Query 039191
Match_columns 220
No_of_seqs 149 out of 874
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 07:12:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039191.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039191hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03148 Blue copper-like prot 100.0 2.4E-41 5.2E-46 283.6 14.1 114 8-124 6-119 (167)
2 PF02298 Cu_bind_like: Plastoc 100.0 1.4E-31 3E-36 201.9 3.8 84 33-116 1-85 (85)
3 PRK02710 plastocyanin; Provisi 98.4 3.9E-06 8.5E-11 66.4 10.8 90 19-123 25-119 (119)
4 PF00127 Copper-bind: Copper b 98.3 2.7E-06 5.9E-11 64.9 8.0 75 47-123 18-99 (99)
5 TIGR02656 cyanin_plasto plasto 98.2 1.7E-05 3.7E-10 60.6 9.4 90 24-123 2-99 (99)
6 TIGR03102 halo_cynanin halocya 98.1 2.2E-05 4.7E-10 62.7 9.7 88 21-123 22-115 (115)
7 TIGR02375 pseudoazurin pseudoa 98.0 4.6E-05 1E-09 60.8 8.3 76 46-126 15-90 (116)
8 COG3794 PetE Plastocyanin [Ene 97.9 0.00011 2.3E-09 59.9 9.7 70 46-123 54-127 (128)
9 TIGR03095 rusti_cyanin rusticy 97.4 0.0012 2.7E-08 54.5 8.7 75 49-123 55-148 (148)
10 TIGR02657 amicyanin amicyanin. 97.1 0.0036 7.8E-08 46.3 7.7 69 48-123 13-83 (83)
11 PF06525 SoxE: Sulfocyanin (So 96.6 0.014 2.9E-07 50.9 8.6 79 50-128 90-191 (196)
12 PF00812 Ephrin: Ephrin; Inte 96.5 0.0018 3.8E-08 53.8 2.7 76 48-123 24-144 (145)
13 KOG3858 Ephrin, ligand for Eph 95.1 0.072 1.6E-06 47.5 7.0 80 48-128 45-165 (233)
14 TIGR03094 sulfo_cyanin sulfocy 94.2 0.048 1.1E-06 47.2 3.5 31 97-127 159-189 (195)
15 PF13473 Cupredoxin_1: Cupredo 93.8 0.056 1.2E-06 41.2 2.8 63 47-122 36-104 (104)
16 TIGR03096 nitroso_cyanin nitro 93.0 0.15 3.2E-06 42.0 4.3 57 45-112 60-122 (135)
17 COG4454 Uncharacterized copper 92.5 0.18 4E-06 42.6 4.2 85 38-123 52-157 (158)
18 KOG1924 RhoA GTPase effector D 89.1 1.4 3E-05 45.9 7.5 12 181-192 590-601 (1102)
19 TIGR02695 azurin azurin. Azuri 89.1 4.2 9.1E-05 33.2 9.0 29 92-121 91-124 (125)
20 PF07732 Cu-oxidase_3: Multico 85.9 0.49 1.1E-05 37.3 1.8 78 48-125 28-116 (117)
21 TIGR02376 Cu_nitrite_red nitri 85.5 2 4.3E-05 39.4 5.9 75 48-125 61-147 (311)
22 PRK02888 nitrous-oxide reducta 83.2 3.9 8.4E-05 41.5 7.1 66 48-124 557-634 (635)
23 PLN02604 oxidoreductase 83.0 7.7 0.00017 38.4 9.1 76 47-126 56-146 (566)
24 TIGR02866 CoxB cytochrome c ox 81.6 4.8 0.0001 34.4 6.3 65 49-125 120-193 (201)
25 PF00116 COX2: Cytochrome C ox 77.3 3.7 8.1E-05 32.5 4.0 63 49-123 49-120 (120)
26 COG1622 CyoA Heme/copper-type 71.4 13 0.00027 33.5 6.3 91 27-126 118-214 (247)
27 TIGR03388 ascorbase L-ascorbat 70.3 8.5 0.00018 37.8 5.4 79 48-126 34-123 (541)
28 PLN02354 copper ion binding / 67.3 28 0.00061 34.6 8.3 74 48-125 60-147 (552)
29 PF02839 CBM_5_12: Carbohydrat 63.9 4.3 9.4E-05 25.8 1.3 19 41-59 1-19 (41)
30 PLN02168 copper ion binding / 63.9 34 0.00073 34.1 8.1 79 48-126 59-147 (545)
31 MTH00047 COX2 cytochrome c oxi 63.8 9 0.00019 33.1 3.7 32 93-126 159-193 (194)
32 PLN00044 multi-copper oxidase- 61.8 18 0.00039 36.4 5.9 75 48-126 62-150 (596)
33 PRK10378 inactive ferrous ion 60.7 28 0.00061 33.3 6.7 28 93-125 91-118 (375)
34 TIGR01480 copper_res_A copper- 60.2 24 0.00052 35.4 6.4 85 33-122 488-586 (587)
35 PLN02191 L-ascorbate oxidase 59.6 22 0.00047 35.5 6.0 77 48-124 56-143 (574)
36 cd06555 ASCH_PF0470_like ASC-1 59.4 8 0.00017 30.7 2.4 13 48-60 30-42 (109)
37 PF02362 B3: B3 DNA binding do 57.4 4.5 9.7E-05 29.8 0.6 21 43-63 67-87 (100)
38 PRK11372 lysozyme inhibitor; P 55.7 79 0.0017 24.9 7.5 18 53-70 50-67 (109)
39 PLN02991 oxidoreductase 54.8 69 0.0015 31.9 8.5 74 48-125 61-148 (543)
40 PLN02835 oxidoreductase 52.7 82 0.0018 31.2 8.7 77 48-124 62-148 (539)
41 PF10731 Anophelin: Thrombin i 52.2 13 0.00027 27.0 2.2 32 1-32 1-32 (65)
42 PF12961 DUF3850: Domain of Un 50.3 13 0.00028 27.7 2.0 16 48-63 27-43 (72)
43 PF01456 Mucin: Mucin-like gly 48.6 25 0.00054 28.0 3.7 19 200-218 121-139 (143)
44 TIGR01480 copper_res_A copper- 47.1 48 0.001 33.3 6.1 75 48-124 78-162 (587)
45 PF05382 Amidase_5: Bacterioph 45.0 49 0.0011 27.5 5.0 36 48-83 74-114 (145)
46 PF14326 DUF4384: Domain of un 43.4 1E+02 0.0022 22.4 6.0 17 49-65 2-18 (83)
47 PLN02792 oxidoreductase 43.3 62 0.0013 32.1 6.2 80 47-126 48-137 (536)
48 MTH00140 COX2 cytochrome c oxi 41.2 35 0.00076 29.9 3.7 31 93-125 183-216 (228)
49 PF09792 But2: Ubiquitin 3 bin 40.8 87 0.0019 25.7 5.8 32 93-127 100-131 (143)
50 TIGR03389 laccase laccase, pla 39.9 81 0.0017 31.0 6.4 78 49-127 37-125 (539)
51 TIGR02228 sigpep_I_arch signal 38.5 79 0.0017 26.3 5.3 23 48-70 59-85 (158)
52 PF07731 Cu-oxidase_2: Multico 37.4 42 0.00091 25.9 3.3 32 93-124 105-136 (138)
53 TIGR03511 GldH_lipo gliding mo 34.4 1.3E+02 0.0028 25.2 5.9 28 53-80 41-74 (156)
54 PTZ00047 cytochrome c oxidase 33.5 54 0.0012 27.9 3.5 30 93-124 116-148 (162)
55 MTH00154 COX2 cytochrome c oxi 33.4 54 0.0012 28.9 3.7 30 93-124 183-215 (227)
56 MTH00168 COX2 cytochrome c oxi 32.1 57 0.0012 28.6 3.6 30 93-124 183-215 (225)
57 PF10377 ATG11: Autophagy-rela 31.3 32 0.0007 27.8 1.8 18 48-65 41-58 (129)
58 MTH00139 COX2 cytochrome c oxi 31.2 58 0.0013 28.5 3.5 30 93-124 183-215 (226)
59 MTH00117 COX2 cytochrome c oxi 31.1 66 0.0014 28.3 3.8 30 93-124 183-215 (227)
60 MTH00129 COX2 cytochrome c oxi 29.9 60 0.0013 28.6 3.4 30 93-124 183-215 (230)
61 KOG2315 Predicted translation 29.8 73 0.0016 32.1 4.2 63 42-104 207-275 (566)
62 MTH00098 COX2 cytochrome c oxi 29.5 66 0.0014 28.4 3.6 30 93-124 183-215 (227)
63 TIGR01433 CyoA cytochrome o ub 29.4 63 0.0014 28.5 3.4 30 93-124 182-214 (226)
64 PRK14125 cell division suppres 29.2 44 0.00095 26.0 2.2 9 48-56 39-47 (103)
65 PF07462 MSP1_C: Merozoite sur 29.0 1.9E+02 0.004 29.3 6.8 7 180-186 308-314 (574)
66 KOG1263 Multicopper oxidases [ 28.9 1.8E+02 0.0039 29.3 6.8 78 47-129 60-152 (563)
67 MTH00038 COX2 cytochrome c oxi 28.8 72 0.0016 28.1 3.7 30 93-124 183-215 (229)
68 PF08605 Rad9_Rad53_bind: Fung 27.6 1.1E+02 0.0023 25.1 4.2 47 48-99 58-105 (131)
69 TIGR01432 QOXA cytochrome aa3 26.5 74 0.0016 27.6 3.3 31 93-125 173-206 (217)
70 PRK13791 lysozyme inhibitor; P 26.5 3.3E+02 0.0072 21.7 6.9 38 55-92 55-95 (113)
71 MTH00023 COX2 cytochrome c oxi 26.0 81 0.0018 28.0 3.5 31 93-125 194-227 (240)
72 PF06462 Hyd_WA: Propeller; I 25.8 1.2E+02 0.0027 18.5 3.4 26 92-117 2-27 (32)
73 MTH00008 COX2 cytochrome c oxi 24.7 90 0.0019 27.5 3.5 30 93-124 183-215 (228)
74 COG3627 PhnJ Uncharacterized e 24.6 78 0.0017 28.6 3.1 25 92-116 257-281 (291)
75 PRK09723 putative fimbrial-lik 24.2 4.7E+02 0.01 25.6 8.5 12 20-31 25-36 (421)
76 PF00686 CBM_20: Starch bindin 23.9 76 0.0016 23.4 2.6 40 23-62 17-68 (96)
77 PF11766 Candida_ALS_N: Cell-w 23.6 38 0.00082 30.6 1.0 34 48-81 7-47 (249)
78 smart00495 ChtBD3 Chitin-bindi 23.6 51 0.0011 20.8 1.3 18 41-58 1-18 (41)
79 cd05808 CBM20_alpha_amylase Al 23.0 96 0.0021 22.6 2.9 39 23-61 16-62 (95)
80 cd02859 AMPKbeta_GBD_like AMP- 23.0 2.9E+02 0.0063 19.9 5.5 46 55-104 3-50 (79)
81 PRK10883 FtsI repressor; Provi 22.7 2.3E+02 0.005 27.5 6.2 73 48-126 79-167 (471)
82 PRK10861 signal peptidase I; P 22.7 2.8E+02 0.0061 26.0 6.5 16 48-63 124-139 (324)
83 MTH00076 COX2 cytochrome c oxi 22.6 1E+02 0.0022 27.2 3.4 30 93-124 183-215 (228)
84 MTH00051 COX2 cytochrome c oxi 22.5 96 0.0021 27.4 3.3 30 93-124 187-219 (234)
85 cd05810 CBM20_alpha_MTH Glucan 22.4 84 0.0018 23.7 2.5 39 24-62 18-64 (97)
86 PF11604 CusF_Ec: Copper bindi 22.0 58 0.0012 23.4 1.5 25 42-66 35-59 (70)
87 PF11153 DUF2931: Protein of u 21.3 1.7E+02 0.0036 25.1 4.5 56 5-61 3-60 (216)
88 TIGR02227 sigpep_I_bact signal 21.1 4E+02 0.0086 21.7 6.6 14 48-61 50-63 (163)
No 1
>PLN03148 Blue copper-like protein; Provisional
Probab=100.00 E-value=2.4e-41 Score=283.63 Aligned_cols=114 Identities=33% Similarity=0.658 Sum_probs=104.3
Q ss_pred HHHHHHHHHhhhccceEEEecCCCCceeeCCCCcccccCCCeeeeCCEEEeeecCCCCcEEEeCccCCCCCCCCCCcccc
Q 039191 8 VVSLTIMALFGAAMAATYTVGDDAGWTIQGHIDYSKWAEGKQFHVGDTLVFKYNKAMHDVRQVSHEDFQSCNAKAPIEEY 87 (220)
Q Consensus 8 ~~~l~~~~l~~~a~A~~~~VGg~~GW~~~~~~~Y~~WAs~~tF~VGDtLvF~y~~~~HsV~~V~~~~Y~~C~~s~pi~~~ 87 (220)
++++++++++..+.+++|+|||+.||+. +.||++|+++++|++||+|+|+|++++|||+||++++|++|+.++++..+
T Consensus 6 l~~~~~~~~~~~~~a~~~~VGd~~GW~~--~~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi~~~ 83 (167)
T PLN03148 6 LFCFFALFSASATTATDHIVGANKGWNP--GINYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGNW 83 (167)
T ss_pred HHHHHHHHhhhhccceEEEeCCCCCcCC--CCChhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCccee
Confidence 3333444556788899999999999996 78999999999999999999999999999999999999999999999999
Q ss_pred ccCCcEEEeeccccEEEEcCCCCCCCCCCeEEEEecC
Q 039191 88 TTGMDSITLKMAGHHYFLCGIPGHCQVGQKVEINVLP 124 (220)
Q Consensus 88 s~G~~~v~L~~pG~~YFiCgv~~HC~~GmKl~I~V~~ 124 (220)
++|++.|+|+++|+|||||+ .+||++||||.|+|.+
T Consensus 84 tsG~d~v~L~~~G~~YFIcg-~ghC~~GmKl~I~V~~ 119 (167)
T PLN03148 84 TSGKDFIPLNKAKRYYFICG-NGQCFNGMKVTILVHP 119 (167)
T ss_pred cCCCcEEEecCCccEEEEcC-CCccccCCEEEEEEcC
Confidence 99999999999999999999 5899999999999963
No 2
>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.
Probab=99.97 E-value=1.4e-31 Score=201.86 Aligned_cols=84 Identities=55% Similarity=1.129 Sum_probs=68.7
Q ss_pred ceeeC-CCCcccccCCCeeeeCCEEEeeecCCCCcEEEeCccCCCCCCCCCCccccccCCcEEEeeccccEEEEcCCCCC
Q 039191 33 WTIQG-HIDYSKWAEGKQFHVGDTLVFKYNKAMHDVRQVSHEDFQSCNAKAPIEEYTTGMDSITLKMAGHHYFLCGIPGH 111 (220)
Q Consensus 33 W~~~~-~~~Y~~WAs~~tF~VGDtLvF~y~~~~HsV~~V~~~~Y~~C~~s~pi~~~s~G~~~v~L~~pG~~YFiCgv~~H 111 (220)
|++.. ..+|++||++++|+|||+|+|+|++++|+|+||++++|++|+.++++..+.+|++.|+|+++|++||||++++|
T Consensus 1 W~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~YFic~~~~H 80 (85)
T PF02298_consen 1 WTIPTNASNYTDWASGKTFRVGDTLVFNYDSGQHSVVEVSKADYDSCNSSNPISTYSTGNDTVTLTKPGPHYFICGVPGH 80 (85)
T ss_dssp SSSSSSTTHHHHHHCTS-BETTEEEEEE--TTTB-EEEESHHHHHHT--STTSEEE-SSEEEEEE-SSEEEEEE--STTT
T ss_pred CccCCCccchhHhhcCCcEeCCCEEEEEecCCCCeEEecChhhCccCCCCCceecccCCCEEEEeCCCcCeEEEeCCCCc
Confidence 77622 35899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 039191 112 CQVGQ 116 (220)
Q Consensus 112 C~~Gm 116 (220)
|++||
T Consensus 81 C~~Gq 85 (85)
T PF02298_consen 81 CQKGQ 85 (85)
T ss_dssp TTTT-
T ss_pred ccccC
Confidence 99998
No 3
>PRK02710 plastocyanin; Provisional
Probab=98.41 E-value=3.9e-06 Score=66.44 Aligned_cols=90 Identities=26% Similarity=0.316 Sum_probs=57.7
Q ss_pred hccceEE--EecCCCCc-eeeCCCCcccccCCCeeeeCCEEEeeec-CCCCcEEEeCccCCCCCCCCCCccccccC-CcE
Q 039191 19 AAMAATY--TVGDDAGW-TIQGHIDYSKWAEGKQFHVGDTLVFKYN-KAMHDVRQVSHEDFQSCNAKAPIEEYTTG-MDS 93 (220)
Q Consensus 19 ~a~A~~~--~VGg~~GW-~~~~~~~Y~~WAs~~tF~VGDtLvF~y~-~~~HsV~~V~~~~Y~~C~~s~pi~~~s~G-~~~ 93 (220)
.+.+++| .+|.+.|+ .+.+ +..++++||+|.|... ...|++.--.. +....++ . ....| ...
T Consensus 25 ~a~a~~~~V~~~~~~~~~~F~P--------~~i~v~~Gd~V~~~N~~~~~H~v~~~~~---~~~~~~~-~-~~~pg~t~~ 91 (119)
T PRK02710 25 SASAETVEVKMGSDAGMLAFEP--------STLTIKAGDTVKWVNNKLAPHNAVFDGA---KELSHKD-L-AFAPGESWE 91 (119)
T ss_pred ccccceEEEEEccCCCeeEEeC--------CEEEEcCCCEEEEEECCCCCceEEecCC---ccccccc-c-ccCCCCEEE
Confidence 3445554 45655454 3333 4469999999999864 35699863211 1111111 1 12333 347
Q ss_pred EEeeccccEEEEcCCCCCCCCCCeEEEEec
Q 039191 94 ITLKMAGHHYFLCGIPGHCQVGQKVEINVL 123 (220)
Q Consensus 94 v~L~~pG~~YFiCgv~~HC~~GmKl~I~V~ 123 (220)
++++++|.|.|+|. .|=+.|||..|+|.
T Consensus 92 ~tF~~~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 92 ETFSEAGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred EEecCCEEEEEEcC--CCccCCcEEEEEEC
Confidence 89999999999998 79899999999984
No 4
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.33 E-value=2.7e-06 Score=64.87 Aligned_cols=75 Identities=24% Similarity=0.309 Sum_probs=52.9
Q ss_pred CCeeeeCCEEEeee-cCCCCcEEEeCcc--CCCCCCCCCC---ccccccCC-cEEEeeccccEEEEcCCCCCCCCCCeEE
Q 039191 47 GKQFHVGDTLVFKY-NKAMHDVRQVSHE--DFQSCNAKAP---IEEYTTGM-DSITLKMAGHHYFLCGIPGHCQVGQKVE 119 (220)
Q Consensus 47 ~~tF~VGDtLvF~y-~~~~HsV~~V~~~--~Y~~C~~s~p---i~~~s~G~-~~v~L~~pG~~YFiCgv~~HC~~GmKl~ 119 (220)
..+++.||+|.|.. +...|+|...+.. .-..++.... ......|. ..++++++|.|.|+|. + |...||+-.
T Consensus 18 ~i~V~~G~tV~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~~~G~y~y~C~-P-H~~~GM~G~ 95 (99)
T PF00127_consen 18 EITVKAGDTVTFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFTKPGTYEYYCT-P-HYEAGMVGT 95 (99)
T ss_dssp EEEEETTEEEEEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEESSEEEEEEET-T-TGGTTSEEE
T ss_pred EEEECCCCEEEEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeCCCeEEEEEcC-C-CcccCCEEE
Confidence 46899999999999 4567999988521 1111221111 11223343 3688899999999999 8 999999999
Q ss_pred EEec
Q 039191 120 INVL 123 (220)
Q Consensus 120 I~V~ 123 (220)
|.|.
T Consensus 96 i~V~ 99 (99)
T PF00127_consen 96 IIVE 99 (99)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9984
No 5
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.17 E-value=1.7e-05 Score=60.62 Aligned_cols=90 Identities=21% Similarity=0.209 Sum_probs=57.2
Q ss_pred EEEecCC-CCceeeCCCCcccccCCCeeeeCCEEEeeecC-CCCcEEEeCcc--C---CCCCCCCCCccccccCC-cEEE
Q 039191 24 TYTVGDD-AGWTIQGHIDYSKWAEGKQFHVGDTLVFKYNK-AMHDVRQVSHE--D---FQSCNAKAPIEEYTTGM-DSIT 95 (220)
Q Consensus 24 ~~~VGg~-~GW~~~~~~~Y~~WAs~~tF~VGDtLvF~y~~-~~HsV~~V~~~--~---Y~~C~~s~pi~~~s~G~-~~v~ 95 (220)
++.||.+ .+-.+.| +..+++.||+|+|+.+. ..|+|+..+.. + .......+-......|. ..++
T Consensus 2 ~v~~g~~~g~~~F~P--------~~i~v~~G~~V~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~~~t 73 (99)
T TIGR02656 2 TVKMGADKGALVFEP--------AKISIAAGDTVEWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESYEVT 73 (99)
T ss_pred EEEEecCCCceeEeC--------CEEEECCCCEEEEEECCCCCceEEECCCCCccchhhhcccccccccccCCCCEEEEE
Confidence 4566753 3455544 34699999999999653 56999864321 0 00011100001122233 4688
Q ss_pred eeccccEEEEcCCCCCCCCCCeEEEEec
Q 039191 96 LKMAGHHYFLCGIPGHCQVGQKVEINVL 123 (220)
Q Consensus 96 L~~pG~~YFiCgv~~HC~~GmKl~I~V~ 123 (220)
++.+|.|-|+|. +|++.||+..|.|.
T Consensus 74 F~~~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 74 FSTPGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred eCCCEEEEEEcC--CccccCCEEEEEEC
Confidence 899999999999 89999999999884
No 6
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=98.15 E-value=2.2e-05 Score=62.65 Aligned_cols=88 Identities=20% Similarity=0.305 Sum_probs=60.2
Q ss_pred cceEEEec--CC-CCceeeCCCCcccccCCCeeeeCCEEEeeecC--CCCcEEEeCccCCCCCCCCCCccccccC-CcEE
Q 039191 21 MAATYTVG--DD-AGWTIQGHIDYSKWAEGKQFHVGDTLVFKYNK--AMHDVRQVSHEDFQSCNAKAPIEEYTTG-MDSI 94 (220)
Q Consensus 21 ~A~~~~VG--g~-~GW~~~~~~~Y~~WAs~~tF~VGDtLvF~y~~--~~HsV~~V~~~~Y~~C~~s~pi~~~s~G-~~~v 94 (220)
...+..|| ++ .+..+.| +..++++||+|+|+++. ..|+|.-.....|+. ... ....| ...+
T Consensus 22 ~~~~v~~G~~~~~g~~~F~P--------~~ltV~~GdTVtw~~~~d~~~HnV~s~~~~~f~s----~~~-~~~~G~t~s~ 88 (115)
T TIGR03102 22 DEVTVDVGAEANGGGFAFDP--------PAIRVDPGTTVVWEWTGEGGGHNVVSDGDGDLDE----SER-VSEEGTTYEH 88 (115)
T ss_pred ceEEEEecccCCCCceeEeC--------CEEEECCCCEEEEEECCCCCCEEEEECCCCCccc----ccc-ccCCCCEEEE
Confidence 34567888 32 2355544 34699999999999864 569998543334441 111 12233 3579
Q ss_pred EeeccccEEEEcCCCCCCCCCCeEEEEec
Q 039191 95 TLKMAGHHYFLCGIPGHCQVGQKVEINVL 123 (220)
Q Consensus 95 ~L~~pG~~YFiCgv~~HC~~GmKl~I~V~ 123 (220)
+|+++|.|-|+|.. |=..|||-.|.|.
T Consensus 89 Tf~~~G~Y~Y~C~p--H~~~gM~G~I~V~ 115 (115)
T TIGR03102 89 TFEEPGIYLYVCVP--HEALGMKGAVVVE 115 (115)
T ss_pred EecCCcEEEEEccC--CCCCCCEEEEEEC
Confidence 99999999999994 7667999999983
No 7
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.96 E-value=4.6e-05 Score=60.84 Aligned_cols=76 Identities=17% Similarity=0.123 Sum_probs=53.9
Q ss_pred CCCeeeeCCEEEeeecCCCCcEEEeCccCCCCCCCCCCccccccCCcEEEeeccccEEEEcCCCCCCCCCCeEEEEecCC
Q 039191 46 EGKQFHVGDTLVFKYNKAMHDVRQVSHEDFQSCNAKAPIEEYTTGMDSITLKMAGHHYFLCGIPGHCQVGQKVEINVLPG 125 (220)
Q Consensus 46 s~~tF~VGDtLvF~y~~~~HsV~~V~~~~Y~~C~~s~pi~~~s~G~~~v~L~~pG~~YFiCgv~~HC~~GmKl~I~V~~~ 125 (220)
...++++||+|+|.+....|+|..+.....+ ..+....-.+....++++++|.|-|+|. .|=..||+-.|+|...
T Consensus 15 ~~v~V~~GdTV~f~n~d~~Hnv~~~~~~~p~---g~~~~~s~~g~~~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~ 89 (116)
T TIGR02375 15 AYIRAAPGDTVTFVPTDKGHNVETIKGMIPE---GAEAFKSKINEEYTVTVTEEGVYGVKCT--PHYGMGMVALIQVGDP 89 (116)
T ss_pred CEEEECCCCEEEEEECCCCeeEEEccCCCcC---CcccccCCCCCEEEEEeCCCEEEEEEcC--CCccCCCEEEEEECCC
Confidence 3468999999999998777999864221111 0111111112335789999999999999 6999999999999875
Q ss_pred C
Q 039191 126 A 126 (220)
Q Consensus 126 ~ 126 (220)
.
T Consensus 90 ~ 90 (116)
T TIGR02375 90 P 90 (116)
T ss_pred C
Confidence 4
No 8
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.91 E-value=0.00011 Score=59.92 Aligned_cols=70 Identities=23% Similarity=0.270 Sum_probs=52.6
Q ss_pred CCCeeeeCCEEEeeecCC-CCcEEEeCccCCCCCCCCCCccccccC---CcEEEeeccccEEEEcCCCCCCCCCCeEEEE
Q 039191 46 EGKQFHVGDTLVFKYNKA-MHDVRQVSHEDFQSCNAKAPIEEYTTG---MDSITLKMAGHHYFLCGIPGHCQVGQKVEIN 121 (220)
Q Consensus 46 s~~tF~VGDtLvF~y~~~-~HsV~~V~~~~Y~~C~~s~pi~~~s~G---~~~v~L~~pG~~YFiCgv~~HC~~GmKl~I~ 121 (220)
+..++++||+|.|.+... .|||.-+...+ . .-...+..+ ..+.+++++|.|.|+|.- |=..|||-.|.
T Consensus 54 A~v~v~pGDTVtw~~~d~~~Hnv~~~~~~~-----~-~g~~~~~~~~~~s~~~Tfe~~G~Y~Y~C~P--H~~~gM~G~Iv 125 (128)
T COG3794 54 AEVTVKPGDTVTWVNTDSVGHNVTAVGGMD-----P-EGSGTLKAGINESFTHTFETPGEYTYYCTP--HPGMGMKGKIV 125 (128)
T ss_pred cEEEECCCCEEEEEECCCCCceEEEeCCCC-----c-ccccccccCCCcceEEEecccceEEEEecc--CCCCCcEEEEE
Confidence 457999999999999987 89999874441 1 111222222 246899999999999985 88889999999
Q ss_pred ec
Q 039191 122 VL 123 (220)
Q Consensus 122 V~ 123 (220)
|.
T Consensus 126 V~ 127 (128)
T COG3794 126 VG 127 (128)
T ss_pred eC
Confidence 85
No 9
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=97.37 E-value=0.0012 Score=54.53 Aligned_cols=75 Identities=20% Similarity=0.255 Sum_probs=48.9
Q ss_pred eeeeCCEEEeeecCC----CCcEEEeCcc-CC------------CCCCCCCCccccc--cCCcEEEeeccccEEEEcCCC
Q 039191 49 QFHVGDTLVFKYNKA----MHDVRQVSHE-DF------------QSCNAKAPIEEYT--TGMDSITLKMAGHHYFLCGIP 109 (220)
Q Consensus 49 tF~VGDtLvF~y~~~----~HsV~~V~~~-~Y------------~~C~~s~pi~~~s--~G~~~v~L~~pG~~YFiCgv~ 109 (220)
+++.||+|+|...+. .|.....++. .+ ..|....+.+.-. ....+++++++|+|||.|.++
T Consensus 55 ~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~~~tf~f~~aGtywyhC~~p 134 (148)
T TIGR03095 55 VIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYTDFTYHFSTAGTYWYLCTYP 134 (148)
T ss_pred EEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccceeEEEEECCCCeEEEEEcCCh
Confidence 678999999998653 5766654321 11 0122211111000 023367788999999999999
Q ss_pred CCCCCCCeEEEEec
Q 039191 110 GHCQVGQKVEINVL 123 (220)
Q Consensus 110 ~HC~~GmKl~I~V~ 123 (220)
+|=+.||+-.|.|.
T Consensus 135 gH~~~GM~G~iiV~ 148 (148)
T TIGR03095 135 GHAENGMYGKIVVK 148 (148)
T ss_pred hHHHCCCEEEEEEC
Confidence 99999999988773
No 10
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.07 E-value=0.0036 Score=46.28 Aligned_cols=69 Identities=23% Similarity=0.222 Sum_probs=46.6
Q ss_pred CeeeeCCEEEeeecCC-CCcEEEeCccCCCCCCCCCCccccccCC-cEEEeeccccEEEEcCCCCCCCCCCeEEEEec
Q 039191 48 KQFHVGDTLVFKYNKA-MHDVRQVSHEDFQSCNAKAPIEEYTTGM-DSITLKMAGHHYFLCGIPGHCQVGQKVEINVL 123 (220)
Q Consensus 48 ~tF~VGDtLvF~y~~~-~HsV~~V~~~~Y~~C~~s~pi~~~s~G~-~~v~L~~pG~~YFiCgv~~HC~~GmKl~I~V~ 123 (220)
.++++||+|.|+.+.. .|||...+..+ ..=+.... ....|. ..++++++|.|-|.|.... .||-.|.|.
T Consensus 13 i~v~~GdtVt~~N~d~~~Hnv~~~~g~~-~~~~~~~~--~~~~g~~~~~tf~~~G~y~y~C~~Hp----~M~G~v~V~ 83 (83)
T TIGR02657 13 LHVKVGDTVTWINREAMPHNVHFVAGVL-GEAALKGP--MMKKEQAYSLTFTEAGTYDYHCTPHP----FMRGKVVVE 83 (83)
T ss_pred EEECCCCEEEEEECCCCCccEEecCCCC-cccccccc--ccCCCCEEEEECCCCEEEEEEcCCCC----CCeEEEEEC
Confidence 5889999999998754 69998653221 11011111 122333 4789999999999999853 599999873
No 11
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=96.59 E-value=0.014 Score=50.89 Aligned_cols=79 Identities=19% Similarity=0.305 Sum_probs=50.1
Q ss_pred eeeCCEEEeeecCC---CCcEEEe-CccCCCCCCCC---CCcc-------------ccccCCcE--EEee-ccccEEEEc
Q 039191 50 FHVGDTLVFKYNKA---MHDVRQV-SHEDFQSCNAK---APIE-------------EYTTGMDS--ITLK-MAGHHYFLC 106 (220)
Q Consensus 50 F~VGDtLvF~y~~~---~HsV~~V-~~~~Y~~C~~s---~pi~-------------~~s~G~~~--v~L~-~pG~~YFiC 106 (220)
+-.|-++.|+|.+. .|+++.| +...+..|..- +.+. ....|... +..+ .+|.||++|
T Consensus 90 VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l~aG~YwlvC 169 (196)
T PF06525_consen 90 VPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDLPAGYYWLVC 169 (196)
T ss_pred EcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccCCCceEEEEc
Confidence 34688888888653 6999888 33333333211 1111 01123322 2223 579999999
Q ss_pred CCCCCCCCCCeEEEEecCCCCC
Q 039191 107 GIPGHCQVGQKVEINVLPGASS 128 (220)
Q Consensus 107 gv~~HC~~GmKl~I~V~~~~s~ 128 (220)
+++||=+.||-..+.|...-..
T Consensus 170 ~ipGHA~sGMw~~LiVs~~vt~ 191 (196)
T PF06525_consen 170 GIPGHAESGMWGVLIVSSNVTV 191 (196)
T ss_pred cCCChhhcCCEEEEEEecCccc
Confidence 9999999999999999876543
No 12
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO). These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....
Probab=96.54 E-value=0.0018 Score=53.81 Aligned_cols=76 Identities=25% Similarity=0.391 Sum_probs=46.3
Q ss_pred CeeeeCCEEEeeecCC-----------CCcEEEeCccCCCCCCCCC-Ccccc--c-----cCCcEEEee-----------
Q 039191 48 KQFHVGDTLVFKYNKA-----------MHDVRQVSHEDFQSCNAKA-PIEEY--T-----TGMDSITLK----------- 97 (220)
Q Consensus 48 ~tF~VGDtLvF~y~~~-----------~HsV~~V~~~~Y~~C~~s~-pi~~~--s-----~G~~~v~L~----------- 97 (220)
..+++||.|.+--... ...+++|++++|+.|+... ....+ + .|...|++.
T Consensus 24 i~V~i~D~ldIiCP~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~~~~kft~kFq~fSP~p~G~ 103 (145)
T PF00812_consen 24 IEVRIGDYLDIICPHYEPGGPPPEEYEYYILYMVSEEGYESCSLTSRPRLLWECDRPEAPHGPKKFTIKFQEFSPFPLGL 103 (145)
T ss_dssp EEE-TTEEEEEEE--SSSSSSSCSSS-BEEEEEE-HHHHHHTBSSTSEEEEEEE-TTTSTTSSEEEEEESSSS-SSTTSS
T ss_pred EEecCCCEEEEECCCCCCCCCCCCCceEEEEEEEcHHHhcccCCCCCCcEEEEeCCCCCCCCCcEEEEEEEECCCCCCCe
Confidence 4788999999975432 4467899999999999642 22111 1 233344431
Q ss_pred --ccc-cEEEEcCC-----------CCCCCC-CCeEEEEec
Q 039191 98 --MAG-HHYFLCGI-----------PGHCQV-GQKVEINVL 123 (220)
Q Consensus 98 --~pG-~~YFiCgv-----------~~HC~~-GmKl~I~V~ 123 (220)
++| .||||+.- +|-|.. .|||.|.|.
T Consensus 104 EF~pG~~YY~ISts~g~~~g~~~~~gG~C~~~~mkl~~~v~ 144 (145)
T PF00812_consen 104 EFQPGHDYYYISTSTGTQEGLDNRRGGLCLSHNMKLRIKVG 144 (145)
T ss_dssp S--TTEEEEEEEEESSSSTTTTSSBSCHHHEEEEEEEEECT
T ss_pred eecCCCeEEEEEccCCCCCCcccccccccCcCeeEEEEecC
Confidence 356 58899842 234854 799999885
No 13
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=95.15 E-value=0.072 Score=47.54 Aligned_cols=80 Identities=19% Similarity=0.319 Sum_probs=48.4
Q ss_pred CeeeeCCEEEeeec---CC------CCcEEEeCccCCCCCCC-CCCcccc--ccCC--c--------------EEEeecc
Q 039191 48 KQFHVGDTLVFKYN---KA------MHDVRQVSHEDFQSCNA-KAPIEEY--TTGM--D--------------SITLKMA 99 (220)
Q Consensus 48 ~tF~VGDtLvF~y~---~~------~HsV~~V~~~~Y~~C~~-s~pi~~~--s~G~--~--------------~v~L~~p 99 (220)
.-+++||.|-+--. .+ +.-|++|++++|+.|+. +.+.... +... . .+.+ ++
T Consensus 45 I~v~igD~ldIiCP~~e~~~~~~~E~yilYmV~~~~y~~C~~~s~~~~~~~C~rP~~~~kfsikFq~ftP~p~G~EF-~p 123 (233)
T KOG3858|consen 45 IYVQIGDYLDIICPHYEEGGPEGYEYYILYMVSEEEYDLCELRSKPFKRWECNRPSTPLKFSIKFQRFTPFPLGFEF-QP 123 (233)
T ss_pred EEeccCCEEEEECCCCCCCCCCcceEEEEEEeChHHhhhhhccCCCcEEEEecCCCcchhhhhhheecCCCCCCccc-cC
Confidence 46778999988633 22 23458899999999997 3332211 1111 0 1122 35
Q ss_pred c-cEEEEcC-----------CCCCCCC-CCeEEEEecCCCCC
Q 039191 100 G-HHYFLCG-----------IPGHCQV-GQKVEINVLPGASS 128 (220)
Q Consensus 100 G-~~YFiCg-----------v~~HC~~-GmKl~I~V~~~~s~ 128 (220)
| +||||+. .++-|.. .||+.++|......
T Consensus 124 G~~YY~IStStg~~~g~~~~~ggvc~~~~mk~~~~V~~~~~~ 165 (233)
T KOG3858|consen 124 GHTYYYISTSTGDAEGLCNLRGGVCVTRNMKLLMKVGQSPRS 165 (233)
T ss_pred CCeEEEEeCCCccccccchhhCCEeccCCceEEEEecccCCC
Confidence 6 5888885 2345644 69999999876543
No 14
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=94.22 E-value=0.048 Score=47.24 Aligned_cols=31 Identities=29% Similarity=0.584 Sum_probs=27.3
Q ss_pred eccccEEEEcCCCCCCCCCCeEEEEecCCCC
Q 039191 97 KMAGHHYFLCGIPGHCQVGQKVEINVLPGAS 127 (220)
Q Consensus 97 ~~pG~~YFiCgv~~HC~~GmKl~I~V~~~~s 127 (220)
.++|.||++|+++||-+.||-..+.|.....
T Consensus 159 ~~~G~YwlvCgipGHAesGMw~~lIVSs~vt 189 (195)
T TIGR03094 159 TSAGKYWLVCGITGHAESGMWAVVIVSSNVT 189 (195)
T ss_pred CCCeeEEEEcccCChhhcCcEEEEEEecCcc
Confidence 3789999999999999999999988876654
No 15
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=93.81 E-value=0.056 Score=41.16 Aligned_cols=63 Identities=14% Similarity=0.227 Sum_probs=29.2
Q ss_pred CCeeeeCCEEEeeecC---CCCcEEEeCccCCCCCCCCCCccccccCC-cEEEe--eccccEEEEcCCCCCCCCCCeEEE
Q 039191 47 GKQFHVGDTLVFKYNK---AMHDVRQVSHEDFQSCNAKAPIEEYTTGM-DSITL--KMAGHHYFLCGIPGHCQVGQKVEI 120 (220)
Q Consensus 47 ~~tF~VGDtLvF~y~~---~~HsV~~V~~~~Y~~C~~s~pi~~~s~G~-~~v~L--~~pG~~YFiCgv~~HC~~GmKl~I 120 (220)
..+++.|+.+.+.+.+ ..|++..-+ .+-......|. .++++ .++|.|=|+|++..+ ||-.|
T Consensus 36 ~i~v~~G~~v~l~~~N~~~~~h~~~i~~---------~~~~~~l~~g~~~~~~f~~~~~G~y~~~C~~~~~----m~G~l 102 (104)
T PF13473_consen 36 TITVKAGQPVTLTFTNNDSRPHEFVIPD---------LGISKVLPPGETATVTFTPLKPGEYEFYCTMHPN----MKGTL 102 (104)
T ss_dssp EEEEETTCEEEEEEEE-SSS-EEEEEGG---------GTEEEEE-TT-EEEEEEEE-S-EEEEEB-SSS-T----TB---
T ss_pred EEEEcCCCeEEEEEEECCCCcEEEEECC---------CceEEEECCCCEEEEEEcCCCCEEEEEEcCCCCc----ceecc
Confidence 4699999955555543 335553321 11112233343 34555 899999999997653 66555
Q ss_pred Ee
Q 039191 121 NV 122 (220)
Q Consensus 121 ~V 122 (220)
.|
T Consensus 103 iV 104 (104)
T PF13473_consen 103 IV 104 (104)
T ss_dssp --
T ss_pred cC
Confidence 44
No 16
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=93.04 E-value=0.15 Score=42.04 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=35.3
Q ss_pred cCCCeeeeCCEEEeeecCC---CCcEEEeCccCCCCCCCCCCccccccCCc---EEEeeccccEEEEcCCCCCC
Q 039191 45 AEGKQFHVGDTLVFKYNKA---MHDVRQVSHEDFQSCNAKAPIEEYTTGMD---SITLKMAGHHYFLCGIPGHC 112 (220)
Q Consensus 45 As~~tF~VGDtLvF~y~~~---~HsV~~V~~~~Y~~C~~s~pi~~~s~G~~---~v~L~~pG~~YFiCgv~~HC 112 (220)
-+..+++.||.+.+.+.+. .|++.. .+|. .. ....-|.+ +++.+++|.|.|.|+. ||
T Consensus 60 P~~I~VkaGD~Vtl~vtN~d~~~H~f~i---~~~g---is---~~I~pGet~TitF~adKpG~Y~y~C~~--HP 122 (135)
T TIGR03096 60 PEALVVKKGTPVKVTVENKSPISEGFSI---DAYG---IS---EVIKAGETKTISFKADKAGAFTIWCQL--HP 122 (135)
T ss_pred CCEEEECCCCEEEEEEEeCCCCccceEE---CCCC---cc---eEECCCCeEEEEEECCCCEEEEEeCCC--CC
Confidence 3446889999998887643 244332 2232 11 12233333 4677999999999997 55
No 17
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=92.48 E-value=0.18 Score=42.55 Aligned_cols=85 Identities=22% Similarity=0.316 Sum_probs=52.1
Q ss_pred CCCccc---ccCCCeeeeCCEEEeeecCCCCcEEEe--CccCCC-----C--------CCCCCCccccc---cCCcEEEe
Q 039191 38 HIDYSK---WAEGKQFHVGDTLVFKYNKAMHDVRQV--SHEDFQ-----S--------CNAKAPIEEYT---TGMDSITL 96 (220)
Q Consensus 38 ~~~Y~~---WAs~~tF~VGDtLvF~y~~~~HsV~~V--~~~~Y~-----~--------C~~s~pi~~~s---~G~~~v~L 96 (220)
..+|.+ =.++..++-|-+++|.-.....-+.++ .+++.. . -+..+.+ ++. +|.-++.+
T Consensus 52 ~~~lg~m~f~p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~~Dme~d~~~~v-~L~PG~s~elvv~f 130 (158)
T COG4454 52 GTDLGKMSFKPSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILADDMEHDDPNTV-TLAPGKSGELVVVF 130 (158)
T ss_pred cccccccccCCCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhCCccccCCccee-EeCCCCcEEEEEEe
Confidence 455554 234457889999988766542233222 111110 0 0111111 122 22336888
Q ss_pred eccccEEEEcCCCCCCCCCCeEEEEec
Q 039191 97 KMAGHHYFLCGIPGHCQVGQKVEINVL 123 (220)
Q Consensus 97 ~~pG~~YFiCgv~~HC~~GmKl~I~V~ 123 (220)
+++|.|=|+|.+++|-+.||.-.|+|.
T Consensus 131 t~~g~ye~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 131 TGAGKYEFACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred cCCccEEEEecCCCcccCCcEEEEEeC
Confidence 899999999999999999999999986
No 18
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=89.13 E-value=1.4 Score=45.90 Aligned_cols=12 Identities=33% Similarity=0.645 Sum_probs=4.6
Q ss_pred CCCCCCCCCCCC
Q 039191 181 GEGSSSSTPPPS 192 (220)
Q Consensus 181 ~~~~~~~~~~~~ 192 (220)
|--+--.+||++
T Consensus 590 g~~Gg~ppPP~~ 601 (1102)
T KOG1924|consen 590 GFLGGPPPPPPP 601 (1102)
T ss_pred CCCCCCCCCCCC
Confidence 433333333433
No 19
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=89.09 E-value=4.2 Score=33.22 Aligned_cols=29 Identities=31% Similarity=0.619 Sum_probs=22.0
Q ss_pred cEEEee----cccc-EEEEcCCCCCCCCCCeEEEE
Q 039191 92 DSITLK----MAGH-HYFLCGIPGHCQVGQKVEIN 121 (220)
Q Consensus 92 ~~v~L~----~pG~-~YFiCgv~~HC~~GmKl~I~ 121 (220)
++|+++ ++|. |=|+|+++||=. .||-.++
T Consensus 91 ~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 91 TSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred EEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 457776 3675 779999999986 6887664
No 20
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=85.90 E-value=0.49 Score=37.31 Aligned_cols=78 Identities=17% Similarity=0.153 Sum_probs=46.2
Q ss_pred CeeeeCCEEEeeecCC---CCcEEE----eCcc-CCCC--CCCCCCccccccCCcEEEeec-cccEEEEcCCCCCCCCCC
Q 039191 48 KQFHVGDTLVFKYNKA---MHDVRQ----VSHE-DFQS--CNAKAPIEEYTTGMDSITLKM-AGHHYFLCGIPGHCQVGQ 116 (220)
Q Consensus 48 ~tF~VGDtLvF~y~~~---~HsV~~----V~~~-~Y~~--C~~s~pi~~~s~G~~~v~L~~-pG~~YFiCgv~~HC~~Gm 116 (220)
.+++.||+|.+++.+. .++|.- +... ..|. .....++....+-...|++++ +|+|||-|...+|=..||
T Consensus 28 I~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~~GL 107 (117)
T PF07732_consen 28 IRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYWYHSHVHGQQVMGL 107 (117)
T ss_dssp EEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEEEEECSTTHHHTTE
T ss_pred EEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecceeeeEeeeccccceeEeeCCCchhcCcC
Confidence 5789999999998753 344422 1111 0110 111112222122224688888 899999999887544899
Q ss_pred eEEEEecCC
Q 039191 117 KVEINVLPG 125 (220)
Q Consensus 117 Kl~I~V~~~ 125 (220)
--.|.|...
T Consensus 108 ~G~~iV~~~ 116 (117)
T PF07732_consen 108 YGAIIVEPP 116 (117)
T ss_dssp EEEEEEE-T
T ss_pred EEEEEEcCC
Confidence 888888643
No 21
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=85.54 E-value=2 Score=39.36 Aligned_cols=75 Identities=21% Similarity=0.272 Sum_probs=47.1
Q ss_pred CeeeeCCEEEeeecCC-----CCcEEEeCccCCCCCCCCCCccccccCC---cEEEeeccccEEEEcCC----CCCCCCC
Q 039191 48 KQFHVGDTLVFKYNKA-----MHDVRQVSHEDFQSCNAKAPIEEYTTGM---DSITLKMAGHHYFLCGI----PGHCQVG 115 (220)
Q Consensus 48 ~tF~VGDtLvF~y~~~-----~HsV~~V~~~~Y~~C~~s~pi~~~s~G~---~~v~L~~pG~~YFiCgv----~~HC~~G 115 (220)
.+++.||+|+.++.+. .|++..=-.... +..........|. ..|+++++|+|||-|.. ..|=..|
T Consensus 61 irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~~~---dg~~~~~~I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~~G 137 (311)
T TIGR02376 61 IRVHEGDYVELTLINPPTNTMPHNVDFHAATGA---LGGAALTQVNPGETATLRFKATRPGAFVYHCAPPGMVPWHVVSG 137 (311)
T ss_pred EEEECCCEEEEEEEeCCCCCCceeeeecCCCcc---CCCCcceeECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhhcC
Confidence 4789999999888654 355543100000 0101111123333 35788889999999995 3477889
Q ss_pred CeEEEEecCC
Q 039191 116 QKVEINVLPG 125 (220)
Q Consensus 116 mKl~I~V~~~ 125 (220)
|.-.|.|...
T Consensus 138 l~G~liV~~~ 147 (311)
T TIGR02376 138 MNGAIMVLPR 147 (311)
T ss_pred cceEEEeecc
Confidence 9999998754
No 22
>PRK02888 nitrous-oxide reductase; Validated
Probab=83.18 E-value=3.9 Score=41.50 Aligned_cols=66 Identities=15% Similarity=0.229 Sum_probs=42.1
Q ss_pred CeeeeCCEEEeeecCC------CCcEEEeCccCCCCCCCCCCccccccCC---cEEEeeccccEEEEcCCCCCCC---CC
Q 039191 48 KQFHVGDTLVFKYNKA------MHDVRQVSHEDFQSCNAKAPIEEYTTGM---DSITLKMAGHHYFLCGIPGHCQ---VG 115 (220)
Q Consensus 48 ~tF~VGDtLvF~y~~~------~HsV~~V~~~~Y~~C~~s~pi~~~s~G~---~~v~L~~pG~~YFiCgv~~HC~---~G 115 (220)
.+++.||.+.|...+- .|....- .|. ......-|. -+|+.++||.|||+|+.- |- .+
T Consensus 557 i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip---~~n------I~~dv~PG~t~svtF~adkPGvy~~~Ctef--CGa~H~~ 625 (635)
T PRK02888 557 FTVKQGDEVTVIVTNLDKVEDLTHGFAIP---NYG------VNMEVAPQATASVTFTADKPGVYWYYCTWF--CHALHME 625 (635)
T ss_pred EEecCCCEEEEEEEeCCcccccccceeec---ccC------ccEEEcCCceEEEEEEcCCCEEEEEECCcc--cccCccc
Confidence 5899999999998762 2333321 121 111112232 257788999999999973 43 36
Q ss_pred CeEEEEecC
Q 039191 116 QKVEINVLP 124 (220)
Q Consensus 116 mKl~I~V~~ 124 (220)
|+-.|.|.+
T Consensus 626 M~G~~iVep 634 (635)
T PRK02888 626 MRGRMLVEP 634 (635)
T ss_pred ceEEEEEEe
Confidence 888888864
No 23
>PLN02604 oxidoreductase
Probab=83.03 E-value=7.7 Score=38.44 Aligned_cols=76 Identities=18% Similarity=0.203 Sum_probs=48.3
Q ss_pred CCeeeeCCEEEeeecCCC----CcE-----EEeCccCCC------CCCCCCCccccccCCcEEEeeccccEEEEcCCCCC
Q 039191 47 GKQFHVGDTLVFKYNKAM----HDV-----RQVSHEDFQ------SCNAKAPIEEYTTGMDSITLKMAGHHYFLCGIPGH 111 (220)
Q Consensus 47 ~~tF~VGDtLvF~y~~~~----HsV-----~~V~~~~Y~------~C~~s~pi~~~s~G~~~v~L~~pG~~YFiCgv~~H 111 (220)
..+++.||+|+++..+.. |++ .+.....+| .| ++.-..+=...|+++++|++||=|....|
T Consensus 56 ~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG~~~~tq~----~i~pg~s~~y~f~~~~~Gt~wyH~H~~~q 131 (566)
T PLN02604 56 TILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGTEGVTQC----PILPGETFTYEFVVDRPGTYLYHAHYGMQ 131 (566)
T ss_pred cEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccCCCccccC----ccCCCCeEEEEEEcCCCEEEEEeeCcHHH
Confidence 468999999999876541 233 221111011 12 12111111236788899999999999999
Q ss_pred CCCCCeEEEEecCCC
Q 039191 112 CQVGQKVEINVLPGA 126 (220)
Q Consensus 112 C~~GmKl~I~V~~~~ 126 (220)
-..||.-.|.|....
T Consensus 132 ~~~Gl~G~liV~~~~ 146 (566)
T PLN02604 132 REAGLYGSIRVSLPR 146 (566)
T ss_pred HhCCCeEEEEEEecC
Confidence 999999998887543
No 24
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=81.58 E-value=4.8 Score=34.44 Aligned_cols=65 Identities=12% Similarity=0.088 Sum_probs=40.6
Q ss_pred eeeeCCEEEeeecCC--CCcEEEeCccCCCCCCCCCCcccc-ccCC---cEEEeeccccEEEEcCCCCCCC---CCCeEE
Q 039191 49 QFHVGDTLVFKYNKA--MHDVRQVSHEDFQSCNAKAPIEEY-TTGM---DSITLKMAGHHYFLCGIPGHCQ---VGQKVE 119 (220)
Q Consensus 49 tF~VGDtLvF~y~~~--~HsV~~V~~~~Y~~C~~s~pi~~~-s~G~---~~v~L~~pG~~YFiCgv~~HC~---~GmKl~ 119 (220)
.+.+|+.++|+-++. .|+...-+.. ++.. --|. ..++.+++|.|++.|.. .|. ..|++.
T Consensus 120 ~vp~g~~v~~~~ts~DV~Hsf~ip~~~----------~k~da~PG~~~~~~~~~~~~G~y~~~c~e--~cG~~h~~M~~~ 187 (201)
T TIGR02866 120 VVPAGTPVRLQVTSKDVIHSFWVPELG----------GKIDAIPGQYNALWFNADEPGVYYGYCAE--LCGAGHSLMLFK 187 (201)
T ss_pred EEEcCCEEEEEEEeCchhhcccccccC----------ceEEecCCcEEEEEEEeCCCEEEEEEehh--hCCcCccCCeEE
Confidence 577899999987763 2333221111 1111 1222 25788999999999997 454 459999
Q ss_pred EEecCC
Q 039191 120 INVLPG 125 (220)
Q Consensus 120 I~V~~~ 125 (220)
|.|...
T Consensus 188 v~v~~~ 193 (201)
T TIGR02866 188 VVVVER 193 (201)
T ss_pred EEEECH
Confidence 998753
No 25
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=77.28 E-value=3.7 Score=32.54 Aligned_cols=63 Identities=19% Similarity=0.310 Sum_probs=38.2
Q ss_pred eeeeCCEEEeeecCC--CCcEEEeCccCCCCCCCCCCccc-cccCC---cEEEeeccccEEEEcCCCCCCCCC---CeEE
Q 039191 49 QFHVGDTLVFKYNKA--MHDVRQVSHEDFQSCNAKAPIEE-YTTGM---DSITLKMAGHHYFLCGIPGHCQVG---QKVE 119 (220)
Q Consensus 49 tF~VGDtLvF~y~~~--~HsV~~V~~~~Y~~C~~s~pi~~-~s~G~---~~v~L~~pG~~YFiCgv~~HC~~G---mKl~ 119 (220)
.+..|+.+.|+-.+. .|+...- ++. ++. .-.|. ..++.+++|.|++.|.. .|-.| |+..
T Consensus 49 ~lp~g~~v~~~ltS~DViHsf~ip---~~~-------~k~d~~PG~~~~~~~~~~~~G~y~~~C~e--~CG~gH~~M~~~ 116 (120)
T PF00116_consen 49 VLPAGQPVRFHLTSEDVIHSFWIP---ELG-------IKMDAIPGRTNSVTFTPDKPGTYYGQCAE--YCGAGHSFMPGK 116 (120)
T ss_dssp EEETTSEEEEEEEESSS-EEEEET---TCT-------EEEEEBTTCEEEEEEEESSSEEEEEEE-S--SSSTTGGG-EEE
T ss_pred cccccceEeEEEEcCCcccccccc---ccC-------cccccccccceeeeeeeccCCcEEEcCcc--ccCcCcCCCeEE
Confidence 567888888887753 3444431 110 111 11232 25788999999999997 78776 8888
Q ss_pred EEec
Q 039191 120 INVL 123 (220)
Q Consensus 120 I~V~ 123 (220)
|.|.
T Consensus 117 v~VV 120 (120)
T PF00116_consen 117 VIVV 120 (120)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 8763
No 26
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=71.39 E-value=13 Score=33.49 Aligned_cols=91 Identities=19% Similarity=0.196 Sum_probs=53.2
Q ss_pred ecCCCCceeeCCCCcccccCCC-eeeeCCEEEeeecCC--CCcEEEeCccCCCCCCCCCCccccccCCcEEEeeccccEE
Q 039191 27 VGDDAGWTIQGHIDYSKWAEGK-QFHVGDTLVFKYNKA--MHDVRQVSHEDFQSCNAKAPIEEYTTGMDSITLKMAGHHY 103 (220)
Q Consensus 27 VGg~~GW~~~~~~~Y~~WAs~~-tF~VGDtLvF~y~~~--~HsV~~V~~~~Y~~C~~s~pi~~~s~G~~~v~L~~pG~~Y 103 (220)
+|-.-.|.+.- .+|.-+..+. .+-+|..++|+-++. .|+....... .+. +.+.. ..-...++.+++|.|+
T Consensus 118 ~~~qw~W~f~Y-p~~~~~t~n~l~lPv~~~V~f~ltS~DViHsF~IP~l~-~k~----d~iPG-~~~~~~~~~~~~G~Y~ 190 (247)
T COG1622 118 TAYQWKWLFIY-PDYGIATVNELVLPVGRPVRFKLTSADVIHSFWIPQLG-GKI----DAIPG-MTTELWLTANKPGTYR 190 (247)
T ss_pred EEEEEEEEEEc-cCcCccccceEEEeCCCeEEEEEEechhceeEEecCCC-cee----eecCC-ceEEEEEecCCCeEEE
Confidence 44344565521 1233344443 788999999999875 2444332111 100 01100 1112357889999999
Q ss_pred EEcCCCCCCCCC---CeEEEEecCCC
Q 039191 104 FLCGIPGHCQVG---QKVEINVLPGA 126 (220)
Q Consensus 104 FiCgv~~HC~~G---mKl~I~V~~~~ 126 (220)
.+|.+ .|..| |++.|.|....
T Consensus 191 g~Cae--~CG~gH~~M~~~v~vvs~~ 214 (247)
T COG1622 191 GICAE--YCGPGHSFMRFKVIVVSQE 214 (247)
T ss_pred EEcHh--hcCCCcccceEEEEEEcHH
Confidence 99986 67654 99999998765
No 27
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=70.33 E-value=8.5 Score=37.85 Aligned_cols=79 Identities=14% Similarity=0.118 Sum_probs=48.5
Q ss_pred CeeeeCCEEEeeecCCC----CcE-----EEeCccCCCC-CC-CCCCccccccCCcEEEeeccccEEEEcCCCCCCCCCC
Q 039191 48 KQFHVGDTLVFKYNKAM----HDV-----RQVSHEDFQS-CN-AKAPIEEYTTGMDSITLKMAGHHYFLCGIPGHCQVGQ 116 (220)
Q Consensus 48 ~tF~VGDtLvF~y~~~~----HsV-----~~V~~~~Y~~-C~-~s~pi~~~s~G~~~v~L~~pG~~YFiCgv~~HC~~Gm 116 (220)
.+++.||+|+++..+.. +++ .+......|. -. ...++.-..+-...|+++++|+|||-|....|-..||
T Consensus 34 i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~I~PG~s~~y~f~~~~~Gt~wyH~H~~~q~~~Gl 113 (541)
T TIGR03388 34 IRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCAINPGETFIYNFVVDRPGTYFYHGHYGMQRSAGL 113 (541)
T ss_pred EEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCCcCCCCEEEEEEEcCCCEEEEEEecchHHhhccc
Confidence 58999999999876542 222 2211100111 00 0012211111124688899999999999988999999
Q ss_pred eEEEEecCCC
Q 039191 117 KVEINVLPGA 126 (220)
Q Consensus 117 Kl~I~V~~~~ 126 (220)
.-.|.|....
T Consensus 114 ~G~liV~~~~ 123 (541)
T TIGR03388 114 YGSLIVDVPD 123 (541)
T ss_pred eEEEEEecCC
Confidence 9999997653
No 28
>PLN02354 copper ion binding / oxidoreductase
Probab=67.26 E-value=28 Score=34.61 Aligned_cols=74 Identities=14% Similarity=0.098 Sum_probs=48.3
Q ss_pred CeeeeCCEEEeeecCC--------CCcEEEeCccCC-----CCCCCCCCccccccCCcEEEe-eccccEEEEcCCCCCCC
Q 039191 48 KQFHVGDTLVFKYNKA--------MHDVRQVSHEDF-----QSCNAKAPIEEYTTGMDSITL-KMAGHHYFLCGIPGHCQ 113 (220)
Q Consensus 48 ~tF~VGDtLvF~y~~~--------~HsV~~V~~~~Y-----~~C~~s~pi~~~s~G~~~v~L-~~pG~~YFiCgv~~HC~ 113 (220)
.+++.||+|+.+..++ .|.+.|-..... ..| ++.-..+=...|++ ++.|+|||=+....+-.
T Consensus 60 I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~TQc----pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~ 135 (552)
T PLN02354 60 INSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPGTNC----PIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRA 135 (552)
T ss_pred EEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcCCcC----CCCCCCcEEEEEEeCCCCcceEEecCccceec
Confidence 4788999999887543 455555422112 234 33221222246777 47899999998888888
Q ss_pred CCCeEEEEecCC
Q 039191 114 VGQKVEINVLPG 125 (220)
Q Consensus 114 ~GmKl~I~V~~~ 125 (220)
.|+.-.|.|...
T Consensus 136 ~Gl~G~lII~~~ 147 (552)
T PLN02354 136 AGGFGGLRVNSR 147 (552)
T ss_pred CCccceEEEcCC
Confidence 899888888754
No 29
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=63.88 E-value=4.3 Score=25.85 Aligned_cols=19 Identities=26% Similarity=0.914 Sum_probs=11.3
Q ss_pred cccccCCCeeeeCCEEEee
Q 039191 41 YSKWAEGKQFHVGDTLVFK 59 (220)
Q Consensus 41 Y~~WAs~~tF~VGDtLvF~ 59 (220)
|.+|..++....||.|.|+
T Consensus 1 ~p~W~~~~~Y~~Gd~V~~~ 19 (41)
T PF02839_consen 1 YPAWDPGTTYNAGDRVSYN 19 (41)
T ss_dssp --B--TTCEE-TT-EEEET
T ss_pred CCCcCCCCEEcCCCEEEEC
Confidence 5689999999999999864
No 30
>PLN02168 copper ion binding / pectinesterase
Probab=63.86 E-value=34 Score=34.06 Aligned_cols=79 Identities=10% Similarity=0.051 Sum_probs=48.9
Q ss_pred CeeeeCCEEEeeecCC--------CCcEEEeCccCCCC-CCCCCCccccccCCcEEEee-ccccEEEEcCCCCCCCCCCe
Q 039191 48 KQFHVGDTLVFKYNKA--------MHDVRQVSHEDFQS-CNAKAPIEEYTTGMDSITLK-MAGHHYFLCGIPGHCQVGQK 117 (220)
Q Consensus 48 ~tF~VGDtLvF~y~~~--------~HsV~~V~~~~Y~~-C~~s~pi~~~s~G~~~v~L~-~pG~~YFiCgv~~HC~~GmK 117 (220)
.+++.||+|+.+..++ .|.+.+......|. ...-.+|.-..+=...|+++ ++|+|||=+....+=..|+.
T Consensus 59 I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~ 138 (545)
T PLN02168 59 LNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGY 138 (545)
T ss_pred EEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcce
Confidence 5799999999998654 35555542211221 00011332222222478884 79999999987766677998
Q ss_pred EEEEecCCC
Q 039191 118 VEINVLPGA 126 (220)
Q Consensus 118 l~I~V~~~~ 126 (220)
-.|.|....
T Consensus 139 G~lII~~~~ 147 (545)
T PLN02168 139 GAIRIYNPE 147 (545)
T ss_pred eEEEEcCCc
Confidence 888887543
No 31
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=63.78 E-value=9 Score=33.13 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=26.0
Q ss_pred EEEeeccccEEEEcCCCCCCCCC---CeEEEEecCCC
Q 039191 93 SITLKMAGHHYFLCGIPGHCQVG---QKVEINVLPGA 126 (220)
Q Consensus 93 ~v~L~~pG~~YFiCgv~~HC~~G---mKl~I~V~~~~ 126 (220)
.++.+++|.|+..|.. .|..| |++.|+|....
T Consensus 159 ~~~~~~~G~y~g~C~e--~CG~~H~~M~~~v~v~~~~ 193 (194)
T MTH00047 159 FFCPDRHGVFVGYCSE--LCGVGHSYMPIVIEVVDVD 193 (194)
T ss_pred EEEcCCCEEEEEEeeh--hhCcCcccCcEEEEEEcCC
Confidence 4667899999999986 67654 99999998654
No 32
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=61.80 E-value=18 Score=36.45 Aligned_cols=75 Identities=16% Similarity=0.107 Sum_probs=49.7
Q ss_pred CeeeeCCEEEeeecCC--------CCcEEEeCccC-----CCCCCCCCCccccccCCcEEEe-eccccEEEEcCCCCCCC
Q 039191 48 KQFHVGDTLVFKYNKA--------MHDVRQVSHED-----FQSCNAKAPIEEYTTGMDSITL-KMAGHHYFLCGIPGHCQ 113 (220)
Q Consensus 48 ~tF~VGDtLvF~y~~~--------~HsV~~V~~~~-----Y~~C~~s~pi~~~s~G~~~v~L-~~pG~~YFiCgv~~HC~ 113 (220)
.+++.||+|+.+..+. -|.+.|..... +..| +|.-..+=...|++ ++.|+|||=+....+-.
T Consensus 62 I~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~TQc----PI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~ 137 (596)
T PLN00044 62 LNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVGGTNC----AIPAGWNWTYQFQVKDQVGSFFYAPSTALHRA 137 (596)
T ss_pred EEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCCCCcC----CcCCCCcEEEEEEeCCCCceeEeeccchhhhh
Confidence 4688999999986543 35555542111 2235 33222222257888 48999999999888888
Q ss_pred CCCeEEEEecCCC
Q 039191 114 VGQKVEINVLPGA 126 (220)
Q Consensus 114 ~GmKl~I~V~~~~ 126 (220)
.|+.-.|.|....
T Consensus 138 ~Gl~GalII~~~~ 150 (596)
T PLN00044 138 AGGYGAITINNRD 150 (596)
T ss_pred CcCeeEEEEcCcc
Confidence 8999999887643
No 33
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=60.75 E-value=28 Score=33.26 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=20.1
Q ss_pred EEEeeccccEEEEcCCCCCCCCCCeEEEEecCC
Q 039191 93 SITLKMAGHHYFLCGIPGHCQVGQKVEINVLPG 125 (220)
Q Consensus 93 ~v~L~~pG~~YFiCgv~~HC~~GmKl~I~V~~~ 125 (220)
+++| ++|+|-|+|+. | ..||-.|+|...
T Consensus 91 ~~~L-~pGtY~~~C~~--~--~~~~g~l~Vtg~ 118 (375)
T PRK10378 91 TANL-QPGEYDMTCGL--L--TNPKGKLIVKGE 118 (375)
T ss_pred EEec-CCceEEeecCc--C--CCCCceEEEeCC
Confidence 4556 69999999976 4 335777888653
No 34
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=60.20 E-value=24 Score=35.42 Aligned_cols=85 Identities=20% Similarity=0.380 Sum_probs=52.3
Q ss_pred ceeeCCCCcccccCCCeeeeCCEEEeeecCC---CCcE------EEeCccC--CCCCCCCCCccccccCC---cEEEeec
Q 039191 33 WTIQGHIDYSKWAEGKQFHVGDTLVFKYNKA---MHDV------RQVSHED--FQSCNAKAPIEEYTTGM---DSITLKM 98 (220)
Q Consensus 33 W~~~~~~~Y~~WAs~~tF~VGDtLvF~y~~~---~HsV------~~V~~~~--Y~~C~~s~pi~~~s~G~---~~v~L~~ 98 (220)
|++.. ..|.. ....+++.||.+++.+.+. .|.+ ++|...+ |.. ..+.+ ...-|. ..|..+.
T Consensus 488 wtiNG-~~~~~-~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~G~~~~--~~dTv-~V~Pg~t~~~~f~ad~ 562 (587)
T TIGR01480 488 WSFDG-EAFGL-KTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQGEFQV--RKHTV-DVPPGGKRSFRVTADA 562 (587)
T ss_pred EEECC-ccCCC-CCceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCCCcccc--cCCce-eeCCCCEEEEEEECCC
Confidence 88732 22333 2346899999999999764 2333 3332111 110 00111 112232 2577889
Q ss_pred cccEEEEcCCCCCCCCCCeEEEEe
Q 039191 99 AGHHYFLCGIPGHCQVGQKVEINV 122 (220)
Q Consensus 99 pG~~YFiCgv~~HC~~GmKl~I~V 122 (220)
+|.++|=|-+..|=+.||--.|.|
T Consensus 563 pG~w~~HCH~l~H~~~GM~~~~~v 586 (587)
T TIGR01480 563 LGRWAYHCHMLLHMEAGMFREVTV 586 (587)
T ss_pred CeEEEEcCCCHHHHhCcCcEEEEe
Confidence 999999999999999999888776
No 35
>PLN02191 L-ascorbate oxidase
Probab=59.55 E-value=22 Score=35.48 Aligned_cols=77 Identities=18% Similarity=0.146 Sum_probs=47.2
Q ss_pred CeeeeCCEEEeeecCC---------CCcEEEeCccCCCC-CCCC-CCccccccCCcEEEeeccccEEEEcCCCCCCCCCC
Q 039191 48 KQFHVGDTLVFKYNKA---------MHDVRQVSHEDFQS-CNAK-APIEEYTTGMDSITLKMAGHHYFLCGIPGHCQVGQ 116 (220)
Q Consensus 48 ~tF~VGDtLvF~y~~~---------~HsV~~V~~~~Y~~-C~~s-~pi~~~s~G~~~v~L~~pG~~YFiCgv~~HC~~Gm 116 (220)
.+++.||+|+.+..+. .|.+.+-....+|. -..+ .++.-..+=...|+++++|+|||=|....+-..||
T Consensus 56 i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvtq~pI~PG~s~~Y~f~~~~~GT~wYHsH~~~q~~~Gl 135 (574)
T PLN02191 56 IDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVTQCAINPGETFTYKFTVEKPGTHFYHGHYGMQRSAGL 135 (574)
T ss_pred EEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCccccCCcCCCCeEEEEEECCCCeEEEEeeCcHHHHhCCC
Confidence 4789999999887653 13333221111121 0000 12211111124688899999999999988889999
Q ss_pred eEEEEecC
Q 039191 117 KVEINVLP 124 (220)
Q Consensus 117 Kl~I~V~~ 124 (220)
.-.|.|..
T Consensus 136 ~G~liV~~ 143 (574)
T PLN02191 136 YGSLIVDV 143 (574)
T ss_pred EEEEEEcc
Confidence 99998864
No 36
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=59.44 E-value=8 Score=30.71 Aligned_cols=13 Identities=38% Similarity=0.774 Sum_probs=11.4
Q ss_pred CeeeeCCEEEeee
Q 039191 48 KQFHVGDTLVFKY 60 (220)
Q Consensus 48 ~tF~VGDtLvF~y 60 (220)
++|++||.|+|+=
T Consensus 30 ~~ikvGD~I~f~~ 42 (109)
T cd06555 30 QQIKVGDKILFND 42 (109)
T ss_pred hcCCCCCEEEEEE
Confidence 5899999999974
No 37
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.
Probab=57.36 E-value=4.5 Score=29.76 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=13.3
Q ss_pred cccCCCeeeeCCEEEeeecCC
Q 039191 43 KWAEGKQFHVGDTLVFKYNKA 63 (220)
Q Consensus 43 ~WAs~~tF~VGDtLvF~y~~~ 63 (220)
+.+..+.+++||.++|++...
T Consensus 67 ~Fv~~n~L~~GD~~~F~~~~~ 87 (100)
T PF02362_consen 67 KFVRDNGLKEGDVCVFELIGN 87 (100)
T ss_dssp HHHHHCT--TT-EEEEEE-SS
T ss_pred HHHHHcCCCCCCEEEEEEecC
Confidence 345668899999999999863
No 38
>PRK11372 lysozyme inhibitor; Provisional
Probab=55.72 E-value=79 Score=24.89 Aligned_cols=18 Identities=17% Similarity=0.403 Sum_probs=11.7
Q ss_pred CCEEEeeecCCCCcEEEe
Q 039191 53 GDTLVFKYNKAMHDVRQV 70 (220)
Q Consensus 53 GDtLvF~y~~~~HsV~~V 70 (220)
+|.+.|.|+...+.+.++
T Consensus 50 ~~~v~l~~~~~~~~L~~~ 67 (109)
T PRK11372 50 RQEVSFVYDNQLLHLKQG 67 (109)
T ss_pred CCeEEEEECCEEEEEEEe
Confidence 778888886554444444
No 39
>PLN02991 oxidoreductase
Probab=54.76 E-value=69 Score=31.89 Aligned_cols=74 Identities=15% Similarity=0.189 Sum_probs=47.0
Q ss_pred CeeeeCCEEEeeecCC--------CCcEEEeCccCCC-----CCCCCCCccccccCCcEEEe-eccccEEEEcCCCCCCC
Q 039191 48 KQFHVGDTLVFKYNKA--------MHDVRQVSHEDFQ-----SCNAKAPIEEYTTGMDSITL-KMAGHHYFLCGIPGHCQ 113 (220)
Q Consensus 48 ~tF~VGDtLvF~y~~~--------~HsV~~V~~~~Y~-----~C~~s~pi~~~s~G~~~v~L-~~pG~~YFiCgv~~HC~ 113 (220)
.+++.||+|+.+..+. -|.+.+......| .| +|.-..+=...|++ +++|+|||=+....+-.
T Consensus 61 I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~tQc----pI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~ 136 (543)
T PLN02991 61 IISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYGTTC----PIPPGKNYTYALQVKDQIGSFYYFPSLGFHKA 136 (543)
T ss_pred EEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCCCCC----ccCCCCcEEEEEEeCCCCcceEEecCcchhhh
Confidence 5789999999887654 3555543111122 23 33222222256787 58999999998776666
Q ss_pred CCCeEEEEecCC
Q 039191 114 VGQKVEINVLPG 125 (220)
Q Consensus 114 ~GmKl~I~V~~~ 125 (220)
.|+.-.|.|...
T Consensus 137 ~Gl~G~lIV~~~ 148 (543)
T PLN02991 137 AGGFGAIRISSR 148 (543)
T ss_pred CCCeeeEEEeCC
Confidence 788888878654
No 40
>PLN02835 oxidoreductase
Probab=52.72 E-value=82 Score=31.24 Aligned_cols=77 Identities=13% Similarity=0.119 Sum_probs=47.4
Q ss_pred CeeeeCCEEEeeecCC--------CCcEEEeCccCCCC-CCCCCCccccccCCcEEEe-eccccEEEEcCCCCCCCCCCe
Q 039191 48 KQFHVGDTLVFKYNKA--------MHDVRQVSHEDFQS-CNAKAPIEEYTTGMDSITL-KMAGHHYFLCGIPGHCQVGQK 117 (220)
Q Consensus 48 ~tF~VGDtLvF~y~~~--------~HsV~~V~~~~Y~~-C~~s~pi~~~s~G~~~v~L-~~pG~~YFiCgv~~HC~~GmK 117 (220)
.+++.||+|+.+..++ .|.+.+......|. ...-.++.-..+=...|++ +++|+|||=|....+-..|+.
T Consensus 62 I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~ 141 (539)
T PLN02835 62 LDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGF 141 (539)
T ss_pred EEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCccCcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCccc
Confidence 5789999999887654 35555542222221 0001133222222246776 579999999988778888998
Q ss_pred EEEEecC
Q 039191 118 VEINVLP 124 (220)
Q Consensus 118 l~I~V~~ 124 (220)
-.|.|..
T Consensus 142 G~lIV~~ 148 (539)
T PLN02835 142 GAINVYE 148 (539)
T ss_pred ceeEEeC
Confidence 8888854
No 41
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=52.22 E-value=13 Score=27.02 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=23.1
Q ss_pred CchhHHHHHHHHHHHHhhhccceEEEecCCCC
Q 039191 1 MAMAKSVVVSLTIMALFGAAMAATYTVGDDAG 32 (220)
Q Consensus 1 Ma~~~~~~~~l~~~~l~~~a~A~~~~VGg~~G 32 (220)
||....++.+||+++.+-.-.|-+|.-|+.--
T Consensus 1 MA~Kl~vialLC~aLva~vQ~APQYa~GeeP~ 32 (65)
T PF10731_consen 1 MASKLIVIALLCVALVAIVQSAPQYAPGEEPS 32 (65)
T ss_pred CcchhhHHHHHHHHHHHHHhcCcccCCCCCCC
Confidence 77777777788877666566677898887533
No 42
>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)
Probab=50.29 E-value=13 Score=27.67 Aligned_cols=16 Identities=38% Similarity=0.949 Sum_probs=12.5
Q ss_pred CeeeeCCEEEee-ecCC
Q 039191 48 KQFHVGDTLVFK-YNKA 63 (220)
Q Consensus 48 ~tF~VGDtLvF~-y~~~ 63 (220)
..|+|||.|+++ |..+
T Consensus 27 Rdf~VGD~L~L~E~~~~ 43 (72)
T PF12961_consen 27 RDFQVGDILVLREWDNG 43 (72)
T ss_pred CCCCCCCEEEEEEecCC
Confidence 579999999886 5543
No 43
>PF01456 Mucin: Mucin-like glycoprotein; InterPro: IPR000458 This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated []. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells.
Probab=48.62 E-value=25 Score=28.01 Aligned_cols=19 Identities=47% Similarity=0.670 Sum_probs=15.2
Q ss_pred cccchhhhhHHHHHHhhcc
Q 039191 200 SSNFWFAAPGMLAVFLTAF 218 (220)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~ 218 (220)
++.-|.-|||.|+|-+.|.
T Consensus 121 s~sawv~apl~la~salay 139 (143)
T PF01456_consen 121 SSSAWVCAPLLLAVSALAY 139 (143)
T ss_pred ccchHHHHHHHHHHHHHHH
Confidence 3457999999999988764
No 44
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=47.08 E-value=48 Score=33.33 Aligned_cols=75 Identities=15% Similarity=0.153 Sum_probs=44.7
Q ss_pred CeeeeCCEEEeeecCCC--------CcEEEeCccCCCC-CCCC-CCccccccCCcEEEeeccccEEEEcCCCCCCCCCCe
Q 039191 48 KQFHVGDTLVFKYNKAM--------HDVRQVSHEDFQS-CNAK-APIEEYTTGMDSITLKMAGHHYFLCGIPGHCQVGQK 117 (220)
Q Consensus 48 ~tF~VGDtLvF~y~~~~--------HsV~~V~~~~Y~~-C~~s-~pi~~~s~G~~~v~L~~pG~~YFiCgv~~HC~~GmK 117 (220)
.+++.||.|+.++.+.. |.+..-+. .|. ...+ .++.-..+-...|++.++|+|||=|....+=+.|+.
T Consensus 78 ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~~--~DGvP~vt~~~I~PG~s~~Y~f~~~~~GTyWYHsH~~~q~~~GL~ 155 (587)
T TIGR01480 78 LRWREGDTVRLRVTNTLPEDTSIHWHGILLPFQ--MDGVPGVSFAGIAPGETFTYRFPVRQSGTYWYHSHSGFQEQAGLY 155 (587)
T ss_pred EEEECCCEEEEEEEcCCCCCceEEcCCCcCCcc--ccCCCcccccccCCCCeEEEEEECCCCeeEEEecCchhHhhccce
Confidence 47899999999887541 22221111 110 1111 112111111246788899999999987777778998
Q ss_pred EEEEecC
Q 039191 118 VEINVLP 124 (220)
Q Consensus 118 l~I~V~~ 124 (220)
-.|.|..
T Consensus 156 G~lIV~~ 162 (587)
T TIGR01480 156 GPLIIDP 162 (587)
T ss_pred EEEEECC
Confidence 8888864
No 45
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=44.99 E-value=49 Score=27.48 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=28.3
Q ss_pred CeeeeCCEEEeeec-----CCCCcEEEeCccCCCCCCCCCC
Q 039191 48 KQFHVGDTLVFKYN-----KAMHDVRQVSHEDFQSCNAKAP 83 (220)
Q Consensus 48 ~tF~VGDtLvF~y~-----~~~HsV~~V~~~~Y~~C~~s~p 83 (220)
...+.||.+++.-. ...|+.+.++...+-.|+....
T Consensus 74 ~~~q~GDI~I~g~~g~S~G~~GHtgif~~~~~iIhc~y~~~ 114 (145)
T PF05382_consen 74 WNLQRGDIFIWGRRGNSAGAGGHTGIFMDNDTIIHCNYGAN 114 (145)
T ss_pred ccccCCCEEEEcCCCCCCCCCCeEEEEeCCCcEEEecCCCC
Confidence 46899999998665 2359999998888899998544
No 46
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=43.41 E-value=1e+02 Score=22.41 Aligned_cols=17 Identities=18% Similarity=0.473 Sum_probs=13.9
Q ss_pred eeeeCCEEEeeecCCCC
Q 039191 49 QFHVGDTLVFKYNKAMH 65 (220)
Q Consensus 49 tF~VGDtLvF~y~~~~H 65 (220)
.|++||.|.|.+..+.+
T Consensus 2 ~~~~Ge~v~~~~~~~~~ 18 (83)
T PF14326_consen 2 VYRVGERVRFRVTSNRD 18 (83)
T ss_pred cccCCCEEEEEEEeCCC
Confidence 58899999999987533
No 47
>PLN02792 oxidoreductase
Probab=43.31 E-value=62 Score=32.11 Aligned_cols=80 Identities=10% Similarity=0.107 Sum_probs=0.0
Q ss_pred CCeeeeCCEEEeeecCC--------CCcEEEeCccCCCCCCCCC-CccccccCCcEEEe-eccccEEEEcCCCCCCCCCC
Q 039191 47 GKQFHVGDTLVFKYNKA--------MHDVRQVSHEDFQSCNAKA-PIEEYTTGMDSITL-KMAGHHYFLCGIPGHCQVGQ 116 (220)
Q Consensus 47 ~~tF~VGDtLvF~y~~~--------~HsV~~V~~~~Y~~C~~s~-pi~~~s~G~~~v~L-~~pG~~YFiCgv~~HC~~Gm 116 (220)
..+++.||+|+.+..++ -|.+.+......|.=-.++ +|.-..+=...|++ ++.|+|||=+....+-..|+
T Consensus 48 ~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~tqcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl 127 (536)
T PLN02792 48 EIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGTTCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGG 127 (536)
T ss_pred cEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCCcCccCCCCcEEEEEEeCCCccceEEecCcchhhhccc
Q ss_pred eEEEEecCCC
Q 039191 117 KVEINVLPGA 126 (220)
Q Consensus 117 Kl~I~V~~~~ 126 (220)
.-.|.|....
T Consensus 128 ~G~liI~~~~ 137 (536)
T PLN02792 128 YGSLRIYSLP 137 (536)
T ss_pred ccceEEeCCc
No 48
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=41.18 E-value=35 Score=29.91 Aligned_cols=31 Identities=23% Similarity=0.375 Sum_probs=25.0
Q ss_pred EEEeeccccEEEEcCCCCCCCCC---CeEEEEecCC
Q 039191 93 SITLKMAGHHYFLCGIPGHCQVG---QKVEINVLPG 125 (220)
Q Consensus 93 ~v~L~~pG~~YFiCgv~~HC~~G---mKl~I~V~~~ 125 (220)
.++.+++|.||..|.. -|..| |++.|.|...
T Consensus 183 ~~~~~~~g~y~~~C~e--~CG~~H~~M~~~v~v~~~ 216 (228)
T MTH00140 183 SFEPKRPGVFYGQCSE--ICGANHSFMPIVVEAVPL 216 (228)
T ss_pred EEEeCCCEEEEEECcc--ccCcCcCCCeEEEEEECH
Confidence 4677899999999987 77665 9999888753
No 49
>PF09792 But2: Ubiquitin 3 binding protein But2 C-terminal domain; InterPro: IPR018620 This entry represents a presumed C-terminal domain of ubiquitin 3 binding proteins (But2). But2 is conserved in yeasts. It binds to Uba3 and is involved in the NEDD8 signalling pathway [].
Probab=40.84 E-value=87 Score=25.72 Aligned_cols=32 Identities=22% Similarity=0.408 Sum_probs=26.4
Q ss_pred EEEeeccccEEEEcCCCCCCCCCCeEEEEecCCCC
Q 039191 93 SITLKMAGHHYFLCGIPGHCQVGQKVEINVLPGAS 127 (220)
Q Consensus 93 ~v~L~~pG~~YFiCgv~~HC~~GmKl~I~V~~~~s 127 (220)
.+++.. |..|-|.. ..|..||++...+.....
T Consensus 100 ~~~~~p-G~~y~i~~--f~Cp~g~~v~ye~~~~g~ 131 (143)
T PF09792_consen 100 TFTVSP-GNSYVINT--FPCPAGQAVSYEMSSAGD 131 (143)
T ss_pred ceEECC-CCceEeCc--EeCCCCCEEEEEEEecCC
Confidence 477776 99999986 699999999999887643
No 50
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=39.88 E-value=81 Score=31.05 Aligned_cols=78 Identities=19% Similarity=0.211 Sum_probs=0.0
Q ss_pred eeeeCCEEEeeecCC--------CCcEEEeCccCCC--CCCCCCCccccccCCcEEEe-eccccEEEEcCCCCCCCCCCe
Q 039191 49 QFHVGDTLVFKYNKA--------MHDVRQVSHEDFQ--SCNAKAPIEEYTTGMDSITL-KMAGHHYFLCGIPGHCQVGQK 117 (220)
Q Consensus 49 tF~VGDtLvF~y~~~--------~HsV~~V~~~~Y~--~C~~s~pi~~~s~G~~~v~L-~~pG~~YFiCgv~~HC~~GmK 117 (220)
+++.||+|+.+..+. .|.+.+......| ...+--++.-..+=...|++ +++|+|||=|....... ||.
T Consensus 37 ~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~~-Gl~ 115 (539)
T TIGR03389 37 YAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQCPIQPGQSYVYNFTITGQRGTLWWHAHISWLRA-TVY 115 (539)
T ss_pred EEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccCCcCCCCeEEEEEEecCCCeeEEEecCchhhhc-cce
Q ss_pred EEEEecCCCC
Q 039191 118 VEINVLPGAS 127 (220)
Q Consensus 118 l~I~V~~~~s 127 (220)
-.|.|.....
T Consensus 116 G~lIV~~~~~ 125 (539)
T TIGR03389 116 GAIVILPKPG 125 (539)
T ss_pred EEEEEcCCCC
No 51
>TIGR02228 sigpep_I_arch signal peptidase I, archaeal type. This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.
Probab=38.46 E-value=79 Score=26.31 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=17.0
Q ss_pred CeeeeCCEEEeeecCC----CCcEEEe
Q 039191 48 KQFHVGDTLVFKYNKA----MHDVRQV 70 (220)
Q Consensus 48 ~tF~VGDtLvF~y~~~----~HsV~~V 70 (220)
..++.||.++|+...+ .|.|..+
T Consensus 59 ~~~~~GDIVvf~~~~~~~~iihRVi~v 85 (158)
T TIGR02228 59 NDIQVGDVITYKSPGFNTPVTHRVIEI 85 (158)
T ss_pred CCCCCCCEEEEEECCCCccEEEEEEEE
Confidence 5789999999998764 3555555
No 52
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=37.43 E-value=42 Score=25.91 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=27.1
Q ss_pred EEEeeccccEEEEcCCCCCCCCCCeEEEEecC
Q 039191 93 SITLKMAGHHYFLCGIPGHCQVGQKVEINVLP 124 (220)
Q Consensus 93 ~v~L~~pG~~YFiCgv~~HC~~GmKl~I~V~~ 124 (220)
.+..+.+|.+.|=|-+..|=..||...|.|..
T Consensus 105 ~~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 105 RFRADNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEEETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred EEEeecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 36678899999999999999999999998864
No 53
>TIGR03511 GldH_lipo gliding motility-associated lipoprotein GldH. Members of this protein family are predicted lipoproteins, exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). Members include GldH, a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family may have gliding motility.
Probab=34.41 E-value=1.3e+02 Score=25.22 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=14.8
Q ss_pred CCEEEeeecC----CCCcE-EEe-CccCCCCCCC
Q 039191 53 GDTLVFKYNK----AMHDV-RQV-SHEDFQSCNA 80 (220)
Q Consensus 53 GDtLvF~y~~----~~HsV-~~V-~~~~Y~~C~~ 80 (220)
.|+|.|++.. +.+++ +.+ +..+|.-+|.
T Consensus 41 ~d~l~F~~~~~d~~~~y~l~l~lR~n~~Ypy~nl 74 (156)
T TIGR03511 41 SDTLDFEIPITDYTASYRLFLLIRNDNRYPYRNL 74 (156)
T ss_pred CCcEEEEEeecCCCCcEEEEEEEEcCCCCcccCe
Confidence 4666666652 34555 334 5566655554
No 54
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=33.48 E-value=54 Score=27.91 Aligned_cols=30 Identities=13% Similarity=0.243 Sum_probs=22.8
Q ss_pred EEEeeccccEEEEcCCCCCCCC---CCeEEEEecC
Q 039191 93 SITLKMAGHHYFLCGIPGHCQV---GQKVEINVLP 124 (220)
Q Consensus 93 ~v~L~~pG~~YFiCgv~~HC~~---GmKl~I~V~~ 124 (220)
.+..+++|.||..|.. -|.. .|.+.|.|..
T Consensus 116 ~~~~~~~G~y~gqCsE--lCG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 116 NTFILREGVFYGQCSE--MCGTLHGFMPIVVEAVS 148 (162)
T ss_pred EEecCCCeEEEEEcch--hcCcCccCceEEEEEeC
Confidence 3567889999999986 5554 4888888764
No 55
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=33.36 E-value=54 Score=28.85 Aligned_cols=30 Identities=13% Similarity=0.328 Sum_probs=23.8
Q ss_pred EEEeeccccEEEEcCCCCCCCCC---CeEEEEecC
Q 039191 93 SITLKMAGHHYFLCGIPGHCQVG---QKVEINVLP 124 (220)
Q Consensus 93 ~v~L~~pG~~YFiCgv~~HC~~G---mKl~I~V~~ 124 (220)
.++.+++|.||..|+. -|..| |++.|.|..
T Consensus 183 ~~~~~~~G~y~g~Cse--~CG~~H~~M~~~v~vv~ 215 (227)
T MTH00154 183 NFLINRPGLFFGQCSE--ICGANHSFMPIVIESVS 215 (227)
T ss_pred EEEEcCceEEEEEeec--hhCcCccCCeEEEEEeC
Confidence 4678899999999986 56554 888888764
No 56
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=32.13 E-value=57 Score=28.60 Aligned_cols=30 Identities=17% Similarity=0.399 Sum_probs=24.0
Q ss_pred EEEeeccccEEEEcCCCCCCCCC---CeEEEEecC
Q 039191 93 SITLKMAGHHYFLCGIPGHCQVG---QKVEINVLP 124 (220)
Q Consensus 93 ~v~L~~pG~~YFiCgv~~HC~~G---mKl~I~V~~ 124 (220)
.++.+++|.||..|.. -|..| |++.|.|..
T Consensus 183 ~~~~~~~G~~~g~CsE--~CG~~Hs~M~~~v~vv~ 215 (225)
T MTH00168 183 AFLSSRPGSFYGQCSE--ICGANHSFMPIVVEFVP 215 (225)
T ss_pred EEEcCCCEEEEEEccc--ccCcCcCCCeEEEEEeC
Confidence 4677899999999986 67655 888888765
No 57
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=31.28 E-value=32 Score=27.79 Aligned_cols=18 Identities=28% Similarity=0.615 Sum_probs=15.7
Q ss_pred CeeeeCCEEEeeecCCCC
Q 039191 48 KQFHVGDTLVFKYNKAMH 65 (220)
Q Consensus 48 ~tF~VGDtLvF~y~~~~H 65 (220)
++|++||.+.|-++...|
T Consensus 41 ~~f~~GDlvLflpt~~~~ 58 (129)
T PF10377_consen 41 RNFQVGDLVLFLPTRNHN 58 (129)
T ss_pred ecCCCCCEEEEEecCCCC
Confidence 589999999999998744
No 58
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=31.17 E-value=58 Score=28.50 Aligned_cols=30 Identities=13% Similarity=0.355 Sum_probs=24.1
Q ss_pred EEEeeccccEEEEcCCCCCCCCC---CeEEEEecC
Q 039191 93 SITLKMAGHHYFLCGIPGHCQVG---QKVEINVLP 124 (220)
Q Consensus 93 ~v~L~~pG~~YFiCgv~~HC~~G---mKl~I~V~~ 124 (220)
.++.+++|.||..|+. -|..| |++.|+|..
T Consensus 183 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~ 215 (226)
T MTH00139 183 GFFINRPGVFYGQCSE--ICGANHSFMPIVVEAIS 215 (226)
T ss_pred EEEcCCCEEEEEEChh--hcCcCcCCCeEEEEEeC
Confidence 4677899999999986 67654 898888764
No 59
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=31.06 E-value=66 Score=28.29 Aligned_cols=30 Identities=20% Similarity=0.396 Sum_probs=24.0
Q ss_pred EEEeeccccEEEEcCCCCCCCCC---CeEEEEecC
Q 039191 93 SITLKMAGHHYFLCGIPGHCQVG---QKVEINVLP 124 (220)
Q Consensus 93 ~v~L~~pG~~YFiCgv~~HC~~G---mKl~I~V~~ 124 (220)
.++.+++|.||..|+. -|..| |++.|.|..
T Consensus 183 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~ 215 (227)
T MTH00117 183 SFITTRPGVFYGQCSE--ICGANHSFMPIVVESVP 215 (227)
T ss_pred EEEEcccceEEEEecc--ccccCccCCeEEEEEcC
Confidence 4678899999999987 66554 898888764
No 60
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=29.86 E-value=60 Score=28.64 Aligned_cols=30 Identities=17% Similarity=0.335 Sum_probs=23.5
Q ss_pred EEEeeccccEEEEcCCCCCCCC---CCeEEEEecC
Q 039191 93 SITLKMAGHHYFLCGIPGHCQV---GQKVEINVLP 124 (220)
Q Consensus 93 ~v~L~~pG~~YFiCgv~~HC~~---GmKl~I~V~~ 124 (220)
.++.+++|.||..|+. -|.. .|++.|.|..
T Consensus 183 ~~~~~~~G~~~g~C~e--~CG~~H~~M~~~v~vv~ 215 (230)
T MTH00129 183 AFIASRPGVFYGQCSE--ICGANHSFMPIVVEAVP 215 (230)
T ss_pred EEEeCCceEEEEEChh--hccccccCCcEEEEEEC
Confidence 4677899999999987 5654 4888888764
No 61
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=29.84 E-value=73 Score=32.10 Aligned_cols=63 Identities=22% Similarity=0.199 Sum_probs=40.2
Q ss_pred ccccCCCeeeeCCEEEeeecCCCCcEEEeCccCCCCCCCCC----Cccc-cccCCc-EEEeeccccEEE
Q 039191 42 SKWAEGKQFHVGDTLVFKYNKAMHDVRQVSHEDFQSCNAKA----PIEE-YTTGMD-SITLKMAGHHYF 104 (220)
Q Consensus 42 ~~WAs~~tF~VGDtLvF~y~~~~HsV~~V~~~~Y~~C~~s~----pi~~-~s~G~~-~v~L~~pG~~YF 104 (220)
++=.++++|..-|.+.|+|++....++.+...+.|.-+.+- .+.. -.+|++ .|.|.+.|+.|=
T Consensus 207 ~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhd 275 (566)
T KOG2315|consen 207 HQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHD 275 (566)
T ss_pred cchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceE
Confidence 34446689999999999999877888777666766544431 1111 123554 466666665543
No 62
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=29.51 E-value=66 Score=28.36 Aligned_cols=30 Identities=17% Similarity=0.392 Sum_probs=23.5
Q ss_pred EEEeeccccEEEEcCCCCCCCCC---CeEEEEecC
Q 039191 93 SITLKMAGHHYFLCGIPGHCQVG---QKVEINVLP 124 (220)
Q Consensus 93 ~v~L~~pG~~YFiCgv~~HC~~G---mKl~I~V~~ 124 (220)
.++.+++|.||..|+. -|..| |.+.|.|..
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~H~~M~~~v~v~~ 215 (227)
T MTH00098 183 TLMSTRPGLYYGQCSE--ICGSNHSFMPIVLELVP 215 (227)
T ss_pred EEecCCcEEEEEECcc--ccCcCcCCceEEEEEeC
Confidence 4677899999999987 56554 888888764
No 63
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=29.41 E-value=63 Score=28.48 Aligned_cols=30 Identities=10% Similarity=-0.057 Sum_probs=24.3
Q ss_pred EEEeeccccEEEEcCCCCCCCCC---CeEEEEecC
Q 039191 93 SITLKMAGHHYFLCGIPGHCQVG---QKVEINVLP 124 (220)
Q Consensus 93 ~v~L~~pG~~YFiCgv~~HC~~G---mKl~I~V~~ 124 (220)
.++.+++|.|+-.|.. .|..| |++.|.|..
T Consensus 182 ~~~~~~~G~y~g~CaE--~CG~~Ha~M~~~V~v~~ 214 (226)
T TIGR01433 182 HLIANEPGVYDGISAN--YSGPGFSGMKFKAIATD 214 (226)
T ss_pred EEEeCCCEEEEEEchh--hcCcCccCCeEEEEEEC
Confidence 4778999999999986 67654 999988865
No 64
>PRK14125 cell division suppressor protein YneA; Provisional
Probab=29.15 E-value=44 Score=26.04 Aligned_cols=9 Identities=44% Similarity=0.560 Sum_probs=5.9
Q ss_pred CeeeeCCEE
Q 039191 48 KQFHVGDTL 56 (220)
Q Consensus 48 ~tF~VGDtL 56 (220)
.+++-||+|
T Consensus 39 ~tV~~GDTL 47 (103)
T PRK14125 39 ITVQEGDTL 47 (103)
T ss_pred EEECCCCCH
Confidence 366777776
No 65
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=28.96 E-value=1.9e+02 Score=29.35 Aligned_cols=7 Identities=57% Similarity=1.336 Sum_probs=2.8
Q ss_pred CCCCCCC
Q 039191 180 PGEGSSS 186 (220)
Q Consensus 180 ~~~~~~~ 186 (220)
||+..++
T Consensus 308 pG~gatA 314 (574)
T PF07462_consen 308 PGEGATA 314 (574)
T ss_pred CCCCCCc
Confidence 3444433
No 66
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.90 E-value=1.8e+02 Score=29.32 Aligned_cols=78 Identities=23% Similarity=0.344 Sum_probs=0.0
Q ss_pred CCeeeeCCEEEeeecCC--------CCcEEEeCccCC------CCCCCCCCccccccCCcEEEee-ccccEEEEcCCCCC
Q 039191 47 GKQFHVGDTLVFKYNKA--------MHDVRQVSHEDF------QSCNAKAPIEEYTTGMDSITLK-MAGHHYFLCGIPGH 111 (220)
Q Consensus 47 ~~tF~VGDtLvF~y~~~--------~HsV~~V~~~~Y------~~C~~s~pi~~~s~G~~~v~L~-~pG~~YFiCgv~~H 111 (220)
..+...||+|+.+..+. -|.|.|. +..| ..|-+. |-+.|+ ..|+++ +.|++||.....-|
T Consensus 60 ~I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~-kn~w~DG~~~TqCPI~-Pg~~~t---Y~F~v~~q~GT~~yh~h~~~~ 134 (563)
T KOG1263|consen 60 TINAEEGDTIVVNVVNRLDEPFSIHWHGVRQR-KNPWQDGVYITQCPIQ-PGENFT---YRFTVKDQIGTLWYHSHVSWQ 134 (563)
T ss_pred eEEEEeCCEEEEEEEeCCCCceEEEecccccc-CCccccCCccccCCcC-CCCeEE---EEEEeCCcceeEEEeeccccc
Q ss_pred CCCCCeEEEEecCCCCCC
Q 039191 112 CQVGQKVEINVLPGASSP 129 (220)
Q Consensus 112 C~~GmKl~I~V~~~~s~~ 129 (220)
-..|+.-.+.|......+
T Consensus 135 Ra~G~~G~liI~~~~~~p 152 (563)
T KOG1263|consen 135 RATGVFGALIINPRPGLP 152 (563)
T ss_pred cccCceeEEEEcCCccCC
No 67
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=28.85 E-value=72 Score=28.08 Aligned_cols=30 Identities=20% Similarity=0.430 Sum_probs=23.9
Q ss_pred EEEeeccccEEEEcCCCCCCCCC---CeEEEEecC
Q 039191 93 SITLKMAGHHYFLCGIPGHCQVG---QKVEINVLP 124 (220)
Q Consensus 93 ~v~L~~pG~~YFiCgv~~HC~~G---mKl~I~V~~ 124 (220)
.++.+++|.||..|.. -|..| |++.|.|..
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~Hs~M~~~v~vv~ 215 (229)
T MTH00038 183 TFFISRTGLFYGQCSE--ICGANHSFMPIVIESVP 215 (229)
T ss_pred EEEcCCCEEEEEEccc--ccCcCcCCCeEEEEEeC
Confidence 4677899999999986 56654 898888764
No 68
>PF08605 Rad9_Rad53_bind: Fungal Rad9-like Rad53-binding; InterPro: IPR013914 In Saccharomyces cerevisiae (Baker s yeast), the Rad9 is a key adaptor protein in DNA damage checkpoint pathways. DNA damage induces Rad9 phosphorylation, and Rad53 specifically associates with this region of Rad9, when phosphorylated, via the Rad53 IPR000253 from INTERPRO domain []. There is no clear higher eukaryotic ortholog to Rad9.
Probab=27.58 E-value=1.1e+02 Score=25.13 Aligned_cols=47 Identities=17% Similarity=0.147 Sum_probs=30.4
Q ss_pred CeeeeCCEEEeeecCCCCcEEEeCcc-CCCCCCCCCCccccccCCcEEEeecc
Q 039191 48 KQFHVGDTLVFKYNKAMHDVRQVSHE-DFQSCNAKAPIEEYTTGMDSITLKMA 99 (220)
Q Consensus 48 ~tF~VGDtLvF~y~~~~HsV~~V~~~-~Y~~C~~s~pi~~~s~G~~~v~L~~p 99 (220)
..+++||+|..+..+..|-|.-+... ..+.+. -+.-.|.++|.|.+-
T Consensus 58 LDlRIGD~Vkv~~~k~~yiV~Gl~~~~~~~~~~-----i~cirGy~tV~Lk~~ 105 (131)
T PF08605_consen 58 LDLRIGDTVKVDGPKVTYIVVGLECKISSEDNI-----ITCIRGYNTVYLKRR 105 (131)
T ss_pred eeeecCCEEEECCCCccEEEEEeeecCCCCCCc-----eEEcCCCcEEEEEEc
Confidence 46899999998886656777766322 222222 244568888888653
No 69
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=26.51 E-value=74 Score=27.57 Aligned_cols=31 Identities=13% Similarity=0.066 Sum_probs=25.2
Q ss_pred EEEeeccccEEEEcCCCCCCCCC---CeEEEEecCC
Q 039191 93 SITLKMAGHHYFLCGIPGHCQVG---QKVEINVLPG 125 (220)
Q Consensus 93 ~v~L~~pG~~YFiCgv~~HC~~G---mKl~I~V~~~ 125 (220)
.++.+++|.||-.|.. .|-.| |++.|.|...
T Consensus 173 ~~~~~~~G~y~g~Cae--~CG~~Hs~M~~~v~v~~~ 206 (217)
T TIGR01432 173 YLQADQVGTYRGRNAN--FNGEGFADQTFDVNAVSE 206 (217)
T ss_pred EEEeCCCEEEEEEehh--hcCccccCCeEEEEEeCH
Confidence 5778899999999986 67664 9999988753
No 70
>PRK13791 lysozyme inhibitor; Provisional
Probab=26.48 E-value=3.3e+02 Score=21.66 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=18.9
Q ss_pred EEEeeecCCCCcEEEe-C--ccCCCCCCCCCCccccccCCc
Q 039191 55 TLVFKYNKAMHDVRQV-S--HEDFQSCNAKAPIEEYTTGMD 92 (220)
Q Consensus 55 tLvF~y~~~~HsV~~V-~--~~~Y~~C~~s~pi~~~s~G~~ 92 (220)
..+|+|+...+...+| + -.-|..=+..+....++.|++
T Consensus 55 ~A~l~~~g~~i~l~~v~SaSGarY~~~~~~~~y~~WtKG~~ 95 (113)
T PRK13791 55 YAIISQVDEMIPMRLMKMASGANYEAINKNYTYKLYTKGKT 95 (113)
T ss_pred EEEEEECCeEEEEEEEeecCcceeeccCCCceEEEEEcCCe
Confidence 5788887765555555 2 233433222233334455554
No 71
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=26.04 E-value=81 Score=28.00 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=24.5
Q ss_pred EEEeeccccEEEEcCCCCCCCCC---CeEEEEecCC
Q 039191 93 SITLKMAGHHYFLCGIPGHCQVG---QKVEINVLPG 125 (220)
Q Consensus 93 ~v~L~~pG~~YFiCgv~~HC~~G---mKl~I~V~~~ 125 (220)
.++.+++|.||..|.. .|..| |++.|+|...
T Consensus 194 ~~~~~~~G~y~g~C~e--~CG~~Hs~M~~~v~vv~~ 227 (240)
T MTH00023 194 GFFIKRPGVFYGQCSE--ICGANHSFMPIVIEAVSL 227 (240)
T ss_pred EEEcCCCEEEEEEchh--hcCcCccCCeEEEEEECH
Confidence 4677899999999986 67665 8888887653
No 72
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=25.81 E-value=1.2e+02 Score=18.53 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=22.0
Q ss_pred cEEEeeccccEEEEcCCCCCCCCCCe
Q 039191 92 DSITLKMAGHHYFLCGIPGHCQVGQK 117 (220)
Q Consensus 92 ~~v~L~~pG~~YFiCgv~~HC~~GmK 117 (220)
..+.++.-|.-||=.|+...|..|+.
T Consensus 2 ~VWav~~~G~v~~R~Gis~~~P~G~~ 27 (32)
T PF06462_consen 2 QVWAVTSDGSVYFRTGISPSNPEGTS 27 (32)
T ss_pred eEEEEcCCCCEEEECcCCCCCCCCCC
Confidence 35678888999999999999999974
No 73
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=24.68 E-value=90 Score=27.50 Aligned_cols=30 Identities=17% Similarity=0.372 Sum_probs=23.7
Q ss_pred EEEeeccccEEEEcCCCCCCCCC---CeEEEEecC
Q 039191 93 SITLKMAGHHYFLCGIPGHCQVG---QKVEINVLP 124 (220)
Q Consensus 93 ~v~L~~pG~~YFiCgv~~HC~~G---mKl~I~V~~ 124 (220)
.++.+++|.||..|+. -|..| |++.|.|..
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~Hs~M~~~v~vv~ 215 (228)
T MTH00008 183 GFTITRPGVFYGQCSE--ICGANHSFMPIVLEAVD 215 (228)
T ss_pred EEEeCCCEEEEEEChh--hcCcCccCceeEEEEEC
Confidence 4677899999999986 66554 888888765
No 74
>COG3627 PhnJ Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=24.58 E-value=78 Score=28.56 Aligned_cols=25 Identities=24% Similarity=0.586 Sum_probs=21.3
Q ss_pred cEEEeeccccEEEEcCCCCCCCCCC
Q 039191 92 DSITLKMAGHHYFLCGIPGHCQVGQ 116 (220)
Q Consensus 92 ~~v~L~~pG~~YFiCgv~~HC~~Gm 116 (220)
|.+.++.-|-+-|+|+..+||++-+
T Consensus 257 DEvi~DD~G~rmfvCSDTD~C~~r~ 281 (291)
T COG3627 257 DEVVLDDKGGRMFVCSDTDFCEQRR 281 (291)
T ss_pred eeeEEcCCCceEEEecCchHHHhHH
Confidence 4678888899999999999998643
No 75
>PRK09723 putative fimbrial-like adhesin protein; Provisional
Probab=24.17 E-value=4.7e+02 Score=25.61 Aligned_cols=12 Identities=25% Similarity=0.346 Sum_probs=8.3
Q ss_pred ccceEEEecCCC
Q 039191 20 AMAATYTVGDDA 31 (220)
Q Consensus 20 a~A~~~~VGg~~ 31 (220)
+....|.||+..
T Consensus 25 ~~~~~~~vg~~~ 36 (421)
T PRK09723 25 DDNVSYIVGNYY 36 (421)
T ss_pred cCceEEEEcccc
Confidence 446678999843
No 76
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=23.93 E-value=76 Score=23.44 Aligned_cols=40 Identities=23% Similarity=0.532 Sum_probs=30.3
Q ss_pred eEEEecCCC---Cceee------C---CCCcccccCCCeeeeCCEEEeeecC
Q 039191 23 ATYTVGDDA---GWTIQ------G---HIDYSKWAEGKQFHVGDTLVFKYNK 62 (220)
Q Consensus 23 ~~~~VGg~~---GW~~~------~---~~~Y~~WAs~~tF~VGDtLvF~y~~ 62 (220)
..|+||+.. .|+.. . ..+|..|.....+..|..+.|||--
T Consensus 17 ~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 17 SVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEE
Confidence 458899853 59861 1 1368999998899999999999963
No 77
>PF11766 Candida_ALS_N: Cell-wall agglutinin N-terminal ligand-sugar binding ; InterPro: IPR024672 This N-terminal domain is likely to be the sugar or ligand binding domain of yeast alpha-agglutinin [] and agglutinin-like (ALS) proteins.; PDB: 2YLH_A 2Y7M_A 2Y7L_A 2Y7O_A 2Y7N_A.
Probab=23.60 E-value=38 Score=30.61 Aligned_cols=34 Identities=24% Similarity=0.514 Sum_probs=22.5
Q ss_pred CeeeeCCEE------EeeecCCCCcEEE-eCccCCCCCCCC
Q 039191 48 KQFHVGDTL------VFKYNKAMHDVRQ-VSHEDFQSCNAK 81 (220)
Q Consensus 48 ~tF~VGDtL------vF~y~~~~HsV~~-V~~~~Y~~C~~s 81 (220)
..++.||+. |||+...+.+|.. ++...|..|++.
T Consensus 7 s~v~~GDtFtL~MPcVfKf~t~~~sv~L~~~~~~yAtC~~~ 47 (249)
T PF11766_consen 7 SNVSPGDTFTLTMPCVFKFTTSQTSVDLTAGGTTYATCTFQ 47 (249)
T ss_dssp TT--TT-EEEEEEETEEEESSS-SEEEEEETTEEEEEEEEE
T ss_pred cccCCCCEEEEecceEEEEecCCCEEEEEeCCEEEEEeccc
Confidence 588999987 7888877677755 377778887754
No 78
>smart00495 ChtBD3 Chitin-binding domain type 3.
Probab=23.56 E-value=51 Score=20.81 Aligned_cols=18 Identities=22% Similarity=0.724 Sum_probs=13.2
Q ss_pred cccccCCCeeeeCCEEEe
Q 039191 41 YSKWAEGKQFHVGDTLVF 58 (220)
Q Consensus 41 Y~~WAs~~tF~VGDtLvF 58 (220)
|..|...+.-..||.+.+
T Consensus 1 ~~~W~~~~~Y~~Gd~V~~ 18 (41)
T smart00495 1 APAWQAGTVYTAGDVVSY 18 (41)
T ss_pred CCccCCCCcCcCCCEEEE
Confidence 456777777778888765
No 79
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=23.02 E-value=96 Score=22.57 Aligned_cols=39 Identities=23% Similarity=0.607 Sum_probs=28.2
Q ss_pred eEEEecCC---CCceee-----CCCCcccccCCCeeeeCCEEEeeec
Q 039191 23 ATYTVGDD---AGWTIQ-----GHIDYSKWAEGKQFHVGDTLVFKYN 61 (220)
Q Consensus 23 ~~~~VGg~---~GW~~~-----~~~~Y~~WAs~~tF~VGDtLvF~y~ 61 (220)
..+++|+. .+|... ...++..|.....+..++.+.|||-
T Consensus 16 ~l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l~~~~~~eYKy~ 62 (95)
T cd05808 16 NVYVVGNVPELGNWSPANAVALSAATYPVWSGTVDLPAGTAIEYKYI 62 (95)
T ss_pred EEEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEeCCCCeEEEEEE
Confidence 34778863 468752 1356778988888888999999995
No 80
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=22.95 E-value=2.9e+02 Score=19.86 Aligned_cols=46 Identities=20% Similarity=0.397 Sum_probs=25.3
Q ss_pred EEEeeecCCCCcEEEe-CccCCCCCCCCCCccccccC-CcEEEeeccccEEE
Q 039191 55 TLVFKYNKAMHDVRQV-SHEDFQSCNAKAPIEEYTTG-MDSITLKMAGHHYF 104 (220)
Q Consensus 55 tLvF~y~~~~HsV~~V-~~~~Y~~C~~s~pi~~~s~G-~~~v~L~~pG~~YF 104 (220)
.++|+|..+.+.|..+ +...++. ..++..-.+| ..++.|. +|.|.|
T Consensus 3 ~v~f~~~~~a~~V~v~G~F~~W~~---~~pm~~~~~~~~~~~~L~-~g~y~Y 50 (79)
T cd02859 3 PTTFVWPGGGKEVYVTGSFDNWKK---KIPLEKSGKGFSATLRLP-PGKYQY 50 (79)
T ss_pred EEEEEEcCCCcEEEEEEEcCCCCc---cccceECCCCcEEEEEcC-CCCEEE
Confidence 4789999887888777 4444543 2344333334 1233333 476444
No 81
>PRK10883 FtsI repressor; Provisional
Probab=22.71 E-value=2.3e+02 Score=27.50 Aligned_cols=73 Identities=11% Similarity=0.142 Sum_probs=41.9
Q ss_pred CeeeeCCEEEeeecCC--------CCcEEEeCccCCCCCCCCCCccccccCC---cEEEeec-cccEEEEcCCCC----C
Q 039191 48 KQFHVGDTLVFKYNKA--------MHDVRQVSHEDFQSCNAKAPIEEYTTGM---DSITLKM-AGHHYFLCGIPG----H 111 (220)
Q Consensus 48 ~tF~VGDtLvF~y~~~--------~HsV~~V~~~~Y~~C~~s~pi~~~s~G~---~~v~L~~-pG~~YFiCgv~~----H 111 (220)
.+++.||.|+.++.+. .|.+.+-.. ..+.. ..++ .-|. ..+++++ +|+|||=+...+ +
T Consensus 79 ir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~~~~-~~~g~--~~~I---~PG~~~~y~f~~~~~aGT~WYH~H~~~~t~~q 152 (471)
T PRK10883 79 IRVWKGDDVKLIYSNRLTEPVSMTVSGLQVPGP-LMGGP--ARMM---SPNADWAPVLPIRQNAATCWYHANTPNRMAQH 152 (471)
T ss_pred EEEECCCEEEEEEEeCCCCCCceeECCccCCCC-CCCCc--cccC---CCCCeEEEEEecCCCceeeEEccCCCCchhhh
Confidence 5789999999999764 244432221 11111 1122 2222 2455554 799999776433 4
Q ss_pred CCCCCeEEEEecCCC
Q 039191 112 CQVGQKVEINVLPGA 126 (220)
Q Consensus 112 C~~GmKl~I~V~~~~ 126 (220)
...|+.-.|.|....
T Consensus 153 v~~GL~G~lII~d~~ 167 (471)
T PRK10883 153 VYNGLAGMWLVEDEV 167 (471)
T ss_pred HhcCCeEEEEEeCCc
Confidence 557888888776543
No 82
>PRK10861 signal peptidase I; Provisional
Probab=22.65 E-value=2.8e+02 Score=25.97 Aligned_cols=16 Identities=38% Similarity=0.600 Sum_probs=12.2
Q ss_pred CeeeeCCEEEeeecCC
Q 039191 48 KQFHVGDTLVFKYNKA 63 (220)
Q Consensus 48 ~tF~VGDtLvF~y~~~ 63 (220)
.+.+.||.|+|++...
T Consensus 124 ~~p~RGDIVVF~~P~~ 139 (324)
T PRK10861 124 GHPKRGDIVVFKYPED 139 (324)
T ss_pred CCCCCCCEEEEecCCC
Confidence 4568899999988653
No 83
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.57 E-value=1e+02 Score=27.20 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=23.7
Q ss_pred EEEeeccccEEEEcCCCCCCCC---CCeEEEEecC
Q 039191 93 SITLKMAGHHYFLCGIPGHCQV---GQKVEINVLP 124 (220)
Q Consensus 93 ~v~L~~pG~~YFiCgv~~HC~~---GmKl~I~V~~ 124 (220)
.+..+++|.||..|.. -|.. .|++.|.|..
T Consensus 183 ~~~~~~~G~~~g~C~e--~CG~~Hs~M~~~v~vv~ 215 (228)
T MTH00076 183 SFIASRPGVYYGQCSE--ICGANHSFMPIVVEATP 215 (228)
T ss_pred EEEeCCcEEEEEEChh--hcCccccCCceEEEEeC
Confidence 4677899999999987 5654 4898888764
No 84
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.48 E-value=96 Score=27.44 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=23.9
Q ss_pred EEEeeccccEEEEcCCCCCCCCC---CeEEEEecC
Q 039191 93 SITLKMAGHHYFLCGIPGHCQVG---QKVEINVLP 124 (220)
Q Consensus 93 ~v~L~~pG~~YFiCgv~~HC~~G---mKl~I~V~~ 124 (220)
.++.+++|.||..|.. -|..| |++.|.|..
T Consensus 187 ~~~~~~~G~y~g~Cse--~CG~~Hs~M~i~v~vv~ 219 (234)
T MTH00051 187 SFFIKRPGVFYGQCSE--ICGANHSFMPIVIEGVS 219 (234)
T ss_pred EEEeCCCEEEEEEChh--hcCcccccCeeEEEEEC
Confidence 4678899999999986 66554 888888764
No 85
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=22.36 E-value=84 Score=23.71 Aligned_cols=39 Identities=21% Similarity=0.502 Sum_probs=28.8
Q ss_pred EEEecCC---CCceee-----CCCCcccccCCCeeeeCCEEEeeecC
Q 039191 24 TYTVGDD---AGWTIQ-----GHIDYSKWAEGKQFHVGDTLVFKYNK 62 (220)
Q Consensus 24 ~~~VGg~---~GW~~~-----~~~~Y~~WAs~~tF~VGDtLvF~y~~ 62 (220)
.|++|+. ..|... ...+|..|.....+..|..|.|||-.
T Consensus 18 l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~lp~~~~veyKyv~ 64 (97)
T cd05810 18 VYVVGNVPQLGNWSPADAVKLDPTAYPTWSGSISLPASTNVEWKCLK 64 (97)
T ss_pred EEEEEChHHhCCCChhhcccccCCCCCeEEEEEEcCCCCeEEEEEEE
Confidence 4788874 358852 13467889988889999999999853
No 86
>PF11604 CusF_Ec: Copper binding periplasmic protein CusF; InterPro: IPR021647 CusF is a periplasmic protein involved in copper and silver resistance in Escherichia coil. CusF forms a five-stranded beta-barrel OB fold. Cu(I) binds to H36, M47 and M49 which are conserved residues in the protein []. ; PDB: 2L55_A 2VB3_X 1ZEQ_X 2QCP_X 3E6Z_X 2VB2_X.
Probab=22.04 E-value=58 Score=23.37 Aligned_cols=25 Identities=12% Similarity=0.262 Sum_probs=15.6
Q ss_pred ccccCCCeeeeCCEEEeeecCCCCc
Q 039191 42 SKWAEGKQFHVGDTLVFKYNKAMHD 66 (220)
Q Consensus 42 ~~WAs~~tF~VGDtLvF~y~~~~Hs 66 (220)
.+.+.-..+++||.|.|.+......
T Consensus 35 ~~~~~l~~l~~Gd~V~F~~~~~~~~ 59 (70)
T PF11604_consen 35 ADPVDLAGLKPGDKVRFTFERTDDG 59 (70)
T ss_dssp -TTSEESS-STT-EEEEEEEEETTC
T ss_pred CChhhhhcCCCCCEEEEEEEECCCC
Confidence 3344446899999999999864333
No 87
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=21.26 E-value=1.7e+02 Score=25.08 Aligned_cols=56 Identities=16% Similarity=0.323 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhhhccceEEEecCCCCcee--eCCCCcccccCCCeeeeCCEEEeeec
Q 039191 5 KSVVVSLTIMALFGAAMAATYTVGDDAGWTI--QGHIDYSKWAEGKQFHVGDTLVFKYN 61 (220)
Q Consensus 5 ~~~~~~l~~~~l~~~a~A~~~~VGg~~GW~~--~~~~~Y~~WAs~~tF~VGDtLvF~y~ 61 (220)
++++++ +++++.+|+.......--..-|.+ .....|..|...-.|.-+|...-.+.
T Consensus 3 ~i~~l~-l~lll~~C~~~~~~~~~~~~~W~~~~~~P~~ypv~V~~~~~~~~~~~~~~~~ 60 (216)
T PF11153_consen 3 KILLLL-LLLLLTGCSTNPNEPLQPYFEWRFGVAAPKHYPVWVTYAYFVDGDGDWYRFP 60 (216)
T ss_pred HHHHHH-HHHHHHhhcCCCccCCCCCCccEEEEecCCCCEEEEEEEEEEeCCCcEEEEe
Confidence 333333 334444454444332223456887 34577888887777776666664444
No 88
>TIGR02227 sigpep_I_bact signal peptidase I, bacterial type. A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes.
Probab=21.10 E-value=4e+02 Score=21.72 Aligned_cols=14 Identities=36% Similarity=0.434 Sum_probs=10.7
Q ss_pred CeeeeCCEEEeeec
Q 039191 48 KQFHVGDTLVFKYN 61 (220)
Q Consensus 48 ~tF~VGDtLvF~y~ 61 (220)
...+.||.++|+..
T Consensus 50 ~~~~rGDiVvf~~~ 63 (163)
T TIGR02227 50 SDPKRGDIVVFKDP 63 (163)
T ss_pred CCCCCCcEEEEecC
Confidence 46778888888875
Done!