f~H~P~~~~~~~~~~---~~~~ 138 (199)
T cd07383 90 ----------------------------DWIRPSQIEWFKETSAALKKKYGKPIPSLAFFHIPLPEYREVWEG---KGKV 138 (199)
T ss_pred ----------------------------CCCCHHHHHHHHHHHHHHhhccCCCCcceEEEecChHHHHhhhcc---cCCC
Confidence 13678999999999999741 23468999999999988766531 0112
Q ss_pred cCccCCcccchhhccchHHHHHHcCCCceEEEeccccCCCcccccCCeEEEeecCccCCCCC
Q 039188 243 VGSINKESVAAQEAEMGIMDILVNRSSVKAVFAGHNHGLDWCCPYQRLWLCYARHSGYGGYG 304 (341)
Q Consensus 243 ~g~~n~e~~~~~~~~~~~~~~l~~~~~V~~v~~GH~H~n~~~~~~~gi~l~~g~~tg~~~~~ 304 (341)
.|. +.|...+...+.++++.+.+.++|++|||||+|.++++..++||++|+|+.+||++|+
T Consensus 139 ~g~-~~d~~~~~~~~~~~~~~~~~~~~v~~v~~GH~H~~~~~~~~~~i~l~~g~~~g~~~y~ 199 (199)
T cd07383 139 PGI-NNEKVCCPKINSGLFKALLERGDVKGVFCGHDHGNDFCGRYNGIWLCYGRGTGYGGYG 199 (199)
T ss_pred Ccc-CCcccCCCcCCcHHHHHHHHcCCeEEEEeCCCCCcceecccCCEEEeCCCCCCCCCCC
Confidence 233 3354556667789999999889999999999999999999999999999999999886
No 4
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.97 E-value=3.2e-29 Score=231.25 Aligned_cols=242 Identities=21% Similarity=0.217 Sum_probs=154.9
Q ss_pred CCCeEEEEEecCCCCcCCCC-CCCCCCChhHHHHHHHH---Hhhh--CCCEEEEeCcccCCCccchhhHHHHHHHHHHHH
Q 039188 4 GAPFKIVLFADLHFGESAWT-DWGPLQDVNSSRVMSTV---LDDE--APGLVIYLGDVITANNIAIANASLYWDQAISPT 77 (341)
Q Consensus 4 ~~~~~i~~isDlH~~~~~~~-~~~~~~~~~~~~~l~~~---l~~~--~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l 77 (341)
+++|+|+|+||+|++..... ..+......++..++++ +++. +||+||++|||+++...... ....++.+.+.+
T Consensus 2 ~~~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~-~~~~~~~~~~~~ 80 (262)
T cd07395 2 SGPFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDEL-RERQVSDLKDVL 80 (262)
T ss_pred CCCEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhh-HHHHHHHHHHHH
Confidence 57899999999999974311 01111122333344444 4444 89999999999997653211 112244555555
Q ss_pred HhC--CCCEEEEcCCCCCCCccccccccCCCCCCcccCCCCCCCCCCCccccccCCCchHHHhHHhhhccccccccCCCC
Q 039188 78 RAR--GIPWASVFGNHDDAAFEWPLEWLSSPGIPQLRCPTEANSSYSGEEECDFRGTPHLELMKKEIDHNVLSHSKKGPK 155 (341)
Q Consensus 78 ~~~--~iP~~~i~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~r~~~~~~~~~~~~~s~~~~~p~ 155 (341)
.+. ++|+++++||||.... +..+.++.... .
T Consensus 81 ~~~~~~vp~~~i~GNHD~~~~------------------------------------~~~~~~~~f~~-------~---- 113 (262)
T cd07395 81 SLLDPDIPLVCVCGNHDVGNT------------------------------------PTEESIKDYRD-------V---- 113 (262)
T ss_pred hhccCCCcEEEeCCCCCCCCC------------------------------------CChhHHHHHHH-------H----
Confidence 554 7999999999998631 00001111000 0
Q ss_pred CCCCCccceEEEeecCCCCCCceEEEEEEeCCCCC---CCCCCCHHHHHHHHHHhhhhCCCCCCCcEEEEecCchhhhhh
Q 039188 156 DLWPSISNYVLNVSSSHDPNIAVAYLYFLDSGGGS---YPQVISSEQAEWFLHKAQEINPDSRVPEIVFWHIPSKAYEKV 232 (341)
Q Consensus 156 ~~~~g~~~y~l~~~~~~~~~~~~~~l~~LDS~~~~---~~~~i~~~Ql~WL~~~L~~~~~~~~~~~ivf~H~Pl~~~~~~ 232 (341)
.+..+|.+.. ..+++++|||.... ..+.+..+|++||+++|+++++...+++|||+|||+......
T Consensus 114 ---~g~~~y~~~~--------~~~~~i~lds~~~~~~~~~~~~~~~ql~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~ 182 (262)
T cd07395 114 ---FGDDYFSFWV--------GGVFFIVLNSQLFFDPSEVPELAQAQDVWLEEQLEIAKESDCKHVIVFQHIPWFLEDPD 182 (262)
T ss_pred ---hCCcceEEEE--------CCEEEEEeccccccCccccccchHHHHHHHHHHHHHHHhccCCcEEEEECcCCccCCCC
Confidence 1223455433 24789999996421 113588999999999999985323468999999999743221
Q ss_pred cCCCCCCCCccCccCCcccchhhccchHHHHHHcCCCceEEEeccccCCCcccccCCeEEEeecCccCCCCCCCCCceEE
Q 039188 233 APKSAIERPCVGSINKESVAAQEAEMGIMDILVNRSSVKAVFAGHNHGLDWCCPYQRLWLCYARHSGYGGYGDWARGARI 312 (341)
Q Consensus 233 ~~~~~~~~~~~g~~n~e~~~~~~~~~~~~~~l~~~~~V~~v~~GH~H~n~~~~~~~gi~l~~g~~tg~~~~~~~~~g~Ri 312 (341)
... ..++. ......++.++|.+ ++|+++||||+|.+.. ..++|+.++.++++|+ +++...+|+|+
T Consensus 183 ~~~--------~~~~~----~~~~~~~l~~ll~~-~~V~~v~~GH~H~~~~-~~~~g~~~~~~~~~~~-~~~~~~~g~~~ 247 (262)
T cd07395 183 EED--------SYFNI----PKSVRKPLLDKFKK-AGVKAVFSGHYHRNAG-GRYGGLEMVVTSAIGA-QLGNDKSGLRI 247 (262)
T ss_pred CCc--------ccCCc----CHHHHHHHHHHHHh-cCceEEEECccccCCc-eEECCEEEEEcCceec-ccCCCCCCcEE
Confidence 100 00110 01123567777765 5999999999999876 5689999999999996 56667899999
Q ss_pred EEEecCC
Q 039188 313 LEITEKP 319 (341)
Q Consensus 313 i~l~~~~ 319 (341)
+++++++
T Consensus 248 ~~v~~~~ 254 (262)
T cd07395 248 VKVTEDK 254 (262)
T ss_pred EEECCCc
Confidence 9998763
No 5
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.96 E-value=3.8e-28 Score=224.87 Aligned_cols=228 Identities=21% Similarity=0.237 Sum_probs=155.9
Q ss_pred eEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHH---HhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCC
Q 039188 7 FKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTV---LDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIP 83 (341)
Q Consensus 7 ~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~---l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP 83 (341)
|||+|+||+|++...... .....++.+.++++ +++.+||+||++||++++.... ..+.++.+.+.+.++++|
T Consensus 1 ~r~~~iSD~H~~~~~~~~--~~~~~~~~~~l~~~i~~i~~~~~d~vv~~GDlv~~~~~~---~~~~~~~~~~~l~~l~~p 75 (267)
T cd07396 1 FRFGIIADIQYADEDDTR--PRYYRNSLEKLEEAVEEWNRESLDFVVQLGDIIDGDNAR---AEEALDAVLAILDRLKGP 75 (267)
T ss_pred CeEEEEeccccccCCCcc--cchHHHhHHHHHHHHHHHHcCCCCEEEECCCeecCCCch---HHHHHHHHHHHHHhcCCC
Confidence 799999999987643110 01122334444444 4456799999999999876531 234567888888889999
Q ss_pred EEEEcCCCCCCCccccccccCCCCCCcccCCCCCCCCCCCccccccCCCchHHHhHHhhhccccccccCCCCCCCCCccc
Q 039188 84 WASVFGNHDDAAFEWPLEWLSSPGIPQLRCPTEANSSYSGEEECDFRGTPHLELMKKEIDHNVLSHSKKGPKDLWPSISN 163 (341)
Q Consensus 84 ~~~i~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~r~~~~~~~~~~~~~s~~~~~p~~~~~g~~~ 163 (341)
+++++||||..... .. .+. . .. ... .+..+
T Consensus 76 ~~~v~GNHD~~~~~------------------------------------~~-~~~--~--~~--~~~-------~~~~y 105 (267)
T cd07396 76 VHHVLGNHDLYNPS------------------------------------RE-YLL--L--YT--LLG-------LGAPY 105 (267)
T ss_pred EEEecCcccccccc------------------------------------Hh-hhh--c--cc--ccC-------CCCce
Confidence 99999999997410 00 000 0 00 000 12234
Q ss_pred eEEEeecCCCCCCceEEEEEEeCCCCC-------------------------------CCCCCCHHHHHHHHHHhhhhCC
Q 039188 164 YVLNVSSSHDPNIAVAYLYFLDSGGGS-------------------------------YPQVISSEQAEWFLHKAQEINP 212 (341)
Q Consensus 164 y~l~~~~~~~~~~~~~~l~~LDS~~~~-------------------------------~~~~i~~~Ql~WL~~~L~~~~~ 212 (341)
|.+.. ..+++++|||...+ +.|+++++|++||+++|+++++
T Consensus 106 ysf~~--------~~~~~i~lds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~Ql~WL~~~L~~~~~ 177 (267)
T cd07396 106 YSFSP--------GGIRFIVLDGYDISALGRPEDTPKAENADDNSNLGLYLSEPRFVDWNGGIGEEQLQWLRNELQEADA 177 (267)
T ss_pred EEEec--------CCcEEEEEeCCccccccCCCCChhhhhHHHhchhhhhccCccceeccCcCCHHHHHHHHHHHHHHHh
Confidence 55533 24789999985311 2467999999999999998753
Q ss_pred CCCCCcEEEEecCchhhhhhcCCCCCCCCccCccCCcccchhhccchHHHHHHcCCCceEEEeccccCCCcccccCCeEE
Q 039188 213 DSRVPEIVFWHIPSKAYEKVAPKSAIERPCVGSINKESVAAQEAEMGIMDILVNRSSVKAVFAGHNHGLDWCCPYQRLWL 292 (341)
Q Consensus 213 ~~~~~~ivf~H~Pl~~~~~~~~~~~~~~~~~g~~n~e~~~~~~~~~~~~~~l~~~~~V~~v~~GH~H~n~~~~~~~gi~l 292 (341)
...+++||+|||+..... .+. ...+| ...+.++|.++++|+++||||+|.+.. ..++||.+
T Consensus 178 -~~~~viV~~Hhp~~~~~~-~~~-------~~~~~---------~~~~~~ll~~~~~V~~v~~GH~H~~~~-~~~~gi~~ 238 (267)
T cd07396 178 -NGEKVIIFSHFPLHPEST-SPH-------GLLWN---------HEEVLSILRAYGCVKACISGHDHEGGY-AQRHGIHF 238 (267)
T ss_pred -cCCeEEEEEeccCCCCCC-Ccc-------ccccC---------HHHHHHHHHhCCCEEEEEcCCcCCCCc-cccCCeeE
Confidence 235799999999864321 100 01122 246788887768999999999999864 46899999
Q ss_pred EeecCccCCCCCCCCCceEEEEEecC
Q 039188 293 CYARHSGYGGYGDWARGARILEITEK 318 (341)
Q Consensus 293 ~~g~~tg~~~~~~~~~g~Rii~l~~~ 318 (341)
..+|+++++ .+..+-+-+|+++++
T Consensus 239 ~~~~a~~~~--~~~~~~~~~~~~~~~ 262 (267)
T cd07396 239 LTLEGMVET--PPESNAFGVVIVYED 262 (267)
T ss_pred EEechhhcC--CCCCCceEEEEEeCC
Confidence 999999987 777788889999986
No 6
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.96 E-value=1.2e-27 Score=217.42 Aligned_cols=228 Identities=21% Similarity=0.243 Sum_probs=150.7
Q ss_pred EEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhh--CCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEE
Q 039188 8 KIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDE--APGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWA 85 (341)
Q Consensus 8 ~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~ 85 (341)
||+|+||+|++...............++.+.+.+++. +||+||++||+++.... ..++.+.+.+.++++|++
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~~------~~~~~~~~~l~~~~~p~~ 74 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGSP------ESYERLRELLAALPIPVY 74 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCCH------HHHHHHHHHHhhcCCCEE
Confidence 6999999999864311000001112233333334454 89999999999997652 234566677777899999
Q ss_pred EEcCCCCCCCccccccccCCCCCCcccCCCCCCCCCCCccccccCCCchHHHhHHhhhccccccccCCCCCCCCCccceE
Q 039188 86 SVFGNHDDAAFEWPLEWLSSPGIPQLRCPTEANSSYSGEEECDFRGTPHLELMKKEIDHNVLSHSKKGPKDLWPSISNYV 165 (341)
Q Consensus 86 ~i~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~r~~~~~~~~~~~~~s~~~~~p~~~~~g~~~y~ 165 (341)
+|+||||.... +...+..... ..+..+|.
T Consensus 75 ~v~GNHD~~~~-----------------------------------------~~~~~~~~~~----------~~~~~~~~ 103 (240)
T cd07402 75 LLPGNHDDRAA-----------------------------------------MRAVFPELPP----------APGFVQYV 103 (240)
T ss_pred EeCCCCCCHHH-----------------------------------------HHHhhccccc----------ccccccee
Confidence 99999998630 0000000000 01223455
Q ss_pred EEeecCCCCCCceEEEEEEeCCCC-CCCCCCCHHHHHHHHHHhhhhCCCCCCCcEEEEecCchhhhhhcCCCCCCCCccC
Q 039188 166 LNVSSSHDPNIAVAYLYFLDSGGG-SYPQVISSEQAEWFLHKAQEINPDSRVPEIVFWHIPSKAYEKVAPKSAIERPCVG 244 (341)
Q Consensus 166 l~~~~~~~~~~~~~~l~~LDS~~~-~~~~~i~~~Ql~WL~~~L~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~~~~~~g 244 (341)
+.+ ..+++++|||... ...++++++|++||+++|++.+ ..++|+++||||......+. +
T Consensus 104 ~~~--------~~~~~i~lds~~~~~~~~~~~~~ql~wL~~~L~~~~---~~~~il~~H~pp~~~~~~~~----~----- 163 (240)
T cd07402 104 VDL--------GGWRLILLDSSVPGQHGGELCAAQLDWLEAALAEAP---DKPTLVFLHHPPFPVGIAWM----D----- 163 (240)
T ss_pred Eec--------CCEEEEEEeCCCCCCcCCEECHHHHHHHHHHHHhCC---CCCEEEEECCCCccCCchhh----h-----
Confidence 543 3489999999753 2346799999999999999875 35899999999964321110 0
Q ss_pred ccCCcccchhhccchHHHHHHcCCCceEEEeccccCCCcccccCCeEEEeecCccCC-----C---CCCCCCceEEEEEe
Q 039188 245 SINKESVAAQEAEMGIMDILVNRSSVKAVFAGHNHGLDWCCPYQRLWLCYARHSGYG-----G---YGDWARGARILEIT 316 (341)
Q Consensus 245 ~~n~e~~~~~~~~~~~~~~l~~~~~V~~v~~GH~H~n~~~~~~~gi~l~~g~~tg~~-----~---~~~~~~g~Rii~l~ 316 (341)
.+.. ....++++++.++++|+++||||+|.. .....+|+.+++++++|++ . +.+..+|++-+.|.
T Consensus 164 ~~~~------~~~~~~~~~l~~~~~v~~v~~GH~H~~-~~~~~~g~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (240)
T cd07402 164 AIGL------RNAEALAAVLARHPNVRAILCGHVHRP-IDGSWGGIPLLTAPSTCHQFAPDLDDFALDALAPGYRALSLH 236 (240)
T ss_pred hhhC------CCHHHHHHHHhcCCCeeEEEECCcCch-HHeEECCEEEEEcCcceeeecCCCCcccccccCCCCcEEEEe
Confidence 0000 012578888887779999999999985 4677899999999999973 1 22445799999998
Q ss_pred cCC
Q 039188 317 EKP 319 (341)
Q Consensus 317 ~~~ 319 (341)
+++
T Consensus 237 ~~~ 239 (240)
T cd07402 237 EDG 239 (240)
T ss_pred cCC
Confidence 753
No 7
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=99.92 E-value=1e-22 Score=190.70 Aligned_cols=262 Identities=18% Similarity=0.228 Sum_probs=153.5
Q ss_pred CCCeEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCC
Q 039188 4 GAPFKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIP 83 (341)
Q Consensus 4 ~~~~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP 83 (341)
+.+|||++++|+|.+.. ....+++.+.+. ..+|||||++||++++......+....+.+.++++. ..+|
T Consensus 2 ~~~~~f~v~gD~~~~~~--------~~~~~~~~l~~~--~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~~-~~~P 70 (294)
T cd00839 2 DTPFKFAVFGDMGQNTN--------NSTNTLDHLEKE--LGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEPLA-SYVP 70 (294)
T ss_pred CCcEEEEEEEECCCCCC--------CcHHHHHHHHhc--cCCccEEEEcCchhhhcCCccchhHHHHHHHHHHHH-hcCC
Confidence 56899999999998521 122343433322 478999999999997544211011222344444443 3799
Q ss_pred EEEEcCCCCCCCccccccccCCCCCCcccCCCCCCCCCCCccccccCCCchHHHhHHhhhccccccccCCCCCCCCCccc
Q 039188 84 WASVFGNHDDAAFEWPLEWLSSPGIPQLRCPTEANSSYSGEEECDFRGTPHLELMKKEIDHNVLSHSKKGPKDLWPSISN 163 (341)
Q Consensus 84 ~~~i~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~r~~~~~~~~~~~~~s~~~~~p~~~~~g~~~ 163 (341)
+++++||||..... ...... .+ ..+. . ....++. ..+...
T Consensus 71 ~~~~~GNHD~~~~~--------~~~~~~----------------~~--~~~~-~-----------~~~~~~~--~~~~~~ 110 (294)
T cd00839 71 YMVTPGNHEADYNF--------SFYKIK----------------AF--FPRF-R-----------FPHSPSG--STSNLW 110 (294)
T ss_pred cEEcCcccccccCC--------CCcccc----------------cc--cccc-c-----------ccCCCCC--CCCCce
Confidence 99999999997410 000000 00 0000 0 0000000 012244
Q ss_pred eEEEeecCCCCCCceEEEEEEeCCCCCCCCCCCHHHHHHHHHHhhhhCCCCCCCcEEEEecCchhhhhhcCCCCCCCCcc
Q 039188 164 YVLNVSSSHDPNIAVAYLYFLDSGGGSYPQVISSEQAEWFLHKAQEINPDSRVPEIVFWHIPSKAYEKVAPKSAIERPCV 243 (341)
Q Consensus 164 y~l~~~~~~~~~~~~~~l~~LDS~~~~~~~~i~~~Ql~WL~~~L~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~~~~~~ 243 (341)
|.+.. ..+++++|||......+.+..+|++||++.|++.++.....+||++|||+........
T Consensus 111 Ysf~~--------g~v~fi~Lds~~~~~~~~~~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~--------- 173 (294)
T cd00839 111 YSFDV--------GPVHFVSLSTEVDFYGDGPGSPQYDWLEADLAKVDRSKTPWIIVMGHRPMYCSNTDHD--------- 173 (294)
T ss_pred EEEee--------CCEEEEEEecccccccCCCCcHHHHHHHHHHHHhcccCCCeEEEEeccCcEecCcccc---------
Confidence 66654 2489999999754323568999999999999987643223589999999964322110
Q ss_pred CccCCcccchhhccchHHHHHHcCCCceEEEeccccCCCcccc---------------cCCeEEEeecCccCCCC-----
Q 039188 244 GSINKESVAAQEAEMGIMDILVNRSSVKAVFAGHNHGLDWCCP---------------YQRLWLCYARHSGYGGY----- 303 (341)
Q Consensus 244 g~~n~e~~~~~~~~~~~~~~l~~~~~V~~v~~GH~H~n~~~~~---------------~~gi~l~~g~~tg~~~~----- 303 (341)
...........+.++|.+ .+|.++||||+|....... .+|+..+..++.|...+
T Consensus 174 -----~~~~~~~~~~~l~~ll~~-~~v~~vl~GH~H~y~r~~p~~~~~~~~~~~~~~~~~g~~yiv~G~~G~~~~~~~~~ 247 (294)
T cd00839 174 -----DCIEGEKMRAALEDLFYK-YGVDLVLSGHVHAYERTCPVYNGTVVGDCNPYSNPKGPVHIVIGAGGNDEGLDPFS 247 (294)
T ss_pred -----ccchhHHHHHHHHHHHHH-hCCCEEEEccceeeEeechhhCCEeccccccccCCCccEEEEECCCccccCcCccc
Confidence 000001112455666655 5999999999998643221 25666666555552111
Q ss_pred ---------CCCCCceEEEEEecCCCcee-EEEEccCCcEeeeeeec
Q 039188 304 ---------GDWARGARILEITEKPFSLK-SWIRMEDGAVHSQVTLT 340 (341)
Q Consensus 304 ---------~~~~~g~Rii~l~~~~~~~~-t~~r~~~g~~~~~~~~~ 340 (341)
.....|+-++++..+ ..+. .|++..+|+++++++|.
T Consensus 248 ~~~~~~~~~~~~~~g~~~~~~~~~-t~l~~~~~~~~~g~v~D~f~i~ 293 (294)
T cd00839 248 APPPAWSAFRESDYGFGRLTVHNS-THLHFEWIRNDDGVVIDSFWII 293 (294)
T ss_pred CCCCCceEEEeccCCEEEEEEEec-CeEEEEEEECCCCeEEEEEEEe
Confidence 123578888888754 2443 46888999999999984
No 8
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.91 E-value=2.8e-23 Score=186.15 Aligned_cols=200 Identities=17% Similarity=0.193 Sum_probs=125.3
Q ss_pred eEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEE
Q 039188 7 FKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWAS 86 (341)
Q Consensus 7 ~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~ 86 (341)
|+|+++||+|++.... +......++.+.+.+++.+||+||++||+++..... .....+.++++.|.+.++|+++
T Consensus 1 f~~~~~~D~q~~~~~~----~~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~~--~~~~~~~~~~~~l~~~~~p~~~ 74 (214)
T cd07399 1 FTLAVLPDTQYYTESY----PEVFDAQTDWIVDNAEALNIAFVLHLGDIVDDGDND--AEWEAADKAFARLDKAGIPYSV 74 (214)
T ss_pred CEEEEecCCCcCCcCC----HHHHHHHHHHHHHHHHHcCCCEEEECCCccCCCCCH--HHHHHHHHHHHHHHHcCCcEEE
Confidence 7999999999975421 111122344555555567899999999999976521 1223345666777667899999
Q ss_pred EcCCCCCCCccccccccCCCCCCcccCCCCCCCCCCCccccccCCCchHHHhHHhhhccccccccCCCCCCCCCccceEE
Q 039188 87 VFGNHDDAAFEWPLEWLSSPGIPQLRCPTEANSSYSGEEECDFRGTPHLELMKKEIDHNVLSHSKKGPKDLWPSISNYVL 166 (341)
Q Consensus 87 i~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~r~~~~~~~~~~~~~s~~~~~p~~~~~g~~~y~l 166 (341)
++||||...
T Consensus 75 ~~GNHD~~~----------------------------------------------------------------------- 83 (214)
T cd07399 75 LAGNHDLVL----------------------------------------------------------------------- 83 (214)
T ss_pred ECCCCcchh-----------------------------------------------------------------------
Confidence 999999531
Q ss_pred EeecCCCCCCceEEEEEEeCCCCCCCCCCCHHHHHHHHHHhhhhCCCCCCCcEEEEecCchhhhhhcCCCCCCCCccCcc
Q 039188 167 NVSSSHDPNIAVAYLYFLDSGGGSYPQVISSEQAEWFLHKAQEINPDSRVPEIVFWHIPSKAYEKVAPKSAIERPCVGSI 246 (341)
Q Consensus 167 ~~~~~~~~~~~~~~l~~LDS~~~~~~~~i~~~Ql~WL~~~L~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~~~~~~g~~ 246 (341)
.+||. ++++|++||+++|++.+ .+|+|||+|||+.......+ .. . +
T Consensus 84 ----------------~ld~~-------~~~~ql~WL~~~L~~~~---~~~~iv~~H~p~~~~~~~~~-----~~--~-~ 129 (214)
T cd07399 84 ----------------ALEFG-------PRDEVLQWANEVLKKHP---DRPAILTTHAYLNCDDSRPD-----SI--D-Y 129 (214)
T ss_pred ----------------hCCCC-------CCHHHHHHHHHHHHHCC---CCCEEEEecccccCCCCcCc-----cc--c-c
Confidence 01111 45899999999999864 36899999999963222111 00 0 0
Q ss_pred CCcccchhhccch-HHHHHHcCCCceEEEeccccCCCcccccCCe--------EEEeecCccCCCCCCCCCceEEEEEec
Q 039188 247 NKESVAAQEAEMG-IMDILVNRSSVKAVFAGHNHGLDWCCPYQRL--------WLCYARHSGYGGYGDWARGARILEITE 317 (341)
Q Consensus 247 n~e~~~~~~~~~~-~~~~l~~~~~V~~v~~GH~H~n~~~~~~~gi--------~l~~g~~tg~~~~~~~~~g~Rii~l~~ 317 (341)
. . ....+.+ +.+++.++++|++|||||+|.... ..+.|+ +++.... +.+++. .+.+|++++++
T Consensus 130 ~-~---~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~~-~~~~~~~~~g~~v~~~~~~~q--~~~~~g-~~~~r~~~f~~ 201 (214)
T cd07399 130 D-S---DVNDGQQIWDKLVKKNDNVFMVLSGHVHGAGR-TTLVSVGDAGRTVHQMLADYQ--GEPNGG-NGFLRLLEFDP 201 (214)
T ss_pred c-c---ccccHHHHHHHHHhCCCCEEEEEccccCCCce-EEEcccCCCCCEeeEEeeccc--CCCCCC-cceEEEEEEec
Confidence 0 0 0001233 456666778999999999998653 334322 1111111 112233 57799999998
Q ss_pred CCCceeEE
Q 039188 318 KPFSLKSW 325 (341)
Q Consensus 318 ~~~~~~t~ 325 (341)
+...|..+
T Consensus 202 ~~~~i~~~ 209 (214)
T cd07399 202 DNNKIDVR 209 (214)
T ss_pred CCCEEEEE
Confidence 86666554
No 9
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=99.89 E-value=2e-21 Score=188.44 Aligned_cols=132 Identities=15% Similarity=0.252 Sum_probs=93.3
Q ss_pred CccceEEEeecCCCCCCceEEEEEEeCCC--CCCCCCCCHHHHHHHHHHhhhhCCCCCCCcEEEEecCchhhhhhcCCCC
Q 039188 160 SISNYVLNVSSSHDPNIAVAYLYFLDSGG--GSYPQVISSEQAEWFLHKAQEINPDSRVPEIVFWHIPSKAYEKVAPKSA 237 (341)
Q Consensus 160 g~~~y~l~~~~~~~~~~~~~~l~~LDS~~--~~~~~~i~~~Ql~WL~~~L~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~ 237 (341)
+..+|++.+. ..+++++|||.. +.+.|.|+++|++||+++|++.+ .+++|||+|||+......+.
T Consensus 290 G~~YYSFd~~-------ggvrfIvLDSt~~~G~~~G~L~eeQL~WLeqeLa~a~---~k~VVVf~HHPp~s~g~~~~--- 356 (496)
T TIGR03767 290 GTGYYTFDIA-------GGVRGISMDTTNRAGGDEGSLGQTQFKWIKDTLRASS---DTLFVLFSHHTSWSMVNELT--- 356 (496)
T ss_pred CCceEEEEeE-------CCEEEEEEeCCCcCCCcCCccCHHHHHHHHHHHhcCC---CCCEEEEECCCCcccccccc---
Confidence 5577888743 348999999975 35678899999999999999753 35899999999964322111
Q ss_pred CCCCccCccCCcccchhhccchHHHHHHcCCCceEEEeccccCCCcccccC---------CeEEEeecCccCCCCCCCCC
Q 039188 238 IERPCVGSINKESVAAQEAEMGIMDILVNRSSVKAVFAGHNHGLDWCCPYQ---------RLWLCYARHSGYGGYGDWAR 308 (341)
Q Consensus 238 ~~~~~~g~~n~e~~~~~~~~~~~~~~l~~~~~V~~v~~GH~H~n~~~~~~~---------gi~l~~g~~tg~~~~~~~~~ 308 (341)
+....+ .+.. ...+++++|.++++|+++||||+|.|.. ..+. |++-+.+ +++.+++.
T Consensus 357 -Dp~~pg-~~~~------n~~eLldLL~~ypnV~aVfsGHvH~n~i-~~~~~~~~~~p~~gfweI~T-----aSlvdfPq 422 (496)
T TIGR03767 357 -DPVDPG-EKRH------LGTELVSLLLEHPNVLAWVNGHTHSNKI-TAHRRVEGVGKDKGFWEINT-----ASHIDFPQ 422 (496)
T ss_pred -cccccc-cccc------CHHHHHHHHhcCCCceEEEECCcCCCcc-ccccCCCCCCCcCCeEEEec-----cccccCCC
Confidence 000001 0000 1257999999988999999999999874 3333 3333332 36778999
Q ss_pred ceEEEEEecC
Q 039188 309 GARILEITEK 318 (341)
Q Consensus 309 g~Rii~l~~~ 318 (341)
-+|+|||..+
T Consensus 423 ~~Ri~Ei~~n 432 (496)
T TIGR03767 423 QGRIIELADN 432 (496)
T ss_pred CceEEEEEeC
Confidence 9999999865
No 10
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.88 E-value=2.6e-21 Score=178.01 Aligned_cols=197 Identities=17% Similarity=0.172 Sum_probs=116.1
Q ss_pred EEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccc---hhhHHHHHHHHHHHHHh---C-C
Q 039188 9 IVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIA---IANASLYWDQAISPTRA---R-G 81 (341)
Q Consensus 9 i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~---~~~~~~~~~~~~~~l~~---~-~ 81 (341)
|+|+||+|++... +.......+.+.+.+++.+||+||++||+++..... ..+....++.+.+.+.+ . .
T Consensus 2 ~~~iSDlH~g~~~-----~~~~~~~~~~~~~~i~~~~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (256)
T cd07401 2 FVHISDIHVSSFH-----PPNRAQDETFCSNFIDVIKPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILKESSVINK 76 (256)
T ss_pred EEEecccccCCcC-----chhhhhHHHHHHHHHHhhCCCEEEEccccccccccCCCcccccHHHHHHHHHHHHHhCCCCc
Confidence 7999999998642 111111123455666778999999999999865421 01112233344444432 2 5
Q ss_pred CCEEEEcCCCCCCCccccccccCCCCCCcccCCCCCCCCCCCccccccCCCchHHHhHHhhhccccccccCCCCCCCCCc
Q 039188 82 IPWASVFGNHDDAAFEWPLEWLSSPGIPQLRCPTEANSSYSGEEECDFRGTPHLELMKKEIDHNVLSHSKKGPKDLWPSI 161 (341)
Q Consensus 82 iP~~~i~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~r~~~~~~~~~~~~~s~~~~~p~~~~~g~ 161 (341)
+|++.++||||.... .+.+. ....+.. |+- ..+ ...
T Consensus 77 ~p~~~v~GNHD~~~~------~~~~~--------------------------~~~~~~~------y~~-~~~-----~~~ 112 (256)
T cd07401 77 EKWFDIRGNHDLFNI------PSLDS--------------------------ENNYYRK------YSA-TGR-----DGS 112 (256)
T ss_pred ceEEEeCCCCCcCCC------CCccc--------------------------hhhHHHH------hhe-ecC-----CCc
Confidence 899999999999641 00000 0001110 000 000 011
Q ss_pred cceEEEeecCCCCCCceEEEEEEeCCCC-------CCCCCCCHHHHHHHHHHhhhhCCCCCCCcEEEEecCchhhhhhcC
Q 039188 162 SNYVLNVSSSHDPNIAVAYLYFLDSGGG-------SYPQVISSEQAEWFLHKAQEINPDSRVPEIVFWHIPSKAYEKVAP 234 (341)
Q Consensus 162 ~~y~l~~~~~~~~~~~~~~l~~LDS~~~-------~~~~~i~~~Ql~WL~~~L~~~~~~~~~~~ivf~H~Pl~~~~~~~~ 234 (341)
..|.... . ...+.+++|||... .+.++++++|++||++.|+++++ ..++|||+|||+......
T Consensus 113 ~~~~~~~-~-----~~~~~~I~Ldt~~~~~~~~~~~~~g~l~~~ql~wL~~~L~~~~~--~~~~IV~~HhP~~~~~~~-- 182 (256)
T cd07401 113 FSFSHTT-R-----FGNYSFIGVDPTLFPGPKRPFNFFGSLDKKLLDRLEKELEKSTN--SNYTIWFGHYPTSTIISP-- 182 (256)
T ss_pred cceEEEe-c-----CCCEEEEEEcCccCCCCCCCCceeccCCHHHHHHHHHHHHhccc--CCeEEEEEcccchhccCC--
Confidence 1122211 1 13589999999742 12477999999999999998653 347999999998532110
Q ss_pred CCCCCCCccCccCCcccchhhccchHHHHHHcCCCceEEEeccccCCCc
Q 039188 235 KSAIERPCVGSINKESVAAQEAEMGIMDILVNRSSVKAVFAGHNHGLDW 283 (341)
Q Consensus 235 ~~~~~~~~~g~~n~e~~~~~~~~~~~~~~l~~~~~V~~v~~GH~H~n~~ 283 (341)
...+ ..+++++|.++ +|.++||||+|.+..
T Consensus 183 ---------~~~~---------~~~~~~ll~~~-~v~~vl~GH~H~~~~ 212 (256)
T cd07401 183 ---------SAKS---------SSKFKDLLKKY-NVTAYLCGHLHPLGG 212 (256)
T ss_pred ---------Ccch---------hHHHHHHHHhc-CCcEEEeCCccCCCc
Confidence 0001 13488888764 899999999998764
No 11
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=99.87 E-value=8.7e-21 Score=176.23 Aligned_cols=244 Identities=16% Similarity=0.210 Sum_probs=145.6
Q ss_pred eEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchh---hHHHHHHHHHHHHHhCCCC
Q 039188 7 FKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIA---NASLYWDQAISPTRARGIP 83 (341)
Q Consensus 7 ~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~---~~~~~~~~~~~~l~~~~iP 83 (341)
++|+++.|.-.+.. .......+.|.+++++.+|||||++||++.+...... .....+..++..+. +++|
T Consensus 1 ~~f~~~gD~g~~~~-------~~~~~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~~~-~~~P 72 (277)
T cd07378 1 LRFLALGDWGGGGT-------AGQKAVAKAMAKVAAELGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSAPS-LQVP 72 (277)
T ss_pred CeEEEEeecCCCCC-------HHHHHHHHHHHHHHHhcCCCEEEeCCCccccCCCCCCcchHHHHHHHHHccchh-hcCC
Confidence 47888999876521 1123456667777777899999999999864432111 11122344444443 6899
Q ss_pred EEEEcCCCCCCCccccccccCCCCCCcccCCCCCCCCCCCccccccCCCchHHHhHHhhhccccccccCCCCCCCCCccc
Q 039188 84 WASVFGNHDDAAFEWPLEWLSSPGIPQLRCPTEANSSYSGEEECDFRGTPHLELMKKEIDHNVLSHSKKGPKDLWPSISN 163 (341)
Q Consensus 84 ~~~i~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~r~~~~~~~~~~~~~s~~~~~p~~~~~g~~~ 163 (341)
+++++||||.... .. .+ +. .... . ..++.. .+...
T Consensus 73 ~~~v~GNHD~~~~------~~------------------------------~~-~~-~~~~-~-----~~~~~~-~~~~~ 107 (277)
T cd07378 73 WYLVLGNHDYSGN------VS------------------------------AQ-ID-YTKR-P-----NSPRWT-MPAYY 107 (277)
T ss_pred eEEecCCcccCCC------ch------------------------------he-ee-hhcc-C-----CCCCcc-Ccchh
Confidence 9999999999741 00 00 00 0000 0 001000 11134
Q ss_pred eEEEeecCCCCCCceEEEEEEeCCCC------------CCCCCCCHHHHHHHHHHhhhhCCCCCCCcEEEEecCchhhhh
Q 039188 164 YVLNVSSSHDPNIAVAYLYFLDSGGG------------SYPQVISSEQAEWFLHKAQEINPDSRVPEIVFWHIPSKAYEK 231 (341)
Q Consensus 164 y~l~~~~~~~~~~~~~~l~~LDS~~~------------~~~~~i~~~Ql~WL~~~L~~~~~~~~~~~ivf~H~Pl~~~~~ 231 (341)
|.+...... ....+++++|||... .+.+.+..+|++||+++|++.++ .++||++|||+.....
T Consensus 108 y~~~~~~~~--~~~~~~~i~LDt~~~~~~~~~~~~~~~~~~~~~~~~Q~~wL~~~L~~~~~---~~~iv~~H~P~~~~~~ 182 (277)
T cd07378 108 YRVSFPFPS--SDTTVEFIMIDTVPLCGNSDDIASPYGPPNGKLAEEQLAWLEKTLAASTA---DWKIVVGHHPIYSSGE 182 (277)
T ss_pred eEEEeecCC--CCCEEEEEEEeChhHcCccccccccccCcchhhHHHHHHHHHHHHHhcCC---CeEEEEeCccceeCCC
Confidence 455442110 023699999999742 12356899999999999998753 5789999999964321
Q ss_pred hcCCCCCCCCccCccCCcccchhhccchHHHHHHcCCCceEEEeccccCCCcccccC--CeEEEeecCccCCCC------
Q 039188 232 VAPKSAIERPCVGSINKESVAAQEAEMGIMDILVNRSSVKAVFAGHNHGLDWCCPYQ--RLWLCYARHSGYGGY------ 303 (341)
Q Consensus 232 ~~~~~~~~~~~~g~~n~e~~~~~~~~~~~~~~l~~~~~V~~v~~GH~H~n~~~~~~~--gi~l~~g~~tg~~~~------ 303 (341)
.. . . +.....+.+++.+ .+|.++||||.|.... .... |+.++.+++.|+..+
T Consensus 183 ~~-------------~-~----~~~~~~l~~l~~~-~~v~~vl~GH~H~~~~-~~~~~~~~~~i~~G~~~~~~~~~~~~~ 242 (277)
T cd07378 183 HG-------------P-T----SCLVDRLLPLLKK-YKVDAYLSGHDHNLQH-IKDDGSGTSFVVSGAGSKARPSVKHID 242 (277)
T ss_pred CC-------------C-c----HHHHHHHHHHHHH-cCCCEEEeCCccccee-eecCCCCcEEEEeCCCcccCCCCCccC
Confidence 10 0 0 1123467777766 4799999999998653 3455 888887776664211
Q ss_pred ---------CCCCCceEEEEEecCCCceeEEEEccC
Q 039188 304 ---------GDWARGARILEITEKPFSLKSWIRMED 330 (341)
Q Consensus 304 ---------~~~~~g~Rii~l~~~~~~~~t~~r~~~ 330 (341)
.....|+.+|+++.+ ++..-....+
T Consensus 243 ~~~~~~~~~~~~~~Gy~~i~v~~~--~l~~~~~~~~ 276 (277)
T cd07378 243 KVPQFFSGFTSSGGGFAYLELTKE--ELTVRFYDAD 276 (277)
T ss_pred cccccccccccCCCCEEEEEEecC--EEEEEEECCC
Confidence 123588999999864 4444333433
No 12
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.86 E-value=1.9e-20 Score=169.87 Aligned_cols=205 Identities=16% Similarity=0.096 Sum_probs=124.8
Q ss_pred EEEEecCCCCcCCC---CCCCCCCChhHHHHHHHHHhhh--CCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCC
Q 039188 9 IVLFADLHFGESAW---TDWGPLQDVNSSRVMSTVLDDE--APGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIP 83 (341)
Q Consensus 9 i~~isDlH~~~~~~---~~~~~~~~~~~~~~l~~~l~~~--~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP 83 (341)
|.++||+|+..... ..+| +...+.++.+.+.++.. +||+||++||+++.... . .+...++.|.....|
T Consensus 1 ~~~~sDlHl~~~~~~~~~~~g-~~~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~~~~-----~-~~~~~l~~l~~l~~~ 73 (232)
T cd07393 1 IFAIADLHLNLDPTKPMDVFG-PEWKNHTEKIKENWDNVVAPEDIVLIPGDISWAMKL-----E-EAKLDLAWIDALPGT 73 (232)
T ss_pred CeEEEeeccCCCCCCCCcccC-ccHHHHHHHHHHHHHhcCCCCCEEEEcCCCccCCCh-----H-HHHHHHHHHHhCCCC
Confidence 57999999986321 1112 12245667777776665 99999999999965431 1 123455566666678
Q ss_pred EEEEcCCCCCCCccccccccCCCCCCcccCCCCCCCCCCCccccccCCCchHHHhHHhhhccccccccCCCCCCCCCccc
Q 039188 84 WASVFGNHDDAAFEWPLEWLSSPGIPQLRCPTEANSSYSGEEECDFRGTPHLELMKKEIDHNVLSHSKKGPKDLWPSISN 163 (341)
Q Consensus 84 ~~~i~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~r~~~~~~~~~~~~~s~~~~~p~~~~~g~~~ 163 (341)
+++|+||||.... .... +...+....... . .|
T Consensus 74 v~~V~GNHD~~~~------------------------------------~~~~-~~~~l~~~~~~~----------~-~n 105 (232)
T cd07393 74 KVLLKGNHDYWWG------------------------------------SASK-LRKALEESRLAL----------L-FN 105 (232)
T ss_pred eEEEeCCccccCC------------------------------------CHHH-HHHHHHhcCeEE----------e-cc
Confidence 9999999998420 0111 111121100000 0 01
Q ss_pred eEEEeecCCCCCCceEEEEEEeC--CCC------------CCCCCCCHHHHHHHHHHhhhhCCC-CCCCcEEEEecCchh
Q 039188 164 YVLNVSSSHDPNIAVAYLYFLDS--GGG------------SYPQVISSEQAEWFLHKAQEINPD-SRVPEIVFWHIPSKA 228 (341)
Q Consensus 164 y~l~~~~~~~~~~~~~~l~~LDS--~~~------------~~~~~i~~~Ql~WL~~~L~~~~~~-~~~~~ivf~H~Pl~~ 228 (341)
..+.+ ..+.++.++. ..+ ...+.+.++|+.||++.|+++... ...+.|+++|+|+..
T Consensus 106 ~~~~~--------~~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~~~~~~i~~~H~p~~~ 177 (232)
T cd07393 106 NAYID--------DDVAICGTRGWDNPGNPWPPINETLKVEEDEKIFERELERLELSLKAAKKREKEKIKIVMLHYPPAN 177 (232)
T ss_pred CcEEE--------CCEEEEEEEeeCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCcC
Confidence 12222 1255555542 111 112446688999999999987532 124799999999853
Q ss_pred hhhhcCCCCCCCCccCccCCcccchhhccchHHHHHHcCCCceEEEeccccCCCc----ccccCCeEEEeecCccCC
Q 039188 229 YEKVAPKSAIERPCVGSINKESVAAQEAEMGIMDILVNRSSVKAVFAGHNHGLDW----CCPYQRLWLCYARHSGYG 301 (341)
Q Consensus 229 ~~~~~~~~~~~~~~~g~~n~e~~~~~~~~~~~~~~l~~~~~V~~v~~GH~H~n~~----~~~~~gi~l~~g~~tg~~ 301 (341)
.. .+. ..+.+.+.+ .+|++++|||+|.... .+.++||.+..+|+|+++
T Consensus 178 ~~---------------~~~---------~~~~~~~~~-~~v~~vl~GH~H~~~~~~~~~~~~~gi~~~~~~~~~~~ 229 (232)
T cd07393 178 EN---------------GDD---------SPISKLIEE-YGVDICVYGHLHGVGRDRAINGERGGIRYQLVSADYLN 229 (232)
T ss_pred CC---------------CCH---------HHHHHHHHH-cCCCEEEECCCCCCcccccccceECCEEEEEEcchhcC
Confidence 21 111 356777766 4899999999998642 345799999999999864
No 13
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.85 E-value=1.9e-19 Score=167.51 Aligned_cols=207 Identities=17% Similarity=0.202 Sum_probs=127.9
Q ss_pred eEEEEEecCCCCc-CCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHH--hCCCC
Q 039188 7 FKIVLFADLHFGE-SAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTR--ARGIP 83 (341)
Q Consensus 7 ~~i~~isDlH~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~--~~~iP 83 (341)
++|+||||+|++. .. .....+..+.+.++..+||+||+||||++.+. ...++.+.+.|. +...|
T Consensus 1 ~~i~~isD~H~~~~~~-------~~~~~~~~~~~~i~~~~~D~~v~tGDl~~~~~------~~~~~~~~~~l~~~~~~~~ 67 (301)
T COG1409 1 MRIAHISDLHLGALGV-------DSEELLEALLAAIEQLKPDLLVVTGDLTNDGE------PEEYRRLKELLARLELPAP 67 (301)
T ss_pred CeEEEEecCccccccc-------chHHHHHHHHHHHhcCCCCEEEEccCcCCCCC------HHHHHHHHHHHhhccCCCc
Confidence 5899999999985 11 11233444444455678999999999999854 223456666666 77899
Q ss_pred EEEEcCCCCCCCccccccccCCCCCCcccCCCCCCCCCCCccccccCCCchHHHhHHhhhccccccccCCCCCCCCCccc
Q 039188 84 WASVFGNHDDAAFEWPLEWLSSPGIPQLRCPTEANSSYSGEEECDFRGTPHLELMKKEIDHNVLSHSKKGPKDLWPSISN 163 (341)
Q Consensus 84 ~~~i~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~r~~~~~~~~~~~~~s~~~~~p~~~~~g~~~ 163 (341)
++++|||||..... ...+.... ... ..
T Consensus 68 ~~~vpGNHD~~~~~-------------------------------------~~~~~~~~---------~~~-------~~ 94 (301)
T COG1409 68 VIVVPGNHDARVVN-------------------------------------GEAFSDQF---------FNR-------YA 94 (301)
T ss_pred eEeeCCCCcCCchH-------------------------------------HHHhhhhh---------ccc-------Cc
Confidence 99999999998510 00110000 000 00
Q ss_pred eEEEeecCCCCCCceEEEEEEeCCCC-CCCCCCCHHHHHHHHHHhhhhCCCCCCCcEEEEecCchhhhhhcCCCCCCCCc
Q 039188 164 YVLNVSSSHDPNIAVAYLYFLDSGGG-SYPQVISSEQAEWFLHKAQEINPDSRVPEIVFWHIPSKAYEKVAPKSAIERPC 242 (341)
Q Consensus 164 y~l~~~~~~~~~~~~~~l~~LDS~~~-~~~~~i~~~Ql~WL~~~L~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~~~~~ 242 (341)
+...... .+.++++.+||... ...|.+++.|+.||++.|++.+.......++++|||++-.......
T Consensus 95 ~~~~~~~-----~~~~~~~~~d~~~~~~~~G~~~~~q~~~l~~~l~~~~~~~~~~~v~~~hh~~~~~~~~~~~------- 162 (301)
T COG1409 95 VLVGACS-----SGGWRVIGLDSSVPGVPLGRLGAEQLDWLEEALAAAPERAKDTVVVLHHHPLPSPGTGVDR------- 162 (301)
T ss_pred ceEeecc-----CCceEEEEecCCCCCCCCCEECHHHHHHHHHHHHhCccccCceEEEecCCCCCCCCCccce-------
Confidence 1111110 14589999999864 3457899999999999999876421113455555555432221110
Q ss_pred cCccCCcccchhhccchHHHHHHcCCC-ceEEEeccccCCC-cccccCCeEEE-----eecCccC
Q 039188 243 VGSINKESVAAQEAEMGIMDILVNRSS-VKAVFAGHNHGLD-WCCPYQRLWLC-----YARHSGY 300 (341)
Q Consensus 243 ~g~~n~e~~~~~~~~~~~~~~l~~~~~-V~~v~~GH~H~n~-~~~~~~gi~l~-----~g~~tg~ 300 (341)
....+ ...+...+...++ |++|++||.|... ....+.+..+. ++++++.
T Consensus 163 ~~l~~---------~~~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (301)
T COG1409 163 VALRD---------AGELLDVLIAHGNDVRLVLSGHIHLAAQTVYQLNGTRLSDLLVGAGPATCS 218 (301)
T ss_pred eeeec---------chhHHHHHHhcCCceEEEEeCcccccccccceeCCeeeeecccccCCccce
Confidence 00001 1456777777666 9999999999862 35567777666 5666664
No 14
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.84 E-value=8.3e-20 Score=171.47 Aligned_cols=208 Identities=15% Similarity=0.171 Sum_probs=117.3
Q ss_pred CCCEEEEeCcccCCCccchh-hHHH--HHHHHHHHHHh--CCCCEEEEcCCCCCCCccccccccCCCCCCcccCCCCCCC
Q 039188 45 APGLVIYLGDVITANNIAIA-NASL--YWDQAISPTRA--RGIPWASVFGNHDDAAFEWPLEWLSSPGIPQLRCPTEANS 119 (341)
Q Consensus 45 ~pD~vv~tGDl~~~~~~~~~-~~~~--~~~~~~~~l~~--~~iP~~~i~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (341)
+|||||+|||++........ .... .+..+.+.+.+ .++|++.++||||..... ++...-.
T Consensus 68 ~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~~p~~---------~~~~~~~------ 132 (296)
T cd00842 68 KPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDSYPVN---------QFPPNNS------ 132 (296)
T ss_pred CCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCCCccc---------ccCCccc------
Confidence 89999999999986643211 1111 23445555554 479999999999997410 0000000
Q ss_pred CCCCccccccCCCchHHHhHHhhhccccccccCCCCCCCCCccceEEEeecCCCCCCceEEEEEEeCCCCCC--------
Q 039188 120 SYSGEEECDFRGTPHLELMKKEIDHNVLSHSKKGPKDLWPSISNYVLNVSSSHDPNIAVAYLYFLDSGGGSY-------- 191 (341)
Q Consensus 120 ~~~~~~~~~f~~~~r~~~~~~~~~~~~~s~~~~~p~~~~~g~~~y~l~~~~~~~~~~~~~~l~~LDS~~~~~-------- 191 (341)
.....+.+...... ..... .... ....+.|...+. ..+++++|||.....
T Consensus 133 -----------~~~~~~~~~~~w~~-~l~~~--~~~~-~~~ggYY~~~~~-------~~l~vI~Lnt~~~~~~~~~~~~~ 190 (296)
T cd00842 133 -----------PSWLYDALAELWKS-WLPEE--AEET-FKKGGYYSVPVK-------PGLRVISLNTNLYYKKNFWLLGS 190 (296)
T ss_pred -----------ccHHHHHHHHHHHh-hcCHH--HHHH-hhcceEEEEEcC-------CCeEEEEEeCccccccChhhhcc
Confidence 00011111111110 00000 0000 012244555442 358999999974211
Q ss_pred CCCCCHHHHHHHHHHhhhhCCCCCCCcEEEEecCchhhhhhcCCCCCCCCccCccCCcccchhhccchHHHHHHcCCC-c
Q 039188 192 PQVISSEQAEWFLHKAQEINPDSRVPEIVFWHIPSKAYEKVAPKSAIERPCVGSINKESVAAQEAEMGIMDILVNRSS-V 270 (341)
Q Consensus 192 ~~~i~~~Ql~WL~~~L~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~~~~~~g~~n~e~~~~~~~~~~~~~~l~~~~~-V 270 (341)
.......|++||+++|++++++ +.+++|++|||+...... . + +....+|.+++.++++ |
T Consensus 191 ~~~~~~~Ql~WL~~~L~~a~~~-~~~v~I~~HiPp~~~~~~------------~-~------~~~~~~~~~ii~~y~~~i 250 (296)
T cd00842 191 NETDPAGQLQWLEDELQEAEQA-GEKVWIIGHIPPGVNSYD------------T-L------ENWSERYLQIINRYSDTI 250 (296)
T ss_pred CCCCHHHHHHHHHHHHHHHHHC-CCeEEEEeccCCCCcccc------------c-c------hHHHHHHHHHHHHHHHhh
Confidence 1234588999999999998643 357899999999642110 0 0 0112568888887765 7
Q ss_pred eEEEeccccCCCcccccC-------CeEEEeecCccCCCCCCCCCceE
Q 039188 271 KAVFAGHNHGLDWCCPYQ-------RLWLCYARHSGYGGYGDWARGAR 311 (341)
Q Consensus 271 ~~v~~GH~H~n~~~~~~~-------gi~l~~g~~tg~~~~~~~~~g~R 311 (341)
.++|+||+|...+...+. +..+..+|+.. ++....||+|
T Consensus 251 ~~~~~GH~H~d~~~~~~~~~~~~~~~~~~~~~psit--p~~~~nP~~r 296 (296)
T cd00842 251 AGQFFGHTHRDEFRVFYDDNDTGEPINVALIAPSVT--PYSGNNPGFR 296 (296)
T ss_pred heeeecccccceEEEEeCCCCCCCceEEEEecCccC--cCCCCCCCCC
Confidence 899999999987765443 34566666655 2333445554
No 15
>PLN02533 probable purple acid phosphatase
Probab=99.84 E-value=3.7e-19 Score=174.59 Aligned_cols=257 Identities=21% Similarity=0.246 Sum_probs=142.3
Q ss_pred CCCeEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCC
Q 039188 4 GAPFKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIP 83 (341)
Q Consensus 4 ~~~~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP 83 (341)
..+++|++++|+|.... ...+++. +++.+|||||++|||++..... .....+.++++++. ..+|
T Consensus 137 ~~~~~f~v~GDlG~~~~---------~~~tl~~----i~~~~pD~vl~~GDl~y~~~~~--~~wd~f~~~i~~l~-s~~P 200 (427)
T PLN02533 137 KFPIKFAVSGDLGTSEW---------TKSTLEH----VSKWDYDVFILPGDLSYANFYQ--PLWDTFGRLVQPLA-SQRP 200 (427)
T ss_pred CCCeEEEEEEeCCCCcc---------cHHHHHH----HHhcCCCEEEEcCccccccchH--HHHHHHHHHhhhHh-hcCc
Confidence 45799999999975321 1123332 3456899999999999864321 11122345555554 3699
Q ss_pred EEEEcCCCCCCCccccccccCCCCCCcccCCCCCCCCCCCccccccCCCchHHHhHHhhhccccccccCCCCCCCCCccc
Q 039188 84 WASVFGNHDDAAFEWPLEWLSSPGIPQLRCPTEANSSYSGEEECDFRGTPHLELMKKEIDHNVLSHSKKGPKDLWPSISN 163 (341)
Q Consensus 84 ~~~i~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~r~~~~~~~~~~~~~s~~~~~p~~~~~g~~~ 163 (341)
+++++||||..... .. . ...|..+ ...+...+...+. .+...
T Consensus 201 ~m~~~GNHE~~~~~----~~-~--------------------~~~f~~y---------~~rf~mP~~~~g~----~~~~y 242 (427)
T PLN02533 201 WMVTHGNHELEKIP----IL-H--------------------PEKFTAY---------NARWRMPFEESGS----TSNLY 242 (427)
T ss_pred eEEeCccccccccc----cc-c--------------------CcCccch---------hhcccCCccccCC----CCCce
Confidence 99999999987310 00 0 0001000 0000000100111 12245
Q ss_pred eEEEeecCCCCCCceEEEEEEeCCCCCCCCCCCHHHHHHHHHHhhhhCCCCCCCcEEEEecCchhhhhhcCCCCCCCCcc
Q 039188 164 YVLNVSSSHDPNIAVAYLYFLDSGGGSYPQVISSEQAEWFLHKAQEINPDSRVPEIVFWHIPSKAYEKVAPKSAIERPCV 243 (341)
Q Consensus 164 y~l~~~~~~~~~~~~~~l~~LDS~~~~~~~~i~~~Ql~WL~~~L~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~~~~~~ 243 (341)
|.+... .+++++|||.... ....+|++||++.|++.+......+|+++|+|++...... .
T Consensus 243 YSfd~g--------~vhfI~Lds~~~~---~~~~~Q~~WLe~dL~~~~r~~~pwiIv~~H~P~y~s~~~~---------~ 302 (427)
T PLN02533 243 YSFNVY--------GVHIIMLGSYTDF---EPGSEQYQWLENNLKKIDRKTTPWVVAVVHAPWYNSNEAH---------Q 302 (427)
T ss_pred EEEEEC--------CEEEEEEeCCccc---cCchHHHHHHHHHHHhhcccCCCEEEEEeCCCeeeccccc---------C
Confidence 666552 4789999997421 2568999999999998764322348899999997532211 0
Q ss_pred CccCCcccchhhccchHHHHHHcCCCceEEEeccccCCCccc-cc------CC-eEEEeecCccCC----CCC-------
Q 039188 244 GSINKESVAAQEAEMGIMDILVNRSSVKAVFAGHNHGLDWCC-PY------QR-LWLCYARHSGYG----GYG------- 304 (341)
Q Consensus 244 g~~n~e~~~~~~~~~~~~~~l~~~~~V~~v~~GH~H~n~~~~-~~------~g-i~l~~g~~tg~~----~~~------- 304 (341)
+. .+.. .....+.++|. ..+|.++||||+|...... .+ .| ++++.|.+-... .+.
T Consensus 303 ~~--~~~~---~~r~~le~Ll~-~~~VdlvlsGH~H~YeR~~p~~~~~~~~~gpvyiv~G~gG~~e~~~~~~~~~~~~~s 376 (427)
T PLN02533 303 GE--KESV---GMKESMETLLY-KARVDLVFAGHVHAYERFDRVYQGKTDKCGPVYITIGDGGNREGLATKYIDPKPDIS 376 (427)
T ss_pred Cc--chhH---HHHHHHHHHHH-HhCCcEEEecceecccccccccCCccCCCCCEEEEeCCCccccccccccCCCCCCce
Confidence 10 0101 11134455554 4799999999999764321 11 23 344444322110 111
Q ss_pred ---CCCCceEEEEEecCCCceeEEEEccCCc--Eeeeeeec
Q 039188 305 ---DWARGARILEITEKPFSLKSWIRMEDGA--VHSQVTLT 340 (341)
Q Consensus 305 ---~~~~g~Rii~l~~~~~~~~t~~r~~~g~--~~~~~~~~ 340 (341)
+..-|+-.+.+.....-.-+|+|..+|+ +.+++.|+
T Consensus 377 ~~r~~~~G~~~l~v~n~t~l~~~~~~~~~~~~~~~D~~~i~ 417 (427)
T PLN02533 377 LFREASFGHGQLNVVDANTMEWTWHRNDDDQSVASDSVWLK 417 (427)
T ss_pred eEEeccCCEEEEEEEcCCeEEEEEEecCCCCceeeeEEEEE
Confidence 1245666666654434445679987774 77888775
No 16
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=99.83 E-value=8.5e-19 Score=168.60 Aligned_cols=146 Identities=12% Similarity=0.082 Sum_probs=86.8
Q ss_pred CccceEEEeecCCCCCCceEEEEEEeCCC--------CCCCCCCCHHHHHHHHHHhhhhCCCCCCCcEEEEecCchhh--
Q 039188 160 SISNYVLNVSSSHDPNIAVAYLYFLDSGG--------GSYPQVISSEQAEWFLHKAQEINPDSRVPEIVFWHIPSKAY-- 229 (341)
Q Consensus 160 g~~~y~l~~~~~~~~~~~~~~l~~LDS~~--------~~~~~~i~~~Ql~WL~~~L~~~~~~~~~~~ivf~H~Pl~~~-- 229 (341)
+..+|.+...+ ...+++++|||.. +.+.|.|+++|++||+++|++.++ +.|.+|++|||+...
T Consensus 291 G~~yYsFd~~g-----~vplrvIvLDSt~~~~~~s~pG~~~G~Ld~eQLaWLe~~La~a~a--~~p~VVV~hHpPi~t~g 363 (492)
T TIGR03768 291 DFACYSFVPKS-----DVPLKVIVLDDTQSEHDGSHDIHGHGSLDAKRWDWLKAELARGQA--DGQLMIIAAHIPIAVSP 363 (492)
T ss_pred CcceeEEecCC-----CcceEEEEECCCccccccCCCCCcceeeCHHHHHHHHHHHHhCcC--CCceEEEEeCCCcccCC
Confidence 44577776321 0135999999874 557788999999999999998763 246566655555432
Q ss_pred hhhcCCCCCCCCccCccC-CcccchhhccchHHHHHHcCCCceEEEeccccCCCcccccCCeEEEeecCccC-----CCC
Q 039188 230 EKVAPKSAIERPCVGSIN-KESVAAQEAEMGIMDILVNRSSVKAVFAGHNHGLDWCCPYQRLWLCYARHSGY-----GGY 303 (341)
Q Consensus 230 ~~~~~~~~~~~~~~g~~n-~e~~~~~~~~~~~~~~l~~~~~V~~v~~GH~H~n~~~~~~~gi~l~~g~~tg~-----~~~ 303 (341)
....+.++ .+... .+.........+++++|.++++|+++||||.|.+.. ..+..-. -.-|.-|| .+.
T Consensus 364 i~~md~w~-----~~~~~~~~~L~n~~~~~eLlaLL~~hPnVla~LsGHvHrn~v-~a~~~p~-~~~pe~gFWeveTaSl 436 (492)
T TIGR03768 364 IGSEMEWW-----LGAADANPDLQNAVSLTGLVTTLQKYPNLLMWIAGHRHLNTV-KAFPSPD-PARPEYGFWQVETASL 436 (492)
T ss_pred ccchhhhc-----cccccccccccccccHHHHHHHHhcCCCeEEEEcCCcccccc-cccCCCC-CCCCcCceEEEeehhh
Confidence 11100000 00000 000000111247999999999999999999998753 2221100 00022233 256
Q ss_pred CCCCCceEEEEEecCC
Q 039188 304 GDWARGARILEITEKP 319 (341)
Q Consensus 304 ~~~~~g~Rii~l~~~~ 319 (341)
.+++.-.|+|||..+.
T Consensus 437 ~DfPQq~R~~Ei~~n~ 452 (492)
T TIGR03768 437 RDFPQQFRTFEIYLNS 452 (492)
T ss_pred ccchhhceEEEEEeCC
Confidence 6899999999998653
No 17
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.80 E-value=4.1e-18 Score=148.52 Aligned_cols=181 Identities=17% Similarity=0.147 Sum_probs=107.3
Q ss_pred EEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEc
Q 039188 9 IVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVF 88 (341)
Q Consensus 9 i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~ 88 (341)
|+++||+|.... .+.. ..+++.+||+||++||+++.... ..+ ..+ +.+.+.++|+++|+
T Consensus 1 i~~~sD~H~~~~------------~~~~--~~~~~~~~D~vv~~GDl~~~~~~-----~~~-~~~-~~l~~~~~p~~~v~ 59 (188)
T cd07392 1 ILAISDIHGDVE------------KLEA--IILKAEEADAVIVAGDITNFGGK-----EAA-VEI-NLLLAIGVPVLAVP 59 (188)
T ss_pred CEEEEecCCCHH------------HHHH--HHhhccCCCEEEECCCccCcCCH-----HHH-HHH-HHHHhcCCCEEEEc
Confidence 689999998531 1111 33456789999999999987652 111 233 67777899999999
Q ss_pred CCCCCCCccccccccCCCCCCcccCCCCCCCCCCCccccccCCCchHHHhHHhhhccccccccCCCCCCCCCccceEEEe
Q 039188 89 GNHDDAAFEWPLEWLSSPGIPQLRCPTEANSSYSGEEECDFRGTPHLELMKKEIDHNVLSHSKKGPKDLWPSISNYVLNV 168 (341)
Q Consensus 89 GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~r~~~~~~~~~~~~~s~~~~~p~~~~~g~~~y~l~~ 168 (341)
||||.... +.. +.. +. ....+..+.+
T Consensus 60 GNHD~~~~-----------------------------------------~~~-~~~--------~~----~~~~~~~~~~ 85 (188)
T cd07392 60 GNCDTPEI-----------------------------------------LGL-LTS--------AG----LNLHGKVVEV 85 (188)
T ss_pred CCCCCHHH-----------------------------------------HHh-hhc--------Cc----EecCCCEEEE
Confidence 99998641 000 000 00 0000112222
Q ss_pred ecCCCCCCceEEEEEEeCCCC---CCCCCCCHHHHHHHHHHhhhhCCCCCCCcEEEEecCchhh-hhhcCCCCCCCCccC
Q 039188 169 SSSHDPNIAVAYLYFLDSGGG---SYPQVISSEQAEWFLHKAQEINPDSRVPEIVFWHIPSKAY-EKVAPKSAIERPCVG 244 (341)
Q Consensus 169 ~~~~~~~~~~~~l~~LDS~~~---~~~~~i~~~Ql~WL~~~L~~~~~~~~~~~ivf~H~Pl~~~-~~~~~~~~~~~~~~g 244 (341)
..++++.+++... ...+.++++|++|+ +.+.... ..+.|+++|+||... .+.. ...
T Consensus 86 --------~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~-~~l~~~~---~~~~ilv~H~pp~~~~~d~~--------~~~ 145 (188)
T cd07392 86 --------GGYTFVGIGGSNPTPFNTPIELSEEEIVSD-GRLNNLL---AKNLILVTHAPPYGTAVDRV--------SGG 145 (188)
T ss_pred --------CCEEEEEeCCCCCCCCCCccccCHHHHHHh-hhhhccC---CCCeEEEECCCCcCCccccc--------CCC
Confidence 2378899987531 12356889999999 4443322 357999999999642 1110 000
Q ss_pred ccCCcccchhhccchHHHHHHcCCCceEEEeccccCCCcccccCCeEEE
Q 039188 245 SINKESVAAQEAEMGIMDILVNRSSVKAVFAGHNHGLDWCCPYQRLWLC 293 (341)
Q Consensus 245 ~~n~e~~~~~~~~~~~~~~l~~~~~V~~v~~GH~H~n~~~~~~~gi~l~ 293 (341)
.+ .. ...+.+++.+ .++++++|||+|........++..++
T Consensus 146 -~~---~g----~~~l~~li~~-~~~~~~l~GH~H~~~~~~~~~~~~~~ 185 (188)
T cd07392 146 -FH---VG----SKAIRKFIEE-RQPLLCICGHIHESRGVDKIGNTLVV 185 (188)
T ss_pred -Cc---cC----CHHHHHHHHH-hCCcEEEEeccccccceeeeCCeEEe
Confidence 00 00 1356666655 58999999999986323344554433
No 18
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.79 E-value=3.3e-18 Score=155.82 Aligned_cols=90 Identities=10% Similarity=-0.027 Sum_probs=55.6
Q ss_pred CCCCHHHHHHHHHHhhhhCCCCCCCcEEEEecCchhhhhhcCCCCCCCCccCccCCcccchhhcc-chHHHHHHcCCCce
Q 039188 193 QVISSEQAEWFLHKAQEINPDSRVPEIVFWHIPSKAYEKVAPKSAIERPCVGSINKESVAAQEAE-MGIMDILVNRSSVK 271 (341)
Q Consensus 193 ~~i~~~Ql~WL~~~L~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~~~~~~g~~n~e~~~~~~~~-~~~~~~l~~~~~V~ 271 (341)
+++.++|++||++.|+++. ..++|+++||||....-.. .... ..|+... ...+ ..+.+.+.++ +|+
T Consensus 145 ~~~~~~~l~~l~~~l~~~~---~~~~ivvtH~pP~~~~~~~---~~~~---~~~~~~~---~~~~s~~l~~li~~~-~v~ 211 (239)
T TIGR03729 145 PERTAIVLKQLKKQLNQLD---NKQVIFVTHFVPHRDFIYV---PMDH---RRFDMFN---AFLGSQHFGQLLVKY-EIK 211 (239)
T ss_pred HHHHHHHHHHHHHHHHhcC---CCCEEEEEcccchHHHhcC---CCCC---cchhhhh---hccChHHHHHHHHHh-CCC
Confidence 4588999999999998865 2579999999995321100 0000 0011000 0112 4567777665 999
Q ss_pred EEEeccccCCCcccccCCeEEEee
Q 039188 272 AVFAGHNHGLDWCCPYQRLWLCYA 295 (341)
Q Consensus 272 ~v~~GH~H~n~~~~~~~gi~l~~g 295 (341)
+++|||+|........+|+.++.-
T Consensus 212 ~~i~GH~H~~~~~~~i~~~~~~~~ 235 (239)
T TIGR03729 212 DVIFGHLHRRFGPLTIGGTTYHNR 235 (239)
T ss_pred EEEECCccCCCCCEEECCEEEEec
Confidence 999999998632233478776653
No 19
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=99.77 E-value=2.3e-17 Score=151.66 Aligned_cols=186 Identities=15% Similarity=0.137 Sum_probs=105.8
Q ss_pred HHHHHHhhhCCCEEEEeCcccCCCccc-hhhHHHHHHHHHHHHHhC--CCCEEEEcCCCCCCCccccccccCCCCCCccc
Q 039188 36 VMSTVLDDEAPGLVIYLGDVITANNIA-IANASLYWDQAISPTRAR--GIPWASVFGNHDDAAFEWPLEWLSSPGIPQLR 112 (341)
Q Consensus 36 ~l~~~l~~~~pD~vv~tGDl~~~~~~~-~~~~~~~~~~~~~~l~~~--~iP~~~i~GNHD~~~~~~~~~~~~~~~~~~~~ 112 (341)
....++...+||+||++|||++++... .++..+.++++.+.+... .+|+++||||||....+ +.
T Consensus 36 ~~~~~~~~l~PD~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDig~~~---------~~---- 102 (257)
T cd08163 36 NWRYMQKQLKPDSTIFLGDLFDGGRDWADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDIGFGN---------GV---- 102 (257)
T ss_pred HHHHHHHhcCCCEEEEecccccCCeeCcHHHHHHHHHHHHHHhcCCCccceEEEeCCCcccCCCC---------CC----
Confidence 344444567999999999999976532 222223345555555443 48999999999986310 00
Q ss_pred CCCCCCCCCCCccccccCCCchHHHhHHhhhccccccccCCCCCCCCCccceEEEeecCCCCCCceEEEEEEeCCC--CC
Q 039188 113 CPTEANSSYSGEEECDFRGTPHLELMKKEIDHNVLSHSKKGPKDLWPSISNYVLNVSSSHDPNIAVAYLYFLDSGG--GS 190 (341)
Q Consensus 113 ~~~~~~~~~~~~~~~~f~~~~r~~~~~~~~~~~~~s~~~~~p~~~~~g~~~y~l~~~~~~~~~~~~~~l~~LDS~~--~~ 190 (341)
. ....+.+... .|..+|.+.+ .++++++|||.. +.
T Consensus 103 ----------------~--~~~~~rf~~~-----------------Fg~~~~~~~~--------~~~~fV~Lds~~l~~~ 139 (257)
T cd08163 103 ----------------V--LPVRQRFEKY-----------------FGPTSRVIDV--------GNHTFVILDTISLSNK 139 (257)
T ss_pred ----------------C--HHHHHHHHHH-----------------hCCCceEEEE--------CCEEEEEEccccccCC
Confidence 0 0011111111 2224556654 347899999974 22
Q ss_pred CCCCCCHHHHHHHHHHhhhhCCCCCCCcEEEEecCchhhhhh-----cCCCCCCCCccCccCCcccchhhccchHHHHHH
Q 039188 191 YPQVISSEQAEWFLHKAQEINPDSRVPEIVFWHIPSKAYEKV-----APKSAIERPCVGSINKESVAAQEAEMGIMDILV 265 (341)
Q Consensus 191 ~~~~i~~~Ql~WL~~~L~~~~~~~~~~~ivf~H~Pl~~~~~~-----~~~~~~~~~~~g~~n~e~~~~~~~~~~~~~~l~ 265 (341)
..+.+...|.+||++.|+..++ ..|+|+|+|||++..... .+.......-.| ..-+++..++.-..+++.+
T Consensus 140 ~~~~~~~~~~~~l~~~l~~~~~--~~p~ILl~H~Plyr~~~~~cg~~re~~~~~~~~~g-~~yq~~l~~~~s~~il~~~- 215 (257)
T cd08163 140 DDPDVYQPPREFLHSFSAMKVK--SKPRILLTHVPLYRPPNTSCGPLRESKTPLPYGYG-YQYQNLLEPSLSEVILKAV- 215 (257)
T ss_pred cccccchhHHHHHHhhhhccCC--CCcEEEEeccccccCCCCCCCCccccCCCCCCCCC-ccceeecCHHHHHHHHHhh-
Confidence 3456889999999999887543 468999999999632211 000000000011 1111122222223455544
Q ss_pred cCCCceEEEeccccCCCcccc
Q 039188 266 NRSSVKAVFAGHNHGLDWCCP 286 (341)
Q Consensus 266 ~~~~V~~v~~GH~H~n~~~~~ 286 (341)
+..+||+||+|. +|..
T Consensus 216 ---~P~~vfsGhdH~--~C~~ 231 (257)
T cd08163 216 ---QPVIAFSGDDHD--YCEV 231 (257)
T ss_pred ---CCcEEEecCCCc--ccee
Confidence 557899999994 6754
No 20
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=99.72 E-value=1.6e-15 Score=145.39 Aligned_cols=275 Identities=12% Similarity=0.091 Sum_probs=148.5
Q ss_pred CCCeEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccc--hhhHHHHHHHHHHHHH-hC
Q 039188 4 GAPFKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIA--IANASLYWDQAISPTR-AR 80 (341)
Q Consensus 4 ~~~~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~--~~~~~~~~~~~~~~l~-~~ 80 (341)
++.++|+.+.|.==+. ..-....+.|.++.++.++||||.+||.+..+-.. +..-...|..+..... .+
T Consensus 24 ~~~l~F~~vGDwG~g~--------~~Q~~VA~~M~~~~~~~~~~FVls~GDNF~~Gv~sv~Dp~f~~~FE~vY~~~s~~L 95 (394)
T PTZ00422 24 KAQLRFASLGNWGTGS--------KQQKLVASYLKQYAKNERVTFLVSPGSNFPGGVDGLNDPKWKHCFENVYSEESGDM 95 (394)
T ss_pred CCeEEEEEEecCCCCc--------hhHHHHHHHHHHHHHhCCCCEEEECCccccCCCCCccchhHHhhHhhhccCcchhh
Confidence 5678899988874221 11223455666666778999999999998533221 1222233444444332 26
Q ss_pred CCCEEEEcCCCCCCCccccccccCCCCCCcccCCCCCCCCCCCccccccCCCchHHHhHHhhhccccc-cccCCCCCCCC
Q 039188 81 GIPWASVFGNHDDAAFEWPLEWLSSPGIPQLRCPTEANSSYSGEEECDFRGTPHLELMKKEIDHNVLS-HSKKGPKDLWP 159 (341)
Q Consensus 81 ~iP~~~i~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~r~~~~~~~~~~~~~s-~~~~~p~~~~~ 159 (341)
++||+.|+||||.... .. .++.... + ..+++.++.++ -|+ -+...|+ |.
T Consensus 96 ~~Pwy~vLGNHDy~Gn-~~------AQi~r~~-----~--------~y~~~~~~~~~--------~y~~~~~~~~R--W~ 145 (394)
T PTZ00422 96 QIPFFTVLGQADWDGN-YN------AELLKGQ-----N--------VYLNGHGQTDI--------EYDSNNDIYPK--WI 145 (394)
T ss_pred CCCeEEeCCcccccCC-ch------hhhcccc-----c--------ccccccccccc--------ccccccccCCC--cc
Confidence 7999999999998641 00 0000000 0 00000000000 000 0111222 22
Q ss_pred CccceEEEe---ecCC-------CCCCceEEEEEEeCCC--CCC-CCCCCHHHHHHHHHHhhhhCCCCCCCcEEEEecCc
Q 039188 160 SISNYVLNV---SSSH-------DPNIAVAYLYFLDSGG--GSY-PQVISSEQAEWFLHKAQEINPDSRVPEIVFWHIPS 226 (341)
Q Consensus 160 g~~~y~l~~---~~~~-------~~~~~~~~l~~LDS~~--~~~-~~~i~~~Ql~WL~~~L~~~~~~~~~~~ivf~H~Pl 226 (341)
.+..|+-.. .... +.....+.++|+||.. ..+ .....+.|.+||+++|+.+.+. ..++||+.|||+
T Consensus 146 mP~~yY~~~~~f~~~~~~~~~~~~~~~~~v~fifiDT~~l~~~~~~~~~~~~~w~~L~~~L~~a~k~-a~WkIVvGHhPI 224 (394)
T PTZ00422 146 MPNYWYHYFTHFTDTSGPSLLKSGHKDMSVAFIFIDTWILSSSFPYKKVSERAWQDLKATLEYAPKI-ADYIIVVGDKPI 224 (394)
T ss_pred CCchhheeeeeeecccccccccccCCCCEEEEEEEECchhcccCCccccCHHHHHHHHHHHHhhccC-CCeEEEEecCce
Confidence 223222110 0000 0012457899999963 111 1235788999999999765432 358999999999
Q ss_pred hhhhhhcCCCCCCCCccCccCCcccchhhccchHHHHHHcCCCceEEEeccccCCCcccccCCeEEEeecCccCCCC---
Q 039188 227 KAYEKVAPKSAIERPCVGSINKESVAAQEAEMGIMDILVNRSSVKAVFAGHNHGLDWCCPYQRLWLCYARHSGYGGY--- 303 (341)
Q Consensus 227 ~~~~~~~~~~~~~~~~~g~~n~e~~~~~~~~~~~~~~l~~~~~V~~v~~GH~H~n~~~~~~~gi~l~~g~~tg~~~~--- 303 (341)
...... |. + . .....+..+|. .++|.+++|||+|.-... ...|+.++.+++.|....
T Consensus 225 ySsG~h-----------g~-~-~-----~L~~~L~PLL~-ky~VdlYisGHDH~lq~i-~~~gt~yIvSGaGs~~~~~~~ 284 (394)
T PTZ00422 225 YSSGSS-----------KG-D-S-----YLSYYLLPLLK-DAQVDLYISGYDRNMEVL-TDEGTAHINCGSGGNSGRKSI 284 (394)
T ss_pred eecCCC-----------CC-C-H-----HHHHHHHHHHH-HcCcCEEEEccccceEEe-cCCCceEEEeCccccccCCCC
Confidence 753321 10 0 0 01134555554 469999999999976543 457888777766543111
Q ss_pred --------CCCCCceEEEEEecCCCceeEEEEc-cCCcEeeeeee
Q 039188 304 --------GDWARGARILEITEKPFSLKSWIRM-EDGAVHSQVTL 339 (341)
Q Consensus 304 --------~~~~~g~Rii~l~~~~~~~~t~~r~-~~g~~~~~~~~ 339 (341)
.....|.-.++++.+ .+..-... .+|++....+.
T Consensus 285 ~~~~~s~F~~~~~GF~~~~l~~~--~l~~~fid~~~GkvL~~~~~ 327 (394)
T PTZ00422 285 MKNSKSLFYSEDIGFCIHELNAE--GMVTKFVSGNTGEVLYTHKQ 327 (394)
T ss_pred CCCCCcceecCCCCEEEEEEecC--EEEEEEEeCCCCcEEEEeee
Confidence 122467777777643 55554443 67877776654
No 21
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.67 E-value=8e-17 Score=135.33 Aligned_cols=77 Identities=25% Similarity=0.393 Sum_probs=53.8
Q ss_pred eEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHH--HHHHHHhCCCCE
Q 039188 7 FKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQ--AISPTRARGIPW 84 (341)
Q Consensus 7 ~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~--~~~~l~~~~iP~ 84 (341)
|||+++||+|++.... .. ....+.......+||+||++||++++..... ..... .........+|+
T Consensus 1 ~ri~~isD~H~~~~~~-------~~-~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 68 (200)
T PF00149_consen 1 MRILVISDLHGGYDDD-------SD-AFRKLDEIAAENKPDFIIFLGDLVDGGNPSE----EWRAQFWFFIRLLNPKIPV 68 (200)
T ss_dssp EEEEEEEBBTTTHHHH-------CH-HHHHHHHHHHHTTTSEEEEESTSSSSSSHHH----HHHHHHHHHHHHHHTTTTE
T ss_pred CeEEEEcCCCCCCcch-------hH-HHHHHHHHhccCCCCEEEeeccccccccccc----cchhhhccchhhhhccccc
Confidence 7999999999986421 01 2344555556679999999999999887421 11111 244556789999
Q ss_pred EEEcCCCCCCC
Q 039188 85 ASVFGNHDDAA 95 (341)
Q Consensus 85 ~~i~GNHD~~~ 95 (341)
++++||||...
T Consensus 69 ~~~~GNHD~~~ 79 (200)
T PF00149_consen 69 YFILGNHDYYS 79 (200)
T ss_dssp EEEE-TTSSHH
T ss_pred cccccccccce
Confidence 99999999974
No 22
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.65 E-value=2.1e-15 Score=135.01 Aligned_cols=87 Identities=22% Similarity=0.270 Sum_probs=54.1
Q ss_pred EEEEEecCCCCcCCCCCCCCCCChhHHHHHHH---HHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCE
Q 039188 8 KIVLFADLHFGESAWTDWGPLQDVNSSRVMST---VLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPW 84 (341)
Q Consensus 8 ~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~---~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~ 84 (341)
||+|+||+|++................+.+++ .+.+.+||+||++||+++...... .....+.+.++.+.+.++|+
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v 79 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVDFVLIAGDLFDSNNPSP-EALELLIEALRRLKEAGIPV 79 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCCEEEECCcccCCCCCCH-HHHHHHHHHHHHHHHCCCCE
Confidence 69999999999753211000011223334444 445679999999999999764221 11222334444444458999
Q ss_pred EEEcCCCCCCC
Q 039188 85 ASVFGNHDDAA 95 (341)
Q Consensus 85 ~~i~GNHD~~~ 95 (341)
++++||||...
T Consensus 80 ~~~~GNHD~~~ 90 (223)
T cd00840 80 FIIAGNHDSPS 90 (223)
T ss_pred EEecCCCCCcc
Confidence 99999999975
No 23
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=99.64 E-value=1e-15 Score=131.57 Aligned_cols=69 Identities=16% Similarity=0.101 Sum_probs=45.2
Q ss_pred EEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEc
Q 039188 9 IVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVF 88 (341)
Q Consensus 9 i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~ 88 (341)
|+++||+|++..... . .+.+.+.+.+||+|+++||+++.... .... . +........|+++++
T Consensus 1 ~~~iSDlH~~~~~~~--------~---~~~~~~~~~~~d~li~~GDi~~~~~~-----~~~~-~-~~~~~~~~~~v~~v~ 62 (166)
T cd07404 1 IQYLSDLHLEFEDNL--------A---DLLNFPIAPDADILVLAGDIGYLTDA-----PRFA-P-LLLALKGFEPVIYVP 62 (166)
T ss_pred CceEccccccCcccc--------c---cccccCCCCCCCEEEECCCCCCCcch-----HHHH-H-HHHhhcCCccEEEeC
Confidence 579999999753210 0 11123345689999999999987642 1111 1 223344678999999
Q ss_pred CCCCCCC
Q 039188 89 GNHDDAA 95 (341)
Q Consensus 89 GNHD~~~ 95 (341)
||||...
T Consensus 63 GNHD~~~ 69 (166)
T cd07404 63 GNHEFYV 69 (166)
T ss_pred CCcceEE
Confidence 9999963
No 24
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.60 E-value=1.2e-14 Score=121.75 Aligned_cols=79 Identities=24% Similarity=0.242 Sum_probs=48.9
Q ss_pred EEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEc
Q 039188 9 IVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVF 88 (341)
Q Consensus 9 i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~ 88 (341)
|+|+||+|++...... .......++.+.+.+++.+||+|+++||+++.... +....+.++++.+....+|+++++
T Consensus 1 il~isD~Hl~~~~~~~--~~~~~~~l~~~~~~~~~~~~d~vi~~GDl~~~~~~---~~~~~~~~~~~~l~~~~~~~~~v~ 75 (144)
T cd07400 1 ILHLSDLHFGPERKPE--LLALLSLLDRLLAEIKALDPDLVVITGDLTQRGLP---EEFEEAREFLDALPAPLEPVLVVP 75 (144)
T ss_pred CeEeCccCCCCCcchh--HHHHHHHHHHHHHHHhccCCCEEEECCCCCCCCCH---HHHHHHHHHHHHccccCCcEEEeC
Confidence 6899999998753110 00011113334555667799999999999997652 112223344444443335999999
Q ss_pred CCCC
Q 039188 89 GNHD 92 (341)
Q Consensus 89 GNHD 92 (341)
||||
T Consensus 76 GNHD 79 (144)
T cd07400 76 GNHD 79 (144)
T ss_pred CCCe
Confidence 9996
No 25
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.60 E-value=1.3e-13 Score=123.99 Aligned_cols=72 Identities=8% Similarity=0.092 Sum_probs=54.2
Q ss_pred CeEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEE
Q 039188 6 PFKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWA 85 (341)
Q Consensus 6 ~~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~ 85 (341)
..||+.+||+|-. ...++.+.+.+++.++|+||++||+++.... .+.+..+++.+.++++|++
T Consensus 4 ~~kIl~iSDiHgn------------~~~le~l~~~~~~~~~D~vv~~GDl~~~g~~-----~~~~~~~l~~l~~l~~pv~ 66 (224)
T cd07388 4 VRYVLATSNPKGD------------LEALEKLVGLAPETGADAIVLIGNLLPKAAK-----SEDYAAFFRILGEAHLPTF 66 (224)
T ss_pred eeEEEEEEecCCC------------HHHHHHHHHHHhhcCCCEEEECCCCCCCCCC-----HHHHHHHHHHHHhcCCceE
Confidence 4689999999942 1234445555556789999999999997631 2234577777888889999
Q ss_pred EEcCCCCCC
Q 039188 86 SVFGNHDDA 94 (341)
Q Consensus 86 ~i~GNHD~~ 94 (341)
+++||||..
T Consensus 67 ~V~GNhD~~ 75 (224)
T cd07388 67 YVPGPQDAP 75 (224)
T ss_pred EEcCCCChH
Confidence 999999986
No 26
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=99.59 E-value=2.4e-13 Score=130.90 Aligned_cols=256 Identities=18% Similarity=0.232 Sum_probs=149.9
Q ss_pred CCeEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCE
Q 039188 5 APFKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPW 84 (341)
Q Consensus 5 ~~~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~ 84 (341)
-+.+++++.|+=..... ..++.... ...+||+|++.|||........ ..-+.|.+.++++. ..+|+
T Consensus 146 ~~~~~~i~GDlG~~~~~---------~s~~~~~~---~~~k~d~vlhiGDlsYa~~~~n-~~wD~f~r~vEp~A-s~vPy 211 (452)
T KOG1378|consen 146 SPTRAAIFGDMGCTEPY---------TSTLRNQE---ENLKPDAVLHIGDLSYAMGYSN-WQWDEFGRQVEPIA-SYVPY 211 (452)
T ss_pred CceeEEEEccccccccc---------cchHhHHh---cccCCcEEEEecchhhcCCCCc-cchHHHHhhhhhhh-ccCce
Confidence 45777777776554321 11222211 2237999999999998554321 12345667778876 58999
Q ss_pred EEEcCCCCCCCccccccccCCCCCCcccCCCCCCCCCCCccccccCCC-chHHHhHHhhhccccccccCCCCCCCCCccc
Q 039188 85 ASVFGNHDDAAFEWPLEWLSSPGIPQLRCPTEANSSYSGEEECDFRGT-PHLELMKKEIDHNVLSHSKKGPKDLWPSISN 163 (341)
Q Consensus 85 ~~i~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~r~~~~~~~~~~~~~s~~~~~p~~~~~g~~~ 163 (341)
.++.|||+..... .+ .|... .|.. -.+...+. .....
T Consensus 212 mv~~GNHE~d~~~--------~~--------------------~F~~y~~Rf~----------mP~~~s~s----~~~l~ 249 (452)
T KOG1378|consen 212 MVCSGNHEIDWPP--------QP--------------------CFVPYSARFN----------MPGNSSES----DSNLY 249 (452)
T ss_pred EEecccccccCCC--------cc--------------------cccccceeec----------cCCCcCCC----CCcee
Confidence 9999999998410 00 02111 0110 00000000 11234
Q ss_pred eEEEeecCCCCCCceEEEEEEeCCCCCCCCCCCHHHHHHHHHHhhhhCCCCCCCcEEEEecCchhhhhhcCCCCCCCCcc
Q 039188 164 YVLNVSSSHDPNIAVAYLYFLDSGGGSYPQVISSEQAEWFLHKAQEINPDSRVPEIVFWHIPSKAYEKVAPKSAIERPCV 243 (341)
Q Consensus 164 y~l~~~~~~~~~~~~~~l~~LDS~~~~~~~~i~~~Ql~WL~~~L~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~~~~~~ 243 (341)
|.+.+. .+++++|+|-.+. .-....+|-+||++.|++.++.+..++|+++|.|+.-..... ....
T Consensus 250 YSfd~G--------~vhfv~lsse~~~-~~~~~~~QY~WL~~dL~~v~r~~tPWlIv~~HrP~Y~S~~~~------~~re 314 (452)
T KOG1378|consen 250 YSFDVG--------GVHFVVLSTETYY-NFLKGTAQYQWLERDLASVDRKKTPWLIVQGHRPMYCSSNDA------HYRE 314 (452)
T ss_pred EEEeec--------cEEEEEEeccccc-cccccchHHHHHHHHHHHhcccCCCeEEEEecccceecCCch------hhcc
Confidence 666553 4889999997532 223568899999999999876435679999999996432200 0011
Q ss_pred CccCCcccchhhccchHHHHHHcCCCceEEEeccccCCCcccccC------------------CeEEEeecCcc------
Q 039188 244 GSINKESVAAQEAEMGIMDILVNRSSVKAVFAGHNHGLDWCCPYQ------------------RLWLCYARHSG------ 299 (341)
Q Consensus 244 g~~n~e~~~~~~~~~~~~~~l~~~~~V~~v~~GH~H~n~~~~~~~------------------gi~l~~g~~tg------ 299 (341)
|.. +. . ..-|+.|.-..+|..+|.||.|.+....... .|.+..|.+.+
T Consensus 315 G~~--~~-----~-~~~LE~l~~~~~VDvvf~GHvH~YER~~piyn~~~~~~~~~~~~~d~~aPvyI~~G~~G~~e~~~~ 386 (452)
T KOG1378|consen 315 GEF--ES-----M-REGLEPLFVKYKVDVVFWGHVHRYERFCPIYNNTCGTGWGPVHLVDGMAPIYITVGDGGNHEHLDP 386 (452)
T ss_pred Ccc--hh-----h-HHHHHHHHHHhceeEEEeccceehhccchhhcceeeccCCcccccCCCCCEEEEEccCCcccccCc
Confidence 211 00 0 1235555545799999999999865432222 23444443222
Q ss_pred -------CCCCCCCCCceEEEEEecCCCceeEEEEcc-C-CcEeeeeee
Q 039188 300 -------YGGYGDWARGARILEITEKPFSLKSWIRME-D-GAVHSQVTL 339 (341)
Q Consensus 300 -------~~~~~~~~~g~Rii~l~~~~~~~~t~~r~~-~-g~~~~~~~~ 339 (341)
++.+.+..-|+-++++.......-+|.|+. + |++.+.+.|
T Consensus 387 ~~~~~p~~Sa~R~~dfG~~~L~v~N~TH~~~~~~~~~d~~g~~~D~fwl 435 (452)
T KOG1378|consen 387 FSSPQPEWSAFREGDFGYTRLTAKNGTHAHVHWVRNSDASGVVIDSFWL 435 (452)
T ss_pred ccCCCCcccccccccCCeEEEEEecCceEEEEEEeccCCCceEeeeEEE
Confidence 123345578999999987666777899983 3 678777765
No 27
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.49 E-value=8.1e-13 Score=122.67 Aligned_cols=78 Identities=27% Similarity=0.414 Sum_probs=53.2
Q ss_pred CCeEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCE
Q 039188 5 APFKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPW 84 (341)
Q Consensus 5 ~~~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~ 84 (341)
.++||+++||+|++... ....++.+.+.+++.+||+|+++||+++..... ....+.++++.+.. ..|+
T Consensus 48 ~~~rI~~lSDlH~~~~~--------~~~~l~~~v~~i~~~~pDlVli~GD~~d~~~~~---~~~~~~~~L~~L~~-~~pv 115 (271)
T PRK11340 48 APFKILFLADLHYSRFV--------PLSLISDAIALGIEQKPDLILLGGDYVLFDMPL---NFSAFSDVLSPLAE-CAPT 115 (271)
T ss_pred CCcEEEEEcccCCCCcC--------CHHHHHHHHHHHHhcCCCEEEEccCcCCCCccc---cHHHHHHHHHHHhh-cCCE
Confidence 45999999999997421 122344455556678999999999999832211 11223455555554 4799
Q ss_pred EEEcCCCCCC
Q 039188 85 ASVFGNHDDA 94 (341)
Q Consensus 85 ~~i~GNHD~~ 94 (341)
++|+||||..
T Consensus 116 ~~V~GNHD~~ 125 (271)
T PRK11340 116 FACFGNHDRP 125 (271)
T ss_pred EEecCCCCcc
Confidence 9999999986
No 28
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=99.49 E-value=4.2e-13 Score=114.36 Aligned_cols=85 Identities=24% Similarity=0.284 Sum_probs=53.1
Q ss_pred EEEecCCCCcCCCCCCCC--CCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhh-HHHHHHHHHHHHHh-CCCCEE
Q 039188 10 VLFADLHFGESAWTDWGP--LQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIAN-ASLYWDQAISPTRA-RGIPWA 85 (341)
Q Consensus 10 ~~isDlH~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~-~~~~~~~~~~~l~~-~~iP~~ 85 (341)
+++||+|++......+-+ ..+....+.+++++++.+||+||++||+++.......+ ....+.++.+.+.. .++|++
T Consensus 1 ~~isD~HL~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (156)
T cd08165 1 MFLADTHLLGSILGHWLDKLRREWQMERSFQTSLWLLQPDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLH 80 (156)
T ss_pred CccccchhcCCcccHHHHHHhhhHHHHHHHHHHHHhcCCCEEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEE
Confidence 478999996532110000 12223455777888889999999999999865432111 11223334333332 368999
Q ss_pred EEcCCCCCC
Q 039188 86 SVFGNHDDA 94 (341)
Q Consensus 86 ~i~GNHD~~ 94 (341)
+|+||||..
T Consensus 81 ~v~GNHD~~ 89 (156)
T cd08165 81 VVVGNHDIG 89 (156)
T ss_pred EEcCCCCcC
Confidence 999999996
No 29
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=99.48 E-value=6e-12 Score=122.35 Aligned_cols=84 Identities=24% Similarity=0.361 Sum_probs=55.7
Q ss_pred CCeEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHH---HhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHh--
Q 039188 5 APFKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTV---LDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRA-- 79 (341)
Q Consensus 5 ~~~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~---l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~-- 79 (341)
+.+||+|+||+|+|.... .+....+..+.++++ +.+++||+||++|||++....+. ..+.++++.|.+
T Consensus 2 ~~mKIlh~SD~HlG~~~~---~~~r~~D~~~~f~eil~~a~~~~vD~VLiaGDLFd~~~Ps~----~~~~~~~~~lr~~~ 74 (405)
T TIGR00583 2 DTIRILVSTDNHVGYGEN---DPVRGDDSWNTFEEVLQIAKEQDVDMILLGGDLFHENKPSR----KSLYQVLRSLRLYC 74 (405)
T ss_pred CceEEEEEcCCCCCCccC---CchhhhhHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCH----HHHHHHHHHHHHhh
Confidence 569999999999986421 122222334444444 45679999999999999876432 112233333322
Q ss_pred ----------------------------------CCCCEEEEcCCCCCCC
Q 039188 80 ----------------------------------RGIPWASVFGNHDDAA 95 (341)
Q Consensus 80 ----------------------------------~~iP~~~i~GNHD~~~ 95 (341)
.++|+++|.||||...
T Consensus 75 ~g~~p~~~~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p~ 124 (405)
T TIGR00583 75 LGDKPCELEFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDPS 124 (405)
T ss_pred ccCCccchhhccchhhhcccccccccccccccccCCCCEEEEcCCCCCcc
Confidence 4799999999999984
No 30
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.47 E-value=1.3e-12 Score=117.24 Aligned_cols=77 Identities=19% Similarity=0.290 Sum_probs=53.8
Q ss_pred CeEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEE
Q 039188 6 PFKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWA 85 (341)
Q Consensus 6 ~~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~ 85 (341)
.+||+++||+|++... ....++.+.+.+.+.+||+|+++||+++..... ...+.++++.+. ..+|++
T Consensus 1 ~~~i~~~sDlH~~~~~--------~~~~~~~~~~~~~~~~~d~vl~~GD~~~~~~~~----~~~~~~~l~~l~-~~~~v~ 67 (223)
T cd07385 1 GLRIAHLSDLHLGPFV--------SRERLERLVEKINALKPDLVVLTGDLVDGSVDV----LELLLELLKKLK-APLGVY 67 (223)
T ss_pred CCEEEEEeecCCCccC--------CHHHHHHHHHHHhccCCCEEEEcCcccCCcchh----hHHHHHHHhccC-CCCCEE
Confidence 4799999999997532 123445555556677999999999999977532 112233443332 368999
Q ss_pred EEcCCCCCCC
Q 039188 86 SVFGNHDDAA 95 (341)
Q Consensus 86 ~i~GNHD~~~ 95 (341)
+++||||...
T Consensus 68 ~v~GNHD~~~ 77 (223)
T cd07385 68 AVLGNHDYYS 77 (223)
T ss_pred EECCCccccc
Confidence 9999999974
No 31
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=8.5e-13 Score=118.27 Aligned_cols=83 Identities=19% Similarity=0.233 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHhhhhCCCCCCCcEEEEecCchhhhhhcCCCCCCCCccCccCCcccchhhccchHHHHHHcCCCceEEE
Q 039188 195 ISSEQAEWFLHKAQEINPDSRVPEIVFWHIPSKAYEKVAPKSAIERPCVGSINKESVAAQEAEMGIMDILVNRSSVKAVF 274 (341)
Q Consensus 195 i~~~Ql~WL~~~L~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~~~~~~g~~n~e~~~~~~~~~~~~~~l~~~~~V~~v~ 274 (341)
+-..++.||+..|++..+ +..||..|||+...... |. - .+-+.+++-+|.+ .+|.+.+
T Consensus 191 ~~~~~l~~le~~L~~S~a---~wkiVvGHh~i~S~~~H-----------G~--T-----~eL~~~LlPiL~~-n~VdlY~ 248 (336)
T KOG2679|consen 191 YLRALLSWLEVALKASRA---KWKIVVGHHPIKSAGHH-----------GP--T-----KELEKQLLPILEA-NGVDLYI 248 (336)
T ss_pred HHHHHHHHHHHHHHHhhc---ceEEEecccceehhhcc-----------CC--h-----HHHHHHHHHHHHh-cCCcEEE
Confidence 557789999999998764 58999999999643321 21 0 0113566776654 7999999
Q ss_pred eccccCCCcccc-cCCeEEEeecCcc
Q 039188 275 AGHNHGLDWCCP-YQRLWLCYARHSG 299 (341)
Q Consensus 275 ~GH~H~n~~~~~-~~gi~l~~g~~tg 299 (341)
|||+|.-..... -.+|+++.+++.+
T Consensus 249 nGHDHcLQhis~~e~~iqf~tSGagS 274 (336)
T KOG2679|consen 249 NGHDHCLQHISSPESGIQFVTSGAGS 274 (336)
T ss_pred ecchhhhhhccCCCCCeeEEeeCCcc
Confidence 999997544333 5788888766544
No 32
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.44 E-value=2.7e-13 Score=114.41 Aligned_cols=55 Identities=27% Similarity=0.379 Sum_probs=40.7
Q ss_pred HHHHHHcCCCceEEEeccccCCCcccccCCeEEEeecCccCCCCCCCCCceEEEEEec
Q 039188 260 IMDILVNRSSVKAVFAGHNHGLDWCCPYQRLWLCYARHSGYGGYGDWARGARILEITE 317 (341)
Q Consensus 260 ~~~~l~~~~~V~~v~~GH~H~n~~~~~~~gi~l~~g~~tg~~~~~~~~~g~Rii~l~~ 317 (341)
+.+.+. ..+++++++||.|.... ...+|+.+++.++.+....++ .+++-++++.+
T Consensus 101 ~~~~~~-~~~~~~~~~GH~H~~~~-~~~~~~~~~~~Gs~~~~~~~~-~~~~~i~~~~~ 155 (156)
T PF12850_consen 101 LREILS-RENVDLVLHGHTHRPQV-FKIGGIHVINPGSIGGPRHGD-QSGYAILDIED 155 (156)
T ss_dssp HHHHHH-HTTSSEEEESSSSSEEE-EEETTEEEEEE-GSSS-SSSS-SEEEEEEEETT
T ss_pred hhhhhc-ccCCCEEEcCCcccceE-EEECCEEEEECCcCCCCCCCC-CCEEEEEEEec
Confidence 445554 57999999999999653 447899999888887655555 88999999864
No 33
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=99.34 E-value=6.1e-11 Score=117.13 Aligned_cols=230 Identities=15% Similarity=0.152 Sum_probs=125.7
Q ss_pred CCCEEEEeCcccCCCccch--hhHHHHHHHHHHHHHhC--CCCEEEEcCCCCCCCccccccccCCCCCCcccCCCCCCCC
Q 039188 45 APGLVIYLGDVITANNIAI--ANASLYWDQAISPTRAR--GIPWASVFGNHDDAAFEWPLEWLSSPGIPQLRCPTEANSS 120 (341)
Q Consensus 45 ~pD~vv~tGDl~~~~~~~~--~~~~~~~~~~~~~l~~~--~iP~~~i~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (341)
.+|+|+.|||.+....+.. ++....+.++.+.|.+. ++|+|...||||.-..+ .+. +..
T Consensus 210 ~iD~I~wTGD~~~H~~w~~t~~~~l~~~~~l~~~~~e~FpdvpvypalGNhe~~P~N----~F~-----~~~-------- 272 (577)
T KOG3770|consen 210 DIDYIIWTGDNVAHDVWAQTEEENLSMLSRLTSLLSEYFPDVPVYPALGNHEIHPVN----LFA-----PGS-------- 272 (577)
T ss_pred CCCEEEEeCCCCcccchhhhHHHHHHHHHHHHHHHHHhCCCCceeeecccCCCCcHh----hcC-----CCC--------
Confidence 3899999999997544321 12223455666666553 89999999999997421 010 000
Q ss_pred CCCccccccCCCchHHHhHHhhhccccccccCCCCCCCCCccceEEEeecCCCCCCceEEEEEEeCCCC-CCCCC-----
Q 039188 121 YSGEEECDFRGTPHLELMKKEIDHNVLSHSKKGPKDLWPSISNYVLNVSSSHDPNIAVAYLYFLDSGGG-SYPQV----- 194 (341)
Q Consensus 121 ~~~~~~~~f~~~~r~~~~~~~~~~~~~s~~~~~p~~~~~g~~~y~l~~~~~~~~~~~~~~l~~LDS~~~-~~~~~----- 194 (341)
.+. . .+..+ -.+.+...- +...+.... +-+.-.+.|...+. ++++++.||+.-- ....|
T Consensus 273 ~~~--~-~~~~w-ly~~~~~~W-~~wlp~e~~---~t~~kga~Y~~~~~-------~Glr~IslNt~~c~~~N~~L~~n~ 337 (577)
T KOG3770|consen 273 VPK--R-HSQLW-LYKHLAGAW-STWLPAEAK---ETFLKGAYYLVLVI-------DGLRLISLNTNYCSAPNFWLYANQ 337 (577)
T ss_pred Ccc--h-hhhhH-HHHHHHhhh-hccCCHHHH---hhhhcCcEEEEeec-------CCceEEEeccccccccceeeeecC
Confidence 000 0 00000 001111100 011111100 11112244555443 4589999999742 22222
Q ss_pred -CCHHHHHHHHHHhhhhCCCCCCCcEEEEecCchhhhhhcCCCCCCCCccCccCCcccchhhccchHHHHHHcCC-CceE
Q 039188 195 -ISSEQAEWFLHKAQEINPDSRVPEIVFWHIPSKAYEKVAPKSAIERPCVGSINKESVAAQEAEMGIMDILVNRS-SVKA 272 (341)
Q Consensus 195 -i~~~Ql~WL~~~L~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~~~~~~g~~n~e~~~~~~~~~~~~~~l~~~~-~V~~ 272 (341)
--.+|++||..+|.+++.. +..+-+..|+|+-.. .+.-.|. ..+...+.+.. -|.+
T Consensus 338 tdp~~~lqWf~~~L~~ae~~-GekVhil~HIPpG~~-----------~c~~~ws----------~~f~~iv~r~~~tI~g 395 (577)
T KOG3770|consen 338 TDPIDQLQWFVDQLQEAESA-GEKVHILGHIPPGDG-----------VCLEGWS----------INFYRIVNRFRSTIAG 395 (577)
T ss_pred CCchHHhhHHHHHHHHHHhc-CCEEEEEEeeCCCCc-----------chhhhhh----------HHHHHHHHHHHHhhhh
Confidence 2456899999999999864 457999999999631 1111232 24666665543 4778
Q ss_pred EEeccccCCCcccccCCe---EEEee-cCccCCCCCCCCCceEEEEEecCC----CceeEEEEc
Q 039188 273 VFAGHNHGLDWCCPYQRL---WLCYA-RHSGYGGYGDWARGARILEITEKP----FSLKSWIRM 328 (341)
Q Consensus 273 v~~GH~H~n~~~~~~~gi---~l~~g-~~tg~~~~~~~~~g~Rii~l~~~~----~~~~t~~r~ 328 (341)
.|.||.|...|...++-- .+... -+.+...|-...+|+|+.+++... -.++||.++
T Consensus 396 qf~GH~h~d~f~v~yde~~~~p~~v~~i~~svtty~~~~p~yr~y~~~~~~~~~~~d~~ty~~N 459 (577)
T KOG3770|consen 396 QFYGHTHIDEFRVFYDEETGHPIAVAYIGPSVTTYYNKNPGYRIYAVDSTISFSVPDHRTYFYN 459 (577)
T ss_pred hccccCcceeEEEEeccccCCceeeeeccccceehhccCCCceecccCcccceecccceEEEEe
Confidence 999999998765444321 11111 111223445668999999998321 456788766
No 34
>PRK09453 phosphodiesterase; Provisional
Probab=99.32 E-value=1.2e-10 Score=101.66 Aligned_cols=76 Identities=16% Similarity=0.128 Sum_probs=51.4
Q ss_pred eEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEE
Q 039188 7 FKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWAS 86 (341)
Q Consensus 7 ~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~ 86 (341)
+||+++||+|... ..++.+.+.+++.+||.|+++||+++..............++++.+.+.+.|+++
T Consensus 1 mri~viSD~Hg~~------------~~~~~~l~~~~~~~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~ 68 (182)
T PRK09453 1 MKLMFASDTHGSL------------PATEKALELFAQSGADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAYADKIIA 68 (182)
T ss_pred CeEEEEEeccCCH------------HHHHHHHHHHHhcCCCEEEEcccccccCcCCCCccccCHHHHHHHHHhcCCceEE
Confidence 5899999999531 1234455556667999999999999854311000000123566666777789999
Q ss_pred EcCCCCCC
Q 039188 87 VFGNHDDA 94 (341)
Q Consensus 87 i~GNHD~~ 94 (341)
|+||||..
T Consensus 69 V~GNhD~~ 76 (182)
T PRK09453 69 VRGNCDSE 76 (182)
T ss_pred EccCCcch
Confidence 99999975
No 35
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.28 E-value=9.5e-12 Score=114.33 Aligned_cols=88 Identities=19% Similarity=0.217 Sum_probs=60.3
Q ss_pred eEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCC-CCEE
Q 039188 7 FKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARG-IPWA 85 (341)
Q Consensus 7 ~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~-iP~~ 85 (341)
|||+|+||+|++...............++.+.+.+.+++||+||++||+++...... .....+.++++.|.+.+ +|++
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~lli~GDi~d~~~p~~-~~~~~~~~~l~~l~~~~~i~v~ 79 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQIDALLVAGDVFDTANPPA-EAQELFNAFFRNLSDANPIPIV 79 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCH-HHHHHHHHHHHHHHhcCCceEE
Confidence 689999999998743110000001124455555556789999999999999775432 22334567777787776 9999
Q ss_pred EEcCCCCCCC
Q 039188 86 SVFGNHDDAA 95 (341)
Q Consensus 86 ~i~GNHD~~~ 95 (341)
+++||||...
T Consensus 80 ~i~GNHD~~~ 89 (253)
T TIGR00619 80 VISGNHDSAQ 89 (253)
T ss_pred EEccCCCChh
Confidence 9999999974
No 36
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=99.27 E-value=3.1e-10 Score=102.49 Aligned_cols=64 Identities=25% Similarity=0.351 Sum_probs=46.8
Q ss_pred eEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEE
Q 039188 7 FKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWAS 86 (341)
Q Consensus 7 ~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~ 86 (341)
+||+++||+|.... . ...+.+++.+||+||++||+++.. .++++.+.++..|+++
T Consensus 1 ~rIa~isDiHg~~~----------~----~~~~~l~~~~pD~Vl~~GDi~~~~-----------~~~~~~l~~l~~p~~~ 55 (238)
T cd07397 1 LRIAIVGDVHGQWD----------L----EDIKALHLLQPDLVLFVGDFGNES-----------VQLVRAISSLPLPKAV 55 (238)
T ss_pred CEEEEEecCCCCch----------H----HHHHHHhccCCCEEEECCCCCcCh-----------HHHHHHHHhCCCCeEE
Confidence 68999999996421 0 112345667899999999998542 1455556667789999
Q ss_pred EcCCCCCCC
Q 039188 87 VFGNHDDAA 95 (341)
Q Consensus 87 i~GNHD~~~ 95 (341)
++||||...
T Consensus 56 V~GNHD~~~ 64 (238)
T cd07397 56 ILGNHDAWY 64 (238)
T ss_pred EcCCCcccc
Confidence 999999864
No 37
>PHA02546 47 endonuclease subunit; Provisional
Probab=99.26 E-value=1.2e-11 Score=118.39 Aligned_cols=85 Identities=21% Similarity=0.255 Sum_probs=57.5
Q ss_pred eEEEEEecCCCCcCCCCCCCCCCC---hhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHH-HHHHHHhCCC
Q 039188 7 FKIVLFADLHFGESAWTDWGPLQD---VNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQ-AISPTRARGI 82 (341)
Q Consensus 7 ~~i~~isDlH~~~~~~~~~~~~~~---~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~-~~~~l~~~~i 82 (341)
+||+|+||+|+|..... +... ...++.+.+.+.+++||+||++||+++............+.+ +++.+.+.++
T Consensus 1 MKilhiSD~HLG~~~~~---~~~~~~~~~~l~~ii~~a~~~~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~gi 77 (340)
T PHA02546 1 MKILLIGDQHLGVRKDD---PWFQNYQLKFIKQAIEYSKAHGITTWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEAGI 77 (340)
T ss_pred CeEEEEeeecCCCcCCC---hhhHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 69999999999964311 1111 123344444455679999999999999753322222233344 5667777899
Q ss_pred CEEEEcCCCCCC
Q 039188 83 PWASVFGNHDDA 94 (341)
Q Consensus 83 P~~~i~GNHD~~ 94 (341)
|+++++||||..
T Consensus 78 ~v~~I~GNHD~~ 89 (340)
T PHA02546 78 TLHVLVGNHDMY 89 (340)
T ss_pred eEEEEccCCCcc
Confidence 999999999985
No 38
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=99.26 E-value=3.7e-10 Score=96.23 Aligned_cols=63 Identities=22% Similarity=0.268 Sum_probs=44.9
Q ss_pred eEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhh-CCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEE
Q 039188 7 FKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDE-APGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWA 85 (341)
Q Consensus 7 ~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~ 85 (341)
+||+++||+|.... .++.+.+.++.. +||.|+++||++.. .+++.+.+.+.|++
T Consensus 1 m~i~viSD~H~~~~------------~~~~~~~~~~~~~~~d~ii~~GD~~~~-------------~~~~~l~~~~~~~~ 55 (158)
T TIGR00040 1 MKILVISDTHGPLR------------ATELPVELFNLESNVDLVIHAGDLTSP-------------FVLKEFEDLAAKVI 55 (158)
T ss_pred CEEEEEecccCCcc------------hhHhHHHHHhhccCCCEEEEcCCCCCH-------------HHHHHHHHhCCceE
Confidence 58999999996431 123444555565 89999999999821 23334445577999
Q ss_pred EEcCCCCCC
Q 039188 86 SVFGNHDDA 94 (341)
Q Consensus 86 ~i~GNHD~~ 94 (341)
+|+||||..
T Consensus 56 ~V~GN~D~~ 64 (158)
T TIGR00040 56 AVRGNNDGE 64 (158)
T ss_pred EEccCCCch
Confidence 999999985
No 39
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.24 E-value=1.7e-10 Score=95.77 Aligned_cols=62 Identities=18% Similarity=0.216 Sum_probs=44.7
Q ss_pred EEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCC-EEE
Q 039188 8 KIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIP-WAS 86 (341)
Q Consensus 8 ~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP-~~~ 86 (341)
||+++||+|.... .+...+||+||++||+++.... ..+..+++.+.+...| +++
T Consensus 1 ~i~~isD~H~~~~-------------------~~~~~~~D~vi~~GD~~~~~~~------~~~~~~~~~l~~~~~~~~~~ 55 (135)
T cd07379 1 RFVCISDTHSRHR-------------------TISIPDGDVLIHAGDLTERGTL------EELQKFLDWLKSLPHPHKIV 55 (135)
T ss_pred CEEEEeCCCCCCC-------------------cCcCCCCCEEEECCCCCCCCCH------HHHHHHHHHHHhCCCCeEEE
Confidence 5899999996421 1234689999999999987542 1234566666666666 578
Q ss_pred EcCCCCCC
Q 039188 87 VFGNHDDA 94 (341)
Q Consensus 87 i~GNHD~~ 94 (341)
++||||..
T Consensus 56 v~GNHD~~ 63 (135)
T cd07379 56 IAGNHDLT 63 (135)
T ss_pred EECCCCCc
Confidence 99999975
No 40
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=99.24 E-value=1.8e-09 Score=95.33 Aligned_cols=75 Identities=25% Similarity=0.289 Sum_probs=53.3
Q ss_pred CCeEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCccc--CCCccchhhHHHHHHHHHHHHHhCCC
Q 039188 5 APFKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVI--TANNIAIANASLYWDQAISPTRARGI 82 (341)
Q Consensus 5 ~~~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~--~~~~~~~~~~~~~~~~~~~~l~~~~i 82 (341)
.++||+++||+|-... .++.+..+....++|++|++||++ +-+.. ....+.. .++.+.+.++
T Consensus 2 ~~mkil~vtDlHg~~~------------~~~k~~~~~~~~~~D~lviaGDlt~~~~~~~--~~~~~~~--~~e~l~~~~~ 65 (226)
T COG2129 2 KKMKILAVTDLHGSED------------SLKKLLNAAADIRADLLVIAGDLTYFHFGPK--EVAEELN--KLEALKELGI 65 (226)
T ss_pred CcceEEEEeccccchH------------HHHHHHHHHhhccCCEEEEecceehhhcCch--HHHHhhh--HHHHHHhcCC
Confidence 3689999999998642 334455555566899999999999 54432 1111110 1677788899
Q ss_pred CEEEEcCCCCCCC
Q 039188 83 PWASVFGNHDDAA 95 (341)
Q Consensus 83 P~~~i~GNHD~~~ 95 (341)
|++++|||-|...
T Consensus 66 ~v~avpGNcD~~~ 78 (226)
T COG2129 66 PVLAVPGNCDPPE 78 (226)
T ss_pred eEEEEcCCCChHH
Confidence 9999999988864
No 41
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=99.23 E-value=1.9e-10 Score=101.25 Aligned_cols=77 Identities=21% Similarity=0.281 Sum_probs=50.1
Q ss_pred eEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhH--------------------
Q 039188 7 FKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANA-------------------- 66 (341)
Q Consensus 7 ~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~-------------------- 66 (341)
=||+-+||+|-. .+.+..+..++.+.+||+||++||+........+..
T Consensus 6 ~kilA~s~~~g~------------~e~l~~l~~~~~e~~~D~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~~~ 73 (255)
T PF14582_consen 6 RKILAISNFRGD------------FELLERLVEVIPEKGPDAVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEECY 73 (255)
T ss_dssp -EEEEEE--TT-------------HHHHHHHHHHHHHHT-SEEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHHHH
T ss_pred hhheeecCcchH------------HHHHHHHHhhccccCCCEEEEeccccccchhhhHHHHHhhhccCcchhhhhhhhhh
Confidence 378999999853 345677777888889999999999987664321111
Q ss_pred -HHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 039188 67 -SLYWDQAISPTRARGIPWASVFGNHDDAA 95 (341)
Q Consensus 67 -~~~~~~~~~~l~~~~iP~~~i~GNHD~~~ 95 (341)
.+.++.++..|..+++|+++||||||.+.
T Consensus 74 ~~e~~~~ff~~L~~~~~p~~~vPG~~Dap~ 103 (255)
T PF14582_consen 74 DSEALDKFFRILGELGVPVFVVPGNMDAPE 103 (255)
T ss_dssp HHHHHHHHHHHHHCC-SEEEEE--TTS-SH
T ss_pred hHHHHHHHHHHHHhcCCcEEEecCCCCchH
Confidence 12356889999999999999999999974
No 42
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=99.23 E-value=2.7e-11 Score=118.43 Aligned_cols=85 Identities=16% Similarity=0.283 Sum_probs=60.4
Q ss_pred eEEEEEecCCCCcCCCCCCCCCC---ChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCC
Q 039188 7 FKIVLFADLHFGESAWTDWGPLQ---DVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIP 83 (341)
Q Consensus 7 ~~i~~isDlH~~~~~~~~~~~~~---~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP 83 (341)
+||+|+||+|+|.... +... ....++.+.+.+.+++||+||++||+++...... .....+.+++..|.+.++|
T Consensus 1 mkilh~SDlHlG~~~~---~~~~~~~~~~~l~~l~~~i~~~~~D~viIaGDifD~~~p~~-~a~~~~~~~l~~L~~~~~~ 76 (407)
T PRK10966 1 MRILHTSDWHLGQNFY---SKSRAAEHQAFLDWLLEQVQEHQVDAIIVAGDIFDTGSPPS-YARELYNRFVVNLQQTGCQ 76 (407)
T ss_pred CEEEEEcccCCCCccc---CcccHHHHHHHHHHHHHHHHhcCCCEEEECCccccCCCCcH-HHHHHHHHHHHHHHhcCCc
Confidence 6999999999986421 1111 1123455666667789999999999999765321 2223345677778778899
Q ss_pred EEEEcCCCCCCC
Q 039188 84 WASVFGNHDDAA 95 (341)
Q Consensus 84 ~~~i~GNHD~~~ 95 (341)
+++|+||||...
T Consensus 77 v~~I~GNHD~~~ 88 (407)
T PRK10966 77 LVVLAGNHDSVA 88 (407)
T ss_pred EEEEcCCCCChh
Confidence 999999999864
No 43
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=99.20 E-value=3.1e-11 Score=117.72 Aligned_cols=86 Identities=24% Similarity=0.405 Sum_probs=59.5
Q ss_pred eEEEEEecCCCCcCCCCCCCCCCChhHHHHHHH---HHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCC
Q 039188 7 FKIVLFADLHFGESAWTDWGPLQDVNSSRVMST---VLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIP 83 (341)
Q Consensus 7 ~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~---~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP 83 (341)
+||+|+||+|+|..... .+....+..+.+.. .+.++++|+||++||+++....+. .+...+.+++..|.+.+||
T Consensus 1 mkilHtSD~HLG~~~~~--~~~r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~-~a~~~~~~~l~~l~~~~Ip 77 (390)
T COG0420 1 MKILHTSDWHLGSKQLN--LPSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSP-RALKLFLEALRRLKDAGIP 77 (390)
T ss_pred CeeEEecccccchhhcc--CccchHHHHHHHHHHHHHHHHccCCEEEEccccccCCCCCH-HHHHHHHHHHHHhccCCCc
Confidence 69999999999942211 12222223333443 445679999999999999866432 3334456667777777899
Q ss_pred EEEEcCCCCCCC
Q 039188 84 WASVFGNHDDAA 95 (341)
Q Consensus 84 ~~~i~GNHD~~~ 95 (341)
+++|+||||...
T Consensus 78 v~~I~GNHD~~~ 89 (390)
T COG0420 78 VVVIAGNHDSPS 89 (390)
T ss_pred EEEecCCCCchh
Confidence 999999999985
No 44
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=99.16 E-value=5.7e-10 Score=97.78 Aligned_cols=86 Identities=22% Similarity=0.248 Sum_probs=53.5
Q ss_pred EEEecCCCCcCCCCCC--CC----CCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccc-hhhHHHHHHHHHHHHH-hCC
Q 039188 10 VLFADLHFGESAWTDW--GP----LQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIA-IANASLYWDQAISPTR-ARG 81 (341)
Q Consensus 10 ~~isDlH~~~~~~~~~--~~----~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~-~~~~~~~~~~~~~~l~-~~~ 81 (341)
+.+||+|+-......+ +. ..+....+....+++..+||+||++|||++.+... .++..++++++...+. ..+
T Consensus 1 llvADPqllg~~~~~~~~~~~~~~~~D~yl~r~~~~a~~~l~PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~ 80 (195)
T cd08166 1 LLVADPQILGYQNENFGLGWIARWDSDRYLKKTYHLALNFVQPDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNG 80 (195)
T ss_pred CcccCccccCCCCCCccccHHHHHHHHHHHHHHHHHHHhccCCCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCC
Confidence 4689999965321110 00 01233445556666778999999999999977643 2223333444443322 347
Q ss_pred CCEEEEcCCCCCCC
Q 039188 82 IPWASVFGNHDDAA 95 (341)
Q Consensus 82 iP~~~i~GNHD~~~ 95 (341)
+|+++++||||...
T Consensus 81 ~~~~~VpGNHDIG~ 94 (195)
T cd08166 81 TKIIYLPGDNDIGG 94 (195)
T ss_pred CcEEEECCCCCcCC
Confidence 89999999999974
No 45
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=99.10 E-value=2.1e-09 Score=91.05 Aligned_cols=49 Identities=20% Similarity=0.137 Sum_probs=35.8
Q ss_pred CCCceEEEeccccCCCcccccCCeEEEeecCccCCCCCCCCCceEEEEEec
Q 039188 267 RSSVKAVFAGHNHGLDWCCPYQRLWLCYARHSGYGGYGDWARGARILEITE 317 (341)
Q Consensus 267 ~~~V~~v~~GH~H~n~~~~~~~gi~l~~g~~tg~~~~~~~~~g~Rii~l~~ 317 (341)
..++..+++||+|... ....+|+.++..++.+. +.....+++.++++++
T Consensus 100 ~~~~d~vi~GHtH~~~-~~~~~~~~~inpGs~~~-~~~~~~~~~~i~~~~~ 148 (155)
T cd00841 100 EGGADVVLYGHTHIPV-IEKIGGVLLLNPGSLSL-PRGGGPPTYAILEIDD 148 (155)
T ss_pred hcCCCEEEECcccCCc-cEEECCEEEEeCCCccC-cCCCCCCeEEEEEecC
Confidence 3578899999999975 45668888887776663 2224467888988875
No 46
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=99.08 E-value=1.6e-08 Score=88.08 Aligned_cols=65 Identities=15% Similarity=0.201 Sum_probs=45.7
Q ss_pred EEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEE
Q 039188 8 KIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASV 87 (341)
Q Consensus 8 ~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i 87 (341)
+|+++||+|++... ....+.+.+++++.++|.|+.+||++.. ++.+.+.+...|++.|
T Consensus 1 ~i~viSDtHl~~~~---------~~~~~~~~~~~~~~~~d~iih~GDi~~~-------------~~~~~l~~~~~~~~~V 58 (178)
T cd07394 1 LVLVIGDLHIPHRA---------SDLPAKFKKLLVPGKIQHVLCTGNLCSK-------------ETYDYLKTIAPDVHIV 58 (178)
T ss_pred CEEEEEecCCCCCc---------hhhHHHHHHHhccCCCCEEEECCCCCCH-------------HHHHHHHhhCCceEEE
Confidence 58999999997532 1233456677776789999999999751 2222333334589999
Q ss_pred cCCCCCC
Q 039188 88 FGNHDDA 94 (341)
Q Consensus 88 ~GNHD~~ 94 (341)
.||||..
T Consensus 59 ~GN~D~~ 65 (178)
T cd07394 59 RGDFDEN 65 (178)
T ss_pred ECCCCcc
Confidence 9999975
No 47
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.98 E-value=2.5e-09 Score=95.36 Aligned_cols=76 Identities=22% Similarity=0.277 Sum_probs=50.0
Q ss_pred EEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCC--CEEEEeCcccCCCccch--hhHHHHHHHHHHHHHhCCCCEE
Q 039188 10 VLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAP--GLVIYLGDVITANNIAI--ANASLYWDQAISPTRARGIPWA 85 (341)
Q Consensus 10 ~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~p--D~vv~tGDl~~~~~~~~--~~~~~~~~~~~~~l~~~~iP~~ 85 (341)
+.|||+|+++.. | ...+.+...+....+ |.+.+.||+++.--... .+......+.+..+.+.+.|+|
T Consensus 1 lFISDlHL~~~~-----p----~~t~~fl~Fl~~~a~~ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~a~~G~~v~ 71 (237)
T COG2908 1 LFISDLHLGPKR-----P----ALTAFFLDFLREEAAQADALYILGDIFDGWIGDDEPPQLHRQVAQKLLRLARKGTRVY 71 (237)
T ss_pred CeeeccccCCCC-----c----HHHHHHHHHHHhccccCcEEEEechhhhhhhcCCcccHHHHHHHHHHHHHHhcCCeEE
Confidence 479999999542 2 233455556666555 99999999998432111 1222223344455666799999
Q ss_pred EEcCCCCCC
Q 039188 86 SVFGNHDDA 94 (341)
Q Consensus 86 ~i~GNHD~~ 94 (341)
+++||||.-
T Consensus 72 ~i~GN~Dfl 80 (237)
T COG2908 72 YIHGNHDFL 80 (237)
T ss_pred EecCchHHH
Confidence 999999975
No 48
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=98.96 E-value=1.4e-09 Score=94.19 Aligned_cols=84 Identities=21% Similarity=0.277 Sum_probs=55.2
Q ss_pred EEEecCCCCcCCC-CCCC---CC-CChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCE
Q 039188 10 VLFADLHFGESAW-TDWG---PL-QDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPW 84 (341)
Q Consensus 10 ~~isDlH~~~~~~-~~~~---~~-~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~ 84 (341)
+++||+|+|.... ...| |. ...++++.+.+.+++.+||.||++||++++......+...... ...+...++|+
T Consensus 1 l~isDlHlG~~~~~~~~g~~~p~~~~~~~~~~l~~~~~~~~~d~lii~GDl~~~~~~~~~~~~~~~~--~~~~~~~~~~v 78 (172)
T cd07391 1 LVVADLHLGKEEELRRRGILLPRGQTEDTLERLDRLIEEYGPERLIILGDLKHSFGGLSRQEFEEVA--FLRLLAKDVDV 78 (172)
T ss_pred CEeEeeccchHHHHHhcCCcCCcccHHHHHHHHHHHHHhcCCCEEEEeCcccccccccCHHHHHHHH--HHHhccCCCeE
Confidence 4799999997431 1111 22 1235677788888888999999999999865432111111111 33344568999
Q ss_pred EEEcCCCCCCC
Q 039188 85 ASVFGNHDDAA 95 (341)
Q Consensus 85 ~~i~GNHD~~~ 95 (341)
++++||||...
T Consensus 79 ~~i~GNHD~~~ 89 (172)
T cd07391 79 ILIRGNHDGGL 89 (172)
T ss_pred EEEcccCccch
Confidence 99999999974
No 49
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=98.95 E-value=2.5e-09 Score=97.56 Aligned_cols=79 Identities=19% Similarity=0.240 Sum_probs=52.5
Q ss_pred eEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHh--hhCCCEEEEeCcccCCCccc--hhhHHHHHHHHHHHHHhCCC
Q 039188 7 FKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLD--DEAPGLVIYLGDVITANNIA--IANASLYWDQAISPTRARGI 82 (341)
Q Consensus 7 ~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~pD~vv~tGDl~~~~~~~--~~~~~~~~~~~~~~l~~~~i 82 (341)
+||+++||+|++... + ...+.+.+.++ +.+||+|+++||+++..... .......+.++++.+.+.++
T Consensus 1 M~i~~iSDlHl~~~~-----~----~~~~~~~~~l~~~~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~g~ 71 (241)
T PRK05340 1 MPTLFISDLHLSPER-----P----AITAAFLRFLRGEARQADALYILGDLFEAWIGDDDPSPFAREIAAALKALSDSGV 71 (241)
T ss_pred CcEEEEeecCCCCCC-----h----hHHHHHHHHHHhhhccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHHHcCC
Confidence 589999999998532 1 12233444443 35899999999999842110 00112233466677777789
Q ss_pred CEEEEcCCCCCC
Q 039188 83 PWASVFGNHDDA 94 (341)
Q Consensus 83 P~~~i~GNHD~~ 94 (341)
|+++++||||..
T Consensus 72 ~v~~v~GNHD~~ 83 (241)
T PRK05340 72 PCYFMHGNRDFL 83 (241)
T ss_pred eEEEEeCCCchh
Confidence 999999999986
No 50
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=98.95 E-value=3e-09 Score=99.06 Aligned_cols=76 Identities=21% Similarity=0.288 Sum_probs=51.2
Q ss_pred CCeEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCcccCC-CccchhhHHHHHHHHHHHHHhCCCC
Q 039188 5 APFKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVITA-NNIAIANASLYWDQAISPTRARGIP 83 (341)
Q Consensus 5 ~~~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~-~~~~~~~~~~~~~~~~~~l~~~~iP 83 (341)
..++|+|+||+|+.... ....+.+.+ +..+.||+||+|||+++. ... ....+..+++.|. ...+
T Consensus 43 ~~~~iv~lSDlH~~~~~---------~~~~~~~~~-i~~~~~DlivltGD~~~~~~~~----~~~~~~~~L~~L~-~~~g 107 (284)
T COG1408 43 QGLKIVQLSDLHSLPFR---------EEKLALLIA-IANELPDLIVLTGDYVDGDRPP----GVAALALFLAKLK-APLG 107 (284)
T ss_pred CCeEEEEeehhhhchhh---------HHHHHHHHH-HHhcCCCEEEEEeeeecCCCCC----CHHHHHHHHHhhh-ccCC
Confidence 46899999999997531 222333433 344567999999999996 221 1222345555544 3678
Q ss_pred EEEEcCCCCCCC
Q 039188 84 WASVFGNHDDAA 95 (341)
Q Consensus 84 ~~~i~GNHD~~~ 95 (341)
++++.||||...
T Consensus 108 v~av~GNHd~~~ 119 (284)
T COG1408 108 VFAVLGNHDYGV 119 (284)
T ss_pred EEEEeccccccc
Confidence 999999999986
No 51
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=98.91 E-value=2.1e-07 Score=86.55 Aligned_cols=87 Identities=20% Similarity=0.206 Sum_probs=49.1
Q ss_pred eEEEEEecCCCCcCCCCCCCC----CCChhHHHHHHHHHhhhCCCEEEE-eCcccCCCccchhh---HHHHHHHHHHHHH
Q 039188 7 FKIVLFADLHFGESAWTDWGP----LQDVNSSRVMSTVLDDEAPGLVIY-LGDVITANNIAIAN---ASLYWDQAISPTR 78 (341)
Q Consensus 7 ~~i~~isDlH~~~~~~~~~~~----~~~~~~~~~l~~~l~~~~pD~vv~-tGDl~~~~~~~~~~---~~~~~~~~~~~l~ 78 (341)
++|++++|+|-.-.++..... ......+..+.+.+.+..||.+++ +||++++....... .......+++.|.
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~gg~~~l~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~~~~~~~~~~~~~~~~~ln 80 (277)
T cd07410 1 LRILATSDLHGNLLPYDYYTDKPDASGGLARVATLIKKARAENPNTLLIDNGDTIQGSPLADYYAKIEDGDPHPMIAAMN 80 (277)
T ss_pred CeEEEEeccccceeCccccCCCcCCccCHHHHHHHHHHHHhcCCCeEEEeCCccCCccHHHHHhhhcccCCCChHHHHHH
Confidence 589999999954322110000 112223333333344457898887 99999976421100 0001134667777
Q ss_pred hCCCCEEEEcCCCCCC
Q 039188 79 ARGIPWASVFGNHDDA 94 (341)
Q Consensus 79 ~~~iP~~~i~GNHD~~ 94 (341)
..+.. ++++||||+.
T Consensus 81 ~~g~d-~~~lGNHe~d 95 (277)
T cd07410 81 ALGYD-AGTLGNHEFN 95 (277)
T ss_pred hcCCC-EEeecccCcc
Confidence 77876 5567999986
No 52
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.91 E-value=1.3e-08 Score=83.95 Aligned_cols=38 Identities=26% Similarity=0.330 Sum_probs=25.4
Q ss_pred hhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 039188 43 DEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVFGNHDD 93 (341)
Q Consensus 43 ~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~GNHD~ 93 (341)
..++|+|+++||+... . + ..+..+ .+.|++++.||||.
T Consensus 20 ~~~~d~ii~~GD~~~~-------~---~-~~~~~~--~~~~~~~V~GN~D~ 57 (129)
T cd07403 20 LEGVDLILSAGDLPKE-------Y---L-EYLVTM--LNVPVYYVHGNHDV 57 (129)
T ss_pred CCCCCEEEECCCCChH-------H---H-HHHHHH--cCCCEEEEeCCCcc
Confidence 4689999999997321 1 1 112122 36789999999984
No 53
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=98.89 E-value=4.3e-09 Score=91.08 Aligned_cols=86 Identities=26% Similarity=0.249 Sum_probs=55.3
Q ss_pred EEEecCCCCcCCCCCC-C-------C-CCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchh-hHHHHHHHHHHHHHh
Q 039188 10 VLFADLHFGESAWTDW-G-------P-LQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIA-NASLYWDQAISPTRA 79 (341)
Q Consensus 10 ~~isDlH~~~~~~~~~-~-------~-~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~-~~~~~~~~~~~~l~~ 79 (341)
+.+||+|++....... + + ..+....+.+.+++++.+||+||++||++++...... +..+++.++.+.+..
T Consensus 1 llvaDpql~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~i~~~~pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~ 80 (171)
T cd07384 1 LLVADPQILDETSYPPRPKIALRLTRFYTDAYMRRAFKTALQRLKPDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFL 80 (171)
T ss_pred CcccCccccCCCCCCCCchhhhHHHHHhHHHHHHHHHHHHHHhcCCCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhcc
Confidence 4689999987542111 1 0 1233456677777888899999999999997653221 122233333333322
Q ss_pred -----CCCCEEEEcCCCCCCC
Q 039188 80 -----RGIPWASVFGNHDDAA 95 (341)
Q Consensus 80 -----~~iP~~~i~GNHD~~~ 95 (341)
.++|+++|+||||...
T Consensus 81 ~~~~~~~~~~~~v~GNHD~g~ 101 (171)
T cd07384 81 PSNGLEDIPVYYVPGNHDIGY 101 (171)
T ss_pred cccccCCceEEEECCccccCC
Confidence 2689999999999974
No 54
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=98.86 E-value=1.7e-07 Score=86.45 Aligned_cols=82 Identities=27% Similarity=0.441 Sum_probs=48.3
Q ss_pred eEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCC-EEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEE
Q 039188 7 FKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPG-LVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWA 85 (341)
Q Consensus 7 ~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD-~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~ 85 (341)
++|+|++|+| ...... .+.......+..+.+.+.++.|| ++|.+||++++..... .. .-+.+++.|+..+.. +
T Consensus 1 ~~il~~nd~~-~~~~~~-~~~~gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~--~~-~g~~~~~~l~~l~~d-~ 74 (257)
T cd07406 1 FTILHFNDVY-EIAPLD-GGPVGGAARFATLRKQLRKENPNTLVLFSGDVLSPSLLST--AT-KGKQMVPVLNALGVD-L 74 (257)
T ss_pred CeEEEEccce-eecccC-CCCcCCHHHHHHHHHHHHhcCCCEEEEECCCccCCccchh--hc-CCccHHHHHHhcCCc-E
Confidence 5899999999 322110 01112233334343344445788 9999999998764211 00 113455666666665 5
Q ss_pred EEcCCCCCC
Q 039188 86 SVFGNHDDA 94 (341)
Q Consensus 86 ~i~GNHD~~ 94 (341)
+++||||+.
T Consensus 75 ~~~GNHefd 83 (257)
T cd07406 75 ACFGNHEFD 83 (257)
T ss_pred Eeecccccc
Confidence 589999986
No 55
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=98.86 E-value=5.4e-09 Score=94.77 Aligned_cols=77 Identities=22% Similarity=0.311 Sum_probs=49.0
Q ss_pred EEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhh--hCCCEEEEeCcccCCCcc--chhhHHHHHHHHHHHHHhCCCCE
Q 039188 9 IVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDD--EAPGLVIYLGDVITANNI--AIANASLYWDQAISPTRARGIPW 84 (341)
Q Consensus 9 i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~pD~vv~tGDl~~~~~~--~~~~~~~~~~~~~~~l~~~~iP~ 84 (341)
.+++||+|++... + ...+.+.+.+.+ .+||+||++||+++.... ........+.++++.|.+.++|+
T Consensus 1 ~~~iSDlHl~~~~-----~----~~~~~~l~~l~~~~~~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~~~~v 71 (231)
T TIGR01854 1 TLFISDLHLSPER-----P----DITALFLDFLREEARKADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQGVPC 71 (231)
T ss_pred CeEEEecCCCCCC-----h----hHHHHHHHHHHhhhccCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHCCCeE
Confidence 3799999998532 1 112222233332 279999999999984211 01111223455667777778999
Q ss_pred EEEcCCCCCC
Q 039188 85 ASVFGNHDDA 94 (341)
Q Consensus 85 ~~i~GNHD~~ 94 (341)
++++||||..
T Consensus 72 ~~v~GNHD~~ 81 (231)
T TIGR01854 72 YFMHGNRDFL 81 (231)
T ss_pred EEEcCCCchh
Confidence 9999999986
No 56
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=98.82 E-value=2e-07 Score=79.26 Aligned_cols=80 Identities=20% Similarity=0.227 Sum_probs=45.6
Q ss_pred eEEEEEecCCCCcCC---CCCCCCC---CChhHHHHHHHHHhhhCC-CEEEEeCcccCCCccchhhHHHHHHHHHHHHHh
Q 039188 7 FKIVLFADLHFGESA---WTDWGPL---QDVNSSRVMSTVLDDEAP-GLVIYLGDVITANNIAIANASLYWDQAISPTRA 79 (341)
Q Consensus 7 ~~i~~isDlH~~~~~---~~~~~~~---~~~~~~~~l~~~l~~~~p-D~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~ 79 (341)
++|.-|+|+|+.... ++-+|+. ...+..+.-+. .-.| |.|++.||+.-.-.. +++ ..-+..+..
T Consensus 1 M~iyaiaDLHLa~~~pKpM~vFGe~W~gh~ekI~k~W~~---~v~~eDiVllpGDiSWaM~l--~ea----~~Dl~~i~~ 71 (230)
T COG1768 1 MRIYAIADLHLALGVPKPMEVFGEPWSGHHEKIKKHWRS---KVSPEDIVLLPGDISWAMRL--EEA----EEDLRFIGD 71 (230)
T ss_pred CceeeeehhhHhhCCCCceeecCCcccCchHHHHHHHHh---cCChhhEEEecccchhheec--hhh----hhhhhhhhc
Confidence 478899999997642 2222221 11111111111 1234 899999999654432 111 233445566
Q ss_pred CCCCEEEEcCCCCCCC
Q 039188 80 RGIPWASVFGNHDDAA 95 (341)
Q Consensus 80 ~~iP~~~i~GNHD~~~ 95 (341)
+.-.-+++.||||...
T Consensus 72 LPG~K~m~rGNHDYWw 87 (230)
T COG1768 72 LPGTKYMIRGNHDYWW 87 (230)
T ss_pred CCCcEEEEecCCcccc
Confidence 6666788999999973
No 57
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=98.79 E-value=2.1e-06 Score=78.59 Aligned_cols=81 Identities=20% Similarity=0.163 Sum_probs=48.6
Q ss_pred eEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCC-EEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEE
Q 039188 7 FKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPG-LVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWA 85 (341)
Q Consensus 7 ~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD-~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~ 85 (341)
++|+++||+|-....+ ........+..+.+.+++..|| ++|.+||++++..... ......+++.|...++- +
T Consensus 1 l~i~~~sD~hg~~~~~---~~~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~---~~~~~~~~~~l~~~g~d-~ 73 (252)
T cd00845 1 LTILHTNDLHGHFEPA---GGVGGAARLATLIKEERAENENTLLLDAGDNFDGSPPST---ATKGEANIELMNALGYD-A 73 (252)
T ss_pred CEEEEecccccCcccc---CCcCCHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchh---ccCCcHHHHHHHhcCCC-E
Confidence 5899999999432211 1112223334444444556787 8899999999776321 11123455666666654 4
Q ss_pred EEcCCCCCC
Q 039188 86 SVFGNHDDA 94 (341)
Q Consensus 86 ~i~GNHD~~ 94 (341)
+++||||+.
T Consensus 74 ~~~GNHe~d 82 (252)
T cd00845 74 VTIGNHEFD 82 (252)
T ss_pred Eeecccccc
Confidence 678999986
No 58
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=98.77 E-value=1.5e-08 Score=91.35 Aligned_cols=82 Identities=22% Similarity=0.183 Sum_probs=56.5
Q ss_pred EEEEEecCCCCcCCC-CCCC---CC-CChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCC
Q 039188 8 KIVLFADLHFGESAW-TDWG---PL-QDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGI 82 (341)
Q Consensus 8 ~i~~isDlH~~~~~~-~~~~---~~-~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~i 82 (341)
+.+++||+|+|.... ...| |. +..++++.+.+++++.+||.||++||+++..... ..++.+.+.+.+...
T Consensus 16 ~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~~~-----~~~~~~~~~l~~~~~ 90 (225)
T TIGR00024 16 DKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKHEFKKG-----LEWRFIREFIEVTFR 90 (225)
T ss_pred CeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCccccccCCh-----HHHHHHHHHHHhcCC
Confidence 578999999997431 1112 11 2234566677777778999999999999866531 223444555555667
Q ss_pred CEEEEcCCCCCC
Q 039188 83 PWASVFGNHDDA 94 (341)
Q Consensus 83 P~~~i~GNHD~~ 94 (341)
++++|+||||..
T Consensus 91 ~v~~V~GNHD~~ 102 (225)
T TIGR00024 91 DLILIRGNHDAL 102 (225)
T ss_pred cEEEECCCCCCc
Confidence 999999999986
No 59
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=98.68 E-value=4.1e-08 Score=87.93 Aligned_cols=87 Identities=21% Similarity=0.280 Sum_probs=63.9
Q ss_pred eEEEEEecCCCCcCCC-CCCC---CC-CChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCC
Q 039188 7 FKIVLFADLHFGESAW-TDWG---PL-QDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARG 81 (341)
Q Consensus 7 ~~i~~isDlH~~~~~~-~~~~---~~-~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (341)
-+.+++||+|+|.... ...| |. +...+.+.+.++++.++|+-||+.||+.+.......++......+++.+...
T Consensus 20 ~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~~~~- 98 (235)
T COG1407 20 GRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEFGKSLRQEKEEVREFLELLDER- 98 (235)
T ss_pred CcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCccccccCccccccHHHHHHHHHHhccC-
Confidence 3689999999997531 1112 22 3345667777788899999999999999987754444555566777777665
Q ss_pred CCEEEEcCCCCCCC
Q 039188 82 IPWASVFGNHDDAA 95 (341)
Q Consensus 82 iP~~~i~GNHD~~~ 95 (341)
-|.++.||||...
T Consensus 99 -evi~i~GNHD~~i 111 (235)
T COG1407 99 -EVIIIRGNHDNGI 111 (235)
T ss_pred -cEEEEeccCCCcc
Confidence 4999999999985
No 60
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=98.61 E-value=8.3e-06 Score=75.11 Aligned_cols=82 Identities=17% Similarity=0.056 Sum_probs=49.0
Q ss_pred eEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEE
Q 039188 7 FKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWAS 86 (341)
Q Consensus 7 ~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~ 86 (341)
++|+++||+|-...... ........+..+.+.+.++++++++.+||++++..... ......+++.|...+..+.
T Consensus 1 i~il~~~D~H~~~~~~~--~~~~g~~~l~~~i~~~~~~~~~l~l~~GD~~~gs~~~~---~~~g~~~~~~ln~~g~d~~- 74 (257)
T cd07408 1 ITILHTNDIHGRIDEDD--NNGIGYAKLATYKKEMNKLDNDLLVDAGDAIQGLPISD---LDKGETIIKIMNAVGYDAV- 74 (257)
T ss_pred CEEEEeccCcccccCCC--CccccHHHHHHHHHHHHhcCCEEEEeCCCcCCCchhhh---hcCCcHHHHHHHhcCCcEE-
Confidence 58999999996543211 01112222232222233236789999999999864211 1112356677777788775
Q ss_pred EcCCCCCC
Q 039188 87 VFGNHDDA 94 (341)
Q Consensus 87 i~GNHD~~ 94 (341)
++||||+.
T Consensus 75 ~~GNHefd 82 (257)
T cd07408 75 TPGNHEFD 82 (257)
T ss_pred cccccccc
Confidence 68999986
No 61
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=98.58 E-value=1.2e-07 Score=86.59 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=49.8
Q ss_pred EEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhh-----CCCEEEEeCcccCCCcc--chh------hHHHHHHHHHHH
Q 039188 10 VLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDE-----APGLVIYLGDVITANNI--AIA------NASLYWDQAISP 76 (341)
Q Consensus 10 ~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----~pD~vv~tGDl~~~~~~--~~~------~~~~~~~~~~~~ 76 (341)
+++||+|++... .....++.+.+.++.. +||.||++||+++.... ... ...+.++.+.+.
T Consensus 2 ~~iSDlHl~~~~-------~~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (243)
T cd07386 2 VFISDVHVGSKT-------FLEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEY 74 (243)
T ss_pred EEecccCCCchh-------hhHHHHHHHHHHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHH
Confidence 789999998632 1223445566666543 56999999999986321 000 011223444455
Q ss_pred HHhC--CCCEEEEcCCCCCCC
Q 039188 77 TRAR--GIPWASVFGNHDDAA 95 (341)
Q Consensus 77 l~~~--~iP~~~i~GNHD~~~ 95 (341)
+.++ ++|+++++||||...
T Consensus 75 l~~L~~~~~v~~ipGNHD~~~ 95 (243)
T cd07386 75 LSDVPSHIKIIIIPGNHDAVR 95 (243)
T ss_pred HHhcccCCeEEEeCCCCCccc
Confidence 5544 599999999999863
No 62
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=98.57 E-value=2e-05 Score=72.80 Aligned_cols=84 Identities=14% Similarity=0.158 Sum_probs=46.7
Q ss_pred eEEEEEecCCCCcCCCC----------CCCCCCChhHHHHHHHHHhhh-CCCEE-EEeCcccCCCccchhhHHHHHHHHH
Q 039188 7 FKIVLFADLHFGESAWT----------DWGPLQDVNSSRVMSTVLDDE-APGLV-IYLGDVITANNIAIANASLYWDQAI 74 (341)
Q Consensus 7 ~~i~~isDlH~~~~~~~----------~~~~~~~~~~~~~l~~~l~~~-~pD~v-v~tGDl~~~~~~~~~~~~~~~~~~~ 74 (341)
++|++++|+|-.-.+.. ..+.......+..+.+.+++. .||.+ +.+||++++..... ......++
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~~~~~~~gG~~r~~~~v~~~~~~~~~~~l~l~~GD~~~gs~~~~---~~~g~~~~ 77 (264)
T cd07411 1 LTLLHINDLHGQLIPHYELEPSNLLARVFGMAGGFAHIATLIKRIRAERNPNTLLLDGGDTWQGSGEAL---YTRGQAMV 77 (264)
T ss_pred CEEEEEcccccCccccccccccccccccccccCcHHHHHHHHHHHHHhcCCCeEEEeCCCccCCChHHh---hcCChhHH
Confidence 58999999998643311 000111222333333334445 79977 56999998765311 11123556
Q ss_pred HHHHhCCCCEEEEcCCCCCCC
Q 039188 75 SPTRARGIPWASVFGNHDDAA 95 (341)
Q Consensus 75 ~~l~~~~iP~~~i~GNHD~~~ 95 (341)
+.|...+. .++.||||+..
T Consensus 78 ~~l~~~g~--da~~GNHefd~ 96 (264)
T cd07411 78 DALNALGV--DAMVGHWEFTY 96 (264)
T ss_pred HHHHhhCC--eEEeccccccc
Confidence 66666444 44339999863
No 63
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=98.48 E-value=1.5e-07 Score=83.92 Aligned_cols=76 Identities=21% Similarity=0.179 Sum_probs=45.3
Q ss_pred EEEecCCCCcCCCCCCCCCCChhHHHHHHHHHh---hhCCCEEEEeCcccCCCccch----hhHHHHHHHHHHHHHhCCC
Q 039188 10 VLFADLHFGESAWTDWGPLQDVNSSRVMSTVLD---DEAPGLVIYLGDVITANNIAI----ANASLYWDQAISPTRARGI 82 (341)
Q Consensus 10 ~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~---~~~pD~vv~tGDl~~~~~~~~----~~~~~~~~~~~~~l~~~~i 82 (341)
++|||+|++.... . . ...+...+. ..+||.||++||+++...... ......+..++ .+...++
T Consensus 1 ~~iSDlHlg~~~~-----~-~---~~~~~~~~~~~~~~~~~~lvl~GDi~d~~~~~~~~~~~~~~~~~~~l~-~~~~~~~ 70 (217)
T cd07398 1 LFISDLHLGDGGP-----A-A---DFLLLFLLAALALGEADALYLLGDIFDLWFGDDEVVPPAAHEVLAALL-RLADRGT 70 (217)
T ss_pred CEeeeecCCCCCC-----C-H---HHHHHHHHhhhccCCCCEEEEeccEEEEEecCCCCCChHHHHHHHHHH-HHHHCCC
Confidence 4799999997431 1 1 112222222 358999999999998432111 11111112333 3335689
Q ss_pred CEEEEcCCCCCCC
Q 039188 83 PWASVFGNHDDAA 95 (341)
Q Consensus 83 P~~~i~GNHD~~~ 95 (341)
++++++||||...
T Consensus 71 ~v~~v~GNHD~~~ 83 (217)
T cd07398 71 RVYYVPGNHDFLL 83 (217)
T ss_pred eEEEECCCchHHH
Confidence 9999999999974
No 64
>PRK04036 DNA polymerase II small subunit; Validated
Probab=98.47 E-value=4.7e-07 Score=91.07 Aligned_cols=85 Identities=18% Similarity=0.217 Sum_probs=53.6
Q ss_pred CCCeEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHh---------hhCCCEEEEeCcccCCCccchh--------hH
Q 039188 4 GAPFKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLD---------DEAPGLVIYLGDVITANNIAIA--------NA 66 (341)
Q Consensus 4 ~~~~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~---------~~~pD~vv~tGDl~~~~~~~~~--------~~ 66 (341)
+..++|+++||+|++.... ....+..+.+.++ ..+||.||++||+++....... ..
T Consensus 241 ~~~~~i~~ISDlHlgs~~~-------~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~ 313 (504)
T PRK04036 241 DEKVYAVFISDVHVGSKEF-------LEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDI 313 (504)
T ss_pred CCccEEEEEcccCCCCcch-------hHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhh
Confidence 4568999999999986421 1233444555555 5689999999999985321000 00
Q ss_pred HHHHHHHHHHHHh--CCCCEEEEcCCCCCCC
Q 039188 67 SLYWDQAISPTRA--RGIPWASVFGNHDDAA 95 (341)
Q Consensus 67 ~~~~~~~~~~l~~--~~iP~~~i~GNHD~~~ 95 (341)
...++.+.+.|.+ ..+|++++|||||...
T Consensus 314 ~~~~~~l~~~L~~L~~~i~V~~ipGNHD~~~ 344 (504)
T PRK04036 314 YEQYEAAAEYLKQIPEDIKIIISPGNHDAVR 344 (504)
T ss_pred HHHHHHHHHHHHhhhcCCeEEEecCCCcchh
Confidence 1112333344443 3689999999999864
No 65
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=98.46 E-value=5.4e-07 Score=77.63 Aligned_cols=77 Identities=18% Similarity=0.205 Sum_probs=46.8
Q ss_pred EEEecCCCCcCCCCCC-CCC-CChh-HHHHHHHHHhh--hCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCE
Q 039188 10 VLFADLHFGESAWTDW-GPL-QDVN-SSRVMSTVLDD--EAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPW 84 (341)
Q Consensus 10 ~~isDlH~~~~~~~~~-~~~-~~~~-~~~~l~~~l~~--~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~ 84 (341)
..+||+|+|....... .+. ...+ ..+.+.+.+.+ .++|.||++||+++.... ... .+.+.+.+.|+
T Consensus 2 ~~isD~Hlg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~vi~~GDl~~~~~~-----~~~----~~~l~~~~~~~ 72 (168)
T cd07390 2 YFTSDTHFGHANILRFCNRPFDDVEEMDEALIRNWNETVGPDDTVYHLGDFSFGGKA-----GTE----LELLSRLNGRK 72 (168)
T ss_pred eEecccccCCHHHHccCCCCCCCHHHHHHHHHHHHhhhcCCCCEEEEeCCCCCCCCh-----HHH----HHHHHhCCCCe
Confidence 4799999998531100 000 0111 12222222333 268999999999997652 111 44455667899
Q ss_pred EEEcCCCCCCC
Q 039188 85 ASVFGNHDDAA 95 (341)
Q Consensus 85 ~~i~GNHD~~~ 95 (341)
++|+||||...
T Consensus 73 ~~v~GNHD~~~ 83 (168)
T cd07390 73 HLIKGNHDSSL 83 (168)
T ss_pred EEEeCCCCchh
Confidence 99999999874
No 66
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=98.46 E-value=5.4e-05 Score=70.67 Aligned_cols=85 Identities=16% Similarity=0.115 Sum_probs=47.6
Q ss_pred eEEEEEecCCCCcCCCCCCC-----CC-CChhHHHHHHHHHh---hhCCC-EEEEeCcccCCCccchhhHHHHHHHHHHH
Q 039188 7 FKIVLFADLHFGESAWTDWG-----PL-QDVNSSRVMSTVLD---DEAPG-LVIYLGDVITANNIAIANASLYWDQAISP 76 (341)
Q Consensus 7 ~~i~~isDlH~~~~~~~~~~-----~~-~~~~~~~~l~~~l~---~~~pD-~vv~tGDl~~~~~~~~~~~~~~~~~~~~~ 76 (341)
++|++++|+|-.-....... .. ...--+..+..+++ +..|+ +++.+||++++..... ...-+..++.
T Consensus 1 l~il~tnD~Hg~l~~~~~~~~~~~~~~~~~~gG~ar~~~~v~~~r~~~~~~l~ld~GD~~~gs~~~~---~~~g~~~~~~ 77 (281)
T cd07409 1 LTILHTNDHHSRFEETNPSGGVKDAATEKCYGGFARVATLVKELRAENPNVLFLNAGDAFQGTLWYT---LYKGNADAEF 77 (281)
T ss_pred CEEEEeccccccccccCccccccccccccccCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCcchhh---hcCChHHHHH
Confidence 58999999996532211000 00 00001233344443 34677 5555999998765311 0012355667
Q ss_pred HHhCCCCEEEEcCCCCCCC
Q 039188 77 TRARGIPWASVFGNHDDAA 95 (341)
Q Consensus 77 l~~~~iP~~~i~GNHD~~~ 95 (341)
|+..++.+. ++||||+..
T Consensus 78 ln~~g~D~~-~lGNHefd~ 95 (281)
T cd07409 78 MNLLGYDAM-TLGNHEFDD 95 (281)
T ss_pred HHhcCCCEE-EeccccccC
Confidence 777888865 679999974
No 67
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=98.45 E-value=5.1e-07 Score=72.53 Aligned_cols=71 Identities=27% Similarity=0.323 Sum_probs=46.8
Q ss_pred EEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEcC
Q 039188 10 VLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVFG 89 (341)
Q Consensus 10 ~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~G 89 (341)
++++|+|++.... ..........+.+||+||++||+++....... ... .....+....+|+++++|
T Consensus 1 ~~~gD~h~~~~~~----------~~~~~~~~~~~~~~~~vi~~GD~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~G 66 (131)
T cd00838 1 AVISDIHGNLEAL----------EAVLEAALAAAEKPDFVLVLGDLVGDGPDPEE--VLA--AALALLLLLGIPVYVVPG 66 (131)
T ss_pred CeeecccCCccch----------HHHHHHHHhcccCCCEEEECCcccCCCCCchH--HHH--HHHHHhhcCCCCEEEeCC
Confidence 4789999986421 00011234456799999999999997764211 111 114555678999999999
Q ss_pred CCCCC
Q 039188 90 NHDDA 94 (341)
Q Consensus 90 NHD~~ 94 (341)
|||..
T Consensus 67 NHDi~ 71 (131)
T cd00838 67 NHDIL 71 (131)
T ss_pred CceEE
Confidence 99943
No 68
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=98.45 E-value=5.4e-05 Score=70.92 Aligned_cols=85 Identities=22% Similarity=0.203 Sum_probs=46.5
Q ss_pred eEEEEEecCCCCcCCCCC--CCCCCChhHHHHHHHHHhhhCCC-EEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCC
Q 039188 7 FKIVLFADLHFGESAWTD--WGPLQDVNSSRVMSTVLDDEAPG-LVIYLGDVITANNIAIANASLYWDQAISPTRARGIP 83 (341)
Q Consensus 7 ~~i~~isDlH~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~pD-~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP 83 (341)
++|++++|+|-.-..... .........+..+.+.+.+..|+ ++|.+||++++..... ....-...++.|+..++-
T Consensus 1 i~il~tnD~Hg~~~~~~~~~~~~~gG~arl~~~i~~~r~~~~~~l~ld~GD~~~gs~~~s--~~~~g~~~~~~~n~~g~D 78 (288)
T cd07412 1 VQILAINDFHGRLEPPGKVVTVPAGGAAYLAAYLDEARAQNPNSLFVSAGDLIGASPFES--ALLQDEPTIEALNAMGVD 78 (288)
T ss_pred CeEEEEeccccCccCCCCccccccccHHHHHHHHHHHHhcCCCeEEEeCCcccccccchh--hcccCCcHHHHHHhhCCe
Confidence 589999999943222110 00001122233322223334564 8999999998654210 000012456677777776
Q ss_pred EEEEcCCCCCC
Q 039188 84 WASVFGNHDDA 94 (341)
Q Consensus 84 ~~~i~GNHD~~ 94 (341)
+ +++||||+.
T Consensus 79 a-~t~GNHefd 88 (288)
T cd07412 79 A-SAVGNHEFD 88 (288)
T ss_pred e-eeecccccc
Confidence 5 578999986
No 69
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=98.33 E-value=2.6e-05 Score=67.39 Aligned_cols=66 Identities=20% Similarity=0.158 Sum_probs=46.5
Q ss_pred CeEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEE
Q 039188 6 PFKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWA 85 (341)
Q Consensus 6 ~~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~ 85 (341)
.++|+++||+|.... . .....+.....++|+||..||.+..... ..+... ...+++
T Consensus 1 ~m~ilviSDtH~~~~-----------~-~~~~~~~~~~~~~d~vih~GD~~~~~~~------~~l~~~------~~~~i~ 56 (172)
T COG0622 1 MMKILVISDTHGPLR-----------A-IEKALKIFNLEKVDAVIHAGDSTSPFTL------DALEGG------LAAKLI 56 (172)
T ss_pred CcEEEEEeccCCChh-----------h-hhHHHHHhhhcCCCEEEECCCcCCccch------HHhhcc------cccceE
Confidence 479999999998531 1 2233444556799999999999887652 111110 368899
Q ss_pred EEcCCCCCCC
Q 039188 86 SVFGNHDDAA 95 (341)
Q Consensus 86 ~i~GNHD~~~ 95 (341)
+|.||.|...
T Consensus 57 ~V~GN~D~~~ 66 (172)
T COG0622 57 AVRGNCDGEV 66 (172)
T ss_pred EEEccCCCcc
Confidence 9999999974
No 70
>PHA02239 putative protein phosphatase
Probab=98.31 E-value=2.2e-06 Score=77.82 Aligned_cols=71 Identities=15% Similarity=0.266 Sum_probs=45.9
Q ss_pred eEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhh-h-CCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCE
Q 039188 7 FKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDD-E-APGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPW 84 (341)
Q Consensus 7 ~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~-~-~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~ 84 (341)
+|+++|||+|... ..+..+.+.++. . ..|.||++||+++.+.. +.+.+..+++.+ ....++
T Consensus 1 m~~~~IsDIHG~~------------~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~----s~~v~~~l~~~~-~~~~~~ 63 (235)
T PHA02239 1 MAIYVVPDIHGEY------------QKLLTIMDKINNERKPEETIVFLGDYVDRGKR----SKDVVNYIFDLM-SNDDNV 63 (235)
T ss_pred CeEEEEECCCCCH------------HHHHHHHHHHhhcCCCCCEEEEecCcCCCCCC----hHHHHHHHHHHh-hcCCCe
Confidence 4799999999421 122333333332 2 35999999999997753 233344444432 335689
Q ss_pred EEEcCCCCCC
Q 039188 85 ASVFGNHDDA 94 (341)
Q Consensus 85 ~~i~GNHD~~ 94 (341)
++++||||..
T Consensus 64 ~~l~GNHE~~ 73 (235)
T PHA02239 64 VTLLGNHDDE 73 (235)
T ss_pred EEEECCcHHH
Confidence 9999999986
No 71
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=98.28 E-value=3.4e-06 Score=82.67 Aligned_cols=85 Identities=21% Similarity=0.356 Sum_probs=56.3
Q ss_pred CCCeEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHH---hhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHH--
Q 039188 4 GAPFKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVL---DDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTR-- 78 (341)
Q Consensus 4 ~~~~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l---~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~-- 78 (341)
++.+||++.||.|+|..... +-...++...++.++ .+++.|+|++.|||++..... ...+.++++.|.
T Consensus 11 entirILVaTD~HlGY~EkD---~vrg~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeNkPS----r~~L~~~i~lLRry 83 (646)
T KOG2310|consen 11 ENTIRILVATDNHLGYGEKD---AVRGDDSFVTFEEILEIAQENDVDMILLGGDLFHENKPS----RKTLHRCLELLRRY 83 (646)
T ss_pred ccceEEEEeecCccccccCC---cccccchHHHHHHHHHHHHhcCCcEEEecCcccccCCcc----HHHHHHHHHHHHHH
Confidence 35799999999999985321 111223444555554 467999999999999977542 222223332221
Q ss_pred ----------------------------------hCCCCEEEEcCCCCCCC
Q 039188 79 ----------------------------------ARGIPWASVFGNHDDAA 95 (341)
Q Consensus 79 ----------------------------------~~~iP~~~i~GNHD~~~ 95 (341)
...|||+.|-||||...
T Consensus 84 ClgdkP~~le~lSD~s~~f~~~~f~~VNY~DpNlNIsIPVFsIHGNHDDpS 134 (646)
T KOG2310|consen 84 CLGDKPVQLEILSDQSVNFGNSVFGNVNYEDPNLNISIPVFSIHGNHDDPS 134 (646)
T ss_pred ccCCCceeeEEecccceeccccccceecccCCCcceeeeeEEeecCCCCCc
Confidence 12689999999999985
No 72
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.24 E-value=7.1e-05 Score=82.75 Aligned_cols=77 Identities=21% Similarity=0.222 Sum_probs=47.7
Q ss_pred CeEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEE-eCcccCCCccchhhHHHHHHHHHHHHHhCCCCE
Q 039188 6 PFKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIY-LGDVITANNIAIANASLYWDQAISPTRARGIPW 84 (341)
Q Consensus 6 ~~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~-tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~ 84 (341)
+++|++++|+|-... ....+..+.+.+.+.+||.+++ +||++++.... ........++.|...++-
T Consensus 660 ~l~Il~~nD~Hg~l~---------g~~r~~~~i~~~r~~~~~~l~ld~GD~~~gs~~~---~~~~g~~~~~~ln~lg~d- 726 (1163)
T PRK09419 660 ELTILHTNDFHGHLD---------GAAKRVTKIKEVKEENPNTILVDAGDVYQGSLYS---NLLKGLPVLKMMKEMGYD- 726 (1163)
T ss_pred EEEEEEEeecccCCC---------CHHHHHHHHHHHHhhCCCeEEEecCCCCCCcchh---hhcCChHHHHHHhCcCCC-
Confidence 499999999993221 1122333333334568998877 99999876421 111123556667666554
Q ss_pred EEEcCCCCCCC
Q 039188 85 ASVFGNHDDAA 95 (341)
Q Consensus 85 ~~i~GNHD~~~ 95 (341)
++++||||+..
T Consensus 727 ~~~~GNHEfd~ 737 (1163)
T PRK09419 727 ASTFGNHEFDW 737 (1163)
T ss_pred EEEeccccccc
Confidence 45999999863
No 73
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=98.13 E-value=6e-06 Score=76.72 Aligned_cols=66 Identities=17% Similarity=0.228 Sum_probs=46.8
Q ss_pred eEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhh----hCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCC
Q 039188 7 FKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDD----EAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGI 82 (341)
Q Consensus 7 ~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~i 82 (341)
+++++|+|+|-.. ..++++++. .++|.++++||+++.+.. +. ++++.+.+++.
T Consensus 1 M~~~vIGDIHG~~---------------~~l~~ll~~~~~~~~~D~li~lGDlVdrGp~----s~----~vl~~l~~l~~ 57 (275)
T PRK00166 1 MATYAIGDIQGCY---------------DELQRLLEKIDFDPAKDTLWLVGDLVNRGPD----SL----EVLRFVKSLGD 57 (275)
T ss_pred CcEEEEEccCCCH---------------HHHHHHHHhcCCCCCCCEEEEeCCccCCCcC----HH----HHHHHHHhcCC
Confidence 4789999999642 223333332 368999999999997763 22 45555555667
Q ss_pred CEEEEcCCCCCCC
Q 039188 83 PWASVFGNHDDAA 95 (341)
Q Consensus 83 P~~~i~GNHD~~~ 95 (341)
++.+|.||||...
T Consensus 58 ~~~~VlGNHD~~l 70 (275)
T PRK00166 58 SAVTVLGNHDLHL 70 (275)
T ss_pred CeEEEecChhHHH
Confidence 8999999999963
No 74
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=98.12 E-value=9.6e-06 Score=78.18 Aligned_cols=92 Identities=20% Similarity=0.097 Sum_probs=57.7
Q ss_pred CCCeEEEEEecCCCCcCCCC-CCCC-----CCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccc-hhhHHHHHHHHHHH
Q 039188 4 GAPFKIVLFADLHFGESAWT-DWGP-----LQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIA-IANASLYWDQAISP 76 (341)
Q Consensus 4 ~~~~~i~~isDlH~~~~~~~-~~~~-----~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~-~~~~~~~~~~~~~~ 76 (341)
+..+||+.+||+|+-..-.. ..+. ..|....+.+..+....+||.|++.|||++++... +++..+++.++.+.
T Consensus 46 ~n~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~~eEf~~~~~RfkkI 125 (410)
T KOG3662|consen 46 ENSTKILLVADPQILGNWPKKFLVSWLDKYGNDWYLRRSFDMSQWRLKPDVVFFLGDLFDEGQWAGDEEFKKRYERFKKI 125 (410)
T ss_pred CCceEEEEecCchhcCCCCCccccchHHhhhhHHHHHHHHHHHHhccCCCEEEEeccccccCccCChHHHHHHHHHHHHh
Confidence 35699999999999652110 0000 01222223333333346999999999999966543 33444455555444
Q ss_pred HHh-CCCCEEEEcCCCCCCC
Q 039188 77 TRA-RGIPWASVFGNHDDAA 95 (341)
Q Consensus 77 l~~-~~iP~~~i~GNHD~~~ 95 (341)
+.. ..+|+..+|||||...
T Consensus 126 f~~k~~~~~~~i~GNhDIGf 145 (410)
T KOG3662|consen 126 FGRKGNIKVIYIAGNHDIGF 145 (410)
T ss_pred hCCCCCCeeEEeCCcccccc
Confidence 432 4799999999999984
No 75
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=98.11 E-value=8.4e-06 Score=71.51 Aligned_cols=61 Identities=23% Similarity=0.213 Sum_probs=42.4
Q ss_pred HHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhC------------------CCCEEEEcCCCCCCC
Q 039188 35 RVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRAR------------------GIPWASVFGNHDDAA 95 (341)
Q Consensus 35 ~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~------------------~iP~~~i~GNHD~~~ 95 (341)
...+.+....+||.|++.|||+++....+++..+++.++.+.+-.. ++|++.|+||||...
T Consensus 34 ~~~~~~~~~l~Pd~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~V~GNHDIG~ 112 (193)
T cd08164 34 HIVSMMQFWLKPDAVVVLGDLFSSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLINIAGNHDVGY 112 (193)
T ss_pred HHHHHHHHhcCCCEEEEeccccCCCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCCceEEEECCcccCCC
Confidence 3444455567999999999999876444444444555555544211 489999999999974
No 76
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=97.91 E-value=4.1e-05 Score=68.33 Aligned_cols=50 Identities=14% Similarity=0.123 Sum_probs=32.7
Q ss_pred CCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 039188 45 APGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVFGNHDDAA 95 (341)
Q Consensus 45 ~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~GNHD~~~ 95 (341)
+.|.+|++||+++.+... .+..+.+.++.....+.+.++++++||||...
T Consensus 32 ~~d~lv~lGD~vdrG~~~-~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~~ 81 (208)
T cd07425 32 GSTHLVQLGDIFDRGPDV-IEILWLLYKLEQEAAKAGGKVHFLLGNHELMN 81 (208)
T ss_pred CCcEEEEECCCcCCCcCH-HHHHHHHHHHHHHHHhcCCeEEEeeCCCcHHH
Confidence 679999999999977532 11112222222222335678999999999874
No 77
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=97.87 E-value=0.00054 Score=69.46 Aligned_cols=89 Identities=18% Similarity=0.146 Sum_probs=50.8
Q ss_pred CCCeEEEEEecCCCCcCCCCC--CCC-CCChhHHHHHHHHHhh-hCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHh
Q 039188 4 GAPFKIVLFADLHFGESAWTD--WGP-LQDVNSSRVMSTVLDD-EAPGLVIYLGDVITANNIAIANASLYWDQAISPTRA 79 (341)
Q Consensus 4 ~~~~~i~~isDlH~~~~~~~~--~~~-~~~~~~~~~l~~~l~~-~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~ 79 (341)
..+++|+|++|+|-....... .+. .........+.+.+.+ .+..++|-+||++++...... .......++.|+.
T Consensus 24 ~~~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~--~~~g~~~~~~mN~ 101 (517)
T COG0737 24 TVKLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDY--LTKGEPTVDLLNA 101 (517)
T ss_pred ceeEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcCCeEEEeCCcccCCcccccc--ccCCChHHHHHhh
Confidence 456999999999986642110 001 0111222333333333 355789999999998653221 0112345556666
Q ss_pred CCCCEEEEcCCCCCCC
Q 039188 80 RGIPWASVFGNHDDAA 95 (341)
Q Consensus 80 ~~iP~~~i~GNHD~~~ 95 (341)
.+.- +.+.|||++..
T Consensus 102 m~yD-a~tiGNHEFd~ 116 (517)
T COG0737 102 LGYD-AMTLGNHEFDY 116 (517)
T ss_pred cCCc-EEeeccccccc
Confidence 5555 44899999984
No 78
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=97.85 E-value=5.1e-05 Score=68.90 Aligned_cols=68 Identities=18% Similarity=0.175 Sum_probs=43.0
Q ss_pred eEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhh-------------CCCEEEEeCcccCCCccchhhHHHHHHHH
Q 039188 7 FKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDE-------------APGLVIYLGDVITANNIAIANASLYWDQA 73 (341)
Q Consensus 7 ~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~-------------~pD~vv~tGDl~~~~~~~~~~~~~~~~~~ 73 (341)
+||++++|+|-.. ..|+++++.. +.|.+|+.||+++.+.. +.+.++.+
T Consensus 1 ~~i~vigDIHG~~---------------~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~----s~evl~~l 61 (234)
T cd07423 1 GPFDIIGDVHGCY---------------DELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPD----SPEVLRLV 61 (234)
T ss_pred CCeEEEEECCCCH---------------HHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCC----HHHHHHHH
Confidence 3799999999642 1233333321 36899999999997753 23333333
Q ss_pred HHHHHhCCCCEEEEcCCCCCCC
Q 039188 74 ISPTRARGIPWASVFGNHDDAA 95 (341)
Q Consensus 74 ~~~l~~~~iP~~~i~GNHD~~~ 95 (341)
.+ +.. .-.++++.||||...
T Consensus 62 ~~-l~~-~~~~~~v~GNHE~~l 81 (234)
T cd07423 62 MS-MVA-AGAALCVPGNHDNKL 81 (234)
T ss_pred HH-Hhh-CCcEEEEECCcHHHH
Confidence 22 222 235789999999863
No 79
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=97.85 E-value=0.0012 Score=61.73 Aligned_cols=88 Identities=16% Similarity=0.040 Sum_probs=48.0
Q ss_pred CCeEEEEEecCCCCcCCCCCCC-CCCChhHH----HHHHHHHhhhCCC-EEEEeCcccCCCccchhhHHHHHHHHHHHHH
Q 039188 5 APFKIVLFADLHFGESAWTDWG-PLQDVNSS----RVMSTVLDDEAPG-LVIYLGDVITANNIAIANASLYWDQAISPTR 78 (341)
Q Consensus 5 ~~~~i~~isDlH~~~~~~~~~~-~~~~~~~~----~~l~~~l~~~~pD-~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~ 78 (341)
.+++|+|.+|+|-......... .......+ +.+++...+..|+ +++-+||.+++...... .....+.+.+.|+
T Consensus 4 ~~ltILhtnD~Hg~l~~~~~~~~~~~~~gg~a~~i~~~~~~~~~~~~~~Llld~GD~~qGs~~~~~-~~~~g~~~~~~mN 82 (282)
T cd07407 4 GDINFLHTTDTHGWLGGHLNDPNYSADWGDFASFVEHMREKADQKGVDLLLVDTGDLHDGNGLSDA-SPPPGSYSNPIFR 82 (282)
T ss_pred ceEEEEEEcccccCCcCcCCcccccCCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCccCCeeceee-ecCCChHHHHHHH
Confidence 4689999999995322110000 00011112 2222222334666 66779999998753211 0001245566777
Q ss_pred hCCCCEEEEcCCCCCC
Q 039188 79 ARGIPWASVFGNHDDA 94 (341)
Q Consensus 79 ~~~iP~~~i~GNHD~~ 94 (341)
..+.- ++++||||+.
T Consensus 83 ~mgyD-a~tlGNHEFd 97 (282)
T cd07407 83 MMPYD-LLTIGNHELY 97 (282)
T ss_pred hcCCc-EEeecccccC
Confidence 76665 4589999996
No 80
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.84 E-value=0.0011 Score=70.00 Aligned_cols=89 Identities=15% Similarity=0.150 Sum_probs=49.5
Q ss_pred CeEEEEEecCCCCcCCCCCCCCCC-ChhHHHHHHHHHh---hhCC-CEEEEeCcccCCCccchhhHHH-----------H
Q 039188 6 PFKIVLFADLHFGESAWTDWGPLQ-DVNSSRVMSTVLD---DEAP-GLVIYLGDVITANNIAIANASL-----------Y 69 (341)
Q Consensus 6 ~~~i~~isDlH~~~~~~~~~~~~~-~~~~~~~l~~~l~---~~~p-D~vv~tGDl~~~~~~~~~~~~~-----------~ 69 (341)
.++|++.||+|-.-.....+.... ..--+..+..+++ ++.+ -++|-.||++++.......... .
T Consensus 39 ~L~IL~TnDiHg~l~~~dy~~~~~~~~~Glar~AtlI~~~R~e~~ntlllD~GD~iqGspl~~~~~~~~~~~~~~~~~~~ 118 (780)
T PRK09418 39 NLRILETSDIHVNLMNYDYYQTKTDNKVGLVQTATLVNKAREEAKNSVLFDDGDALQGTPLGDYVANKINDPKKPVDPSY 118 (780)
T ss_pred EEEEEEEeecCCCCcCcCccccCCcCCCCHHHHHHHHHHHHHhCCCeEEEECCCCCCCchHHHHHhhccccccccccccc
Confidence 589999999998653211110000 0011233333333 3344 4889999999997632100000 0
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCCCCC
Q 039188 70 WDQAISPTRARGIPWASVFGNHDDAA 95 (341)
Q Consensus 70 ~~~~~~~l~~~~iP~~~i~GNHD~~~ 95 (341)
-.-+++.|+.++.-+ +++||||+..
T Consensus 119 ~~p~i~~mN~lgyDa-~tlGNHEFdy 143 (780)
T PRK09418 119 THPLYRLMNLMKYDV-ISLGNHEFNY 143 (780)
T ss_pred chHHHHHHhccCCCE-Eecccccccc
Confidence 013566777777764 4899999863
No 81
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.82 E-value=0.00071 Score=74.95 Aligned_cols=89 Identities=18% Similarity=0.156 Sum_probs=48.5
Q ss_pred CeEEEEEecCCCCcCCCCCCC--C--CCChhHHHHHHHHHhhhCCCEEEE-eCcccCCCccchhhHH------HHHHHHH
Q 039188 6 PFKIVLFADLHFGESAWTDWG--P--LQDVNSSRVMSTVLDDEAPGLVIY-LGDVITANNIAIANAS------LYWDQAI 74 (341)
Q Consensus 6 ~~~i~~isDlH~~~~~~~~~~--~--~~~~~~~~~l~~~l~~~~pD~vv~-tGDl~~~~~~~~~~~~------~~~~~~~ 74 (341)
.++|+++||+|-.-....... + ......+..+.+.+.++.|+.+++ +||++++....+.... ....-++
T Consensus 41 ~l~il~tnD~Hg~l~~~~y~~~~~~~~~Glar~at~i~~~r~~~~n~llld~GD~~qGs~l~~~~~~~~~~~~~~~~~~i 120 (1163)
T PRK09419 41 NIQILATTDLHGNFMDYDYASDKETTGFGLAQTATLIKKARKENPNTLLVDNGDLIQGNPLGEYAVKDNILFKNKTHPMI 120 (1163)
T ss_pred EEEEEEEecccccccccccccCCCCCCcCHHHHHHHHHHHHHhCCCeEEEeCCCccCCChhhhHHhhhccccCCCcCHHH
Confidence 599999999997643211000 0 011122233333333456775555 9999998752110000 0012455
Q ss_pred HHHHhCCCCEEEEcCCCCCCC
Q 039188 75 SPTRARGIPWASVFGNHDDAA 95 (341)
Q Consensus 75 ~~l~~~~iP~~~i~GNHD~~~ 95 (341)
+.|+..+.-+ +++||||+..
T Consensus 121 ~~mN~lgyDa-~~lGNHEFd~ 140 (1163)
T PRK09419 121 KAMNALGYDA-GTLGNHEFNY 140 (1163)
T ss_pred HHHhhcCccE-Eeeccccccc
Confidence 6677767664 4799999963
No 82
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=97.81 E-value=5.1e-05 Score=67.56 Aligned_cols=66 Identities=18% Similarity=0.151 Sum_probs=42.7
Q ss_pred EEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhh-hCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEE
Q 039188 8 KIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDD-EAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWAS 86 (341)
Q Consensus 8 ~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~ 86 (341)
||+++||+|-.. ..++.+.+.+.. .++|.|+++||+++.+.. .. ++++.+.+ .++++
T Consensus 2 ri~~isDiHg~~------------~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~----~~----~~~~~l~~--~~~~~ 59 (207)
T cd07424 2 RDFVVGDIHGHY------------SLLQKALDAVGFDPARDRLISVGDLIDRGPE----SL----ACLELLLE--PWFHA 59 (207)
T ss_pred CEEEEECCCCCH------------HHHHHHHHHcCCCCCCCEEEEeCCcccCCCC----HH----HHHHHHhc--CCEEE
Confidence 689999999421 122222222222 368999999999997653 12 34444433 46889
Q ss_pred EcCCCCCCC
Q 039188 87 VFGNHDDAA 95 (341)
Q Consensus 87 i~GNHD~~~ 95 (341)
+.||||...
T Consensus 60 v~GNhe~~~ 68 (207)
T cd07424 60 VRGNHEQMA 68 (207)
T ss_pred eECCChHHH
Confidence 999999874
No 83
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=97.79 E-value=0.0055 Score=57.35 Aligned_cols=83 Identities=14% Similarity=0.014 Sum_probs=46.8
Q ss_pred eEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhh----CC-CEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCC
Q 039188 7 FKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDE----AP-GLVIYLGDVITANNIAIANASLYWDQAISPTRARG 81 (341)
Q Consensus 7 ~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~p-D~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (341)
++|++++|+|-....... .......+..+.+.+.++ .| -+++-+||++.+..... ...-.-.++.|+..+
T Consensus 1 ltIl~tnD~Hg~l~~~~~--~~gG~ar~a~~i~~~r~~~~~~~~~~l~ld~GD~~~Gs~~~~---~~~g~~~~~~~n~~g 75 (285)
T cd07405 1 ITILHTNDHHGHFWPNGT--GEYGLAAQKTLVDGVRREVAAQGGYVLLLSGGDINTGVPESD---LQDAEPDFRGMNLVG 75 (285)
T ss_pred CEEEEEcccccccccCCC--CCccHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCchhHH---hcCcchHHHHHHhhC
Confidence 589999999976533210 011112222222222222 34 48999999998765311 001124456677777
Q ss_pred CCEEEEcCCCCCCC
Q 039188 82 IPWASVFGNHDDAA 95 (341)
Q Consensus 82 iP~~~i~GNHD~~~ 95 (341)
+-+. ++||||+..
T Consensus 76 ~Da~-~~GNHEfD~ 88 (285)
T cd07405 76 YDAM-AVGNHEFDN 88 (285)
T ss_pred CcEE-eeccccccc
Confidence 7766 669999973
No 84
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=97.76 E-value=0.0021 Score=61.01 Aligned_cols=82 Identities=21% Similarity=0.143 Sum_probs=46.7
Q ss_pred eEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhh----CC-CEEEEeCcccCCCccchhhH-----HHHHHHHHHH
Q 039188 7 FKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDE----AP-GLVIYLGDVITANNIAIANA-----SLYWDQAISP 76 (341)
Q Consensus 7 ~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~p-D~vv~tGDl~~~~~~~~~~~-----~~~~~~~~~~ 76 (341)
++|+|.+|+|-.... ......+..+.+.+.++ .+ -+++-.||++++........ ...-...++.
T Consensus 1 l~IlhtnD~Hg~~~~------~gg~ar~a~~i~~~r~~~~~~~~~~l~ldaGD~~qGs~~~~~~~~~~~~~~~G~~~i~~ 74 (313)
T cd08162 1 LQLLHTSDGESGLLA------EDDAPNFSALVNALKDEAAAEYDNTLTLSSGDNFIPGPFFNASLDPLIYGDPGRADILI 74 (313)
T ss_pred CeEEEecccccCccc------cCCHHHHHHHHHHHHHhhhccCCCeEEEecCccccCchhhhhhccccccccCChHHHHH
Confidence 589999999975421 11112222222222222 33 58999999999865311000 0001355667
Q ss_pred HHhCCCCEEEEcCCCCCCC
Q 039188 77 TRARGIPWASVFGNHDDAA 95 (341)
Q Consensus 77 l~~~~iP~~~i~GNHD~~~ 95 (341)
|+..++-+ +++||||+..
T Consensus 75 mN~~g~Da-~tlGNHEFD~ 92 (313)
T cd08162 75 LNALGVQA-IALGNHEFDL 92 (313)
T ss_pred HhccCCcE-Eecccccccc
Confidence 77777764 4899999863
No 85
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=97.76 E-value=6.3e-05 Score=69.22 Aligned_cols=63 Identities=17% Similarity=0.231 Sum_probs=44.2
Q ss_pred EEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhh----hCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEE
Q 039188 10 VLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDD----EAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWA 85 (341)
Q Consensus 10 ~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~ 85 (341)
.+|+|+|-.. ..+++++++ .+.|.++++||+++.+.. +. ++++.+.+++..+.
T Consensus 2 yvIGDIHG~~---------------~~L~~LL~~i~~~~~~D~Li~lGDlVdRGp~----s~----evl~~l~~l~~~v~ 58 (257)
T cd07422 2 YAIGDIQGCY---------------DELQRLLEKINFDPAKDRLWLVGDLVNRGPD----SL----ETLRFVKSLGDSAK 58 (257)
T ss_pred EEEECCCCCH---------------HHHHHHHHhcCCCCCCCEEEEecCcCCCCcC----HH----HHHHHHHhcCCCeE
Confidence 5799999642 234444432 357999999999998763 22 45555555666789
Q ss_pred EEcCCCCCCC
Q 039188 86 SVFGNHDDAA 95 (341)
Q Consensus 86 ~i~GNHD~~~ 95 (341)
+|+||||...
T Consensus 59 ~VlGNHD~~l 68 (257)
T cd07422 59 TVLGNHDLHL 68 (257)
T ss_pred EEcCCchHHH
Confidence 9999999974
No 86
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=97.75 E-value=7.3e-05 Score=68.40 Aligned_cols=67 Identities=13% Similarity=0.122 Sum_probs=43.1
Q ss_pred eEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhh------------hCCCEEEEeCcccCCCccchhhHHHHHHHHH
Q 039188 7 FKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDD------------EAPGLVIYLGDVITANNIAIANASLYWDQAI 74 (341)
Q Consensus 7 ~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~------------~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~ 74 (341)
+|+.+++|+|-.. +.|.++++. ..-|.+|+.||+++.+.. +.+.++.++
T Consensus 1 ~~~~vIGDIHG~~---------------~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~----S~~vl~~~~ 61 (245)
T PRK13625 1 MKYDIIGDIHGCY---------------QEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPH----SLRMIEIVW 61 (245)
T ss_pred CceEEEEECccCH---------------HHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcC----hHHHHHHHH
Confidence 4789999999532 123333332 124799999999997763 333344443
Q ss_pred HHHHhCCCCEEEEcCCCCCC
Q 039188 75 SPTRARGIPWASVFGNHDDA 94 (341)
Q Consensus 75 ~~l~~~~iP~~~i~GNHD~~ 94 (341)
+.+ ..-+++++.||||..
T Consensus 62 ~~~--~~~~~~~l~GNHE~~ 79 (245)
T PRK13625 62 ELV--EKKAAYYVPGNHCNK 79 (245)
T ss_pred HHh--hCCCEEEEeCccHHH
Confidence 332 234789999999875
No 87
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=97.75 E-value=0.00098 Score=66.46 Aligned_cols=113 Identities=10% Similarity=0.124 Sum_probs=54.8
Q ss_pred eEEEEEEeCCCCC----CC--------------CCCCHHHHHHHHHHhhhhCCCCCCCcEEEEecCchhhhhhcCCCCCC
Q 039188 178 VAYLYFLDSGGGS----YP--------------QVISSEQAEWFLHKAQEINPDSRVPEIVFWHIPSKAYEKVAPKSAIE 239 (341)
Q Consensus 178 ~~~l~~LDS~~~~----~~--------------~~i~~~Ql~WL~~~L~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~~ 239 (341)
.+.+++||+.... .. .-|+++|.+||++.|++..+ ...||..=.|+............
T Consensus 263 ~~~~~~LD~R~~R~~~~~~~~~~~~~~~~~~~~~mLG~~Q~~wL~~~L~~s~a---~~kvi~s~v~~~~~~~~~~~~~~- 338 (453)
T PF09423_consen 263 LVEFFMLDTRSYRSPPPCDGPGDTCPAADDPSRTMLGEEQWDWLEDWLASSQA---TWKVIGSSVPFSPLNFPDAAEGL- 338 (453)
T ss_dssp TEEEEE--SSSS----CCCSSEE--HHHH-TT--SS-HHHHHHHHHHHHH--S---SEEEEE-SS--S---SS-SS-S--
T ss_pred ceeEEEEechhccccccccccccccccccCCccCcCCHHHHHHHHHHHhcCCC---cEEEEEeCCceeccccccccccc-
Confidence 4789999997421 11 24899999999999998652 45677766666432211000000
Q ss_pred CCccCccCCcccchhhccchHHHHHHcCCCc--eEEEeccccCCCccccc-------------CCeEEEeecCccC
Q 039188 240 RPCVGSINKESVAAQEAEMGIMDILVNRSSV--KAVFAGHNHGLDWCCPY-------------QRLWLCYARHSGY 300 (341)
Q Consensus 240 ~~~~g~~n~e~~~~~~~~~~~~~~l~~~~~V--~~v~~GH~H~n~~~~~~-------------~gi~l~~g~~tg~ 300 (341)
..-...|. ..+.+..++++.|.+. ++ .++++|-+|.... ..+ .+++++.++.++-
T Consensus 339 ~~~~d~W~----g~~~er~~Ll~~l~~~-~~~~vV~LSGDvH~~~~-~~~~~~~~~~~~~~~~~~~Ef~~s~vts~ 408 (453)
T PF09423_consen 339 PFNMDSWD----GYPAERQRLLDFLRES-GIRNVVFLSGDVHASAA-SRIPPDDADPPDGPGSVGVEFTSSSVTSP 408 (453)
T ss_dssp -EETTSGG----GSHHHHHHHHHHHHHT-T---EEEEE-SSSSEEE-EEEESSTT---TTS-EEEEEEE---SSTT
T ss_pred ccCCCchh----hCHHHHHHHHHHHHhh-CCCCEEEEecCcchhee-eecccccccccCCCCCeEEEEECCCccCC
Confidence 00001121 2344567899999764 44 3899999997432 221 1367777776653
No 88
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=97.75 E-value=0.0029 Score=65.61 Aligned_cols=89 Identities=17% Similarity=0.153 Sum_probs=48.8
Q ss_pred CeEEEEEecCCCCcCCCCCCCC-CCChhHHHHHHHHHh---hhCC-CEEEEeCcccCCCccchhhHHH-----HHHHHHH
Q 039188 6 PFKIVLFADLHFGESAWTDWGP-LQDVNSSRVMSTVLD---DEAP-GLVIYLGDVITANNIAIANASL-----YWDQAIS 75 (341)
Q Consensus 6 ~~~i~~isDlH~~~~~~~~~~~-~~~~~~~~~l~~~l~---~~~p-D~vv~tGDl~~~~~~~~~~~~~-----~~~~~~~ 75 (341)
.++|++.||+|-.-.....+.. ....--+..+..+++ ++.+ -++|-+||++++.......... ...-+.+
T Consensus 2 ~l~Il~TnDlH~~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~n~lllD~GD~~qGsp~~~~~~~~~~~~~~~~p~~~ 81 (626)
T TIGR01390 2 DLRIVETTDLHTNLMDYDYYKDKPTDKFGLTRTATLIKQARAEVKNSVLVDNGDLIQGSPLGDYMAAQGLKAGQMHPVYK 81 (626)
T ss_pred eEEEEEEcCCccCccCCcccCCCCCCCcCHHHHHHHHHHHHhhCCCeEEEECCCcCCCccchhhhhhccccCCCcChHHH
Confidence 5899999999976433210000 001111233333333 3333 5889999999987632100000 0012456
Q ss_pred HHHhCCCCEEEEcCCCCCCC
Q 039188 76 PTRARGIPWASVFGNHDDAA 95 (341)
Q Consensus 76 ~l~~~~iP~~~i~GNHD~~~ 95 (341)
.|+.++.-+ +++||||+..
T Consensus 82 ~mN~lgyDa-~tlGNHEFd~ 100 (626)
T TIGR01390 82 AMNLLKYDV-GNLGNHEFNY 100 (626)
T ss_pred HHhhcCccE-Eecccccccc
Confidence 677777764 5899999873
No 89
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=97.74 E-value=0.0032 Score=65.53 Aligned_cols=90 Identities=14% Similarity=0.144 Sum_probs=49.5
Q ss_pred CCeEEEEEecCCCCcCCCCCCCC-CCChhHHHHHHHHH---hhhCC-CEEEEeCcccCCCccchhhHHHHH-----HHHH
Q 039188 5 APFKIVLFADLHFGESAWTDWGP-LQDVNSSRVMSTVL---DDEAP-GLVIYLGDVITANNIAIANASLYW-----DQAI 74 (341)
Q Consensus 5 ~~~~i~~isDlH~~~~~~~~~~~-~~~~~~~~~l~~~l---~~~~p-D~vv~tGDl~~~~~~~~~~~~~~~-----~~~~ 74 (341)
..++|++.||+|-.-.....+.. ....--+..+..++ .++.+ -++|-.||++++....+.....-+ .-++
T Consensus 24 ~~L~IL~TnDlHg~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~n~llvD~GD~~qGsp~~~~~~~~~~~~g~~~p~i 103 (649)
T PRK09420 24 VDLRIMETTDLHSNMMDFDYYKDKPTEKFGLVRTASLIKAARAEAKNSVLVDNGDLIQGSPLGDYMAAKGLKAGDVHPVY 103 (649)
T ss_pred ceEEEEEEcccccCccCCccccCCcccccCHHHHHHHHHHHHHhCCCEEEEECCCcCCCchhhhhhhhccccCCCcchHH
Confidence 46999999999975432210000 00111122333333 33444 488999999998763110000000 1256
Q ss_pred HHHHhCCCCEEEEcCCCCCCC
Q 039188 75 SPTRARGIPWASVFGNHDDAA 95 (341)
Q Consensus 75 ~~l~~~~iP~~~i~GNHD~~~ 95 (341)
+.|+.++.- +.++||||+..
T Consensus 104 ~amN~lgyD-a~tlGNHEFd~ 123 (649)
T PRK09420 104 KAMNTLDYD-VGNLGNHEFNY 123 (649)
T ss_pred HHHHhcCCc-EEeccchhhhc
Confidence 777777776 45899999873
No 90
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=97.72 E-value=0.0021 Score=65.62 Aligned_cols=85 Identities=19% Similarity=0.169 Sum_probs=47.2
Q ss_pred eEEEEEecCCCCcCCCC----CCCCC--CChhHHHHHHHHHhh---hCC-CEEEEeCcccCCCccchhhHHHHHHHHHHH
Q 039188 7 FKIVLFADLHFGESAWT----DWGPL--QDVNSSRVMSTVLDD---EAP-GLVIYLGDVITANNIAIANASLYWDQAISP 76 (341)
Q Consensus 7 ~~i~~isDlH~~~~~~~----~~~~~--~~~~~~~~l~~~l~~---~~p-D~vv~tGDl~~~~~~~~~~~~~~~~~~~~~ 76 (341)
++|+|++|+|-.-.... ..+.. ...--+..+..++++ +.| -+++.+||++++..... ...-+..++.
T Consensus 1 ltILhtND~Hg~l~~~~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~~n~l~ldaGD~~~gs~~~~---~~~g~~~i~~ 77 (550)
T TIGR01530 1 LSIIHINDHHSHLEPEELEIALAGEQLKAAIGGFAALNAEINKLRAESKNALVLHAGDAIIGTLYFT---LFGGRADAAL 77 (550)
T ss_pred CEEEEEccccccccCcccccccCCCccccccCCHHHHHHHHHHHHhhCCCeEEEECCCCCCCccchh---hcCCHHHHHH
Confidence 58999999996532210 00000 000123344444432 334 58889999999865321 0011234566
Q ss_pred HHhCCCCEEEEcCCCCCCC
Q 039188 77 TRARGIPWASVFGNHDDAA 95 (341)
Q Consensus 77 l~~~~iP~~~i~GNHD~~~ 95 (341)
|+..++- ++++||||+..
T Consensus 78 ~N~~g~D-a~~lGNHEFd~ 95 (550)
T TIGR01530 78 MNAAGFD-FFTLGNHEFDA 95 (550)
T ss_pred HhccCCC-EEEeccccccC
Confidence 7766665 45999999973
No 91
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=97.72 E-value=7.2e-05 Score=67.19 Aligned_cols=66 Identities=20% Similarity=0.112 Sum_probs=42.7
Q ss_pred eEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhh-hCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEE
Q 039188 7 FKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDD-EAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWA 85 (341)
Q Consensus 7 ~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~ 85 (341)
-|+.++||+|-.. ..++.+.+.+.. .+.|.+++.||+++.+.. +. ++++.+.+. .++
T Consensus 17 ~ri~vigDIHG~~------------~~L~~lL~~i~~~~~~D~li~lGDlvDrGp~----s~----~vl~~l~~~--~~~ 74 (218)
T PRK11439 17 RHIWLVGDIHGCF------------EQLMRKLRHCRFDPWRDLLISVGDLIDRGPQ----SL----RCLQLLEEH--WVR 74 (218)
T ss_pred CeEEEEEcccCCH------------HHHHHHHHhcCCCcccCEEEEcCcccCCCcC----HH----HHHHHHHcC--Cce
Confidence 3899999999743 122222222222 257999999999998763 22 344444443 357
Q ss_pred EEcCCCCCC
Q 039188 86 SVFGNHDDA 94 (341)
Q Consensus 86 ~i~GNHD~~ 94 (341)
+|.||||..
T Consensus 75 ~v~GNHE~~ 83 (218)
T PRK11439 75 AVRGNHEQM 83 (218)
T ss_pred EeeCchHHH
Confidence 899999986
No 92
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=97.70 E-value=7.3e-05 Score=66.98 Aligned_cols=68 Identities=16% Similarity=0.139 Sum_probs=41.7
Q ss_pred EEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEcCC
Q 039188 11 LFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVFGN 90 (341)
Q Consensus 11 ~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~GN 90 (341)
+++|+|-.. ..+..+.+.+...++|.+|++||+++.+.. ..+.+..+.+ +.....+++++.||
T Consensus 2 ~igDiHg~~------------~~l~~~l~~~~~~~~d~li~lGD~vdrg~~----~~~~l~~l~~-~~~~~~~~~~l~GN 64 (225)
T cd00144 2 VIGDIHGCL------------DDLLRLLEKIGFPPNDKLIFLGDYVDRGPD----SVEVIDLLLA-LKILPDNVILLRGN 64 (225)
T ss_pred EEeCCCCCH------------HHHHHHHHHhCCCCCCEEEEECCEeCCCCC----cHHHHHHHHH-hcCCCCcEEEEccC
Confidence 689999431 222333333333578999999999997753 2222222222 11114589999999
Q ss_pred CCCCC
Q 039188 91 HDDAA 95 (341)
Q Consensus 91 HD~~~ 95 (341)
||...
T Consensus 65 He~~~ 69 (225)
T cd00144 65 HEDML 69 (225)
T ss_pred chhhh
Confidence 99974
No 93
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=97.66 E-value=0.00012 Score=65.84 Aligned_cols=67 Identities=22% Similarity=0.173 Sum_probs=42.8
Q ss_pred eEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHh-hhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEE
Q 039188 7 FKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLD-DEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWA 85 (341)
Q Consensus 7 ~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~ 85 (341)
-||+++||+|-.. ..++.+.+.+. ..+.|.+|+.||+++.+.. +. ++++.+.+ -.++
T Consensus 15 ~ri~visDiHg~~------------~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~----~~----~~l~~l~~--~~~~ 72 (218)
T PRK09968 15 RHIWVVGDIHGEY------------QLLQSRLHQLSFCPETDLLISVGDNIDRGPE----SL----NVLRLLNQ--PWFI 72 (218)
T ss_pred CeEEEEEeccCCH------------HHHHHHHHhcCCCCCCCEEEECCCCcCCCcC----HH----HHHHHHhh--CCcE
Confidence 4899999999632 12222222222 2467999999999997753 22 33334433 2467
Q ss_pred EEcCCCCCCC
Q 039188 86 SVFGNHDDAA 95 (341)
Q Consensus 86 ~i~GNHD~~~ 95 (341)
++.||||...
T Consensus 73 ~v~GNHE~~~ 82 (218)
T PRK09968 73 SVKGNHEAMA 82 (218)
T ss_pred EEECchHHHH
Confidence 8999999863
No 94
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.65 E-value=0.0043 Score=65.74 Aligned_cols=89 Identities=18% Similarity=0.212 Sum_probs=49.5
Q ss_pred CeEEEEEecCCCCcCCCCCCCC-CCChhHHHHHHHHHh---hhCC-CEEEEeCcccCCCccchhhHH------HHHHHHH
Q 039188 6 PFKIVLFADLHFGESAWTDWGP-LQDVNSSRVMSTVLD---DEAP-GLVIYLGDVITANNIAIANAS------LYWDQAI 74 (341)
Q Consensus 6 ~~~i~~isDlH~~~~~~~~~~~-~~~~~~~~~l~~~l~---~~~p-D~vv~tGDl~~~~~~~~~~~~------~~~~~~~ 74 (341)
.++|++.+|+|-.-.....+.. ....--+..+..+++ ++.+ -++|-.||++++......... ....-++
T Consensus 115 ~LtIL~TnDiHg~l~~~dy~~~~~~~~~GlaRlAtlI~~~Rae~~NtLllD~GD~iQGSpl~~~~a~~~~~~~g~~~P~i 194 (814)
T PRK11907 115 DVRILSTTDLHTNLVNYDYYQDKPSQTLGLAKTAVLIEEAKKENPNVVLVDNGDTIQGTPLGTYKAIVDPVEEGEQHPMY 194 (814)
T ss_pred EEEEEEEEeecCCcccccccccCccccccHHHHHHHHHHHHHhCCCEEEEecCCCCCCCcccchhhhccccccCcchHHH
Confidence 5899999999976432210100 001111233333333 3445 488999999998753211000 0001356
Q ss_pred HHHHhCCCCEEEEcCCCCCCC
Q 039188 75 SPTRARGIPWASVFGNHDDAA 95 (341)
Q Consensus 75 ~~l~~~~iP~~~i~GNHD~~~ 95 (341)
+.|+.++.- +.++||||+..
T Consensus 195 ~amN~LGyD-A~tLGNHEFDy 214 (814)
T PRK11907 195 AALEALGFD-AGTLGNHEFNY 214 (814)
T ss_pred HHHhccCCC-EEEechhhccc
Confidence 677777776 45999999974
No 95
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=97.61 E-value=0.0083 Score=61.37 Aligned_cols=82 Identities=18% Similarity=0.081 Sum_probs=47.8
Q ss_pred CCeEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhh-------hCC-CEEEEeCcccCCCccchhhHHHHHHHHHHH
Q 039188 5 APFKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDD-------EAP-GLVIYLGDVITANNIAIANASLYWDQAISP 76 (341)
Q Consensus 5 ~~~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~-------~~p-D~vv~tGDl~~~~~~~~~~~~~~~~~~~~~ 76 (341)
-+++|++++|+|-...... .+.. -+..+..++++ ..| -++|.+||.+++..... ...-...++.
T Consensus 33 ~~ltil~tnD~Hg~~~~~~-~~~~----G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs~~s~---~~~g~~~i~~ 104 (551)
T PRK09558 33 YKITILHTNDHHGHFWRNE-YGEY----GLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGVPESD---LQDAEPDFRG 104 (551)
T ss_pred eEEEEEEecccCCCccccc-cCCc----cHHHHHHHHHHHHHHhhccCCCEEEEcCCccccceEhhh---hcCCchhHHH
Confidence 3589999999997643211 1110 12223333321 134 58899999998764211 0011244567
Q ss_pred HHhCCCCEEEEcCCCCCCC
Q 039188 77 TRARGIPWASVFGNHDDAA 95 (341)
Q Consensus 77 l~~~~iP~~~i~GNHD~~~ 95 (341)
|+..++-+. ++||||+..
T Consensus 105 mN~~g~Da~-tlGNHEFD~ 122 (551)
T PRK09558 105 MNLIGYDAM-AVGNHEFDN 122 (551)
T ss_pred HhcCCCCEE-cccccccCc
Confidence 777788766 569999973
No 96
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=97.52 E-value=0.00023 Score=64.19 Aligned_cols=45 Identities=24% Similarity=0.235 Sum_probs=30.5
Q ss_pred CCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 039188 45 APGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVFGNHDDAA 95 (341)
Q Consensus 45 ~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~GNHD~~~ 95 (341)
..|.+|++||+++.+.. +.+.++.+.+ +.+. -.++++.||||...
T Consensus 33 ~~d~lvflGD~IDRGp~----S~~vl~~l~~-l~~~-~~~~~l~GNHE~~l 77 (222)
T cd07413 33 PERQVVFLGDLIDRGPE----IRELLEIVKS-MVDA-GHALAVMGNHEFNA 77 (222)
T ss_pred CCCEEEEeCcccCCCCC----HHHHHHHHHH-hhcC-CCEEEEEccCcHHH
Confidence 35899999999998763 3333333333 2222 36889999999863
No 97
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=97.51 E-value=0.00023 Score=65.96 Aligned_cols=65 Identities=20% Similarity=0.240 Sum_probs=43.7
Q ss_pred EEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhh----hCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCC
Q 039188 8 KIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDD----EAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIP 83 (341)
Q Consensus 8 ~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP 83 (341)
++.+|+|+|-.. ..+++++++ ...|.++++||+++.+.. +. ++++.+.+.+..
T Consensus 2 ~~YvIGDIHGc~---------------daL~~LL~~i~f~~~~D~l~~lGDlVdRGP~----sl----evL~~l~~l~~~ 58 (279)
T TIGR00668 2 ATYLIGDLHGCY---------------DELQALLERVEFDPGQDTLWLTGDLVARGPG----SL----EVLRYVKSLGDA 58 (279)
T ss_pred cEEEEEcccCCH---------------HHHHHHHHHhCcCCCCCEEEEeCCccCCCCC----HH----HHHHHHHhcCCC
Confidence 578999999643 223333332 356999999999998763 22 344444445555
Q ss_pred EEEEcCCCCCCC
Q 039188 84 WASVFGNHDDAA 95 (341)
Q Consensus 84 ~~~i~GNHD~~~ 95 (341)
+.+|.||||...
T Consensus 59 ~~~VlGNHD~~l 70 (279)
T TIGR00668 59 VRLVLGNHDLHL 70 (279)
T ss_pred eEEEEChhHHHH
Confidence 778999999854
No 98
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=97.45 E-value=0.0005 Score=64.02 Aligned_cols=70 Identities=27% Similarity=0.218 Sum_probs=42.4
Q ss_pred EEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhh------hCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCC
Q 039188 8 KIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDD------EAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARG 81 (341)
Q Consensus 8 ~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~------~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (341)
++..|+|+|-... .++.+.+.+.+ ...+.+|+.||+++.+.. +...++.+.+ +....
T Consensus 3 ~iyaIGDIHG~~d------------~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPd----S~eVld~L~~-l~~~~ 65 (304)
T cd07421 3 VVICVGDIHGYIS------------KLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPE----TRKVIDFLIS-LPEKH 65 (304)
T ss_pred eEEEEEeccCCHH------------HHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCC----HHHHHHHHHH-hhhcc
Confidence 6899999997532 22322222221 135789999999998763 3333333333 22222
Q ss_pred --CCEEEEcCCCCCC
Q 039188 82 --IPWASVFGNHDDA 94 (341)
Q Consensus 82 --iP~~~i~GNHD~~ 94 (341)
..++++.||||..
T Consensus 66 ~~~~vv~LrGNHE~~ 80 (304)
T cd07421 66 PKQRHVFLCGNHDFA 80 (304)
T ss_pred cccceEEEecCChHH
Confidence 2578999999976
No 99
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=97.43 E-value=0.00086 Score=56.12 Aligned_cols=80 Identities=20% Similarity=0.262 Sum_probs=47.6
Q ss_pred EEEEEecCCCCcCCCCCCCCCCChhH--HHHHHHHHhhhCC-CEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCE
Q 039188 8 KIVLFADLHFGESAWTDWGPLQDVNS--SRVMSTVLDDEAP-GLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPW 84 (341)
Q Consensus 8 ~i~~isDlH~~~~~~~~~~~~~~~~~--~~~l~~~l~~~~p-D~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~ 84 (341)
.+-.+||+||+-....+.-|..+.+- ...|....+.-+| |.|-+.||++-+... ...+..+++ .++-..
T Consensus 5 mmyfisDtHfgh~nvi~~~pfsn~~ehd~vil~N~nntv~p~D~lwhLGDl~~~~n~-----~~~a~~Ile---rLnGrk 76 (186)
T COG4186 5 MMYFISDTHFGHKNVISMRPFSNPDEHDEVILSNWNNTVGPDDVLWHLGDLSSGANR-----ERAAGLILE---RLNGRK 76 (186)
T ss_pred EEEEecccccCCcceeecCCCCCHHHHhHHHHHhHHhcCCccceEEEecccccccch-----hhHHHHHHH---HcCCcE
Confidence 57789999999865322112211111 1122222233466 799999999987763 112234444 455667
Q ss_pred EEEcCCCCCCC
Q 039188 85 ASVFGNHDDAA 95 (341)
Q Consensus 85 ~~i~GNHD~~~ 95 (341)
.+|+||||-..
T Consensus 77 hlv~GNhDk~~ 87 (186)
T COG4186 77 HLVPGNHDKCH 87 (186)
T ss_pred EEeeCCCCCCc
Confidence 99999999974
No 100
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.05 E-value=0.14 Score=47.08 Aligned_cols=71 Identities=14% Similarity=0.143 Sum_probs=46.3
Q ss_pred EEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEE
Q 039188 8 KIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASV 87 (341)
Q Consensus 8 ~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i 87 (341)
||+.+.|+=-.+. .....+.|.++.++.++|++|..||.+.++... . ....+.|.+.++-+. +
T Consensus 1 ~ilfigdi~g~~G---------~~~~~~~l~~lk~~~~~D~vi~NgEn~~gg~gl----~---~~~~~~L~~~G~D~i-T 63 (255)
T cd07382 1 KILFIGDIVGKPG---------RKAVKEHLPKLKKEYKIDFVIANGENAAGGKGI----T---PKIAKELLSAGVDVI-T 63 (255)
T ss_pred CEEEEEeCCCHHH---------HHHHHHHHHHHHHHCCCCEEEECCccccCCCCC----C---HHHHHHHHhcCCCEE-E
Confidence 4677777754321 112334555555567899999999999865321 1 355667777888866 5
Q ss_pred cCCCCCCC
Q 039188 88 FGNHDDAA 95 (341)
Q Consensus 88 ~GNHD~~~ 95 (341)
.|||++..
T Consensus 64 lGNH~fD~ 71 (255)
T cd07382 64 MGNHTWDK 71 (255)
T ss_pred ecccccCc
Confidence 59998863
No 101
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=97.01 E-value=0.0028 Score=58.26 Aligned_cols=80 Identities=20% Similarity=0.221 Sum_probs=50.0
Q ss_pred EEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhh-----------hCCCEEEEeCcccCCCccch-------------
Q 039188 8 KIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDD-----------EAPGLVIYLGDVITANNIAI------------- 63 (341)
Q Consensus 8 ~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~-----------~~pD~vv~tGDl~~~~~~~~------------- 63 (341)
.|+.+||+|+|... .....++.|.+-|.- .+...+|+.||.+++.....
T Consensus 1 ~i~~vSgL~ig~~~-------~~~~~l~ll~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~~~~~~~~~~~~~~~~~ 73 (257)
T cd07387 1 YIALVSGLGLGGNA-------ESSLSLQLLVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKSTQGKDSQTKARYLTKKS 73 (257)
T ss_pred CEEEEcccccCCCc-------cchHHHHHHHHHhcCCCCCccccccccceEEEEEECCcccccccccchhhhhhcccccc
Confidence 37999999999753 122344555555531 13457999999999653210
Q ss_pred ----hhHHHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 039188 64 ----ANASLYWDQAISPTRARGIPWASVFGNHDDAA 95 (341)
Q Consensus 64 ----~~~~~~~~~~~~~l~~~~iP~~~i~GNHD~~~ 95 (341)
.+....++.++..+. ..+|+.++|||||-..
T Consensus 74 ~~~~~~~~~~ld~~l~~l~-~~i~V~imPG~~Dp~~ 108 (257)
T cd07387 74 SAASVEAVKELDNFLSQLA-SSVPVDLMPGEFDPAN 108 (257)
T ss_pred chhhHHHHHHHHHHHHhhh-cCCeEEECCCCCCccc
Confidence 011122344444443 3799999999999986
No 102
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=96.90 E-value=0.0019 Score=63.35 Aligned_cols=81 Identities=19% Similarity=0.226 Sum_probs=50.5
Q ss_pred CCeEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHh--------hhCCCEEEEeCcccCCCccchhh--------HHH
Q 039188 5 APFKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLD--------DEAPGLVIYLGDVITANNIAIAN--------ASL 68 (341)
Q Consensus 5 ~~~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~--------~~~pD~vv~tGDl~~~~~~~~~~--------~~~ 68 (341)
..++++++||+|.|+... ....+...++ +.+...++++||++++-..-..+ -.+
T Consensus 224 e~v~v~~isDih~GSk~F----------~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~ 293 (481)
T COG1311 224 ERVYVALISDIHRGSKEF----------LEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYE 293 (481)
T ss_pred cceEEEEEeeeecccHHH----------HHHHHHHHHHHhcCCcccccceEEEEEecccccccccccCcccccccccchH
Confidence 458899999999997532 1122222222 23457999999999965432111 112
Q ss_pred HHHHHHHHHHhC--CCCEEEEcCCCCCCC
Q 039188 69 YWDQAISPTRAR--GIPWASVFGNHDDAA 95 (341)
Q Consensus 69 ~~~~~~~~l~~~--~iP~~~i~GNHD~~~ 95 (341)
.+.++.+.|.+. .+.++++|||||...
T Consensus 294 qy~~~A~~L~~vp~~I~v~i~PGnhDa~r 322 (481)
T COG1311 294 QYEELAEFLDQVPEHIKVFIMPGNHDAVR 322 (481)
T ss_pred HHHHHHHHHhhCCCCceEEEecCCCCccc
Confidence 244555555543 567999999999974
No 103
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=96.83 E-value=0.0028 Score=56.28 Aligned_cols=77 Identities=17% Similarity=0.177 Sum_probs=45.6
Q ss_pred EEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHh----hhCCCEEEEeCcccCCCccchh---------hHHHHHHHHHH
Q 039188 9 IVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLD----DEAPGLVIYLGDVITANNIAIA---------NASLYWDQAIS 75 (341)
Q Consensus 9 i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~----~~~pD~vv~tGDl~~~~~~~~~---------~~~~~~~~~~~ 75 (341)
|+++||+|++.+. ..++.+++.+. +.+|+.+|++|++++....... .....+.++.+
T Consensus 1 Iv~~Sg~~~~~~~----------~~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (209)
T PF04042_consen 1 IVFASGPFLDSDN----------LSLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDS 70 (209)
T ss_dssp EEEEES--CTTT-----------HHHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHH
T ss_pred CEEEecCccCCCH----------hHHHHHHHHHHhccccCCCcEEEEeCCCcCccccccccccccccccccHHHHHHHHH
Confidence 7899999998532 24566666664 5579999999999996432210 11122334444
Q ss_pred HHHhC--CCCEEEEcCCCCCCC
Q 039188 76 PTRAR--GIPWASVFGNHDDAA 95 (341)
Q Consensus 76 ~l~~~--~iP~~~i~GNHD~~~ 95 (341)
.+.+. .+++++|||+||...
T Consensus 71 ~~~~i~~~~~vvlvPg~~D~~~ 92 (209)
T PF04042_consen 71 FLESILPSTQVVLVPGPNDPTS 92 (209)
T ss_dssp HHCCCHCCSEEEEE--TTCTT-
T ss_pred HHhhcccccEEEEeCCCccccc
Confidence 44433 589999999999975
No 104
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=96.67 E-value=0.25 Score=45.70 Aligned_cols=71 Identities=15% Similarity=0.161 Sum_probs=47.1
Q ss_pred eEEEEEecCCCCcCCCCCCCCCCChhH-HHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEE
Q 039188 7 FKIVLFADLHFGESAWTDWGPLQDVNS-SRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWA 85 (341)
Q Consensus 7 ~~i~~isDlH~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~ 85 (341)
+||+.+.|+=-.+ .+.. .+.|.++.++.++||+|..||.+.++... . .+..+.|.+.++-+.
T Consensus 1 m~ilfiGDi~G~~----------Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi----~---~~~~~~L~~~GvDvi 63 (266)
T TIGR00282 1 IKFLFIGDVYGKA----------GRKIVKNNLPQLKSKYQADLVIANGENTTHGKGL----T---LKIYEFLKQSGVNYI 63 (266)
T ss_pred CeEEEEEecCCHH----------HHHHHHHHHHHHHHhCCCCEEEEcCcccCCCCCC----C---HHHHHHHHhcCCCEE
Confidence 5789999986322 1222 23444444556899999999999765211 1 355566777899877
Q ss_pred EEcCCCCCCC
Q 039188 86 SVFGNHDDAA 95 (341)
Q Consensus 86 ~i~GNHD~~~ 95 (341)
.+ |||....
T Consensus 64 T~-GNH~~Dk 72 (266)
T TIGR00282 64 TM-GNHTWFQ 72 (266)
T ss_pred Ec-cchhccC
Confidence 55 9999974
No 105
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=96.65 E-value=0.0044 Score=57.26 Aligned_cols=51 Identities=22% Similarity=0.131 Sum_probs=31.0
Q ss_pred hCCCEEEEeCcccCCCccchhhH---------HHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 039188 44 EAPGLVIYLGDVITANNIAIANA---------SLYWDQAISPTRARGIPWASVFGNHDDA 94 (341)
Q Consensus 44 ~~pD~vv~tGDl~~~~~~~~~~~---------~~~~~~~~~~l~~~~iP~~~i~GNHD~~ 94 (341)
.++|+||++||+.......+.++ ...|.+.++-..+..+|+++|.||||..
T Consensus 27 ~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~~t~fi~GNHE~~ 86 (262)
T cd00844 27 TKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPILTIFIGGNHEAS 86 (262)
T ss_pred CCCcEEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCeeEEEECCCCCCH
Confidence 46899999999965433211110 0112233333444678889999999975
No 106
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=96.57 E-value=0.0085 Score=55.66 Aligned_cols=72 Identities=13% Similarity=0.102 Sum_probs=44.1
Q ss_pred EEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEE
Q 039188 8 KIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASV 87 (341)
Q Consensus 8 ~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i 87 (341)
++++++|+|-... +..+.+ +.......+.+|+.||+++.+.. ..+.+..++.......-.++.+
T Consensus 29 ~i~vvGDiHG~~~-----------~l~~ll-~~~~~~~~~~~vfLGD~VDrG~~----s~e~l~~l~~lk~~~p~~v~ll 92 (271)
T smart00156 29 PVTVCGDIHGQFD-----------DLLRLF-DLNGPPPDTNYVFLGDYVDRGPF----SIEVILLLFALKILYPNRVVLL 92 (271)
T ss_pred CEEEEEeCcCCHH-----------HHHHHH-HHcCCCCCceEEEeCCccCCCCC----hHHHHHHHHHHHhcCCCCEEEE
Confidence 6889999996421 122222 22223456899999999997763 2333333333222334468999
Q ss_pred cCCCCCCC
Q 039188 88 FGNHDDAA 95 (341)
Q Consensus 88 ~GNHD~~~ 95 (341)
.||||...
T Consensus 93 rGNHE~~~ 100 (271)
T smart00156 93 RGNHESRS 100 (271)
T ss_pred eccccHHH
Confidence 99999974
No 107
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=96.33 E-value=0.015 Score=55.04 Aligned_cols=72 Identities=14% Similarity=0.062 Sum_probs=43.7
Q ss_pred EEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEE
Q 039188 8 KIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASV 87 (341)
Q Consensus 8 ~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i 87 (341)
++++++|+|-... +..+.+ +.......+.+|+.||.++.+.. +.+.+..++.......--++.+
T Consensus 44 ~i~ViGDIHG~~~-----------dL~~l~-~~~g~~~~~~ylFLGDyVDRG~~----s~Evi~lL~~lki~~p~~v~lL 107 (305)
T cd07416 44 PVTVCGDIHGQFY-----------DLLKLF-EVGGSPANTRYLFLGDYVDRGYF----SIECVLYLWALKILYPKTLFLL 107 (305)
T ss_pred CEEEEEeCCCCHH-----------HHHHHH-HhcCCCCCceEEEECCccCCCCC----hHHHHHHHHHHHhhcCCCEEEE
Confidence 5889999996421 122222 22222345899999999998763 2333333333222233468899
Q ss_pred cCCCCCCC
Q 039188 88 FGNHDDAA 95 (341)
Q Consensus 88 ~GNHD~~~ 95 (341)
.||||...
T Consensus 108 RGNHE~~~ 115 (305)
T cd07416 108 RGNHECRH 115 (305)
T ss_pred eCCCcHHH
Confidence 99999963
No 108
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=96.07 E-value=0.048 Score=50.67 Aligned_cols=82 Identities=13% Similarity=0.093 Sum_probs=54.7
Q ss_pred CCCCeEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhh--------CCCEEEEeCcccCCC----ccchhhHHHHH
Q 039188 3 AGAPFKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDE--------APGLVIYLGDVITAN----NIAIANASLYW 70 (341)
Q Consensus 3 ~~~~~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~--------~pD~vv~tGDl~~~~----~~~~~~~~~~~ 70 (341)
++...+|+++||+|+.. ..+++.|++++... .|-.+|++|+.+... ........+.+
T Consensus 24 ~~~~~~~VilSDV~LD~-----------p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~~~~~~~~~yk~~F 92 (291)
T PTZ00235 24 NDKRHNWIIMHDVYLDS-----------PYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFDYNRNFHKVYIKGF 92 (291)
T ss_pred CCCceEEEEEEeeccCC-----------HHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCcccCCCCchHHHHHHH
Confidence 34568999999999964 35777888777643 288999999998753 11111223445
Q ss_pred HHHHH-HHHh-----CCCCEEEEcCCCCCCC
Q 039188 71 DQAIS-PTRA-----RGIPWASVFGNHDDAA 95 (341)
Q Consensus 71 ~~~~~-~l~~-----~~iP~~~i~GNHD~~~ 95 (341)
+++.. .+.+ ...-+++|||-.|-..
T Consensus 93 d~La~llls~fp~L~~~s~fVFVPGpnDPw~ 123 (291)
T PTZ00235 93 EKLSVMLISKFKLILEHCYLIFIPGINDPCA 123 (291)
T ss_pred HHHHHHHHHhChHHHhcCeEEEECCCCCCCc
Confidence 55543 2322 2577999999999853
No 109
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=96.00 E-value=0.015 Score=55.30 Aligned_cols=69 Identities=13% Similarity=0.067 Sum_probs=42.7
Q ss_pred EEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhh----CCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCC
Q 039188 8 KIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDE----APGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIP 83 (341)
Q Consensus 8 ~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP 83 (341)
+++++.|+|-.. ..+.++++.. ..+..|+.||.+|++.. +.+.+.-++..-....-.
T Consensus 52 ~~~vvGDiHG~~---------------~dL~~il~~~g~~~~~~~~lFLGDyVDRG~~----s~Evl~ll~~lk~~~p~~ 112 (321)
T cd07420 52 QVTICGDLHGKL---------------DDLFLIFYKNGLPSPENPYVFNGDFVDRGKR----SIEILIILFAFFLVYPNE 112 (321)
T ss_pred CeEEEEeCCCCH---------------HHHHHHHHHcCCCCccceEEEeccccCCCCC----cHHHHHHHHHHhhcCCCc
Confidence 688999999643 1233333322 22689999999998763 233333333221223345
Q ss_pred EEEEcCCCCCCC
Q 039188 84 WASVFGNHDDAA 95 (341)
Q Consensus 84 ~~~i~GNHD~~~ 95 (341)
++++.|||+...
T Consensus 113 v~llRGNHE~~~ 124 (321)
T cd07420 113 VHLNRGNHEDHI 124 (321)
T ss_pred EEEecCchhhhh
Confidence 889999999975
No 110
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=95.97 E-value=0.021 Score=55.34 Aligned_cols=70 Identities=16% Similarity=0.117 Sum_probs=42.4
Q ss_pred eEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhh---hCC-CEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCC
Q 039188 7 FKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDD---EAP-GLVIYLGDVITANNIAIANASLYWDQAISPTRARGI 82 (341)
Q Consensus 7 ~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~p-D~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~i 82 (341)
-++.++.|+|-.. . .+.++++. ... +.+|+.||+++.+.. +.+.+..++.......-
T Consensus 66 ~~i~VvGDIHG~~------------~---dL~~ll~~~g~~~~~~~ylFLGDyVDRGp~----SlEvl~lL~~lki~~p~ 126 (377)
T cd07418 66 CEVVVVGDVHGQL------------H---DVLFLLEDAGFPDQNRFYVFNGDYVDRGAW----GLETFLLLLSWKVLLPD 126 (377)
T ss_pred CCEEEEEecCCCH------------H---HHHHHHHHhCCCCCCceEEEeccccCCCCC----hHHHHHHHHHHhhccCC
Confidence 3689999999642 1 22233332 223 469999999997763 23333333322222334
Q ss_pred CEEEEcCCCCCCC
Q 039188 83 PWASVFGNHDDAA 95 (341)
Q Consensus 83 P~~~i~GNHD~~~ 95 (341)
-++++.||||...
T Consensus 127 ~v~lLRGNHE~~~ 139 (377)
T cd07418 127 RVYLLRGNHESKF 139 (377)
T ss_pred eEEEEeeeccccc
Confidence 5889999999975
No 111
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=95.91 E-value=0.025 Score=52.91 Aligned_cols=72 Identities=14% Similarity=0.118 Sum_probs=42.5
Q ss_pred EEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEE
Q 039188 8 KIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASV 87 (341)
Q Consensus 8 ~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i 87 (341)
.+.+++|+|-... ++.+.+. .......+.+|+.||.++.+.. +.+.+..++.......-.++.+
T Consensus 43 ~i~vvGDIHG~~~-----------dL~~ll~-~~~~~~~~~~lfLGDyVDRG~~----s~evl~ll~~lk~~~p~~v~ll 106 (285)
T cd07415 43 PVTVCGDIHGQFY-----------DLLELFR-VGGDPPDTNYLFLGDYVDRGYY----SVETFLLLLALKVRYPDRITLL 106 (285)
T ss_pred CEEEEEeCCCCHH-----------HHHHHHH-HcCCCCCCeEEEEeEECCCCcC----HHHHHHHHHHHhhcCCCcEEEE
Confidence 4788999996321 1222222 2222345789999999997753 2333333332212234468999
Q ss_pred cCCCCCCC
Q 039188 88 FGNHDDAA 95 (341)
Q Consensus 88 ~GNHD~~~ 95 (341)
.||||...
T Consensus 107 rGNHE~~~ 114 (285)
T cd07415 107 RGNHESRQ 114 (285)
T ss_pred ecccchHh
Confidence 99999874
No 112
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=95.89 E-value=0.077 Score=53.48 Aligned_cols=61 Identities=20% Similarity=0.227 Sum_probs=40.4
Q ss_pred HHHHHHHHHhhhhCCCCCCCcEEEEecCchhhhhhcCCCCCCCCccCccCCcccchhhccchHHHHHHcCCCceE-EEec
Q 039188 198 EQAEWFLHKAQEINPDSRVPEIVFWHIPSKAYEKVAPKSAIERPCVGSINKESVAAQEAEMGIMDILVNRSSVKA-VFAG 276 (341)
Q Consensus 198 ~Ql~WL~~~L~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~~~~~~g~~n~e~~~~~~~~~~~~~~l~~~~~V~~-v~~G 276 (341)
.|.+|....++.-+ ..-+|++.|.|...... |. ....++...+|++.. ||-|
T Consensus 212 ~~~~~~~~m~~~~~---idlii~lgH~~~~~~~e--------------~~----------~~~~~ir~~~p~t~IqviGG 264 (602)
T KOG4419|consen 212 TQSEWEQDMVNTTD---IDLIIALGHSPVRDDDE--------------WK----------SLHAEIRKVHPNTPIQVIGG 264 (602)
T ss_pred hccchHHHHhhccC---ccEEEEecccccccchh--------------hh----------hHHHHHhhhCCCCceEEECc
Confidence 36788888887632 34588888988853211 11 123344445677776 9999
Q ss_pred cccCCCccc
Q 039188 277 HNHGLDWCC 285 (341)
Q Consensus 277 H~H~n~~~~ 285 (341)
|.|..++..
T Consensus 265 Hshird~a~ 273 (602)
T KOG4419|consen 265 HSHIRDFAV 273 (602)
T ss_pred hhhhhhhhh
Confidence 999999865
No 113
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=95.84 E-value=0.025 Score=53.14 Aligned_cols=72 Identities=14% Similarity=0.078 Sum_probs=42.1
Q ss_pred EEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEE
Q 039188 8 KIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASV 87 (341)
Q Consensus 8 ~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i 87 (341)
.+++++|+|-... ++.+.+. .......+-+|+.||+++.+... .+.+..++..-....-.++++
T Consensus 51 ~i~viGDIHG~~~-----------~L~~l~~-~~~~~~~~~~lfLGDyVDRG~~s----~e~i~ll~~lk~~~p~~i~ll 114 (293)
T cd07414 51 PLKICGDIHGQYY-----------DLLRLFE-YGGFPPESNYLFLGDYVDRGKQS----LETICLLLAYKIKYPENFFLL 114 (293)
T ss_pred ceEEEEecCCCHH-----------HHHHHHH-hcCCCCcceEEEEeeEecCCCCc----HHHHHHHHHhhhhCCCcEEEE
Confidence 5888999995321 1222222 22223457899999999977532 222223332212223358999
Q ss_pred cCCCCCCC
Q 039188 88 FGNHDDAA 95 (341)
Q Consensus 88 ~GNHD~~~ 95 (341)
.||||...
T Consensus 115 rGNHE~~~ 122 (293)
T cd07414 115 RGNHECAS 122 (293)
T ss_pred ecccchhh
Confidence 99999975
No 114
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=95.60 E-value=0.03 Score=53.15 Aligned_cols=72 Identities=14% Similarity=0.076 Sum_probs=41.6
Q ss_pred EEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEE
Q 039188 8 KIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASV 87 (341)
Q Consensus 8 ~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i 87 (341)
++++++|+|-... ++.+.+ +.......+-.|+.||.++.+... .+.+..++.......-.++++
T Consensus 60 ~i~vvGDIHG~~~-----------dL~~l~-~~~g~~~~~~ylfLGDyVDRG~~s----~evl~ll~~lki~~p~~v~ll 123 (320)
T PTZ00480 60 PLKICGDVHGQYF-----------DLLRLF-EYGGYPPESNYLFLGDYVDRGKQS----LETICLLLAYKIKYPENFFLL 123 (320)
T ss_pred CeEEEeecccCHH-----------HHHHHH-HhcCCCCcceEEEeceecCCCCCc----HHHHHHHHHhcccCCCceEEE
Confidence 4888999995321 122222 222223457889999999977532 222223332212223358999
Q ss_pred cCCCCCCC
Q 039188 88 FGNHDDAA 95 (341)
Q Consensus 88 ~GNHD~~~ 95 (341)
.||||...
T Consensus 124 RGNHE~~~ 131 (320)
T PTZ00480 124 RGNHECAS 131 (320)
T ss_pred ecccchhh
Confidence 99999975
No 115
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=95.37 E-value=0.057 Score=50.96 Aligned_cols=72 Identities=13% Similarity=0.085 Sum_probs=42.0
Q ss_pred EEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEE
Q 039188 8 KIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASV 87 (341)
Q Consensus 8 ~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i 87 (341)
.+.+++|+|-... ++.+.+. .+.....+.+|+.||.++.+.. ..+.+..++.......--++.+
T Consensus 44 ~i~vvGDIHG~~~-----------~L~~l~~-~~~~~~~~~~lfLGDyVDRG~~----s~evl~ll~~lk~~~p~~v~ll 107 (303)
T PTZ00239 44 PVNVCGDIHGQFY-----------DLQALFK-EGGDIPNANYIFIGDFVDRGYN----SVETMEYLLCLKVKYPGNITLL 107 (303)
T ss_pred CEEEEEeCCCCHH-----------HHHHHHH-hcCCCCCceEEEeeeEcCCCCC----HHHHHHHHHHhhhcCCCcEEEE
Confidence 3788999996321 1222222 1222345789999999998763 2333333332212223348899
Q ss_pred cCCCCCCC
Q 039188 88 FGNHDDAA 95 (341)
Q Consensus 88 ~GNHD~~~ 95 (341)
.||||...
T Consensus 108 rGNHE~~~ 115 (303)
T PTZ00239 108 RGNHESRQ 115 (303)
T ss_pred ecccchHH
Confidence 99999975
No 116
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=95.32 E-value=0.079 Score=50.24 Aligned_cols=44 Identities=16% Similarity=0.120 Sum_probs=28.4
Q ss_pred EEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 039188 48 LVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVFGNHDDAA 95 (341)
Q Consensus 48 ~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~GNHD~~~ 95 (341)
-+|+.||+++.+.. ..+.+..++.......-.++.+.||||...
T Consensus 85 ~~vfLGDyVDRGp~----s~evl~ll~~lk~~~p~~v~lLRGNHE~~~ 128 (311)
T cd07419 85 DYLFLGDYVDRGSN----SLETICLLLALKVKYPNQIHLIRGNHEDRD 128 (311)
T ss_pred eEEEECCccCCCCC----hHHHHHHHHHhhhcCCCcEEEeccccchHH
Confidence 47899999997763 233333333222223446889999999864
No 117
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=95.31 E-value=0.042 Score=52.19 Aligned_cols=70 Identities=13% Similarity=0.070 Sum_probs=42.0
Q ss_pred eEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhh----CCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCC
Q 039188 7 FKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDE----APGLVIYLGDVITANNIAIANASLYWDQAISPTRARGI 82 (341)
Q Consensus 7 ~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~i 82 (341)
-++.++.|+|-.. ..+.+++... .-|.+|+.||.+|.+.. +.+.+..++.......-
T Consensus 60 ~~~~VvGDIHG~~---------------~dL~~ll~~~g~~~~~~~ylFLGDyVDRG~~----S~Evl~ll~~lki~~p~ 120 (316)
T cd07417 60 EKITVCGDTHGQF---------------YDLLNIFELNGLPSETNPYLFNGDFVDRGSF----SVEVILTLFAFKLLYPN 120 (316)
T ss_pred ceeEEeecccCCH---------------HHHHHHHHhcCCCCccCeEEEEeeEecCCCC----hHHHHHHHHHhhhccCC
Confidence 3688999999642 1223333322 22589999999998763 23333333322122234
Q ss_pred CEEEEcCCCCCCC
Q 039188 83 PWASVFGNHDDAA 95 (341)
Q Consensus 83 P~~~i~GNHD~~~ 95 (341)
-++.+.|||+...
T Consensus 121 ~v~lLRGNHE~~~ 133 (316)
T cd07417 121 HFHLNRGNHETDN 133 (316)
T ss_pred ceEEEeeccchHH
Confidence 5788999999864
No 118
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=95.23 E-value=0.046 Score=51.36 Aligned_cols=71 Identities=14% Similarity=0.084 Sum_probs=39.7
Q ss_pred EEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEc
Q 039188 9 IVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVF 88 (341)
Q Consensus 9 i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~ 88 (341)
+.+++|+|-... ++.+.++. +.....+-+|+.||.++.+.. +.+.+..++..-....-.++.+.
T Consensus 54 ~~ViGDIHG~~~-----------~L~~l~~~-~~~~~~~~~lfLGDyVDRG~~----s~evl~ll~~lk~~~p~~v~llr 117 (294)
T PTZ00244 54 VRVCGDTHGQYY-----------DLLRIFEK-CGFPPYSNYLFLGDYVDRGKH----SVETITLQFCYKIVYPENFFLLR 117 (294)
T ss_pred ceeeccCCCCHH-----------HHHHHHHH-cCCCCcccEEEeeeEecCCCC----HHHHHHHHHHHhhccCCeEEEEe
Confidence 677889995321 12222222 122234578899999998763 22222222211111244689999
Q ss_pred CCCCCCC
Q 039188 89 GNHDDAA 95 (341)
Q Consensus 89 GNHD~~~ 95 (341)
||||...
T Consensus 118 GNHE~~~ 124 (294)
T PTZ00244 118 GNHECAS 124 (294)
T ss_pred cccchHh
Confidence 9999874
No 119
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=95.15 E-value=0.21 Score=49.27 Aligned_cols=96 Identities=11% Similarity=0.226 Sum_probs=56.0
Q ss_pred ceEEEEEEeCCCCC----C---------------CCCCCHHHHHHHHHHhhhhCCCCCCCcEEEEecCchhhhhhcCCCC
Q 039188 177 AVAYLYFLDSGGGS----Y---------------PQVISSEQAEWFLHKAQEINPDSRVPEIVFWHIPSKAYEKVAPKSA 237 (341)
Q Consensus 177 ~~~~l~~LDS~~~~----~---------------~~~i~~~Ql~WL~~~L~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~ 237 (341)
+.+.+.|||+..+. + ..-++++|.+||+..|.+.+. .+.++..-+|+-........-.
T Consensus 300 ~La~~~~LDtR~YR~dqp~~dg~~~~~q~~~~~~~~mlG~~QeqWLk~~L~~Ska---tWnVia~q~~~~~~~~d~~~a~ 376 (522)
T COG3540 300 PLADLFVLDTRSYRTDQPCGDGNPPNCQAVAGSAATMLGEQQEQWLKRGLGASKA---TWNVIAQQMPLGLVVFDGSPAT 376 (522)
T ss_pred cccceeeeehhhhccccccCCCCcchhhhhhCccccchhhHHHHHHHhhhhhcch---hhhhhhhhcceeEeecCCCccc
Confidence 56789999986432 1 123889999999999998653 4566777777642211000000
Q ss_pred CCCCc-cCccCCcccchhhccchHHHHHHcCCCce--EEEeccccC
Q 039188 238 IERPC-VGSINKESVAAQEAEMGIMDILVNRSSVK--AVFAGHNHG 280 (341)
Q Consensus 238 ~~~~~-~g~~n~e~~~~~~~~~~~~~~l~~~~~V~--~v~~GH~H~ 280 (341)
.+... ...|+ ..+..+++++..|++. ++. +++.|-+|.
T Consensus 377 ~~~~a~~D~wd----Gy~~~RerLl~fi~~~-~~~N~V~LtgDvH~ 417 (522)
T COG3540 377 EGQEANADGWD----GYPAGRERLLRFIADR-KIRNTVVLTGDVHY 417 (522)
T ss_pred cCccccccCcC----CCcccHHHHHHHHHhc-CCCCcEEEechhHH
Confidence 00000 01121 2234457899988864 333 899999996
No 120
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=94.58 E-value=0.074 Score=44.92 Aligned_cols=55 Identities=13% Similarity=0.093 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhh-CCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEcCCCC
Q 039188 33 SSRVMSTVLDDE-APGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVFGNHD 92 (341)
Q Consensus 33 ~~~~l~~~l~~~-~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~GNHD 92 (341)
.++.++++..+. +.|++|+.||+...... ...+..+...-.+..+|.|++-|||.
T Consensus 13 ~~~kv~~~~~k~gpFd~~ic~Gdff~~~~~-----~~~~~~y~~g~~~~pipTyf~ggn~~ 68 (150)
T cd07380 13 LFEKVNTINKKKGPFDALLCVGDFFGDDED-----DEELEAYKDGSKKVPIPTYFLGGNNP 68 (150)
T ss_pred HHHHHHHHhcccCCeeEEEEecCccCCccc-----hhhHHHHhcCCccCCCCEEEECCCCC
Confidence 445555554433 56999999999875442 12345666666667899999999996
No 121
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=93.51 E-value=3.4 Score=37.79 Aligned_cols=53 Identities=13% Similarity=0.087 Sum_probs=29.6
Q ss_pred HHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 039188 35 RVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVFGNHDDAA 95 (341)
Q Consensus 35 ~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~GNHD~~~ 95 (341)
+.|.++.++.++||||..|....++.-- + .+..+.|.+.++-++ +.|||=...
T Consensus 17 ~~Lp~L~~~~~~DfVIaNgENaa~G~Gi---t----~~~~~~L~~~GvDvi-T~GNH~wdk 69 (253)
T PF13277_consen 17 EHLPELKEEYGIDFVIANGENAAGGFGI---T----PKIAEELFKAGVDVI-TMGNHIWDK 69 (253)
T ss_dssp HHHHHHGG--G-SEEEEE-TTTTTTSS---------HHHHHHHHHHT-SEE-E--TTTTSS
T ss_pred HHHHHHHhhcCCCEEEECCcccCCCCCC---C----HHHHHHHHhcCCCEE-ecCcccccC
Confidence 4455555667999999999999855421 1 233444556788866 999998763
No 122
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=91.39 E-value=0.31 Score=38.31 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=17.5
Q ss_pred HHHHHHcCCCceEEEeccccCCCc
Q 039188 260 IMDILVNRSSVKAVFAGHNHGLDW 283 (341)
Q Consensus 260 ~~~~l~~~~~V~~v~~GH~H~n~~ 283 (341)
.+..+....++..+|+||.|.+..
T Consensus 94 ~~~~~~~~~~~~~~~~GH~H~~~~ 117 (131)
T cd00838 94 ALLELLEKYGVDLVLSGHTHVYER 117 (131)
T ss_pred HHHHHHHHhCCCEEEeCCeecccc
Confidence 344444456899999999998764
No 123
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=91.11 E-value=3.8 Score=36.99 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=26.5
Q ss_pred hHHHHHHcCCCceEEEeccccCCCcccccCCeEEEeec
Q 039188 259 GIMDILVNRSSVKAVFAGHNHGLDWCCPYQRLWLCYAR 296 (341)
Q Consensus 259 ~~~~~l~~~~~V~~v~~GH~H~n~~~~~~~gi~l~~g~ 296 (341)
.+.+.+.+ .++.+|+.||.|.-.-+..++|..++|+=
T Consensus 198 ~la~~l~~-~G~D~IiG~H~Hv~q~~E~~~~~~I~YSl 234 (239)
T cd07381 198 ELARALID-AGADLVIGHHPHVLQGIEIYKGKLIFYSL 234 (239)
T ss_pred HHHHHHHH-CCCCEEEcCCCCcCCCeEEECCEEEEEcC
Confidence 34445544 58999999999986555567777777753
No 124
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=89.69 E-value=16 Score=33.36 Aligned_cols=70 Identities=13% Similarity=0.127 Sum_probs=46.3
Q ss_pred eEEEEEecCCCCcCCCCCCCCCCChhH-HHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEE
Q 039188 7 FKIVLFADLHFGESAWTDWGPLQDVNS-SRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWA 85 (341)
Q Consensus 7 ~~i~~isDlH~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~ 85 (341)
+||+.+.|+--.+ .++. ...|..+..+.++||||..|-.+.++.-- . .++.+.|.+.++-+.
T Consensus 1 mriLfiGDvvGk~----------Gr~~v~~~Lp~lk~kyk~dfvI~N~ENaa~G~Gi---t----~k~y~~l~~~G~dvi 63 (266)
T COG1692 1 MRILFIGDVVGKP----------GRKAVKEHLPQLKSKYKIDFVIVNGENAAGGFGI---T----EKIYKELLEAGADVI 63 (266)
T ss_pred CeEEEEecccCcc----------hHHHHHHHhHHHHHhhcCcEEEEcCccccCCcCC---C----HHHHHHHHHhCCCEE
Confidence 5889999986543 2233 33455555567999999999998755321 1 244445556788765
Q ss_pred EEcCCCCCC
Q 039188 86 SVFGNHDDA 94 (341)
Q Consensus 86 ~i~GNHD~~ 94 (341)
+.|||=..
T Consensus 64 -T~GNH~wd 71 (266)
T COG1692 64 -TLGNHTWD 71 (266)
T ss_pred -eccccccc
Confidence 99999765
No 125
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=88.15 E-value=9.8 Score=34.32 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=26.8
Q ss_pred hHHHHHHcCCCceEEEeccccCCCcccccCCeEEEeec
Q 039188 259 GIMDILVNRSSVKAVFAGHNHGLDWCCPYQRLWLCYAR 296 (341)
Q Consensus 259 ~~~~~l~~~~~V~~v~~GH~H~n~~~~~~~gi~l~~g~ 296 (341)
++...+.+ .+|.+|+.||.|.-.-+..++|..+.|+=
T Consensus 196 ~~A~~l~~-~G~DvIiG~H~H~~~~~e~~~~~~I~Ysl 232 (239)
T smart00854 196 ELAHALID-AGADVVIGHHPHVLQPIEIYKGKLIAYSL 232 (239)
T ss_pred HHHHHHHH-cCCCEEEcCCCCcCCceEEECCEEEEEcc
Confidence 45555555 58999999999986555566787777653
No 126
>COG5555 Cytolysin, a secreted calcineurin-like phosphatase [Cell motility and secretion]
Probab=86.26 E-value=1.9 Score=39.96 Aligned_cols=90 Identities=17% Similarity=0.212 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhhhhCCCCCCCcEEEEecCchhhh-hhcCC-C-CCCCCccCccCCcccchhhccchHHHHHHcCCCceEE
Q 039188 197 SEQAEWFLHKAQEINPDSRVPEIVFWHIPSKAYE-KVAPK-S-AIERPCVGSINKESVAAQEAEMGIMDILVNRSSVKAV 273 (341)
Q Consensus 197 ~~Ql~WL~~~L~~~~~~~~~~~ivf~H~Pl~~~~-~~~~~-~-~~~~~~~g~~n~e~~~~~~~~~~~~~~l~~~~~V~~v 273 (341)
..-+-||+.-|....+. .+|+++|.|+--..+. ..|+. . .++.. |+ -....-...+...++..+.. +||..+
T Consensus 252 ~sslpwlk~dl~~~aad-grpv~LfqhyGwdtfsteawdpAsrT~Dd~--Gs-gaphww~a~er~all~~lqG-YNvvg~ 326 (392)
T COG5555 252 NSSLPWLKVDLIYSAAD-GRPVYLFQHYGWDTFSTEAWDPASRTLDDT--GS-GAPHWWPAPERGALLFFLQG-YNVVGT 326 (392)
T ss_pred cccCcceeccceeeccC-CCceeehhhhCccceeccccCchhcccccC--CC-CCCCCCCCCCcchHHHhhcC-ceeEEe
Confidence 34467999988876543 4799999999663322 12210 0 01110 11 00011111123456766665 699999
Q ss_pred EeccccCCCcccccCCeE
Q 039188 274 FAGHNHGLDWCCPYQRLW 291 (341)
Q Consensus 274 ~~GH~H~n~~~~~~~gi~ 291 (341)
|.||-|.-.......++.
T Consensus 327 fhGhkhd~~mayrr~~ld 344 (392)
T COG5555 327 FHGHKHDFNMAYRRYDLD 344 (392)
T ss_pred ccccccccceeeeecCcc
Confidence 999999754444444443
No 127
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=82.30 E-value=1.7 Score=38.29 Aligned_cols=36 Identities=19% Similarity=0.209 Sum_probs=24.4
Q ss_pred HHHHHHcCCCceEEEeccccCCCcccccCCeEEEeec
Q 039188 260 IMDILVNRSSVKAVFAGHNHGLDWCCPYQRLWLCYAR 296 (341)
Q Consensus 260 ~~~~l~~~~~V~~v~~GH~H~n~~~~~~~gi~l~~g~ 296 (341)
....+.+..++..++|||+|.... ...+++.++.++
T Consensus 180 ~~~~~~~~~~~~~~i~GH~H~~~~-~~~~~~~~~n~G 215 (217)
T cd07398 180 AVARLARRKGVDGVICGHTHRPAL-HELDGKLYINLG 215 (217)
T ss_pred HHHHHHHhcCCCEEEECCCCCCCe-EEECCEEEEECC
Confidence 344444557999999999999754 456676655544
No 128
>KOG3818 consensus DNA polymerase epsilon, subunit B [Replication, recombination and repair]
Probab=81.90 E-value=7.2 Score=38.40 Aligned_cols=82 Identities=10% Similarity=0.154 Sum_probs=53.6
Q ss_pred CCCCeEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhh---hCCCEEEEeCcccCCCcc--chhhHHHHHHHHHHHH
Q 039188 3 AGAPFKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDD---EAPGLVIYLGDVITANNI--AIANASLYWDQAISPT 77 (341)
Q Consensus 3 ~~~~~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~pD~vv~tGDl~~~~~~--~~~~~~~~~~~~~~~l 77 (341)
++..-+|+.+||+|+.. ..++..+.+++.. ..|-++|+.|-++....- ...+..+.+..+...|
T Consensus 279 ~~~d~~fVfLSdV~LD~-----------~~vm~aL~kifqgy~~~pP~~iIlcG~FtS~p~~~~s~~~~k~~f~~LA~~l 347 (525)
T KOG3818|consen 279 ENTDTSFVFLSDVFLDD-----------KKVMEALRKIFQGYKDAPPTAIILCGSFTSSPRQTSSSDQLKDGFRWLAAQL 347 (525)
T ss_pred hCcCceEEEEehhcccc-----------HHHHHHHHHHHhhccCCCCeEEEEeccccccccccchHHHHHHHHHHHHhhc
Confidence 34456789999999953 4577777777764 367899999999874321 1122233344444443
Q ss_pred Hh-----CCCCEEEEcCCCCCCC
Q 039188 78 RA-----RGIPWASVFGNHDDAA 95 (341)
Q Consensus 78 ~~-----~~iP~~~i~GNHD~~~ 95 (341)
.. .+..+++|||=-|...
T Consensus 348 ~~~~~~~ekT~fIFVPGP~Dp~~ 370 (525)
T KOG3818|consen 348 TCFRKDYEKTQFIFVPGPNDPWV 370 (525)
T ss_pred cccccccccceEEEecCCCCCCc
Confidence 11 1457899999999875
No 129
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=81.07 E-value=3.2 Score=37.29 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=17.7
Q ss_pred HHHHHHcCCCceEEEeccccCCCcc
Q 039188 260 IMDILVNRSSVKAVFAGHNHGLDWC 284 (341)
Q Consensus 260 ~~~~l~~~~~V~~v~~GH~H~n~~~ 284 (341)
.++.+.+..++.+++|||+|++...
T Consensus 176 ~~~~~~~~~~~~~~i~GHtH~~~~~ 200 (231)
T TIGR01854 176 EVAAVMRRYGVDRLIHGHTHRPAIH 200 (231)
T ss_pred HHHHHHHHcCCCEEEECCccCccee
Confidence 3444334458999999999997643
No 130
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=78.52 E-value=4.6 Score=35.88 Aligned_cols=53 Identities=23% Similarity=0.418 Sum_probs=33.0
Q ss_pred hhhCCCEEEEeCcccCCCcc--------------------chhhHHHHHHHH-----HHHHHhCCCCEEEEcCCCCCCC
Q 039188 42 DDEAPGLVIYLGDVITANNI--------------------AIANASLYWDQA-----ISPTRARGIPWASVFGNHDDAA 95 (341)
Q Consensus 42 ~~~~pD~vv~tGDl~~~~~~--------------------~~~~~~~~~~~~-----~~~l~~~~iP~~~i~GNHD~~~ 95 (341)
.+.+||++|.+||.+..... ..+.....+... ++.+. ..+|++.+.-+||...
T Consensus 26 ~~~~~d~~l~~GD~IY~d~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Y~~~~~~p~~~~~~-~~~p~~~iwDDHDi~~ 103 (228)
T cd07389 26 SEEDPDLFLHLGDQIYADDVGGLMPALIEGRPLEPAHEALTLEEYRERYRQYRSDPDLQRLL-AQVPTIGIWDDHDIGD 103 (228)
T ss_pred cccCCCEEEEcCCeecccCCCcccccccCCcCcCCcccccCHHHHHHHHHHHcCCHHHHHHh-hcCCEEEecccccccc
Confidence 36799999999999985531 011111111111 12221 3689999999999985
No 131
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=78.03 E-value=5.2 Score=36.16 Aligned_cols=54 Identities=15% Similarity=0.206 Sum_probs=30.6
Q ss_pred chHHHHHHcCCCceEEEeccccCCCcccc-cCCeEEEeecCccCCCCCCCCCceEEEEEecC
Q 039188 258 MGIMDILVNRSSVKAVFAGHNHGLDWCCP-YQRLWLCYARHSGYGGYGDWARGARILEITEK 318 (341)
Q Consensus 258 ~~~~~~l~~~~~V~~v~~GH~H~n~~~~~-~~gi~l~~g~~tg~~~~~~~~~g~Rii~l~~~ 318 (341)
..+.+.+.+ .++..++|||+|+...... ..++.+ .|-..++|......++++.+
T Consensus 177 ~~~~~~~~~-~~~~~~i~GH~H~~~~~~~~~~~~~~------~~~~lgdw~~~~~~~~~~~~ 231 (241)
T PRK05340 177 EAVAALMEK-HGVDTLIHGHTHRPAIHQLQAGGQPA------TRIVLGDWHEQGSVLKVDAD 231 (241)
T ss_pred HHHHHHHHH-hCCCEEEECcccCcceeeccCCCcce------EEEEeCCCCCCCeEEEEECC
Confidence 345666655 4899999999998643211 122110 12223455555566777654
No 132
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=77.36 E-value=3.3 Score=37.06 Aligned_cols=47 Identities=15% Similarity=0.211 Sum_probs=32.3
Q ss_pred CCC-EEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 039188 45 APG-LVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVFGNHDDAA 95 (341)
Q Consensus 45 ~pD-~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~GNHD~~~ 95 (341)
-|| --|+.||.++.+-. +.+.+..++-...+..-.+..+.|||+.+.
T Consensus 71 vP~tnYiFmGDfVDRGyy----SLEtfT~l~~LkaryP~~ITLlRGNHEsRq 118 (306)
T KOG0373|consen 71 VPDTNYIFMGDFVDRGYY----SLETFTLLLLLKARYPAKITLLRGNHESRQ 118 (306)
T ss_pred CCCcceEEeccccccccc----cHHHHHHHHHHhhcCCceeEEeeccchhhh
Confidence 355 46889999997653 234444555444455667889999999985
No 133
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=73.64 E-value=59 Score=29.42 Aligned_cols=78 Identities=17% Similarity=0.163 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhhhhCCCCCCCcEEEEecCchhhhhhcCCCCCCCCccCccCCcccchhhccchHHHHHHcCCCceEEEec
Q 039188 197 SEQAEWFLHKAQEINPDSRVPEIVFWHIPSKAYEKVAPKSAIERPCVGSINKESVAAQEAEMGIMDILVNRSSVKAVFAG 276 (341)
Q Consensus 197 ~~Ql~WL~~~L~~~~~~~~~~~ivf~H~Pl~~~~~~~~~~~~~~~~~g~~n~e~~~~~~~~~~~~~~l~~~~~V~~v~~G 276 (341)
..+++.+.+.++++++ ....+||++|--.. +... . ..+ -.++...+.+ .++.+|+.+
T Consensus 167 ~~~~~~i~~~i~~~r~-~~D~vIv~~HwG~e-~~~~-----------p--~~~-------q~~~a~~lid-aGaDiIiG~ 223 (250)
T PF09587_consen 167 RPGIERIKEDIREARK-KADVVIVSLHWGIE-YENY-----------P--TPE-------QRELARALID-AGADIIIGH 223 (250)
T ss_pred cchHHHHHHHHHHHhc-CCCEEEEEeccCCC-CCCC-----------C--CHH-------HHHHHHHHHH-cCCCEEEeC
Confidence 3456888888888874 23468888887431 1110 0 000 1356666766 479999999
Q ss_pred cccCCCcccccCCeEEEeecC
Q 039188 277 HNHGLDWCCPYQRLWLCYARH 297 (341)
Q Consensus 277 H~H~n~~~~~~~gi~l~~g~~ 297 (341)
|-|.-.-...++|-.+.|+-+
T Consensus 224 HpHv~q~~E~y~~~~I~YSLG 244 (250)
T PF09587_consen 224 HPHVIQPVEIYKGKPIFYSLG 244 (250)
T ss_pred CCCcccceEEECCEEEEEeCc
Confidence 999865555677777777543
No 134
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.60 E-value=20 Score=30.20 Aligned_cols=76 Identities=16% Similarity=0.343 Sum_probs=45.8
Q ss_pred hHHHHHHcCCCceEEEeccccCCCcccccCCeEEEeecCccCCCCC----C-CCCceEEEEEecCCCceeEEE-EccCCc
Q 039188 259 GIMDILVNRSSVKAVFAGHNHGLDWCCPYQRLWLCYARHSGYGGYG----D-WARGARILEITEKPFSLKSWI-RMEDGA 332 (341)
Q Consensus 259 ~~~~~l~~~~~V~~v~~GH~H~n~~~~~~~gi~l~~g~~tg~~~~~----~-~~~g~Rii~l~~~~~~~~t~~-r~~~g~ 332 (341)
+-+++|.+.-+|...+.||+|.-. ....+|- +...|+++-|+|. + ..|..-+..+. +....|++ |+=+|+
T Consensus 97 ~sL~~LaRqldvDILl~G~Th~f~-Aye~eg~-ffvnPGSaTGAfn~~~t~~~~PSFvLmDiq--g~~~v~YvY~lidge 172 (183)
T KOG3325|consen 97 ESLALLARQLDVDILLTGHTHKFE-AYEHEGK-FFVNPGSATGAFNVSDTDIIVPSFVLMDIQ--GSTVVTYVYRLIDGE 172 (183)
T ss_pred HHHHHHHHhcCCcEEEeCCceeEE-EEEeCCc-EEeCCCcccCCCcccccCCCCCceEEEEec--CCEEEEEEeeeeCCc
Confidence 456677766799999999999744 3344553 3333444433443 2 34555555443 56778884 677776
Q ss_pred -Eeeeee
Q 039188 333 -VHSQVT 338 (341)
Q Consensus 333 -~~~~~~ 338 (341)
.|.++.
T Consensus 173 VkVdki~ 179 (183)
T KOG3325|consen 173 VKVDKIE 179 (183)
T ss_pred EEEEEEE
Confidence 455543
No 135
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=71.04 E-value=9.3 Score=36.69 Aligned_cols=45 Identities=27% Similarity=0.306 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEcC
Q 039188 33 SSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVFG 89 (341)
Q Consensus 33 ~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~G 89 (341)
.+..+.+++.+++||+||+.||-. . .+.-.+.. ..++||++.+-|
T Consensus 55 ~~~~~~~~~~~~~Pd~Vlv~GD~~----------~-~la~alaA-~~~~ipv~Hiea 99 (346)
T PF02350_consen 55 AIIELADVLEREKPDAVLVLGDRN----------E-ALAAALAA-FYLNIPVAHIEA 99 (346)
T ss_dssp HHHHHHHHHHHHT-SEEEEETTSH----------H-HHHHHHHH-HHTT-EEEEES-
T ss_pred HHHHHHHHHHhcCCCEEEEEcCCc----------h-HHHHHHHH-HHhCCCEEEecC
Confidence 455667777889999999999942 1 11222211 236899998744
No 136
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=69.37 E-value=5.6 Score=38.03 Aligned_cols=72 Identities=15% Similarity=0.112 Sum_probs=41.8
Q ss_pred EEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCC-EEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEE
Q 039188 8 KIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPG-LVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWAS 86 (341)
Q Consensus 8 ~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD-~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~ 86 (341)
-|.++.|+|.-. .+.++.+... ....|+ -.|++||.+|.+... -+.+--++..=...+-.|+.
T Consensus 60 PV~i~GDiHGq~-----------~DLlrlf~~~-g~~pp~~~ylFLGDYVDRG~~s----lE~i~LL~a~Ki~yp~~~~l 123 (331)
T KOG0374|consen 60 PVKIVGDIHGQF-----------GDLLRLFDLL-GSFPPDQNYVFLGDYVDRGKQS----LETICLLFALKIKYPENVFL 123 (331)
T ss_pred CEEEEccCcCCH-----------HHHHHHHHhc-CCCCCcccEEEecccccCCccc----eEEeehhhhhhhhCCceEEE
Confidence 367788998642 2333433322 112364 689999999987632 11111111111224566999
Q ss_pred EcCCCCCCC
Q 039188 87 VFGNHDDAA 95 (341)
Q Consensus 87 i~GNHD~~~ 95 (341)
+.|||....
T Consensus 124 LRGNHE~~~ 132 (331)
T KOG0374|consen 124 LRGNHECAS 132 (331)
T ss_pred ecccccccc
Confidence 999999985
No 137
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=63.93 E-value=9.7 Score=34.72 Aligned_cols=45 Identities=13% Similarity=0.123 Sum_probs=27.6
Q ss_pred CEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 039188 47 GLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVFGNHDDAA 95 (341)
Q Consensus 47 D~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~GNHD~~~ 95 (341)
.--++.||.+|.+-. +.+.+--++..-....-.+..+.|||+.+.
T Consensus 71 t~YLFLGDyVDRG~~----SvEt~lLLl~lK~rYP~ritLiRGNHEsRq 115 (303)
T KOG0372|consen 71 TNYLFLGDYVDRGYY----SVETFLLLLALKVRYPDRITLIRGNHESRQ 115 (303)
T ss_pred CceEeecchhccccc----hHHHHHHHHHHhhcCcceeEEeeccchhhh
Confidence 457889999997653 222222222111123455899999999985
No 138
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=62.02 E-value=1.2e+02 Score=27.02 Aligned_cols=51 Identities=14% Similarity=0.197 Sum_probs=34.3
Q ss_pred HHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHh-CCCCEEEEcCCCCCCC
Q 039188 37 MSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRA-RGIPWASVFGNHDDAA 95 (341)
Q Consensus 37 l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~-~~iP~~~i~GNHD~~~ 95 (341)
+.+.+.+...|++++.|=. +-+ .+.+.++++.+++ .++|+++-|||++.-.
T Consensus 16 ia~~v~~~gtDaI~VGGS~--gvt------~~~~~~~v~~ik~~~~lPvilfp~~~~~i~ 67 (205)
T TIGR01769 16 IAKNAKDAGTDAIMVGGSL--GIV------ESNLDQTVKKIKKITNLPVILFPGNVNGLS 67 (205)
T ss_pred HHHHHHhcCCCEEEEcCcC--CCC------HHHHHHHHHHHHhhcCCCEEEECCCccccC
Confidence 3334445678999998873 111 1223566666776 5899999999999864
No 139
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=61.82 E-value=1.1e+02 Score=27.87 Aligned_cols=51 Identities=8% Similarity=0.134 Sum_probs=35.4
Q ss_pred HHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHH-hCCCCEEEEcCCCCCCC
Q 039188 37 MSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTR-ARGIPWASVFGNHDDAA 95 (341)
Q Consensus 37 l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~-~~~iP~~~i~GNHD~~~ 95 (341)
+.+.+.+..-|+|++.|=. +-+ .+..+++++.+. +.++|++.-||||..-.
T Consensus 33 i~~~~~~~GTDaImIGGS~--gvt------~~~~~~~v~~ik~~~~lPvilfP~~~~~is 84 (240)
T COG1646 33 IAEAAAEAGTDAIMIGGSD--GVT------EENVDNVVEAIKERTDLPVILFPGSPSGIS 84 (240)
T ss_pred HHHHHHHcCCCEEEECCcc--ccc------HHHHHHHHHHHHhhcCCCEEEecCChhccC
Confidence 3334445689999999964 111 223456777777 78999999999998863
No 140
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=61.64 E-value=61 Score=29.19 Aligned_cols=46 Identities=17% Similarity=0.220 Sum_probs=34.0
Q ss_pred HhhhCCCEEEEeCcc-cCCCccchhhHHHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 039188 41 LDDEAPGLVIYLGDV-ITANNIAIANASLYWDQAISPTRARGIPWASVFGNHDDAA 95 (341)
Q Consensus 41 l~~~~pD~vv~tGDl-~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~GNHD~~~ 95 (341)
+.+...|++++.|=. +... .+.++++.+++..+|++.-|||++.-.
T Consensus 23 ~~~~gtdai~vGGS~~vt~~---------~~~~~v~~ik~~~lPvilfp~~~~~i~ 69 (223)
T TIGR01768 23 AAESGTDAILIGGSQGVTYE---------KTDTLIEALRRYGLPIILFPSNPTNVS 69 (223)
T ss_pred HHhcCCCEEEEcCCCcccHH---------HHHHHHHHHhccCCCEEEeCCCccccC
Confidence 344578999999965 3222 235677777778899999999999863
No 141
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=59.09 E-value=24 Score=34.36 Aligned_cols=48 Identities=31% Similarity=0.320 Sum_probs=31.3
Q ss_pred hHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEE-cCCC
Q 039188 32 NSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASV-FGNH 91 (341)
Q Consensus 32 ~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i-~GNH 91 (341)
..+..+.+++.+++||+|++-||-..... ..+... ..+||+..+ .|+-
T Consensus 79 ~~i~~~~~vl~~~kPD~VlVhGDT~t~lA----------~alaa~--~~~IpV~HvEAGlR 127 (383)
T COG0381 79 NIIEGLSKVLEEEKPDLVLVHGDTNTTLA----------GALAAF--YLKIPVGHVEAGLR 127 (383)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCcchHHH----------HHHHHH--HhCCceEEEecccc
Confidence 35667778888999999999999532211 112211 247999875 6664
No 142
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=56.11 E-value=82 Score=28.29 Aligned_cols=53 Identities=9% Similarity=0.120 Sum_probs=32.9
Q ss_pred HHHHHHHhhhCCCEEEEeCcc-cCCCccchhhHHHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 039188 35 RVMSTVLDDEAPGLVIYLGDV-ITANNIAIANASLYWDQAISPTRARGIPWASVFGNHDDAA 95 (341)
Q Consensus 35 ~~l~~~l~~~~pD~vv~tGDl-~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~GNHD~~~ 95 (341)
..+.+++.+...|++++.|=. ++ .. .+..-++++...+ .+|++.-|||++.-.
T Consensus 15 ~~~~~~~~~~gtdai~vGGS~~v~-~~------~~~~~~~ik~~~~-~~Pvilfp~~~~~i~ 68 (219)
T cd02812 15 EEIAKLAEESGTDAIMVGGSDGVS-ST------LDNVVRLIKRIRR-PVPVILFPSNPEAVS 68 (219)
T ss_pred HHHHHHHHhcCCCEEEECCccchh-hh------HHHHHHHHHHhcC-CCCEEEeCCCccccC
Confidence 345555555678999999966 33 22 1111233333332 599999999999863
No 143
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=56.06 E-value=33 Score=31.92 Aligned_cols=66 Identities=15% Similarity=-0.023 Sum_probs=41.5
Q ss_pred CCeEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCC-
Q 039188 5 APFKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIP- 83 (341)
Q Consensus 5 ~~~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP- 83 (341)
+..|++-+||.|--... ++ +-..=|+.+.+||.+.-+.. +.+..+-+.+..+.-.
T Consensus 60 ~~~r~VcisdtH~~~~~---------------i~---~~p~gDvlihagdfT~~g~~------~ev~~fn~~~gslph~y 115 (305)
T KOG3947|consen 60 GYARFVCISDTHELTFD---------------IN---DIPDGDVLIHAGDFTNLGLP------EEVIKFNEWLGSLPHEY 115 (305)
T ss_pred CceEEEEecCcccccCc---------------cc---cCCCCceEEeccCCccccCH------HHHHhhhHHhccCccee
Confidence 45789999999964321 11 22345899999999985542 1223444455544332
Q ss_pred EEEEcCCCCCC
Q 039188 84 WASVFGNHDDA 94 (341)
Q Consensus 84 ~~~i~GNHD~~ 94 (341)
-++|.|||.+.
T Consensus 116 KIVIaGNHELt 126 (305)
T KOG3947|consen 116 KIVIAGNHELT 126 (305)
T ss_pred eEEEeecccee
Confidence 24699999986
No 144
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=55.18 E-value=69 Score=29.01 Aligned_cols=47 Identities=15% Similarity=0.203 Sum_probs=34.6
Q ss_pred HHhhhCCCEEEEeCcc-cCCCccchhhHHHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 039188 40 VLDDEAPGLVIYLGDV-ITANNIAIANASLYWDQAISPTRARGIPWASVFGNHDDAA 95 (341)
Q Consensus 40 ~l~~~~pD~vv~tGDl-~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~GNHD~~~ 95 (341)
.+.+...|+|++.|=. +.. +...++++.+.+..+|++.-|||++.-.
T Consensus 27 ~~~~~gtdai~vGGS~~vt~---------~~~~~~v~~ik~~~lPvilfp~~~~~i~ 74 (232)
T PRK04169 27 AICESGTDAIIVGGSDGVTE---------ENVDELVKAIKEYDLPVILFPGNIEGIS 74 (232)
T ss_pred HHHhcCCCEEEEcCCCccch---------HHHHHHHHHHhcCCCCEEEeCCCccccC
Confidence 3445678999999965 332 2235677777778899999999999864
No 145
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.94 E-value=28 Score=34.58 Aligned_cols=70 Identities=16% Similarity=0.098 Sum_probs=43.4
Q ss_pred eEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhC-CCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEE
Q 039188 7 FKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEA-PGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWA 85 (341)
Q Consensus 7 ~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~ 85 (341)
.||+++.|.--. ....++.++++-++.. .|++++.|+++...+. ...+.++..-..+..||+|
T Consensus 6 ~kILv~Gd~~Gr-----------~~eli~rI~~v~Kk~GpFd~liCvGnfF~~~~~-----~~e~~~ykng~~~vPiptY 69 (528)
T KOG2476|consen 6 AKILVCGDVEGR-----------FDELIKRIQKVNKKSGPFDLLICVGNFFGHDTQ-----NAEVEKYKNGTKKVPIPTY 69 (528)
T ss_pred ceEEEEcCcccc-----------HHHHHHHHHHHhhcCCCceEEEEecccCCCccc-----hhHHHHHhcCCccCceeEE
Confidence 467766665321 1234556666555565 5999999999985331 2223455555566788999
Q ss_pred EEcCCCC
Q 039188 86 SVFGNHD 92 (341)
Q Consensus 86 ~i~GNHD 92 (341)
+.-+|--
T Consensus 70 ~~g~~~~ 76 (528)
T KOG2476|consen 70 FLGDNAN 76 (528)
T ss_pred EecCCCC
Confidence 8877754
No 146
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=53.65 E-value=52 Score=27.64 Aligned_cols=56 Identities=11% Similarity=0.175 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCC-----CCEEEEcCCCCCC
Q 039188 31 VNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARG-----IPWASVFGNHDDA 94 (341)
Q Consensus 31 ~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~-----iP~~~i~GNHD~~ 94 (341)
.+..+.|.+.+...+||+|++.|.-. . +....+.+.+.+.+.. -|+-++..|=+..
T Consensus 49 ~~~~~~l~~~i~~~kP~vI~v~g~~~---~-----s~~l~~~v~~~v~~~~~~~~~~~i~V~~v~~~~A 109 (150)
T PF14639_consen 49 EEDMERLKKFIEKHKPDVIAVGGNSR---E-----SRKLYDDVRDIVEELDEDEQMPPIPVVIVDDEVA 109 (150)
T ss_dssp HHHHHHHHHHHHHH--SEEEE--SST---H-----HHHHHHHHHHHHHHTTB-TTS-B--EEE---TTH
T ss_pred HHHHHHHHHHHHHcCCeEEEEcCCCh---h-----HHHHHHHHHHHHHHhhhcccCCCceEEEECcHHH
Confidence 34566778888899999999988421 1 2333344444444432 3444566665554
No 147
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=52.35 E-value=41 Score=32.44 Aligned_cols=47 Identities=28% Similarity=0.280 Sum_probs=29.8
Q ss_pred HHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEE-EcCCCC
Q 039188 34 SRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWAS-VFGNHD 92 (341)
Q Consensus 34 ~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~-i~GNHD 92 (341)
+..+.+++.+++||+|+..||-...- ...+.. ..++||++. -.|++-
T Consensus 82 ~~~~~~~~~~~~Pd~vlv~GD~~~~l-----------a~alaA-~~~~IPv~HveaG~rs 129 (365)
T TIGR03568 82 IIGFSDAFERLKPDLVVVLGDRFEML-----------AAAIAA-ALLNIPIAHIHGGEVT 129 (365)
T ss_pred HHHHHHHHHHhCCCEEEEeCCchHHH-----------HHHHHH-HHhCCcEEEEECCccC
Confidence 45666777888999999999953211 111111 135899994 566663
No 148
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=51.22 E-value=29 Score=31.93 Aligned_cols=44 Identities=20% Similarity=0.267 Sum_probs=29.1
Q ss_pred hCCC-EEEEeCcccCCCccchhhHHHHHHHHHHHHHhCC----CCEEEEcCCCCCCC
Q 039188 44 EAPG-LVIYLGDVITANNIAIANASLYWDQAISPTRARG----IPWASVFGNHDDAA 95 (341)
Q Consensus 44 ~~pD-~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~----iP~~~i~GNHD~~~ 95 (341)
..|| -.++.||.++.+..+ . +.+..+...+ -.+..++|||+...
T Consensus 84 ~~pdtnylfmGDyvdrGy~S----v----etVS~lva~Kvry~~rvtilrGNHEsrq 132 (319)
T KOG0371|consen 84 LAPDTNYLFMGDYVDRGYYS----V----ETVSLLVALKVRYPDRVTILRGNHESRQ 132 (319)
T ss_pred CCCCcceeeeeeecccccch----H----HHHHHHHHhhccccceeEEecCchHHHH
Confidence 4676 478899999977532 1 2233333333 45889999999985
No 149
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=49.83 E-value=63 Score=24.37 Aligned_cols=46 Identities=17% Similarity=0.194 Sum_probs=32.2
Q ss_pred HHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEcCCCC
Q 039188 37 MSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVFGNHD 92 (341)
Q Consensus 37 l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~GNHD 92 (341)
..+.++.....+|++.+|.- ......+.....+.++|+.+++==.|
T Consensus 21 t~Kai~kg~~~~v~iA~Da~----------~~vv~~l~~lceek~Ip~v~V~s~~~ 66 (84)
T PRK13600 21 TLKALKKDQVTSLIIAEDVE----------VYLMTRVLSQINQKNIPVSFFKSKHA 66 (84)
T ss_pred HHHHHhcCCceEEEEeCCCC----------HHHHHHHHHHHHHcCCCEEEECCHHH
Confidence 34445566789999999962 12345777777889999998864333
No 150
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=47.72 E-value=61 Score=25.48 Aligned_cols=53 Identities=13% Similarity=0.010 Sum_probs=33.9
Q ss_pred HHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCC--CCEEEEcCCCCCC
Q 039188 34 SRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARG--IPWASVFGNHDDA 94 (341)
Q Consensus 34 ~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~--iP~~~i~GNHD~~ 94 (341)
.+.+.+.+.+.+||+|.++.=+.... ....++++.+.+.. -+.+++-|+|-..
T Consensus 39 ~~~l~~~~~~~~pdvV~iS~~~~~~~--------~~~~~~i~~l~~~~~~~~~i~vGG~~~~~ 93 (119)
T cd02067 39 PEEIVEAAKEEDADAIGLSGLLTTHM--------TLMKEVIEELKEAGLDDIPVLVGGAIVTR 93 (119)
T ss_pred HHHHHHHHHHcCCCEEEEeccccccH--------HHHHHHHHHHHHcCCCCCeEEEECCCCCh
Confidence 44566667788999999987644332 22345555555553 2456789998654
No 151
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=47.29 E-value=61 Score=29.80 Aligned_cols=68 Identities=16% Similarity=0.195 Sum_probs=40.1
Q ss_pred EEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEc
Q 039188 9 IVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVF 88 (341)
Q Consensus 9 i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~ 88 (341)
+.+++|+|..... +.......+.....+....+|.|++||.-+-.... .+.++++.+. .++|+++=-
T Consensus 141 v~ilaDV~~kh~~-----~l~~~~~~~~~~~a~~~~~aDaviVtG~~TG~~~~-----~~~l~~vr~~---~~~PVlvGS 207 (254)
T PF03437_consen 141 VKILADVHVKHSS-----PLATRDLEEAAKDAVERGGADAVIVTGKATGEPPD-----PEKLKRVREA---VPVPVLVGS 207 (254)
T ss_pred eEEEeeechhhcc-----cCCCCCHHHHHHHHHHhcCCCEEEECCcccCCCCC-----HHHHHHHHhc---CCCCEEEec
Confidence 7888999986543 11122233344444556789999999998755442 2333444443 348877533
Q ss_pred C
Q 039188 89 G 89 (341)
Q Consensus 89 G 89 (341)
|
T Consensus 208 G 208 (254)
T PF03437_consen 208 G 208 (254)
T ss_pred C
Confidence 3
No 152
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=45.77 E-value=23 Score=30.32 Aligned_cols=14 Identities=21% Similarity=0.456 Sum_probs=11.9
Q ss_pred CCceEEEeccccCC
Q 039188 268 SSVKAVFAGHNHGL 281 (341)
Q Consensus 268 ~~V~~v~~GH~H~n 281 (341)
.++.++||||+|..
T Consensus 133 ~~~~~~lsGH~H~~ 146 (171)
T cd07384 133 IKPVLILSGHDHDQ 146 (171)
T ss_pred cCceEEEeCcccCC
Confidence 46789999999975
No 153
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=44.12 E-value=30 Score=30.57 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=15.3
Q ss_pred HHcCCCceEEEeccccCCCc
Q 039188 264 LVNRSSVKAVFAGHNHGLDW 283 (341)
Q Consensus 264 l~~~~~V~~v~~GH~H~n~~ 283 (341)
+.+..+.+.+++||+|....
T Consensus 162 ~l~~~~~~~iv~GHTh~~~~ 181 (208)
T cd07425 162 VLERLGAKRMVVGHTPQEGG 181 (208)
T ss_pred HHHHcCCCeEEEcCeeeecC
Confidence 33446789999999998654
No 154
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=43.44 E-value=88 Score=25.97 Aligned_cols=52 Identities=13% Similarity=0.204 Sum_probs=32.1
Q ss_pred HHHHHHHHhhhCCCEEEEeC---cccCCCccchhhHHHHHHHHHHHHHhC--CCCEEEE
Q 039188 34 SRVMSTVLDDEAPGLVIYLG---DVITANNIAIANASLYWDQAISPTRAR--GIPWASV 87 (341)
Q Consensus 34 ~~~l~~~l~~~~pD~vv~tG---Dl~~~~~~~~~~~~~~~~~~~~~l~~~--~iP~~~i 87 (341)
+..+.+.+...+||.|++.. |+..+.+ .++..+.+.++++.+.+. +.+++++
T Consensus 39 ~~~~~~~~~~~~p~~vvi~~G~ND~~~~~~--~~~~~~~~~~lv~~i~~~~~~~~iil~ 95 (171)
T cd04502 39 LHYFDRLVLPYQPRRVVLYAGDNDLASGRT--PEEVLRDFRELVNRIRAKLPDTPIAII 95 (171)
T ss_pred HHHHHhhhccCCCCEEEEEEecCcccCCCC--HHHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 33444444456999988855 8765443 233455677888877664 4666654
No 155
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=42.91 E-value=28 Score=35.99 Aligned_cols=52 Identities=17% Similarity=0.177 Sum_probs=34.6
Q ss_pred HHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 039188 34 SRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVFGNHDDA 94 (341)
Q Consensus 34 ~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~GNHD~~ 94 (341)
+..+..+|...-.|-+-+.||+.|.+..+ +.+++.|.+. --+-+--||||.-
T Consensus 173 I~al~~lIqrL~VDhLHIvGDIyDRGp~p--------d~ImD~Lm~~-hsvDIQWGNHDIl 224 (640)
T PF06874_consen 173 IIALSELIQRLAVDHLHIVGDIYDRGPRP--------DKIMDRLMNY-HSVDIQWGNHDIL 224 (640)
T ss_pred HHHHHHHHHHHhhhheeecccccCCCCCh--------hHHHHHHhcC-CCccccccchHHH
Confidence 34445556667899999999999988742 2555554432 1234567999996
No 156
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=40.93 E-value=34 Score=30.45 Aligned_cols=32 Identities=9% Similarity=-0.011 Sum_probs=19.1
Q ss_pred CCceEEEeccccCCCcccccCCeEEEeecCccCC
Q 039188 268 SSVKAVFAGHNHGLDWCCPYQRLWLCYARHSGYG 301 (341)
Q Consensus 268 ~~V~~v~~GH~H~n~~~~~~~gi~l~~g~~tg~~ 301 (341)
.++..|+|||+|.... ...++. ++.-+++.|+
T Consensus 178 ~~~~~vv~GHTh~~~~-~~~~~~-i~IDtGs~~g 209 (218)
T PRK09968 178 NGADYFIFGHMMFDNI-QTFANQ-IYIDTGSPKS 209 (218)
T ss_pred CCCCEEEECCCCcCcc-eeECCE-EEEECCCCCC
Confidence 4667899999998643 334443 3333434443
No 157
>PF07997 DUF1694: Protein of unknown function (DUF1694); InterPro: IPR012543 This family contains many hypothetical proteins.; PDB: 2OHW_A.
Probab=40.67 E-value=93 Score=25.11 Aligned_cols=49 Identities=16% Similarity=0.169 Sum_probs=30.3
Q ss_pred hHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEcCC
Q 039188 32 NSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVFGN 90 (341)
Q Consensus 32 ~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~GN 90 (341)
.....+.+++...++-.+++.|+|-.. .....++...+.++|+.++-..
T Consensus 49 ~~~~~~~~~l~~~~~~~l~ing~l~~~----------~~~~YiklA~~~~~~fTiv~~~ 97 (120)
T PF07997_consen 49 DIYPEFEQALKDYPNYKLKINGNLDYS----------FQSKYIKLANKHGIPFTIVNDP 97 (120)
T ss_dssp S--HHHHHHHHC-SSEEEEEETTS-HH----------HHHHHHHHHHHTT--EEEE---
T ss_pred hHHHHHHHHHhhCCCeEEEEcCCCCHH----------HHHHHHHHHHHcCCCEEEeCCC
Confidence 456678888888888899999998322 3345566667789999987443
No 158
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=39.72 E-value=1e+02 Score=23.03 Aligned_cols=51 Identities=18% Similarity=0.179 Sum_probs=33.0
Q ss_pred HHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 039188 36 VMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVFGNHDDA 94 (341)
Q Consensus 36 ~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~GNHD~~ 94 (341)
.+.+.+....||+|++-.++-+... .+.++++.+.. ..+|++++-.++|..
T Consensus 34 ~~~~~~~~~~~d~iiid~~~~~~~~------~~~~~~i~~~~--~~~~ii~~t~~~~~~ 84 (112)
T PF00072_consen 34 EALELLKKHPPDLIIIDLELPDGDG------LELLEQIRQIN--PSIPIIVVTDEDDSD 84 (112)
T ss_dssp HHHHHHHHSTESEEEEESSSSSSBH------HHHHHHHHHHT--TTSEEEEEESSTSHH
T ss_pred HHHHHhcccCceEEEEEeeeccccc------ccccccccccc--ccccEEEecCCCCHH
Confidence 3344556778999999988877443 33444443332 568888777666644
No 159
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=38.12 E-value=1.3e+02 Score=24.06 Aligned_cols=50 Identities=12% Similarity=0.173 Sum_probs=33.3
Q ss_pred HHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 039188 36 VMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVFGNHDDA 94 (341)
Q Consensus 36 ~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~GNHD~~ 94 (341)
...+.++.-+..+||++.|.- ..+....+-....+.++|+.+++-=+++.
T Consensus 34 e~~Kai~~g~a~LVviA~Dv~---------P~~~~~~l~~lc~~~~vpyv~V~sk~~LG 83 (116)
T COG1358 34 EVTKAIERGKAKLVVIAEDVS---------PEELVKHLPALCEEKNVPYVYVGSKKELG 83 (116)
T ss_pred HHHHHHHcCCCcEEEEecCCC---------HHHHHHHHHHHHHhcCCCEEEeCCHHHHH
Confidence 344455566899999999962 12233455555567899999887655554
No 160
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.64 E-value=79 Score=26.72 Aligned_cols=66 Identities=15% Similarity=0.201 Sum_probs=41.7
Q ss_pred EEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEE
Q 039188 8 KIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASV 87 (341)
Q Consensus 8 ~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i 87 (341)
-++.++|+|+-... .+.-..+.+++---+..-|++||.++... ..+|++. ..--+.++
T Consensus 2 LvL~lgD~HiP~Ra---------~~Lp~KFkklLvPgki~hilctGNlcs~e------~~dylk~-------l~~dvhiV 59 (183)
T KOG3325|consen 2 LVLVLGDLHIPHRA---------NDLPAKFKKLLVPGKIQHILCTGNLCSKE------SYDYLKT-------LSSDVHIV 59 (183)
T ss_pred EEEEeccccCCccc---------cccCHHHHhccCCCceeEEEEeCCcchHH------HHHHHHh-------hCCCcEEE
Confidence 36889999995422 11223566666545778999999976432 2333332 33457789
Q ss_pred cCCCCCCC
Q 039188 88 FGNHDDAA 95 (341)
Q Consensus 88 ~GNHD~~~ 95 (341)
.|--|...
T Consensus 60 rGeFD~~~ 67 (183)
T KOG3325|consen 60 RGEFDENL 67 (183)
T ss_pred ecccCccc
Confidence 99988874
No 161
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=37.53 E-value=1.5e+02 Score=24.71 Aligned_cols=52 Identities=17% Similarity=0.164 Sum_probs=32.8
Q ss_pred HHHHHHHHhhhCCCEEEEeC---cccCCCccchhhHHHHHHHHHHHHHhCCCCEEEE
Q 039188 34 SRVMSTVLDDEAPGLVIYLG---DVITANNIAIANASLYWDQAISPTRARGIPWASV 87 (341)
Q Consensus 34 ~~~l~~~l~~~~pD~vv~tG---Dl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i 87 (341)
++.+++.+...+||.|++.. |...+.+ ..+..+.++++++.+.+.+.+++++
T Consensus 48 l~~l~~~~~~~~~d~v~i~~G~ND~~~~~~--~~~~~~~~~~li~~~~~~~~~~il~ 102 (183)
T cd04501 48 LVRFYEDVIALKPAVVIIMGGTNDIIVNTS--LEMIKDNIRSMVELAEANGIKVILA 102 (183)
T ss_pred HHHHHHHHHhcCCCEEEEEeccCccccCCC--HHHHHHHHHHHHHHHHHCCCcEEEE
Confidence 34455445557899877765 6654332 2345556788888888777776655
No 162
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=36.35 E-value=1.1e+02 Score=27.86 Aligned_cols=43 Identities=26% Similarity=0.361 Sum_probs=28.2
Q ss_pred HHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEE
Q 039188 36 VMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASV 87 (341)
Q Consensus 36 ~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i 87 (341)
.....+++.+|||||+++=.---... ....+.|.+.++|.++|
T Consensus 51 ~~~~~~~~~~pDf~i~isPN~a~PGP---------~~ARE~l~~~~iP~IvI 93 (277)
T PRK00994 51 VVKKMLEEWKPDFVIVISPNPAAPGP---------KKAREILKAAGIPCIVI 93 (277)
T ss_pred HHHHHHHhhCCCEEEEECCCCCCCCc---------hHHHHHHHhcCCCEEEE
Confidence 34445567899999999875442221 13445566789999876
No 163
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=35.86 E-value=1.4e+02 Score=23.03 Aligned_cols=47 Identities=15% Similarity=0.061 Sum_probs=29.8
Q ss_pred HHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 039188 37 MSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVFGNHDD 93 (341)
Q Consensus 37 l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~GNHD~ 93 (341)
..+.+...+.-+||++.|.- . .....+.......++|++...|+-+.
T Consensus 24 v~kai~~gkaklViiA~D~~-~---------~~~~~i~~~c~~~~Ip~~~~~~tk~e 70 (99)
T PRK01018 24 TIKAIKLGKAKLVIVASNCP-K---------DIKEDIEYYAKLSGIPVYEYEGSSVE 70 (99)
T ss_pred HHHHHHcCCceEEEEeCCCC-H---------HHHHHHHHHHHHcCCCEEEECCCHHH
Confidence 33445556789999999951 1 11235555556789999877665433
No 164
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=34.68 E-value=36 Score=31.55 Aligned_cols=20 Identities=10% Similarity=0.436 Sum_probs=16.7
Q ss_pred HHHHHHHhhhCCCEEEEeCc
Q 039188 35 RVMSTVLDDEAPGLVIYLGD 54 (341)
Q Consensus 35 ~~l~~~l~~~~pD~vv~tGD 54 (341)
+.+..++.+.+||.+|+||=
T Consensus 143 ~~i~~Ll~~~~PDIlViTGH 162 (283)
T TIGR02855 143 EKVLDLIEEVRPDILVITGH 162 (283)
T ss_pred HHHHHHHHHhCCCEEEEeCc
Confidence 46677788899999999993
No 165
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=33.99 E-value=37 Score=31.61 Aligned_cols=21 Identities=14% Similarity=0.442 Sum_probs=17.1
Q ss_pred HHHHHHHHhhhCCCEEEEeCc
Q 039188 34 SRVMSTVLDDEAPGLVIYLGD 54 (341)
Q Consensus 34 ~~~l~~~l~~~~pD~vv~tGD 54 (341)
-+.+.+++.+.+||.||+||=
T Consensus 143 p~~i~~Ll~~~~PDIlViTGH 163 (287)
T PF05582_consen 143 PEKIYRLLEEYRPDILVITGH 163 (287)
T ss_pred hHHHHHHHHHcCCCEEEEeCc
Confidence 346677788899999999993
No 166
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=33.91 E-value=1.5e+02 Score=24.80 Aligned_cols=54 Identities=13% Similarity=0.190 Sum_probs=31.7
Q ss_pred HHHHHHHHhhh---CCCEEEEeC---cccCCCc---cchhhHHHHHHHHHHHHHh--CCCCEEEE
Q 039188 34 SRVMSTVLDDE---APGLVIYLG---DVITANN---IAIANASLYWDQAISPTRA--RGIPWASV 87 (341)
Q Consensus 34 ~~~l~~~l~~~---~pD~vv~tG---Dl~~~~~---~~~~~~~~~~~~~~~~l~~--~~iP~~~i 87 (341)
+..+.+.+... +||+||+.- |+..... ...+.....++.+++.+.+ .+.+++++
T Consensus 49 ~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ii~~ 113 (199)
T cd01838 49 LKVLPKIFLEEKLAQPDLVTIFFGANDAALPGQPQHVPLDEYKENLRKIVSHLKSLSPKTKVILI 113 (199)
T ss_pred HHHHHHhcCccccCCceEEEEEecCccccCCCCCCcccHHHHHHHHHHHHHHHHhhCCCCeEEEe
Confidence 34444444444 799998866 7765432 1223344456777777776 56666655
No 167
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=32.34 E-value=1.6e+02 Score=21.87 Aligned_cols=48 Identities=13% Similarity=0.077 Sum_probs=32.5
Q ss_pred HHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 039188 37 MSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVFGNHDDA 94 (341)
Q Consensus 37 l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~GNHD~~ 94 (341)
..+.+..-+..+||+..|.-. ...+.+.....+.++|++.++=+.|..
T Consensus 19 v~kai~~gkaklViiA~D~~~----------~~~~~i~~~c~~~~Vp~~~~~s~~eLG 66 (82)
T PRK13602 19 TVKALKRGSVKEVVVAEDADP----------RLTEKVEALANEKGVPVSKVDSMKKLG 66 (82)
T ss_pred HHHHHHcCCeeEEEEECCCCH----------HHHHHHHHHHHHcCCCEEEECCHHHHH
Confidence 444556678999999999732 122455556667899999887555544
No 168
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=32.11 E-value=61 Score=25.11 Aligned_cols=48 Identities=15% Similarity=0.183 Sum_probs=31.4
Q ss_pred hHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEE-EcC
Q 039188 32 NSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWAS-VFG 89 (341)
Q Consensus 32 ~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~-i~G 89 (341)
+..+.+++++...+...|++|-++...-. ..+...+.+...|..+ +||
T Consensus 31 e~~~~l~~l~~~~d~gII~Ite~~~~~i~----------e~i~~~~~~~~~P~ii~IP~ 79 (100)
T PRK02228 31 KLDEAVEEVLEDDDVGILVMHDDDLEKLP----------RRLRRTLEESVEPTVVTLGG 79 (100)
T ss_pred HHHHHHHHHhhCCCEEEEEEehhHhHhhH----------HHHHHHHhcCCCCEEEEECC
Confidence 45667777766677889999999865432 1333335567788766 554
No 169
>KOG4184 consensus Predicted sugar kinase [Carbohydrate transport and metabolism; General function prediction only]
Probab=31.86 E-value=68 Score=30.93 Aligned_cols=52 Identities=17% Similarity=0.163 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhC--CCCEE
Q 039188 33 SSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRAR--GIPWA 85 (341)
Q Consensus 33 ~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~--~iP~~ 85 (341)
.++.+.+.|+..+||+||++|=-.-..-...+. .+-++++...|.+. ++|+.
T Consensus 226 ~~E~f~~Al~~fqPdLvVvsGlhmme~qske~r-~~rl~~V~r~L~~iP~gip~H 279 (478)
T KOG4184|consen 226 AVEQFTDALKMFQPDLVVVSGLHMMEMQSKEER-EARLQQVVRSLSDIPTGIPVH 279 (478)
T ss_pred HHHHHHHHHHHhCCCEEEEechhHHhhhhHHHH-HHHHHHHHHHHhcCCCCCchh
Confidence 456666777888999999999544322211111 12245555555442 45544
No 170
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=31.70 E-value=2e+02 Score=24.37 Aligned_cols=53 Identities=19% Similarity=0.310 Sum_probs=30.9
Q ss_pred HHHHHHHhhhCCCEEEEe---CcccCCCcc---------c-hhhHHHHHHHHHHHHHhCCCCEEEE
Q 039188 35 RVMSTVLDDEAPGLVIYL---GDVITANNI---------A-IANASLYWDQAISPTRARGIPWASV 87 (341)
Q Consensus 35 ~~l~~~l~~~~pD~vv~t---GDl~~~~~~---------~-~~~~~~~~~~~~~~l~~~~iP~~~i 87 (341)
..+.+.+.+.+||.|+++ -|+...... . .+.....+..+++.+.+.+++++++
T Consensus 49 ~~~~~~l~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~~~~~~~vili 114 (200)
T cd01829 49 EKLKELIAEEKPDVVVVFLGANDRQDIRDGDGYLKFGSPEWEEEYRQRIDELLNVARAKGVPVIWV 114 (200)
T ss_pred HHHHHHHhcCCCCEEEEEecCCCCccccCCCceeecCChhHHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 345666667899999887 244321110 0 1223344567777777677887765
No 171
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=31.51 E-value=26 Score=34.64 Aligned_cols=44 Identities=14% Similarity=0.036 Sum_probs=29.4
Q ss_pred EEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 039188 48 LVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVFGNHDDAA 95 (341)
Q Consensus 48 ~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~GNHD~~~ 95 (341)
--|+.||+++.+.. +-+.+.-++..+.-..--++.-.|||+.-.
T Consensus 195 pYvFNGDFVDRGk~----siEvLmiL~a~~lv~P~~~~LNRGNHED~m 238 (631)
T KOG0377|consen 195 PYVFNGDFVDRGKR----SIEVLMILFALYLVYPNAVHLNRGNHEDHM 238 (631)
T ss_pred CeeecCchhhcccc----chhhHHHHHHHHhcCchhhhccCCchHHHH
Confidence 35789999997763 233334444444444556888999999864
No 172
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=31.02 E-value=1.5e+02 Score=26.56 Aligned_cols=43 Identities=19% Similarity=0.294 Sum_probs=28.9
Q ss_pred HHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEE
Q 039188 36 VMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASV 87 (341)
Q Consensus 36 ~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i 87 (341)
.....+++.+|||||+.|=.---... ....+.+.+.++|..+|
T Consensus 51 av~~~~e~~~pDfvi~isPNpaaPGP---------~kARE~l~~s~~Paiii 93 (277)
T COG1927 51 AVTEMLEEFNPDFVIYISPNPAAPGP---------KKAREILSDSDVPAIII 93 (277)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCCc---------hHHHHHHhhcCCCEEEe
Confidence 44455667899999999876543321 14445566789998865
No 173
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=30.71 E-value=2e+02 Score=27.68 Aligned_cols=79 Identities=10% Similarity=0.103 Sum_probs=44.8
Q ss_pred CCeEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeC--cccCCCccchhhHHHHHHHHHHHHHhCCC
Q 039188 5 APFKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLG--DVITANNIAIANASLYWDQAISPTRARGI 82 (341)
Q Consensus 5 ~~~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tG--Dl~~~~~~~~~~~~~~~~~~~~~l~~~~i 82 (341)
+.++.+.+||+--...... ....+.++.++..+.+.+|||||+-= ++..+......+..++.+++.+....+++
T Consensus 158 advrn~dltd~~Gaa~~~d----~l~pkl~rRfek~~~Q~rp~~vViDp~v~f~~G~s~s~vqv~~fi~~~rkla~~l~c 233 (402)
T COG3598 158 ADVRNMDLTDVSGAADESD----VLSPKLYRRFEKILEQKRPDFVVIDPFVAFYEGKSISDVQVKEFIKKTRKLARNLEC 233 (402)
T ss_pred HhhhheeccccccCCCccc----cccHHHHHHHHHHHHHhCCCeEEEcchhhhcCCccchhHHHHHHHHHHHHHHHhcCC
Confidence 3478888888876443211 11124567777778888999998721 11112222223455566666665566666
Q ss_pred CEEEE
Q 039188 83 PWASV 87 (341)
Q Consensus 83 P~~~i 87 (341)
-+.++
T Consensus 234 aIiy~ 238 (402)
T COG3598 234 AIIYI 238 (402)
T ss_pred eEEEE
Confidence 65554
No 174
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=30.26 E-value=1.7e+02 Score=24.58 Aligned_cols=43 Identities=16% Similarity=0.097 Sum_probs=27.1
Q ss_pred hhCCCEEEEeC---cccCCCccchhhHHHHHHHHHHHHHh--CCCCEEEE
Q 039188 43 DEAPGLVIYLG---DVITANNIAIANASLYWDQAISPTRA--RGIPWASV 87 (341)
Q Consensus 43 ~~~pD~vv~tG---Dl~~~~~~~~~~~~~~~~~~~~~l~~--~~iP~~~i 87 (341)
..+||+|++.. |+..... .++..+.+.++++.+.+ .+.+++++
T Consensus 65 ~~~pd~Vii~~G~ND~~~~~~--~~~~~~~l~~li~~i~~~~~~~~iiv~ 112 (191)
T cd01836 65 ETRFDVAVISIGVNDVTHLTS--IARWRKQLAELVDALRAKFPGARVVVT 112 (191)
T ss_pred cCCCCEEEEEecccCcCCCCC--HHHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 46899887742 6654332 23445566788887776 56777654
No 175
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=30.13 E-value=2e+02 Score=26.58 Aligned_cols=44 Identities=11% Similarity=0.373 Sum_probs=30.1
Q ss_pred EEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCcccCCCc
Q 039188 8 KIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVITANN 60 (341)
Q Consensus 8 ~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~ 60 (341)
+-++++|-.+.... -..+...|.+.+...++| +|++|+..-+..
T Consensus 82 raili~d~~~~~~d--------~~~ta~~Laa~~~~~~~~-LVl~G~qa~D~~ 125 (260)
T COG2086 82 RAILITDRAFAGAD--------PLATAKALAAAVKKIGPD-LVLTGKQAIDGD 125 (260)
T ss_pred eEEEEecccccCcc--------HHHHHHHHHHHHHhcCCC-EEEEecccccCC
Confidence 56777776654321 124566777778888999 888999887554
No 176
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=30.05 E-value=82 Score=30.53 Aligned_cols=52 Identities=15% Similarity=0.107 Sum_probs=29.1
Q ss_pred hCCCEEEEeCcccCCCccchhh----HHHH--HHHHHHHH---HhCCCCEEEEcCCCCCCC
Q 039188 44 EAPGLVIYLGDVITANNIAIAN----ASLY--WDQAISPT---RARGIPWASVFGNHDDAA 95 (341)
Q Consensus 44 ~~pD~vv~tGDl~~~~~~~~~~----~~~~--~~~~~~~l---~~~~iP~~~i~GNHD~~~ 95 (341)
.+.|++++.||+=.-....+.. ...| +..+.+-. .+..||.++|-|||+...
T Consensus 29 tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~APVlTIFIGGNHEAsn 89 (456)
T KOG2863|consen 29 TKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAPVLTIFIGGNHEASN 89 (456)
T ss_pred CCccEEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCceeEEEecCchHHHH
Confidence 3789999999985422211100 0111 11222211 234678889999999864
No 177
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=29.99 E-value=88 Score=28.89 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=29.2
Q ss_pred CCCCeEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCcccC
Q 039188 3 AGAPFKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVIT 57 (341)
Q Consensus 3 ~~~~~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~ 57 (341)
.+|+.+|++.||++--. ++ ..++++ .+.+||.+|+.|=.+.
T Consensus 173 ~dg~~~i~faSDvqGp~---------~~-~~l~~i----~e~~P~v~ii~GPpty 213 (304)
T COG2248 173 TDGKSSIVFASDVQGPI---------ND-EALEFI----LEKRPDVLIIGGPPTY 213 (304)
T ss_pred ecCCeEEEEcccccCCC---------cc-HHHHHH----HhcCCCEEEecCCchh
Confidence 47889999999998422 22 223333 3459999999999983
No 178
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=29.85 E-value=2.1e+02 Score=24.71 Aligned_cols=55 Identities=9% Similarity=0.099 Sum_probs=37.0
Q ss_pred HHHHHHhhhCCCEEEEeCcccC----CCccch--hhHHHHHHHHHHHHHhCCCCEEEEcCC
Q 039188 36 VMSTVLDDEAPGLVIYLGDVIT----ANNIAI--ANASLYWDQAISPTRARGIPWASVFGN 90 (341)
Q Consensus 36 ~l~~~l~~~~pD~vv~tGDl~~----~~~~~~--~~~~~~~~~~~~~l~~~~iP~~~i~GN 90 (341)
.+++.|.+...|+++++--.+- +..... .+-.++...+.+.|.+.++|++.|-|-
T Consensus 105 ~~~~~i~~~r~DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~l~~~L~~~~~~~v~i~~~ 165 (187)
T COG3172 105 FLQALIAEYRFDLTLLLEPNTPWVADGLRSLGSSVQRQEFQNLLEQMLEENNIPFVVIEGE 165 (187)
T ss_pred hHHHHHhhcccceEEEcCCCCceeCCCccccccHhHHHHHHHHHHHHHHHhCCcEEEEcCC
Confidence 6777788889999988876652 221111 122344455666888899999999884
No 179
>PRK10799 metal-binding protein; Provisional
Probab=29.37 E-value=73 Score=28.96 Aligned_cols=20 Identities=10% Similarity=0.190 Sum_probs=13.5
Q ss_pred hHHHHHHcCCCceEEEeccccC
Q 039188 259 GIMDILVNRSSVKAVFAGHNHG 280 (341)
Q Consensus 259 ~~~~~l~~~~~V~~v~~GH~H~ 280 (341)
+.++.+.+ .++ .+++-|++.
T Consensus 81 ~~~~~li~-~~i-~vy~~Htn~ 100 (247)
T PRK10799 81 NRLKTLLA-NDI-NLYGWHLPL 100 (247)
T ss_pred HHHHHHHH-CCC-eEEEEecch
Confidence 34445544 355 899999997
No 180
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=29.15 E-value=98 Score=27.30 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=22.9
Q ss_pred CCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCE--------------EEEcCCCCCC
Q 039188 45 APGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPW--------------ASVFGNHDDA 94 (341)
Q Consensus 45 ~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~--------------~~i~GNHD~~ 94 (341)
.||+||+++= .. + ..++....+.+||+ |.||||-|..
T Consensus 108 ~Pdlliv~dp----~~-------~--~~Av~EA~~l~IP~Iai~DTn~dp~~vdypIP~Ndds~ 158 (196)
T TIGR01012 108 EPEVVVVTDP----RA-------D--HQALKEASEVGIPIVALCDTDNPLRYVDLVIPTNNKGR 158 (196)
T ss_pred CCCEEEEECC----cc-------c--cHHHHHHHHcCCCEEEEeeCCCCCccCCEEECCCCchH
Confidence 5898888631 11 0 13344445689997 5678888776
No 181
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=28.96 E-value=31 Score=30.36 Aligned_cols=13 Identities=23% Similarity=0.445 Sum_probs=11.1
Q ss_pred CceEEEeccccCC
Q 039188 269 SVKAVFAGHNHGL 281 (341)
Q Consensus 269 ~V~~v~~GH~H~n 281 (341)
.+.++||||+|..
T Consensus 144 ~~dl~lSGHtHgG 156 (193)
T cd08164 144 KPGLILTGHDHEG 156 (193)
T ss_pred CCCEEEeCccCCC
Confidence 5679999999974
No 182
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=28.52 E-value=1e+02 Score=26.10 Aligned_cols=47 Identities=23% Similarity=0.255 Sum_probs=32.3
Q ss_pred HHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 039188 38 STVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVFGNHDD 93 (341)
Q Consensus 38 ~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~GNHD~ 93 (341)
.+.+...+||+||+.-|-.+-. ... .++..+.++++|+.++.==-|.
T Consensus 71 ~~~l~~~~~D~ii~VvDa~~l~-------r~l--~l~~ql~e~g~P~vvvlN~~D~ 117 (156)
T PF02421_consen 71 RDYLLSEKPDLIIVVVDATNLE-------RNL--YLTLQLLELGIPVVVVLNKMDE 117 (156)
T ss_dssp HHHHHHTSSSEEEEEEEGGGHH-------HHH--HHHHHHHHTTSSEEEEEETHHH
T ss_pred HHHHhhcCCCEEEEECCCCCHH-------HHH--HHHHHHHHcCCCEEEEEeCHHH
Confidence 4445568999999999976521 122 4566777899999987644444
No 183
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=28.41 E-value=94 Score=26.93 Aligned_cols=45 Identities=24% Similarity=0.435 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEcCC
Q 039188 33 SSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVFGN 90 (341)
Q Consensus 33 ~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~GN 90 (341)
+...+.+.++.-+||++|+.+- +.|-.++..+.+.++|++++-|=
T Consensus 83 ~~~~~~rfl~~~~P~~~i~~Et-------------ElWPnll~~a~~~~ip~~LvNar 127 (186)
T PF04413_consen 83 FPWAVRRFLDHWRPDLLIWVET-------------ELWPNLLREAKRRGIPVVLVNAR 127 (186)
T ss_dssp SHHHHHHHHHHH--SEEEEES-----------------HHHHHH-----S-EEEEEE-
T ss_pred CHHHHHHHHHHhCCCEEEEEcc-------------ccCHHHHHHHhhcCCCEEEEeee
Confidence 4456778888899999988753 35667888888899999998663
No 184
>PF10994 DUF2817: Protein of unknown function (DUF2817); InterPro: IPR021259 This family of proteins has no known function.
Probab=28.19 E-value=93 Score=29.93 Aligned_cols=46 Identities=17% Similarity=0.138 Sum_probs=28.9
Q ss_pred EEEEEeCCCCCCCCCC-CHHHHHHHHHHhhhhCCCCCCCcEEEEe-cCch
Q 039188 180 YLYFLDSGGGSYPQVI-SSEQAEWFLHKAQEINPDSRVPEIVFWH-IPSK 227 (341)
Q Consensus 180 ~l~~LDS~~~~~~~~i-~~~Ql~WL~~~L~~~~~~~~~~~ivf~H-~Pl~ 227 (341)
+++++=|+..+..|.- |.-|+.||++.+....+ ..+.|+|.| +.|.
T Consensus 52 ~lLv~~SGtHGVEGf~GSaiQ~~~L~~~~~~~~~--~~~avllVHAlNPy 99 (341)
T PF10994_consen 52 RLLVLTSGTHGVEGFAGSAIQIALLREDLARSLP--AGVAVLLVHALNPY 99 (341)
T ss_pred eEEEEEecCCcccccccHHHHHHHHHcccccccC--CCCeEEEEEccCcc
Confidence 4667777754333333 56699999997555433 246788887 4443
No 185
>PTZ00346 histone deacetylase; Provisional
Probab=28.15 E-value=1.7e+02 Score=29.03 Aligned_cols=47 Identities=23% Similarity=0.417 Sum_probs=29.1
Q ss_pred HHHhhhCCCEEEEe-------CcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEcC
Q 039188 39 TVLDDEAPGLVIYL-------GDVITANNIAIANASLYWDQAISPTRARGIPWASVFG 89 (341)
Q Consensus 39 ~~l~~~~pD~vv~t-------GDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~G 89 (341)
.++++.+||+||+. ||-+-.-.. +.+-+.++.+.+.+.++|++++.|
T Consensus 262 p~l~~F~PdlIvvsaG~Da~~~DpLg~l~L----T~~g~~~~~~~l~~~~~plv~vle 315 (429)
T PTZ00346 262 SIVRRYSPDAIVLQCGADSLAGDRLGLLNL----SSFGHGQCVQAVRDLGIPMLALGG 315 (429)
T ss_pred HHHHhcCCCEEEEECCccCCCCCCCCCcee----CHHHHHHHHHHHHhcCCCEEEEeC
Confidence 34556799998763 333222221 233456777888888999887644
No 186
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=28.10 E-value=1.6e+02 Score=27.90 Aligned_cols=47 Identities=21% Similarity=0.189 Sum_probs=28.4
Q ss_pred HHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEcCCCC
Q 039188 34 SRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVFGNHD 92 (341)
Q Consensus 34 ~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~GNHD 92 (341)
...+.+++.+.+||+|+..| - .+.. . .+.......++|+++..+|+.
T Consensus 74 ~~~~~~~l~~~kPdivi~~~-~-~~~~------~----~~a~~a~~~~ip~i~~~~~~~ 120 (380)
T PRK00025 74 RRRLKRRLLAEPPDVFIGID-A-PDFN------L----RLEKKLRKAGIPTIHYVSPSV 120 (380)
T ss_pred HHHHHHHHHHcCCCEEEEeC-C-CCCC------H----HHHHHHHHCCCCEEEEeCCch
Confidence 33455566778999999987 3 2222 1 111222345899988777663
No 187
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=27.79 E-value=5.3e+02 Score=24.46 Aligned_cols=54 Identities=17% Similarity=0.176 Sum_probs=32.2
Q ss_pred CCCCChhHHHHHHHHHhh--hCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEE
Q 039188 26 GPLQDVNSSRVMSTVLDD--EAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWA 85 (341)
Q Consensus 26 ~~~~~~~~~~~l~~~l~~--~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~ 85 (341)
||.-...-.+.+.+.+.. .+-|+||++|=+=-+-. .++|.++++.+.+.+++++
T Consensus 108 Gp~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~------~d~y~~li~~~~~~g~~vi 163 (310)
T COG1105 108 GPEISEAELEQFLEQLKALLESDDIVVLSGSLPPGVP------PDAYAELIRILRQQGAKVI 163 (310)
T ss_pred CCCCCHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCC------HHHHHHHHHHHHhcCCeEE
Confidence 444444444444444443 46799999998866554 3445666666666555544
No 188
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=27.74 E-value=2.9e+02 Score=22.63 Aligned_cols=52 Identities=27% Similarity=0.331 Sum_probs=31.6
Q ss_pred HHHHHHHHhhhCCCEEEEe-C--cccCCCccchhhHHHHHHHHHHHHHhCCCCEEEE
Q 039188 34 SRVMSTVLDDEAPGLVIYL-G--DVITANNIAIANASLYWDQAISPTRARGIPWASV 87 (341)
Q Consensus 34 ~~~l~~~l~~~~pD~vv~t-G--Dl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i 87 (341)
+..+.+.+...+||+|++. | |...+. ..++....+.++++.+.+.+.+++++
T Consensus 53 ~~~l~~~~~~~~pd~v~i~~G~ND~~~~~--~~~~~~~~l~~li~~~~~~~~~vil~ 107 (177)
T cd01822 53 LARLPALLAQHKPDLVILELGGNDGLRGI--PPDQTRANLRQMIETAQARGAPVLLV 107 (177)
T ss_pred HHHHHHHHHhcCCCEEEEeccCcccccCC--CHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 3456566666799977664 3 332222 22334455678888887778887765
No 189
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=27.55 E-value=66 Score=28.28 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=22.0
Q ss_pred CChhHHHHHHHHHhhhCCCEEEEeCcc
Q 039188 29 QDVNSSRVMSTVLDDEAPGLVIYLGDV 55 (341)
Q Consensus 29 ~~~~~~~~l~~~l~~~~pD~vv~tGDl 55 (341)
...+..+.+.+.+++.+||+|+..|=-
T Consensus 44 ~f~~s~~~l~~~i~~~qPd~vl~iG~A 70 (207)
T COG2039 44 VFKKSIDALVQAIAEVQPDLVLAIGQA 70 (207)
T ss_pred cHHHHHHHHHHHHHhhCCCeEEEeccc
Confidence 345667788888899999999999953
No 190
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=27.24 E-value=64 Score=32.24 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=31.1
Q ss_pred HHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 039188 38 STVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVFGNHDDA 94 (341)
Q Consensus 38 ~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~GNHD~~ 94 (341)
...+++.-.|-+=+.||+.|.++.+ +.+++.|.+. --+-+--||||.-
T Consensus 183 a~~iqrLvVDhLHiVGDIyDRGP~p--------d~Imd~L~~y-hsvDiQWGNHDil 230 (648)
T COG3855 183 AYLIQRLVVDHLHIVGDIYDRGPYP--------DKIMDTLINY-HSVDIQWGNHDIL 230 (648)
T ss_pred HHHHHHHhhhheeeecccccCCCCc--------hHHHHHHhhc-ccccccccCcceE
Confidence 3334456789999999999988742 3555555442 1123346999996
No 191
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=27.02 E-value=1.4e+02 Score=27.35 Aligned_cols=45 Identities=24% Similarity=0.358 Sum_probs=24.9
Q ss_pred HHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEc
Q 039188 35 RVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVF 88 (341)
Q Consensus 35 ~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~ 88 (341)
+...+.+++.+|||||+.+=.---.. . ....+.+.+.++|.++|-
T Consensus 49 ~~~~~~~~~~~pdf~I~isPN~~~PG------P---~~ARE~l~~~~iP~IvI~ 93 (276)
T PF01993_consen 49 EVVTKMLKEWDPDFVIVISPNAAAPG------P---TKAREMLSAKGIPCIVIS 93 (276)
T ss_dssp HHHHHHHHHH--SEEEEE-S-TTSHH------H---HHHHHHHHHSSS-EEEEE
T ss_pred HHHHHHHHhhCCCEEEEECCCCCCCC------c---HHHHHHHHhCCCCEEEEc
Confidence 34445556789999999886432211 1 245556677899998763
No 192
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=26.76 E-value=1.3e+02 Score=29.01 Aligned_cols=36 Identities=11% Similarity=0.143 Sum_probs=26.4
Q ss_pred CCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEcC
Q 039188 45 APGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVFG 89 (341)
Q Consensus 45 ~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~G 89 (341)
+||.||++|=+... . .+++.+.+.+... .|+++.||
T Consensus 293 ~pD~IV~gGGI~e~-~-------~l~~~I~~~l~~~-a~v~~~pg 328 (351)
T TIGR02707 293 KVDAIVLTGGLAYS-K-------YFVSEIIKRVSFI-APVLVYPG 328 (351)
T ss_pred CCCEEEEcchhhcC-H-------HHHHHHHHHHHhh-CCEEEeCC
Confidence 79999999988642 1 1345666666654 99999999
No 193
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=26.49 E-value=62 Score=27.28 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=15.3
Q ss_pred HHHHHHHHhhhCCCEEEEe
Q 039188 34 SRVMSTVLDDEAPGLVIYL 52 (341)
Q Consensus 34 ~~~l~~~l~~~~pD~vv~t 52 (341)
.+.|.+.|++.+||+||.|
T Consensus 78 ~~~l~~~l~~~~PD~IIsT 96 (169)
T PF06925_consen 78 ARRLIRLLREFQPDLIIST 96 (169)
T ss_pred HHHHHHHHhhcCCCEEEEC
Confidence 3466777788999999987
No 194
>PTZ00365 60S ribosomal protein L7Ae-like; Provisional
Probab=26.42 E-value=1.8e+02 Score=26.83 Aligned_cols=51 Identities=14% Similarity=0.141 Sum_probs=33.6
Q ss_pred HHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHH-HHHHHhCCCCEEEEcCCCCCC
Q 039188 34 SRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQA-ISPTRARGIPWASVFGNHDDA 94 (341)
Q Consensus 34 ~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~-~~~l~~~~iP~~~i~GNHD~~ 94 (341)
+..+...|...+.-+||+.+|.-.. ....+ -..+...+|||+.+.+=-++.
T Consensus 137 in~VtklIekkKAkLVIIA~DVsP~----------t~kk~LP~LC~k~~VPY~iv~sK~eLG 188 (266)
T PTZ00365 137 LNHVTDLVEYKKAKLVVIAHDVDPI----------ELVCFLPALCRKKEVPYCIIKGKSRLG 188 (266)
T ss_pred hHHHHHHHHhCCccEEEEeCCCCHH----------HHHHHHHHHHhccCCCEEEECCHHHHH
Confidence 4455666677789999999997321 11232 245566799999887665554
No 195
>PTZ00063 histone deacetylase; Provisional
Probab=26.29 E-value=2e+02 Score=28.77 Aligned_cols=47 Identities=19% Similarity=0.266 Sum_probs=29.0
Q ss_pred HHHhhhCCCEEEEe-------CcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEcC
Q 039188 39 TVLDDEAPGLVIYL-------GDVITANNIAIANASLYWDQAISPTRARGIPWASVFG 89 (341)
Q Consensus 39 ~~l~~~~pD~vv~t-------GDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~G 89 (341)
.+++..+||+||+. ||=.-.... +..-+.++++.+.+.++|++++.|
T Consensus 244 ~~i~~f~Pd~IvvqaG~D~~~~DpLg~l~L----t~~g~~~~~~~~~~~~~pil~l~g 297 (436)
T PTZ00063 244 KCVEVYRPGAIVLQCGADSLTGDRLGRFNL----TIKGHAACVEFVRSLNIPLLVLGG 297 (436)
T ss_pred HHHHHhCCCEEEEECCccccCCCCCCCccc----CHHHHHHHHHHHHhcCCCEEEEeC
Confidence 44556799998863 342222221 223345677778888999988763
No 196
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=25.79 E-value=3.1e+02 Score=23.46 Aligned_cols=48 Identities=17% Similarity=0.165 Sum_probs=27.6
Q ss_pred HHHHHHHHHhh-hCCCEEEEeC---cccCCCccchhhHHHHHHHHHHHHHhC
Q 039188 33 SSRVMSTVLDD-EAPGLVIYLG---DVITANNIAIANASLYWDQAISPTRAR 80 (341)
Q Consensus 33 ~~~~l~~~l~~-~~pD~vv~tG---Dl~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (341)
.+..+.+.+.. .+||+|++.. |+.........+....+.++++.+.+.
T Consensus 66 ~l~~l~~~l~~~~~pd~vii~lGtND~~~~~~~~~~~~~~~l~~lv~~i~~~ 117 (208)
T cd01839 66 GLTYLPQALESHSPLDLVIIMLGTNDLKSYFNLSAAEIAQGLGALVDIIRTA 117 (208)
T ss_pred hHHHHHHHHHhCCCCCEEEEeccccccccccCCCHHHHHHHHHHHHHHHHhc
Confidence 35567776765 6899887754 655332112233444566777766653
No 197
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=25.76 E-value=3.1e+02 Score=22.48 Aligned_cols=51 Identities=10% Similarity=0.139 Sum_probs=30.7
Q ss_pred HHHHHHHHhhhCCCEEEEe-C--cccCCCccchhhHHHHHHHHHHHHHh--CCCCEEEE
Q 039188 34 SRVMSTVLDDEAPGLVIYL-G--DVITANNIAIANASLYWDQAISPTRA--RGIPWASV 87 (341)
Q Consensus 34 ~~~l~~~l~~~~pD~vv~t-G--Dl~~~~~~~~~~~~~~~~~~~~~l~~--~~iP~~~i 87 (341)
.+.+.+.+ ..+||+|++. | |+..+.+ .++..+.+..+++.+.+ .+++++++
T Consensus 38 ~~~l~~~~-~~~pd~vvl~~G~ND~~~~~~--~~~~~~~l~~li~~~~~~~~~~~vi~~ 93 (169)
T cd01828 38 LARLDEDV-ALQPKAIFIMIGINDLAQGTS--DEDIVANYRTILEKLRKHFPNIKIVVQ 93 (169)
T ss_pred HHHHHHHh-ccCCCEEEEEeeccCCCCCCC--HHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 34455555 5689987763 4 6644322 23344556777877777 67777764
No 198
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=25.09 E-value=1.9e+02 Score=22.92 Aligned_cols=49 Identities=10% Similarity=-0.084 Sum_probs=31.2
Q ss_pred HHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCC--CEEEEcCC
Q 039188 34 SRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGI--PWASVFGN 90 (341)
Q Consensus 34 ~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~i--P~~~i~GN 90 (341)
.+.+.+.+.+.+||+|++++-+... ...+.++++.|.+.+. +.+++-|+
T Consensus 39 ~e~~~~~a~~~~~d~V~iS~~~~~~--------~~~~~~~~~~L~~~~~~~i~i~~GG~ 89 (122)
T cd02071 39 PEEIVEAAIQEDVDVIGLSSLSGGH--------MTLFPEVIELLRELGAGDILVVGGGI 89 (122)
T ss_pred HHHHHHHHHHcCCCEEEEcccchhh--------HHHHHHHHHHHHhcCCCCCEEEEECC
Confidence 3455566677899999999876322 2234566777766533 34556776
No 199
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=24.87 E-value=2.2e+02 Score=23.55 Aligned_cols=32 Identities=16% Similarity=0.128 Sum_probs=23.3
Q ss_pred CEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 039188 47 GLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVFGNHDDA 94 (341)
Q Consensus 47 D~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~GNHD~~ 94 (341)
-.+|.|.|- ++.+.+.+.+||+..+.|.+=..
T Consensus 99 ~~iVaTnD~----------------eLk~rlr~~GIPvi~lr~r~~~~ 130 (136)
T COG1412 99 RYIVATNDK----------------ELKRRLRENGIPVITLRQRKLLI 130 (136)
T ss_pred CEEEEeCCH----------------HHHHHHHHcCCCEEEEeCCeEEE
Confidence 478888872 55556667799999999776443
No 200
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=24.72 E-value=2.2e+02 Score=26.97 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=18.8
Q ss_pred HHHHHHHHHhhhCCCEEEEeCcc
Q 039188 33 SSRVMSTVLDDEAPGLVIYLGDV 55 (341)
Q Consensus 33 ~~~~l~~~l~~~~pD~vv~tGDl 55 (341)
.+..+.+++.+.+||+|+.-||-
T Consensus 74 ~~~~l~~~l~~~~pDiv~~~gd~ 96 (365)
T TIGR00236 74 MLEGLEELLLEEKPDIVLVQGDT 96 (365)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCc
Confidence 34567777888999999999995
No 201
>cd01139 TroA_f Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=24.58 E-value=1.3e+02 Score=28.41 Aligned_cols=38 Identities=24% Similarity=0.071 Sum_probs=24.9
Q ss_pred hhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEc
Q 039188 42 DDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVF 88 (341)
Q Consensus 42 ~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~ 88 (341)
.+.+||+||.++....... -....+.|.+.++|++.+.
T Consensus 88 ~~l~PDLIi~~~~~~~~~~---------~~~~~~~l~~~gipvv~~~ 125 (342)
T cd01139 88 LTLKPDLVILNIWAKTTAE---------ESGILEKLEQAGIPVVFVD 125 (342)
T ss_pred hhcCCCEEEEeccccccch---------hhHHHHHHHHcCCcEEEEe
Confidence 3469999998875432111 0245556777899999885
No 202
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=23.84 E-value=1.6e+02 Score=22.05 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=29.1
Q ss_pred HHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEc
Q 039188 36 VMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVF 88 (341)
Q Consensus 36 ~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~ 88 (341)
...+.+...+.-+||++.|.-.... .. .+.....+.+||++.++
T Consensus 22 ~v~k~l~~~~~~lvilA~d~~~~~~------~~---~l~~~c~~~~Ip~~~~~ 65 (95)
T PF01248_consen 22 EVLKALKKGKAKLVILAEDCSPDSI------KK---HLPALCEEKNIPYVFVP 65 (95)
T ss_dssp HHHHHHHTTCESEEEEETTSSSGHH------HH---HHHHHHHHTTEEEEEES
T ss_pred HHHHHHHcCCCcEEEEcCCCChhhh------cc---cchhheeccceeEEEEC
Confidence 3445556668999999999854322 11 23334457899998887
No 203
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=23.83 E-value=2.6e+02 Score=25.79 Aligned_cols=52 Identities=15% Similarity=0.100 Sum_probs=36.0
Q ss_pred HHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 039188 34 SRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVFGNHDDA 94 (341)
Q Consensus 34 ~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~GNHD~~ 94 (341)
...+...|+..+.-+||+.+|.-.. +....+-..+.+.+||+..+.+-.++.
T Consensus 137 ~n~VtkaIekkKAkLVIIA~DVsPi---------e~vk~LpaLCrk~~VPY~iVktKaeLG 188 (263)
T PTZ00222 137 LQEVTRAIEKKQARMVVIANNVDPV---------ELVLWMPNLCRANKIPYAIVKDMARLG 188 (263)
T ss_pred HHHHHHHHHcCCceEEEEeCCCCHH---------HHHHHHHHHHHhcCCCEEEECCHHHHH
Confidence 3456666777789999999997322 121235556667899999998876665
No 204
>PF04900 Fcf1: Fcf1; InterPro: IPR006984 This family is comprises of uncharacterised eukaryotic proteins.
Probab=23.13 E-value=2.2e+02 Score=21.78 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHH-hCCCCEEEEcCCC
Q 039188 33 SSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTR-ARGIPWASVFGNH 91 (341)
Q Consensus 33 ~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~-~~~iP~~~i~GNH 91 (341)
+-+.|.+++...+. ++|.|-|- ++.+.+. ..++|+.++.+|+
T Consensus 53 addci~~~~~~~~~-~~VaT~D~----------------~Lr~~lr~~~GvPvi~l~~~~ 95 (101)
T PF04900_consen 53 ADDCILDLAGKNNK-YIVATQDK----------------ELRRRLRKIPGVPVIYLRRNV 95 (101)
T ss_pred HHHHHHHHhccCCe-EEEEecCH----------------HHHHHHhcCCCCCEEEEECCE
Confidence 44556655544444 99999772 3344444 6799999998664
No 205
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=22.69 E-value=3.2e+02 Score=23.19 Aligned_cols=52 Identities=21% Similarity=0.189 Sum_probs=30.4
Q ss_pred HHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEE
Q 039188 34 SRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWA 85 (341)
Q Consensus 34 ~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~ 85 (341)
.+.+.+++++.+||.|++=.-.+..............-.++..+...++|++
T Consensus 50 ~~~l~~~i~~~~Pd~vaiE~~f~~~n~~sa~~l~~arGvi~la~~~~~ipv~ 101 (164)
T PRK00039 50 YDGLSELIDEYQPDEVAIEEVFFNKNPQSALKLGQARGVAILAAAQRGLPVA 101 (164)
T ss_pred HHHHHHHHHHhCCCEEEEehhhhccChHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 4566777788899999988876654321110000112234445566788877
No 206
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=22.55 E-value=2.6e+02 Score=26.14 Aligned_cols=44 Identities=32% Similarity=0.337 Sum_probs=26.6
Q ss_pred HHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEcCC
Q 039188 35 RVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVFGN 90 (341)
Q Consensus 35 ~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~GN 90 (341)
..+.+.+.+.+||+|++.||... . ....+.. ...++|++.+.|+
T Consensus 78 ~~l~~~l~~~~pDvV~~~g~~~~--~--------~~~~~aa--~~~~iPvv~~~~g 121 (363)
T cd03786 78 IGLEAVLLEEKPDLVLVLGDTNE--T--------LAAALAA--FKLGIPVAHVEAG 121 (363)
T ss_pred HHHHHHHHHhCCCEEEEeCCchH--H--------HHHHHHH--HHcCCCEEEEecc
Confidence 34455566679999999998421 1 1011111 2248999988765
No 207
>smart00475 53EXOc 5'-3' exonuclease.
Probab=22.21 E-value=3.2e+02 Score=25.10 Aligned_cols=56 Identities=20% Similarity=0.130 Sum_probs=35.3
Q ss_pred HHHHHHHHHhhhCCCEEEEeCcccCCCccc--------------hhhHHHHHHHHHHHHHhCCCCEEEEcC
Q 039188 33 SSRVMSTVLDDEAPGLVIYLGDVITANNIA--------------IANASLYWDQAISPTRARGIPWASVFG 89 (341)
Q Consensus 33 ~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~--------------~~~~~~~~~~~~~~l~~~~iP~~~i~G 89 (341)
.+..+.++++..+|+.+++.=|--. .+.. .++-...+..+.+.|...++|++..+|
T Consensus 36 ~~~~l~~l~~~~~p~~~~~~fD~~~-~~~R~~l~p~YKa~R~~~pe~L~~q~~~~~~~l~~~gi~~i~~~g 105 (259)
T smart00475 36 FLRMLLKLIKEEKPTYVAVVFDAKG-KTFRHELYPEYKANRPKTPDELLEQIPLIKELLDALGIPVLEVEG 105 (259)
T ss_pred HHHHHHHHHHHcCCCeEEEEEeCCC-CccccchhHHHHhCCCCCCHHHHHHHHHHHHHHHHCCCCEEeeCC
Confidence 4566777777789998888777421 1111 111122345666677778999998887
No 208
>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]
Probab=22.13 E-value=2.2e+02 Score=25.78 Aligned_cols=48 Identities=13% Similarity=0.150 Sum_probs=32.6
Q ss_pred hCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 039188 44 EAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVFGNHDDA 94 (341)
Q Consensus 44 ~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~GNHD~~ 94 (341)
..+|++|++||.=--.+. -+ .+...++++...+.+.+.++++|---..
T Consensus 82 ~~~Dliil~Gd~Q~~~~~--gq-yel~~~~Ld~a~e~g~~~IyTLGGy~vG 129 (258)
T COG2047 82 GERDLIILVGDTQATSSE--GQ-YELTGKILDIAKEFGARMIYTLGGYGVG 129 (258)
T ss_pred CCCcEEEEeccccccCcc--hh-HHHHHHHHHHHHHcCCcEEEEecCcccC
Confidence 357999999996432221 12 2334577778888999999999875554
No 209
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=21.74 E-value=1.5e+02 Score=26.85 Aligned_cols=45 Identities=9% Similarity=0.090 Sum_probs=25.7
Q ss_pred EEEEeCcccCCCcc--c-hhhHHHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 039188 48 LVIYLGDVITANNI--A-IANASLYWDQAISPTRARGIPWASVFGNHDDA 94 (341)
Q Consensus 48 ~vv~tGDl~~~~~~--~-~~~~~~~~~~~~~~l~~~~iP~~~i~GNHD~~ 94 (341)
-++++||.+..... . ......++ +.++.+.++.....+.+| |+..
T Consensus 120 ~~lftGDtl~~~g~g~~~~~~~~~~~-~Sl~~l~~l~~~~~i~pG-H~~~ 167 (248)
T TIGR03413 120 PALFCGDTLFSAGCGRLFEGTPEQMY-DSLQRLAALPDDTLVYCA-HEYT 167 (248)
T ss_pred CEEEEcCccccCCcCCCCCCCHHHHH-HHHHHHHcCCCCeEEECC-CCch
Confidence 48999998764321 1 11122333 344556666555667888 8864
No 210
>PRK06683 hypothetical protein; Provisional
Probab=21.68 E-value=3.4e+02 Score=20.16 Aligned_cols=42 Identities=14% Similarity=0.056 Sum_probs=28.5
Q ss_pred HHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEc
Q 039188 37 MSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVF 88 (341)
Q Consensus 37 l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~ 88 (341)
..+.+..-+..+|++..|.-.. ..+.+.......++|++.++
T Consensus 19 v~kaik~gkaklViiA~Da~~~----------~~~~i~~~~~~~~Vpv~~~~ 60 (82)
T PRK06683 19 TLEAIKNGIVKEVVIAEDADMR----------LTHVIIRTALQHNIPITKVE 60 (82)
T ss_pred HHHHHHcCCeeEEEEECCCCHH----------HHHHHHHHHHhcCCCEEEEC
Confidence 3344556789999999996222 22455555667899998766
No 211
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=21.61 E-value=2.1e+02 Score=24.94 Aligned_cols=43 Identities=14% Similarity=0.226 Sum_probs=29.4
Q ss_pred CCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEcCC
Q 039188 45 APGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVFGN 90 (341)
Q Consensus 45 ~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~GN 90 (341)
..|+++++||.-.-.. ....++...+++.+.+.++..++++|=
T Consensus 14 ~~~illl~g~e~~~~p---~~~~e~a~~vld~a~~~gv~~iitLgG 56 (188)
T TIGR00162 14 GTDLIILVGNTQSLSP---EGQYELVNAIIDVAKKYGARMIYTLGG 56 (188)
T ss_pred CCCEEEEEcCCCCCCh---hhHHHHHHHHHHHHHHcCCCEEEEecC
Confidence 4799999999732111 112346678888889999987777665
No 212
>PF07451 SpoVAD: Stage V sporulation protein AD (SpoVAD); InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation [].; PDB: 3LMA_D 3LM6_A.
Probab=21.61 E-value=81 Score=29.90 Aligned_cols=36 Identities=22% Similarity=0.469 Sum_probs=19.6
Q ss_pred CCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEcCCCC
Q 039188 45 APGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVFGNHD 92 (341)
Q Consensus 45 ~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~GNHD 92 (341)
+.|+ ++.|||.+.-.. ..+. ..+++||++-+.|---
T Consensus 72 dId~-~~aGDLlnQ~i~-----s~f~------ar~l~iPf~GlygACS 107 (329)
T PF07451_consen 72 DIDY-LFAGDLLNQIIS-----SSFA------ARDLGIPFLGLYGACS 107 (329)
T ss_dssp G-SE-EEEEETTCCCCH-----HHHH------HHHHT--EEEB--CCC
T ss_pred HCeE-EEehhhhhhhHH-----HHHH------HHhcCCCccchhhHHH
Confidence 4555 679999997652 3331 2346899998888543
No 213
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=21.43 E-value=2.2e+02 Score=27.33 Aligned_cols=49 Identities=10% Similarity=0.121 Sum_probs=29.4
Q ss_pred HHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEcCCC
Q 039188 36 VMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVFGNH 91 (341)
Q Consensus 36 ~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~GNH 91 (341)
.+.+++.+.+||+|+.|-.+.+... ...+..+.+.. ..++|++.+...+
T Consensus 91 ~l~~~i~~~~pDvIi~thp~~~~~~------~~~l~~~~~~~-~~~~p~~~~~tD~ 139 (382)
T PLN02605 91 EVAKGLMKYKPDIIVSVHPLMQHVP------LRVLRWQGKEL-GKKIPFTTVVTDL 139 (382)
T ss_pred HHHHHHHhcCcCEEEEeCcCcccCH------HHHHHHHhhcc-CCCCCEEEEECCC
Confidence 4556677789999999876655432 11112211111 3589999888655
No 214
>KOG3167 consensus Box H/ACA snoRNP component, involved in ribosomal RNA pseudouridinylation [RNA processing and modification]
Probab=21.37 E-value=1.5e+02 Score=24.63 Aligned_cols=41 Identities=20% Similarity=0.261 Sum_probs=27.3
Q ss_pred CCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 039188 45 APGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVFGNHDDA 94 (341)
Q Consensus 45 ~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~GNHD~~ 94 (341)
.--++|++||..= .+.+..+-....+.++|+.++|---|..
T Consensus 75 eKGl~VlAgd~sP---------iDvi~HlP~lCEd~~vPYvy~psk~dlg 115 (153)
T KOG3167|consen 75 EKGLCVLAGDTSP---------IDVITHLPALCEDRGVPYVYTPSKEDLG 115 (153)
T ss_pred CcceEEEecCCcc---------HHHHhccchhhhccCCCccccccHHHHH
Confidence 4569999999741 2223344455677899999887655554
No 215
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=21.06 E-value=4e+02 Score=21.82 Aligned_cols=51 Identities=12% Similarity=0.104 Sum_probs=28.5
Q ss_pred HHHHHHHhhhCCCEEEEeC---cccCCCccchhhHHHHHHHHHHHHHhC--CCCEEEE
Q 039188 35 RVMSTVLDDEAPGLVIYLG---DVITANNIAIANASLYWDQAISPTRAR--GIPWASV 87 (341)
Q Consensus 35 ~~l~~~l~~~~pD~vv~tG---Dl~~~~~~~~~~~~~~~~~~~~~l~~~--~iP~~~i 87 (341)
+.+...+...+||.|++.. |+..+.+ .++..+.+.++++.+.+. +++++++
T Consensus 41 ~~~~~~~~~~~pd~v~i~~G~ND~~~~~~--~~~~~~~~~~l~~~~~~~~p~~~vi~~ 96 (174)
T cd01841 41 EHIEPQLIQKNPSKVFLFLGTNDIGKEVS--SNQFIKWYRDIIEQIREEFPNTKIYLL 96 (174)
T ss_pred HHHHHHHHhcCCCEEEEEeccccCCCCCC--HHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 3443344456899877653 6655432 233445567777776653 4555543
No 216
>PRK09482 flap endonuclease-like protein; Provisional
Probab=20.99 E-value=3.5e+02 Score=24.87 Aligned_cols=57 Identities=11% Similarity=0.000 Sum_probs=35.7
Q ss_pred HHHHHHHHhhhCCCEEEEeCcccCCC-ccc--------------hhhHHHHHHHHHHHHHhCCCCEEEEcCC
Q 039188 34 SRVMSTVLDDEAPGLVIYLGDVITAN-NIA--------------IANASLYWDQAISPTRARGIPWASVFGN 90 (341)
Q Consensus 34 ~~~l~~~l~~~~pD~vv~tGDl~~~~-~~~--------------~~~~~~~~~~~~~~l~~~~iP~~~i~GN 90 (341)
.+.|.+++...+|+.|++.=|.--.. ... .++-...+..+.+.+...++|++..+|=
T Consensus 35 ~~~l~~ll~~~~p~~i~v~fD~~~~~~~fR~~l~p~YKa~R~~~Pe~l~~Q~~~i~~~l~~~gi~~~~~~g~ 106 (256)
T PRK09482 35 QHALDKLIRHSQPTHAVAVFDGDARSSGWRHQLLPDYKAGRKPMPEALQQGLPAIRAAFEELGIDSWHADGN 106 (256)
T ss_pred HHHHHHHHHHcCCCEEEEEEeCCCCCcccHHHHhHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCEeccCCc
Confidence 55677777888999888887763221 011 1111223455567777789999877773
No 217
>PRK03011 butyrate kinase; Provisional
Probab=20.96 E-value=2.8e+02 Score=26.81 Aligned_cols=41 Identities=7% Similarity=0.044 Sum_probs=28.9
Q ss_pred CCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 039188 45 APGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVFGNHDDA 94 (341)
Q Consensus 45 ~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~GNHD~~ 94 (341)
+||.||+||=+.. .. ..++.+.+.+... .|+.++||+....
T Consensus 295 dpD~IVlgGGI~~-~~-------~l~~~I~~~l~~~-~pv~i~p~~~e~~ 335 (358)
T PRK03011 295 KVDAIVLTGGLAY-SK-------RLVERIKERVSFI-APVIVYPGEDEME 335 (358)
T ss_pred CCCEEEEeCcccc-CH-------HHHHHHHHHHHhh-CCeEEEeCCCHHH
Confidence 7999999998875 22 2334555555543 6999999998754
No 218
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=20.89 E-value=3.3e+02 Score=20.33 Aligned_cols=41 Identities=7% Similarity=-0.083 Sum_probs=27.0
Q ss_pred HHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEE
Q 039188 37 MSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASV 87 (341)
Q Consensus 37 l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i 87 (341)
..+.+..-+.-+|++..|.-. ...+.+.......++|++.+
T Consensus 16 vlkaIk~gkakLViiA~Da~~----------~~~k~i~~~c~~~~Vpv~~~ 56 (82)
T PRK13601 16 TLKAITNCNVLQVYIAKDAEE----------HVTKKIKELCEEKSIKIVYI 56 (82)
T ss_pred HHHHHHcCCeeEEEEeCCCCH----------HHHHHHHHHHHhCCCCEEEe
Confidence 334445578899999999732 12245555666789999633
No 219
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics]
Probab=20.34 E-value=3.4e+02 Score=24.81 Aligned_cols=52 Identities=19% Similarity=0.293 Sum_probs=28.1
Q ss_pred HHHHHHhhhCCCEEEEe--CcccCCCcc-----chhhHHHHHHHHHHHHHhCCCCEEEE
Q 039188 36 VMSTVLDDEAPGLVIYL--GDVITANNI-----AIANASLYWDQAISPTRARGIPWASV 87 (341)
Q Consensus 36 ~l~~~l~~~~pD~vv~t--GDl~~~~~~-----~~~~~~~~~~~~~~~l~~~~iP~~~i 87 (341)
.+.+.+.+.+||+||.. -|+.++... +.+...+.=..++..+..++||++.+
T Consensus 239 ~l~~sl~ef~Pd~VvYNAGTDiLeGDpLG~L~ISp~Gi~~RDelVFr~~R~~~iPvvMl 297 (324)
T KOG1344|consen 239 CLMQSLAEFRPDMVVYNAGTDILEGDPLGNLAISPEGIIERDELVFRTFRALGIPVVML 297 (324)
T ss_pred HHHHHHHhhCCcEEEEeCCCccccCCCCCCeeecccccchhhHHHHHHHHHcCCcEEEE
Confidence 34444556799999864 255544321 11111111134556677789998864
No 220
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=20.27 E-value=2.5e+02 Score=28.27 Aligned_cols=77 Identities=17% Similarity=0.225 Sum_probs=44.0
Q ss_pred CCCeEEEEEecCCCCcCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHH-hCCC
Q 039188 4 GAPFKIVLFADLHFGESAWTDWGPLQDVNSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTR-ARGI 82 (341)
Q Consensus 4 ~~~~~i~~isDlH~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~-~~~i 82 (341)
.++.|+.. ||+-=..-... .+ ...+..+.+.++++..+|++|++.|=.+.+-- ...++.+.+.+. +.++
T Consensus 60 ~~~~r~~~-tdl~E~Di~~~-~g--~~~~L~~~i~ei~~~~~p~~ifv~~TC~t~iI------GdDle~va~~~~~~~gi 129 (457)
T CHL00073 60 FAEPRYAM-AELEEGDISAQ-LN--DYEELKRLCLQIKKDRNPSVIVWIGTCTTEII------KMDLEGMAPKLEAEIGI 129 (457)
T ss_pred cCCcccee-cccCchhhhhh-cC--CHHHHHHHHHHHHHhCCCCEEEEEccCcHHhh------ccCHHHHHHHHHHhhCC
Confidence 34456666 66654432100 01 12234456666777789999999887764322 112345555444 5699
Q ss_pred CEEEEcCC
Q 039188 83 PWASVFGN 90 (341)
Q Consensus 83 P~~~i~GN 90 (341)
|++.+.+|
T Consensus 130 pVV~v~~~ 137 (457)
T CHL00073 130 PIVVARAN 137 (457)
T ss_pred CEEEEeCC
Confidence 99988763
No 221
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=20.24 E-value=1.3e+02 Score=28.38 Aligned_cols=41 Identities=22% Similarity=0.157 Sum_probs=31.1
Q ss_pred EEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEE--EcCCCCCCC
Q 039188 48 LVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWAS--VFGNHDDAA 95 (341)
Q Consensus 48 ~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~--i~GNHD~~~ 95 (341)
+++.+|+-..+...+ -+++.+.|.+.++|+++ .+|+||-..
T Consensus 241 ~~l~~g~~~~~~~~p-------Nr~L~~~L~~~g~~~~yre~~GgHdw~~ 283 (299)
T COG2382 241 IVLTTGGEEGDFLRP-------NRALAAQLEKKGIPYYYREYPGGHDWAW 283 (299)
T ss_pred EEeecCCccccccch-------hHHHHHHHHhcCCcceeeecCCCCchhH
Confidence 888999887766531 14666777888999776 899999974
No 222
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=20.22 E-value=2.9e+02 Score=23.31 Aligned_cols=55 Identities=16% Similarity=0.161 Sum_probs=37.4
Q ss_pred HHHhhhCCCEEEEeCcccCCCccchhh-HHHHHHHHHHHHHhCCCCEEE-EcCCCCC
Q 039188 39 TVLDDEAPGLVIYLGDVITANNIAIAN-ASLYWDQAISPTRARGIPWAS-VFGNHDD 93 (341)
Q Consensus 39 ~~l~~~~pD~vv~tGDl~~~~~~~~~~-~~~~~~~~~~~l~~~~iP~~~-i~GNHD~ 93 (341)
++....+.|.||..|=++.+.+.+++- +.+..+.+.+.-.+.++|+.+ |++=|-.
T Consensus 65 ~La~~~~yDAvv~lG~VIrG~T~Hfd~Va~~~~~gl~~vsl~~~~PV~~GVLt~~~~ 121 (152)
T COG0054 65 KLARTGKYDAVVALGAVIRGETYHFDYVANEVARGLMDVSLETGVPVTFGVLTTDNI 121 (152)
T ss_pred HHHhcCCcceEEEEeeEEeCCCccHHHHHHHHHHHHHHHHHhhCCCeEeeecCCCcH
Confidence 334456899999999999999876432 223345566666678999885 6665444
No 223
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=20.21 E-value=1.1e+02 Score=28.77 Aligned_cols=43 Identities=12% Similarity=0.072 Sum_probs=28.4
Q ss_pred hCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 039188 44 EAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVFGNHDDAA 95 (341)
Q Consensus 44 ~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~GNHD~~~ 95 (341)
-+||+||+||-+.+... +...+.+.+. .-.|+.+.||--+...
T Consensus 295 G~vDaIvLTGGiA~~~~--------f~~~I~~~v~-~iapv~v~PGE~EleA 337 (358)
T COG3426 295 GKVDAIVLTGGIAYEKL--------FVDAIEDRVS-WIAPVIVYPGEDELEA 337 (358)
T ss_pred CCCCEEEEecchhhHHH--------HHHHHHHHHh-hhcceEecCCchHHHH
Confidence 38999999999976532 2233333332 3468999999766653
No 224
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=20.15 E-value=1.3e+02 Score=26.80 Aligned_cols=23 Identities=22% Similarity=0.603 Sum_probs=18.1
Q ss_pred EEEEEEeCCCCCCCCCCCHHHHHHHHHHhhh
Q 039188 179 AYLYFLDSGGGSYPQVISSEQAEWFLHKAQE 209 (341)
Q Consensus 179 ~~l~~LDS~~~~~~~~i~~~Ql~WL~~~L~~ 209 (341)
-.++|+|.. +++|++|.++....
T Consensus 121 ~~LvfiDgd--------D~~Qv~wak~~~~~ 143 (209)
T PRK13738 121 QTLYFINGD--------DPAQVAWMKRQTPP 143 (209)
T ss_pred ceEEEEeCC--------CHHHHHHHHHhhhc
Confidence 357888865 59999999997654
No 225
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=20.09 E-value=2.7e+02 Score=26.98 Aligned_cols=38 Identities=13% Similarity=0.175 Sum_probs=22.6
Q ss_pred HHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEE
Q 039188 38 STVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASV 87 (341)
Q Consensus 38 ~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i 87 (341)
.+.+.+.+||+||.+| - -+.+. .+.......++|+++-
T Consensus 82 ~~~l~~~kPd~vi~~g-~-~~~~~----------~~a~aa~~~gip~v~~ 119 (385)
T TIGR00215 82 VQLAKQAKPDLLVGID-A-PDFNL----------TKELKKKDPGIKIIYY 119 (385)
T ss_pred HHHHHhcCCCEEEEeC-C-CCccH----------HHHHHHhhCCCCEEEE
Confidence 3445567999999999 3 23221 1222223468998854
No 226
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=20.07 E-value=3.6e+02 Score=26.74 Aligned_cols=56 Identities=16% Similarity=0.015 Sum_probs=38.2
Q ss_pred hHHHHHHHHHhhhCCCEEEEeCcccCCCccchhhHHHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 039188 32 NSSRVMSTVLDDEAPGLVIYLGDVITANNIAIANASLYWDQAISPTRARGIPWASVFGNHDD 93 (341)
Q Consensus 32 ~~~~~l~~~l~~~~pD~vv~tGDl~~~~~~~~~~~~~~~~~~~~~l~~~~iP~~~i~GNHD~ 93 (341)
...+.+.+++++.++|-||...-..-... +... ..+.+.+.+.+||+..+=|+.=.
T Consensus 348 ~R~~~l~~li~e~~vDGVI~~~~~~C~~~-----s~e~-~~ik~~l~~~GIP~L~ietD~~d 403 (430)
T TIGR03191 348 IKSEMMLNIARDWNVDGCMLHLNRGCEGL-----SIGI-MENRLAIAKAGIPIMTFEGNMGD 403 (430)
T ss_pred HHHHHHHHHHHHHCCCEEEEcCCCCCccc-----hHhH-HHHHHHHHHcCCCEEEEECCCCC
Confidence 35667777888899999998776543322 1112 13445666789999999888655
Done!