BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039196
(288 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 108/220 (49%), Gaps = 10/220 (4%)
Query: 54 RMVIAELVGTFILMLCVCGIMASTVLTRGEVGLLEYAATAGLTIIVLVYSIGPISGAHVN 113
R + AE T L G+ AS G + +L+ A GL + LV ++G ISGAHVN
Sbjct: 11 RAIFAEFFAT--LFYVFFGLGASLRWAPGPLHVLQVALAFGLALATLVQAVGHISGAHVN 68
Query: 114 PAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYI--GILVYGIKSNLMIT--RPAQHCV 169
PAVT AF V L + Y++AQ G+V G + + ++ NL + P
Sbjct: 69 PAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVG 128
Query: 170 SAFWVELLATSIIVFLAASLACEAQCFGNLS--GFVVGVAIGLAVLITGPVSGGSMNPAR 227
A VE+ T V + E + G L VG ++ L L +G MNPAR
Sbjct: 129 QATIVEIFLTLQFVLCIFATYDERRN-GRLGSVALAVGFSLTLGHLFGMYYTGAGMNPAR 187
Query: 228 SLGPAIVSWNFSDIWIYIIGPTIGAVAGGFVYRFLRLRPR 267
S PAI++ NF++ W+Y +GP IGA G +Y FL L PR
Sbjct: 188 SFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFL-LFPR 226
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 108/220 (49%), Gaps = 10/220 (4%)
Query: 54 RMVIAELVGTFILMLCVCGIMASTVLTRGEVGLLEYAATAGLTIIVLVYSIGPISGAHVN 113
R + AE T L G+ AS G + +L+ A GL + LV ++G ISGAHVN
Sbjct: 7 RAIFAEFFAT--LFYVFFGLGASLRWAPGPLHVLQVALAFGLALATLVQAVGHISGAHVN 64
Query: 114 PAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVY--GIKSNLMIT--RPAQHCV 169
PAVT AF V L + Y++AQ G+V G + V ++ NL + P
Sbjct: 65 PAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVG 124
Query: 170 SAFWVELLATSIIVFLAASLACEAQCFGNLS--GFVVGVAIGLAVLITGPVSGGSMNPAR 227
A VE+ T V + E + G L VG ++ L L +G MNPAR
Sbjct: 125 QATIVEIFLTLQFVLCIFATYDERRN-GRLGSVALAVGFSLTLGHLFGMYYTGAGMNPAR 183
Query: 228 SLGPAIVSWNFSDIWIYIIGPTIGAVAGGFVYRFLRLRPR 267
S PAI++ NF++ W+Y +GP IGA G +Y FL L PR
Sbjct: 184 SFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFL-LFPR 222
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 108/220 (49%), Gaps = 10/220 (4%)
Query: 54 RMVIAELVGTFILMLCVCGIMASTVLTRGEVGLLEYAATAGLTIIVLVYSIGPISGAHVN 113
R + AE T L G+ AS G + +L+ A GL + LV ++G ISGAHVN
Sbjct: 5 RAIFAEFFAT--LFYVFFGLGASLRWAPGPLHVLQVALAFGLALATLVQAVGHISGAHVN 62
Query: 114 PAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVY--GIKSNLMIT--RPAQHCV 169
PAVT AF V L + Y++AQ G+V G + V ++ NL + P
Sbjct: 63 PAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVG 122
Query: 170 SAFWVELLATSIIVFLAASLACEAQCFGNLS--GFVVGVAIGLAVLITGPVSGGSMNPAR 227
A VE+ T V + E + G L VG ++ L L +G MNPAR
Sbjct: 123 QATIVEIFLTLQFVLCIFATYDERRN-GRLGSVALAVGFSLTLGHLFGMYYTGAGMNPAR 181
Query: 228 SLGPAIVSWNFSDIWIYIIGPTIGAVAGGFVYRFLRLRPR 267
S PAI++ NF++ W+Y +GP IGA G +Y FL L PR
Sbjct: 182 SFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFL-LFPR 220
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 108/220 (49%), Gaps = 10/220 (4%)
Query: 54 RMVIAELVGTFILMLCVCGIMASTVLTRGEVGLLEYAATAGLTIIVLVYSIGPISGAHVN 113
R + AE + L G+ AS G + +L+ A GL + LV ++G ISGAHVN
Sbjct: 11 RAICAEFFAS--LFYVFFGLGASLRWAPGPLHVLQVALAFGLALATLVQAVGHISGAHVN 68
Query: 114 PAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYI--GILVYGIKSNLMIT--RPAQHCV 169
PAVT AF V L + Y++AQ G+V G + + ++ NL + P
Sbjct: 69 PAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVG 128
Query: 170 SAFWVELLATSIIVFLAASLACEAQCFGNLS--GFVVGVAIGLAVLITGPVSGGSMNPAR 227
A VE+ T V + E + G L VG ++ L L +G MNPAR
Sbjct: 129 QATIVEIFLTLQFVLCIFATYDERRN-GRLGSVALAVGFSLTLGHLFGMYYTGAGMNPAR 187
Query: 228 SLGPAIVSWNFSDIWIYIIGPTIGAVAGGFVYRFLRLRPR 267
S PAI++ NF++ W+Y +GP IGA G +Y FL L PR
Sbjct: 188 SFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFL-LFPR 226
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 94/175 (53%), Gaps = 7/175 (4%)
Query: 94 GLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVY 153
GL+I +V G ISG H+NPAVT+A ++K FYI AQ G+++G I LV
Sbjct: 56 GLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVT 115
Query: 154 --GIKSNLMITRPAQHCVSA--FWVELLATSIIVF--LAASLACEAQCFGNLSGFVVGVA 207
+ L +T + + VEL+ T +VF A+ + G+++ +G +
Sbjct: 116 PPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSVA-LAIGFS 174
Query: 208 IGLAVLITGPVSGGSMNPARSLGPAIVSWNFSDIWIYIIGPTIGAVAGGFVYRFL 262
+ + L +G SMNPARS GPA++ N+ + WIY +GP IGAV G +Y ++
Sbjct: 175 VAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYV 229
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 116/240 (48%), Gaps = 33/240 (13%)
Query: 54 RMVIAELVGTFILMLCVCGIMASTVLTRG--------------EVGLLEYAATA---GLT 96
+ IAE +GTFIL+ G A T++ GL ++ A G
Sbjct: 6 KRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGFA 65
Query: 97 IIVLVYSIGPISGAHVNPAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVYGIK 156
I +Y++G ISG H+NPAVTI V FP +V YI+AQ G+ G++I + GI
Sbjct: 66 IAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIG 125
Query: 157 S----NLMITRPAQHCVSAFWVELLATSIIVFLA----ASLACEAQCFGNLSGFVVGVAI 208
+ L T P ++W +LA + FL +A + + +G ++G+ +
Sbjct: 126 AATVGGLGATAPFPGI--SYWQAMLAEVVGTFLLMITIMGIAVDERAPKGFAGIIIGLTV 183
Query: 209 GLAVLITGPVSGGSMNPARSLGPAIVSWNF--SDIW----IYIIGPTIGAVAGGFVYRFL 262
+ G +SG S+NPAR+ GP + F +D+W IY+IGP +GAV Y++L
Sbjct: 184 AGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQYL 243
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 93/175 (53%), Gaps = 7/175 (4%)
Query: 94 GLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVY 153
GL+I +V G ISG H+NPAVT+A ++K FYI AQ G+++G I LV
Sbjct: 95 GLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVT 154
Query: 154 --GIKSNLMITRPAQHCVSA--FWVELLATSIIVF--LAASLACEAQCFGNLSGFVVGVA 207
+ L +T + + VEL+ T +VF A+ G+++ +G +
Sbjct: 155 PPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVA-LAIGFS 213
Query: 208 IGLAVLITGPVSGGSMNPARSLGPAIVSWNFSDIWIYIIGPTIGAVAGGFVYRFL 262
+ + L +G SMNPARS GPA++ N+ + WIY +GP IGAV G +Y ++
Sbjct: 214 VAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYV 268
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 117/253 (46%), Gaps = 43/253 (16%)
Query: 57 IAELVGTFILMLCVCGIMASTVLTRGEVGLLEYAATAGLTIIVLVYSIGPISGAHVNPAV 116
IAE +GT +L+ G +A+ + G E + GL + + +Y +SGAH+NPAV
Sbjct: 12 IAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIFGLGVAMAIYLTAGVSGAHLNPAV 71
Query: 117 TIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVYGIKSNLMI--------------- 161
TIA + F KV +I++Q AG+ LVYG+ NL
Sbjct: 72 TIALWLFACFDKRKVIPFIVSQVAGAFCAA---ALVYGLYYNLFFDFEQTHHIVRGSVES 128
Query: 162 --------TRPAQHC--VSAFWVELLATSIIVFLAASLACEAQCF--GNLSGFVVGVAIG 209
T P H V AF VE++ T+I++ L +L + G L+ ++G+ I
Sbjct: 129 VDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIGLLIA 188
Query: 210 LAVLITGPVSGGSMNPARSLGPAIVSW----------NFSDIWIYII---GPTIGAVAGG 256
+ GP++G +MNPAR GP + +W DI +++ GP +GA+ G
Sbjct: 189 VIGASMGPLTGTAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGA 248
Query: 257 FVYRFLRLRPRAC 269
F YR L R C
Sbjct: 249 FAYRKLIGRHLPC 261
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 93/175 (53%), Gaps = 7/175 (4%)
Query: 94 GLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVY 153
GL+I +V G ISG H+NPAVT+A ++K FYI AQ G+++G I LV
Sbjct: 56 GLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVT 115
Query: 154 --GIKSNLMITRPAQHCVSA--FWVELLATSIIVF--LAASLACEAQCFGNLSGFVVGVA 207
+ L +T + + VEL+ T +VF A+ G+++ +G +
Sbjct: 116 PPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVA-LAIGFS 174
Query: 208 IGLAVLITGPVSGGSMNPARSLGPAIVSWNFSDIWIYIIGPTIGAVAGGFVYRFL 262
+ + L +G SMNPARS GPA++ N+ + WIY +GP IGAV G +Y ++
Sbjct: 175 VAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYV 229
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 115/240 (47%), Gaps = 32/240 (13%)
Query: 53 ARMVIAELVGTFILMLCVCGIMASTVL-TRGEVGLLEYAATA----------------GL 95
A+ AE+VGTFIL+ G T++ G E+ L
Sbjct: 6 AKRFTAEVVGTFILVFFGPGAAVITLMIANGADKPNEFNIGIGALGGLGDWFAIGMAFAL 65
Query: 96 TIIVLVYSIGPISGAHVNPAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVYGI 155
I ++YS+G ISGAH+NPAVTIA +G FP +V YI+AQ G+ LG+ + + G
Sbjct: 66 AIAAVIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLLFLACVGP 125
Query: 156 KSNLM------ITRPAQHCVSAFWVELLATSIIVFLAASLACEAQCFGNLSGFVVGVAIG 209
+ + P A E + T +++ + +A + + +G V+G+ +G
Sbjct: 126 AAATVGGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERAPPGFAGLVIGLTVG 185
Query: 210 LAVLITGPVSGGSMNPARSLGP-------AIVSWNFSDIWIYIIGPTIGAVAGGFVYRFL 262
+ G ++G S+NPAR+ GP I W + IY+IGP +GAVA ++Y +L
Sbjct: 186 GIITTIGNITGSSLNPARTFGPYLGDSLMGINLWQYFP--IYVIGPIVGAVAAAWLYNYL 243
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 117/253 (46%), Gaps = 43/253 (16%)
Query: 57 IAELVGTFILMLCVCGIMASTVLTRGEVGLLEYAATAGLTIIVLVYSIGPISGAHVNPAV 116
IAE +GT +L+ G +A+ + G E + GL + + +Y +SGAH+NPAV
Sbjct: 12 IAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAV 71
Query: 117 TIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVYGIKSNLMI--------------- 161
TIA + F KV +I++Q AG+ LVYG+ NL
Sbjct: 72 TIALWLFACFDKRKVIPFIVSQVAGAFCAA---ALVYGLYYNLFFDFEQTHHIVRGSVES 128
Query: 162 --------TRPAQHC--VSAFWVELLATSIIVFLAASLACEAQCF--GNLSGFVVGVAIG 209
T P H V AF VE++ T+I++ L +L + G L+ ++G+ I
Sbjct: 129 VDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIGLLIA 188
Query: 210 LAVLITGPVSGGSMNPARSLGPAIVSW----------NFSDIWIYII---GPTIGAVAGG 256
+ GP++G +MNPAR GP + +W DI +++ GP +GA+ G
Sbjct: 189 VIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGA 248
Query: 257 FVYRFLRLRPRAC 269
F YR L R C
Sbjct: 249 FAYRKLIGRHLPC 261
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 94/175 (53%), Gaps = 7/175 (4%)
Query: 94 GLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVY 153
GL+I +V G ISG H+NPAVT+A ++K FYI AQ G+++G I LV
Sbjct: 47 GLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVT 106
Query: 154 --GIKSNLMITRPAQHCVSA--FWVELLATSIIVF--LAASLACEAQCFGNLSGFVVGVA 207
+ L +T + + VEL+ T +VF A+ + G+++ +G +
Sbjct: 107 PPSVVGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGFS 165
Query: 208 IGLAVLITGPVSGGSMNPARSLGPAIVSWNFSDIWIYIIGPTIGAVAGGFVYRFL 262
+ + L +G SMNPARS GPA++ N+ + WIY +GP IGAV G +Y ++
Sbjct: 166 VAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYV 220
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 99/183 (54%), Gaps = 12/183 (6%)
Query: 94 GLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVY 153
GL+I L S+G ISGAH+NPAVT+ + + + YI+AQ G+++ T I +
Sbjct: 57 GLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAI---LS 113
Query: 154 GIKSNLMITRPAQHCVS-------AFWVELLAT-SIIVFLAASLACEAQCFGNLSGFVVG 205
GI S+L ++ ++ +E++ T +++ + A+ + G + +G
Sbjct: 114 GITSSLTGNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSAPLAIG 173
Query: 206 VAIGLAVLITGPVSGGSMNPARSLGPAIVSWNFSDIWIYIIGPTIGAVAGGFVYRFLRLR 265
+++ L L+ +G +NPARS G A+++ NFS+ WI+ +GP IG +Y F+ L
Sbjct: 174 LSVALGHLLAIDYTGCGINPARSFGSAVITHNFSNHWIFWVGPFIGGALAVLIYDFI-LA 232
Query: 266 PRA 268
PR+
Sbjct: 233 PRS 235
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 84.3 bits (207), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 95/183 (51%), Gaps = 12/183 (6%)
Query: 94 GLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVY 153
GL+I L S+G ISGAH+NPAVT+ + + + YI+AQ G+++ T I +
Sbjct: 59 GLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAI---LS 115
Query: 154 GIKSNLMITR-------PAQHCVSAFWVELLAT-SIIVFLAASLACEAQCFGNLSGFVVG 205
GI S+L P + +E++ T +++ + A+ + G +G
Sbjct: 116 GITSSLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSGPLAIG 175
Query: 206 VAIGLAVLITGPVSGGSMNPARSLGPAIVSWNFSDIWIYIIGPTIGAVAGGFVYRFLRLR 265
++ L L+ +G +NPARS G ++++ NF D WI+ +GP IGA +Y F+ L
Sbjct: 176 FSVALGHLLAIDYTGCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFI-LA 234
Query: 266 PRA 268
PR+
Sbjct: 235 PRS 237
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 112/224 (50%), Gaps = 21/224 (9%)
Query: 54 RMVIAELVGTFILMLCVCG--IMASTVLTRGEVGLLEYAATAGLTIIVLVYSIGPISGAH 111
R ++AE GTF L+ CG + A+ G +G A GLT++ + Y++G ISG H
Sbjct: 31 RKLLAEFFGTFWLVFGGCGSAVFAAAFPELG-IGFTGVALAFGLTVLTMAYAVGGISGGH 89
Query: 112 VNPAVTIAFAVVGHFPLSK-VPFYIMAQTAGSVLGTYI--------GILVYGIKSNLMIT 162
NPAV++ V G FP S VP+ I V + GI + G SN
Sbjct: 90 FNPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNGYGE 149
Query: 163 R-PAQHC-VSAFWVELLATS--IIVFLAASLACEAQCFGNLSGFVVGVAIGLAVLITGPV 218
P + VSA +E++ T+ +IV L ++ F ++ +G+A+ L LI+ PV
Sbjct: 150 HSPGGYSLVSALLIEIILTAFFLIVILGSTHGRVPAGFAPIA---IGLALTLIHLISIPV 206
Query: 219 SGGSMNPARSLGPAIV--SWNFSDIWIYIIGPTIGAVAGGFVYR 260
+ S+NPARS G A+ W +W++ + P +G AG +++
Sbjct: 207 TNTSVNPARSTGQALFVGGWALQQLWLFWLAPIVGGAAGAVIWK 250
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 108/223 (48%), Gaps = 24/223 (10%)
Query: 54 RMVIAELVGTFILMLCVCGIMASTVLTRGEVGLLEYAATAGLTIIVLVYSIGPISGAHVN 113
+ V AE + T I + G+ ++ +L+ A GL I L ++GP+SG H+N
Sbjct: 13 KAVFAEFLATLIFVFF--GLGSALKWPSALPTILQIALAFGLAIGTLAQALGPVSGGHIN 70
Query: 114 PAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVYGIK-----------SNLMIT 162
PA+T+A V L + FY+ AQ G++ G GIL YG+ + T
Sbjct: 71 PAITLALLVGNQISLLRAFFYVAAQLVGAIAGA--GIL-YGVAPLNARGNLAVNALNNNT 127
Query: 163 RPAQHCVSAFWVELLATSIIVF--LAASLACEAQCFGNLSGFVVGVAIGLAVLITGPVSG 220
Q V VEL+ T + A++ + G+ +G+++ L L+ +G
Sbjct: 128 TQGQAMV----VELILTFQLALCIFASTDSRRTSPVGS-PALSIGLSVTLGHLVGIYFTG 182
Query: 221 GSMNPARSLGPAIVSWNFSDI-WIYIIGPTIGAVAGGFVYRFL 262
SMNPARS GPA+V FS W++ +GP +GAV +Y +L
Sbjct: 183 CSMNPARSFGPAVVMNRFSPAHWVFWVGPIVGAVLAAILYFYL 225
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 100/212 (47%), Gaps = 27/212 (12%)
Query: 54 RMVIAELVGTFILMLCVCGIMASTVLTRG----EVGLLEYAATAGLTIIVLVYSIGPISG 109
R + AE GTF L+ CG S VL G +G A GLT++ + +++G ISG
Sbjct: 3 RKLAAECFGTFWLVFGGCG---SAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISG 59
Query: 110 AHVNPAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVYGIK-------SNLMIT 162
H NPAVTI G FP +V Y++AQ G ++ + L+ K S
Sbjct: 60 GHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASN 119
Query: 163 RPAQHC------VSAFWVELLATS--IIVFLAASLACEAQCFGNLSGFVVGVAIGLAVLI 214
+H +SA VEL+ ++ ++V A+ F ++ +G+A+ L LI
Sbjct: 120 GYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIA---IGLALTLIHLI 176
Query: 215 TGPVSGGSMNPARSLGPAIVS--WNFSDIWIY 244
+ PV+ S+NPARS AI W +W +
Sbjct: 177 SIPVTNTSVNPARSTAVAIFQGGWALEQLWFF 208
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 100/212 (47%), Gaps = 27/212 (12%)
Query: 54 RMVIAELVGTFILMLCVCGIMASTVLTRG----EVGLLEYAATAGLTIIVLVYSIGPISG 109
R + AE GTF L+ CG S VL G +G A GLT++ + +++G ISG
Sbjct: 6 RKLAAECFGTFWLVFGGCG---SAVLAAGFPALGIGFAGVALAWGLTVLTMAFAVGHISG 62
Query: 110 AHVNPAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVYGIK-------SNLMIT 162
H NPAVTI G FP +V Y++AQ G ++ + L+ K S
Sbjct: 63 GHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASN 122
Query: 163 RPAQHC------VSAFWVELLATS--IIVFLAASLACEAQCFGNLSGFVVGVAIGLAVLI 214
+H +SA VEL+ ++ ++V A+ F ++ +G+A+ L LI
Sbjct: 123 GYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIA---IGLALTLIHLI 179
Query: 215 TGPVSGGSMNPARSLGPAIVS--WNFSDIWIY 244
+ PV+ S+NPARS AI W +W +
Sbjct: 180 SIPVTNTSVNPARSTAVAIFQGGWALEQLWFF 211
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 108/228 (47%), Gaps = 22/228 (9%)
Query: 54 RMVIAELVGT----FILMLCVCGIMASTVLTRGEVGLLEYAATAGLTIIVLVYSIGPISG 109
R IAE + T +I + V G TV+ G VGLL A G I VLVY ISG
Sbjct: 62 RAAIAEFIATLLFLYITVATVIGHSKETVVC-GSVGLLGIAWAFGGMIFVLVYCTAGISG 120
Query: 110 AHVNPAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVYGIKSNLMITRPAQHCV 169
H+NPAVT + L + Y++AQ G++ G +G++ +K + V
Sbjct: 121 GHINPAVTFGLFLARKVELLRALVYMIAQCLGAICG--VGLVKAFMKGPYNQFGGGANSV 178
Query: 170 -------SAFWVELLATSIIVFLAASLACEAQCFGN-----LSGFVVGVAIGLAVLITGP 217
+A E++ T ++V+ S + + L+ +G A+ + L T P
Sbjct: 179 ALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIP 238
Query: 218 VSGGSMNPARSLGPAIV---SWNFSDIWIYIIGPTIGAVAGGFVYRFL 262
++G +NPARS G A++ + + D WI+ +GP IGA ++++
Sbjct: 239 ITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYV 286
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 108/228 (47%), Gaps = 22/228 (9%)
Query: 54 RMVIAELVGT----FILMLCVCGIMASTVLTRGEVGLLEYAATAGLTIIVLVYSIGPISG 109
R IAE + T +I + V G TV+ G VGLL A G I VLVY ISG
Sbjct: 39 RAAIAEFIATLLFLYITVATVIGHSKETVVC-GSVGLLGIAWAFGGMIFVLVYCTAGISG 97
Query: 110 AHVNPAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVYGIKSNLMITRPAQHCV 169
H+NPAVT + L + Y++AQ G++ G +G++ +K + V
Sbjct: 98 GHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICG--VGLVKAFMKGPYNQFGGGANSV 155
Query: 170 -------SAFWVELLATSIIVFLAASLACEAQCFGN-----LSGFVVGVAIGLAVLITGP 217
+A E++ T ++V+ S + + L+ +G A+ + L T P
Sbjct: 156 ALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIP 215
Query: 218 VSGGSMNPARSLGPAIV---SWNFSDIWIYIIGPTIGAVAGGFVYRFL 262
++G +NPARS G A++ + + D WI+ +GP IGA ++++
Sbjct: 216 ITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYV 263
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 100/212 (47%), Gaps = 27/212 (12%)
Query: 54 RMVIAELVGTFILMLCVCGIMASTVLTRG----EVGLLEYAATAGLTIIVLVYSIGPISG 109
R + AE GTF L+ CG S VL G +G A GLT++ + +++G ISG
Sbjct: 6 RKLAAECFGTFWLVFGGCG---SAVLAAGFPELGIGFAGVALAWGLTVLTMAFAVGHISG 62
Query: 110 AHVNPAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVYGIK-------SNLMIT 162
H NPAVTI G FP +V Y++AQ G ++ + L+ K S
Sbjct: 63 GHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASN 122
Query: 163 RPAQHC------VSAFWVELLATS--IIVFLAASLACEAQCFGNLSGFVVGVAIGLAVLI 214
+H +SA VEL+ ++ ++V A+ F ++ +G+A+ L LI
Sbjct: 123 GYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIA---IGLALTLIGLI 179
Query: 215 TGPVSGGSMNPARSLGPAIVS--WNFSDIWIY 244
+ PV+ S+NPARS AI W +W +
Sbjct: 180 SIPVTNFSVNPARSTAVAIFQGGWALEQLWFF 211
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 100/212 (47%), Gaps = 27/212 (12%)
Query: 54 RMVIAELVGTFILMLCVCGIMASTVLTRG----EVGLLEYAATAGLTIIVLVYSIGPISG 109
R + AE GTF L+ CG S VL G +G A GLT++ + +++G ISG
Sbjct: 6 RKLAAECFGTFWLVFGGCG---SAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISG 62
Query: 110 AHVNPAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVYGIK-------SNLMIT 162
H NPAVTI G FP +V Y++AQ G ++ + L+ K S
Sbjct: 63 GHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASN 122
Query: 163 RPAQHC------VSAFWVELLATS--IIVFLAASLACEAQCFGNLSGFVVGVAIGLAVLI 214
+H +SA VEL+ ++ ++V A+ F ++ +G+A+ L LI
Sbjct: 123 GYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIA---IGLALTLIGLI 179
Query: 215 TGPVSGGSMNPARSLGPAIVS--WNFSDIWIY 244
+ PV+ S+NPARS AI W +W +
Sbjct: 180 SIPVTNFSVNPARSTAVAIFQGGWALEQLWFF 211
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 108/228 (47%), Gaps = 22/228 (9%)
Query: 54 RMVIAELVGT----FILMLCVCGIMASTVLTRGEVGLLEYAATAGLTIIVLVYSIGPISG 109
R IAE + T +I + V G TV+ G VGLL A G I VLVY ISG
Sbjct: 62 RAAIAEFIATLLFLYITVATVIGHSKETVVC-GSVGLLGIAWAFGGMIFVLVYCTAGISG 120
Query: 110 AHVNPAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVYGIKSNLMITRPAQHCV 169
H+NPAVT + L + Y++AQ G++ G +G++ +K + V
Sbjct: 121 GHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICG--VGLVKAFMKGPYNQFGGGANSV 178
Query: 170 -------SAFWVELLATSIIVFLAASLACEAQCFGN-----LSGFVVGVAIGLAVLITGP 217
+A E++ T ++V+ S + + L+ +G A+ + L T P
Sbjct: 179 ALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIP 238
Query: 218 VSGGSMNPARSLGPAIV---SWNFSDIWIYIIGPTIGAVAGGFVYRFL 262
++G +NPARS G A++ + + D WI+ +GP IGA ++++
Sbjct: 239 ITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYV 286
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 108/228 (47%), Gaps = 22/228 (9%)
Query: 54 RMVIAELVGT----FILMLCVCGIMASTVLTRGEVGLLEYAATAGLTIIVLVYSIGPISG 109
R IAE + T +I + V G TV+ G VGLL A G I VLVY ISG
Sbjct: 58 RAAIAEFIATLLFLYITVATVIGHSKETVVC-GSVGLLGIAWAFGGMIFVLVYCTAGISG 116
Query: 110 AHVNPAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVYGIKSNLMITRPAQHCV 169
H+NPAVT + L + Y++AQ G++ G +G++ +K + V
Sbjct: 117 GHINPAVTFGLFLARKVELLRALVYMIAQCLGAICG--VGLVKAFMKGPYNQFGGGANSV 174
Query: 170 -------SAFWVELLATSIIVFLAASLACEAQCFGN-----LSGFVVGVAIGLAVLITGP 217
+A E++ T ++V+ S + + L+ +G A+ + L T P
Sbjct: 175 ALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIP 234
Query: 218 VSGGSMNPARSLGPAIV---SWNFSDIWIYIIGPTIGAVAGGFVYRFL 262
++G +NPARS G A++ + + D WI+ +GP IGA ++++
Sbjct: 235 ITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYV 282
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 108/230 (46%), Gaps = 26/230 (11%)
Query: 54 RMVIAELVGT----FILMLCVCGIMASTVLTRGEVGLLEYAATAGLTIIVLVYSIGPISG 109
R IAE + T +I + V G TV+ G VGLL A G I VLVY ISG
Sbjct: 39 RAAIAEFIATLLFLYITVATVIGHSKETVVC-GSVGLLGIAWAFGGMIFVLVYCTAGISG 97
Query: 110 AHVNPAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVYGIKSNLMITRPAQHCV 169
H+NPAVT + L + Y++AQ G++ G +G++ +K + V
Sbjct: 98 GHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICG--VGLVKAFMKGPYNQFGGGANSV 155
Query: 170 -------SAFWVELLATSIIVFLAASLACEAQCFGN-----LSGFVVGVAIGLAVLITGP 217
+A E++ T ++V+ S + + L+ +G A+ + L T P
Sbjct: 156 ALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIP 215
Query: 218 VSGGSMNPARSLGPAIV-----SWNFSDIWIYIIGPTIGAVAGGFVYRFL 262
++G +NPARS G A++ W+ D WI+ +GP IGA ++++
Sbjct: 216 ITGTGINPARSFGAAVIFNSNKVWD--DQWIFWVGPFIGAAVAAAYHQYV 263
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 99/212 (46%), Gaps = 27/212 (12%)
Query: 54 RMVIAELVGTFILMLCVCGIMASTVLTRG----EVGLLEYAATAGLTIIVLVYSIGPISG 109
R + AE GTF L V G S VL G +G A GLT++ + +++G ISG
Sbjct: 6 RKLAAESFGTFWL---VFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISG 62
Query: 110 AHVNPAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVYGIK-------SNLMIT 162
H NPAVTI G FP +V Y++AQ G ++ + L+ K S
Sbjct: 63 GHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASN 122
Query: 163 RPAQHC------VSAFWVELLATS--IIVFLAASLACEAQCFGNLSGFVVGVAIGLAVLI 214
+H +SA VEL+ ++ ++V A+ F ++ +G+A+ L LI
Sbjct: 123 GYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIA---IGLALTLIHLI 179
Query: 215 TGPVSGGSMNPARSLGPAIVS--WNFSDIWIY 244
+ PV+ S+NPARS AI W +W +
Sbjct: 180 SIPVTNCSVNPARSTAVAIFQGGWALEQLWFF 211
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium
Falciparum
Length = 258
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 100/224 (44%), Gaps = 26/224 (11%)
Query: 54 RMVIAELVGTFILMLCVCGIMASTVLTRGEVGLLEYAATAGLTIIVLVYSIGPISGAHVN 113
R I E +GTF+LM G A+ T + GL + + +SGAH+N
Sbjct: 11 REFIGEFLGTFVLMFLGEGATANFHTTGLSGDWYKLCLGWGLAVFFGILVSAKLSGAHLN 70
Query: 114 PAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGT-YIGILVYGIKSNLMITR--------P 164
AV+I + + F L K+P Y AQ G+ +GT + L +G SN I + P
Sbjct: 71 LAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGLYHGFISNSKIPQFAWETSRNP 130
Query: 165 AQHCVSAFWVELLATSIIVFLAASLACEAQCFGNLSGFVVGVAIGLAVLITGPVSGGS-- 222
+ AF+ EL+ T I++ + + E C G + +GL +L G GG+
Sbjct: 131 SISLTGAFFNELILTGILLLVILVVVDENIC-GKFHILKLSSVVGLIILCIGITFGGNTG 189
Query: 223 --MNPARSLGPAIVSW-----------NFSDIWIYIIGPTIGAV 253
+NP+R LG +S NF W+ ++ P +G+V
Sbjct: 190 FALNPSRDLGSRFLSLIAYGKDTFTKDNFY-FWVPLVAPCVGSV 232
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 99/212 (46%), Gaps = 27/212 (12%)
Query: 54 RMVIAELVGTFILMLCVCGIMASTVLTRG----EVGLLEYAATAGLTIIVLVYSIGPISG 109
R + AE GTF L+ G S VL G +G A GLT++ + +++G ISG
Sbjct: 6 RKLAAESFGTFWLVFGGSG---SAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISG 62
Query: 110 AHVNPAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVYGIK-------SNLMIT 162
H NPAVTI G FP +V Y++AQ G ++ + L+ K S
Sbjct: 63 GHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASN 122
Query: 163 RPAQHC------VSAFWVELLATS--IIVFLAASLACEAQCFGNLSGFVVGVAIGLAVLI 214
+H +SA VEL+ ++ ++V A+ F ++ +G+A+ L LI
Sbjct: 123 GYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIA---IGLALTLIHLI 179
Query: 215 TGPVSGGSMNPARSLGPAIVS--WNFSDIWIY 244
+ PV+ S+NPARS AI W +W +
Sbjct: 180 SIPVTNCSVNPARSTAVAIFQGGWALEQLWFF 211
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 98/212 (46%), Gaps = 27/212 (12%)
Query: 54 RMVIAELVGTFILMLCVCGIMASTVLTRG----EVGLLEYAATAGLTIIVLVYSIGPISG 109
R + AE GTF L+ G S VL G +G A GLT++ + +++G ISG
Sbjct: 6 RKLAAESFGTFWLVFGGSG---SAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISG 62
Query: 110 AHVNPAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVYGIK-------SNLMIT 162
H NPAVTI G FP +V Y++AQ G ++ + L+ K S
Sbjct: 63 GHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASN 122
Query: 163 RPAQHC------VSAFWVELLATS--IIVFLAASLACEAQCFGNLSGFVVGVAIGLAVLI 214
+H +SA VEL+ ++ ++V A+ F ++ +G+A L LI
Sbjct: 123 GYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIA---IGLACTLIHLI 179
Query: 215 TGPVSGGSMNPARSLGPAIVS--WNFSDIWIY 244
+ PV+ S+NPARS AI W +W +
Sbjct: 180 SIPVTNTSVNPARSTAVAIFQGGWALEQLWFF 211
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 92/207 (44%), Gaps = 17/207 (8%)
Query: 59 ELVGTFILMLC--VCGIMASTVLTRGEVG-----LLEYAATAGLTIIVLVYSIGPISGAH 111
E VGTF+ + V +A+ + G L+ + G ++V V+ +SG +
Sbjct: 51 EFVGTFLFLWSAFVIAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGGN 110
Query: 112 VNPAVTIAFAVVGHFPLSKVPFY--IMAQTAGSVLGTYIGILVYGIKSNLMITRPAQHCV 169
+NPAVT+A + P PF +MA T G +
Sbjct: 111 LNPAVTLALVLARAIP----PFRGILMAFTQIVAGMAAAGAASAMTPGEIAFANALGGGA 166
Query: 170 S---AFWVELLATSIIVFLAASLACEAQCFGNLSGFVVGVAIGLAVLITGPVSGGSMNPA 226
S ++E T+I+ LA E + FV+G+A+ +A LI +G +NPA
Sbjct: 167 SRTRGLFLEAFGTAILCLTVLMLAVEKHRATWFAPFVIGIALLIAHLICIYYTGAGLNPA 226
Query: 227 RSLGPAIVSWNFSDI-WIYIIGPTIGA 252
RS GPA+ + +F + WIY +GP +GA
Sbjct: 227 RSFGPAVAARSFPNYHWIYWLGPILGA 253
>pdb|3OZ9|H Chain H, Crystal Structure Of Anti-Gp41 Fab Nc-1
Length = 219
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 2/102 (1%)
Query: 27 PETGSNAMSIRNKGLLCIPHDIDLNPARMVIAELVGT-FILMLCVCGIMASTVLTRGEVG 85
P GS + + + KG D N A M ++ L + C G T G
Sbjct: 53 PGIGSTSYNEKFKGKATFTADTSSNTAYMQLSSLTSEDSAVYYCARGYYGPTWFAYWGQG 112
Query: 86 LLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFP 127
L ++A T VY + P+ G +VT+ V G+FP
Sbjct: 113 TLVTVSSAK-TTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFP 153
>pdb|1IL1|A Chain A, Crystal Structure Of G3-519, An Anti-Hiv Monoclonal
Antibody
Length = 219
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 10/108 (9%)
Query: 26 DPETGSNAMSIRNKGLLCIPHDIDLNPARMVIAELVGTFILMLCVCGIMASTVLTRGEVG 85
DPE G + + +G + D N A + ++ L + C +++T R
Sbjct: 50 DPENGDTESAPKFQGKATMTADTSSNTAYLQLSSLTSEASAVY-YCNAISTT---RDYYA 105
Query: 86 LLEYAATAGLTIIVL------VYSIGPISGAHVNPAVTIAFAVVGHFP 127
L + +T+ VY + P S A N VT+ V G+FP
Sbjct: 106 LDYWGQGTSVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFP 153
>pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose
Translocation Intermediate
Length = 802
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 7 KQSCSEISTCASTSGQSGDDPETGSNAMSIRNKGLLCIPHDIDLNPARMVIAELVGTFI 65
+Q C E+ ST ++ +A R KG L + D D P+R +A VG F+
Sbjct: 206 QQLCRELGVVYSTRERNEHAKAGNMSAALERLKGELVVVFDADHVPSRDFLARTVGYFV 264
>pdb|1AHW|B Chain B, A Complex Of Extracellular Domain Of Tissue Factor With An
Inhibitory Fab (5g9)
pdb|1AHW|E Chain E, A Complex Of Extracellular Domain Of Tissue Factor With An
Inhibitory Fab (5g9)
pdb|1FGN|H Chain H, Monoclonal Murine Antibody 5g9-Anti-Human Tissue Factor
Length = 214
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 39/102 (38%), Gaps = 2/102 (1%)
Query: 26 DPETGSNAMSIRNKGLLCIPHDIDLNPARMVIAELVGTFILMLCVCGIMASTVLTRGEVG 85
DPE G+ + +G I D N A + ++ L + C S G
Sbjct: 52 DPENGNTIYDPKFQGKASITADTSSNTAYLQLSSLTSEDTAVY-YCARDNSYYFDYWGQG 110
Query: 86 LLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFP 127
++A T VY + P S A N VT+ V G+FP
Sbjct: 111 TTLTVSSAK-TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFP 151
>pdb|1K6Q|H Chain H, Crystal Structure Of Antibody Fab Fragment D3
Length = 216
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 2/102 (1%)
Query: 26 DPETGSNAMSIRNKGLLCIPHDIDLNPARMVIAELVGTFILMLCVCGIMASTVLTRGEVG 85
DPE G+ + + I D N A + ++ L + A+ G+
Sbjct: 52 DPENGNTIYDPKFQDKASITADTSSNTAYLQLSSLTSEDTAVYYCARDTAAYFDYWGQGT 111
Query: 86 LLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFP 127
L ++ T VY + P S A N VT+ V G+FP
Sbjct: 112 TL--TVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFP 151
>pdb|2BDN|H Chain H, Crystal Structure Of Human Mcp-1 Bound To A Blocking
Antibody, 11k2
Length = 217
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 16/109 (14%)
Query: 26 DPETGSNAMSIRNKGLLCIPHDIDLNPARMVIAELVGTFILMLCVCGIMASTVLTRGEVG 85
DP G+ + +G I D N A + ++ L + C RG G
Sbjct: 52 DPANGNTKFDPKFQGKATITADTSSNTAYLQLSSLTSEDTAVY-YCA--------RGVFG 102
Query: 86 LLEY-------AATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFP 127
+Y ++ T VY + P+ G +VT+ V G+FP
Sbjct: 103 FFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFP 151
>pdb|4AMK|H Chain H, Fab Fragment Of Antiporphrin Antibody 13g10
Length = 217
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 42/109 (38%), Gaps = 18/109 (16%)
Query: 27 PETGSNAMSIRNKGLLCIPHDIDLNPARMVIAELVGT-FILMLCVCGIMASTVLTRGEVG 85
P G + S + KG + D + A M ++ L + C +RG G
Sbjct: 53 PGNGDTSYSQKFKGKATLTADKSSSTAYMQLSSLTSEDSAVYYC----------SRGGAG 102
Query: 86 LLEY-------AATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFP 127
++ Y ++ T VY + P S A N VT+ V G+FP
Sbjct: 103 IMAYWGQGTSVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFP 151
>pdb|1NLD|H Chain H, Fab Fragment Of A Neutralizing Antibody Directed Against
An Epitope Of Gp41 From Hiv-1
Length = 215
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 101 VYSIGPISGAHVNPAVTIAFAVVGHFP 127
VY + P+SG N +VT+ V G+FP
Sbjct: 121 VYPLAPVSGDQTNSSVTLGCLVKGYFP 147
>pdb|3DIF|B Chain B, Crystal Structure Of Fabox117
pdb|3DIF|D Chain D, Crystal Structure Of Fabox117
Length = 229
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 2/102 (1%)
Query: 27 PETGSNAMSIRNKGLLCIPHDIDLNPARMVIAELVGT-FILMLCVCGIMASTVLTRGEVG 85
P +G+ + + KG + D + A M ++ L + C G G
Sbjct: 53 PGSGNTKYNEKFKGKATLTADTSSSTAYMQLSSLTSEDSAVYFCARGNYDRAWFAYWGQG 112
Query: 86 LLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFP 127
L +A T VY + P S A N VT+ V G+FP
Sbjct: 113 TL-VTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFP 153
>pdb|1CR9|H Chain H, Crystal Structure Of The Anti-Prion Fab 3f4
pdb|1CU4|H Chain H, Crystal Structure Of The Anti-Prion Fab 3f4 In Complex
With Its Peptide Epitope
Length = 217
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 5/102 (4%)
Query: 26 DPETGSNAMSIRNKGLLCIPHDIDLNPARMVIAELVGTFILMLCVCGIMASTVLTRGEVG 85
DPE G++ + R +G + D N A + ++ L + C +G
Sbjct: 52 DPENGNSEYAPRFQGKATMTADTLSNTAYLQLSSLTSEDTAVY-YCNADLHDYWGQGTTL 110
Query: 86 LLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFP 127
+ A T + VY + P+ G +VT+ V G+FP
Sbjct: 111 TVSSAKTTAPS----VYPLAPVCGDTTGSSVTLGCLVKGYFP 148
>pdb|1EMT|H Chain H, Fab Antibody Fragment Of An C60 Antifullerene Antibody
Length = 213
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 8/102 (7%)
Query: 27 PETGSNAMSIRNKGLLCIPHDIDLNPARMVIAELVG-TFILMLCVCGIMASTVLTRGEVG 85
P G+ + + KG + D N A M ++ L + C A++ G+
Sbjct: 53 PGNGNTNYNEKFKGKATLTADKSSNTAYMQLSSLTSVDSAVYFC-----ATSSAYWGQGT 107
Query: 86 LLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFP 127
LL +A T VY + P S A N VT+ V G+FP
Sbjct: 108 LL--TVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFP 147
>pdb|1YEE|H Chain H, Structure Of A Catalytic Antibody, Igg2a Fab Fragment
(D2.5)
Length = 222
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 6/106 (5%)
Query: 27 PETGSNAMSIRNKGLLCIPHDIDLNPARMVIAELVGT-----FILMLCVCGIMASTVLTR 81
P TGS+ +++ KG + D + A M ++ L F + + VL
Sbjct: 53 PGTGSSYYNVKFKGKATLTADKSSSTAYMQLSSLKSDDSAVYFCVRWGFIPVREDYVLDY 112
Query: 82 GEVGLLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFP 127
G L ++A T VY + P+ G +VT+ V G+FP
Sbjct: 113 WGQGTLVTVSSAK-TTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFP 157
>pdb|2Z91|A Chain A, Crystal Structure Of The Fab Fragment Of Anti-Ciguatoxin
Antibody 10c9
pdb|2Z91|C Chain C, Crystal Structure Of The Fab Fragment Of Anti-Ciguatoxin
Antibody 10c9
pdb|2Z92|A Chain A, Crystal Structure Of The Fab Fragment Of Anti-Ciguatoxin
Antibody 10c9 In Complex With Ctx3c_abcde
pdb|2Z93|A Chain A, Crystal Structure Of Fab Fragment Of Anti-Ciguatoxin
Antibody 10c9 In Complex With Ctx3c-Abcd
pdb|2Z93|C Chain C, Crystal Structure Of Fab Fragment Of Anti-Ciguatoxin
Antibody 10c9 In Complex With Ctx3c-Abcd
Length = 218
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 56 VIAELVGTFILMLCVCGIMASTVLTRGEVGLLEYAATAGLTIIVLVYSIGPISGAHVNPA 115
V E T+ C C S +G + + A T + VY + P S A N
Sbjct: 84 VTTEDTATY---YCACDDFYSDYWGQGTIVTVSSAKTTPPS----VYPLAPGSAAQTNSM 136
Query: 116 VTIAFAVVGHFP 127
VT+ V G+FP
Sbjct: 137 VTLGCLVKGYFP 148
>pdb|4AT6|A Chain A, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|C Chain C, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|E Chain E, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|G Chain G, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|H Chain H, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|J Chain J, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|M Chain M, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|O Chain O, Fab Fragment Of Antiporphyrin Antibody 14h7
Length = 217
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 81 RGEVGLLEY-------AATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFP 127
RG GLL Y ++ T VY + P S A N VT+ V G+FP
Sbjct: 98 RGGSGLLAYWGQGTLVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFP 151
>pdb|1GHF|H Chain H, Anti-Anti-Idiotype Gh1002 Fab Fragment
Length = 212
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 74 MASTVLTRGEVGLLEYAATAGLTIIVL------VYSIGPISGAHVNPAVTIAFAVVGHFP 127
MA+ R E G +A LT+ VY + P S A N VT+ V G+FP
Sbjct: 89 MATYFCARVEAGFDYWAQGTTLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFP 148
>pdb|3RKD|H Chain H, Hepatitis E Virus E2s Domain (Genotype I) In Complex With
A Neutralizing Antibody
pdb|3RKD|D Chain D, Hepatitis E Virus E2s Domain (Genotype I) In Complex With
A Neutralizing Antibody
Length = 230
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 45/109 (41%), Gaps = 12/109 (11%)
Query: 25 DDPETGSNAMSIRNKGLLCIPHDIDLNPARMVIAELVGTFILMLCVCGIMASTVLTRGEV 84
DD + S A+ R L I D + + IA V T C + S V+T G+
Sbjct: 56 DDVKRYSPALKSR----LTISKDTSSSQLFLKIAS-VDTADTATYYCARIKS-VITTGDY 109
Query: 85 GLLEY------AATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFP 127
L + A ++ T VY + P S A N VT+ V G+FP
Sbjct: 110 ALDYWGQGTSVAVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFP 158
>pdb|2R4R|H Chain H, Crystal Structure Of The Human Beta2 Adrenoceptor
pdb|2R4S|H Chain H, Crystal Structure Of The Human Beta2 Adrenoceptor
pdb|3KJ6|H Chain H, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 217
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 101 VYSIGPISGAHVNPAVTIAFAVVGHFP 127
VY + P S A N AVT+ V G+FP
Sbjct: 121 VYPLAPGSAAQTNSAVTLGCLVKGYFP 147
>pdb|1XGY|H Chain H, Crystal Structure Of Anti-Meta I Rhodopsin Fab Fragment
K42- 41l
pdb|1XGY|I Chain I, Crystal Structure Of Anti-Meta I Rhodopsin Fab Fragment
K42- 41l
Length = 219
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 2/101 (1%)
Query: 27 PETGSNAMSIRNKGLLCIPHDIDLNPARMVIAELVGTFILMLCVCGIMASTVLTRGEVGL 86
P G+ + + KG + D + A M ++ L + C S V+ G
Sbjct: 53 PRNGNTKYNEKFKGKATLTVDKSSSTAFMQLSSLTSEDSAVY-FCATTVSYVMDYWGQGT 111
Query: 87 LEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFP 127
++A T VY + P S A N VT+ V G+FP
Sbjct: 112 TVTVSSAK-TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFP 151
>pdb|1JNL|H Chain H, Crystal Structure Of Fab-Estradiol Complexes
Length = 216
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 5/102 (4%)
Query: 26 DPETGSNAMSIRNKGLLCIPHDIDLNPARMVIAELVGTFILMLCVCGIMASTVLTRGEVG 85
+P G + R +G + D N A + + L + C I +G +
Sbjct: 52 NPANGISKYDPRFQGKATLTADTSSNTAYLQLDNLTSEDTAVY-YCAIEKDLPWGQGTLV 110
Query: 86 LLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFP 127
+ A T + VY + P S A N VT+ V G+FP
Sbjct: 111 TVSVAKTTPPS----VYPLAPGSAAQTNSMVTLGCLVKGYFP 148
>pdb|1JNN|H Chain H, Crystal Structure Of Fab-Estradiol Complexes
Length = 214
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 5/102 (4%)
Query: 26 DPETGSNAMSIRNKGLLCIPHDIDLNPARMVIAELVGTFILMLCVCGIMASTVLTRGEVG 85
+P G + R +G + D N A + + L + C I +G +
Sbjct: 52 NPANGISKYDPRFQGKATLTADTSSNTAYLQLDNLTSEDTAVY-YCAIEKDLPWGQGTLV 110
Query: 86 LLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFP 127
+ A T + VY + P S A N VT+ V G+FP
Sbjct: 111 TVSVAKTTPPS----VYPLAPGSAAQTNSMVTLGCLVKGYFP 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.140 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,704,460
Number of Sequences: 62578
Number of extensions: 290697
Number of successful extensions: 1202
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1050
Number of HSP's gapped (non-prelim): 82
length of query: 288
length of database: 14,973,337
effective HSP length: 98
effective length of query: 190
effective length of database: 8,840,693
effective search space: 1679731670
effective search space used: 1679731670
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)