BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039191
         (220 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
           Medullosa (Zucchini)
 pdb|1WS7|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
           Medullosa (Zucchini)
 pdb|1WS7|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
           Medullosa (Zucchini)
 pdb|1WS7|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
           Medullosa (Zucchini)
 pdb|1WS8|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
           Medullosa (zucchini)
 pdb|1WS8|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
           Medullosa (zucchini)
 pdb|1WS8|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
           Medullosa (zucchini)
 pdb|1WS8|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
           Medullosa (zucchini)
          Length = 109

 Score =  133 bits (335), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 59/102 (57%), Positives = 70/102 (68%)

Query: 21  MAATYTVGDDAGWTIQGHIDYSKWAEGKQFHVGDTLVFKYNKAMHDVRQVSHEDFQSCNA 80
           MA  + VGD  GWT     DY+KWA   +FHVGD+L+F YN   H+V QV  E F+SCN+
Sbjct: 1   MATVHKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNS 60

Query: 81  KAPIEEYTTGMDSITLKMAGHHYFLCGIPGHCQVGQKVEINV 122
            +P   YT+G DSI LK  G  YFLCGIPGHCQ+GQKVEI V
Sbjct: 61  SSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKV 102


>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein
          Length = 96

 Score = 94.7 bits (234), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 57/101 (56%), Gaps = 5/101 (4%)

Query: 23  ATYTVGDDAGWTIQGHIDYSKWAEGKQFHVGDTLVFKYNKAMHDVRQVSHEDFQSCNAKA 82
           A Y VG   GWT     +   W +GK+F  GD L+F YN +MH+V  V+   F +CN  A
Sbjct: 1   AVYVVGGSGGWTF----NTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPA 56

Query: 83  PIEEYTTGMDSITLKMAGHHYFLCGIPGHCQVGQKVEINVL 123
             + YT+G D I L   G  YF+C  PGHCQ G K+ +N L
Sbjct: 57  GAKVYTSGRDQIKLP-KGQSYFICNFPGHCQSGMKIAVNAL 96


>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
           Oxidised Form
 pdb|1X9R|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
           Oxidised Form
 pdb|1X9U|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
           Reduced Form
 pdb|1X9U|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
           Reduced Form
          Length = 116

 Score = 80.5 bits (197), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 52/100 (52%), Gaps = 1/100 (1%)

Query: 25  YTVGDDAGWTIQGHID-YSKWAEGKQFHVGDTLVFKYNKAMHDVRQVSHEDFQSCNAKAP 83
           Y VG D  W        Y  WA GK F VGD L F +   MHDV  V+ + F +C  + P
Sbjct: 4   YDVGGDMEWKRPSDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENP 63

Query: 84  IEEYTTGMDSITLKMAGHHYFLCGIPGHCQVGQKVEINVL 123
           I   TT    I L   G  Y++C +  HC+VGQK+ INV+
Sbjct: 64  ISHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINVV 103


>pdb|1F56|A Chain A, Spinach Plantacyanin
 pdb|1F56|B Chain B, Spinach Plantacyanin
 pdb|1F56|C Chain C, Spinach Plantacyanin
          Length = 91

 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 44/77 (57%), Gaps = 1/77 (1%)

Query: 45  AEGKQFHVGDTLVFKYNKAMHDVRQVSHEDFQSCNAKAPIEEYTTGMDSITLKMAGHHYF 104
           A GK F  GD LVFKY K  H+V  V+   + SC+A      Y++G D I L   G +YF
Sbjct: 14  ARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKL-TRGQNYF 72

Query: 105 LCGIPGHCQVGQKVEIN 121
           +C  PGHC  G K+ IN
Sbjct: 73  ICSFPGHCGGGMKIAIN 89


>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0
          Length = 138

 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 61/107 (57%), Gaps = 7/107 (6%)

Query: 22  AATYTVGDDAGWTIQGHID-YSKWAEGKQFHVGDTLVFKYNKAMHDVRQV-SHEDFQSC- 78
           +  + VGD+ GW++    + YS+WA GK F VGD+L F +    H+V ++ + + F +C 
Sbjct: 3   STVHIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACN 62

Query: 79  --NAKAPIEEYTTGMDSITLKMAGHHYFLCGIPGHCQVGQKVEINVL 123
             N+   +E  +  ++   L   G HYF+C +  HC  GQK+ INV+
Sbjct: 63  FVNSDNDVERTSPVIER--LDELGMHYFVCTVGTHCSNGQKLSINVV 107


>pdb|1KOL|A Chain A, Crystal Structure Of Formaldehyde Dehydrogenase
 pdb|1KOL|B Chain B, Crystal Structure Of Formaldehyde Dehydrogenase
          Length = 398

 Score = 29.6 bits (65), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 44  WAEGKQFHVGDTLVFKYNKAM 64
           WA+   FH G T V KYN+A+
Sbjct: 327 WAKSHSFHTGQTPVMKYNRAL 347


>pdb|2K6W|A Chain A, Solution Structures Of Apo Pcua (Trans Conformation Of The
           Peptide Bond Involving The Nitrogen Of P14)
 pdb|2K6Y|A Chain A, Solution Structures Of Apo Form Pcua (Cis Conformation Of
           The Peptide Bond Involving The Nitrogen Of P14)
 pdb|2K6Z|A Chain A, Solution Structures Of Copper Loaded Form Pcua (Trans
           Conformation Of The Peptide Bond Involving The Nitrogen
           Of P14)
 pdb|2K70|A Chain A, Solution Structures Of Copper Loaded Form Pcua (Cis
           Conformation Of The Peptide Bond Involving The Nitrogen
           Of P14)
          Length = 120

 Score = 29.3 bits (64), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 10/31 (32%), Positives = 20/31 (64%)

Query: 93  SITLKMAGHHYFLCGIPGHCQVGQKVEINVL 123
            + LK  G+H+ L G+    + G++VE+++L
Sbjct: 74  RVELKPGGYHFMLLGLKRPLKAGEEVELDLL 104


>pdb|1E30|A Chain A, Crystal Structure Of The Met148gln Mutant Of Rusticyanin
           At 1.5 Angstrom Resolution
 pdb|1E30|B Chain B, Crystal Structure Of The Met148gln Mutant Of Rusticyanin
           At 1.5 Angstrom Resolution
          Length = 155

 Score = 28.9 bits (63), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 99  AGHHYFLCGIPGHCQVGQ 116
           AG +Y++C IPGH   GQ
Sbjct: 131 AGTYYYVCQIPGHAATGQ 148


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.133    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,926,731
Number of Sequences: 62578
Number of extensions: 157478
Number of successful extensions: 453
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 434
Number of HSP's gapped (non-prelim): 15
length of query: 220
length of database: 14,973,337
effective HSP length: 95
effective length of query: 125
effective length of database: 9,028,427
effective search space: 1128553375
effective search space used: 1128553375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)