Query 039191
Match_columns 220
No_of_seqs 149 out of 874
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 11:56:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039191.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039191hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jer_A Cucumber stellacyanin; 100.0 6.6E-42 2.3E-46 278.1 5.7 108 21-128 2-112 (138)
2 1ws8_A Mavicyanin; oxidized fo 100.0 1.3E-40 4.5E-45 260.5 6.4 107 21-127 1-107 (109)
3 1x9u_A Umecyanin; cupredoxin, 100.0 4.6E-39 1.6E-43 254.3 7.2 105 23-127 2-108 (116)
4 2cbp_A Cucumber basic protein; 100.0 6.9E-38 2.4E-42 239.9 6.3 96 23-123 1-96 (96)
5 1f56_A Plantacyanin; cupredoxi 100.0 1E-33 3.6E-38 214.9 7.7 91 23-123 1-91 (91)
6 1qhq_A Protein (auracyanin); e 99.2 1.3E-11 4.3E-16 97.5 7.7 96 20-123 14-139 (140)
7 1bxv_A Plastocyanin; copper pr 99.1 9E-11 3.1E-15 85.2 6.6 85 24-123 4-91 (91)
8 2cal_A Rusticyanin; iron respi 99.1 1E-10 3.4E-15 95.2 6.3 76 47-123 62-154 (154)
9 1pmy_A Pseudoazurin; electron 98.9 6.5E-09 2.2E-13 81.7 9.4 83 28-125 11-95 (123)
10 1iuz_A Plastocyanin; electron 98.9 3.6E-09 1.2E-13 78.6 6.3 91 23-123 2-98 (98)
11 1paz_A Pseudoazurin precursor; 98.9 8.6E-09 2.9E-13 81.1 8.8 83 28-125 11-95 (123)
12 2aan_A Auracyanin A; cupredoxi 98.8 1.4E-08 4.9E-13 79.9 9.7 94 21-123 17-139 (139)
13 1plc_A Plastocyanin; electron 98.8 1.5E-08 5.2E-13 74.9 8.6 89 24-123 2-99 (99)
14 2gim_A Plastocyanin; beta shee 98.8 2.6E-08 8.8E-13 74.2 9.0 88 24-123 5-105 (106)
15 1b3i_A PETE protein, protein ( 98.7 4E-08 1.4E-12 72.2 8.5 88 24-123 4-97 (97)
16 1kdj_A Plastocyanin; electron 98.7 3.4E-08 1.2E-12 73.2 7.9 89 24-123 2-102 (102)
17 2plt_A Plastocyanin; electron 98.7 1.2E-08 4.3E-13 74.9 5.4 91 23-123 2-98 (98)
18 3erx_A Pseudoazurin; copper pr 98.7 2.9E-08 9.8E-13 78.3 7.8 73 46-125 21-95 (123)
19 1byp_A Protein (plastocyanin); 98.7 4.9E-08 1.7E-12 72.0 8.4 90 24-123 2-99 (99)
20 3tu6_A Pseudoazurin (blue copp 98.7 4E-08 1.4E-12 77.9 8.1 85 27-126 11-98 (127)
21 3ef4_A Pseudoazurin, blue copp 98.7 6.9E-08 2.4E-12 76.4 9.2 82 28-124 10-95 (124)
22 1pcs_A Plastocyanin; electron 98.5 2.6E-07 8.7E-12 68.0 7.6 90 24-123 4-98 (98)
23 2ux6_A Pseudoazurin; type-1 co 98.1 7.8E-06 2.7E-10 63.9 7.4 81 28-125 11-93 (122)
24 4hci_A Cupredoxin 1; structura 98.0 1.8E-06 6.1E-11 64.2 2.6 67 46-123 28-100 (100)
25 3c75_A Amicyanin; copper prote 98.0 1.7E-05 5.9E-10 62.4 7.7 70 47-123 61-132 (132)
26 3cvb_A Plastocyanin; cupredoxi 98.0 2E-05 6.9E-10 58.0 7.3 88 24-123 4-104 (105)
27 3ay2_A Lipid modified azurin p 97.9 1.8E-05 6.2E-10 65.5 7.3 92 23-123 43-166 (167)
28 1iko_P Ephrin-B2; greek KEY, g 97.9 3.7E-06 1.3E-10 70.7 2.5 80 49-128 25-144 (178)
29 1cuo_A Protein (azurin ISO-2); 97.8 5.9E-05 2E-09 59.6 8.4 91 24-123 4-128 (129)
30 2ov0_A Amicyanin; beta-sandwic 97.8 3.1E-05 1.1E-09 58.0 6.3 83 21-123 17-105 (105)
31 1id2_A Amicyanin; beta barrel, 97.8 5.2E-05 1.8E-09 57.1 6.8 66 47-123 35-106 (106)
32 2iaa_C Azurin; quinoprotein, t 97.7 0.00021 7.3E-09 56.4 9.4 89 24-123 3-127 (128)
33 2ccw_A Azurin II, AZN-2; elect 97.7 0.0002 6.9E-09 56.5 8.8 89 24-123 4-128 (129)
34 1nwp_A Azurin; electron transp 97.6 0.00017 5.7E-09 57.0 7.2 91 24-123 4-128 (128)
35 2x11_B Ephrin-A5; receptor-sig 97.3 0.0006 2.1E-08 57.2 7.3 77 48-127 52-165 (177)
36 3czu_B Ephrin-A1; ATP-binding, 97.2 0.0011 3.6E-08 55.9 7.7 76 48-126 50-162 (182)
37 1shx_A Ephrin-A5; ephrin signa 97.0 0.0015 5.2E-08 52.7 7.2 76 48-126 23-135 (138)
38 3d12_B Ephrin-B3; beta propell 97.0 0.00071 2.4E-08 54.8 4.6 76 48-123 22-140 (141)
39 1iby_A Nitrosocyanin; RED copp 96.7 0.0016 5.4E-08 48.8 4.5 66 47-123 39-111 (112)
40 2cua_A Protein (CUA); CUA cent 96.4 0.0066 2.3E-07 48.0 6.7 66 47-123 61-134 (135)
41 2wo3_B Ephrin-A2; transferase- 96.2 0.012 4E-07 48.4 7.1 76 48-126 32-145 (157)
42 2vsm_B Ephrin-B2; developmenta 96.1 0.007 2.4E-07 48.8 5.1 76 49-124 24-139 (140)
43 3fsa_A Azurin; copper, cupredo 95.7 0.076 2.6E-06 41.9 9.6 85 25-123 5-125 (125)
44 2dv6_A Nitrite reductase; elec 94.8 0.031 1.1E-06 50.9 5.3 77 46-126 55-134 (447)
45 3hei_B Ephrin-A1; EPH receptor 94.5 0.06 2E-06 43.1 5.6 73 48-123 22-131 (132)
46 3s8f_B Cytochrome C oxidase su 93.8 0.13 4.3E-06 42.4 6.4 69 46-123 93-167 (168)
47 1fwx_A Nitrous oxide reductase 92.0 0.15 5.1E-06 49.6 5.0 67 48-125 515-593 (595)
48 3sbq_A Nitrous-oxide reductase 90.9 0.22 7.7E-06 48.7 5.0 67 47-124 559-637 (638)
49 1mzy_A Copper-containing nitri 82.2 1.4 4.7E-05 38.6 4.6 75 48-125 66-153 (333)
50 1oe1_A Dissimilatory copper-co 79.8 1.8 6.1E-05 37.8 4.5 76 48-126 67-154 (336)
51 1kbv_A ANIA, major outer membr 74.1 2.6 8.8E-05 37.0 3.9 75 48-125 72-157 (327)
52 2bw4_A Copper-containing nitri 69.3 4.8 0.00016 35.1 4.5 75 48-125 73-159 (340)
53 2zoo_A Probable nitrite reduct 69.1 2.4 8.2E-05 38.4 2.6 75 48-125 62-147 (442)
54 1yel_A AT1G16640; CESG, protei 68.3 1.4 4.7E-05 32.6 0.7 21 43-63 71-91 (104)
55 4i1k_A B3 domain-containing tr 67.5 1.7 5.9E-05 34.5 1.1 28 43-70 110-137 (146)
56 3gdc_A Multicopper oxidase; be 65.4 6.6 0.00023 33.7 4.5 76 48-126 68-156 (288)
57 3l6w_A Hemocyanin 1; cupredoxi 65.3 4.1 0.00014 38.8 3.4 73 49-123 414-491 (491)
58 1oe1_A Dissimilatory copper-co 60.4 6.9 0.00024 34.0 3.8 34 93-126 286-320 (336)
59 1mzy_A Copper-containing nitri 56.8 5.3 0.00018 34.8 2.4 34 93-126 286-320 (333)
60 3kw8_A Laccase, putative coppe 56.3 11 0.00038 32.0 4.3 29 98-126 239-267 (276)
61 3gdc_A Multicopper oxidase; be 53.4 4.3 0.00015 34.9 1.2 32 93-124 257-288 (288)
62 2zwn_A Two-domain type laccase 51.7 13 0.00044 32.6 4.0 33 92-124 91-126 (339)
63 3hb3_B Cytochrome C oxidase su 49.6 12 0.00042 33.1 3.6 32 93-126 232-266 (298)
64 3cg8_A Laccase; oxidoreductase 49.0 18 0.00062 31.9 4.6 30 97-126 279-308 (343)
65 1cyx_A CYOA; electron transpor 48.6 12 0.00042 31.5 3.3 63 49-123 44-115 (205)
66 1sdd_A Coagulation factor V; c 47.9 2.3 8E-05 36.9 -1.4 33 93-125 269-301 (306)
67 2gsm_B Cytochrome C oxidase su 47.7 14 0.00049 31.9 3.6 30 93-124 214-246 (262)
68 1fft_B Ubiquinol oxidase; elec 47.6 30 0.001 30.9 5.7 83 25-123 130-225 (315)
69 2q9o_A Laccase-1; multicopper 47.4 18 0.00062 34.1 4.6 75 48-125 69-158 (559)
70 1zpu_A Iron transport multicop 45.2 28 0.00095 32.6 5.5 75 48-126 36-126 (534)
71 1v54_B Cytochrome C oxidase po 44.7 14 0.00047 31.3 3.0 30 93-124 183-215 (227)
72 3g5w_A Multicopper oxidase typ 44.2 15 0.00052 32.0 3.3 75 48-125 36-126 (318)
73 1v10_A Laccase; multicopper bl 44.0 21 0.00071 33.3 4.4 33 93-125 117-150 (521)
74 3sqr_A Laccase; multicopper ox 42.2 28 0.00097 33.3 5.1 34 92-125 155-188 (580)
75 2uxt_A Protein SUFI, SUFI; oxi 41.9 14 0.00049 33.7 2.9 74 48-125 52-139 (451)
76 1aoz_A Ascorbate oxidase; oxid 40.7 28 0.00095 32.6 4.7 76 48-126 36-125 (552)
77 2hzs_I RNA polymerase II media 35.9 1.1 3.9E-05 25.9 -3.5 19 47-65 4-22 (27)
78 3iuw_A Activating signal coint 34.7 15 0.00053 26.8 1.5 16 48-63 36-52 (83)
79 1wid_A DNA-binding protein RAV 34.1 10 0.00036 29.1 0.5 20 44-63 86-105 (130)
80 1kbv_A ANIA, major outer membr 33.9 22 0.00075 30.9 2.6 34 93-126 275-309 (327)
81 3t6v_A Laccase; beta barrel, o 32.4 47 0.0016 30.9 4.8 34 92-125 96-130 (495)
82 3pxl_A Laccase; 4-copper prote 31.9 48 0.0016 30.9 4.8 34 92-125 95-129 (499)
83 2j5w_A Ceruloplasmin, ferroxid 31.1 23 0.00078 36.2 2.6 76 47-126 633-719 (1065)
84 2z0t_A Putative uncharacterize 29.7 16 0.00054 27.9 0.8 11 48-58 32-42 (109)
85 2vb2_X Copper protein, cation 28.6 23 0.00077 25.7 1.5 20 44-63 56-75 (88)
86 2qcp_X Cation efflux system pr 28.4 23 0.00079 25.2 1.5 16 48-63 52-67 (80)
87 4dny_A Metalloprotease STCE; m 27.9 20 0.00069 28.2 1.2 46 52-108 77-122 (126)
88 1xne_A Hypothetical protein PF 27.1 16 0.00056 27.9 0.5 12 48-59 33-44 (113)
89 2zoo_A Probable nitrite reduct 26.6 35 0.0012 30.6 2.7 35 93-127 265-300 (442)
90 2bw4_A Copper-containing nitri 26.2 53 0.0018 28.3 3.8 34 93-126 292-326 (340)
91 3tas_A Small laccase, multi-co 26.1 90 0.0031 26.8 5.2 80 47-127 43-149 (313)
92 2r7e_B Coagulation factor VIII 25.4 39 0.0013 33.4 3.0 29 98-126 269-299 (770)
93 2l8d_A Lamin-B receptor; DNA b 25.2 77 0.0026 22.2 3.7 46 48-98 8-55 (66)
94 1sdd_B Coagulation factor V; c 24.8 28 0.00095 33.1 1.8 32 93-124 296-327 (647)
95 3aw5_A Multicopper oxidase; be 24.7 21 0.00073 32.6 0.9 75 48-126 40-128 (448)
96 2r7e_A Coagulation factor VIII 24.5 62 0.0021 31.8 4.2 34 93-126 298-331 (742)
97 2r7e_B Coagulation factor VIII 23.5 8.9 0.0003 38.0 -2.0 72 48-123 370-455 (770)
98 2dig_A Lamin-B receptor; tudor 23.1 87 0.003 22.1 3.6 46 48-98 11-58 (68)
99 3g5w_A Multicopper oxidase typ 23.1 66 0.0023 27.8 3.8 34 93-126 239-278 (318)
100 2k75_A Uncharacterized protein 22.8 40 0.0014 24.8 2.0 29 24-59 41-69 (106)
101 2xu9_A Laccase; oxidoreductase 22.7 1E+02 0.0035 27.7 5.1 76 49-124 50-135 (439)
102 3kw8_A Laccase, putative coppe 22.7 74 0.0025 26.8 3.9 28 99-126 109-142 (276)
103 1sdd_A Coagulation factor V; c 22.5 89 0.003 26.7 4.4 34 93-126 123-168 (306)
104 4he6_A Peptidase family U32; u 21.9 58 0.002 22.9 2.6 18 46-63 26-43 (89)
105 2kbn_A Conserved protein; nucl 21.0 76 0.0026 23.3 3.2 31 24-59 38-70 (109)
106 3zx1_A Oxidoreductase, putativ 20.4 55 0.0019 30.4 2.8 75 49-127 85-174 (481)
No 1
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=6.6e-42 Score=278.11 Aligned_cols=108 Identities=33% Similarity=0.699 Sum_probs=100.7
Q ss_pred cceEEEecCCCCceeeCC-CCcccccCCCeeeeCCEEEeeecCCCCcEEEe-CccCCCCCCCCCCccccccCCcEEEe-e
Q 039191 21 MAATYTVGDDAGWTIQGH-IDYSKWAEGKQFHVGDTLVFKYNKAMHDVRQV-SHEDFQSCNAKAPIEEYTTGMDSITL-K 97 (220)
Q Consensus 21 ~A~~~~VGg~~GW~~~~~-~~Y~~WAs~~tF~VGDtLvF~y~~~~HsV~~V-~~~~Y~~C~~s~pi~~~s~G~~~v~L-~ 97 (220)
+|++|+|||+.||++.+. .||++||++++|+|||+|+|+|..++|+|+|| ++++|+.|+.++++..+++|+++|+| +
T Consensus 2 ~a~~~~VGg~~GW~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V~~~~~y~~C~~s~p~~~~~~G~~~v~L~~ 81 (138)
T 1jer_A 2 QSTVHIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIERLD 81 (138)
T ss_dssp CCCEEETTGGGCSSCCSSTTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCCCCCSCEEEECC
T ss_pred CceEEEECCcCcCcCCCCccchhhhhcCCcCcCCCEEEEeecCCCceEEEeCchhhcCccCCCCccccccCCCeEEEecc
Confidence 578999999999999433 78999999999999999999999999999999 99999999999999999999999999 9
Q ss_pred ccccEEEEcCCCCCCCCCCeEEEEecCCCCC
Q 039191 98 MAGHHYFLCGIPGHCQVGQKVEINVLPGASS 128 (220)
Q Consensus 98 ~pG~~YFiCgv~~HC~~GmKl~I~V~~~~s~ 128 (220)
++|+|||||++++||++||||+|+|......
T Consensus 82 ~~G~~YFicg~~gHC~~GmKl~I~V~~~~~~ 112 (138)
T 1jer_A 82 ELGMHYFVCTVGTHCSNGQKLSINVVAANAT 112 (138)
T ss_dssp SSEEEEEECCSTTTGGGTCEEEEEEECCC--
T ss_pred CCcCEEEEcCCCCccccCCEEEEEEcCCCCC
Confidence 9999999999999999999999999977654
No 2
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A
Probab=100.00 E-value=1.3e-40 Score=260.46 Aligned_cols=107 Identities=58% Similarity=1.076 Sum_probs=99.5
Q ss_pred cceEEEecCCCCceeeCCCCcccccCCCeeeeCCEEEeeecCCCCcEEEeCccCCCCCCCCCCccccccCCcEEEeeccc
Q 039191 21 MAATYTVGDDAGWTIQGHIDYSKWAEGKQFHVGDTLVFKYNKAMHDVRQVSHEDFQSCNAKAPIEEYTTGMDSITLKMAG 100 (220)
Q Consensus 21 ~A~~~~VGg~~GW~~~~~~~Y~~WAs~~tF~VGDtLvF~y~~~~HsV~~V~~~~Y~~C~~s~pi~~~s~G~~~v~L~~pG 100 (220)
+|++|+|||+.||++.+..||++||++++|+|||+|+|+|.+++|+|+||++++|+.|+.++++..+++|+++|+|+++|
T Consensus 1 ~a~~~~VG~~~GW~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~y~~C~~~~p~~~~~~G~~~v~L~~~G 80 (109)
T 1ws8_A 1 MATVHKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKRPG 80 (109)
T ss_dssp CCCEEETTGGGCSCSSSCCCHHHHHHTSCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCSSCSEEECSSEEEEECCSSE
T ss_pred CCcEEEeCCCCCccCCCCcChhHhhcCCcCcCCCEEEEeecCCCceEEEEChHHCCcccCCCcccccCCCCEEEEECCCc
Confidence 47899999999999954589999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCCCCCCCeEEEEecCCCC
Q 039191 101 HHYFLCGIPGHCQVGQKVEINVLPGAS 127 (220)
Q Consensus 101 ~~YFiCgv~~HC~~GmKl~I~V~~~~s 127 (220)
++||||++++||++||||+|+|.+..+
T Consensus 81 ~~yFic~~~gHC~~GmKl~I~V~~~~s 107 (109)
T 1ws8_A 81 TFYFLCGIPGHCQLGQKVEIKVDPGSS 107 (109)
T ss_dssp EEEEECCSTTTTTTTCEEEEEECC---
T ss_pred CEEEECCCCCcccCCCEEEEEEcCCCC
Confidence 999999999999999999999986643
No 3
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=100.00 E-value=4.6e-39 Score=254.34 Aligned_cols=105 Identities=39% Similarity=0.759 Sum_probs=96.8
Q ss_pred eEEEecCCCCceee-CCCCcccccCCCeeeeCCEEEeeecCCCCcEEEeCccCCCCCCCCCCccccccCCcEEEeecccc
Q 039191 23 ATYTVGDDAGWTIQ-GHIDYSKWAEGKQFHVGDTLVFKYNKAMHDVRQVSHEDFQSCNAKAPIEEYTTGMDSITLKMAGH 101 (220)
Q Consensus 23 ~~~~VGg~~GW~~~-~~~~Y~~WAs~~tF~VGDtLvF~y~~~~HsV~~V~~~~Y~~C~~s~pi~~~s~G~~~v~L~~pG~ 101 (220)
++|+|||+.||++. ...+|++|+++++|+|||+|+|+|.++.|+|+||++++|+.|+.++++..+++|+++|+|+++|+
T Consensus 2 ~~~~VG~~~GW~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~HsV~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~ 81 (116)
T 1x9u_A 2 EDYDVGGDMEWKRPSDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPISHMTTPPVKIMLNTTGP 81 (116)
T ss_dssp CEEETTGGGCSSCCSSTTHHHHHHTTCCEETTCEEEECCCTTTCCEEEECHHHHHTTCCSSCSEEECSSSEEEECCSCEE
T ss_pred eEEEECCcCcCcCCCCCcchhhccccccCcCCCEEEEEecCCCCeEEEEChhhcCccCCCCCccccCCCCeEEEECCCCC
Confidence 57999999999984 35789999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCeEEE-EecCCCC
Q 039191 102 HYFLCGIPGHCQVGQKVEI-NVLPGAS 127 (220)
Q Consensus 102 ~YFiCgv~~HC~~GmKl~I-~V~~~~s 127 (220)
+||||++++||++||||+| +|....+
T Consensus 82 ~yFic~~~~HC~~Gmkl~In~V~~~~~ 108 (116)
T 1x9u_A 82 QYYICTVGDHCRVGQKLSINVVGAGGA 108 (116)
T ss_dssp EEEECCSTTTTTTTCEEEEEEECC---
T ss_pred EEEECCCCCccccCCEEEEEEECCCCC
Confidence 9999999999999999999 7765543
No 4
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=6.9e-38 Score=239.85 Aligned_cols=96 Identities=46% Similarity=0.968 Sum_probs=92.3
Q ss_pred eEEEecCCCCceeeCCCCcccccCCCeeeeCCEEEeeecCCCCcEEEeCccCCCCCCCCCCccccccCCcEEEeeccccE
Q 039191 23 ATYTVGDDAGWTIQGHIDYSKWAEGKQFHVGDTLVFKYNKAMHDVRQVSHEDFQSCNAKAPIEEYTTGMDSITLKMAGHH 102 (220)
Q Consensus 23 ~~~~VGg~~GW~~~~~~~Y~~WAs~~tF~VGDtLvF~y~~~~HsV~~V~~~~Y~~C~~s~pi~~~s~G~~~v~L~~pG~~ 102 (220)
++|+|||+.||++ +|++|+++++|++||+|+|+|.++.|+|+||++++|+.|+.++++..+++|+++|+| ++|++
T Consensus 1 ~~~~VG~~~GW~~----~y~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L-~~g~~ 75 (96)
T 2cbp_A 1 AVYVVGGSGGWTF----NTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKVYTSGRDQIKL-PKGQS 75 (96)
T ss_dssp CEEETTGGGCSCS----SCTTTTTTCCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCCTTCEEECSSEEEEEC-CSEEE
T ss_pred CEEEECCcCCCcc----ChhhhccCceEcCCCEEEEEecCCCCEEEEECHHHCCccCCCCCcccccCCCeEEEe-cCCCE
Confidence 4799999999997 699999999999999999999999999999999999999999999999999999999 89999
Q ss_pred EEEcCCCCCCCCCCeEEEEec
Q 039191 103 YFLCGIPGHCQVGQKVEINVL 123 (220)
Q Consensus 103 YFiCgv~~HC~~GmKl~I~V~ 123 (220)
||||++++||++||||+|+|+
T Consensus 76 yFic~~~~HC~~Gmkl~I~Vl 96 (96)
T 2cbp_A 76 YFICNFPGHCQSGMKIAVNAL 96 (96)
T ss_dssp EEECCSTTTGGGTCEEEEEEC
T ss_pred EEEcCCCCccccCCEEEEEEC
Confidence 999999999999999999995
No 5
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1
Probab=100.00 E-value=1e-33 Score=214.85 Aligned_cols=91 Identities=43% Similarity=0.863 Sum_probs=86.1
Q ss_pred eEEEecCCCCceeeCCCCcccccCCCeeeeCCEEEeeecCCCCcEEEeCccCCCCCCCCCCccccccCCcEEEeeccccE
Q 039191 23 ATYTVGDDAGWTIQGHIDYSKWAEGKQFHVGDTLVFKYNKAMHDVRQVSHEDFQSCNAKAPIEEYTTGMDSITLKMAGHH 102 (220)
Q Consensus 23 ~~~~VGg~~GW~~~~~~~Y~~WAs~~tF~VGDtLvF~y~~~~HsV~~V~~~~Y~~C~~s~pi~~~s~G~~~v~L~~pG~~ 102 (220)
++|+| ||++ + ++|+++++|++||+|+|+|.++.|+|+||++++|+.|+.++++..+++|+++|+|+ +|++
T Consensus 1 ~~y~V----gW~~--~---~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L~-~g~~ 70 (91)
T 1f56_A 1 AVYNI----GWSF--N---VNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLT-RGQN 70 (91)
T ss_dssp CEEEE----ECSS--S---CBSCTTCCBCTTCEEEEECCBTTBCEEEECHHHHHTTCCCTTCEEECSSEEEEECC-SEEE
T ss_pred CEEEE----eCCC--C---CcCcCCccEeCCCEEEEEccCCCCeEEEECHHHcCCcCCCCCcccccCCCcEEEeC-CCCe
Confidence 46899 8998 3 89999999999999999999989999999999999999999999999999999996 8999
Q ss_pred EEEcCCCCCCCCCCeEEEEec
Q 039191 103 YFLCGIPGHCQVGQKVEINVL 123 (220)
Q Consensus 103 YFiCgv~~HC~~GmKl~I~V~ 123 (220)
||||++++||++||||+|+|.
T Consensus 71 yFic~~~~HC~~Gmkl~I~v~ 91 (91)
T 1f56_A 71 YFICSFPGHCGGGMKIAINAK 91 (91)
T ss_dssp EEECCSTTTTTTTCEEEEEEC
T ss_pred EEEcCCCCccccCCEEEEEEC
Confidence 999999999999999999984
No 6
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=99.25 E-value=1.3e-11 Score=97.54 Aligned_cols=96 Identities=17% Similarity=0.266 Sum_probs=65.0
Q ss_pred ccceEEEecCC-CCceeeCCCCcccccCCCeeeeCCEEEeeecC-----CCCcEEEeCcc-CCCC--------------C
Q 039191 20 AMAATYTVGDD-AGWTIQGHIDYSKWAEGKQFHVGDTLVFKYNK-----AMHDVRQVSHE-DFQS--------------C 78 (220)
Q Consensus 20 a~A~~~~VGg~-~GW~~~~~~~Y~~WAs~~tF~VGDtLvF~y~~-----~~HsV~~V~~~-~Y~~--------------C 78 (220)
+...++.|+-. .+|.+.+ ...+++.||+|+|+|.+ ..|+++..+.. ++.. .
T Consensus 14 ~~~~~v~V~~~~~~~~F~P--------~~i~v~~G~tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (140)
T 1qhq_A 14 TPAQTVEVRAAPDALAFAQ--------TSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFV 85 (140)
T ss_dssp CCSEEEEEEBCSSSSSBSC--------SEEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTTC
T ss_pred CCCEEEEEEEeCCCceEeC--------CeEEECCCCEEEEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhccccccc
Confidence 34456777753 3588743 34689999999999865 46999887421 1110 0
Q ss_pred ---CCC------CCccccccCCcEEEeeccccEEEEcCCCCCCCCCCeEEEEec
Q 039191 79 ---NAK------APIEEYTTGMDSITLKMAGHHYFLCGIPGHCQVGQKVEINVL 123 (220)
Q Consensus 79 ---~~s------~pi~~~s~G~~~v~L~~pG~~YFiCgv~~HC~~GmKl~I~V~ 123 (220)
+.. ..+....++..+|+++++|.|||+|++.+||+.|||..|+|.
T Consensus 86 ~~~~~~~~~~~t~~l~pG~~~~~~~~~~~~G~y~f~C~~~~H~~~GM~g~i~V~ 139 (140)
T 1qhq_A 86 PPPDTPNALAWTAMLNAGESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTVT 139 (140)
T ss_dssp CCTTCTTEEEECCCBCTTEEEEEEEECCSSEEEEEECCSTTTTTTTCEEEEEEE
T ss_pred CccccccccccceeeCCCceeEEEEEeCCCeeEEEEeCCcCHhhcCCEEEEEEc
Confidence 000 011122233446888899999999999999999999999996
No 7
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=99.13 E-value=9e-11 Score=85.15 Aligned_cols=85 Identities=21% Similarity=0.286 Sum_probs=60.8
Q ss_pred EEEecCC-CCceeeCCCCcccccCCCeeeeCCEEEeeecC-CCCcEEEeCccCCCCCCCCCCccccccC-CcEEEeeccc
Q 039191 24 TYTVGDD-AGWTIQGHIDYSKWAEGKQFHVGDTLVFKYNK-AMHDVRQVSHEDFQSCNAKAPIEEYTTG-MDSITLKMAG 100 (220)
Q Consensus 24 ~~~VGg~-~GW~~~~~~~Y~~WAs~~tF~VGDtLvF~y~~-~~HsV~~V~~~~Y~~C~~s~pi~~~s~G-~~~v~L~~pG 100 (220)
+..||+. .+|.+.+ ...++++||+|+|++.. ..|+|.......+. ........| ...++++++|
T Consensus 4 ~v~~~~~~~~~~f~P--------~~i~v~~Gd~V~~~n~~~~~H~v~~~~~~~~~-----~~~~~~~~g~~~~~~f~~~G 70 (91)
T 1bxv_A 4 AIKMGADNGMLAFEP--------STIEIQAGDTVQWVNNKLAPHNVVVEGQPELS-----HKDLAFSPGETFEATFSEPG 70 (91)
T ss_dssp EEEESCTTSCSSEES--------SEEEECTTCEEEEEECSSCCEEEEETTCGGGC-----EEEEECSTTCEEEEECCSCE
T ss_pred EEEEecCCCccEEeC--------CEEEECCCCEEEEEECCCCCcEEEEeCCCccC-----cccceeCCCCEEEEEeCCCE
Confidence 4556653 4577754 34689999999999875 57999876533221 011123334 3578899999
Q ss_pred cEEEEcCCCCCCCCCCeEEEEec
Q 039191 101 HHYFLCGIPGHCQVGQKVEINVL 123 (220)
Q Consensus 101 ~~YFiCgv~~HC~~GmKl~I~V~ 123 (220)
.|+|+|. .||..||+..|.|.
T Consensus 71 ~y~~~C~--~H~~~gM~g~i~V~ 91 (91)
T 1bxv_A 71 TYTYYCE--PHRGAGMVGKIVVQ 91 (91)
T ss_dssp EEEEECT--TTGGGTCEEEEEEC
T ss_pred EEEEEeC--CCccCCCEEEEEEC
Confidence 9999999 79999999999984
No 8
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=99.09 E-value=1e-10 Score=95.22 Aligned_cols=76 Identities=21% Similarity=0.305 Sum_probs=58.3
Q ss_pred CCeeeeCCEEEeeecCC----CCcEEEeC-ccCCCCCCCCCCcccc-------ccC---Cc--EEEeeccccEEEEcCCC
Q 039191 47 GKQFHVGDTLVFKYNKA----MHDVRQVS-HEDFQSCNAKAPIEEY-------TTG---MD--SITLKMAGHHYFLCGIP 109 (220)
Q Consensus 47 ~~tF~VGDtLvF~y~~~----~HsV~~V~-~~~Y~~C~~s~pi~~~-------s~G---~~--~v~L~~pG~~YFiCgv~ 109 (220)
..+++.||+|+|++.+. .|++..++ ...|+.|.....+..+ ..| .. +|++ ++|.|||+|+++
T Consensus 62 ~i~V~~GD~V~~~~tN~~~~~~H~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~PG~sgt~t~tft~-~pGtY~y~C~~~ 140 (154)
T 2cal_A 62 TLEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHP-TAGTYYYVCQIP 140 (154)
T ss_dssp EEEECTTCEEEEEEEECCTTCCCCCEEESCCSCCCSSCCCCSEEEEBCCCCCCBTTBEEEEEEEECC-CSEEEEEECCST
T ss_pred EEEEeCCCEEEEEEEcCCCCeeeEEEEeecCcchhccccccccccccccccccCCCCceEEEEEEEE-CCceEEEECCCC
Confidence 35889999999999753 59999984 4578888765443211 222 23 4678 999999999999
Q ss_pred CCCCCCCeEEEEec
Q 039191 110 GHCQVGQKVEINVL 123 (220)
Q Consensus 110 ~HC~~GmKl~I~V~ 123 (220)
+||+.|||..|.|.
T Consensus 141 gH~~~GM~G~IiV~ 154 (154)
T 2cal_A 141 GMAATGMFGKIVVK 154 (154)
T ss_dssp TTGGGTCEEEEEEC
T ss_pred CHHHCCCEEEEEEC
Confidence 99999999999884
No 9
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1
Probab=98.90 E-value=6.5e-09 Score=81.73 Aligned_cols=83 Identities=17% Similarity=0.204 Sum_probs=58.6
Q ss_pred cCCCCceeeCCCCcccccCCCeeeeCCEEEeeecCCCCcEEEeCccCCCCCCCCCCcc-ccccCC-cEEEeeccccEEEE
Q 039191 28 GDDAGWTIQGHIDYSKWAEGKQFHVGDTLVFKYNKAMHDVRQVSHEDFQSCNAKAPIE-EYTTGM-DSITLKMAGHHYFL 105 (220)
Q Consensus 28 Gg~~GW~~~~~~~Y~~WAs~~tF~VGDtLvF~y~~~~HsV~~V~~~~Y~~C~~s~pi~-~~s~G~-~~v~L~~pG~~YFi 105 (220)
|++.++.+.+ ...++++||+|+|.+....|+|+... .|....... ....|. ..++++++|.|+|+
T Consensus 11 g~~g~~~F~P--------~~i~V~~GdtV~f~n~~~~H~v~~~~-----~~~p~~~~~~~~~pG~t~~~tF~~~G~y~y~ 77 (123)
T 1pmy_A 11 GPGGMMVFDP--------ALVRLKPGDSIKFLPTDKGHNVETIK-----GMAPDGADYVKTTVGQEAVVKFDKEGVYGFK 77 (123)
T ss_dssp ETTEEEEEES--------SEEEECTTCEEEEECSSSSCCCEECT-----TSSCTTCCCCBCCTTSCEEEECCSCEEEEEE
T ss_pred cCCCCceEeC--------CEEEECCCCEEEEEECCCCcEEEEec-----ccCCCCccceecCCCCEEEEEeCCCeEEEEE
Confidence 5444567655 34689999999999987789998752 122211110 111232 47899999999999
Q ss_pred cCCCCCCCCCCeEEEEecCC
Q 039191 106 CGIPGHCQVGQKVEINVLPG 125 (220)
Q Consensus 106 Cgv~~HC~~GmKl~I~V~~~ 125 (220)
|. .||..||+..|+|...
T Consensus 78 C~--~H~~~gM~G~I~V~~~ 95 (123)
T 1pmy_A 78 CA--PHYMMGMVALVVVGDK 95 (123)
T ss_dssp CS--TTTTTTCEEEEEESSC
T ss_pred eC--CccccCCEEEEEEcCC
Confidence 98 4999999999999854
No 10
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=98.86 E-value=3.6e-09 Score=78.58 Aligned_cols=91 Identities=16% Similarity=0.154 Sum_probs=61.0
Q ss_pred eEEEecC-CCCceeeCCCCcccccCCCeeeeCCEEEeeecC-CCCcEEEeCc---cCCCCCCCCCCccccccCC-cEEEe
Q 039191 23 ATYTVGD-DAGWTIQGHIDYSKWAEGKQFHVGDTLVFKYNK-AMHDVRQVSH---EDFQSCNAKAPIEEYTTGM-DSITL 96 (220)
Q Consensus 23 ~~~~VGg-~~GW~~~~~~~Y~~WAs~~tF~VGDtLvF~y~~-~~HsV~~V~~---~~Y~~C~~s~pi~~~s~G~-~~v~L 96 (220)
.+.++|+ +.++.+.+ +..++++||+|+|.+.. ..|+|...+. +.++.+...........|. ..+++
T Consensus 2 ~~V~m~~~~~~~~F~P--------~~i~v~~GdtV~~~n~~~~~H~v~~~~~~~p~g~~~~~~~~~~~~~~~g~~~~~tf 73 (98)
T 1iuz_A 2 QIVKLGGDDGSLAFVP--------SKISVAAGEAIEFVNNAGFPHNIVFDEDAVPAGVDADAISYDDYLNSKGETVVRKL 73 (98)
T ss_dssp EEEEESCTTSCCSEES--------SEEEECTTCEEEEEECSSCCEEEEECTTSSCTTCCHHHHCEEEEECSTTCEEEEEC
T ss_pred EEEEEecCCCCcEEeC--------CEEEECCCCEEEEEECCCCCEEEEEeCCCCccccccccccccccccCCCCEEEEEc
Confidence 3455665 34677755 34689999999999876 3799986532 1222221111101233444 36889
Q ss_pred eccccEEEEcCCCCCCCCCCeEEEEec
Q 039191 97 KMAGHHYFLCGIPGHCQVGQKVEINVL 123 (220)
Q Consensus 97 ~~pG~~YFiCgv~~HC~~GmKl~I~V~ 123 (220)
+++|.|+|+|.. ||+.||+..|.|.
T Consensus 74 ~~~G~y~y~C~~--H~~~gM~G~I~V~ 98 (98)
T 1iuz_A 74 STPGVYGVYCEP--HAGAGMKMTITVQ 98 (98)
T ss_dssp CSCEEEEEECTT--TGGGTCEEEEEEC
T ss_pred CCCEEEEEEchh--hccCCCEEEEEEC
Confidence 999999999996 9999999999884
No 11
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*
Probab=98.86 E-value=8.6e-09 Score=81.05 Aligned_cols=83 Identities=17% Similarity=0.194 Sum_probs=58.2
Q ss_pred cCCCCceeeCCCCcccccCCCeeeeCCEEEeeecCCCCcEEEeCccCCCCCCCCCCcc-ccccCC-cEEEeeccccEEEE
Q 039191 28 GDDAGWTIQGHIDYSKWAEGKQFHVGDTLVFKYNKAMHDVRQVSHEDFQSCNAKAPIE-EYTTGM-DSITLKMAGHHYFL 105 (220)
Q Consensus 28 Gg~~GW~~~~~~~Y~~WAs~~tF~VGDtLvF~y~~~~HsV~~V~~~~Y~~C~~s~pi~-~~s~G~-~~v~L~~pG~~YFi 105 (220)
|++.++.+.+ ...++++||+|+|.+....|+|+... .|...+... ....|. ..++++++|.|+|+
T Consensus 11 g~~g~~~F~P--------~~i~V~~GdtV~f~~~~~~H~v~~~~-----~~~p~~~~~~~~~pG~t~~~tF~~~G~y~y~ 77 (123)
T 1paz_A 11 GAEGAMVFEP--------AYIKANPGDTVTFIPVDKGHNVESIK-----DMIPEGAEKFKSKINENYVLTVTQPGAYLVK 77 (123)
T ss_dssp ETTEEEEEES--------SEEEECTTCEEEEEESSSSCCCEECT-----TCSCTTCCCCBCCTTCCEEEECCSCEEEEEE
T ss_pred cCCCCceEeC--------CEEEECCCCEEEEEECCCCeEEEEec-----ccCCCCccceecCCCCEEEEEeCCCEEEEEE
Confidence 5544567655 34689999999999987779998641 122111100 111232 47899999999999
Q ss_pred cCCCCCCCCCCeEEEEecCC
Q 039191 106 CGIPGHCQVGQKVEINVLPG 125 (220)
Q Consensus 106 Cgv~~HC~~GmKl~I~V~~~ 125 (220)
|. .||..||+..|+|...
T Consensus 78 C~--~H~~~gM~G~I~V~~~ 95 (123)
T 1paz_A 78 CT--PHYAMGMIALIAVGDS 95 (123)
T ss_dssp CT--TTGGGTCEEEEEESSS
T ss_pred eC--CcccCCCEEEEEEcCC
Confidence 98 4999999999999753
No 12
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=98.85 E-value=1.4e-08 Score=79.94 Aligned_cols=94 Identities=16% Similarity=0.265 Sum_probs=63.0
Q ss_pred cceEEEecC-CCCceeeCCCCcccccCCCeeeeCCEEEeeecCC----CCcEEEeCcc------------------CCCC
Q 039191 21 MAATYTVGD-DAGWTIQGHIDYSKWAEGKQFHVGDTLVFKYNKA----MHDVRQVSHE------------------DFQS 77 (220)
Q Consensus 21 ~A~~~~VGg-~~GW~~~~~~~Y~~WAs~~tF~VGDtLvF~y~~~----~HsV~~V~~~------------------~Y~~ 77 (220)
...++.||. ..++.+.+ ...+++.||+|+|+|.+. .|++...... +|..
T Consensus 17 ~~~~V~v~~~~~~~~F~p--------~~i~v~~G~~V~~~~~N~~~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~~~p 88 (139)
T 2aan_A 17 GPVTIEIGSKGEELAFDK--------TELTVSAGQTVTIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAANYLP 88 (139)
T ss_dssp CCEEEEEEBCTTSSSBSC--------SEEEECTTCEEEEEEECCCSSCCBCCEEESSCHHHHHHHHHHHHHHCGGGTTCC
T ss_pred cCEEEEEEecCCccEEcC--------CeEEECCCCEEEEEEEeCCCCCCeeEEEeccccccchhhhhhhhcccccccccC
Confidence 344566742 23566633 346899999999988653 6999887532 5666
Q ss_pred CCCCCCc---cccccCC-cEEE--eeccccEEEEcCCCCCCCCCCeEEEEec
Q 039191 78 CNAKAPI---EEYTTGM-DSIT--LKMAGHHYFLCGIPGHCQVGQKVEINVL 123 (220)
Q Consensus 78 C~~s~pi---~~~s~G~-~~v~--L~~pG~~YFiCgv~~HC~~GmKl~I~V~ 123 (220)
|+..+.+ ..+..|. ..++ ++++|.|+|+|.+.+||+ ||+..|.|.
T Consensus 89 ~~~~~~~~~t~~l~pGet~~v~f~~~~pG~y~f~C~~~~H~~-GM~G~i~V~ 139 (139)
T 2aan_A 89 ADKSNIIAESPLANGNETVEVTFTAPAAGTYLYICTVPGHYP-LMQGKLVVN 139 (139)
T ss_dssp SCCTTEEEECCCBCTTCEEEEEEECCSSEEEEEECCSTTTTT-TSEEEEEEC
T ss_pred cccccccccccccCCCCEEEEEEECCCCeEEEEEcCCCChHH-cCEEEEEEC
Confidence 6533211 1233343 2444 448999999999999999 999999884
No 13
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=98.82 E-value=1.5e-08 Score=74.90 Aligned_cols=89 Identities=18% Similarity=0.268 Sum_probs=60.0
Q ss_pred EEEecCC-CCceeeCCCCcccccCCCeeeeCCEEEeeecCC-CCcEEEeCcc---CCCCCCC---CCCccccccCC-cEE
Q 039191 24 TYTVGDD-AGWTIQGHIDYSKWAEGKQFHVGDTLVFKYNKA-MHDVRQVSHE---DFQSCNA---KAPIEEYTTGM-DSI 94 (220)
Q Consensus 24 ~~~VGg~-~GW~~~~~~~Y~~WAs~~tF~VGDtLvF~y~~~-~HsV~~V~~~---~Y~~C~~---s~pi~~~s~G~-~~v 94 (220)
+.++|++ .++.+.+ +..++++||+|+|++... .|+|...+.. ..+.+.. .+.+ ....|. ..+
T Consensus 2 ~v~m~~~~~~~~F~P--------~~i~v~~G~tV~~~n~~~~~H~v~~~~~~~p~~~~~~~~~~~~~~~-~~~~G~~~~~ 72 (99)
T 1plc_A 2 DVLLGADDGSLAFVP--------SEFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDL-LNAKGETFEV 72 (99)
T ss_dssp EEEESCTTCCSCEES--------SEEEECTTCEEEEEECSSCCBCCEECTTSSCTTCCHHHHCCCTTCC-BCSTTCEEEE
T ss_pred EEEEecCCCcceEeC--------CEEEECCCCEEEEEECCCCceEEEEeCCCCcccccccccccccCcc-ccCCCCEEEE
Confidence 3566653 4566644 346899999999988764 7999876431 1121110 0111 223343 468
Q ss_pred EeeccccEEEEcCCCCCCCCCCeEEEEec
Q 039191 95 TLKMAGHHYFLCGIPGHCQVGQKVEINVL 123 (220)
Q Consensus 95 ~L~~pG~~YFiCgv~~HC~~GmKl~I~V~ 123 (220)
+++++|.|+|+|. .||+.||+..|+|.
T Consensus 73 tf~~~G~y~~~C~--~H~~~gM~G~i~V~ 99 (99)
T 1plc_A 73 ALSNKGEYSFYCS--PHQGAGMVGKVTVN 99 (99)
T ss_dssp ECCSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred EECCCceEEEEcC--CCcccCCEEEEEEC
Confidence 9999999999999 79999999999984
No 14
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=98.79 E-value=2.6e-08 Score=74.22 Aligned_cols=88 Identities=25% Similarity=0.274 Sum_probs=59.3
Q ss_pred EEEecCC-CCceeeCCCCcccccCCCeeeeCCEEEeeecC-CCCcEEEeCccCCC-----C--CCCCCCccccccC-CcE
Q 039191 24 TYTVGDD-AGWTIQGHIDYSKWAEGKQFHVGDTLVFKYNK-AMHDVRQVSHEDFQ-----S--CNAKAPIEEYTTG-MDS 93 (220)
Q Consensus 24 ~~~VGg~-~GW~~~~~~~Y~~WAs~~tF~VGDtLvF~y~~-~~HsV~~V~~~~Y~-----~--C~~s~pi~~~s~G-~~~ 93 (220)
+..||.+ .++.+.+ ...++++||+|+|.+.. ..|+|...+....+ . +.. +.. ....| ...
T Consensus 5 ~V~~~~~~~~~~F~P--------~~i~v~~Gd~V~~~n~~~~~H~~~~~~~~~~~~~g~~~~~~~~-~~~-~~~pG~~~~ 74 (106)
T 2gim_A 5 TVKLGSDKGLLVFEP--------AKLTIKPGDTVEFLNNKVPPHNVVFDAALNPAKSADLAKSLSH-KQL-LMSPGQSTS 74 (106)
T ss_dssp EEEESCTTCCSSEES--------SEEEECTTCEEEEEECSSSCCCBEECSSSSTTCCHHHHHHHCB-CSC-CCSTTCEEE
T ss_pred EEEEEecCCcceEcC--------CEEEECCCCEEEEEECCCCCceEEEeCCCCcccccccchhccc-cce-eeCCCCEEE
Confidence 4567643 5677754 34689999999999765 46999865322110 0 001 111 12333 346
Q ss_pred EEe---eccccEEEEcCCCCCCCCCCeEEEEec
Q 039191 94 ITL---KMAGHHYFLCGIPGHCQVGQKVEINVL 123 (220)
Q Consensus 94 v~L---~~pG~~YFiCgv~~HC~~GmKl~I~V~ 123 (220)
+++ +++|.|+|+|. .||+.||+..|+|.
T Consensus 75 ~~f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~ 105 (106)
T 2gim_A 75 TTFPADAPAGEYTFYCE--PHRGAGMVGKITVA 105 (106)
T ss_dssp EECCTTCCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred EEEecCCCCceEEEEeC--ChhhcCcEEEEEEc
Confidence 788 89999999999 89999999999985
No 15
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=98.74 E-value=4e-08 Score=72.22 Aligned_cols=88 Identities=24% Similarity=0.274 Sum_probs=59.3
Q ss_pred EEEecCC-CCceeeCCCCcccccCCCeeeeCCEEEeeecC-CCCcEEEeCccC---CCCCCCCCCccccccC-CcEEEee
Q 039191 24 TYTVGDD-AGWTIQGHIDYSKWAEGKQFHVGDTLVFKYNK-AMHDVRQVSHED---FQSCNAKAPIEEYTTG-MDSITLK 97 (220)
Q Consensus 24 ~~~VGg~-~GW~~~~~~~Y~~WAs~~tF~VGDtLvF~y~~-~~HsV~~V~~~~---Y~~C~~s~pi~~~s~G-~~~v~L~ 97 (220)
+.++|++ .++.+.+ ...+++.||+|+|.+.. ..|+|...+... .+.+.... . ....| ...++++
T Consensus 4 ~V~~~~~~~~~~F~P--------~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~~~tf~ 73 (97)
T 1b3i_A 4 QIKMGTDKYAPLYEP--------KALSISAGDTVEFVMNKVGPHNVIFDKVPAGESAPALSNTK-L-AIAPGSFYSVTLG 73 (97)
T ss_dssp EEEEEETTTEEEEES--------SEEEECTTCEEEEEECSSCCCCBEEEECCTTSCHHHHCBCC-C-CCSCSCCEEEECC
T ss_pred EEEEeccCCccEEeC--------CEEEECCCCEEEEEECCCCCeEEEEeCCCCccccccccccc-e-ecCCCCEEEEEeC
Confidence 4556643 5577644 33689999999999876 369998763221 00111111 1 12233 3578899
Q ss_pred ccccEEEEcCCCCCCCCCCeEEEEec
Q 039191 98 MAGHHYFLCGIPGHCQVGQKVEINVL 123 (220)
Q Consensus 98 ~pG~~YFiCgv~~HC~~GmKl~I~V~ 123 (220)
++|.|+|+|. .||+.||+..|.|.
T Consensus 74 ~~G~y~y~C~--~H~~~gM~G~i~V~ 97 (97)
T 1b3i_A 74 TPGTYSFYCT--PHRGAGMVGTITVE 97 (97)
T ss_dssp SCSEEEEECS--STTTTTCEEEEEEC
T ss_pred CCeEEEEEcc--ChhhcCCEEEEEEC
Confidence 9999999999 89999999999884
No 16
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=98.73 E-value=3.4e-08 Score=73.24 Aligned_cols=89 Identities=15% Similarity=0.155 Sum_probs=60.0
Q ss_pred EEEecCC-CCceeeCCCCcccccCCCeeeeCCEEEeeecC-CCCcEEEeCccCCC----CCCCC-----CCccccccC-C
Q 039191 24 TYTVGDD-AGWTIQGHIDYSKWAEGKQFHVGDTLVFKYNK-AMHDVRQVSHEDFQ----SCNAK-----APIEEYTTG-M 91 (220)
Q Consensus 24 ~~~VGg~-~GW~~~~~~~Y~~WAs~~tF~VGDtLvF~y~~-~~HsV~~V~~~~Y~----~C~~s-----~pi~~~s~G-~ 91 (220)
+.+||.. .++.+.+ ...++++||+|+|.+.. ..|+|...+.+.++ .|... +.. ....| .
T Consensus 2 ~V~~g~~~~~~~F~P--------~~i~v~~G~tV~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pG~~ 72 (102)
T 1kdj_A 2 KVEVGDEVGNFKFYP--------DSITVSAGEAVEFTLVGETGHNIVFDIPAGAPGTVASELKAASMDENDL-LSEDEPS 72 (102)
T ss_dssp EEEESCTTCCCCEES--------SEEEECTTCCEEEEECSSSCBCCEECCCTTCCHHHHHHHHHTSCCTTCC-BBTTBCE
T ss_pred EEEEecCCCccEEeC--------CEEEECCCCEEEEEECCCCCeEEEEeCcccccccccchhhcccccccce-ecCCCCE
Confidence 4567753 4566644 33689999999999765 36999876433321 11100 111 12334 3
Q ss_pred cEEEeeccccEEEEcCCCCCCCCCCeEEEEec
Q 039191 92 DSITLKMAGHHYFLCGIPGHCQVGQKVEINVL 123 (220)
Q Consensus 92 ~~v~L~~pG~~YFiCgv~~HC~~GmKl~I~V~ 123 (220)
..++++++|.|+|+|. .||+.||+..|.|.
T Consensus 73 ~~~tf~~~G~y~y~C~--~H~~~gM~G~i~V~ 102 (102)
T 1kdj_A 73 FKAKVSTPGTYTFYCT--PHKSANMKGTLTVK 102 (102)
T ss_dssp EEECCCSCEEEEEECS--TTGGGTCEEEEEEC
T ss_pred EEEEeCCCeEEEEEeC--CCcccCCeEEEEEC
Confidence 4688899999999999 89999999999884
No 17
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=98.73 E-value=1.2e-08 Score=74.95 Aligned_cols=91 Identities=21% Similarity=0.210 Sum_probs=60.3
Q ss_pred eEEEecCC-CCceeeCCCCcccccCCCeeeeCCEEEeeecCC-CCcEEEeCc---cCCCCCCCCCCccccccCC-cEEEe
Q 039191 23 ATYTVGDD-AGWTIQGHIDYSKWAEGKQFHVGDTLVFKYNKA-MHDVRQVSH---EDFQSCNAKAPIEEYTTGM-DSITL 96 (220)
Q Consensus 23 ~~~~VGg~-~GW~~~~~~~Y~~WAs~~tF~VGDtLvF~y~~~-~HsV~~V~~---~~Y~~C~~s~pi~~~s~G~-~~v~L 96 (220)
.+.++|+. .++.+.+ ...++++||+|+|++... .|+|...+. +.++.+...........|. ..+++
T Consensus 2 ~~V~m~~~~~~~~F~P--------~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~p~~~~~~~~~~~~~~~~pG~~~~~tf 73 (98)
T 2plt_A 2 ATVKLGADSGALEFVP--------KTLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAISRDDYLNAPGETYSVKL 73 (98)
T ss_dssp EEEEESCTTCCSSEES--------SEEEECTTCEEEEEECSSCCEEEEECGGGSCTTCCHHHHCEEEEECSTTCEEEEEC
T ss_pred EEEEEecCCCCceEeC--------CEEEECCCCEEEEEECCCCceEEEEeCCCCCCccccccccccceecCCCCEEEEEe
Confidence 45667643 4577644 236899999999988764 699986532 1222211110011223343 36889
Q ss_pred eccccEEEEcCCCCCCCCCCeEEEEec
Q 039191 97 KMAGHHYFLCGIPGHCQVGQKVEINVL 123 (220)
Q Consensus 97 ~~pG~~YFiCgv~~HC~~GmKl~I~V~ 123 (220)
+++|.|.|+|. .||+.||+..|.|.
T Consensus 74 ~~~G~y~y~C~--~H~~~gM~G~i~V~ 98 (98)
T 2plt_A 74 TAAGEYGYYCE--PHQGAGMVGKIIVQ 98 (98)
T ss_dssp CSCEEEEEECG--GGGGGTCEEEEEEC
T ss_pred CCCeEEEEEcC--CccccCCeEEEEEC
Confidence 99999999999 79999999999884
No 18
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=98.72 E-value=2.9e-08 Score=78.27 Aligned_cols=73 Identities=15% Similarity=0.136 Sum_probs=53.6
Q ss_pred CCCeeeeCCEEEeeecCCCCcEEEeCccCCCCCCCCCC--ccccccCCcEEEeeccccEEEEcCCCCCCCCCCeEEEEec
Q 039191 46 EGKQFHVGDTLVFKYNKAMHDVRQVSHEDFQSCNAKAP--IEEYTTGMDSITLKMAGHHYFLCGIPGHCQVGQKVEINVL 123 (220)
Q Consensus 46 s~~tF~VGDtLvF~y~~~~HsV~~V~~~~Y~~C~~s~p--i~~~s~G~~~v~L~~pG~~YFiCgv~~HC~~GmKl~I~V~ 123 (220)
+..++++||+|+|.+....|+|...+. |...+. ...-.+....++++++|.|+|+|. .||..||+-.|+|.
T Consensus 21 ~~i~V~~GdtV~f~~~~~~H~v~~~~~-----~~P~g~~~f~~~pg~t~s~TF~~pG~y~y~C~--~H~~~GM~G~I~V~ 93 (123)
T 3erx_A 21 AFVRAEPGDVINFVPTDKSHNVEAIKE-----ILPEGVESFKSKINESYTLTVTEPGLYGVKCT--PHFGMGMVGLVQVG 93 (123)
T ss_dssp SEEEECTTEEEEEEESSTTCCCEECTT-----SSCTTCCCCBCCTTCCEEEEECSCEEEEEECG--GGTTTTCEEEEEES
T ss_pred CEEEECCCCEEEEEECCCCceEEEcCC-----cCCCCccceecCCCCEEEEEeCCCeEEEEEeC--CCCcCCcEEEEEEC
Confidence 346999999999999877799986421 222111 111112235789999999999999 69999999999998
Q ss_pred CC
Q 039191 124 PG 125 (220)
Q Consensus 124 ~~ 125 (220)
..
T Consensus 94 ~~ 95 (123)
T 3erx_A 94 DA 95 (123)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 19
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=98.72 E-value=4.9e-08 Score=72.00 Aligned_cols=90 Identities=21% Similarity=0.258 Sum_probs=59.8
Q ss_pred EEEecC-CCCceeeCCCCcccccCCCeeeeCCEEEeeecCC-CCcEEEeCcc---CCCCCCCC--CCccccccCC-cEEE
Q 039191 24 TYTVGD-DAGWTIQGHIDYSKWAEGKQFHVGDTLVFKYNKA-MHDVRQVSHE---DFQSCNAK--APIEEYTTGM-DSIT 95 (220)
Q Consensus 24 ~~~VGg-~~GW~~~~~~~Y~~WAs~~tF~VGDtLvF~y~~~-~HsV~~V~~~---~Y~~C~~s--~pi~~~s~G~-~~v~ 95 (220)
+.+||+ ..++.+.+ +..+++.||+|+|++... .|+|...+.. .++.+... ........|. ..++
T Consensus 2 ~V~~~~~~~~~~F~P--------~~i~v~~G~tV~~~n~~~~~H~~~~~~~~~p~g~~~~~~~~~~~~~~~~~G~~~~~~ 73 (99)
T 1byp_A 2 EVLLGSSDGGLAFVP--------SDLSIASGEKITFKNNAGFPHNDLFDKKEVPAGVDVTKISMPEEDLLNAPGEEYSVT 73 (99)
T ss_dssp EEEESCTTSCCSEES--------SEEEECTTEEEEEEECSSCCBCCEECTTSSCTTCCHHHHSCCTTCCBCSTTCEEEEE
T ss_pred EEEEecCCCcceEeC--------CEEEECCCCEEEEEECCCCcceEEEeCCCCccccccccccccccceeeCCCCEEEEE
Confidence 456664 44566644 236899999999988764 6999876421 12222110 0001223343 4688
Q ss_pred eeccccEEEEcCCCCCCCCCCeEEEEec
Q 039191 96 LKMAGHHYFLCGIPGHCQVGQKVEINVL 123 (220)
Q Consensus 96 L~~pG~~YFiCgv~~HC~~GmKl~I~V~ 123 (220)
++++|.|.|+|. .||+.||+..|+|.
T Consensus 74 f~~~G~y~~~C~--~H~~~gM~G~i~V~ 99 (99)
T 1byp_A 74 LTEKGTYKFYCA--PHAGAGMVGKVTVN 99 (99)
T ss_dssp ECSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred eCCCcEEEEEcC--CccccCCEEEEEEC
Confidence 999999999999 79999999999884
No 20
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}
Probab=98.70 E-value=4e-08 Score=77.89 Aligned_cols=85 Identities=18% Similarity=0.131 Sum_probs=59.8
Q ss_pred ecCCC-CceeeCCCCcccccCCCeeeeCCEEEeeecCCCCcEEEeCccCCCCCCCCCCccc-cccC-CcEEEeeccccEE
Q 039191 27 VGDDA-GWTIQGHIDYSKWAEGKQFHVGDTLVFKYNKAMHDVRQVSHEDFQSCNAKAPIEE-YTTG-MDSITLKMAGHHY 103 (220)
Q Consensus 27 VGg~~-GW~~~~~~~Y~~WAs~~tF~VGDtLvF~y~~~~HsV~~V~~~~Y~~C~~s~pi~~-~s~G-~~~v~L~~pG~~Y 103 (220)
+|.+. +..+.| +..++++||+|+|.+....|+|...+. +........ ..-| ...++++++|.|+
T Consensus 11 ~g~~g~~~~F~P--------~~i~V~~GDtVtf~n~~~~H~v~~~~~-----~~P~g~~~f~s~pGet~s~TF~~pG~y~ 77 (127)
T 3tu6_A 11 KAADGRVMAFEP--------AVIRAQPGDTVTFVAKDKGHNSALMKG-----GAPEGAETWKGKINEEITVTLSKPGVYM 77 (127)
T ss_dssp ECTTSCEEEEES--------SEEEECTTCEEEEECSSSSCCCEECTT-----CSCTTCCCCBCCTTCCCEEECCSCEEEE
T ss_pred cCCCCcccEEeC--------CEEEECCCCEEEEEECCCCceEEEccC-----cCCCCccceecCCCCEEEEEeCCCeEEE
Confidence 35443 477755 346999999999999877799986532 111111000 0112 3579999999999
Q ss_pred EEcCCCCCCCCCCeEEEEecCCC
Q 039191 104 FLCGIPGHCQVGQKVEINVLPGA 126 (220)
Q Consensus 104 FiCgv~~HC~~GmKl~I~V~~~~ 126 (220)
|+|. .||..||+..|.|....
T Consensus 78 y~C~--~H~~~GM~G~I~V~~~~ 98 (127)
T 3tu6_A 78 YQCA--PHVGMGMIGAIVVGEPA 98 (127)
T ss_dssp EECT--TTGGGTCEEEEEESSCT
T ss_pred EEeC--CCCcCCcEEEEEECcCC
Confidence 9999 59999999999998643
No 21
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0
Probab=98.70 E-value=6.9e-08 Score=76.44 Aligned_cols=82 Identities=21% Similarity=0.201 Sum_probs=59.6
Q ss_pred cCCCC--ceeeCCCCcccccCCCeeeeCCEEEeeecCCCCcEEEeCccCCCCCCCCCCcc-ccccC-CcEEEeeccccEE
Q 039191 28 GDDAG--WTIQGHIDYSKWAEGKQFHVGDTLVFKYNKAMHDVRQVSHEDFQSCNAKAPIE-EYTTG-MDSITLKMAGHHY 103 (220)
Q Consensus 28 Gg~~G--W~~~~~~~Y~~WAs~~tF~VGDtLvF~y~~~~HsV~~V~~~~Y~~C~~s~pi~-~~s~G-~~~v~L~~pG~~Y 103 (220)
+|++| +.+.| +..++++||+|+|.+....|+|...+. +...+... ....| ..+++++++|.|.
T Consensus 10 ~g~~G~~~~F~P--------~~i~V~~GDTV~f~n~~~~Hnv~~~~~-----~~p~g~~~~~~~pg~t~s~TF~~~G~y~ 76 (124)
T 3ef4_A 10 KDDAGNTMVFQP--------GFVKVEAGDTVKFVPTDKSHNAESVRE-----VWPEGVAPVKGGFSKEVVFNAEKEGLYV 76 (124)
T ss_dssp ECTTSCEEEEES--------SEEEECTTCEEEEECSSSSCCCEECTT-----TSCTTSCCCBCCTTCCEEEECCSSEEEE
T ss_pred cCCCCceeEEeC--------CEEEECCCCEEEEEECCCCccEEEeCC-----cCCCCccccccCCCCEEEEEeCCCeEEE
Confidence 34455 88865 347999999999999887899987532 22222111 11223 3578999999999
Q ss_pred EEcCCCCCCCCCCeEEEEecC
Q 039191 104 FLCGIPGHCQVGQKVEINVLP 124 (220)
Q Consensus 104 FiCgv~~HC~~GmKl~I~V~~ 124 (220)
|+|. .||..||+-.|+|..
T Consensus 77 Y~C~--~H~~~GM~G~I~V~~ 95 (124)
T 3ef4_A 77 LKCA--PHYGMGMVVLVQVGK 95 (124)
T ss_dssp EECT--TTGGGTCEEEEEESS
T ss_pred EEcC--CCCcCCCEEEEEECC
Confidence 9997 699999999999986
No 22
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=98.53 E-value=2.6e-07 Score=67.96 Aligned_cols=90 Identities=16% Similarity=0.185 Sum_probs=58.1
Q ss_pred EEEecCC-CCceeeCCCCcccccCCCeeeeCCEEEeeecC-CCCcEEEeCccC--CCCCCCCCCccccccCC-cEEEeec
Q 039191 24 TYTVGDD-AGWTIQGHIDYSKWAEGKQFHVGDTLVFKYNK-AMHDVRQVSHED--FQSCNAKAPIEEYTTGM-DSITLKM 98 (220)
Q Consensus 24 ~~~VGg~-~GW~~~~~~~Y~~WAs~~tF~VGDtLvF~y~~-~~HsV~~V~~~~--Y~~C~~s~pi~~~s~G~-~~v~L~~ 98 (220)
+..+|.+ .++.+.+ ...++++||+|+|.+.. ..|+|...+... -+..+..........|. ..+++++
T Consensus 4 ~V~~~~~~~~~~F~P--------~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~pg~~~~~~~~~~~~~~pG~~~~~tf~~ 75 (98)
T 1pcs_A 4 TVKMGSDSGALVFEP--------STVTIKAGEEVKWVNNKLSPHNIVFDADGVPADTAAKLSHKGLLFAAGESFTSTFTE 75 (98)
T ss_dssp EEEESCTTSCSSEES--------SEEEECTTCEEEEEECSSCCEEEEECCSSSCHHHHHHHCEEEEECSTTCEEEEECCS
T ss_pred EEEEecCCCccEEeC--------CEEEECCCCEEEEEECCCCCcEEEEeCCCCCccccccccccccccCCCCEEEEEcCC
Confidence 4556643 4677644 23689999999999765 369988653210 00000000011223333 4678899
Q ss_pred cccEEEEcCCCCCCCCCCeEEEEec
Q 039191 99 AGHHYFLCGIPGHCQVGQKVEINVL 123 (220)
Q Consensus 99 pG~~YFiCgv~~HC~~GmKl~I~V~ 123 (220)
+|.|+|+|. .||..||+..|.|.
T Consensus 76 ~G~y~~~C~--~H~~~gM~G~i~V~ 98 (98)
T 1pcs_A 76 PGTYTYYCE--PHRGAGMVGKVVVE 98 (98)
T ss_dssp CEEEEEECG--GGTTTTCEEEEEEC
T ss_pred CeEEEEEcC--CccccCCeEEEEEC
Confidence 999999999 79999999999884
No 23
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Probab=98.10 E-value=7.8e-06 Score=63.87 Aligned_cols=81 Identities=16% Similarity=0.144 Sum_probs=55.1
Q ss_pred cCCCCceeeCCCCcccccCCCeeeeCCEEEeeecCCCCcEEEeCccCCCCCCCCCCcc-ccccC-CcEEEeeccccEEEE
Q 039191 28 GDDAGWTIQGHIDYSKWAEGKQFHVGDTLVFKYNKAMHDVRQVSHEDFQSCNAKAPIE-EYTTG-MDSITLKMAGHHYFL 105 (220)
Q Consensus 28 Gg~~GW~~~~~~~Y~~WAs~~tF~VGDtLvF~y~~~~HsV~~V~~~~Y~~C~~s~pi~-~~s~G-~~~v~L~~pG~~YFi 105 (220)
|++.+..+.+ ...++++||+|+|.+....|+|...+. |-...... ....| ...++++++|.|.|+
T Consensus 11 g~~g~~~F~P--------~~i~V~~GdtV~f~n~d~~H~v~~~~~-----~~p~~~~~~~~~~g~t~~~tF~~~G~y~y~ 77 (122)
T 2ux6_A 11 GKDGAMVFEP--------ASLKVAPGDTVTFIPTDKGHNVETIKG-----MIPDGAEAFKSKINENYKVTFTAPGVYGVK 77 (122)
T ss_dssp ETTEEEEEES--------SEEEECTTEEEEEEESSSSCCCEECTT-----CSCTTCCCCBCCTTCCEEEEECSCEEEEEE
T ss_pred CCCCCceEeC--------CEEEECCCCEEEEEECCCCcEEEEccc-----ccCCCcceeecCCCCEEEEEeCCCEEEEEE
Confidence 5443466644 236899999999999876799987531 11111110 01122 347899999999999
Q ss_pred cCCCCCCCCCCeEEEEecCC
Q 039191 106 CGIPGHCQVGQKVEINVLPG 125 (220)
Q Consensus 106 Cgv~~HC~~GmKl~I~V~~~ 125 (220)
|.. |+. |+..|.|...
T Consensus 78 C~~--H~~--M~G~I~V~~~ 93 (122)
T 2ux6_A 78 CTP--HPF--MVGVVQVGDA 93 (122)
T ss_dssp ETT--EEE--EEEEEEESSS
T ss_pred eCC--Ccc--CEEEEEEeCC
Confidence 997 887 9999999753
No 24
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=98.04 E-value=1.8e-06 Score=64.19 Aligned_cols=67 Identities=13% Similarity=0.137 Sum_probs=45.4
Q ss_pred CCCeeeeCCEEEeeecCC---CCcEEEeCccCCCCCCCCCCccccccCC---cEEEeeccccEEEEcCCCCCCCCCCeEE
Q 039191 46 EGKQFHVGDTLVFKYNKA---MHDVRQVSHEDFQSCNAKAPIEEYTTGM---DSITLKMAGHHYFLCGIPGHCQVGQKVE 119 (220)
Q Consensus 46 s~~tF~VGDtLvF~y~~~---~HsV~~V~~~~Y~~C~~s~pi~~~s~G~---~~v~L~~pG~~YFiCgv~~HC~~GmKl~ 119 (220)
+..++++||+|.|.+.+. .|++..-+ ...+ .....|. ..++.+++|.|.|+|. .||..||+-.
T Consensus 28 ~~i~v~~G~tV~~~~~n~d~~~H~~~~~~-~~~~--------~~~~pg~~~~~~~t~~~~G~Y~y~C~--~H~~~gM~G~ 96 (100)
T 4hci_A 28 NVITIPINESTTLLLKNKGKSEHTFTIKK-LGID--------VVVESGKEKNITVKPKSAGTYELICR--YHLLKGMEGK 96 (100)
T ss_dssp SEEEECTTSCEEEEEEECSSSCEEEEEGG-GTEE--------EEECTTCEEEEEECCCSCEEEEEECT--TTGGGTCEEE
T ss_pred CEEEECCCCEEEEEEEcCCCceEEEEEec-CCcc--------eeecCCcceeEEEecccCceEEEECc--cccCCCCEEE
Confidence 347999999999987643 36654321 1110 1122232 2466789999999996 5999999999
Q ss_pred EEec
Q 039191 120 INVL 123 (220)
Q Consensus 120 I~V~ 123 (220)
|.|.
T Consensus 97 i~Ve 100 (100)
T 4hci_A 97 VIVK 100 (100)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9884
No 25
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.00 E-value=1.7e-05 Score=62.36 Aligned_cols=70 Identities=19% Similarity=0.142 Sum_probs=46.9
Q ss_pred CCeeeeCCEEEeeecCC-CCcEEEeCccCCCCCCCCCCccccccCC-cEEEeeccccEEEEcCCCCCCCCCCeEEEEec
Q 039191 47 GKQFHVGDTLVFKYNKA-MHDVRQVSHEDFQSCNAKAPIEEYTTGM-DSITLKMAGHHYFLCGIPGHCQVGQKVEINVL 123 (220)
Q Consensus 47 ~~tF~VGDtLvF~y~~~-~HsV~~V~~~~Y~~C~~s~pi~~~s~G~-~~v~L~~pG~~YFiCgv~~HC~~GmKl~I~V~ 123 (220)
..+++.||+|.|..... .|+|...+...= .=.... ..+..|. ..++++++|.|.|+|.. |. ||+..|.|.
T Consensus 61 ~i~V~~GdtV~~~N~d~~~H~v~~~~~~~g-~~~~~s--~~l~pG~t~~~tF~~~G~y~y~C~~--H~--gM~G~I~V~ 132 (132)
T 3c75_A 61 EVTIKAGETVYWVNGEVMPHNVAFKKGIVG-EDAFRG--EMMTKDQAYAITFNEAGSYDYFCTP--HP--FMRGKVIVE 132 (132)
T ss_dssp EEEECTTCEEEEEECSSSCBCCEECTTTSS-SSCEEC--CCBCTTEEEEEEECSCEEEEEECSS--CT--TCEEEEEEC
T ss_pred EEEECCCCEEEEEECCCCceEEEEeCCCCC-cccccc--cccCCCCEEEEEcCCCEEEEEEeCC--Cc--CCEEEEEEC
Confidence 46899999999996654 599986532210 000000 1122332 36888999999999997 76 999999884
No 26
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=97.98 E-value=2e-05 Score=57.98 Aligned_cols=88 Identities=23% Similarity=0.288 Sum_probs=56.4
Q ss_pred EEEecCC-CCceeeCCCCcccccCCCeeeeCCEEEeeecC-CCCcEEEeCccCCCCCCC-------CCCccccccCC-cE
Q 039191 24 TYTVGDD-AGWTIQGHIDYSKWAEGKQFHVGDTLVFKYNK-AMHDVRQVSHEDFQSCNA-------KAPIEEYTTGM-DS 93 (220)
Q Consensus 24 ~~~VGg~-~GW~~~~~~~Y~~WAs~~tF~VGDtLvF~y~~-~~HsV~~V~~~~Y~~C~~-------s~pi~~~s~G~-~~ 93 (220)
+.+||.+ .+..+.+ ...+++.||+|+|+... ..|+|..-... ..+.. .........|. ..
T Consensus 4 ~V~~~~~~~~~~f~p--------~~i~v~~Gd~V~~~N~~~~~H~v~~~~~~--~~~~~g~~~~~~~~~~~~i~pG~~~~ 73 (105)
T 3cvb_A 4 TVKMGADSGLFQFEP--------ANVTVHPGDTVKWVNNKLPPHNILFDDKQ--VPGASKELADKLSHSQLMFSPGESYE 73 (105)
T ss_dssp EEEESCTTCCSCEES--------SEEEECTTEEEEEEECSSCCEEEEECTTS--SGGGCHHHHHHHCEEEEECSTTCEEE
T ss_pred EEEEeecCCccEEeC--------CEEEEcCCCEEEEEECCCCCCeEEEeCCC--CCcccccccccccccccccCCCCeEE
Confidence 4567643 5666644 23689999999998664 36888764211 11100 00001122333 35
Q ss_pred EEe---eccccEEEEcCCCCCCCCCCeEEEEec
Q 039191 94 ITL---KMAGHHYFLCGIPGHCQVGQKVEINVL 123 (220)
Q Consensus 94 v~L---~~pG~~YFiCgv~~HC~~GmKl~I~V~ 123 (220)
+++ +++|+|+|.|. .||..||+-.|.|.
T Consensus 74 ~~f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~ 104 (105)
T 3cvb_A 74 ITFSSDFPAGTYTYYCA--PHRGAGMVGKITVE 104 (105)
T ss_dssp EEECTTSCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred EEEecCCCCeeEEEEeC--CchhcCCEEEEEEc
Confidence 677 78999999999 79999999999985
No 27
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=97.95 E-value=1.8e-05 Score=65.54 Aligned_cols=92 Identities=17% Similarity=0.276 Sum_probs=57.6
Q ss_pred eEEEecCCCCceeeCCCCcccccCCCee-eeCCEEEeeecC--C------CCcEEEeCccC---------------CCCC
Q 039191 23 ATYTVGDDAGWTIQGHIDYSKWAEGKQF-HVGDTLVFKYNK--A------MHDVRQVSHED---------------FQSC 78 (220)
Q Consensus 23 ~~~~VGg~~GW~~~~~~~Y~~WAs~~tF-~VGDtLvF~y~~--~------~HsV~~V~~~~---------------Y~~C 78 (220)
.+++|+..+++.+.+ +..++ +.||+|.|.+.+ . .|+++..+..+ |..=
T Consensus 43 ~~V~I~~~d~m~F~P--------~~itV~kaG~~Vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~v~~~~m~~~~~~~v~~ 114 (167)
T 3ay2_A 43 CAATVESNDNMQFNT--------KDIQVSKACKEFTITLKHTGTQPKASMGHNLVIAKAEDMDGVFKDGVGAADTDYVKP 114 (167)
T ss_dssp CEEEEEECTTSCBSC--------SEEEEETTCSSEEEEEEECSCSCHHHHCBCCEEEEGGGHHHHHHHHGGGGGGTTSCT
T ss_pred eEEEEEeCCCceEec--------ceEEEecCCCEEEEEEEECCCCccccccceEEeccCcchhhhHHHhhhccccccccc
Confidence 457777666777743 22455 669987777643 2 29998775432 2110
Q ss_pred CCCCCc---cccccCC-cEEEee----ccccEEEEcCCCCCCCCCCeEEEEec
Q 039191 79 NAKAPI---EEYTTGM-DSITLK----MAGHHYFLCGIPGHCQVGQKVEINVL 123 (220)
Q Consensus 79 ~~s~pi---~~~s~G~-~~v~L~----~pG~~YFiCgv~~HC~~GmKl~I~V~ 123 (220)
+..+.+ .....|. ..|+++ ++|.|+|+|.+++|=+ |||-.|+|.
T Consensus 115 ~d~~vl~~t~~l~pGet~svtf~~~~lkpG~Y~f~Ct~PgH~~-gM~G~i~V~ 166 (167)
T 3ay2_A 115 DDARVVAHTKLIGGGEESSLTLDPAKLADGDYKFACTFPGHGA-LMNGKVTLV 166 (167)
T ss_dssp TCTTEEEECCCBCTTCEEEEEECGGGGTTSCEEEECCSTTGGG-TSEEEEEEE
T ss_pred cccchhccceeeCCCCEEEEEEecCCCCCcEEEEEcCCCCchh-cCEEEEEEe
Confidence 111111 1223343 356665 7899999999999998 999999985
No 28
>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5
Probab=97.91 E-value=3.7e-06 Score=70.66 Aligned_cols=80 Identities=24% Similarity=0.289 Sum_probs=53.5
Q ss_pred eeeeCCEEEeeecC---------CCCcEEEeCccCCCCCCCCC-C--ccccccCC--cEEEee-------------ccc-
Q 039191 49 QFHVGDTLVFKYNK---------AMHDVRQVSHEDFQSCNAKA-P--IEEYTTGM--DSITLK-------------MAG- 100 (220)
Q Consensus 49 tF~VGDtLvF~y~~---------~~HsV~~V~~~~Y~~C~~s~-p--i~~~s~G~--~~v~L~-------------~pG- 100 (220)
.+++||.|.|--.. ..+.|++|++++|+.|+... . +...+..+ ..+++. ++|
T Consensus 25 ~v~igD~LdIiCP~~~~~~~~~~E~~~LY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~kftikFq~fsP~p~GlEF~pg~ 104 (178)
T 1iko_P 25 YPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNK 104 (178)
T ss_dssp CCCTTCEEEEECCCCCSSSCSCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCCEEEEECCSSCSSTTCCCCCTTE
T ss_pred EecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCC
Confidence 45679999887332 24788999999999999873 2 22223332 334332 366
Q ss_pred cEEEEcCCC-----------CCCCC-CCeEEEEecCCCCC
Q 039191 101 HHYFLCGIP-----------GHCQV-GQKVEINVLPGASS 128 (220)
Q Consensus 101 ~~YFiCgv~-----------~HC~~-GmKl~I~V~~~~s~ 128 (220)
.|||||.-. |+|.. +|||.|.|......
T Consensus 105 ~YY~IstS~G~~~gl~~~~gG~C~t~~Mkl~ikV~~~~~~ 144 (178)
T 1iko_P 105 DYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDASS 144 (178)
T ss_dssp EEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETCC---
T ss_pred ceEEEecCCcccccccccCCCccccceeEEEEEeecCCCC
Confidence 799999753 78975 89999999766543
No 29
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=97.85 E-value=5.9e-05 Score=59.63 Aligned_cols=91 Identities=15% Similarity=0.208 Sum_probs=56.6
Q ss_pred EEEecCCCCceeeCCCCcccccCCCeeeeC-CEEEeeecC-C-------CCcEEEeCcc----------------CCCCC
Q 039191 24 TYTVGDDAGWTIQGHIDYSKWAEGKQFHVG-DTLVFKYNK-A-------MHDVRQVSHE----------------DFQSC 78 (220)
Q Consensus 24 ~~~VGg~~GW~~~~~~~Y~~WAs~~tF~VG-DtLvF~y~~-~-------~HsV~~V~~~----------------~Y~~C 78 (220)
+++|+..++..+.+ +..+++.| |++.|.+.+ + .|+++..+.. +|..=
T Consensus 4 ~v~i~~~d~m~F~p--------~~i~V~~G~~~vtv~~~N~g~~~~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~v~~ 75 (129)
T 1cuo_A 4 ETTVTSGDTMTYST--------RSISVPASCAEFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNFVTP 75 (129)
T ss_dssp EEEEEECSSSCCSC--------SEEEEETTCSEEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTSCT
T ss_pred EEEEEeCCCceEcc--------CeEEEcCCCeEEEEEEEECCCCcccccccceEEecCcchhhhHHHhhhcccccccccc
Confidence 44555445666633 23588899 977777653 2 3999887543 22110
Q ss_pred CCCCCc---cccccCC-cEEEee-----ccccEEEEcCCCCCCCCCCeEEEEec
Q 039191 79 NAKAPI---EEYTTGM-DSITLK-----MAGHHYFLCGIPGHCQVGQKVEINVL 123 (220)
Q Consensus 79 ~~s~pi---~~~s~G~-~~v~L~-----~pG~~YFiCgv~~HC~~GmKl~I~V~ 123 (220)
+..+.+ .....|. ..++++ ++|.|+|+|.+++|=+ |||-.|.|.
T Consensus 76 ~~~~~~~~t~~l~pGet~svtf~~~~~~~~G~Y~f~C~~pgH~~-~M~G~i~V~ 128 (129)
T 1cuo_A 76 GDKRVIAFTPIIGGGEKTSVKFKVSALSKDEAYTYFCSYPGHFS-MMRGTLKLE 128 (129)
T ss_dssp TCTTCSEECCCBCTTCEEEEEEEGGGCCTTSCEEEECCSTTCTT-TSEEEEEEE
T ss_pred ccccceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCCchH-cCEEEEEEe
Confidence 111111 1223343 245554 7899999999999999 899999985
No 30
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...
Probab=97.83 E-value=3.1e-05 Score=58.04 Aligned_cols=83 Identities=20% Similarity=0.165 Sum_probs=54.6
Q ss_pred cceEEEecCCCCceeeCCCCcccccCCCeeeeCCEEEeeecCC-CCcEEEeCccC----CCCCCCCCCccccccCC-cEE
Q 039191 21 MAATYTVGDDAGWTIQGHIDYSKWAEGKQFHVGDTLVFKYNKA-MHDVRQVSHED----FQSCNAKAPIEEYTTGM-DSI 94 (220)
Q Consensus 21 ~A~~~~VGg~~GW~~~~~~~Y~~WAs~~tF~VGDtLvF~y~~~-~HsV~~V~~~~----Y~~C~~s~pi~~~s~G~-~~v 94 (220)
.+.+|+|.- .+|.+.+ ...+++.||+|+|+.... .|+|...+..+ |+.+ ....|. ..+
T Consensus 17 ~a~~~~V~~-~~~~F~P--------~~i~v~~Gd~V~~~N~d~~~H~v~~~~~~~g~~~~~~~-------~~~pG~~~~~ 80 (105)
T 2ov0_A 17 ADGAIVVDI-AKMKYET--------PELHVKVGDTVTWINREAMPHNVHFVAGVLGEAALKGP-------MMKKEQAYSL 80 (105)
T ss_dssp CTTCEEEEE-ETTEESS--------SEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEECC-------CBCTTEEEEE
T ss_pred CCcCEEEEE-eecEEcC--------CEEEECCCCEEEEEECCCCCEEEEEcCCCCCccccccc-------ccCCCCEEEE
Confidence 344555543 3577644 336899999999987654 69987643211 2211 122232 467
Q ss_pred EeeccccEEEEcCCCCCCCCCCeEEEEec
Q 039191 95 TLKMAGHHYFLCGIPGHCQVGQKVEINVL 123 (220)
Q Consensus 95 ~L~~pG~~YFiCgv~~HC~~GmKl~I~V~ 123 (220)
+++++|.|+|.|.. |. ||+..|.|.
T Consensus 81 tf~~~G~y~y~C~~--H~--gM~G~i~V~ 105 (105)
T 2ov0_A 81 TFTEAGTYDYHCTP--HP--FMRGKVVVE 105 (105)
T ss_dssp EECSCEEEEEECSS--CT--TCEEEEEEC
T ss_pred EeCCCEEEEEEeCC--CC--CCEEEEEEC
Confidence 88999999999997 54 999999883
No 31
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=97.78 E-value=5.2e-05 Score=57.10 Aligned_cols=66 Identities=21% Similarity=0.233 Sum_probs=46.8
Q ss_pred CCeeeeCCEEEeeecCC-CCcEEEeCccC----CCCCCCCCCccccccCC-cEEEeeccccEEEEcCCCCCCCCCCeEEE
Q 039191 47 GKQFHVGDTLVFKYNKA-MHDVRQVSHED----FQSCNAKAPIEEYTTGM-DSITLKMAGHHYFLCGIPGHCQVGQKVEI 120 (220)
Q Consensus 47 ~~tF~VGDtLvF~y~~~-~HsV~~V~~~~----Y~~C~~s~pi~~~s~G~-~~v~L~~pG~~YFiCgv~~HC~~GmKl~I 120 (220)
..+++.||+|.|..... .|+|...+... |+. ..+..|. ..++++++|.|.|+|.. |+ ||+..|
T Consensus 35 ~i~V~~G~tV~~~N~d~~~H~v~~~~~~~~~~~~~s-------~~l~~g~~~~~tf~~~G~y~~~C~~--H~--~M~G~I 103 (106)
T 1id2_A 35 EVTIKAGETVYWVNGEVMPHNVAFKKGIVGEDAFRG-------EMMTKDQAYAITFNEAGSYDYFCTP--HP--FMRGKV 103 (106)
T ss_dssp EEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEEC-------CCBCTTEEEEEEECSCEEEEEECSS--CT--TCEEEE
T ss_pred EEEECCCCEEEEEECCCCcEEEEEeCCCCCcccccc-------cccCCCCEEEEEeCCCEEEEEEeCC--CC--CCEEEE
Confidence 46899999999996654 59987653220 110 1122332 46888999999999997 77 999999
Q ss_pred Eec
Q 039191 121 NVL 123 (220)
Q Consensus 121 ~V~ 123 (220)
.|.
T Consensus 104 ~V~ 106 (106)
T 1id2_A 104 IVE 106 (106)
T ss_dssp EEC
T ss_pred EEC
Confidence 883
No 32
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=97.70 E-value=0.00021 Score=56.36 Aligned_cols=89 Identities=20% Similarity=0.316 Sum_probs=54.3
Q ss_pred EEEecCCCCceeeCCCCcccccCCCeeee---CCEEEeeecC--C------CCcEEEeCcc----------------CCC
Q 039191 24 TYTVGDDAGWTIQGHIDYSKWAEGKQFHV---GDTLVFKYNK--A------MHDVRQVSHE----------------DFQ 76 (220)
Q Consensus 24 ~~~VGg~~GW~~~~~~~Y~~WAs~~tF~V---GDtLvF~y~~--~------~HsV~~V~~~----------------~Y~ 76 (220)
+++|+..+++.+.+ .++.| ||++.|.|.+ . .|+++..+.+ +|.
T Consensus 3 ~v~v~~~d~m~F~p----------~~i~V~k~G~~vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~ 72 (128)
T 2iaa_C 3 DVSIEGNDSMQFNT----------KSIVVDKTCKEFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYV 72 (128)
T ss_dssp EEEEEECTTSCBSC----------SEEEECTTCSEEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTS
T ss_pred EEEEEeCCCceEec----------CEEEEecCCcEEEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhcccccccc
Confidence 34555555677743 45555 9977777753 2 3999876432 232
Q ss_pred CCCCCCCc---cccccCC-cEEEee----cccc-EEEEcCCCCCCCCCCeEEEEec
Q 039191 77 SCNAKAPI---EEYTTGM-DSITLK----MAGH-HYFLCGIPGHCQVGQKVEINVL 123 (220)
Q Consensus 77 ~C~~s~pi---~~~s~G~-~~v~L~----~pG~-~YFiCgv~~HC~~GmKl~I~V~ 123 (220)
.=+-.+.+ .....|. ..++++ ++|. |.|+|.+++|=+ |||-.|+|.
T Consensus 73 ~~~~~~~~~~t~~l~pGes~~vtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 127 (128)
T 2iaa_C 73 KAGDERVIAHTSVIGGGETDSVTFDVSKLKEGEDYAFFCSFPGHWS-IMKGTIELG 127 (128)
T ss_dssp CTTCTTEEEECCCBCTTCEEEEEEESSCCCTTCCEEEECCSTTCTT-TSEEEEEEC
T ss_pred ccccchhhccceeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEe
Confidence 11111111 1223343 345555 6784 999999999999 999999985
No 33
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=97.67 E-value=0.0002 Score=56.54 Aligned_cols=89 Identities=20% Similarity=0.309 Sum_probs=53.9
Q ss_pred EEEecCCCCceeeCCCCcccccCCCeeee---CCEEEeeecC--C------CCcEEEeCcc----------------CCC
Q 039191 24 TYTVGDDAGWTIQGHIDYSKWAEGKQFHV---GDTLVFKYNK--A------MHDVRQVSHE----------------DFQ 76 (220)
Q Consensus 24 ~~~VGg~~GW~~~~~~~Y~~WAs~~tF~V---GDtLvF~y~~--~------~HsV~~V~~~----------------~Y~ 76 (220)
+++|+..++..+.+ .+|.| ||++.|.+.+ . .|+++..+.. +|.
T Consensus 4 ~v~v~~~d~m~F~p----------~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~~~ 73 (129)
T 2ccw_A 4 EATVESNDAMQYNV----------KEIVVDKSCKQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYV 73 (129)
T ss_dssp EEEEEECTTSCBSC----------SEEEECTTCSEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTS
T ss_pred EEEEEeCCCccEec----------ceEEEecCCCEEEEEEEECCCcccccCcceEEEcCccchhhhHHHhhhhccccccc
Confidence 45566555677733 45555 9977777653 2 3999877543 232
Q ss_pred CCCCCCCc---cccccCC-cEEEee----cccc-EEEEcCCCCCCCCCCeEEEEec
Q 039191 77 SCNAKAPI---EEYTTGM-DSITLK----MAGH-HYFLCGIPGHCQVGQKVEINVL 123 (220)
Q Consensus 77 ~C~~s~pi---~~~s~G~-~~v~L~----~pG~-~YFiCgv~~HC~~GmKl~I~V~ 123 (220)
.=+-.+.+ .....|. ..++++ ++|. |.|+|.+++|=+ |||-.|+|.
T Consensus 74 ~~~~~~~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~pgH~~-gM~G~i~V~ 128 (129)
T 2ccw_A 74 KAGDTRVIAHTKVIGGGESDSVTFDVSKIAAGENYAYFCSFPGHWA-MMKGTLKLG 128 (129)
T ss_dssp CTTCTTEEEECCCBCTTCEEEEEEEGGGSCTTCCEEEECCSTTGGG-TSEEEEEEC
T ss_pred ccccccceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCChhH-cCEEEEEEe
Confidence 11111111 1223343 245554 5665 999999999998 999999985
No 34
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=97.58 E-value=0.00017 Score=57.01 Aligned_cols=91 Identities=20% Similarity=0.294 Sum_probs=54.9
Q ss_pred EEEecCCCCceeeCCCCcccccCCCee-eeCCEEEeeecC--C------CCcEEEeCccC----------------CCCC
Q 039191 24 TYTVGDDAGWTIQGHIDYSKWAEGKQF-HVGDTLVFKYNK--A------MHDVRQVSHED----------------FQSC 78 (220)
Q Consensus 24 ~~~VGg~~GW~~~~~~~Y~~WAs~~tF-~VGDtLvF~y~~--~------~HsV~~V~~~~----------------Y~~C 78 (220)
+++|+..+++.+.+ +..++ +.||++.|.+.+ . .|+++..+..+ |..=
T Consensus 4 ~v~v~~~d~m~F~p--------~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~~~~ 75 (128)
T 1nwp_A 4 KVTVDSTDQMSFNT--------KDIAIDKSCKTFTVELTHSGSLPKNVMGHNLVISKEADMQPIATDGLSAGIDKQYLKD 75 (128)
T ss_dssp EEEEEECTTSCBSC--------SEEEECTTCSEEEEEEEECSSCCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGTTSCT
T ss_pred EEEEEeCCCccEec--------CEEEEecCCCEEEEEEEECCCCcccCCCceEEEccccchhhHHHHHhhcccccccccc
Confidence 45566556677744 22456 679987777753 2 29998764332 2110
Q ss_pred CCCCCc---cccccCC-cEEEee----cccc-EEEEcCCCCCCCCCCeEEEEec
Q 039191 79 NAKAPI---EEYTTGM-DSITLK----MAGH-HYFLCGIPGHCQVGQKVEINVL 123 (220)
Q Consensus 79 ~~s~pi---~~~s~G~-~~v~L~----~pG~-~YFiCgv~~HC~~GmKl~I~V~ 123 (220)
+..+.+ .....|. ..++++ ++|. |.|+|.+++|=+ |||-.|+|.
T Consensus 76 ~~~~~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 128 (128)
T 1nwp_A 76 GDARVIAHTKVIGAGEKDSVTFDVSKLAAGEKYGFFCSFPGHIS-MMKGTVTLK 128 (128)
T ss_dssp TCTTEEEECCCBCTTCEEEEEEEGGGSCTTSCEEEECCSTTCGG-GSEEEEEEC
T ss_pred ccchhheeeeeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEC
Confidence 111111 1223343 345555 4676 999999999999 999999883
No 35
>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens}
Probab=97.28 E-value=0.0006 Score=57.18 Aligned_cols=77 Identities=17% Similarity=0.305 Sum_probs=51.2
Q ss_pred CeeeeCCEEEee---ecC-------CCCcEEEeCccCCCCCCCCCCccc-c--cc-----CCcEEEee------------
Q 039191 48 KQFHVGDTLVFK---YNK-------AMHDVRQVSHEDFQSCNAKAPIEE-Y--TT-----GMDSITLK------------ 97 (220)
Q Consensus 48 ~tF~VGDtLvF~---y~~-------~~HsV~~V~~~~Y~~C~~s~pi~~-~--s~-----G~~~v~L~------------ 97 (220)
..+++||.|-+- |+. +...+++|++++|++|+..+.... + +. |...+++.
T Consensus 52 i~V~i~D~LDIiCP~y~~~~~~~~~E~y~LY~Vs~e~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~FSP~p~G~E 131 (177)
T 2x11_B 52 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE 131 (177)
T ss_dssp EEECTTCEEEEECCCCCSSSCSSSCCCEEEEEECHHHHHHTCCTTTEEEEEEECCTTCSSSSCEEEEECCSSCSSTTCCC
T ss_pred EEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCcEEEEeCCCCCCCCCeEEEEEEEEcCCCCCCcc
Confidence 578999999776 331 346678999999999998653211 1 11 33344321
Q ss_pred -ccc-cEEEEcCC-----CCCCCCCCeEEEEecCCCC
Q 039191 98 -MAG-HHYFLCGI-----PGHCQVGQKVEINVLPGAS 127 (220)
Q Consensus 98 -~pG-~~YFiCgv-----~~HC~~GmKl~I~V~~~~s 127 (220)
++| .||||+.- ++-| |||.|.|.....
T Consensus 132 F~pG~~YYyISTS~~~~~g~~C---lrLkV~V~p~~~ 165 (177)
T 2x11_B 132 FRPGREYFYISSAIPDNGRRSC---LKLKVFVRPTNS 165 (177)
T ss_dssp CCTTEEEEEEEEESSCCCSSSC---CEEEEEECCTTT
T ss_pred ccCCCeEEEEecCCCCCCCCcc---eEEEEEEEcCCC
Confidence 456 58899742 2346 999999987764
No 36
>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B*
Probab=97.17 E-value=0.0011 Score=55.92 Aligned_cols=76 Identities=17% Similarity=0.374 Sum_probs=48.8
Q ss_pred CeeeeCCEEEee---ecC--------CCCcEEEeCccCCCCCCCCC-Ccccc--c-----cCCcEEEee-----------
Q 039191 48 KQFHVGDTLVFK---YNK--------AMHDVRQVSHEDFQSCNAKA-PIEEY--T-----TGMDSITLK----------- 97 (220)
Q Consensus 48 ~tF~VGDtLvF~---y~~--------~~HsV~~V~~~~Y~~C~~s~-pi~~~--s-----~G~~~v~L~----------- 97 (220)
..+++||.|-+- |+. ....|++|++++|++|+... ....+ + .|..+|++.
T Consensus 50 i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~e~y~sC~~~~~~~~~~~C~~P~~~~~p~kftikFQ~FSP~p~Gl 129 (182)
T 3czu_B 50 IHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGK 129 (182)
T ss_dssp EEECTTCEEEEECCCCC--CCCGGGSCCEEEEEECHHHHHHTCCCCGGGEEEEECCTTCTTSCCEEEEECCSCCSCTTSC
T ss_pred EEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhhhccCCCCCcEEEEeCCCCCCCCCcEEEEEEEEcCCCCCCe
Confidence 578999999876 332 23567899999999999774 22111 1 122333321
Q ss_pred --ccc-cEEEEcC----CCCCCCCCCeEEEEecCCC
Q 039191 98 --MAG-HHYFLCG----IPGHCQVGQKVEINVLPGA 126 (220)
Q Consensus 98 --~pG-~~YFiCg----v~~HC~~GmKl~I~V~~~~ 126 (220)
++| .||||+. .+|.| |||.|.|....
T Consensus 130 EF~pG~dYY~ISts~~~~gg~C---mrL~v~V~~k~ 162 (182)
T 3czu_B 130 EFKEGHSYYYISKPIHQHEDRC---LRLKVTVSGKI 162 (182)
T ss_dssp CCCTTCEEEEEEEESSSCCCSC---CEEEEEECC--
T ss_pred eEeCCCeEEEEEccCCCCCCcc---eEEEEEEecCC
Confidence 456 5889985 34566 89999998654
No 37
>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B*
Probab=97.04 E-value=0.0015 Score=52.67 Aligned_cols=76 Identities=16% Similarity=0.296 Sum_probs=50.0
Q ss_pred CeeeeCCEEEee---ecC-------CCCcEEEeCccCCCCCCCCCCcc-cc--cc-----CCcEEEee------------
Q 039191 48 KQFHVGDTLVFK---YNK-------AMHDVRQVSHEDFQSCNAKAPIE-EY--TT-----GMDSITLK------------ 97 (220)
Q Consensus 48 ~tF~VGDtLvF~---y~~-------~~HsV~~V~~~~Y~~C~~s~pi~-~~--s~-----G~~~v~L~------------ 97 (220)
..+++||.|-+- |.. ....|++|++++|++|+...... .+ +. +...+++.
T Consensus 23 i~V~i~D~lDIiCP~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFq~fsP~p~G~E 102 (138)
T 1shx_A 23 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE 102 (138)
T ss_dssp EEECTTCEEEEECCCCCTTCCSTTCCCEEEEEECHHHHHTTCSSSSEEEEEEECCTTCTTSSCEEEEECCSCCSSTTCCC
T ss_pred EEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEEcCCCCCcee
Confidence 568899999776 331 24567899999999999865321 11 11 33344321
Q ss_pred -ccc-cEEEEcCC-----CCCCCCCCeEEEEecCCC
Q 039191 98 -MAG-HHYFLCGI-----PGHCQVGQKVEINVLPGA 126 (220)
Q Consensus 98 -~pG-~~YFiCgv-----~~HC~~GmKl~I~V~~~~ 126 (220)
++| .||||+.- ++-| |||.|.|....
T Consensus 103 F~pG~~YY~ISts~~~~~g~~C---lrL~V~V~p~~ 135 (138)
T 1shx_A 103 FRPGREYFYISSAIPDNGRRSC---LKLKVFVRPTN 135 (138)
T ss_dssp CCTTEEEEEEEEESSCCSCSCC---CEEEEEECCTT
T ss_pred ecCCCeEEEEEcCCCCCCCCce---eEEEEEEEccc
Confidence 366 58899742 3457 99999998654
No 38
>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus}
Probab=96.96 E-value=0.00071 Score=54.79 Aligned_cols=76 Identities=21% Similarity=0.207 Sum_probs=49.8
Q ss_pred CeeeeCCEEEeee---cC---------CCCcEEEeCccCCCCCCCCC-Ccccc--c--cCCcEEEee-------------
Q 039191 48 KQFHVGDTLVFKY---NK---------AMHDVRQVSHEDFQSCNAKA-PIEEY--T--TGMDSITLK------------- 97 (220)
Q Consensus 48 ~tF~VGDtLvF~y---~~---------~~HsV~~V~~~~Y~~C~~s~-pi~~~--s--~G~~~v~L~------------- 97 (220)
..+++||.|-+-- .. ....+++|++++|++|+... +...+ + .+...|++.
T Consensus 22 i~V~i~D~ldIiCP~~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~p~G~EF 101 (141)
T 3d12_B 22 LYPQIGDRLDLLCPRARPPGPHSSPSYEFYKLYLVEGAQGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEF 101 (141)
T ss_dssp ECCCTTCEEEEEECCCSSCCTTCCSSCCCCEEEEECSHHHHTTBCCSSCEEEEECCCSSSCEEEEEESSSCCSCCSCCCC
T ss_pred EEecCCCEEEEECCCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCeEEEEeCCCCCCeEEEEEEEEcCCCCCceee
Confidence 4678999998763 32 34568999999999999863 22111 1 122222221
Q ss_pred ccc-cEEEEcCC-----------CCCCCC-CCeEEEEec
Q 039191 98 MAG-HHYFLCGI-----------PGHCQV-GQKVEINVL 123 (220)
Q Consensus 98 ~pG-~~YFiCgv-----------~~HC~~-GmKl~I~V~ 123 (220)
++| .||||+.- +|-|.. +|||.|.|.
T Consensus 102 ~pG~~YY~ISts~G~~~gl~~~~gG~C~t~~Mkl~i~V~ 140 (141)
T 3d12_B 102 RSHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRVG 140 (141)
T ss_dssp CTTCEEEEEECSCSSTTTTTCCBCSHHHHTCCEEEEECC
T ss_pred eCCCeEEEEecCCCCcccccccCCCccccceEEEEEEec
Confidence 456 58899853 357865 899999986
No 39
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=96.72 E-value=0.0016 Score=48.78 Aligned_cols=66 Identities=18% Similarity=0.191 Sum_probs=43.1
Q ss_pred CCeeeeCCEEEeeecCC---CCcEEEeCccCCCCCCCCCCccccccCCc-EE--EeeccccEEEEcCCCCCCCC-CCeEE
Q 039191 47 GKQFHVGDTLVFKYNKA---MHDVRQVSHEDFQSCNAKAPIEEYTTGMD-SI--TLKMAGHHYFLCGIPGHCQV-GQKVE 119 (220)
Q Consensus 47 ~~tF~VGDtLvF~y~~~---~HsV~~V~~~~Y~~C~~s~pi~~~s~G~~-~v--~L~~pG~~YFiCgv~~HC~~-GmKl~ 119 (220)
..+++.||.++|.+.+. .|++..-+. . . ......|.+ .+ +.+++|.|+|.|.. ||.. +|+..
T Consensus 39 ~i~v~~G~~V~~~~~n~d~~~H~~~i~~~-~-----~---~~~i~pG~~~~~~f~~~~~G~y~~~C~~--~~~~~~M~g~ 107 (112)
T 1iby_A 39 TLVVKKGDAVKVVVENKSPISEGFSIDAF-G-----V---QEVIKAGETKTISFTADKAGAFTIWCQL--HPKNIHLPGT 107 (112)
T ss_dssp EEEEETTCEEEEEEEECSSSCEEEEEGGG-T-----E---EEEECTTCEEEEEEECCSCEEEEEBCSS--SCTTTBCCEE
T ss_pred EEEEeCCCEEEEEEEECCCCeEEEEEcCC-C-----c---eeEeCCCCEEEEEEECCCCEEEEEECCC--CCchHHCEEE
Confidence 35899999999987642 477653221 1 1 112233432 34 44899999999997 6743 49999
Q ss_pred EEec
Q 039191 120 INVL 123 (220)
Q Consensus 120 I~V~ 123 (220)
|.|.
T Consensus 108 i~V~ 111 (112)
T 1iby_A 108 LNVV 111 (112)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9885
No 40
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=96.44 E-value=0.0066 Score=48.02 Aligned_cols=66 Identities=21% Similarity=0.276 Sum_probs=44.6
Q ss_pred CCeeeeCCEEEeeecCC--CCcEEEeCccCCCCCCCCCCccccccCC---cEEEeeccccEEEEcCCCCCCC---CCCeE
Q 039191 47 GKQFHVGDTLVFKYNKA--MHDVRQVSHEDFQSCNAKAPIEEYTTGM---DSITLKMAGHHYFLCGIPGHCQ---VGQKV 118 (220)
Q Consensus 47 ~~tF~VGDtLvF~y~~~--~HsV~~V~~~~Y~~C~~s~pi~~~s~G~---~~v~L~~pG~~YFiCgv~~HC~---~GmKl 118 (220)
..++.+||.+.|..++. .|++..-+ ...+ .....|. -.++++++|.|+|.|.. +|- .+|+.
T Consensus 61 ~l~Vp~G~~V~~~vts~DV~Hsf~ip~-~~~k--------~d~~PG~~~~~~~~~~~~G~y~~~C~e--~CG~~H~~M~g 129 (135)
T 2cua_A 61 PIEVPQGAEIVFKITSPDVIHGFHVEG-TNIN--------VEVLPGEVSTVRYTFKRPGEYRIICNQ--YCGLGHQNMFG 129 (135)
T ss_dssp SEEEETTSEEEEEEEBSSSCEEEEETT-SSCE--------EEECBTBCEEEEEECCSCEEEEEECCS--CCSTTSTTCEE
T ss_pred EEEEcCCCEEEEEEEeCCccceEEecC-CCce--------eEeCCCCcEEEEEEcCCCEEEEEECcc--cCCCCcCCCEE
Confidence 46899999999998653 36654321 1110 1112232 36889999999999987 343 68999
Q ss_pred EEEec
Q 039191 119 EINVL 123 (220)
Q Consensus 119 ~I~V~ 123 (220)
.|.|.
T Consensus 130 ~v~V~ 134 (135)
T 2cua_A 130 TIVVK 134 (135)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99986
No 41
>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens}
Probab=96.21 E-value=0.012 Score=48.43 Aligned_cols=76 Identities=17% Similarity=0.272 Sum_probs=47.6
Q ss_pred CeeeeCCEEEeeecC-----------CCCcEEEeCccCCCCCCCCCCcc-cc--cc-----CCcEEEee-----------
Q 039191 48 KQFHVGDTLVFKYNK-----------AMHDVRQVSHEDFQSCNAKAPIE-EY--TT-----GMDSITLK----------- 97 (220)
Q Consensus 48 ~tF~VGDtLvF~y~~-----------~~HsV~~V~~~~Y~~C~~s~pi~-~~--s~-----G~~~v~L~----------- 97 (220)
..+++||.|-+--.. ....+++|++++|++|+...... .+ +. |...|++.
T Consensus 32 i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~fSP~p~G~ 111 (157)
T 2wo3_B 32 VEVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHRQRGFKRWECNRPAAPGGPLKFSEKFQLFTPFSLGF 111 (157)
T ss_dssp EEECTTCEEEEECCCCCSSCCCGGGSCCEEEEEECHHHHHHTCCTTSEEEEEEECCTTCTTSSCEEEEECCSSCSSTTSC
T ss_pred EEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEECCCCCCCe
Confidence 568899999886332 23357899999999999875321 11 11 22233221
Q ss_pred --ccc-cEEEEcCC-----CCCCCCCCeEEEEecCCC
Q 039191 98 --MAG-HHYFLCGI-----PGHCQVGQKVEINVLPGA 126 (220)
Q Consensus 98 --~pG-~~YFiCgv-----~~HC~~GmKl~I~V~~~~ 126 (220)
++| .||||+.- ++-| |||.|.|....
T Consensus 112 EF~pG~~YY~ISTS~g~~~gg~C---~rlkV~V~~~~ 145 (157)
T 2wo3_B 112 EFRPGHEYYYISATPPNAVDRPC---LRLKVYVRPTQ 145 (157)
T ss_dssp CCCTTCEEEEEEECTTCSCCTTC---CEEEEEECCCC
T ss_pred eeeCCCeEEEEEecCCCCCCCcc---eeEEEEEEcCC
Confidence 456 58999953 3457 47777776554
No 42
>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E
Probab=96.09 E-value=0.007 Score=48.83 Aligned_cols=76 Identities=21% Similarity=0.263 Sum_probs=50.3
Q ss_pred eeeeCCEEEeeecCC---------CCcEEEeCccCCCCCCCCC-Ccc--ccc--cCCcEEEee-------------ccc-
Q 039191 49 QFHVGDTLVFKYNKA---------MHDVRQVSHEDFQSCNAKA-PIE--EYT--TGMDSITLK-------------MAG- 100 (220)
Q Consensus 49 tF~VGDtLvF~y~~~---------~HsV~~V~~~~Y~~C~~s~-pi~--~~s--~G~~~v~L~-------------~pG- 100 (220)
.+++||.|.+--... ...+++|++++|+.|+... ... .-+ .+...+++. ++|
T Consensus 24 ~v~i~D~ldIiCP~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~~~G~eF~~g~ 103 (140)
T 2vsm_B 24 YPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKNK 103 (140)
T ss_dssp CCCTTCEEEEEECCCC---CCCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCEEEEEESSSCCSCSSCCCCCTTE
T ss_pred EecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCC
Confidence 456899998874321 4678999999999999873 211 112 233333332 456
Q ss_pred cEEEEcCC-----------CCCCCC-CCeEEEEecC
Q 039191 101 HHYFLCGI-----------PGHCQV-GQKVEINVLP 124 (220)
Q Consensus 101 ~~YFiCgv-----------~~HC~~-GmKl~I~V~~ 124 (220)
.||||+.- +|-|.. .|||.|.|..
T Consensus 104 ~YY~Ists~g~~~gl~~~~gG~C~t~~mkl~i~V~~ 139 (140)
T 2vsm_B 104 DYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGH 139 (140)
T ss_dssp EEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETC
T ss_pred ceEEEecCCCCccccccccCCccccceEEEEEEecC
Confidence 58899863 247864 8999999964
No 43
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...
Probab=95.75 E-value=0.076 Score=41.95 Aligned_cols=85 Identities=14% Similarity=0.242 Sum_probs=49.4
Q ss_pred EEecCCCCceeeCCCCcccccCCCeeee---CCEEEeeecC-C-------CCcEEEeCcc----------------CCCC
Q 039191 25 YTVGDDAGWTIQGHIDYSKWAEGKQFHV---GDTLVFKYNK-A-------MHDVRQVSHE----------------DFQS 77 (220)
Q Consensus 25 ~~VGg~~GW~~~~~~~Y~~WAs~~tF~V---GDtLvF~y~~-~-------~HsV~~V~~~----------------~Y~~ 77 (220)
+.|...++..+.+ .+|.| |++|.|.+.. + .||++..+.+ +|-.
T Consensus 5 v~i~~~d~M~F~p----------~~i~V~~~Ge~V~~~l~N~G~~p~~~M~Hn~Vl~~~~~~~~~~~~~m~~~~~~~y~~ 74 (125)
T 3fsa_A 5 VDIQGNDQMQFNT----------NAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLK 74 (125)
T ss_dssp EEEEBCTTSCBSC----------SEEEECTTCSEEEEEEECCSSCCHHHHCBCCEEEEHHHHHHHHHHHHHHCGGGTTSC
T ss_pred EEEEccCCcEEec----------CEEEEecCCCEEEEEEEECCcccccccCceEEEcccchHHHHHHHHHhcChhhccCC
Confidence 3444445666633 45555 9999777764 2 3999887422 2321
Q ss_pred CCCCCCc---cccccCC-cEEEee-----ccccEEEEcCCCCCCCCCCeEEEEec
Q 039191 78 CNAKAPI---EEYTTGM-DSITLK-----MAGHHYFLCGIPGHCQVGQKVEINVL 123 (220)
Q Consensus 78 C~~s~pi---~~~s~G~-~~v~L~-----~pG~~YFiCgv~~HC~~GmKl~I~V~ 123 (220)
=+-.+.+ .....|. +.++++ ++|.|-|+|. +|= |||-.|.|.
T Consensus 75 ~~d~~via~t~~l~pGes~~vtf~~~~l~~~G~y~f~C~--gH~--~M~G~v~V~ 125 (125)
T 3fsa_A 75 PDDSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCA--AHA--AMKGTLTLK 125 (125)
T ss_dssp TTCTTCCEECCCBCTTCEEEEEEEGGGC---CCEEEECS--SST--TCEEEEEEC
T ss_pred CCCccceeccceeCCCcEEEEEEeCcCcCCCccEEEEcC--CCC--CcEEEEEEC
Confidence 1111111 1223444 345555 5599999999 786 999999873
No 44
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=94.80 E-value=0.031 Score=50.86 Aligned_cols=77 Identities=25% Similarity=0.336 Sum_probs=51.5
Q ss_pred CCCeeeeCCEEEeeecCC---CCcEEEeCccCCCCCCCCCCccccccCCcEEEeeccccEEEEcCCCCCCCCCCeEEEEe
Q 039191 46 EGKQFHVGDTLVFKYNKA---MHDVRQVSHEDFQSCNAKAPIEEYTTGMDSITLKMAGHHYFLCGIPGHCQVGQKVEINV 122 (220)
Q Consensus 46 s~~tF~VGDtLvF~y~~~---~HsV~~V~~~~Y~~C~~s~pi~~~s~G~~~v~L~~pG~~YFiCgv~~HC~~GmKl~I~V 122 (220)
...+++.||+|+|++.+. .|++..-.......|-.. ...+-...|+++++|+|+|.|.+.+|=..||+..|.|
T Consensus 55 p~i~v~~Gd~v~~~~~N~~~~~h~~~~~g~~~~~~~~i~----pG~~~~~~f~~~~~Gt~~y~~~~~~h~~~Gm~G~i~V 130 (447)
T 2dv6_A 55 PTLVVHEGETVQVNLVNGEGAQHDVVVDQYAARSAIVNG----KNASSTFSFVASKVGEFNYYCSIAGHRQAGMEGNIQV 130 (447)
T ss_dssp CCEEEETTCEEEEEEECSSSSCBCCEETTTTEECCCBCS----TTBEEEEEEECCSCEEEEEECCSTTHHHHTCEEEEEE
T ss_pred CeEEEcCCCEEEEEEEcCCCCceEEEEccCCcccceecC----CCCeEEEEEEcCCCEEEEEEeCCCChhhCCCEEEEEE
Confidence 456899999999988643 377643222222233221 1111123567788999999999988888899999999
Q ss_pred cCCC
Q 039191 123 LPGA 126 (220)
Q Consensus 123 ~~~~ 126 (220)
....
T Consensus 131 ~~~~ 134 (447)
T 2dv6_A 131 LPGN 134 (447)
T ss_dssp ESSC
T ss_pred eCCc
Confidence 8654
No 45
>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0
Probab=94.51 E-value=0.06 Score=43.06 Aligned_cols=73 Identities=16% Similarity=0.357 Sum_probs=45.5
Q ss_pred CeeeeCCEEEeeec---C--------CCCcEEEeCccCCCCCCCCC-Ccccc--c-----cCCcEEEee-----------
Q 039191 48 KQFHVGDTLVFKYN---K--------AMHDVRQVSHEDFQSCNAKA-PIEEY--T-----TGMDSITLK----------- 97 (220)
Q Consensus 48 ~tF~VGDtLvF~y~---~--------~~HsV~~V~~~~Y~~C~~s~-pi~~~--s-----~G~~~v~L~----------- 97 (220)
..+++||.|-+--. . ....+++|++++|++|+... ....+ + .|...+++.
T Consensus 22 v~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~~~~kft~kFQ~FSP~p~G~ 101 (132)
T 3hei_B 22 IHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGK 101 (132)
T ss_dssp EEECTTCEEEEECCCCCTTSSCGGGCCCEEEEEECHHHHHHTCCSCGGGEEEEECCTTCTTSCCEEEEECCSCCSCTTSC
T ss_pred EEeCCCCeEEEECCCCCCCCCCCCCccEEEEEEeCHHHhccccCCCCCcEEEEeCCCCCCCCceEEEEEEEEcCCCCCCe
Confidence 56789999977533 2 23567899999999999765 22111 1 233343321
Q ss_pred --ccc-cEEEEcCC----CCCCCCCCeEEEEec
Q 039191 98 --MAG-HHYFLCGI----PGHCQVGQKVEINVL 123 (220)
Q Consensus 98 --~pG-~~YFiCgv----~~HC~~GmKl~I~V~ 123 (220)
++| .||||+.- ++.| +||.|.|.
T Consensus 102 EF~pG~~YY~ISt~~~~~~~~c---l~l~v~v~ 131 (132)
T 3hei_B 102 EFKEGHSYYYISKPIHQHEDRC---LRLKVTVK 131 (132)
T ss_dssp CCCTTCEEEEEEEESSCCCCSC---CEEEEEEC
T ss_pred eecCCCcEEEEEccCCCCCCcc---eEEEEEEE
Confidence 356 58888862 2334 68888774
No 46
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=93.80 E-value=0.13 Score=42.40 Aligned_cols=69 Identities=20% Similarity=0.181 Sum_probs=43.9
Q ss_pred CCCeeeeCCEEEeeecCC--CCcEEEeCccCCCCCCCCCCccccccCC---cEEEeeccccEEEEcCC-CCCCCCCCeEE
Q 039191 46 EGKQFHVGDTLVFKYNKA--MHDVRQVSHEDFQSCNAKAPIEEYTTGM---DSITLKMAGHHYFLCGI-PGHCQVGQKVE 119 (220)
Q Consensus 46 s~~tF~VGDtLvF~y~~~--~HsV~~V~~~~Y~~C~~s~pi~~~s~G~---~~v~L~~pG~~YFiCgv-~~HC~~GmKl~ 119 (220)
+...+.+|+.++|..++. .|+...-+ +. -......|. ..++.+++|.||+.|.. -|+--.+|+..
T Consensus 93 n~l~VP~G~~Vr~~vTS~DViHsf~IP~---lg------ik~da~PG~~n~~~~~~~kpG~y~g~Cse~CG~~Hs~M~g~ 163 (168)
T 3s8f_B 93 NPIEVPQGAEIVFKITSPDVIHGFHVEG---TN------INVEVLPGEVSTVRYTFKRPGEYRIICNQYCGLGHQNMFGT 163 (168)
T ss_dssp SSEEEETTSEEEEEEECSSSCEEEEETT---SS------CEEEECTTBCEEEEEECCSCEEEEEECCSCCSTTGGGCEEE
T ss_pred CEEEEeCCCeEEEEEecCCceEEEEECC---CC------eEEEecCCceeEEEEEeCCCEEEEEECCcCCCCCcCCCEEE
Confidence 345788999999987764 34444321 11 000111232 36788999999999996 23334569999
Q ss_pred EEec
Q 039191 120 INVL 123 (220)
Q Consensus 120 I~V~ 123 (220)
|.|.
T Consensus 164 V~V~ 167 (168)
T 3s8f_B 164 IVVK 167 (168)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9985
No 47
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=92.01 E-value=0.15 Score=49.60 Aligned_cols=67 Identities=15% Similarity=0.166 Sum_probs=44.6
Q ss_pred CeeeeCCEEEeeecCC------CCcEEEeCccCCCCCCCCCCccccccCC---cEEEeeccccEEEEcCC---CCCCCCC
Q 039191 48 KQFHVGDTLVFKYNKA------MHDVRQVSHEDFQSCNAKAPIEEYTTGM---DSITLKMAGHHYFLCGI---PGHCQVG 115 (220)
Q Consensus 48 ~tF~VGDtLvF~y~~~------~HsV~~V~~~~Y~~C~~s~pi~~~s~G~---~~v~L~~pG~~YFiCgv---~~HC~~G 115 (220)
.++..||+|+|...+. .|++..-+. ..+ ....-|. ..|+++++|.|||.|.. ..| .|
T Consensus 515 I~V~~Gd~V~~~ltN~d~~~Dv~Hgf~ip~~-gv~--------~~i~PG~t~t~~Fta~~pGtY~yhC~e~Cg~~H--~g 583 (595)
T 1fwx_A 515 FTVKEGDEVTVIVTNLDEIDDLTHGFTMGNY-GVA--------MEIGPQMTSSVTFVAANPGVYWYYCQWFCHALH--ME 583 (595)
T ss_dssp EEEETTCEEEEEEEECCCSTTCCEEEEETTT-TEE--------EEECTTCEEEEEEECCSCEEEEEECCSCCSTTC--TT
T ss_pred EEEECCCEEEEEEEeCCCCCCceeeEEecCC-Ccc--------eeeCCCCeEEEEEECCCCEEEEEECCCCCCCCc--cC
Confidence 5788999999997652 466654221 110 1122232 36788999999999984 245 49
Q ss_pred CeEEEEecCC
Q 039191 116 QKVEINVLPG 125 (220)
Q Consensus 116 mKl~I~V~~~ 125 (220)
|+..|.|...
T Consensus 584 M~G~IiV~p~ 593 (595)
T 1fwx_A 584 MRGRMLVEPK 593 (595)
T ss_dssp CEEEEEEECC
T ss_pred CEEEEEEEcC
Confidence 9999999753
No 48
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=90.94 E-value=0.22 Score=48.71 Aligned_cols=67 Identities=16% Similarity=0.256 Sum_probs=44.8
Q ss_pred CCeeeeCCEEEeeecCC------CCcEEEeCccCCCCCCCCCCccccccCC---cEEEeeccccEEEEcCCCCCCCC---
Q 039191 47 GKQFHVGDTLVFKYNKA------MHDVRQVSHEDFQSCNAKAPIEEYTTGM---DSITLKMAGHHYFLCGIPGHCQV--- 114 (220)
Q Consensus 47 ~~tF~VGDtLvF~y~~~------~HsV~~V~~~~Y~~C~~s~pi~~~s~G~---~~v~L~~pG~~YFiCgv~~HC~~--- 114 (220)
..++.+||+|.|..++. .|++..-+ +. ......-|. ..|+.+++|.|||+|.. +|-.
T Consensus 559 eI~VP~GdtVrfiLTN~D~veDViHSF~IPs---lG------IK~DaiPGrtnsvtFtadkPGvY~y~CSE--~CGa~Hs 627 (638)
T 3sbq_A 559 EFTVKQGDEVTVTITNIDQIEDVSHGFVVVN---HG------VSMEISPQQTSSITFVADKPGLHWYYCSW--FCHALHM 627 (638)
T ss_dssp EEEEETTCEEEEEEEECCCSTTCCEEEEETT---TT------EEEEECTTCEEEEEEECCSCEEEEEECCS--CCSTTCT
T ss_pred EEEEecCceeEEEEecCCcCCCceeeeEecC---CC------ceeeeCCCCeEEEEEEcCCCEEEEEECCC--cCCCCcc
Confidence 45899999999987652 46665422 11 001112232 35788999999999997 5654
Q ss_pred CCeEEEEecC
Q 039191 115 GQKVEINVLP 124 (220)
Q Consensus 115 GmKl~I~V~~ 124 (220)
+|+..|.|.+
T Consensus 628 ~M~G~ViVEP 637 (638)
T 3sbq_A 628 EMVGRMMVEP 637 (638)
T ss_dssp TCEEEEEEEC
T ss_pred cceEEEEEec
Confidence 4999999864
No 49
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=82.19 E-value=1.4 Score=38.59 Aligned_cols=75 Identities=20% Similarity=0.222 Sum_probs=46.8
Q ss_pred CeeeeCCEEEeeecCC-----CCcEEEeCccCCCCCCCCCCccccccCC---cEEEeeccccEEEEcCCCC-----CCCC
Q 039191 48 KQFHVGDTLVFKYNKA-----MHDVRQVSHEDFQSCNAKAPIEEYTTGM---DSITLKMAGHHYFLCGIPG-----HCQV 114 (220)
Q Consensus 48 ~tF~VGDtLvF~y~~~-----~HsV~~V~~~~Y~~C~~s~pi~~~s~G~---~~v~L~~pG~~YFiCgv~~-----HC~~ 114 (220)
.+++.||+|++++.+. .|.+..-...+.+.- ..+....-|. ..|+++++|++||-|...+ |=..
T Consensus 66 i~~~~Gd~v~v~~~N~~~~~h~Hg~~~~~~~~~~~~---~~~~~i~PG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~~ 142 (333)
T 1mzy_A 66 MIVHEGDYVELTLINPPENTMPHNIDFHAATGALGG---GGLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVS 142 (333)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGGG---GGGCCBCTTEEEEEEEECCSCEEEEEECCCSTTHHHHHHHT
T ss_pred EEecCCCEEEEEEEECCCCcccccceecCCCCCCCC---CceeEeCCCCEEEEEEECCCCEEEEEeecCCcccchhhhhC
Confidence 4688999999987653 366653221111100 0111122332 3577789999999998864 6668
Q ss_pred CCeEEEEecCC
Q 039191 115 GQKVEINVLPG 125 (220)
Q Consensus 115 GmKl~I~V~~~ 125 (220)
||.-.|.|...
T Consensus 143 Gl~G~~iV~~~ 153 (333)
T 1mzy_A 143 GMAGCIMVLPR 153 (333)
T ss_dssp TCEEEEEEECT
T ss_pred CCEEEEEEccC
Confidence 99998888643
No 50
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=79.79 E-value=1.8 Score=37.84 Aligned_cols=76 Identities=20% Similarity=0.264 Sum_probs=46.7
Q ss_pred CeeeeCCEEEeeecCC-----CCcEEEeCccCCCCCCCCCCccccccCC---cEEEeeccccEEEEcCCCC----CCCCC
Q 039191 48 KQFHVGDTLVFKYNKA-----MHDVRQVSHEDFQSCNAKAPIEEYTTGM---DSITLKMAGHHYFLCGIPG----HCQVG 115 (220)
Q Consensus 48 ~tF~VGDtLvF~y~~~-----~HsV~~V~~~~Y~~C~~s~pi~~~s~G~---~~v~L~~pG~~YFiCgv~~----HC~~G 115 (220)
.+++.||+|++++.+. .|++..-.....+ -...+.....|. ..|+++++|++||-|...+ |=..|
T Consensus 67 i~v~~Gd~v~v~~~N~~~~~~~h~~~~h~~~~~~---~~~~~~~i~pG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~G 143 (336)
T 1oe1_A 67 LVVHEGDYVQLTLVNPATNAMPHNVDFHGATGAL---GGAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSG 143 (336)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGG---GGGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHTT
T ss_pred EEEcCCCEEEEEEEcCCCCCccccceECCCCCCC---CCcceEEeCCCCEEEEEEECCCCeEEEEecCCCCchhHHHhCC
Confidence 4788999999888653 4666542111000 001111123333 3577789999999999754 44679
Q ss_pred CeEEEEecCCC
Q 039191 116 QKVEINVLPGA 126 (220)
Q Consensus 116 mKl~I~V~~~~ 126 (220)
|.-.|.|....
T Consensus 144 l~G~liV~~~~ 154 (336)
T 1oe1_A 144 MSGTLMVLPRD 154 (336)
T ss_dssp CEEEEEEECTT
T ss_pred CeEEEEEecCc
Confidence 99998887543
No 51
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=74.12 E-value=2.6 Score=36.98 Aligned_cols=75 Identities=20% Similarity=0.192 Sum_probs=44.2
Q ss_pred CeeeeCCEEEeeecCC-----CCcEEEeCccCCCCCCCCCCccccccCC---cEEEeeccccEEEEcCCC---CCCCCCC
Q 039191 48 KQFHVGDTLVFKYNKA-----MHDVRQVSHEDFQSCNAKAPIEEYTTGM---DSITLKMAGHHYFLCGIP---GHCQVGQ 116 (220)
Q Consensus 48 ~tF~VGDtLvF~y~~~-----~HsV~~V~~~~Y~~C~~s~pi~~~s~G~---~~v~L~~pG~~YFiCgv~---~HC~~Gm 116 (220)
.+++.||+|++++.+. .|++..=-....|. ..... ....|. ..|+.+++|+|||-|... .|-..||
T Consensus 72 i~v~~Gd~v~v~~~N~~~~~~~~~ih~HG~~~~dG--~~~~~-~i~PG~~~~y~f~~~~~Gt~wyH~h~~~~~~~~~~Gl 148 (327)
T 1kbv_A 72 IRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGG--GAAAT-FTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGM 148 (327)
T ss_dssp EEEETTCEEEEEEEECTTCSSCBCCEETTCCSGGG--GTTTT-CBCTTEEEEEEEECCSCEEEEEECCCSSHHHHHHTTC
T ss_pred EEEeCCCEEEEEEEECCCCCCceeeEeCccccCCC--CCcce-eecCCCEEEEEEECCCCeEEEEEeCCCChhhhhhcce
Confidence 5789999999987643 35553210000110 00001 122232 356778999999999763 3556799
Q ss_pred eEEEEecCC
Q 039191 117 KVEINVLPG 125 (220)
Q Consensus 117 Kl~I~V~~~ 125 (220)
.-.|.|...
T Consensus 149 ~G~~iV~~~ 157 (327)
T 1kbv_A 149 YGLILVEPK 157 (327)
T ss_dssp EEEEEEECT
T ss_pred EEEEEEecC
Confidence 999888753
No 52
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=69.32 E-value=4.8 Score=35.10 Aligned_cols=75 Identities=17% Similarity=0.278 Sum_probs=45.9
Q ss_pred CeeeeCCEEEeeecCC-----CCcEEEeCccCCCCCCCCCCccccccCC---cEEEeeccccEEEEcCCCC----CCCCC
Q 039191 48 KQFHVGDTLVFKYNKA-----MHDVRQVSHEDFQSCNAKAPIEEYTTGM---DSITLKMAGHHYFLCGIPG----HCQVG 115 (220)
Q Consensus 48 ~tF~VGDtLvF~y~~~-----~HsV~~V~~~~Y~~C~~s~pi~~~s~G~---~~v~L~~pG~~YFiCgv~~----HC~~G 115 (220)
.+++.||+|++++.+. .|.+..-.....+ + ..+.....-|. ..|+++++|++||-|...+ |=..|
T Consensus 73 i~v~~Gd~v~v~~~N~~~~~~~hg~~~~~~~~~~--~-~~~~~~i~PG~~~~y~~~~~~~Gt~wyH~h~~~~~~~~~~~G 149 (340)
T 2bw4_A 73 MVVHENDYVELRLINPDTNTLLHNIDFHAATGAL--G-GGALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSG 149 (340)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGG--G-GGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHTT
T ss_pred EEEcCCCEEEEEEEeCCCCCccCcceeCCcCCCC--C-CccceEeCCCCEEEEEEECCCCeEEEEEcCCCCchhhHHhCc
Confidence 4688999999988753 3665432111100 0 01111122332 3577789999999999764 55689
Q ss_pred CeEEEEecCC
Q 039191 116 QKVEINVLPG 125 (220)
Q Consensus 116 mKl~I~V~~~ 125 (220)
|.-.|.|...
T Consensus 150 l~G~~iV~~~ 159 (340)
T 2bw4_A 150 MNGAIMVLPR 159 (340)
T ss_dssp CEEEEEEECT
T ss_pred CEEEEEEccC
Confidence 9888888654
No 53
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=69.09 E-value=2.4 Score=38.37 Aligned_cols=75 Identities=17% Similarity=0.134 Sum_probs=43.8
Q ss_pred CeeeeCCEEEeeecCC-----CCcEEEeCccCCCCCCCCCCccccccCC---cEEEeeccccEEEEcCC---CCCCCCCC
Q 039191 48 KQFHVGDTLVFKYNKA-----MHDVRQVSHEDFQSCNAKAPIEEYTTGM---DSITLKMAGHHYFLCGI---PGHCQVGQ 116 (220)
Q Consensus 48 ~tF~VGDtLvF~y~~~-----~HsV~~V~~~~Y~~C~~s~pi~~~s~G~---~~v~L~~pG~~YFiCgv---~~HC~~Gm 116 (220)
.+++.||+|++++.+. .|++..=-....+. ........-|. ..|+.+++|++||-|.. ..|=..||
T Consensus 62 i~v~~Gd~v~v~~~N~l~~~~~~~iH~HG~~~~dG---~~~~~~i~pg~~~~y~f~~~~~Gt~~yH~H~~~~~~~~~~Gl 138 (442)
T 2zoo_A 62 IRVREGDEIEFNLSNHPSSKMPHNIDLHAVTGPGG---GAESSFTAPGHTSTFNFKALNPGLYIYHCATAPVGMHIANGM 138 (442)
T ss_dssp EEEETTCEEEEEEEECTTCSSCBCCEETTCCSGGG---GGGGCCBCTTCEEEEEEECCSCEEEEEECCCSSHHHHHHTTC
T ss_pred EEEeCCCEEEEEEEECCCCCCCCCEEecCCcCCCC---CCccEEECCCCEEEEEEEcCCCeEEEEecCCCChHHHHhCcc
Confidence 4788999999987654 35543210000010 00000122233 25677889999999953 34666899
Q ss_pred eEEEEecCC
Q 039191 117 KVEINVLPG 125 (220)
Q Consensus 117 Kl~I~V~~~ 125 (220)
...|.|...
T Consensus 139 ~G~~iv~~~ 147 (442)
T 2zoo_A 139 YGLILVEPK 147 (442)
T ss_dssp EEEEEEECT
T ss_pred EEEEEEeCC
Confidence 988888744
No 54
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=68.33 E-value=1.4 Score=32.60 Aligned_cols=21 Identities=19% Similarity=0.506 Sum_probs=17.2
Q ss_pred cccCCCeeeeCCEEEeeecCC
Q 039191 43 KWAEGKQFHVGDTLVFKYNKA 63 (220)
Q Consensus 43 ~WAs~~tF~VGDtLvF~y~~~ 63 (220)
+.+..+..++||.|+|+|...
T Consensus 71 ~Fv~~~~L~~GD~lvF~~~~~ 91 (104)
T 1yel_A 71 NFVKDNNLEDGKYLQFIYDRD 91 (104)
T ss_dssp HHHHHHTCCTTCEEEEEECSS
T ss_pred HHHHHcCCCCCCEEEEEEcCC
Confidence 345667899999999999864
No 55
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=67.45 E-value=1.7 Score=34.52 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=20.5
Q ss_pred cccCCCeeeeCCEEEeeecCCCCcEEEe
Q 039191 43 KWAEGKQFHVGDTLVFKYNKAMHDVRQV 70 (220)
Q Consensus 43 ~WAs~~tF~VGDtLvF~y~~~~HsV~~V 70 (220)
+.+..+.+++||.++|++.....-+++|
T Consensus 110 ~Fv~dn~L~~GD~cvFeli~~~~~~f~V 137 (146)
T 4i1k_A 110 EFTLENNLGEGDVCVFELLRTRDFVLKV 137 (146)
T ss_dssp HHHHHTTCCTTCEEEEEECSSSSCEEEE
T ss_pred HHHHHcCCCCCCEEEEEEecCCceEEEE
Confidence 4566789999999999998753225544
No 56
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=65.37 E-value=6.6 Score=33.68 Aligned_cols=76 Identities=18% Similarity=0.239 Sum_probs=44.6
Q ss_pred CeeeeCCEEEeeecCC---CCcEEEe--CccCCCCCC--CCCCccccccCC---cEEEeeccccEEEEcCCC---CCCCC
Q 039191 48 KQFHVGDTLVFKYNKA---MHDVRQV--SHEDFQSCN--AKAPIEEYTTGM---DSITLKMAGHHYFLCGIP---GHCQV 114 (220)
Q Consensus 48 ~tF~VGDtLvF~y~~~---~HsV~~V--~~~~Y~~C~--~s~pi~~~s~G~---~~v~L~~pG~~YFiCgv~---~HC~~ 114 (220)
.+++.||+|++++.+. .|++.-= .....|.-. ...++ .-|. ..|+.+++|++||-|... .|=..
T Consensus 68 i~~~~Gd~v~v~~~N~~~~~~~iH~HG~~~~~~DG~p~~~~~~i---~PG~~~~y~f~~~~~Gt~~yH~H~~~~~~~~~~ 144 (288)
T 3gdc_A 68 LWAREGDALRIHFTNAGAHPHTIHFHGVHRATMDGTPGIGAGSI---APGQSFTYEFDATPFGTHLYHCHQSPLAPHIAK 144 (288)
T ss_dssp EEEETTCEEEEEEEECSSSCBCCEESSCCCGGGSCCTTSTTCSB---CTTCEEEEEEECCSCEEEEEECCCSSHHHHHHT
T ss_pred EEEeCCCEEEEEEEeCCCCcccEEeccccccccCCCCCccceeE---CCCCEEEEEEEcCCCccEEEEecCcchHHHHhC
Confidence 5789999999988653 2333221 011111000 00111 2222 357788999999999876 35568
Q ss_pred CCeEEEEecCCC
Q 039191 115 GQKVEINVLPGA 126 (220)
Q Consensus 115 GmKl~I~V~~~~ 126 (220)
||.-.|.|....
T Consensus 145 Gl~G~liV~~~~ 156 (288)
T 3gdc_A 145 GLYGGFIVEPKE 156 (288)
T ss_dssp TCEEEEEEECSS
T ss_pred cCeEEEEEeCCc
Confidence 999888886543
No 57
>3l6w_A Hemocyanin 1; cupredoxin domain, copper-binding protein, metal-binding, oxygen binding; 4.00A {Megathura crenulata} PDB: 3qjo_A
Probab=65.28 E-value=4.1 Score=38.82 Aligned_cols=73 Identities=11% Similarity=0.270 Sum_probs=43.0
Q ss_pred eeeeCCEEEeeecCC--CCcEEEe-CccCCCCCCCCCCc-cccccCCcEEEeeccccEEEEcCCCCCCCCCC-eEEEEec
Q 039191 49 QFHVGDTLVFKYNKA--MHDVRQV-SHEDFQSCNAKAPI-EEYTTGMDSITLKMAGHHYFLCGIPGHCQVGQ-KVEINVL 123 (220)
Q Consensus 49 tF~VGDtLvF~y~~~--~HsV~~V-~~~~Y~~C~~s~pi-~~~s~G~~~v~L~~pG~~YFiCgv~~HC~~Gm-Kl~I~V~ 123 (220)
-++-|-.|.|.=-.. ..-++.+ +......|...--. ..|.-| .+..|+ +|.|||..+...-|++|- |+.|.|.
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (491)
T 3l6w_A 414 VVKRGTKIMFMSVDEAVTTPMLNLGSYTAMFKCKVPPFSFHAFELG-KMYSVE-SGDYFMTASTTELCNDNNLRIHVHVD 491 (491)
T ss_pred EeecCCEEEEEecccchhhHHHhhhhhhhhhccccCCCccCccccc-ceEecC-CCceEecCChHHHHhCCceeEEEEeC
Confidence 466677777743321 1111222 33445568765221 111112 244444 799999999999999997 9999873
No 58
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=60.43 E-value=6.9 Score=34.01 Aligned_cols=34 Identities=21% Similarity=0.074 Sum_probs=29.6
Q ss_pred EEEeeccccEEEEcCCCCCC-CCCCeEEEEecCCC
Q 039191 93 SITLKMAGHHYFLCGIPGHC-QVGQKVEINVLPGA 126 (220)
Q Consensus 93 ~v~L~~pG~~YFiCgv~~HC-~~GmKl~I~V~~~~ 126 (220)
.|+.+++|.|+|.|....|+ +.||.-.|+|....
T Consensus 286 lv~~~~pG~y~~~~h~~~~~~~~G~~~~~~V~~~~ 320 (336)
T 1oe1_A 286 LYTFKQPGVYAYLNHNLIEAFELGAAGHIKVEGKW 320 (336)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTSCEEEEEEESCC
T ss_pred EEEcCCCceEEEEechhhccccCCCeEEEEECCCC
Confidence 57788899999999988898 89999999997654
No 59
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=56.78 E-value=5.3 Score=34.80 Aligned_cols=34 Identities=9% Similarity=-0.067 Sum_probs=29.7
Q ss_pred EEEeeccccEEEEcCCCCCC-CCCCeEEEEecCCC
Q 039191 93 SITLKMAGHHYFLCGIPGHC-QVGQKVEINVLPGA 126 (220)
Q Consensus 93 ~v~L~~pG~~YFiCgv~~HC-~~GmKl~I~V~~~~ 126 (220)
.|+.+++|.|+|.|....|+ +.||.-.|+|....
T Consensus 286 ~v~a~~pG~y~~~ch~~~h~~~~Gm~~~~~v~~~~ 320 (333)
T 1mzy_A 286 LYKFLQPGVYAYVNHNLIEAVHKGATAHVLVEGEW 320 (333)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTCCEEEEEEESCC
T ss_pred EEEcCCCEEEEEecChhhhHhhCCCEEEEEEcCCC
Confidence 47778999999999999999 99999999997644
No 60
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=56.34 E-value=11 Score=32.05 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=26.2
Q ss_pred ccccEEEEcCCCCCCCCCCeEEEEecCCC
Q 039191 98 MAGHHYFLCGIPGHCQVGQKVEINVLPGA 126 (220)
Q Consensus 98 ~pG~~YFiCgv~~HC~~GmKl~I~V~~~~ 126 (220)
.+|.++|-|-+..|=..||...+.|....
T Consensus 239 npG~w~~HCH~~~H~~~GM~g~~~V~~~~ 267 (276)
T 3kw8_A 239 GAGAWMYHCHVQSHSDMGMVGLFLVKKPD 267 (276)
T ss_dssp CSEEEEEEECSHHHHHTTCEEEEEEECTT
T ss_pred CCCeEEEECCCchHhhCCCeEEEEEeCCC
Confidence 48999999999999999999999998664
No 61
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=53.44 E-value=4.3 Score=34.87 Aligned_cols=32 Identities=13% Similarity=0.161 Sum_probs=28.1
Q ss_pred EEEeeccccEEEEcCCCCCCCCCCeEEEEecC
Q 039191 93 SITLKMAGHHYFLCGIPGHCQVGQKVEINVLP 124 (220)
Q Consensus 93 ~v~L~~pG~~YFiCgv~~HC~~GmKl~I~V~~ 124 (220)
.++.+.||.|.|.|-+..|=+.||.-.|+|.+
T Consensus 257 ~~~~~~pG~~~~hCH~~~H~~~GM~~~~~V~~ 288 (288)
T 3gdc_A 257 ELRFPYPGKFMFHAHKTEFAELGWMGFFEVSA 288 (288)
T ss_dssp EECCCSCEEEEEECSSHHHHTTTCEEEEEEEC
T ss_pred EEECCCCEEEEEEecChHHHhcCCCEEEEEeC
Confidence 45667899999999999999999999999863
No 62
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=51.68 E-value=13 Score=32.63 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=25.1
Q ss_pred cEEEeeccccEEEEcCCCC--CCC-CCCeEEEEecC
Q 039191 92 DSITLKMAGHHYFLCGIPG--HCQ-VGQKVEINVLP 124 (220)
Q Consensus 92 ~~v~L~~pG~~YFiCgv~~--HC~-~GmKl~I~V~~ 124 (220)
..|+++++|+|||-|.... |=. .||.-.|.|..
T Consensus 91 y~f~~~~~Gt~wyH~H~~~~~q~~~~Gl~G~liV~p 126 (339)
T 2zwn_A 91 YKFKADRIGTLWYHCHVNVNEHVGVRGMWGPLIVDP 126 (339)
T ss_dssp EEEECCSCEEEEEECCSSHHHHTTTSCCEEEEEEEC
T ss_pred EEEECCCCEEEEEEecCCchhhhhcCCceEeEEecC
Confidence 3678888999999998653 334 78888887764
No 63
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=49.60 E-value=12 Score=33.13 Aligned_cols=32 Identities=9% Similarity=0.240 Sum_probs=25.8
Q ss_pred EEEeeccccEEEEcCCCCCCCC---CCeEEEEecCCC
Q 039191 93 SITLKMAGHHYFLCGIPGHCQV---GQKVEINVLPGA 126 (220)
Q Consensus 93 ~v~L~~pG~~YFiCgv~~HC~~---GmKl~I~V~~~~ 126 (220)
.++.+++|.||..|.. .|.. .|++.|.|....
T Consensus 232 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vvs~~ 266 (298)
T 3hb3_B 232 WFSVDQEGVYFGQCSE--LCGINHAYMPIVVKAVSQE 266 (298)
T ss_dssp EEECSSSEEEEECCCS--CCSTTTTSCCEEEEEECHH
T ss_pred EEEeCCCEEEEEEccc--ccCcCccCCeeEEEEEcHH
Confidence 5788999999999996 5654 599999988643
No 64
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}
Probab=49.01 E-value=18 Score=31.91 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=26.6
Q ss_pred eccccEEEEcCCCCCCCCCCeEEEEecCCC
Q 039191 97 KMAGHHYFLCGIPGHCQVGQKVEINVLPGA 126 (220)
Q Consensus 97 ~~pG~~YFiCgv~~HC~~GmKl~I~V~~~~ 126 (220)
+.+|.++|-|-+..|=+.||...+.|....
T Consensus 279 ~~pG~w~~HCHi~~H~~~GM~g~~~V~~~~ 308 (343)
T 3cg8_A 279 VGAGAWMYHCHVQSHSDMGMVGLFLVKKPD 308 (343)
T ss_dssp TCSEEEEEEECSHHHHHTTCEEEEEEECTT
T ss_pred CCCeeEEEeCCCHHHHhccCcEEEEEecCC
Confidence 478999999999999999999999998654
No 65
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=48.56 E-value=12 Score=31.53 Aligned_cols=63 Identities=21% Similarity=0.281 Sum_probs=39.1
Q ss_pred eeeeCCEEEeeecCC--CCcEEEeCccCCCCCCCCCCcccc-ccCC---cEEEeeccccEEEEcCCCCCCCC---CCeEE
Q 039191 49 QFHVGDTLVFKYNKA--MHDVRQVSHEDFQSCNAKAPIEEY-TTGM---DSITLKMAGHHYFLCGIPGHCQV---GQKVE 119 (220)
Q Consensus 49 tF~VGDtLvF~y~~~--~HsV~~V~~~~Y~~C~~s~pi~~~-s~G~---~~v~L~~pG~~YFiCgv~~HC~~---GmKl~ 119 (220)
.+.+|+.|+|.-++. .|+...-+ + . ++.. --|. ..++.+++|.||..|.. .|.. .|++.
T Consensus 44 ~lP~g~~V~~~lTS~DViHSF~IP~---l-----g--vK~daiPGr~n~l~~~~~~pG~y~g~CsE--~CG~~Hs~M~~~ 111 (205)
T 1cyx_A 44 AFPANTPVYFKVTSNSVMHSFFIPR---L-----G--SQIYAMAGMQTRLHLIANEPGTYDGICAE--ICGPGHSGMKFK 111 (205)
T ss_dssp EEETTSCEEEEEEESSSCEEEEEGG---G-----T--EEEEECTTCCEEEEECCSSSEEEEEEECS--CCSTTSTTCCEE
T ss_pred EEeCCCEEEEEEecCCceeeEEecc---c-----C--cEEEecCCceEEEEEEeCCCeEEEEEccc--ccccchhhceEE
Confidence 566888888887653 23333321 1 0 1111 1122 25778899999999986 5654 59999
Q ss_pred EEec
Q 039191 120 INVL 123 (220)
Q Consensus 120 I~V~ 123 (220)
|.|.
T Consensus 112 v~vv 115 (205)
T 1cyx_A 112 AIAT 115 (205)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9988
No 66
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=47.91 E-value=2.3 Score=36.88 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=20.3
Q ss_pred EEEeeccccEEEEcCCCCCCCCCCeEEEEecCC
Q 039191 93 SITLKMAGHHYFLCGIPGHCQVGQKVEINVLPG 125 (220)
Q Consensus 93 ~v~L~~pG~~YFiCgv~~HC~~GmKl~I~V~~~ 125 (220)
.|+.+++|.++|.|.+..|-..||...|+|...
T Consensus 269 ~~~~~~pG~~~~hch~~~H~~~GM~~~~~V~~~ 301 (306)
T 1sdd_A 269 NMTVSPEGRWTIASLIPRHFQAGMQAYIDIKNC 301 (306)
T ss_dssp -------CCCCCBCCSTTTGGGTCBCCC-----
T ss_pred EEEcCCCeEEEEEeCChHHHhcCCeEEEEEecC
Confidence 467788999999999999999999999888754
No 67
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=47.69 E-value=14 Score=31.93 Aligned_cols=30 Identities=13% Similarity=0.341 Sum_probs=24.9
Q ss_pred EEEeeccccEEEEcCCCCCCCCC---CeEEEEecC
Q 039191 93 SITLKMAGHHYFLCGIPGHCQVG---QKVEINVLP 124 (220)
Q Consensus 93 ~v~L~~pG~~YFiCgv~~HC~~G---mKl~I~V~~ 124 (220)
.++.+++|.||..|.. -|..| |++.|.|..
T Consensus 214 ~~~~~~~G~y~g~Cse--~CG~~H~~M~~~v~vv~ 246 (262)
T 2gsm_B 214 WFRAEREGIFFGQCSE--LCGISHAYMPITVKVVS 246 (262)
T ss_dssp EEECCSCEEEEECCCS--CCSTTGGGCCEEEEEEC
T ss_pred EEecCCcEEEEEEChH--hcccCcccCeEEEEEEc
Confidence 5788999999999986 67654 999988874
No 68
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=47.59 E-value=30 Score=30.88 Aligned_cols=83 Identities=17% Similarity=0.154 Sum_probs=48.6
Q ss_pred EEecCCCCceeeCCCCcccc----cCCCeeeeCCEEEeeecCC--CCcEEEeCccCCCCCCCCCCcccc-ccCC---cEE
Q 039191 25 YTVGDDAGWTIQGHIDYSKW----AEGKQFHVGDTLVFKYNKA--MHDVRQVSHEDFQSCNAKAPIEEY-TTGM---DSI 94 (220)
Q Consensus 25 ~~VGg~~GW~~~~~~~Y~~W----As~~tF~VGDtLvF~y~~~--~HsV~~V~~~~Y~~C~~s~pi~~~-s~G~---~~v 94 (220)
.++|-.=.|.+ .|.+- .....+-+|..++|+-++. .|+...-+ + .++.. --|. ..+
T Consensus 130 kVig~QW~W~f----~Ypd~~i~t~n~l~lP~g~~V~~~lTS~DViHsf~IP~---l-------g~k~DaiPGr~n~~~~ 195 (315)
T 1fft_B 130 EVVSMDWKWFF----IYPEQGIATVNEIAFPANTPVYFKVTSNSVMNSFFIPR---L-------GSQIYAMAGMQTRLHL 195 (315)
T ss_dssp EEECCTTSCEE----ECTTTCCEEESBCCCCSSSEEEEEECBSSSCEEEEEGG---G-------TEEEEECBTSCEEEEE
T ss_pred EEeeeeccEEE----ecCCCcccccceEEEeCCCEEEEEEEeCCccceeeecc---c-------CcEEeecCCcceeeEE
Confidence 34555556665 23322 1234677888888888764 23333211 1 01111 1122 257
Q ss_pred EeeccccEEEEcCCCCCCCC---CCeEEEEec
Q 039191 95 TLKMAGHHYFLCGIPGHCQV---GQKVEINVL 123 (220)
Q Consensus 95 ~L~~pG~~YFiCgv~~HC~~---GmKl~I~V~ 123 (220)
+.+++|.||..|.. .|.. .|++.|.|.
T Consensus 196 ~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv 225 (315)
T 1fft_B 196 IANEPGTYDGISAS--YSGPGFSGMKFKAIAT 225 (315)
T ss_dssp ECCSCBCCEEBCCS--CCSTTTTTCCEECCBC
T ss_pred ecCCCeEEEEeccc--cchhhHHhccceEEEe
Confidence 88999999999986 6755 499998887
No 69
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Probab=47.43 E-value=18 Score=34.07 Aligned_cols=75 Identities=11% Similarity=0.081 Sum_probs=45.8
Q ss_pred CeeeeCCEEEeeecCCC----CcEEE----eC-ccCCC------CCCCCCCccccccCCcEEEeeccccEEEEcCCCCCC
Q 039191 48 KQFHVGDTLVFKYNKAM----HDVRQ----VS-HEDFQ------SCNAKAPIEEYTTGMDSITLKMAGHHYFLCGIPGHC 112 (220)
Q Consensus 48 ~tF~VGDtLvF~y~~~~----HsV~~----V~-~~~Y~------~C~~s~pi~~~s~G~~~v~L~~pG~~YFiCgv~~HC 112 (220)
.+++.||+|+.++.+.. ++|.- +. ....| .|-.. |. ..+=...|+++++|+|||=|....|=
T Consensus 69 i~~~~GD~v~v~v~N~l~~~~tsiHwHG~~~~~~~~~DG~~~~tq~~I~-P~--G~~~~Y~f~~~q~GT~wYH~H~~~q~ 145 (559)
T 2q9o_A 69 IVANWGDTVEVTVINNLVTNGTSIHWHGIXQKDTNLHDGANGVTECPIP-PK--GGQRTYRWRARQYGTSWYHSHFSAQY 145 (559)
T ss_dssp EEEETTCEEEEEEEEECSSCCBCEEEETCCCTTCGGGSCCBTTTBCCBC-TT--TEEEEEEEECCSCEEEEEEECSTTGG
T ss_pred EEEeCCCEEEEEEEeCCCCCCceEEcCCCccCCCCCcCCCCccccCccC-CC--CCeEEEEEECCCCEEEEEEEcccchh
Confidence 47889999999986532 34421 11 01111 13211 10 11112468888999999999988777
Q ss_pred CCCCeEEEEecCC
Q 039191 113 QVGQKVEINVLPG 125 (220)
Q Consensus 113 ~~GmKl~I~V~~~ 125 (220)
..||.-.|.|...
T Consensus 146 ~~Gl~G~liV~~~ 158 (559)
T 2q9o_A 146 GNGVVGTIQINGP 158 (559)
T ss_dssp GGTCEEEEEEECC
T ss_pred cCCceEEEEecCC
Confidence 7899888877654
No 70
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Probab=45.17 E-value=28 Score=32.62 Aligned_cols=75 Identities=17% Similarity=0.246 Sum_probs=46.7
Q ss_pred CeeeeCCEEEeeecCCC---------CcEEEeCccCCC------CCCCCCCccccccCCcEEEee-ccccEEEEcCCCCC
Q 039191 48 KQFHVGDTLVFKYNKAM---------HDVRQVSHEDFQ------SCNAKAPIEEYTTGMDSITLK-MAGHHYFLCGIPGH 111 (220)
Q Consensus 48 ~tF~VGDtLvF~y~~~~---------HsV~~V~~~~Y~------~C~~s~pi~~~s~G~~~v~L~-~pG~~YFiCgv~~H 111 (220)
.+++.||+|+.++.+.. |.+.+-.....| .|- +.-..+=...|+++ ++|+|||=|....|
T Consensus 36 i~~~~Gd~v~v~v~N~l~~~~tsiHwHG~~~~~~~~~DG~~~vtq~p----I~PG~~~~Y~f~~~~~~GT~wYH~H~~~q 111 (534)
T 1zpu_A 36 ITVNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDGVPFLTQCP----IAPGSTMLYNFTVDYNVGTYWYHSHTDGQ 111 (534)
T ss_dssp EEEETTCEEEEEEECCCSSCCBCCEEETCCCTTCGGGSCCBTTTBCC----BCTTCEEEEEEECSSCCEEEEEECCSSSG
T ss_pred EEEECCCEEEEEEEeCCCCCCeeEEcCCcccCCCCcccCCCccccCC----cCCCCeEEEEEEeCccceeEEEEEcCccc
Confidence 57899999999987642 222221000111 122 11111111367777 88999999999888
Q ss_pred CCCCCeEEEEecCCC
Q 039191 112 CQVGQKVEINVLPGA 126 (220)
Q Consensus 112 C~~GmKl~I~V~~~~ 126 (220)
=..|+.-.|.|....
T Consensus 112 ~~~Gl~G~liV~~~~ 126 (534)
T 1zpu_A 112 YEDGMKGLFIIKDDS 126 (534)
T ss_dssp GGGTCEEEEEEECTT
T ss_pred ccCcceeeEEeCCCC
Confidence 788999888887653
No 71
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=44.69 E-value=14 Score=31.35 Aligned_cols=30 Identities=17% Similarity=0.392 Sum_probs=24.7
Q ss_pred EEEeeccccEEEEcCCCCCCCCC---CeEEEEecC
Q 039191 93 SITLKMAGHHYFLCGIPGHCQVG---QKVEINVLP 124 (220)
Q Consensus 93 ~v~L~~pG~~YFiCgv~~HC~~G---mKl~I~V~~ 124 (220)
.++.+++|.||..|.. -|..| |++.|.|..
T Consensus 183 ~~~~~~~G~y~g~Cse--~CG~~Hs~M~~~v~vv~ 215 (227)
T 1v54_B 183 TLMSSRPGLYYGQCSE--ICGSNHSFMPIVLELVP 215 (227)
T ss_dssp EECCSSCEEEEECCCS--CCSTTGGGCCEEEEEEC
T ss_pred EEecCCcEEEEEEehh--hcccccccCeEEEEEEc
Confidence 5778999999999986 67665 999888864
No 72
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=44.21 E-value=15 Score=32.01 Aligned_cols=75 Identities=16% Similarity=0.186 Sum_probs=42.2
Q ss_pred CeeeeCCEEEeeecCC---CCcEEE-----eCccCCCCC-CC-CCCccccccCC---cEEEeeccccEEEEcCCCCC-C-
Q 039191 48 KQFHVGDTLVFKYNKA---MHDVRQ-----VSHEDFQSC-NA-KAPIEEYTTGM---DSITLKMAGHHYFLCGIPGH-C- 112 (220)
Q Consensus 48 ~tF~VGDtLvF~y~~~---~HsV~~-----V~~~~Y~~C-~~-s~pi~~~s~G~---~~v~L~~pG~~YFiCgv~~H-C- 112 (220)
.+++.||+|++++.+. .|++.- ......|.= .. ..++ .-|. ..|+.+++|++||-|..... .
T Consensus 36 i~~~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~p~~t~~~i---~PG~~~~y~f~~~~~Gt~wYH~H~~~~~~~ 112 (318)
T 3g5w_A 36 IHVMEGDDVTVNVTNMTTLPHTIHWHGMLQRGTWQSDGVPHATQHAI---EPGDTFTYKFKAEPAGTMWYHCHVNVNEHV 112 (318)
T ss_dssp EEEETTCEEEEEEEECSSSCBCCEEETCCCTTCGGGSCCBTTTBCCB---CTTCEEEEEEECCSCEEEEEECCSSHHHHH
T ss_pred EEEeCCCEEEEEEEeCCCCceeEEecCcCCCCCcccCCCcccccccC---CCCCEEEEEEEcCCCEEEEEEccCChhhhh
Confidence 4789999999998753 234421 110011100 00 0011 2222 36788899999999987421 1
Q ss_pred -CCCCeEEEEecCC
Q 039191 113 -QVGQKVEINVLPG 125 (220)
Q Consensus 113 -~~GmKl~I~V~~~ 125 (220)
..||.-.|.|...
T Consensus 113 ~~~Gl~G~lIV~~~ 126 (318)
T 3g5w_A 113 TMRGMWGPLIVEPK 126 (318)
T ss_dssp HHSCCEEEEEEECS
T ss_pred ccCCCEEEEEEcCC
Confidence 2699888888643
No 73
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Probab=43.98 E-value=21 Score=33.29 Aligned_cols=33 Identities=12% Similarity=0.159 Sum_probs=27.0
Q ss_pred EEEe-eccccEEEEcCCCCCCCCCCeEEEEecCC
Q 039191 93 SITL-KMAGHHYFLCGIPGHCQVGQKVEINVLPG 125 (220)
Q Consensus 93 ~v~L-~~pG~~YFiCgv~~HC~~GmKl~I~V~~~ 125 (220)
.|++ +++|+|||=|....|=..||.-.|.|...
T Consensus 117 ~f~~~~~~GT~wYH~H~~~q~~~Gl~G~liV~~~ 150 (521)
T 1v10_A 117 DFVVPGQAGTYWYHSHLSTQYCDGLRGAFVVYDP 150 (521)
T ss_dssp EEECTTCCEEEEEEECSTTGGGGTCEEEEEEECT
T ss_pred EEecCCCCccEEEEeccCCchhcCceEEEEEcCC
Confidence 5664 56899999999988878899999888754
No 74
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada}
Probab=42.16 E-value=28 Score=33.27 Aligned_cols=34 Identities=6% Similarity=-0.021 Sum_probs=28.0
Q ss_pred cEEEeeccccEEEEcCCCCCCCCCCeEEEEecCC
Q 039191 92 DSITLKMAGHHYFLCGIPGHCQVGQKVEINVLPG 125 (220)
Q Consensus 92 ~~v~L~~pG~~YFiCgv~~HC~~GmKl~I~V~~~ 125 (220)
..|+++++|+|||=|....+=..|+.-.|.|...
T Consensus 155 Y~f~~~q~GT~WYHsH~~~q~~~GL~G~lIV~~p 188 (580)
T 3sqr_A 155 YKFQVTQYGTTWYHSHFSLQYGDGLFGPLIINGP 188 (580)
T ss_dssp EEEECCCCEEEEEEECSTTGGGGTCEEEEEEECC
T ss_pred EEEECCCCcceEEeecccccccCcCEEEEEeeCc
Confidence 4688889999999999887777899888877643
No 75
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A
Probab=41.85 E-value=14 Score=33.70 Aligned_cols=74 Identities=9% Similarity=0.077 Sum_probs=44.5
Q ss_pred CeeeeCCEEEeeecCC---CCcE-----EEeCc-cCCCCCCCCCCccccccCCcEEEeec-cccEEEEcCC----CCCCC
Q 039191 48 KQFHVGDTLVFKYNKA---MHDV-----RQVSH-EDFQSCNAKAPIEEYTTGMDSITLKM-AGHHYFLCGI----PGHCQ 113 (220)
Q Consensus 48 ~tF~VGDtLvF~y~~~---~HsV-----~~V~~-~~Y~~C~~s~pi~~~s~G~~~v~L~~-pG~~YFiCgv----~~HC~ 113 (220)
.+++.||+|+.++.+. .++| .+-.. +.-..|-.. |-..+ ...|++++ +|+|||=|.. ..|=.
T Consensus 52 i~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~~~~DG~~~~~i~-PG~~~---~Y~f~~~~~~GT~wYH~H~~~~t~~q~~ 127 (451)
T 2uxt_A 52 IRVWKGDDVKLIYSNRLTENVSMTVAGLQVPGPLMGGPARMMS-PNADW---APVLPIRQNAATLWYHANTPNRTAQQVY 127 (451)
T ss_dssp EEEETTCEEEEEEEECSSSCBCEEEETCCCCGGGSCSGGGCBC-TTCEE---CCEEECCSCSEEEEEEECCTTTHHHHHH
T ss_pred EEEeCCCEEEEEEEECCCCCccEEECCccCCCCCCCCCcCcCC-CCCeE---EEEEEcCCCCcceEEecCCCCchhhhHh
Confidence 4688999999998754 2333 22111 111123221 11111 24788887 8999999987 33555
Q ss_pred CCCeEEEEecCC
Q 039191 114 VGQKVEINVLPG 125 (220)
Q Consensus 114 ~GmKl~I~V~~~ 125 (220)
.||--.|.|...
T Consensus 128 ~Gl~G~liV~~~ 139 (451)
T 2uxt_A 128 NGLAGMWLVEDE 139 (451)
T ss_dssp TTCEEEEEEECH
T ss_pred hcceEEEEEecC
Confidence 788888877654
No 76
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*
Probab=40.75 E-value=28 Score=32.58 Aligned_cols=76 Identities=14% Similarity=0.166 Sum_probs=46.8
Q ss_pred CeeeeCCEEEeeecCCC----CcE-----EEeCccCCCC-CCCC-CCccccccCC---cEEEeeccccEEEEcCCCCCCC
Q 039191 48 KQFHVGDTLVFKYNKAM----HDV-----RQVSHEDFQS-CNAK-APIEEYTTGM---DSITLKMAGHHYFLCGIPGHCQ 113 (220)
Q Consensus 48 ~tF~VGDtLvF~y~~~~----HsV-----~~V~~~~Y~~-C~~s-~pi~~~s~G~---~~v~L~~pG~~YFiCgv~~HC~ 113 (220)
.+++.||+|+.++.+.. ++| .+-.....|. -..+ .++ .-|. ..|+++++|+|||=|....+=.
T Consensus 36 I~~~~GD~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~~vtq~~I---~PG~s~tY~f~~~~~GT~wYHsH~~~q~~ 112 (552)
T 1aoz_A 36 IRANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASISQCAI---NPGETFFYNFTVDNPGTFFYHGHLGMQRS 112 (552)
T ss_dssp EEEETTCEEEEEEEECCSSCCBCEEEETCCCTTCGGGSCCBTTTBCCB---CTTCEEEEEEECCSCEEEEEEECSTTTGG
T ss_pred EEEeCCCEEEEEEEeCCCCCCeeEEeCCCccCCCcccCCCcccccCCc---CCCCeEEEEEECCCCEEEEEEECchhHHh
Confidence 57899999999886532 233 1111100111 0000 011 1222 4678889999999999887778
Q ss_pred CCCeEEEEecCCC
Q 039191 114 VGQKVEINVLPGA 126 (220)
Q Consensus 114 ~GmKl~I~V~~~~ 126 (220)
.||.-.|.|....
T Consensus 113 ~Gl~G~liV~~~~ 125 (552)
T 1aoz_A 113 AGLYGSLIVDPPQ 125 (552)
T ss_dssp GTCEEEEEEECCT
T ss_pred ccCeeeEEEeCCc
Confidence 8999888887653
No 77
>2hzs_I RNA polymerase II mediator complex subunit 8; beta barrel, channel, helix, transcription; 2.70A {Saccharomyces cerevisiae}
Probab=35.88 E-value=1.1 Score=25.89 Aligned_cols=19 Identities=37% Similarity=0.672 Sum_probs=14.6
Q ss_pred CCeeeeCCEEEeeecCCCC
Q 039191 47 GKQFHVGDTLVFKYNKAMH 65 (220)
Q Consensus 47 ~~tF~VGDtLvF~y~~~~H 65 (220)
.+.|.|.|.|.|.|....|
T Consensus 4 skpfnvddvlkftftgekh 22 (27)
T 2hzs_I 4 SKPFNVDDVLKFTFTGEKH 22 (27)
T ss_dssp --CCCHHHHHHHHHHCCCC
T ss_pred CCCcChhheEEEEeccccc
Confidence 3689999999999987654
No 78
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=34.72 E-value=15 Score=26.79 Aligned_cols=16 Identities=38% Similarity=0.893 Sum_probs=12.5
Q ss_pred CeeeeCCEEEee-ecCC
Q 039191 48 KQFHVGDTLVFK-YNKA 63 (220)
Q Consensus 48 ~tF~VGDtLvF~-y~~~ 63 (220)
..|++||.|+|. |..+
T Consensus 36 r~~~vGD~l~l~E~~~g 52 (83)
T 3iuw_A 36 RNFQVGDILILEEYMNG 52 (83)
T ss_dssp SCCCTTCEEEEEEEETT
T ss_pred cCCCCCCEEEEEEccCC
Confidence 459999999996 6543
No 79
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=34.12 E-value=10 Score=29.11 Aligned_cols=20 Identities=20% Similarity=0.506 Sum_probs=15.9
Q ss_pred ccCCCeeeeCCEEEeeecCC
Q 039191 44 WAEGKQFHVGDTLVFKYNKA 63 (220)
Q Consensus 44 WAs~~tF~VGDtLvF~y~~~ 63 (220)
.+..+..+.||.|+|....+
T Consensus 86 FV~~~~L~~GD~~~F~~~~~ 105 (130)
T 1wid_A 86 FVKEKNLRAGDVVSFSRSNG 105 (130)
T ss_dssp HHHHTTCCTTCEEEEEECCS
T ss_pred HHHHcCCCCCCEEEEEEecC
Confidence 44567889999999998763
No 80
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=33.86 E-value=22 Score=30.94 Aligned_cols=34 Identities=9% Similarity=0.057 Sum_probs=28.3
Q ss_pred EEEeeccccEEEEcCCCCCC-CCCCeEEEEecCCC
Q 039191 93 SITLKMAGHHYFLCGIPGHC-QVGQKVEINVLPGA 126 (220)
Q Consensus 93 ~v~L~~pG~~YFiCgv~~HC-~~GmKl~I~V~~~~ 126 (220)
.|+.+++|.|+|.|....|| ..||.-.|.|....
T Consensus 275 ~v~~~~pG~y~l~~h~~~~~~~~g~~a~l~~~g~~ 309 (327)
T 1kbv_A 275 EFKVDIPGNYTLVDHSIFRAFNKGALGQLKVEGAE 309 (327)
T ss_dssp EEEECSCEEEEEEESSTHHHHHSSCEEEEEEESCC
T ss_pred EEEeCCCeEEEEEeccccccccCCcEEEEEECCCC
Confidence 46778899999999999998 78998888886543
No 81
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Probab=32.44 E-value=47 Score=30.87 Aligned_cols=34 Identities=15% Similarity=0.179 Sum_probs=27.6
Q ss_pred cEEEe-eccccEEEEcCCCCCCCCCCeEEEEecCC
Q 039191 92 DSITL-KMAGHHYFLCGIPGHCQVGQKVEINVLPG 125 (220)
Q Consensus 92 ~~v~L-~~pG~~YFiCgv~~HC~~GmKl~I~V~~~ 125 (220)
..|++ +++|+|||=|....+=..|+.-.|.|...
T Consensus 96 Y~f~~~~~~GT~wYHsH~~~q~~~GL~G~lIV~~~ 130 (495)
T 3t6v_A 96 YNFNVPGMAGTYWYHSHLTTQYCDGLRGPFVVYDP 130 (495)
T ss_dssp EEEECTTCCEEEEEEECSTTGGGGTCEEEEEEECT
T ss_pred EEEEeCCCCceeeeeccchhHHhcCceEEEEEcCc
Confidence 35777 67899999999887777899988888643
No 82
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2 Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB: 3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A* 2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A* 4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Probab=31.87 E-value=48 Score=30.86 Aligned_cols=34 Identities=12% Similarity=0.158 Sum_probs=27.5
Q ss_pred cEEEe-eccccEEEEcCCCCCCCCCCeEEEEecCC
Q 039191 92 DSITL-KMAGHHYFLCGIPGHCQVGQKVEINVLPG 125 (220)
Q Consensus 92 ~~v~L-~~pG~~YFiCgv~~HC~~GmKl~I~V~~~ 125 (220)
..|++ +++|+|||=|....+=..|+.-.|.|...
T Consensus 95 Y~f~~~~~~GT~wYHsH~~~q~~~GL~G~lIV~~~ 129 (499)
T 3pxl_A 95 YDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDP 129 (499)
T ss_dssp EEEECSSCCEEEEEEECSTTGGGGTCEEEEEEECT
T ss_pred EEEEcCCCCceeeeeccchhHHhccceeEEEEcCC
Confidence 35777 67899999999887777899988888643
No 83
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=31.15 E-value=23 Score=36.19 Aligned_cols=76 Identities=18% Similarity=0.146 Sum_probs=50.8
Q ss_pred CCeeeeCCEEEeeecC-----CCCcEEEeC------ccCCCCCCCCCCccccccCCcEEEeeccccEEEEcCCCCCCCCC
Q 039191 47 GKQFHVGDTLVFKYNK-----AMHDVRQVS------HEDFQSCNAKAPIEEYTTGMDSITLKMAGHHYFLCGIPGHCQVG 115 (220)
Q Consensus 47 ~~tF~VGDtLvF~y~~-----~~HsV~~V~------~~~Y~~C~~s~pi~~~s~G~~~v~L~~pG~~YFiCgv~~HC~~G 115 (220)
..++..||.|+.+-.. ..|+|.+-. ...++.|...- .+.-...++.+.+|++++-|.+..|=..|
T Consensus 633 ~l~~~~gd~v~~~v~~~g~~~~~Hgl~~~g~t~~~dG~~~~t~~i~p----g~~~t~~~~~~~~Gt~~~h~h~~~~~~~G 708 (1065)
T 2j5w_A 633 GLTMCKGDSVVWYLFSAGNEADVHGIYFSGNTYLWRGERRDTANLFP----QTSLTLHMWPDTEGTFNVECLTTDHYTGG 708 (1065)
T ss_dssp CCEEETTCCEEEEEECCCSTTCCEEEEETTCCEEETTEEESEEEECT----TCEEEEEECCCSCEEEEEEECSHHHHHTT
T ss_pred ceEEeCCCEEEEEEEcCCCcceEEeeEEeCCceeecCeecceEeecC----CceEEEEEecCCCeEEEEecCCCcccCCC
Confidence 3689999999887653 246665432 11234454321 11112457777899999999999988999
Q ss_pred CeEEEEecCCC
Q 039191 116 QKVEINVLPGA 126 (220)
Q Consensus 116 mKl~I~V~~~~ 126 (220)
|+..+.|....
T Consensus 709 m~g~~~V~~~~ 719 (1065)
T 2j5w_A 709 MKQKYTVNQCR 719 (1065)
T ss_dssp CEEEEEEECCS
T ss_pred cEEEEEEcCCc
Confidence 99999887653
No 84
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=29.74 E-value=16 Score=27.88 Aligned_cols=11 Identities=36% Similarity=0.872 Sum_probs=9.9
Q ss_pred CeeeeCCEEEe
Q 039191 48 KQFHVGDTLVF 58 (220)
Q Consensus 48 ~tF~VGDtLvF 58 (220)
+.+++||.|+|
T Consensus 32 ~~ikvGD~I~f 42 (109)
T 2z0t_A 32 RQIKPGDIIIF 42 (109)
T ss_dssp GGCCTTCEEEE
T ss_pred hcCCCCCEEEE
Confidence 37899999999
No 85
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=28.58 E-value=23 Score=25.70 Aligned_cols=20 Identities=15% Similarity=0.406 Sum_probs=15.5
Q ss_pred ccCCCeeeeCCEEEeeecCC
Q 039191 44 WAEGKQFHVGDTLVFKYNKA 63 (220)
Q Consensus 44 WAs~~tF~VGDtLvF~y~~~ 63 (220)
.+.-..+++||.|.|.+...
T Consensus 56 ~~~l~~lk~Gd~V~F~~~~~ 75 (88)
T 2vb2_X 56 QTKMSEIKTGDKVAFNFVQQ 75 (88)
T ss_dssp TCEECCCCTTCEEEEEEEEE
T ss_pred hhhhhcCCCCCEEEEEEEEe
Confidence 33346899999999999753
No 86
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=28.44 E-value=23 Score=25.16 Aligned_cols=16 Identities=19% Similarity=0.598 Sum_probs=13.8
Q ss_pred CeeeeCCEEEeeecCC
Q 039191 48 KQFHVGDTLVFKYNKA 63 (220)
Q Consensus 48 ~tF~VGDtLvF~y~~~ 63 (220)
..+++||.|.|.+...
T Consensus 52 ~~lk~Gd~V~F~~~~~ 67 (80)
T 2qcp_X 52 SEIKTGDKVAFNFVQQ 67 (80)
T ss_dssp CCCCTTCEEEEEEEEE
T ss_pred hcCCCCCEEEEEEEEe
Confidence 5799999999999753
No 87
>4dny_A Metalloprotease STCE; metzincin, bacterial zinc metalloprotease, O-linked glycoPro hydrolase; 1.61A {Escherichia coli}
Probab=27.91 E-value=20 Score=28.19 Aligned_cols=46 Identities=13% Similarity=0.154 Sum_probs=25.4
Q ss_pred eCCEEEeeecCCCCcEEEeCccCCCCCCCCCCccccccCCcEEEeeccccEEEEcCC
Q 039191 52 VGDTLVFKYNKAMHDVRQVSHEDFQSCNAKAPIEEYTTGMDSITLKMAGHHYFLCGI 108 (220)
Q Consensus 52 VGDtLvF~y~~~~HsV~~V~~~~Y~~C~~s~pi~~~s~G~~~v~L~~pG~~YFiCgv 108 (220)
.|+.|+|+-.++.++-+..+.. ..+.++|... .+.-.+-.|++.+.
T Consensus 77 ~gK~V~~~S~AgY~S~V~y~~~----------svtl~rG~t~-~F~y~~g~Wv~~gd 122 (126)
T 4dny_A 77 EGKMVRFVSSAGYSSTVFYGDR----------KVTLSVGNTL-LFKYVNGQWFRSGE 122 (126)
T ss_dssp TTCEEEEEEECSSCEEEEETTE----------EEEECTTCEE-EEEEETTEEEETTC
T ss_pred CCCEEEEEEecCccEEEEECCc----------EEEecCCCEE-EEEEcCCEEEEccc
Confidence 6788888877775555544322 1245666542 22224566666654
No 88
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=27.10 E-value=16 Score=27.92 Aligned_cols=12 Identities=33% Similarity=0.800 Sum_probs=10.3
Q ss_pred CeeeeCCEEEee
Q 039191 48 KQFHVGDTLVFK 59 (220)
Q Consensus 48 ~tF~VGDtLvF~ 59 (220)
+.+++||.|+|+
T Consensus 33 ~~i~vGD~I~f~ 44 (113)
T 1xne_A 33 KDIKRGDKIIFN 44 (113)
T ss_dssp TTCCTTCEEEET
T ss_pred hccCCCCEEEEc
Confidence 378999999994
No 89
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=26.64 E-value=35 Score=30.60 Aligned_cols=35 Identities=9% Similarity=0.050 Sum_probs=28.9
Q ss_pred EEEeeccccEEEEcCCCCCC-CCCCeEEEEecCCCC
Q 039191 93 SITLKMAGHHYFLCGIPGHC-QVGQKVEINVLPGAS 127 (220)
Q Consensus 93 ~v~L~~pG~~YFiCgv~~HC-~~GmKl~I~V~~~~s 127 (220)
.|+.+++|.|+|.|....|+ ..||...+.|.....
T Consensus 265 ~v~~~~~G~y~~~~~~~~~~~~~g~~a~l~v~~~~~ 300 (442)
T 2zoo_A 265 EFKVEVPGTFILVDHSIFRAFNKGALAMLKVEGPDD 300 (442)
T ss_dssp EEECCSCEEEEEEESSTHHHHTTSCEEEEEEESCCC
T ss_pred EEEcCCCCeEEEEecccccccccCceEEEEecCCCC
Confidence 47778899999999998887 789988888876543
No 90
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=26.16 E-value=53 Score=28.31 Aligned_cols=34 Identities=12% Similarity=0.004 Sum_probs=27.5
Q ss_pred EEEeeccccEEEEcCCCC-CCCCCCeEEEEecCCC
Q 039191 93 SITLKMAGHHYFLCGIPG-HCQVGQKVEINVLPGA 126 (220)
Q Consensus 93 ~v~L~~pG~~YFiCgv~~-HC~~GmKl~I~V~~~~ 126 (220)
.|+.+++|.|+|.|.... |=..||.-.|.|....
T Consensus 292 ~v~~~~pG~y~~~~h~~~~h~~~Gm~~~~~V~~~~ 326 (340)
T 2bw4_A 292 FYTFRQPGVYAYVNHNLIEAFELGAAGHFKVTGEW 326 (340)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTSCEEEEEEESCC
T ss_pred EEECCCCeeeEEEcCchHHHHhCCCEEEEEECCCC
Confidence 467788999999999874 5578999889887644
No 91
>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*
Probab=26.14 E-value=90 Score=26.81 Aligned_cols=80 Identities=15% Similarity=0.141 Sum_probs=0.0
Q ss_pred CCeeeeCCEEEeeecCC--------CCcEEEeCccCCCCCCCCCCccccccCCcEEEeecc-------------ccEEEE
Q 039191 47 GKQFHVGDTLVFKYNKA--------MHDVRQVSHEDFQSCNAKAPIEEYTTGMDSITLKMA-------------GHHYFL 105 (220)
Q Consensus 47 ~~tF~VGDtLvF~y~~~--------~HsV~~V~~~~Y~~C~~s~pi~~~s~G~~~v~L~~p-------------G~~YFi 105 (220)
..++++||+|++++.+. .|.+..-...|=.. ....++.--.+=...|+++.| |+|||-
T Consensus 43 ~i~~~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~dG~~-~~~~~i~PG~~~~Y~~~~~~P~~~~~~~~~~~~~gt~~YH 121 (313)
T 3tas_A 43 LIELNEGDTLHIEFENTMDVPVSLHVHGLDYEISSDGTK-QSRSDVEPGGTRTYTWRTHVPGRRADGTWRAGSAGYWHYH 121 (313)
T ss_dssp CEEEETTCEEEEEEEECSSSCBCCEESSSBCCGGGSCST-TTTCCBCTTCEEEEEEBCCCCEECTTSCEECCSCEEEEEE
T ss_pred eEEEECCCEEEEEEEECCCCCccEeecCCcCCccCCCCc-cccCCcCCCCEEEEEEEeccCCccccccccCCCceEEEEe
Q ss_pred cCCCCCCC------CCCeEEEEecCCCC
Q 039191 106 CGIPGHCQ------VGQKVEINVLPGAS 127 (220)
Q Consensus 106 Cgv~~HC~------~GmKl~I~V~~~~s 127 (220)
|.+.+.=+ .||.-.|.|.....
T Consensus 122 ~h~~~~~~~~~~~~~Gl~G~liV~~~~~ 149 (313)
T 3tas_A 122 DHVVGTEHGTGGIRNGLYGPVIVRRKGD 149 (313)
T ss_dssp CSSSSSTTCHHHHHHTCEEEEEEECTTC
T ss_pred ecCcccccchhhhhccccCceEeecccc
No 92
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*
Probab=25.43 E-value=39 Score=33.41 Aligned_cols=29 Identities=7% Similarity=-0.081 Sum_probs=23.3
Q ss_pred ccccEEEEcCCCC--CCCCCCeEEEEecCCC
Q 039191 98 MAGHHYFLCGIPG--HCQVGQKVEINVLPGA 126 (220)
Q Consensus 98 ~pG~~YFiCgv~~--HC~~GmKl~I~V~~~~ 126 (220)
..|++||-|.+.. |...||.-.|.|....
T Consensus 269 ~~Gt~wYHsh~~~~~q~~~GL~G~liV~~~~ 299 (770)
T 2r7e_B 269 DCKAWAYSSDVDLEKDVHSGLIGPLLVCHTN 299 (770)
T ss_dssp SEEEEEECCCSSSSHHHHTSCCEEEEEECST
T ss_pred CCeeEEeeccCCcHHHHhCCceeeEEECCCc
Confidence 6799999998875 6778999888887554
No 93
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=25.22 E-value=77 Score=22.24 Aligned_cols=46 Identities=13% Similarity=0.320 Sum_probs=29.1
Q ss_pred CeeeeCCEEEeeecCCCCcEEEeCccCCCCCCCCCCc--cccccCCcEEEeec
Q 039191 48 KQFHVGDTLVFKYNKAMHDVRQVSHEDFQSCNAKAPI--EEYTTGMDSITLKM 98 (220)
Q Consensus 48 ~tF~VGDtLvF~y~~~~HsV~~V~~~~Y~~C~~s~pi--~~~s~G~~~v~L~~ 98 (220)
.+|++||++.=+| +|.+.-+++--.+++ ..+++ -.|.+| ++.+|..
T Consensus 8 ~~~~vgd~VmaRW-~Gd~~yYparI~Si~---s~~~~Y~V~fKdg-T~e~L~~ 55 (66)
T 2l8d_A 8 RKYADGEVVMGRW-PGSVLYYEVQVTSYD---DASHLYTVKYKDG-TELALKE 55 (66)
T ss_dssp SSSCSSCEEEEEC-TTSSCEEEEEEEEEE---TTTTEEEEEETTS-CEEEEEG
T ss_pred eEeecCCEEEEEc-CCCccceEEEEEEec---cCCceEEEEecCC-CEEeech
Confidence 6899999999999 665666665333443 44443 346674 4556654
No 94
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=24.76 E-value=28 Score=33.15 Aligned_cols=32 Identities=6% Similarity=0.094 Sum_probs=28.3
Q ss_pred EEEeeccccEEEEcCCCCCCCCCCeEEEEecC
Q 039191 93 SITLKMAGHHYFLCGIPGHCQVGQKVEINVLP 124 (220)
Q Consensus 93 ~v~L~~pG~~YFiCgv~~HC~~GmKl~I~V~~ 124 (220)
.|+.+++|.++|-|.+..|-..||...+.|..
T Consensus 296 ~~~~~~pG~w~~hch~~~h~~~Gm~~~~~V~~ 327 (647)
T 1sdd_B 296 EMKASKPGWWLLDTEVGEIQRAGMQTPFLIVD 327 (647)
T ss_dssp EEECCSSEEEEEECCCHHHHTTTCEEEEEEEC
T ss_pred EEEeccceEeecccCcccccccccccceeeec
Confidence 46678899999999999999999999999964
No 95
>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A {Pyrobaculum aerophilum}
Probab=24.71 E-value=21 Score=32.59 Aligned_cols=75 Identities=17% Similarity=0.088 Sum_probs=44.0
Q ss_pred CeeeeCCEEEeeecCC---CCcE-----EEeCc-cCCCCCCCCCCccccccCCcEEEee-ccccEEEEcCC----CCCCC
Q 039191 48 KQFHVGDTLVFKYNKA---MHDV-----RQVSH-EDFQSCNAKAPIEEYTTGMDSITLK-MAGHHYFLCGI----PGHCQ 113 (220)
Q Consensus 48 ~tF~VGDtLvF~y~~~---~HsV-----~~V~~-~~Y~~C~~s~pi~~~s~G~~~v~L~-~pG~~YFiCgv----~~HC~ 113 (220)
.+++.||+|+.++.+. .++| .+-+. +....|-.. |-..+ ...|+++ ++|+|||=|.. ..+-.
T Consensus 40 i~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~~~~DG~~~~~i~-PG~~~---~Y~f~~~~~~GT~wYH~H~~~~~~~q~~ 115 (448)
T 3aw5_A 40 IILRRGQRVDMTLKNKLTEPTIVHWHGFDVNWHNDAHPSFAIT-PGESY---NYSFDVVNRAGTYLYHPHPHGLTAKQFY 115 (448)
T ss_dssp EEEETTCEEEEEEEECSSSCBCEEEETCCCCHHHHTCGGGCBC-TTCEE---EEEEECCSCSEEEEEEECCTTTHHHHHH
T ss_pred EEEeCCCEEEEEEEECCCCceeEEeCCccCCCccCCCCCccCC-CCCEE---EEEEEcCCCCCceEeccCCCCchHHHHh
Confidence 4789999999998754 2333 21111 111113221 11111 1367777 68999999983 33555
Q ss_pred CCCeEEEEecCCC
Q 039191 114 VGQKVEINVLPGA 126 (220)
Q Consensus 114 ~GmKl~I~V~~~~ 126 (220)
.||.-.|.|....
T Consensus 116 ~Gl~G~liV~~~~ 128 (448)
T 3aw5_A 116 MGQLGLVIVEDSG 128 (448)
T ss_dssp TTCCEEEEEECTT
T ss_pred ccceEEEEEeCCc
Confidence 8998888887543
No 96
>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_A*
Probab=24.45 E-value=62 Score=31.76 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=29.0
Q ss_pred EEEeeccccEEEEcCCCCCCCCCCeEEEEecCCC
Q 039191 93 SITLKMAGHHYFLCGIPGHCQVGQKVEINVLPGA 126 (220)
Q Consensus 93 ~v~L~~pG~~YFiCgv~~HC~~GmKl~I~V~~~~ 126 (220)
.++.+++|.+.|-|-+..|=..||.-.+.|....
T Consensus 298 ~~~~~~pG~w~~hCH~~~H~~~GM~~~~~V~~~~ 331 (742)
T 2r7e_A 298 QTLLMDLGQFLLFCHISSHQHDGMEAYVKVDSCP 331 (742)
T ss_dssp EECCCSCSEECCCCCSSSSSTTSCCBCEEECCCC
T ss_pred EEEeCCCeeEEEEeCChhHHhCCCeEEEEEecCC
Confidence 4666789999999999999999998888887654
No 97
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*
Probab=23.54 E-value=8.9 Score=37.98 Aligned_cols=72 Identities=17% Similarity=0.210 Sum_probs=44.8
Q ss_pred CeeeeCCEEEeeecCC-----CCcEE------Ee-CccCCCCCCCCCCccccccCCc--EEEeeccccEEEEcCCCCCCC
Q 039191 48 KQFHVGDTLVFKYNKA-----MHDVR------QV-SHEDFQSCNAKAPIEEYTTGMD--SITLKMAGHHYFLCGIPGHCQ 113 (220)
Q Consensus 48 ~tF~VGDtLvF~y~~~-----~HsV~------~V-~~~~Y~~C~~s~pi~~~s~G~~--~v~L~~pG~~YFiCgv~~HC~ 113 (220)
.+++.||++++..-+. .|.+. +| ....+ ..+.+...-.+.. .|+.+++|.+.|.|.+..|-.
T Consensus 370 l~v~~Ge~vr~rliN~g~~~~~H~fHlhGh~f~Vv~~dg~----~~Dtv~l~Pg~~~~v~~~ad~pG~w~~hcH~~~H~~ 445 (770)
T 2r7e_B 370 LVMAQDQRIRWYLLSMGSNENIHSIHFSGHVFTVRKKEEY----KMALYNLYPGVFETVEMLPSKAGIWRVECLIGEHLH 445 (770)
T ss_dssp CCCCSSSCEEEECCCCCSSSCCCEEEBSSCCEECCSSSCC----EESEEECCTTCCCEEEECCSSCBCCCBCCCSHHHHT
T ss_pred eEEeCCCEEEEEEEeCCCCcceEEEEEcCCEEEEEecCCc----eeeEEEECCCeEEEEEEEeCCCCceEEEeccccccc
Confidence 4688899998887542 34442 22 11111 1111212222222 356678999999999999999
Q ss_pred CCCeEEEEec
Q 039191 114 VGQKVEINVL 123 (220)
Q Consensus 114 ~GmKl~I~V~ 123 (220)
.||+..+.|.
T Consensus 446 ~GM~~~~~V~ 455 (770)
T 2r7e_B 446 AGMSTLFLVY 455 (770)
T ss_dssp TBCCCCCCBC
T ss_pred cccccccccc
Confidence 9999888884
No 98
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=23.11 E-value=87 Score=22.07 Aligned_cols=46 Identities=15% Similarity=0.275 Sum_probs=29.3
Q ss_pred CeeeeCCEEEeeecCCCCcEEEeCccCCCCCCCCCCc--cccccCCcEEEeec
Q 039191 48 KQFHVGDTLVFKYNKAMHDVRQVSHEDFQSCNAKAPI--EEYTTGMDSITLKM 98 (220)
Q Consensus 48 ~tF~VGDtLvF~y~~~~HsV~~V~~~~Y~~C~~s~pi--~~~s~G~~~v~L~~ 98 (220)
.+|++||++.=+|. +.+.-+++--..++ ..+++ -.|.+| ++.+|..
T Consensus 11 ~~f~vgd~VmaRW~-Gd~~yYparItSit---s~~~~Y~VkfKdg-T~e~L~~ 58 (68)
T 2dig_A 11 RKFADGEVVRGRWP-GSSLYYEVEILSHD---STSQLYTVKYKDG-TELELKE 58 (68)
T ss_dssp CSSCSSCEEEEECT-TTCCEEEEEEEEEE---TTTTEEEEECTTS-CEEEEET
T ss_pred eEeecCCEEEEEcc-CCccceEEEEEEec---cCCceEEEEecCC-CEEEech
Confidence 68999999999999 65666665333343 44443 346674 4556653
No 99
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=23.06 E-value=66 Score=27.84 Aligned_cols=34 Identities=12% Similarity=0.056 Sum_probs=27.7
Q ss_pred EEEeeccccEEEEcCCCCCCC------CCCeEEEEecCCC
Q 039191 93 SITLKMAGHHYFLCGIPGHCQ------VGQKVEINVLPGA 126 (220)
Q Consensus 93 ~v~L~~pG~~YFiCgv~~HC~------~GmKl~I~V~~~~ 126 (220)
.|+.+.+|.+.|-|-+..|-. .||...|.+....
T Consensus 239 ~~~a~~pG~w~~hCH~~~H~~~g~~~~~Gm~~~i~~~g~~ 278 (318)
T 3g5w_A 239 ILNMDNPGLWMIHDHVDTHTTNGDKPDGGIMTTIEYEEVG 278 (318)
T ss_dssp EEECCSCSEEEEEESSGGGSCBTTBSSCBSEEEEEETTTC
T ss_pred EEECCCCeeEEEEeccHHHhhccCcCCCCCEEEEEECCCC
Confidence 467788999999999999997 5777888886554
No 100
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=22.79 E-value=40 Score=24.81 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=22.8
Q ss_pred EEEecCCCCceeeCCCCcccccCCCeeeeCCEEEee
Q 039191 24 TYTVGDDAGWTIQGHIDYSKWAEGKQFHVGDTLVFK 59 (220)
Q Consensus 24 ~~~VGg~~GW~~~~~~~Y~~WAs~~tF~VGDtLvF~ 59 (220)
+.+|||+.| ....+-|-.. |+.||+|.++
T Consensus 41 ~~~l~DeTG-----~I~~tlW~~~--l~~Gdvv~i~ 69 (106)
T 2k75_A 41 QGYIEDDTA-----RIRISSFGKQ--LQDSDVVRID 69 (106)
T ss_dssp EEEEECSSC-----EEEEEEESSC--CCTTEEEEEE
T ss_pred EEEEEcCCC-----eEEEEEEcCc--cCCCCEEEEE
Confidence 467888777 3457788876 9999999988
No 101
>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A 2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A
Probab=22.70 E-value=1e+02 Score=27.73 Aligned_cols=76 Identities=17% Similarity=0.214 Sum_probs=0.0
Q ss_pred eeeeCCEEEeeecCCCCcEEEe-CccCCCCCCCCCCccccccCCc---EEEe--eccccEEEEcCCCC----CCCCCCeE
Q 039191 49 QFHVGDTLVFKYNKAMHDVRQV-SHEDFQSCNAKAPIEEYTTGMD---SITL--KMAGHHYFLCGIPG----HCQVGQKV 118 (220)
Q Consensus 49 tF~VGDtLvF~y~~~~HsV~~V-~~~~Y~~C~~s~pi~~~s~G~~---~v~L--~~pG~~YFiCgv~~----HC~~GmKl 118 (220)
+++.||+|+.++.+....-.-+ -..-.......+......-|.+ .|++ +++|+|||-|...+ |=..||.-
T Consensus 50 ~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~~~~DG~~~~I~PG~~~~Y~f~~~~~~~GT~wYH~H~~~~t~~q~~~Gl~G 129 (439)
T 2xu9_A 50 RVRPRDTVRLTLENRLPEPTNLHWHGLPISPKVDDPFLEIPPGESWTYEFTVPKELAGTFWYHPHLHGRVAPQLFAGLLG 129 (439)
T ss_dssp EECTTCEEEEEEEECSSSCBCCEEETCCCCTTTSCTTCCBCTTCEEEEEEECCSSCCEEEEEECCCTTSHHHHHHTTCCE
T ss_pred EEeCCCEEEEEEEECCCCCcceEeCCCCCCccccCCcccCCCCCeEEEEEecCCCCCcceEeccCCCCchHHHHHhhCeE
Q ss_pred EEEecC
Q 039191 119 EINVLP 124 (220)
Q Consensus 119 ~I~V~~ 124 (220)
.|.|..
T Consensus 130 ~liV~~ 135 (439)
T 2xu9_A 130 ALVVES 135 (439)
T ss_dssp EEEECC
T ss_pred EEEEcC
No 102
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=22.66 E-value=74 Score=26.78 Aligned_cols=28 Identities=18% Similarity=0.076 Sum_probs=20.3
Q ss_pred cccEEEEcCCCC------CCCCCCeEEEEecCCC
Q 039191 99 AGHHYFLCGIPG------HCQVGQKVEINVLPGA 126 (220)
Q Consensus 99 pG~~YFiCgv~~------HC~~GmKl~I~V~~~~ 126 (220)
.|++||-|...+ |=..||.-.|.|....
T Consensus 109 ~gt~~YH~h~~~~~~~~~~~~~Gl~G~liV~~~~ 142 (276)
T 3kw8_A 109 AGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRKG 142 (276)
T ss_dssp CEEEEEECSSSSSTTCHHHHHHTCEEEEEEECTT
T ss_pred CEEEEEecCccccccchhhhhCccEEEEEEecCC
Confidence 478889998754 3456998888887654
No 103
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=22.49 E-value=89 Score=26.70 Aligned_cols=34 Identities=6% Similarity=-0.036 Sum_probs=24.4
Q ss_pred EEEeecc----------ccEEEEcCCCC--CCCCCCeEEEEecCCC
Q 039191 93 SITLKMA----------GHHYFLCGIPG--HCQVGQKVEINVLPGA 126 (220)
Q Consensus 93 ~v~L~~p----------G~~YFiCgv~~--HC~~GmKl~I~V~~~~ 126 (220)
.|++++. |++||-|.... +-..|+.-.|.|....
T Consensus 123 ~f~~~~~~gp~~~d~~~GT~wYHsH~~~~~q~~~GL~G~liV~~~~ 168 (306)
T 1sdd_A 123 EWIISEHSGPTHDDPPCLTHIYYSYVNLVEDFNSGLIGPLLICKKG 168 (306)
T ss_dssp EEECCGGGSCCSSSCSEEEEEEECCSSSHHHHHTTCCEEEEEECTT
T ss_pred EEEeCCccCCCCCCCCceEEEEeccCCchhhhccCceEEEEEccCC
Confidence 5667654 79999998654 4467998888776543
No 104
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=21.86 E-value=58 Score=22.93 Aligned_cols=18 Identities=22% Similarity=0.349 Sum_probs=14.4
Q ss_pred CCCeeeeCCEEEeeecCC
Q 039191 46 EGKQFHVGDTLVFKYNKA 63 (220)
Q Consensus 46 s~~tF~VGDtLvF~y~~~ 63 (220)
-+++|.+||.|.|--..+
T Consensus 26 ~rN~f~~GD~iEi~~P~g 43 (89)
T 4he6_A 26 QRNHFRPGDEVEFFGPEI 43 (89)
T ss_dssp ESSCBCTTCEEEEESTTS
T ss_pred EcCCcCCCCEEEEEcCCC
Confidence 357999999999876654
No 105
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=21.02 E-value=76 Score=23.30 Aligned_cols=31 Identities=23% Similarity=0.576 Sum_probs=23.2
Q ss_pred EEEecCCCCceeeCCCCccccc--CCCeeeeCCEEEee
Q 039191 24 TYTVGDDAGWTIQGHIDYSKWA--EGKQFHVGDTLVFK 59 (220)
Q Consensus 24 ~~~VGg~~GW~~~~~~~Y~~WA--s~~tF~VGDtLvF~ 59 (220)
..++||..| ...++.|. ....|+.||+|.++
T Consensus 38 ~~~l~DeTG-----~I~~t~W~~~~~~~~~~G~~V~i~ 70 (109)
T 2kbn_A 38 VGLLGDETG-----IIKFTIWKNAELPLLEQGESYLLR 70 (109)
T ss_dssp EEEEECTTC-----CEEEEEEGGGCCCCCCTTCEEEEE
T ss_pred EEEEECCCC-----eEEEEEECcccccccCCCCEEEEE
Confidence 357888777 34577887 33489999999988
No 106
>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous oxidase; 1.95A {Campylobacter jejuni subsp}
Probab=20.44 E-value=55 Score=30.39 Aligned_cols=75 Identities=13% Similarity=0.079 Sum_probs=0.0
Q ss_pred eeeeCCEEEeeecCC--------CCcEEEe-CccCCCCCCCCCCccccccCCcEEEeec--cccEEEEcCC----CCCCC
Q 039191 49 QFHVGDTLVFKYNKA--------MHDVRQV-SHEDFQSCNAKAPIEEYTTGMDSITLKM--AGHHYFLCGI----PGHCQ 113 (220)
Q Consensus 49 tF~VGDtLvF~y~~~--------~HsV~~V-~~~~Y~~C~~s~pi~~~s~G~~~v~L~~--pG~~YFiCgv----~~HC~ 113 (220)
+++.||+|+.++.+. .|.+.+- ..+..-.|-.. |-..++ ..|++.+ +|+|||=|.. ..|=.
T Consensus 85 r~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~~~DG~pq~~I~-PG~s~~---Y~f~~~~~~~GT~WYH~H~~~~t~~q~~ 160 (481)
T 3zx1_A 85 EVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPIL-AGEERI---YRFEIPQDSAGTYWYHPHPHYTASKQVF 160 (481)
T ss_dssp EEETTCEEEEEEEECSSSCBCCEEETCCCCGGGSCCTTSCBC-TTCEEE---EEEECCTTCCEEEEEECCCTTTHHHHHH
T ss_pred EEECCcEEEEEEEeCCCCCeeEEecCcccCCccCCCccCcCC-CCCeEE---EEEeCCCCCCceEEEeecCCCcchhhhh
Q ss_pred CCCeEEEEecCCCC
Q 039191 114 VGQKVEINVLPGAS 127 (220)
Q Consensus 114 ~GmKl~I~V~~~~s 127 (220)
.|+.-.|.|.....
T Consensus 161 ~GL~G~lIV~~~~~ 174 (481)
T 3zx1_A 161 MGLAGAFVIKAKKD 174 (481)
T ss_dssp TTCCEEEEEECSSC
T ss_pred ccceEEEEEcCccc
Done!