BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039195
(195 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RCK6|SYT10_PONAB Synaptotagmin-10 OS=Pongo abelii GN=SYT10 PE=2 SV=1
Length = 523
Score = 33.9 bits (76), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 12/68 (17%)
Query: 113 ESVGRKEVDVAGCKTVYLSESFAHEMYDGQLFIKLEKCFNLPAMDPWITHACSTGFLGTS 172
+S G ++ DV C + + + +E + L +K+ K +LPA D F GTS
Sbjct: 220 DSEGNQKEDVKICGKLNFTLQYDYE--NELLVVKIIKALDLPAKD----------FTGTS 267
Query: 173 DPYVVMEL 180
DPYV M L
Sbjct: 268 DPYVKMYL 275
>sp|Q6XYQ8|SYT10_HUMAN Synaptotagmin-10 OS=Homo sapiens GN=SYT10 PE=2 SV=1
Length = 523
Score = 33.5 bits (75), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 12/68 (17%)
Query: 113 ESVGRKEVDVAGCKTVYLSESFAHEMYDGQLFIKLEKCFNLPAMDPWITHACSTGFLGTS 172
+S G + DV C + + + +E + L +K+ K +LPA D F GTS
Sbjct: 220 DSEGNQNEDVKICGKLNFTLQYDYE--NELLVVKIIKALDLPAKD----------FTGTS 267
Query: 173 DPYVVMEL 180
DPYV M L
Sbjct: 268 DPYVKMYL 275
>sp|O08625|SYT10_RAT Synaptotagmin-10 OS=Rattus norvegicus GN=Syt10 PE=2 SV=2
Length = 523
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 12/68 (17%)
Query: 113 ESVGRKEVDVAGCKTVYLSESFAHEMYDGQLFIKLEKCFNLPAMDPWITHACSTGFLGTS 172
+S G ++ DV C + + + +E + L +K+ K +LPA D F GTS
Sbjct: 220 DSEGNRKDDVKTCGKLNFALQYDYE--NELLVVKIIKALDLPAKD----------FTGTS 267
Query: 173 DPYVVMEL 180
DPYV + L
Sbjct: 268 DPYVKIYL 275
>sp|Q9R0N4|SYT10_MOUSE Synaptotagmin-10 OS=Mus musculus GN=Syt10 PE=1 SV=1
Length = 523
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 12/68 (17%)
Query: 113 ESVGRKEVDVAGCKTVYLSESFAHEMYDGQLFIKLEKCFNLPAMDPWITHACSTGFLGTS 172
+S G ++ DV C + + + +E + L +K+ K +LPA D F GTS
Sbjct: 220 DSEGNRKDDVKTCGKLNFALQYDYE--NELLVVKIIKALDLPAKD----------FTGTS 267
Query: 173 DPYVVMEL 180
DPYV + L
Sbjct: 268 DPYVKIYL 275
>sp|Q8K4Q6|NEIL1_MOUSE Endonuclease 8-like 1 OS=Mus musculus GN=Neil1 PE=2 SV=3
Length = 389
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 13 SMVHIAMLARATPSHSTVSPLSVSQLPQKPFSGKVELVF 51
S HI+ LAR T+SPL SQ PQKP S LVF
Sbjct: 43 SAYHISALARGKELRLTLSPLPGSQPPQKPLS----LVF 77
>sp|Q9UT00|YKH3_SCHPO Uncharacterized protein PYUK71.03c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAPYUK71.03c PE=1 SV=1
Length = 1225
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 12/51 (23%)
Query: 137 EMYD--GQLFIKLEKCFNLPAMDPWITHACSTGFLGTSDPYVVMELDGQEI 185
EMY+ G++ + + K +LPA D G SDP+VV EL G+E+
Sbjct: 1031 EMYENMGEMTVDVIKATDLPAADSN----------GKSDPFVVFELQGEEV 1071
>sp|Q86SS6|SYT9_HUMAN Synaptotagmin-9 OS=Homo sapiens GN=SYT9 PE=2 SV=1
Length = 491
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 10/39 (25%)
Query: 142 QLFIKLEKCFNLPAMDPWITHACSTGFLGTSDPYVVMEL 180
QL +K+ K NLPA D F GTSDPYV + L
Sbjct: 236 QLIVKIHKAVNLPAKD----------FSGTSDPYVKIYL 264
>sp|Q9R0N9|SYT9_MOUSE Synaptotagmin-9 OS=Mus musculus GN=Syt9 PE=1 SV=2
Length = 491
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 10/39 (25%)
Query: 142 QLFIKLEKCFNLPAMDPWITHACSTGFLGTSDPYVVMEL 180
QL +K+ K NLPA D F GTSDPYV + L
Sbjct: 236 QLIVKIHKAVNLPAKD----------FSGTSDPYVKIYL 264
>sp|Q925C0|SYT9_RAT Synaptotagmin-9 OS=Rattus norvegicus GN=Syt9 PE=2 SV=1
Length = 491
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 10/39 (25%)
Query: 142 QLFIKLEKCFNLPAMDPWITHACSTGFLGTSDPYVVMEL 180
QL +K+ K NLPA D F GTSDPYV + L
Sbjct: 236 QLIVKIHKAVNLPAKD----------FSGTSDPYVKIYL 264
>sp|Q9R0N8|SYT6_MOUSE Synaptotagmin-6 OS=Mus musculus GN=Syt6 PE=1 SV=2
Length = 511
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 16/93 (17%)
Query: 98 VILAGFAFEAYTTPPESVGRKEVDVAGCKTVYLSE---SFAHEMYDGQLFIKLEKCFNLP 154
VIL FEA E+ K++ A ++V L E S + G+L + + KC NL
Sbjct: 332 VILDNL-FEASDLSRETSIWKDIQYATSESVDLGEIMFSLCYLPTAGRLTLTVIKCRNLK 390
Query: 155 AMDPWITHACSTGFLGTSDPYVVMEL--DGQEI 185
AMD G SDPYV + L DG+ +
Sbjct: 391 AMD----------ITGYSDPYVKVSLLCDGRRL 413
>sp|Q62746|SYT6_RAT Synaptotagmin-6 OS=Rattus norvegicus GN=Syt6 PE=2 SV=1
Length = 511
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 16/93 (17%)
Query: 98 VILAGFAFEAYTTPPESVGRKEVDVAGCKTVYLSE---SFAHEMYDGQLFIKLEKCFNLP 154
VIL FEA E+ K++ A ++V L E S + G+L + + KC NL
Sbjct: 332 VILDNL-FEASDLSRETSIWKDIQYATSESVDLGEIMFSLCYLPTAGRLTLTVIKCRNLK 390
Query: 155 AMDPWITHACSTGFLGTSDPYVVMEL--DGQEI 185
AMD G SDPYV + L DG+ +
Sbjct: 391 AMD----------ITGYSDPYVKVSLLCDGRRL 413
>sp|Q5T7P8|SYT6_HUMAN Synaptotagmin-6 OS=Homo sapiens GN=SYT6 PE=1 SV=3
Length = 510
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 16/93 (17%)
Query: 98 VILAGFAFEAYTTPPESVGRKEVDVAGCKTVYLSE---SFAHEMYDGQLFIKLEKCFNLP 154
VIL FEA E+ K++ A ++V L E S + G+L + + KC NL
Sbjct: 331 VILDNL-FEASDLSRETSIWKDIQYATSESVDLGEIMFSLCYLPTAGRLTLTVIKCRNLK 389
Query: 155 AMDPWITHACSTGFLGTSDPYVVMEL--DGQEI 185
AMD G SDPYV + L DG+ +
Sbjct: 390 AMD----------ITGYSDPYVKVSLLCDGRRL 412
>sp|A4G8X1|SYD_HERAR Aspartate--tRNA ligase OS=Herminiimonas arsenicoxydans GN=aspS PE=3
SV=1
Length = 599
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/59 (20%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 125 CKTVYLSESFAHEMYDGQLFIKLEKCFNLPAMDPW--ITHACSTGFLGTSDPYVVMELD 181
C+T +++E ++++G + + + C N+ +P+ + +A + G G+ P + ++L+
Sbjct: 235 CETSFMNEQEIRDLFEGMIRLVFKNCLNVELPNPFPVMDYATAMGMYGSDKPDMRVKLE 293
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,028,800
Number of Sequences: 539616
Number of extensions: 3114351
Number of successful extensions: 5746
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 5731
Number of HSP's gapped (non-prelim): 25
length of query: 195
length of database: 191,569,459
effective HSP length: 111
effective length of query: 84
effective length of database: 131,672,083
effective search space: 11060454972
effective search space used: 11060454972
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)