Query 039196
Match_columns 288
No_of_seqs 202 out of 1567
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 07:14:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039196.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039196hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00184 aquaporin NIP1; Provi 100.0 3.2E-51 7E-56 370.4 24.4 227 47-273 48-282 (296)
2 KOG0223 Aquaporin (major intri 100.0 2.5E-51 5.3E-56 358.8 22.1 221 45-266 3-228 (238)
3 PLN00182 putative aquaporin NI 100.0 5.1E-49 1.1E-53 354.0 26.0 217 49-265 38-255 (283)
4 PLN00026 aquaporin NIP; Provi 100.0 7.4E-49 1.6E-53 354.3 24.6 221 49-269 67-287 (298)
5 PLN00183 putative aquaporin NI 100.0 2.6E-48 5.7E-53 348.2 23.5 243 37-279 29-271 (274)
6 COG0580 GlpF Glycerol uptake f 100.0 6.5E-47 1.4E-51 330.0 20.1 214 51-264 3-240 (241)
7 PTZ00016 aquaglyceroporin; Pro 100.0 6.2E-46 1.3E-50 336.8 24.3 217 50-266 47-292 (294)
8 PRK05420 aquaporin Z; Provisio 100.0 2.2E-45 4.8E-50 323.3 23.6 213 53-266 2-230 (231)
9 PLN00027 aquaporin TIP; Provis 100.0 2.1E-45 4.6E-50 327.3 22.7 220 50-269 17-244 (252)
10 KOG0224 Aquaporin (major intri 100.0 7.7E-47 1.7E-51 332.8 13.2 221 49-269 28-280 (316)
11 PLN00166 aquaporin TIP2; Provi 100.0 3E-45 6.6E-50 325.4 23.0 221 49-269 14-242 (250)
12 PF00230 MIP: Major intrinsic 100.0 5E-46 1.1E-50 327.6 16.5 213 47-259 2-227 (227)
13 PLN00167 aquaporin TIP5; Provi 100.0 1.5E-44 3.2E-49 321.8 24.8 222 48-269 17-245 (256)
14 cd00333 MIP Major intrinsic pr 100.0 4.1E-42 8.9E-47 302.9 19.7 209 54-262 1-228 (228)
15 TIGR00861 MIP MIP family chann 100.0 4.6E-40 9.9E-45 287.6 18.6 202 58-259 1-216 (216)
16 PLN00184 aquaporin NIP1; Provi 99.6 5E-16 1.1E-20 141.1 7.7 101 166-266 51-157 (296)
17 PLN00026 aquaporin NIP; Provi 99.6 5.5E-16 1.2E-20 140.6 7.3 100 166-265 68-173 (298)
18 PLN00182 putative aquaporin NI 99.6 6E-15 1.3E-19 133.3 10.7 99 51-155 157-255 (283)
19 cd00333 MIP Major intrinsic pr 99.6 1.3E-14 2.9E-19 127.8 10.3 100 49-151 126-227 (228)
20 PLN00183 putative aquaporin NI 99.6 4.3E-15 9.3E-20 133.7 7.1 105 161-265 34-147 (274)
21 PLN00167 aquaporin TIP5; Provi 99.5 1.4E-14 3E-19 129.4 8.8 100 166-265 19-129 (256)
22 PLN00166 aquaporin TIP2; Provi 99.5 1.5E-14 3.1E-19 129.0 7.7 100 166-265 15-125 (250)
23 PTZ00016 aquaglyceroporin; Pro 99.5 2.9E-14 6.3E-19 129.8 6.3 100 167-266 48-153 (294)
24 PRK05420 aquaporin Z; Provisio 99.5 5.4E-14 1.2E-18 124.0 7.4 97 169-265 2-105 (231)
25 PLN00027 aquaporin TIP; Provis 99.5 8.2E-14 1.8E-18 124.4 8.3 98 167-264 18-126 (252)
26 TIGR00861 MIP MIP family chann 99.5 1.4E-13 3E-18 120.4 9.3 96 50-148 119-215 (216)
27 KOG0224 Aquaporin (major intri 99.4 1.4E-13 3.1E-18 122.3 6.0 100 167-266 30-136 (316)
28 KOG0223 Aquaporin (major intri 99.4 2.5E-13 5.3E-18 119.5 6.3 102 48-156 127-228 (238)
29 COG0580 GlpF Glycerol uptake f 99.4 7.5E-13 1.6E-17 116.2 5.8 104 168-271 4-116 (241)
30 PF00230 MIP: Major intrinsic 99.1 5.5E-10 1.2E-14 98.3 10.7 97 49-149 131-227 (227)
31 COG2116 FocA Formate/nitrite f 95.1 0.14 3.1E-06 45.9 8.7 178 85-269 63-263 (265)
32 PRK11562 nitrite transporter N 94.0 1.4 3.1E-05 39.8 12.7 99 88-189 60-171 (268)
33 PRK10805 formate transporter; 90.1 13 0.00027 34.0 14.0 99 87-189 69-182 (285)
34 PRK09713 focB putative formate 89.5 10 0.00022 34.5 12.9 99 88-190 69-182 (282)
35 TIGR00790 fnt formate/nitrite 85.2 17 0.00037 32.2 11.5 98 89-189 46-158 (239)
36 PF04632 FUSC: Fusaric acid re 76.6 48 0.001 33.4 12.8 114 122-266 380-493 (650)
37 PF12811 BaxI_1: Bax inhibitor 70.4 85 0.0018 28.5 16.0 47 110-156 109-167 (274)
38 PF01226 Form_Nir_trans: Forma 60.5 1.1E+02 0.0024 27.2 10.2 101 87-190 58-172 (250)
39 PRK10631 p-hydroxybenzoic acid 49.3 3.1E+02 0.0068 28.2 12.6 124 110-265 381-504 (652)
40 PRK11427 multidrug efflux syst 46.8 3.5E+02 0.0076 28.0 12.3 28 128-155 395-422 (683)
41 PF10710 DUF2512: Protein of u 39.9 2E+02 0.0043 23.2 8.2 64 168-234 3-71 (136)
42 PF03033 Glyco_transf_28: Glyc 36.5 10 0.00023 29.6 -0.3 21 106-126 6-26 (139)
43 KOG3030 Lipid phosphate phosph 32.6 88 0.0019 29.0 5.1 47 220-266 210-265 (317)
44 PRK12446 undecaprenyldiphospho 29.6 12 0.00027 34.9 -1.1 22 103-124 6-27 (352)
45 PRK15049 L-asparagine permease 26.9 2.8E+02 0.0061 27.2 7.9 23 50-72 33-55 (499)
46 COG1289 Predicted membrane pro 25.6 6.6E+02 0.014 25.7 10.5 30 127-156 399-428 (674)
47 PF03169 OPT: OPT oligopeptide 23.9 7.6E+02 0.017 24.9 10.7 20 248-267 575-594 (624)
48 TIGR02908 CoxD_Bacillus cytoch 22.3 3.8E+02 0.0083 20.8 6.4 29 50-78 22-50 (110)
49 PF09512 ThiW: Thiamine-precur 21.1 3.7E+02 0.008 22.1 6.1 26 128-153 123-148 (150)
No 1
>PLN00184 aquaporin NIP1; Provisional
Probab=100.00 E-value=3.2e-51 Score=370.42 Aligned_cols=227 Identities=40% Similarity=0.698 Sum_probs=198.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHhcCC
Q 039196 47 DIDLNPARMVIAELVGTFILMLCVCGIMASTVLTRGEVGLLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHF 126 (288)
Q Consensus 47 ~~~~~~~r~~~~EfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~ 126 (288)
+++..++|++++||+|||+|+|++++++......+...++..++++||+++++.+++++++||||+|||||+++++.|++
T Consensus 48 ~~~~~~~~~~~aEfiGTflLvf~g~g~~~~~~~~~~~~~~~~iai~~Gl~v~~~i~~~g~iSGaH~NPAVTla~al~g~~ 127 (296)
T PLN00184 48 SVSVPFLQKLIAEVLGTYFLVFTGCASVVVNMQNDNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASCGRF 127 (296)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHhCCC
Confidence 45677899999999999999999998876543322234567889999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHhHHHHHHHHHHHHHhcCcC--------ceeeccCCcchhHHHHHHHHHHHHHHHHHhhcccccccCCC
Q 039196 127 PLSKVPFYIMAQTAGSVLGTYIGILVYGIKS--------NLMITRPAQHCVSAFWVELLATSIIVFLAASLACEAQCFGN 198 (288)
Q Consensus 127 ~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~--------~~~~~~p~~s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~~~~ 198 (288)
+|.++++|+++|++|+++|+++++.+++... ....+.|..+..++++.|+++|++|+++++.+..+++..+.
T Consensus 128 ~~~~~~~YiiaQllGA~lga~~~~~l~~~~~~~~~~~~~~~~~t~p~~s~~~af~~E~i~TfvLv~~il~~~~~~~~~~~ 207 (296)
T PLN00184 128 PLKQVPAYVISQVIGSTLAAATLRLLFGLDHDVCSGKHDVFIGSSPVGSDLQAFVMEFIVTFYLMFIISGVATDNRAIGE 207 (296)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhccccccceeeccCcCCcHHHHHHHHHHHHHHHHHHHHheeccCcCCCc
Confidence 9999999999999999999999999886431 12345566788999999999999999999988666655556
Q ss_pred hhhHHHHHHHHHHHHHhccCCCCccchhhhHHHHHhhcCCCceeeeeecchHHHHHHHHHHHHhhcCCCCCCCCC
Q 039196 199 LSGFVVGVAIGLAVLITGPVSGGSMNPARSLGPAIVSWNFSDIWIYIIGPTIGAVAGGFVYRFLRLRPRACSPST 273 (288)
Q Consensus 199 ~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~~g~al~~~~~~~~wvy~v~p~~Ga~la~~~~~~~~~~~~~~~~~~ 273 (288)
+.|+.||+++.+++++.+++||++|||||+|||+++...|.++||||+||++|+++|+++|+++...+.++.+.+
T Consensus 208 ~~~l~IG~~v~~~~~~~g~~TG~smNPAR~~GPal~~~~~~~~WVy~vgPilGa~laal~y~~l~~~~~~~~~~~ 282 (296)
T PLN00184 208 LAGLAIGSTVLLNVLIAAPVSSASMNPGRSLGPAMVYGCYKGIWIYIVAPTLGAIAGAWVYNTVRYTDKPLREIT 282 (296)
T ss_pred chHHHHHHHHHHHHHHhcccCccccCchhhHHHHHHhhcccccchHHhHHHHHHHHHHHHHHHHhcCCCcchhhc
Confidence 789999999999999999999999999999999999999999999999999999999999999998776654433
No 2
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.5e-51 Score=358.82 Aligned_cols=221 Identities=37% Similarity=0.613 Sum_probs=202.9
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHhc
Q 039196 45 PHDIDLNPARMVIAELVGTFILMLCVCGIMASTVLTRGEVGLLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVG 124 (288)
Q Consensus 45 ~~~~~~~~~r~~~~EfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g 124 (288)
.+..+++.+|++++||++|++++|+++++...........+.+.+++.+|+.+++.+++++++||||+|||||+++++.|
T Consensus 3 ~~~~~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a~~~~~ 82 (238)
T KOG0223|consen 3 GELLSVSFLRALIAEFLATFLFVFAGCGSVVVNPKYGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLAFAVGG 82 (238)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHHHHHhC
Confidence 34556889999999999999999999999887775455667889999999999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHhHHHHHHHHHHHHHhcCc---Ccee--eccCCcchhHHHHHHHHHHHHHHHHHhhcccccccCCCh
Q 039196 125 HFPLSKVPFYIMAQTAGSVLGTYIGILVYGIK---SNLM--ITRPAQHCVSAFWVELLATSIIVFLAASLACEAQCFGNL 199 (288)
Q Consensus 125 ~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~---~~~~--~~~p~~s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~~~~~ 199 (288)
++++.+++.|+++|++|+++|+.+.+.+.+.+ .... ...|..+..|+++.|++.||.|+++++....|++.. .+
T Consensus 83 ~isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~~~~-~~ 161 (238)
T KOG0223|consen 83 KISLFRAVAYIVAQLLGAIAGAALLKVVTPGQYNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATATDPRRS-EL 161 (238)
T ss_pred CCcHHHhHHHHHHHHHHHHHHHHHHheecCcccccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEeecCCCc-cc
Confidence 99999999999999999999999999999984 2222 344558999999999999999999999987888765 88
Q ss_pred hhHHHHHHHHHHHHHhccCCCCccchhhhHHHHHhhcCCCceeeeeecchHHHHHHHHHHHHhhcCC
Q 039196 200 SGFVVGVAIGLAVLITGPVSGGSMNPARSLGPAIVSWNFSDIWIYIIGPTIGAVAGGFVYRFLRLRP 266 (288)
Q Consensus 200 ~~~~ig~~v~~~~~~~~~~sG~~lNPA~~~g~al~~~~~~~~wvy~v~p~~Ga~la~~~~~~~~~~~ 266 (288)
+|+.||+++.+.+++++++||++|||||+|||+++.+.|++||+||+||++|+++++++|+.++.++
T Consensus 162 a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~~w~~hwiYwvgP~~Ga~~a~~~y~~v~~~~ 228 (238)
T KOG0223|consen 162 APLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYGSWDDHWIYWVGPLLGAILAALIYRLVFIPD 228 (238)
T ss_pred HHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhcCCCcEEEEEhhHHHHHHHHHHHHHHhccCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999877
No 3
>PLN00182 putative aquaporin NIP4; Provisional
Probab=100.00 E-value=5.1e-49 Score=354.02 Aligned_cols=217 Identities=40% Similarity=0.766 Sum_probs=192.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHhcCCCC
Q 039196 49 DLNPARMVIAELVGTFILMLCVCGIMASTVLTRGEVGLLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFPL 128 (288)
Q Consensus 49 ~~~~~r~~~~EfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~ 128 (288)
...++|++++||+|||+|+|++++++......++..+...+++++|+++++.+++++++||||+|||||+++++.|+++|
T Consensus 38 ~~~~~~~~~aEflgTflLvf~g~g~~~~~~~~~~~~~~~~iala~Gl~v~~~i~~~g~iSGah~NPAVTla~~~~~~~~~ 117 (283)
T PLN00182 38 IVCLTQKLIAEMIGTYFIIFSGCGVVVVNVLYGGTITFPGICVTWGLIVMVMIYSTGHISGAHFNPAVTVTFAIFRRFPW 117 (283)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHcCCCH
Confidence 45688999999999999999999987654332223356678899999999999999999999999999999999999999
Q ss_pred CchhHHHHHHhHHHHHHHHHHHHHhcCc-CceeeccCCcchhHHHHHHHHHHHHHHHHHhhcccccccCCChhhHHHHHH
Q 039196 129 SKVPFYIMAQTAGSVLGTYIGILVYGIK-SNLMITRPAQHCVSAFWVELLATSIIVFLAASLACEAQCFGNLSGFVVGVA 207 (288)
Q Consensus 129 ~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~-~~~~~~~p~~s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~~~~~~~~~ig~~ 207 (288)
.+++.|+++|++|+++|+++++.+++.. .....+.|..+..++++.|+++|++|+++++....+++..+...++.+|++
T Consensus 118 ~~~~~Yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~p~~s~~~a~~~E~l~TfiLv~~i~~~~~~~~~~~~~~~l~iGl~ 197 (283)
T PLN00182 118 YQVPLYIGAQLTGSLLASLTLRLMFNVTPEAFFGTTPTDSSGQALVAEIIISFLLMFVISGVATDSRAVGELAGIAVGMT 197 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccceeeCCCCcchHHHHHHHHHHHHHHHHHHHhheeccccCCcchhHHHHHH
Confidence 9999999999999999999999988643 334567787888999999999999999999887656554455689999999
Q ss_pred HHHHHHHhccCCCCccchhhhHHHHHhhcCCCceeeeeecchHHHHHHHHHHHHhhcC
Q 039196 208 IGLAVLITGPVSGGSMNPARSLGPAIVSWNFSDIWIYIIGPTIGAVAGGFVYRFLRLR 265 (288)
Q Consensus 208 v~~~~~~~~~~sG~~lNPA~~~g~al~~~~~~~~wvy~v~p~~Ga~la~~~~~~~~~~ 265 (288)
+.+.+++.+++||+++||||+|||+++.+.|.++|+||++|++|+++|+++|+++..+
T Consensus 198 V~~~~~~~g~~SGa~lNPARt~gpal~~~~~~~~wvY~vap~lGA~lgally~~l~~~ 255 (283)
T PLN00182 198 IILNVFVAGPISGASMNPARSLGPAIVMGRYKGIWVYIVGPFVGIIAGGFVYNLIRFT 255 (283)
T ss_pred HHHHHHHccccCccccChHHHHHHHHHhccccceeHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999998899999999999999999999999999753
No 4
>PLN00026 aquaporin NIP; Provisional
Probab=100.00 E-value=7.4e-49 Score=354.31 Aligned_cols=221 Identities=38% Similarity=0.642 Sum_probs=194.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHhcCCCC
Q 039196 49 DLNPARMVIAELVGTFILMLCVCGIMASTVLTRGEVGLLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFPL 128 (288)
Q Consensus 49 ~~~~~r~~~~EfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~ 128 (288)
+...+|++++||+|||+|+|++++............+++.+++++|+++++.+++++++||||+|||||+++++.++++|
T Consensus 67 ~~~~~r~~laEfiGTflLvf~g~~~~~~~~~~~~~~~~~~ial~~GlaV~~~i~~~g~ISGaHlNPAVTla~al~g~~~~ 146 (298)
T PLN00026 67 DVSLTRKLGAEFVGTFILIFAATAGPIVNQKYDGAETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAALRHFPW 146 (298)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhCCCcH
Confidence 45688999999999999999998765543322222356678899999999999999999999999999999999999999
Q ss_pred CchhHHHHHHhHHHHHHHHHHHHHhcCcCceeeccCCcchhHHHHHHHHHHHHHHHHHhhcccccccCCChhhHHHHHHH
Q 039196 129 SKVPFYIMAQTAGSVLGTYIGILVYGIKSNLMITRPAQHCVSAFWVELLATSIIVFLAASLACEAQCFGNLSGFVVGVAI 208 (288)
Q Consensus 129 ~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~p~~s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~~~~~~~~~ig~~v 208 (288)
.++++|+++|++|+++|+++++.++++......+.|..+..++++.|+++|++|+++++....|++..+...++.+|+++
T Consensus 147 ~~~~~YiiaQilGAi~aa~~~~~~~~~~~~~g~t~p~~s~~~a~~~Efi~TfiLv~vi~~v~~~~~~~~~~~~l~iGl~V 226 (298)
T PLN00026 147 KHVPAYIAAQVSASICASFALKGVFHPFMSGGVTVPSVSTGQAFALEFIITFNLLFVVTAVATDTRAVGELAGIAVGATV 226 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCceeeecccHHHHHHHHHHHHHHHHHhheeeecCCCCcCCccchHHHHHH
Confidence 99999999999999999999999987653334567888899999999999999999998776665544556889999999
Q ss_pred HHHHHHhccCCCCccchhhhHHHHHhhcCCCceeeeeecchHHHHHHHHHHHHhhcCCCCC
Q 039196 209 GLAVLITGPVSGGSMNPARSLGPAIVSWNFSDIWIYIIGPTIGAVAGGFVYRFLRLRPRAC 269 (288)
Q Consensus 209 ~~~~~~~~~~sG~~lNPA~~~g~al~~~~~~~~wvy~v~p~~Ga~la~~~~~~~~~~~~~~ 269 (288)
.+.+++.+++||+++||||+|||+++.++|.++|+||+||++|+++|+++|+.+..+++++
T Consensus 227 ~~~~l~~g~~TGa~mNPARtlgPal~~~~~~~~wVy~vaPilGAilga~ly~~~~~~~~~~ 287 (298)
T PLN00026 227 MLNILVAGPSTGGSMNPVRTLGPAVAAGNYRAIWIYLVAPTLGALAGAGTYTAVKLREEDG 287 (298)
T ss_pred HHHHHHhcccCccccChHHHHHHHHhcCCchheeHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 9999999999999999999999999999999999999999999999999999997655544
No 5
>PLN00183 putative aquaporin NIP7; Provisional
Probab=100.00 E-value=2.6e-48 Score=348.22 Aligned_cols=243 Identities=72% Similarity=1.228 Sum_probs=212.8
Q ss_pred ccccccccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHHHhhcccCCCCChHH
Q 039196 37 RNKGLLCIPHDIDLNPARMVIAELVGTFILMLCVCGIMASTVLTRGEVGLLEYAATAGLTIIVLVYSIGPISGAHVNPAV 116 (288)
Q Consensus 37 ~~~~~~~~~~~~~~~~~r~~~~EfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPav 116 (288)
+++-..+.|..++.+.+|.+++||++||+++|+++++........+..+...+++.+|+++++.+++++++||||+|||+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~laEfigTfllvf~~~g~~~~~~~~~~~~~~~~~al~~Gl~V~~~i~~~g~vSGah~NPAv 108 (274)
T PLN00183 29 RQRLFGCLPYDMDLNPARMVLAEMVGTFILMFCVCGIIASTQLSGGEVGLLEYAATAGLTVVVVVFSIGSISGAHVNPSV 108 (274)
T ss_pred hhhhccccCCcCChHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHH
Confidence 44445678889999999999999999999999999887654432223356678899999999999999999999999999
Q ss_pred HHHHHHhcCCCCCchhHHHHHHhHHHHHHHHHHHHHhcCcCceeeccCCcchhHHHHHHHHHHHHHHHHHhhcccccccC
Q 039196 117 TIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVYGIKSNLMITRPAQHCVSAFWVELLATSIIVFLAASLACEAQCF 196 (288)
Q Consensus 117 Tla~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~p~~s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~~ 196 (288)
|+++++.|+++|.++++|+++|++|+++|+.+.+.+++.......+.|..+..++++.|+++|++|+++++....+++..
T Consensus 109 Tla~~l~g~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~p~~~~~~~~~~E~v~T~iLv~~i~~~~~~~~~~ 188 (274)
T PLN00183 109 TIAFATFGHFPWSKVPLYITAQTVGSVLATYVGVSVYGVKADLMTTKPAQGCSSAFWVEFIATFIVMFLAASLTSQPQSL 188 (274)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcccHHHHHHHHHHHHHHHHHhhheeeccccCC
Confidence 99999999999999999999999999999999999988765556677777788999999999999999998876554444
Q ss_pred CChhhHHHHHHHHHHHHHhccCCCCccchhhhHHHHHhhcCCCceeeeeecchHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 039196 197 GNLSGFVVGVAIGLAVLITGPVSGGSMNPARSLGPAIVSWNFSDIWIYIIGPTIGAVAGGFVYRFLRLRPRACSPSTSPN 276 (288)
Q Consensus 197 ~~~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~~g~al~~~~~~~~wvy~v~p~~Ga~la~~~~~~~~~~~~~~~~~~~~~ 276 (288)
+...++.+|+++++.+++.+++||+++||||+|+|++++.+|.++|+||++|++|+++|+++|++++.+...+.+..+++
T Consensus 189 ~~~~~l~iGl~v~~~v~~~g~~TG~~~NPArtlgpai~~~~~~~~wvy~vapilGailaa~l~~~l~~~~~~~~~~~~~~ 268 (274)
T PLN00183 189 GHLSGFVIGIAIGLAVLITGPVSGGSMNPARSLGPAIVSWDFKDIWIYITAPTIGAVAGALMFHLLRLRTQPCSPNSSPN 268 (274)
T ss_pred CCceehHHHHHHHHHHHhccCCCCCEeCHHHHHHHHHhCCChhheehHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCc
Confidence 45678999999999999999999999999999999999989999999999999999999999999998887777766666
Q ss_pred Ccc
Q 039196 277 TSL 279 (288)
Q Consensus 277 ~~~ 279 (288)
...
T Consensus 269 ~~~ 271 (274)
T PLN00183 269 TSL 271 (274)
T ss_pred hhh
Confidence 543
No 6
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.5e-47 Score=330.04 Aligned_cols=214 Identities=36% Similarity=0.567 Sum_probs=190.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccccc---CCcchhHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHhcCCC
Q 039196 51 NPARMVIAELVGTFILMLCVCGIMASTVLTR---GEVGLLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFP 127 (288)
Q Consensus 51 ~~~r~~~~EfigT~~lvf~~~~~~~~~~~~~---~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~ 127 (288)
+..|++++||+||++|+++++++++...... ...++..++++||+++++.+|+++++||||+|||||+++++.|+++
T Consensus 3 ~~~~~~~aEflGT~~Li~~G~G~~a~~~l~~~~~~~~~~~~i~~~wGl~V~~~iy~~g~iSGaHlNPAVTi~la~~g~fp 82 (241)
T COG0580 3 TLTKKLLAEFLGTFLLIFFGNGSVAAVALKGSKALGGGWLGIALAWGLGVLVAIYAFGGISGAHLNPAVTIALAVRGRFP 82 (241)
T ss_pred cHHHHHHHHHHHHHHHHHhhccHHHHHHhccccccccceeehhHHHHHHHHHHHHhccCcCccccChHHHHHHHHhCCCC
Confidence 3578889999999999999999988877553 3456778999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHhHHHHHHHHHHHHHhcCcCc-----------eeeccCC-cchhHHHHHHHHHHHHHHHHHhhccccccc
Q 039196 128 LSKVPFYIMAQTAGSVLGTYIGILVYGIKSN-----------LMITRPA-QHCVSAFWVELLATSIIVFLAASLACEAQC 195 (288)
Q Consensus 128 ~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~-----------~~~~~p~-~s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~ 195 (288)
|++++.|+++|++|+++|+.+++.++++... .+++.|. .+..++++.|+++||+|++.++...++++.
T Consensus 83 ~~~v~~YivAQ~lGA~~ga~l~~~~~~~~~~~~~~~~~~~~g~~~t~p~~~~~~~~fl~E~v~T~~L~~~Ila~~~~~~~ 162 (241)
T COG0580 83 WRKVLPYIVAQVLGAFAGAALLYLLYYGKILETEGDPLASLGAFSTSPGGYSLGQAFLIEFVGTFVLVLGILALTDDGNA 162 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhcCCchhhccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhhccCcc
Confidence 9999999999999999999999999887621 2346776 578899999999999999999998766655
Q ss_pred CCChhhHHHHHHHHHHHHHhccCCCCccchhhhHHHHHhhc---------CCCceeeeeecchHHHHHHHHHHHHhhc
Q 039196 196 FGNLSGFVVGVAIGLAVLITGPVSGGSMNPARSLGPAIVSW---------NFSDIWIYIIGPTIGAVAGGFVYRFLRL 264 (288)
Q Consensus 196 ~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~~g~al~~~---------~~~~~wvy~v~p~~Ga~la~~~~~~~~~ 264 (288)
+..+.|+.+|+.+..++++.++.||..+|||||+||++..+ ++.++|+||++|++|+++|+++|+.++.
T Consensus 163 ~~~~apl~iGllv~~i~~s~g~~TG~aiNPARdlGprl~~~~~g~~~~~g~~~y~wipvigpiiGa~lg~~~~~~~~~ 240 (241)
T COG0580 163 NAGFAPLAIGLLVTAIGLSLGPTTGTAINPARDLGPRLAHSLAGWAANKGDSSYFWIPVIGPIVGAILGALLYKLLLG 240 (241)
T ss_pred cccchHHHHHHHHHHHHHHhcCCCCCccChHHHHHHHHHHHhcCcccCCCCCCeEeeeehHHHHHHHHHHHHHHHHcc
Confidence 33589999999999999999999999999999999999653 2248999999999999999999998764
No 7
>PTZ00016 aquaglyceroporin; Provisional
Probab=100.00 E-value=6.2e-46 Score=336.77 Aligned_cols=217 Identities=30% Similarity=0.446 Sum_probs=187.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHhcCCCCC
Q 039196 50 LNPARMVIAELVGTFILMLCVCGIMASTVLTRGEVGLLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFPLS 129 (288)
Q Consensus 50 ~~~~r~~~~EfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~ 129 (288)
++++|++++||+|||+|+|+++++...........+...+++++|+++++.+++++++||||+|||||+++++.|+++|.
T Consensus 47 ~~~~~~~laEfigT~llvf~g~g~~~~~~~~~~~~~~~~ial~~Glav~~~i~~~g~iSG~h~NPAVTla~~l~g~i~~~ 126 (294)
T PTZ00016 47 RPNVREYVAEFLGTFVLLFFGEGVVATTHTVGNNGDYLAITIGWGLGVTFGLLVSAGISGGHLNPAVTLGNAVFGKFPWK 126 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcHHHHHHHHHHHHHHHHHhcccCcCccCHHHHHHHHHhccCCHH
Confidence 66889999999999999999998876543322234566889999999999999999999999999999999999999999
Q ss_pred chhHHHHHHhHHHHHHHHHHHHHhcCc------------------CceeeccCCcchhHHHHHHHHHHHHHHHHHhhccc
Q 039196 130 KVPFYIMAQTAGSVLGTYIGILVYGIK------------------SNLMITRPAQHCVSAFWVELLATSIIVFLAASLAC 191 (288)
Q Consensus 130 ~~~~yi~aQ~~Ga~~g~~~~~~~~~~~------------------~~~~~~~p~~s~~~~~~~E~~~T~~Lv~~v~~~~~ 191 (288)
+.+.|+++|++|+++|+++++.++++. ...+.+.|+.+..++++.|+++|++|+++++...+
T Consensus 127 ~~~~YiiaQ~lGa~~ga~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~t~p~~s~~~a~~~E~i~T~iLv~~ila~~d 206 (294)
T PTZ00016 127 KLPGYFVAQLLGAFVGAACVYGLYYGFFKDHGIPELPWETMANGFAGVFATYPREGNFYAIFSELILTAILLLVILAITD 206 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCcccccccccccccceeeCCCCccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999987652 01234566677889999999999999999998855
Q ss_pred cccc-CCChhhHHHHHHHHHHHHHhccCCCCccchhhhHHHHHhh------cCCC----ceeeeeecchHHHHHHHHHHH
Q 039196 192 EAQC-FGNLSGFVVGVAIGLAVLITGPVSGGSMNPARSLGPAIVS------WNFS----DIWIYIIGPTIGAVAGGFVYR 260 (288)
Q Consensus 192 ~~~~-~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~~g~al~~------~~~~----~~wvy~v~p~~Ga~la~~~~~ 260 (288)
+++. .....|+.+|+++.+++++.++.||+++||||+|||+++. ..|. ++|+||+||++|+++|+++|+
T Consensus 207 ~~~~~~~~~~pl~IGl~v~~i~~~~g~~TG~smNPAR~fGPal~~~~~~g~~~~~~~~~~~WVy~vgP~vGa~~aally~ 286 (294)
T PTZ00016 207 PNNCPAFNYLPVAVGLLVFVIGISFGGNTGYALNPARDLGPRLFSAILWGSEVFTKDNYYFWVPLVAPFVGAVLGMFLYD 286 (294)
T ss_pred CccCCCcCcccHHHHHHHHHHHHhccCCCCCcccchhhHHHHHHHHHhccccccCcCCceeeeeehHHHHHHHHHHHHHH
Confidence 4442 2346799999999999999999999999999999999986 1343 689999999999999999999
Q ss_pred HhhcCC
Q 039196 261 FLRLRP 266 (288)
Q Consensus 261 ~~~~~~ 266 (288)
++..++
T Consensus 287 ~ll~~~ 292 (294)
T PTZ00016 287 KFIPPL 292 (294)
T ss_pred HHhCCC
Confidence 998655
No 8
>PRK05420 aquaporin Z; Provisional
Probab=100.00 E-value=2.2e-45 Score=323.26 Aligned_cols=213 Identities=29% Similarity=0.538 Sum_probs=182.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc-ccCCcchhHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHhcCCCCCch
Q 039196 53 ARMVIAELVGTFILMLCVCGIMASTVL-TRGEVGLLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFPLSKV 131 (288)
Q Consensus 53 ~r~~~~EfigT~~lvf~~~~~~~~~~~-~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~ 131 (288)
+|++++||+||++|+|+++++...... .+...+...+++++|+++++.+++++++||+|+|||||+++++.|+++|.+.
T Consensus 2 ~~~~laEfigT~~lv~~g~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSG~h~NPAvtl~~~~~~~i~~~~~ 81 (231)
T PRK05420 2 FKKLAAEFFGTFWLVFGGCGSAVLAAAFPELGIGFLGVALAFGLTVLTMAYAVGHISGGHFNPAVSVGLWAGGRFPAKEL 81 (231)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHhhcccCCCCCchHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHhCCCCHHHh
Confidence 689999999999999999987654322 1222346678999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhHHHHHHHHHHHHHhcCcCce------e------eccCC-cchhHHHHHHHHHHHHHHHHHhhcccccccCCC
Q 039196 132 PFYIMAQTAGSVLGTYIGILVYGIKSNL------M------ITRPA-QHCVSAFWVELLATSIIVFLAASLACEAQCFGN 198 (288)
Q Consensus 132 ~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~------~------~~~p~-~s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~~~~ 198 (288)
+.|+++|++|+++|+.+++.++++.... . .+.|. .+..++++.|+++|++|+++++...+ ++....
T Consensus 82 ~~Y~~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~T~iLv~~i~~~~~-~~~~~~ 160 (231)
T PRK05420 82 VPYIIAQVVGGIAAAAVLYLIASGKAGFDLAGSGFASNGYGEHSPGGYSLLAALVCEVVLTAFFLLVILGATD-KRAPAG 160 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCccccccccccccccccccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCc
Confidence 9999999999999999999888653110 0 12333 46789999999999999999998754 444456
Q ss_pred hhhHHHHHHHHHHHHHhccCCCCccchhhhHHHHHhhcCC--CceeeeeecchHHHHHHHHHHHHhhcCC
Q 039196 199 LSGFVVGVAIGLAVLITGPVSGGSMNPARSLGPAIVSWNF--SDIWIYIIGPTIGAVAGGFVYRFLRLRP 266 (288)
Q Consensus 199 ~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~~g~al~~~~~--~~~wvy~v~p~~Ga~la~~~~~~~~~~~ 266 (288)
..|+.+|+.+.+++++.+++||+++||||+|||+++.++| .++|+||++|++|+++++++|++++.++
T Consensus 161 ~~p~~iGl~v~~~~~~~~~~TG~s~NPAR~~gpal~~g~~~~~~~wvy~vgP~~Ga~laa~~y~~l~~~~ 230 (231)
T PRK05420 161 FAPIAIGLALTLIHLISIPVTNTSVNPARSTGVALFVGGWALEQLWLFWVAPIVGAIIGGLIYRLLLEKD 230 (231)
T ss_pred chHHHHHHHHHHHHHHhhccCCCccCcHHHHHHHHHhCCCCccceEEeehHHHHHHHHHHHHHHHHhccC
Confidence 7899999999999999999999999999999999997655 5899999999999999999999997643
No 9
>PLN00027 aquaporin TIP; Provisional
Probab=100.00 E-value=2.1e-45 Score=327.34 Aligned_cols=220 Identities=29% Similarity=0.459 Sum_probs=190.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccc-c-c---CCcchhHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHhc
Q 039196 50 LNPARMVIAELVGTFILMLCVCGIMASTVL-T-R---GEVGLLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVG 124 (288)
Q Consensus 50 ~~~~r~~~~EfigT~~lvf~~~~~~~~~~~-~-~---~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g 124 (288)
+..+|++++||+|||+|+|+++++.+.... . + ...+.+.+++++|+++++.+++++++||||+|||+|+++++.|
T Consensus 17 ~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~l~~~l~~Gl~v~~~i~~~~~iSGah~NPAvtl~~~~~g 96 (252)
T PLN00027 17 PDALKAALAEFISTLIFVFAGEGSGMAFNKLTDNGSTTPAGLVAAALAHAFALFVAVSVGANISGGHVNPAVTFGAFIGG 96 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcchHHHHHHHHHHHHHHHHHHcccCccccChHHHHHHHHhC
Confidence 567899999999999999999998653211 1 1 1235667899999999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHhHHHHHHHHHHHHHhcCc-CceeeccCCcchhHHHHHHHHHHHHHHHHHhhccccccc--CCChhh
Q 039196 125 HFPLSKVPFYIMAQTAGSVLGTYIGILVYGIK-SNLMITRPAQHCVSAFWVELLATSIIVFLAASLACEAQC--FGNLSG 201 (288)
Q Consensus 125 ~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~-~~~~~~~p~~s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~--~~~~~~ 201 (288)
+++|.+.++|+++|++|+++|+.+++.+.++. .....+.|..+..++++.|+++||+|+++++....|++. .+.+.|
T Consensus 97 ~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~~~~~~~~p 176 (252)
T PLN00027 97 NITLLRGILYWIAQLLGSVVACLLLKFSTGGLETSAFSLSSGVGVWNAFVFEIVMTFGLVYTVYATAVDPKKGDLGIIAP 176 (252)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCccHHHHHHHHHHHHHHHHHHHHHhccccccCCccchHH
Confidence 99999999999999999999999998877553 233445667889999999999999999999887655542 234789
Q ss_pred HHHHHHHHHHHHHhccCCCCccchhhhHHHHHhhcCCCceeeeeecchHHHHHHHHHHHHhhcCCCCC
Q 039196 202 FVVGVAIGLAVLITGPVSGGSMNPARSLGPAIVSWNFSDIWIYIIGPTIGAVAGGFVYRFLRLRPRAC 269 (288)
Q Consensus 202 ~~ig~~v~~~~~~~~~~sG~~lNPA~~~g~al~~~~~~~~wvy~v~p~~Ga~la~~~~~~~~~~~~~~ 269 (288)
+.+|+.+..++++++++||+++||||+|||+++...|.++|+||+||++|+++++++|++++.+++.+
T Consensus 177 ~~iGl~v~~~~~~~g~~TG~~~NPAR~~gPal~~~~~~~~wvy~vgP~~Ga~laa~~y~~l~~~~~~~ 244 (252)
T PLN00027 177 IAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWAGPLIGGGIAGLVYELIFIGSTTH 244 (252)
T ss_pred HHHHHHHHHHHHhcccccccccCcchhHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999998654433
No 10
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.7e-47 Score=332.83 Aligned_cols=221 Identities=29% Similarity=0.508 Sum_probs=196.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC-cchhHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHhcCCC
Q 039196 49 DLNPARMVIAELVGTFILMLCVCGIMASTVLTRGE-VGLLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFP 127 (288)
Q Consensus 49 ~~~~~r~~~~EfigT~~lvf~~~~~~~~~~~~~~~-~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~ 127 (288)
++.+.|++++||+||++|++++++++++...+.+. .++..+.++||+++++.+|+.+++||||+|||||+++++.|++|
T Consensus 28 ~~~l~Re~LAEFlGT~vL~~~G~g~v~Q~vls~g~~g~~~~vnlgwg~av~~gVyvag~iSGgHlNPAVS~a~~~~g~~p 107 (316)
T KOG0224|consen 28 RNELLREFLAEFLGTFVLVVFGLGSVAQAVLSGGTGGSFIGVNLGWGFAVMMGVYVAGRISGGHLNPAVSLAMCILGRLP 107 (316)
T ss_pred HHHHHHHHHHHHHhHHHHHhhccceeEEEEeccCCCCceEEEEehHhHHHHHHHHhhccccccccCHHHHHHHHHhcCCC
Confidence 47799999999999999999999999888876433 45678899999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHhHHHHHHHHHHHHHhcCc-----------------CceeeccCC--cchhHHHHHHHHHHHHHHHHHhh
Q 039196 128 LSKVPFYIMAQTAGSVLGTYIGILVYGIK-----------------SNLMITRPA--QHCVSAFWVELLATSIIVFLAAS 188 (288)
Q Consensus 128 ~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~-----------------~~~~~~~p~--~s~~~~~~~E~~~T~~Lv~~v~~ 188 (288)
|++.++|+++|++||++|++.+|.++++. ...++|.|. .+.+++|+.|+++|.+|+..++.
T Consensus 108 ~~k~p~Y~~aQ~iGAF~gaa~~y~~y~d~i~~f~Gg~~~vtgp~aTAgiFaTyP~p~ls~~n~F~DqfigTa~L~~~l~a 187 (316)
T KOG0224|consen 108 WKKFPVYVLAQFIGAFLGAATVYGLYYDAINEFDGGNRTVTGPKATAGIFATYPAPHLSLWNGFFDQFIGTAMLVLCLFA 187 (316)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEecCCccceEEEeecCchHhhhhHHHHHHHHHHHHHHhheeE
Confidence 99999999999999999999999998876 124567776 68999999999999999999988
Q ss_pred cccccc-cCCChhhHHHHHHHHHHHHHhccCCCCccchhhhHHHHHhhc----C-------CCceeeeeecchHHHHHHH
Q 039196 189 LACEAQ-CFGNLSGFVVGVAIGLAVLITGPVSGGSMNPARSLGPAIVSW----N-------FSDIWIYIIGPTIGAVAGG 256 (288)
Q Consensus 189 ~~~~~~-~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~~g~al~~~----~-------~~~~wvy~v~p~~Ga~la~ 256 (288)
+.++.+ ....+.|+.+|+.+.++.++.+..+|..+|||||||||++.. + -.++|+.|++|++|+++++
T Consensus 188 I~D~rN~~p~g~~p~~iG~lv~~Ig~s~G~N~GyaiNPARDlgPRlF~~~aGyG~~vF~~~~~~~WvPivgPl~Gai~G~ 267 (316)
T KOG0224|consen 188 ITDKRNPIPTGLHPLVIGILVVAIGMSLGYNTGYAINPARDLGPRLFTSIAGYGPEVFSAGHNWWWVPIVGPLIGAILGG 267 (316)
T ss_pred EecCCCCCCcchhHHHHHHHHHHHHHHhhcccCcccCcccccchHHHHHHHhcchhhcccCCceeeeeehhhhhhhhhhh
Confidence 855544 445678999999999999999999999999999999999841 1 2568899999999999999
Q ss_pred HHHHHhhcCCCCC
Q 039196 257 FVYRFLRLRPRAC 269 (288)
Q Consensus 257 ~~~~~~~~~~~~~ 269 (288)
++|.+++..+.++
T Consensus 268 ~iY~~~Ig~h~~~ 280 (316)
T KOG0224|consen 268 WIYDFFIGFHIPR 280 (316)
T ss_pred hhheeeeeccCCC
Confidence 9999999887774
No 11
>PLN00166 aquaporin TIP2; Provisional
Probab=100.00 E-value=3e-45 Score=325.39 Aligned_cols=221 Identities=30% Similarity=0.525 Sum_probs=189.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhc-cccc----CCcchhHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHh
Q 039196 49 DLNPARMVIAELVGTFILMLCVCGIMAST-VLTR----GEVGLLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVV 123 (288)
Q Consensus 49 ~~~~~r~~~~EfigT~~lvf~~~~~~~~~-~~~~----~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPavTla~~l~ 123 (288)
+.+.+|++++||+|||+|+|+++++.... ...+ ...+++.+++++|+.+++.+++++++||+|+|||+|+++++.
T Consensus 14 ~~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSGah~NPAvt~~~~l~ 93 (250)
T PLN00166 14 SVASLKAYLSEFIATLLFVFAGVGSAIAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAIG 93 (250)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCccHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHh
Confidence 36678999999999999999999986642 1111 123466789999999999999999999999999999999999
Q ss_pred cCCCCCchhHHHHHHhHHHHHHHHHHHHHhcCcCc-eeeccCCcchhHHHHHHHHHHHHHHHHHhhccccccc--CCChh
Q 039196 124 GHFPLSKVPFYIMAQTAGSVLGTYIGILVYGIKSN-LMITRPAQHCVSAFWVELLATSIIVFLAASLACEAQC--FGNLS 200 (288)
Q Consensus 124 g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~-~~~~~p~~s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~--~~~~~ 200 (288)
|+++|.+.++|+++|++|+++|+.+.+.++++... .....+..+..++++.|+++|++|+++++....+++. .+.+.
T Consensus 94 g~~~~~~~~~y~~aq~lGa~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~Tf~Lv~~i~~~~~~~~~~~~~~~~ 173 (250)
T PLN00166 94 GNITIITGFFYWIAQCLGSIVACLLLVFVTNGESVPTHGVAAGLGAIEGVVMEIVVTFALVYTVYATAADPKKGSLGTIA 173 (250)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccCCCCcHHHHHHHHHHHHHHHHHHHHHhcccccccccccch
Confidence 99999999999999999999999999988765321 1123345678899999999999999999987666552 23478
Q ss_pred hHHHHHHHHHHHHHhccCCCCccchhhhHHHHHhhcCCCceeeeeecchHHHHHHHHHHHHhhcCCCCC
Q 039196 201 GFVVGVAIGLAVLITGPVSGGSMNPARSLGPAIVSWNFSDIWIYIIGPTIGAVAGGFVYRFLRLRPRAC 269 (288)
Q Consensus 201 ~~~ig~~v~~~~~~~~~~sG~~lNPA~~~g~al~~~~~~~~wvy~v~p~~Ga~la~~~~~~~~~~~~~~ 269 (288)
|+.+|+++.++++..+++||+++||||+|||+++.++|.++|+||+||++|+++|+++|+.++.+...+
T Consensus 174 p~~iGl~v~~~~~~~~~~tG~~~NPAR~~gPal~~~~~~~~wvywvgPi~Ga~~aa~~y~~l~~~~~~~ 242 (250)
T PLN00166 174 PIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLVGGALAGLIYGDVFIGSYAA 242 (250)
T ss_pred hHHHHHHHHHHHHcccCCCCCccCchHhhHHHHhcCCCcccchhhHHHHHHHHHHHHHHHHHhcccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999887544433
No 12
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=100.00 E-value=5e-46 Score=327.56 Aligned_cols=213 Identities=37% Similarity=0.648 Sum_probs=185.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHhcccccC------CcchhHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHH
Q 039196 47 DIDLNPARMVIAELVGTFILMLCVCGIMASTVLTRG------EVGLLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAF 120 (288)
Q Consensus 47 ~~~~~~~r~~~~EfigT~~lvf~~~~~~~~~~~~~~------~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPavTla~ 120 (288)
.++++++|++++||+||++++|+++++......... ..++..+++++|+++++.+++++++||||+|||||++.
T Consensus 2 ~~~~~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~ial~~g~~~~~~i~~~~~iSGaH~NPaVTla~ 81 (227)
T PF00230_consen 2 LKSPSLWRKFLAEFIGTFLLVFFGCGSVAALNGSTSSSGSDVSGGWLQIALAWGLALAALIYAFGPISGAHFNPAVTLAF 81 (227)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSTTSTTSSHHHHHHHHHHHHHHHHHHHHHHHHHTSS-SHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHhhhhhhhhhhhccccccccchhhhe
Confidence 456789999999999999999999986653332211 12567889999999999999999999999999999999
Q ss_pred HHhcCCCCCchhHHHHHHhHHHHHHHHHHHHHhcCc---Cceee--ccCCcchhHHHHHHHHHHHHHHHHHhhccccccc
Q 039196 121 AVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVYGIK---SNLMI--TRPAQHCVSAFWVELLATSIIVFLAASLACEAQC 195 (288)
Q Consensus 121 ~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~---~~~~~--~~p~~s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~ 195 (288)
++.|+++|.+.+.|+++|++|+++|+.+.+.++++. ..... ..|..+..++++.|+++|++|+++++...++++.
T Consensus 82 ~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~t~il~~~i~~~~~~~~~ 161 (227)
T PF00230_consen 82 ALTGRISWKKAIVYIIAQFLGAFLGALLVYALYPDSNSAAGIFATTPPPGISLGQAFFSEFIGTFILVLVILAVADDKRK 161 (227)
T ss_dssp HHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHSTHHHTCTTTTSCGSTTTSSHHHHHHHHHHHHHHHHHHHHHHTSTTSS
T ss_pred eeeeeecccceeeEEeeccccccccccchhhcccCcccccccccccccccchhhhhhhhhhhhhhHHHhhhhhhcccccc
Confidence 999999999999999999999999999999999884 22233 3444789999999999999999999998777763
Q ss_pred C--CChhhHHHHHHHHHHHHHhccCCCCccchhhhHHHHHhhcCCCceeeeeecchHHHHHHHHHH
Q 039196 196 F--GNLSGFVVGVAIGLAVLITGPVSGGSMNPARSLGPAIVSWNFSDIWIYIIGPTIGAVAGGFVY 259 (288)
Q Consensus 196 ~--~~~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~~g~al~~~~~~~~wvy~v~p~~Ga~la~~~~ 259 (288)
. +.+.|+.+|+++.+..+..++.||+++||||+||++++...|+++|+||++|++|+++|+++|
T Consensus 162 ~~~~~~~p~~ig~~v~~~~~~~~~~tG~~~NPAr~~g~~l~~~~~~~~wvy~~~P~~Ga~~a~~~Y 227 (227)
T PF00230_consen 162 FPLGPLAPLAIGLTVGALVLAGGPYTGASLNPARALGPALFSGIWDYFWVYWVGPFIGAILAALLY 227 (227)
T ss_dssp STSSGGHHHHHHHHHHHHHHHHHHHHST-SSHHHHHHHHHHHTHHTTTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccceeEEEEEeecccccccccccccCchhhcCceeecccCCeEEEEEehHHHHHHHHHhhC
Confidence 3 346899999999999999999999999999999999999999999999999999999999987
No 13
>PLN00167 aquaporin TIP5; Provisional
Probab=100.00 E-value=1.5e-44 Score=321.79 Aligned_cols=222 Identities=27% Similarity=0.411 Sum_probs=188.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHhccc--cc---CCcchhHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHH
Q 039196 48 IDLNPARMVIAELVGTFILMLCVCGIMASTVL--TR---GEVGLLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAV 122 (288)
Q Consensus 48 ~~~~~~r~~~~EfigT~~lvf~~~~~~~~~~~--~~---~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPavTla~~l 122 (288)
..++.+|++++||+|||+|+|+++++...... .+ ...+++.+++++|+++++.+++++++||+|+|||||++.++
T Consensus 17 ~~~~~~~~~laEflgTf~lv~~~~g~~~~~~~~~~~~~~~~~~~~~i~l~~Gl~v~~~i~~~g~iSGah~NPAvtl~~~~ 96 (256)
T PLN00167 17 VTRNALRSYLAEFISTFFFVFAAVGSAMSSRKLMPDAASDPSSLLIVAIANAFALSSAVYIAANISGGHVNPAVTFGMAV 96 (256)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccCCCCcchHHHHHHHHHHHHHHHHhhcccccccCHHHHHHHHH
Confidence 35778999999999999999999998764321 11 12357789999999999999999999999999999999999
Q ss_pred hcCCCCCchhHHHHHHhHHHHHHHHHHHHHhcCcC-ceeeccCCcchhHHHHHHHHHHHHHHHHHhhccccccc-CCChh
Q 039196 123 VGHFPLSKVPFYIMAQTAGSVLGTYIGILVYGIKS-NLMITRPAQHCVSAFWVELLATSIIVFLAASLACEAQC-FGNLS 200 (288)
Q Consensus 123 ~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~-~~~~~~p~~s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~-~~~~~ 200 (288)
.|+++|.+++.|+++|++|+++|+.+++.++++.. ......+..+..++++.|+++|++|+++++...++++. .+...
T Consensus 97 ~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~i~T~~L~~~i~~~~~~~~~~~~~~~ 176 (256)
T PLN00167 97 GGHISVPTAMFYWISQMLASVMACLFLKVTTVGQHVPTYKIAEEMTGFGASVLEGVLTFGLVYTVYAAGDPRRGLLGAIG 176 (256)
T ss_pred hCCCcHhhhhHHHHHHHHHHHHHHHHHHHhhccccccccccCcccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCcc
Confidence 99999999999999999999999999998876531 11111223566789999999999999999887544332 23467
Q ss_pred hHHHHHHHHHHHHHhccCCCCccchhhhHHHHHhhcCCCceeeeeecchHHHHHHHHHHHHhhcCCCCC
Q 039196 201 GFVVGVAIGLAVLITGPVSGGSMNPARSLGPAIVSWNFSDIWIYIIGPTIGAVAGGFVYRFLRLRPRAC 269 (288)
Q Consensus 201 ~~~ig~~v~~~~~~~~~~sG~~lNPA~~~g~al~~~~~~~~wvy~v~p~~Ga~la~~~~~~~~~~~~~~ 269 (288)
|+.+|+++.++.++.+++||+++||||+|||+++...|.++|+||+||++|+++++++|++++.+...+
T Consensus 177 pl~iGl~v~~~~~~~g~~TG~a~NPAR~~gPal~~~~~~~~wvywvgP~~Ga~l~a~~y~~l~~~~~~~ 245 (256)
T PLN00167 177 PLAIGLVAGANVLAAGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLLGGAVAGLLYDNVVFPTQDD 245 (256)
T ss_pred hHHHHHHHHHHHHhccCCCCcccCcccchHHHHhccCccCcEEEeHHHHHHHHHHHHHHHHHhCCCcCC
Confidence 999999999999999999999999999999999998899999999999999999999999998755443
No 14
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=100.00 E-value=4.1e-42 Score=302.88 Aligned_cols=209 Identities=40% Similarity=0.676 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccc-CCcchhHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHhcCCCCCchh
Q 039196 54 RMVIAELVGTFILMLCVCGIMASTVLTR-GEVGLLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFPLSKVP 132 (288)
Q Consensus 54 r~~~~EfigT~~lvf~~~~~~~~~~~~~-~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~ 132 (288)
|++++||+|||+++|.++++.......+ ...+...+++++|+++.+.+++++++||+|+|||+|++.++.|+++|.+.+
T Consensus 1 r~~~~E~~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~v~~~~~~~~~~sga~~NPa~t~~~~~~~~~~~~~~~ 80 (228)
T cd00333 1 RKYLAEFLGTFLLVFFGCGSVLAVKLAGGASGGLLGIALAWGFAIFVLVYAVGHISGGHINPAVTLALAVGGRFPLIRVI 80 (228)
T ss_pred ChhhHHHHHHHHHHHHHhHHHhhccccCCCCCcHHHHHHHHHHHHHHHHHHhccCCCCeEcHHHHHHHHHhCCCCHHHHH
Confidence 5789999999999999999877655332 223456789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHhcCcCc-----------eeeccCC--cchhHHHHHHHHHHHHHHHHHhhccccccc--CC
Q 039196 133 FYIMAQTAGSVLGTYIGILVYGIKSN-----------LMITRPA--QHCVSAFWVELLATSIIVFLAASLACEAQC--FG 197 (288)
Q Consensus 133 ~yi~aQ~~Ga~~g~~~~~~~~~~~~~-----------~~~~~p~--~s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~--~~ 197 (288)
+|+++|++|+++|+.+.+.++++... ...+.|. .+..++++.|+++|++|+++++....+++. ..
T Consensus 81 ~y~~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~T~~Lv~~i~~~~~~~~~~~~~ 160 (228)
T cd00333 81 PYIIAQLLGAILGAALLYGLYYGLYLEFLGANNIVAGIFGTYPSPGVSNGNAFFVEFIGTFILVLVVFATTDDPNGPPPG 160 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhcCCccccccceeccCCCCCccHHHHHHHHHHHHHHHHHHHHHHccccccCCCC
Confidence 99999999999999999998876411 1123343 578899999999999999999988654442 34
Q ss_pred ChhhHHHHHHHHHHHHHhccCCCCccchhhhHHHHHhhcC---CCceeeeeecchHHHHHHHHHHHHh
Q 039196 198 NLSGFVVGVAIGLAVLITGPVSGGSMNPARSLGPAIVSWN---FSDIWIYIIGPTIGAVAGGFVYRFL 262 (288)
Q Consensus 198 ~~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~~g~al~~~~---~~~~wvy~v~p~~Ga~la~~~~~~~ 262 (288)
...++.+|+++.+.+++++++||+++||||++++++++.. |+++|+||++|++|+++|+++|+++
T Consensus 161 ~~~~~~iGl~v~~~~~~~g~~sG~~~NPAr~~g~~i~~~~~~~~~~~~vy~vap~lGai~aa~l~~~~ 228 (228)
T cd00333 161 GLAPLAIGLLVAAIGLAGGPITGASMNPARSLGPALFTGLARHWHYFWVYWVGPLIGAIAGALVYDYV 228 (228)
T ss_pred CcHHHHHHHHHHHHHHHhhcccccccCHhhchHHHHHhccccccceeehhhhHHHHHHHHHHHHHHhC
Confidence 4678999999999999999999999999999999999875 9999999999999999999999874
No 15
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=100.00 E-value=4.6e-40 Score=287.61 Aligned_cols=202 Identities=37% Similarity=0.615 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccccc--CC---cchhHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHhcCCCCCchh
Q 039196 58 AELVGTFILMLCVCGIMASTVLTR--GE---VGLLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFPLSKVP 132 (288)
Q Consensus 58 ~EfigT~~lvf~~~~~~~~~~~~~--~~---~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~ 132 (288)
+||+||++++|+++++.......+ +. .+...+++++|+++.+.+++++++||+|+|||||++.++.|+++|.+.+
T Consensus 1 aEf~gT~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~Gl~v~~~~~~~~~~sg~h~NPavt~~~~l~~~~~~~~~~ 80 (216)
T TIGR00861 1 AEFLGTFLLVFFGVGSALGVNVAGAYGAVGGGQFLGVALAFGLAVATLVYCVGGISGAHLNPAVTIALLLGRRFPLKRVP 80 (216)
T ss_pred CcHHHHHHHHHHHHHHHHhhhcccccCCCCCcchHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHhCCCCHHHHH
Confidence 599999999999999876633221 11 1466789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHhcCcC--c-eeec--cCCcchhHHHHHHHHHHHHHHHHHhhccccccc--CCChhhHHHH
Q 039196 133 FYIMAQTAGSVLGTYIGILVYGIKS--N-LMIT--RPAQHCVSAFWVELLATSIIVFLAASLACEAQC--FGNLSGFVVG 205 (288)
Q Consensus 133 ~yi~aQ~~Ga~~g~~~~~~~~~~~~--~-~~~~--~p~~s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~--~~~~~~~~ig 205 (288)
+|+++|++|+++|+.+.+.++++.. . .... .+..+..++++.|+++|++|+++++....+++. .+...++.+|
T Consensus 81 ~y~~aQ~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~~~~~~~~~~~iG 160 (216)
T TIGR00861 81 VYIVAQLIGAILGAALLYGLTSGLFPGNLAVNGSGAAGVSSGQAFFVEFIGTAILVLVIFATTDPRNRVPRGGFAPLAIG 160 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccccCCccccCCCCCcccHHHHHHHHHHHHHHHHHHHheeecCCCCCCCCccHHHHHH
Confidence 9999999999999999999887642 1 1121 223688999999999999999999987554332 2236899999
Q ss_pred HHHHHHHHHhccCCCCccchhhhHHHHHhhc--CCCceeeeeecchHHHHHHHHHH
Q 039196 206 VAIGLAVLITGPVSGGSMNPARSLGPAIVSW--NFSDIWIYIIGPTIGAVAGGFVY 259 (288)
Q Consensus 206 ~~v~~~~~~~~~~sG~~lNPA~~~g~al~~~--~~~~~wvy~v~p~~Ga~la~~~~ 259 (288)
+.+...+++.+++||+++||||+++++++.. +|.++|+||++|++|+++++++|
T Consensus 161 ~~v~~~~~~~g~~sG~~~NPAr~l~~~l~~~~~~~~~~~vy~vap~~Ga~~a~~~y 216 (216)
T TIGR00861 161 LLVFLIHLSMGPYTGTGMNPARSLGPALFAGLAGWGNHWVYWVGPIIGAILGALVY 216 (216)
T ss_pred HHHHHHHHhCCCCcccccCchhhhhHHHHhccccccceeHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987 89999999999999999999875
No 16
>PLN00184 aquaporin NIP1; Provisional
Probab=99.63 E-value=5e-16 Score=141.11 Aligned_cols=101 Identities=22% Similarity=0.278 Sum_probs=85.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhcccccc--c-CCCh--hhHHHHHHHHHHHHHhccCCCCccchhhhHHHHHhhc-CCC
Q 039196 166 QHCVSAFWVELLATSIIVFLAASLACEAQ--C-FGNL--SGFVVGVAIGLAVLITGPVSGGSMNPARSLGPAIVSW-NFS 239 (288)
Q Consensus 166 ~s~~~~~~~E~~~T~~Lv~~v~~~~~~~~--~-~~~~--~~~~ig~~v~~~~~~~~~~sG~~lNPA~~~g~al~~~-~~~ 239 (288)
.+.++.++.|+++||+|++++++...... . .... .++.+|+++++.+++++++||+|+|||+++++++.+. +|.
T Consensus 51 ~~~~~~~~aEfiGTflLvf~g~g~~~~~~~~~~~~~~~~iai~~Gl~v~~~i~~~g~iSGaH~NPAVTla~al~g~~~~~ 130 (296)
T PLN00184 51 VPFLQKLIAEVLGTYFLVFTGCASVVVNMQNDNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASCGRFPLK 130 (296)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHhCCCCHH
Confidence 45678999999999999999987643221 1 1123 3567799999999999999999999999999999887 899
Q ss_pred ceeeeeecchHHHHHHHHHHHHhhcCC
Q 039196 240 DIWIYIIGPTIGAVAGGFVYRFLRLRP 266 (288)
Q Consensus 240 ~~wvy~v~p~~Ga~la~~~~~~~~~~~ 266 (288)
+.|+||++|++|+++|+++++.++...
T Consensus 131 ~~~~YiiaQllGA~lga~~~~~l~~~~ 157 (296)
T PLN00184 131 QVPAYVISQVIGSTLAAATLRLLFGLD 157 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 999999999999999999999998643
No 17
>PLN00026 aquaporin NIP; Provisional
Probab=99.62 E-value=5.5e-16 Score=140.59 Aligned_cols=100 Identities=19% Similarity=0.274 Sum_probs=85.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhcccccc-cC---CCh-hhHHHHHHHHHHHHHhccCCCCccchhhhHHHHHhhc-CCC
Q 039196 166 QHCVSAFWVELLATSIIVFLAASLACEAQ-CF---GNL-SGFVVGVAIGLAVLITGPVSGGSMNPARSLGPAIVSW-NFS 239 (288)
Q Consensus 166 ~s~~~~~~~E~~~T~~Lv~~v~~~~~~~~-~~---~~~-~~~~ig~~v~~~~~~~~~~sG~~lNPA~~~g~al~~~-~~~ 239 (288)
.+.++.++.|+++||+|+++++.....++ .. ..+ .++.+|+++++.+++++++||+|+||||++++++.+. +|.
T Consensus 68 ~~~~r~~laEfiGTflLvf~g~~~~~~~~~~~~~~~~~~ial~~GlaV~~~i~~~g~ISGaHlNPAVTla~al~g~~~~~ 147 (298)
T PLN00026 68 VSLTRKLGAEFVGTFILIFAATAGPIVNQKYDGAETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAALRHFPWK 147 (298)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhCCCcHH
Confidence 56789999999999999999986533221 11 122 3579999999999999999999999999999999876 799
Q ss_pred ceeeeeecchHHHHHHHHHHHHhhcC
Q 039196 240 DIWIYIIGPTIGAVAGGFVYRFLRLR 265 (288)
Q Consensus 240 ~~wvy~v~p~~Ga~la~~~~~~~~~~ 265 (288)
+.|+||++|++|+++|+++++.++.+
T Consensus 148 ~~~~YiiaQilGAi~aa~~~~~~~~~ 173 (298)
T PLN00026 148 HVPAYIAAQVSASICASFALKGVFHP 173 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999865
No 18
>PLN00182 putative aquaporin NIP4; Provisional
Probab=99.59 E-value=6e-15 Score=133.26 Aligned_cols=99 Identities=28% Similarity=0.476 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHhcCCCCCc
Q 039196 51 NPARMVIAELVGTFILMLCVCGIMASTVLTRGEVGLLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFPLSK 130 (288)
Q Consensus 51 ~~~r~~~~EfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~ 130 (288)
+.++.++.||++|++|+|++++...... .. +. ..++.+|+.+++.+++.+++||+|+|||+|++.++.++ .|.+
T Consensus 157 s~~~a~~~E~l~TfiLv~~i~~~~~~~~---~~-~~-~~~l~iGl~V~~~~~~~g~~SGa~lNPARt~gpal~~~-~~~~ 230 (283)
T PLN00182 157 SSGQALVAEIIISFLLMFVISGVATDSR---AV-GE-LAGIAVGMTIILNVFVAGPISGASMNPARSLGPAIVMG-RYKG 230 (283)
T ss_pred chHHHHHHHHHHHHHHHHHHHhheeccc---cC-Cc-chhHHHHHHHHHHHHHccccCccccChHHHHHHHHHhc-cccc
Confidence 4689999999999999999887543221 11 11 25788999999999999999999999999999999865 5899
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHhcC
Q 039196 131 VPFYIMAQTAGSVLGTYIGILVYGI 155 (288)
Q Consensus 131 ~~~yi~aQ~~Ga~~g~~~~~~~~~~ 155 (288)
.|+||++|++|+++|+++.+.+...
T Consensus 231 ~wvY~vap~lGA~lgally~~l~~~ 255 (283)
T PLN00182 231 IWVYIVGPFVGIIAGGFVYNLIRFT 255 (283)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999988753
No 19
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=99.57 E-value=1.3e-14 Score=127.83 Aligned_cols=100 Identities=22% Similarity=0.275 Sum_probs=84.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHhcCC--
Q 039196 49 DLNPARMVIAELVGTFILMLCVCGIMASTVLTRGEVGLLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHF-- 126 (288)
Q Consensus 49 ~~~~~r~~~~EfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~-- 126 (288)
+.+.+|.++.|+++|++|++..+......+. .......++.+|+.+..+++..+++||+|+|||+|++.++.++.
T Consensus 126 ~~~~~~~~~~E~v~T~~Lv~~i~~~~~~~~~---~~~~~~~~~~iGl~v~~~~~~~g~~sG~~~NPAr~~g~~i~~~~~~ 202 (228)
T cd00333 126 GVSNGNAFFVEFIGTFILVLVVFATTDDPNG---PPPGGLAPLAIGLLVAAIGLAGGPITGASMNPARSLGPALFTGLAR 202 (228)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHcccccc---CCCCCcHHHHHHHHHHHHHHHhhcccccccCHhhchHHHHHhcccc
Confidence 3567899999999999999999876432211 11223467889999999999999999999999999999999998
Q ss_pred CCCchhHHHHHHhHHHHHHHHHHHH
Q 039196 127 PLSKVPFYIMAQTAGSVLGTYIGIL 151 (288)
Q Consensus 127 ~~~~~~~yi~aQ~~Ga~~g~~~~~~ 151 (288)
+|.+.|+||++|++|+++|+++.+.
T Consensus 203 ~~~~~~vy~vap~lGai~aa~l~~~ 227 (228)
T cd00333 203 HWHYFWVYWVGPLIGAIAGALVYDY 227 (228)
T ss_pred ccceeehhhhHHHHHHHHHHHHHHh
Confidence 8999999999999999999988654
No 20
>PLN00183 putative aquaporin NIP7; Provisional
Probab=99.57 E-value=4.3e-15 Score=133.73 Aligned_cols=105 Identities=21% Similarity=0.285 Sum_probs=88.7
Q ss_pred eccCC---cchhHHHHHHHHHHHHHHHHHhhcccccccC---CCh--hhHHHHHHHHHHHHHhccCCCCccchhhhHHHH
Q 039196 161 ITRPA---QHCVSAFWVELLATSIIVFLAASLACEAQCF---GNL--SGFVVGVAIGLAVLITGPVSGGSMNPARSLGPA 232 (288)
Q Consensus 161 ~~~p~---~s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~~---~~~--~~~~ig~~v~~~~~~~~~~sG~~lNPA~~~g~a 232 (288)
...|. .+.++.++.|+++||+++++.+.....++.. ..+ .++.+|+++.+.+++.+++||+++|||++++++
T Consensus 34 ~~~~~~~~~~~~~~~laEfigTfllvf~~~g~~~~~~~~~~~~~~~~~al~~Gl~V~~~i~~~g~vSGah~NPAvTla~~ 113 (274)
T PLN00183 34 GCLPYDMDLNPARMVLAEMVGTFILMFCVCGIIASTQLSGGEVGLLEYAATAGLTVVVVVFSIGSISGAHVNPSVTIAFA 113 (274)
T ss_pred cccCCcCChHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHH
Confidence 34554 4677999999999999999998875543311 122 467899999999999999999999999999999
Q ss_pred Hhhc-CCCceeeeeecchHHHHHHHHHHHHhhcC
Q 039196 233 IVSW-NFSDIWIYIIGPTIGAVAGGFVYRFLRLR 265 (288)
Q Consensus 233 l~~~-~~~~~wvy~v~p~~Ga~la~~~~~~~~~~ 265 (288)
+.+. +|...|+||++|++|+++|+.+++.++..
T Consensus 114 l~g~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~ 147 (274)
T PLN00183 114 TFGHFPWSKVPLYITAQTVGSVLATYVGVSVYGV 147 (274)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9976 78999999999999999999999998864
No 21
>PLN00167 aquaporin TIP5; Provisional
Probab=99.55 E-value=1.4e-14 Score=129.43 Aligned_cols=100 Identities=21% Similarity=0.333 Sum_probs=85.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhcccccc---c-C------CChhhHHHHHHHHHHHHHhccCCCCccchhhhHHHHHhh
Q 039196 166 QHCVSAFWVELLATSIIVFLAASLACEAQ---C-F------GNLSGFVVGVAIGLAVLITGPVSGGSMNPARSLGPAIVS 235 (288)
Q Consensus 166 ~s~~~~~~~E~~~T~~Lv~~v~~~~~~~~---~-~------~~~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~~g~al~~ 235 (288)
.+.++.++.|+++|++|+++.+....+.+ . . ....++.+|+++.+.+++++++||+++|||+++++++.+
T Consensus 19 ~~~~~~~laEflgTf~lv~~~~g~~~~~~~~~~~~~~~~~~~~~i~l~~Gl~v~~~i~~~g~iSGah~NPAvtl~~~~~g 98 (256)
T PLN00167 19 RNALRSYLAEFISTFFFVFAAVGSAMSSRKLMPDAASDPSSLLIVAIANAFALSSAVYIAANISGGHVNPAVTFGMAVGG 98 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccCCCCcchHHHHHHHHHHHHHHHHhhcccccccCHHHHHHHHHhC
Confidence 35678999999999999999988754321 1 0 113689999999999999999999999999999999987
Q ss_pred c-CCCceeeeeecchHHHHHHHHHHHHhhcC
Q 039196 236 W-NFSDIWIYIIGPTIGAVAGGFVYRFLRLR 265 (288)
Q Consensus 236 ~-~~~~~wvy~v~p~~Ga~la~~~~~~~~~~ 265 (288)
. .|...|+||++|++|+++|+.+++.++..
T Consensus 99 ~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~ 129 (256)
T PLN00167 99 HISVPTAMFYWISQMLASVMACLFLKVTTVG 129 (256)
T ss_pred CCcHhhhhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5 68999999999999999999999988654
No 22
>PLN00166 aquaporin TIP2; Provisional
Probab=99.53 E-value=1.5e-14 Score=128.96 Aligned_cols=100 Identities=25% Similarity=0.335 Sum_probs=84.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhcccc--cc--c----C-CC-hhhHHHHHHHHHHHHHhccCCCCccchhhhHHHHHhh
Q 039196 166 QHCVSAFWVELLATSIIVFLAASLACE--AQ--C----F-GN-LSGFVVGVAIGLAVLITGPVSGGSMNPARSLGPAIVS 235 (288)
Q Consensus 166 ~s~~~~~~~E~~~T~~Lv~~v~~~~~~--~~--~----~-~~-~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~~g~al~~ 235 (288)
.+..++++.|+++|++|+++.+....+ +. . . +. ..++.+|+++++.+++++++||+++||||++++++.+
T Consensus 15 ~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSGah~NPAvt~~~~l~g 94 (250)
T PLN00166 15 VASLKAYLSEFIATLLFVFAGVGSAIAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAIGG 94 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCccHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHhC
Confidence 456788999999999999999887543 11 1 1 11 2467899999999999999999999999999999986
Q ss_pred c-CCCceeeeeecchHHHHHHHHHHHHhhcC
Q 039196 236 W-NFSDIWIYIIGPTIGAVAGGFVYRFLRLR 265 (288)
Q Consensus 236 ~-~~~~~wvy~v~p~~Ga~la~~~~~~~~~~ 265 (288)
. +|.+.|+||++|++|+++|+.+++.++..
T Consensus 95 ~~~~~~~~~y~~aq~lGa~~~a~~~~~~~~~ 125 (250)
T PLN00166 95 NITIITGFFYWIAQCLGSIVACLLLVFVTNG 125 (250)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 5 68899999999999999999999988753
No 23
>PTZ00016 aquaglyceroporin; Provisional
Probab=99.49 E-value=2.9e-14 Score=129.80 Aligned_cols=100 Identities=21% Similarity=0.346 Sum_probs=85.0
Q ss_pred chhHHHHHHHHHHHHHHHHHhhccccccc---C-CC-hhhHHHHHHHHHHHHHhccCCCCccchhhhHHHHHhhc-CCCc
Q 039196 167 HCVSAFWVELLATSIIVFLAASLACEAQC---F-GN-LSGFVVGVAIGLAVLITGPVSGGSMNPARSLGPAIVSW-NFSD 240 (288)
Q Consensus 167 s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~---~-~~-~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~~g~al~~~-~~~~ 240 (288)
...+.++.|+++|++|+++.++....... . +. ..++.+|+++.+.+++++++||+|+|||+++++++.+. +|..
T Consensus 48 ~~~~~~laEfigT~llvf~g~g~~~~~~~~~~~~~~~~ial~~Glav~~~i~~~g~iSG~h~NPAVTla~~l~g~i~~~~ 127 (294)
T PTZ00016 48 PNVREYVAEFLGTFVLLFFGEGVVATTHTVGNNGDYLAITIGWGLGVTFGLLVSAGISGGHLNPAVTLGNAVFGKFPWKK 127 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcHHHHHHHHHHHHHHHHHhcccCcCccCHHHHHHHHHhccCCHHH
Confidence 45688999999999999998876543221 1 12 24678999999999999999999999999999999987 7999
Q ss_pred eeeeeecchHHHHHHHHHHHHhhcCC
Q 039196 241 IWIYIIGPTIGAVAGGFVYRFLRLRP 266 (288)
Q Consensus 241 ~wvy~v~p~~Ga~la~~~~~~~~~~~ 266 (288)
.|.||++|++|+++|+++.+.++++.
T Consensus 128 ~~~YiiaQ~lGa~~ga~ll~~~~~~~ 153 (294)
T PTZ00016 128 LPGYFVAQLLGAFVGAACVYGLYYGF 153 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999887653
No 24
>PRK05420 aquaporin Z; Provisional
Probab=99.49 E-value=5.4e-14 Score=124.03 Aligned_cols=97 Identities=25% Similarity=0.313 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhccccc----ccC-CCh-hhHHHHHHHHHHHHHhccCCCCccchhhhHHHHHhhc-CCCce
Q 039196 169 VSAFWVELLATSIIVFLAASLACEA----QCF-GNL-SGFVVGVAIGLAVLITGPVSGGSMNPARSLGPAIVSW-NFSDI 241 (288)
Q Consensus 169 ~~~~~~E~~~T~~Lv~~v~~~~~~~----~~~-~~~-~~~~ig~~v~~~~~~~~~~sG~~lNPA~~~g~al~~~-~~~~~ 241 (288)
.+.++.|+++|++|+++.+...... +.. +.+ .++.+|+++.+.+++++++||+|+|||+++++++.+. +|.+.
T Consensus 2 ~~~~laEfigT~~lv~~g~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSG~h~NPAvtl~~~~~~~i~~~~~ 81 (231)
T PRK05420 2 FKKLAAEFFGTFWLVFGGCGSAVLAAAFPELGIGFLGVALAFGLTVLTMAYAVGHISGGHFNPAVSVGLWAGGRFPAKEL 81 (231)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHhhcccCCCCCchHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHhCCCCHHHh
Confidence 5789999999999999887753221 111 122 3789999999999999999999999999999999976 79999
Q ss_pred eeeeecchHHHHHHHHHHHHhhcC
Q 039196 242 WIYIIGPTIGAVAGGFVYRFLRLR 265 (288)
Q Consensus 242 wvy~v~p~~Ga~la~~~~~~~~~~ 265 (288)
|+||++|++|+++|+.+.+.+++.
T Consensus 82 ~~Y~~aQ~lGa~~ga~l~~~~~~~ 105 (231)
T PRK05420 82 VPYIIAQVVGGIAAAAVLYLIASG 105 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999888877654
No 25
>PLN00027 aquaporin TIP; Provisional
Probab=99.48 E-value=8.2e-14 Score=124.43 Aligned_cols=98 Identities=22% Similarity=0.320 Sum_probs=82.3
Q ss_pred chhHHHHHHHHHHHHHHHHHhhccc------cccc--CCC--hhhHHHHHHHHHHHHHhccCCCCccchhhhHHHHHhhc
Q 039196 167 HCVSAFWVELLATSIIVFLAASLAC------EAQC--FGN--LSGFVVGVAIGLAVLITGPVSGGSMNPARSLGPAIVSW 236 (288)
Q Consensus 167 s~~~~~~~E~~~T~~Lv~~v~~~~~------~~~~--~~~--~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~~g~al~~~ 236 (288)
...+.++.|+++|++|+++.+.... +++. ... ..++.+|+++.+.+++.+++||+++|||+++++++.+.
T Consensus 18 ~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~l~~~l~~Gl~v~~~i~~~~~iSGah~NPAvtl~~~~~g~ 97 (252)
T PLN00027 18 DALKAALAEFISTLIFVFAGEGSGMAFNKLTDNGSTTPAGLVAAALAHAFALFVAVSVGANISGGHVNPAVTFGAFIGGN 97 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcchHHHHHHHHHHHHHHHHHHcccCccccChHHHHHHHHhCC
Confidence 4568899999999999999887631 1111 111 36899999999999999999999999999999998765
Q ss_pred -CCCceeeeeecchHHHHHHHHHHHHhhc
Q 039196 237 -NFSDIWIYIIGPTIGAVAGGFVYRFLRL 264 (288)
Q Consensus 237 -~~~~~wvy~v~p~~Ga~la~~~~~~~~~ 264 (288)
+|...|+||++|++|+++|+++++.+..
T Consensus 98 ~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~ 126 (252)
T PLN00027 98 ITLLRGILYWIAQLLGSVVACLLLKFSTG 126 (252)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6888999999999999999999988764
No 26
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=99.48 E-value=1.4e-13 Score=120.44 Aligned_cols=96 Identities=21% Similarity=0.318 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHhc-CCCC
Q 039196 50 LNPARMVIAELVGTFILMLCVCGIMASTVLTRGEVGLLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVG-HFPL 128 (288)
Q Consensus 50 ~~~~r~~~~EfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g-~~~~ 128 (288)
.+.++.++.|+++|++++++.+......+. .. .....++.+|+.+...++..+++||+|+|||++++.++.+ ..+|
T Consensus 119 ~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~--~~-~~~~~~~~iG~~v~~~~~~~g~~sG~~~NPAr~l~~~l~~~~~~~ 195 (216)
T TIGR00861 119 VSSGQAFFVEFIGTAILVLVIFATTDPRNR--VP-RGGFAPLAIGLLVFLIHLSMGPYTGTGMNPARSLGPALFAGLAGW 195 (216)
T ss_pred ccHHHHHHHHHHHHHHHHHHHheeecCCCC--CC-CCccHHHHHHHHHHHHHHhCCCCcccccCchhhhhHHHHhccccc
Confidence 467899999999999999998866432111 11 1114678899999999999999999999999999999986 5789
Q ss_pred CchhHHHHHHhHHHHHHHHH
Q 039196 129 SKVPFYIMAQTAGSVLGTYI 148 (288)
Q Consensus 129 ~~~~~yi~aQ~~Ga~~g~~~ 148 (288)
.+.|+||++|++|+++|+.+
T Consensus 196 ~~~~vy~vap~~Ga~~a~~~ 215 (216)
T TIGR00861 196 GNHWVYWVGPIIGAILGALV 215 (216)
T ss_pred cceeHHHHHHHHHHHHHHHh
Confidence 99999999999999999875
No 27
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.43 E-value=1.4e-13 Score=122.34 Aligned_cols=100 Identities=26% Similarity=0.402 Sum_probs=85.3
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcccccc----cCCCh--hhHHHHHHHHHHHHHhccCCCCccchhhhHHHHHhhc-CCC
Q 039196 167 HCVSAFWVELLATSIIVFLAASLACEAQ----CFGNL--SGFVVGVAIGLAVLITGPVSGGSMNPARSLGPAIVSW-NFS 239 (288)
Q Consensus 167 s~~~~~~~E~~~T~~Lv~~v~~~~~~~~----~~~~~--~~~~ig~~v~~~~~~~~~~sG~~lNPA~~~g~al~~~-~~~ 239 (288)
...|.+++||++|++|++..++.+.+.. ..+.. ..+.+|+++++.+++++.+||+|+|||++|+.+++++ +|.
T Consensus 30 ~l~Re~LAEFlGT~vL~~~G~g~v~Q~vls~g~~g~~~~vnlgwg~av~~gVyvag~iSGgHlNPAVS~a~~~~g~~p~~ 109 (316)
T KOG0224|consen 30 ELLREFLAEFLGTFVLVVFGLGSVAQAVLSGGTGGSFIGVNLGWGFAVMMGVYVAGRISGGHLNPAVSLAMCILGRLPWK 109 (316)
T ss_pred HHHHHHHHHHHhHHHHHhhccceeEEEEeccCCCCceEEEEehHhHHHHHHHHhhccccccccCHHHHHHHHHhcCCChh
Confidence 4678999999999999998887765433 11222 3589999999999999999999999999999999987 799
Q ss_pred ceeeeeecchHHHHHHHHHHHHhhcCC
Q 039196 240 DIWIYIIGPTIGAVAGGFVYRFLRLRP 266 (288)
Q Consensus 240 ~~wvy~v~p~~Ga~la~~~~~~~~~~~ 266 (288)
++.+|.++|++||++|+.....+|.+.
T Consensus 110 k~p~Y~~aQ~iGAF~gaa~~y~~y~d~ 136 (316)
T KOG0224|consen 110 KFPVYVLAQFIGAFLGAATVYGLYYDA 136 (316)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888777643
No 28
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.42 E-value=2.5e-13 Score=119.46 Aligned_cols=102 Identities=24% Similarity=0.296 Sum_probs=88.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHhcCCC
Q 039196 48 IDLNPARMVIAELVGTFILMLCVCGIMASTVLTRGEVGLLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFP 127 (288)
Q Consensus 48 ~~~~~~r~~~~EfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~ 127 (288)
...+.++.++.|++.||.|+|+.++.....+. + ...++.+|+.+.+.+++.+++||+++|||++++.++..+.
T Consensus 127 ~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~~~-----~-~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~~- 199 (238)
T KOG0223|consen 127 PGLSTGQGLVIEIILTFILVFTVFATATDPRR-----S-ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYGS- 199 (238)
T ss_pred CCCCcchhHHHHHHHHHHHhheeEEEeecCCC-----c-ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhcC-
Confidence 34567899999999999999998763322221 1 4567889999999999999999999999999999999885
Q ss_pred CCchhHHHHHHhHHHHHHHHHHHHHhcCc
Q 039196 128 LSKVPFYIMAQTAGSVLGTYIGILVYGIK 156 (288)
Q Consensus 128 ~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~ 156 (288)
|..+|+||++|++|+++++++.+.++.+.
T Consensus 200 w~~hwiYwvgP~~Ga~~a~~~y~~v~~~~ 228 (238)
T KOG0223|consen 200 WDDHWIYWVGPLLGAILAALIYRLVFIPD 228 (238)
T ss_pred CCcEEEEEhhHHHHHHHHHHHHHHhccCc
Confidence 99999999999999999999999988765
No 29
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=99.36 E-value=7.5e-13 Score=116.18 Aligned_cols=104 Identities=21% Similarity=0.343 Sum_probs=87.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccccc-------cCCCh-hhHHHHHHHHHHHHHhccCCCCccchhhhHHHHHhhc-CC
Q 039196 168 CVSAFWVELLATSIIVFLAASLACEAQ-------CFGNL-SGFVVGVAIGLAVLITGPVSGGSMNPARSLGPAIVSW-NF 238 (288)
Q Consensus 168 ~~~~~~~E~~~T~~Lv~~v~~~~~~~~-------~~~~~-~~~~ig~~v~~~~~~~~~~sG~~lNPA~~~g~al~~~-~~ 238 (288)
..+.++.||++|++|++...+...... ..+.. ..+.+|+.+.+.+++.+++||+|+|||.+++.++.++ +|
T Consensus 4 ~~~~~~aEflGT~~Li~~G~G~~a~~~l~~~~~~~~~~~~i~~~wGl~V~~~iy~~g~iSGaHlNPAVTi~la~~g~fp~ 83 (241)
T COG0580 4 LTKKLLAEFLGTFLLIFFGNGSVAAVALKGSKALGGGWLGIALAWGLGVLVAIYAFGGISGAHLNPAVTIALAVRGRFPW 83 (241)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHhccccccccceeehhHHHHHHHHHHHHhccCcCccccChHHHHHHHHhCCCCH
Confidence 456789999999999998776643211 11222 5689999999999999999999999999999999986 79
Q ss_pred CceeeeeecchHHHHHHHHHHHHhhcCCCCCCC
Q 039196 239 SDIWIYIIGPTIGAVAGGFVYRFLRLRPRACSP 271 (288)
Q Consensus 239 ~~~wvy~v~p~~Ga~la~~~~~~~~~~~~~~~~ 271 (288)
.+...||++|++|+++|+.+...+++++..+.+
T Consensus 84 ~~v~~YivAQ~lGA~~ga~l~~~~~~~~~~~~~ 116 (241)
T COG0580 84 RKVLPYIVAQVLGAFAGAALLYLLYYGKILETE 116 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhc
Confidence 999999999999999999999999887665554
No 30
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=99.11 E-value=5.5e-10 Score=98.26 Aligned_cols=97 Identities=25% Similarity=0.384 Sum_probs=78.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHhcCCCC
Q 039196 49 DLNPARMVIAELVGTFILMLCVCGIMASTVLTRGEVGLLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFPL 128 (288)
Q Consensus 49 ~~~~~r~~~~EfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~ 128 (288)
..+.++.++.|+++|++|+++........+.. ..+. ..++.+|+.+....+..+..||+.+|||++++..+.... |
T Consensus 131 ~~s~~~~~~~E~~~t~il~~~i~~~~~~~~~~--~~~~-~~p~~ig~~v~~~~~~~~~~tG~~~NPAr~~g~~l~~~~-~ 206 (227)
T PF00230_consen 131 GISLGQAFFSEFIGTFILVLVILAVADDKRKF--PLGP-LAPLAIGLTVGALVLAGGPYTGASLNPARALGPALFSGI-W 206 (227)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHTSTTSSS--TSSG-GHHHHHHHHHHHHHHHHHHHHST-SSHHHHHHHHHHHTH-H
T ss_pred cchhhhhhhhhhhhhhHHHhhhhhhccccccc--cccc-ccceeEEEEEeecccccccccccccCchhhcCceeeccc-C
Confidence 45678999999999999999887654332221 1122 346778999999999999999999999999999998776 9
Q ss_pred CchhHHHHHHhHHHHHHHHHH
Q 039196 129 SKVPFYIMAQTAGSVLGTYIG 149 (288)
Q Consensus 129 ~~~~~yi~aQ~~Ga~~g~~~~ 149 (288)
...|+||+++++|+++|++++
T Consensus 207 ~~~wvy~~~P~~Ga~~a~~~Y 227 (227)
T PF00230_consen 207 DYFWVYWVGPFIGAILAALLY 227 (227)
T ss_dssp TTTTHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEehHHHHHHHHHhhC
Confidence 999999999999999998763
No 31
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism]
Probab=95.07 E-value=0.14 Score=45.93 Aligned_cols=178 Identities=16% Similarity=0.143 Sum_probs=91.4
Q ss_pred chhHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHhcCCCCCchhHHHHHHhHHHHHHHHHHHHHhcCcC-ceeecc
Q 039196 85 GLLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVYGIKS-NLMITR 163 (288)
Q Consensus 85 ~~~~~~l~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~-~~~~~~ 163 (288)
..+..++++++++...+++-+..-= -|-.........++++|++.+--|+-=.+|=++|++++..++.-.. +.....
T Consensus 63 ~~lvg~~~F~~GLilVv~~g~ELfT--~n~m~~t~~~~~k~Is~~~ll~~w~~v~lgNliGa~~~a~l~~~~g~~~~~~~ 140 (265)
T COG2116 63 AKLVGGLVFSLGLILVVIAGSELFT--SNTMLLTVGVLSKKISWGQLLRNWLVVYLGNLIGALFVALLFHLSGFNLTANG 140 (265)
T ss_pred HHHHHHHHHHHHHHHhhhhCccccc--cchhHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence 4556677777777777766555321 1433444456678899988887777767777777776666552111 011111
Q ss_pred C-------------CcchhHHHHHHHHHHHHHHHHHhhcccccccCCChhhHHHHHHHHHHHHHhccCCCCccchhhhHH
Q 039196 164 P-------------AQHCVSAFWVELLATSIIVFLAASLACEAQCFGNLSGFVVGVAIGLAVLITGPVSGGSMNPARSLG 230 (288)
Q Consensus 164 p-------------~~s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~~g 230 (288)
+ ..+..+.|+--.++-++.++.+...-..+.... .-+.+-+-+++.+. ..+.=...|-..--
T Consensus 141 ~~~~~~~~~a~~K~~~t~~~~F~~GI~cN~lVclAvwm~~~~k~~~~--K~~~m~~pv~~Fv~--~GfeH~VANm~~i~- 215 (265)
T COG2116 141 QWGLFVLGVAEHKLHHTFLEAFAKGILCNWLVCLAVWMSYSAKDGAA--KIFAIILPVMLFVA--SGFEHSVANMFMIP- 215 (265)
T ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHhcccchhh--HHHHHHHHHHHHHH--cCCceeeehHHHHH-
Confidence 1 024466677777778888887776533232212 22333333333333 33333345533221
Q ss_pred HHHhhc---CCCc-eeee----eecchHH-HHHHHHHHHHhhcCCCCC
Q 039196 231 PAIVSW---NFSD-IWIY----IIGPTIG-AVAGGFVYRFLRLRPRAC 269 (288)
Q Consensus 231 ~al~~~---~~~~-~wvy----~v~p~~G-a~la~~~~~~~~~~~~~~ 269 (288)
+..... .|.+ .|-- .+|-++| +++-++.|.++++++.+.
T Consensus 216 ~~~~~~~~~~~~~fi~~Nlipv~lGNivGG~v~vgl~Y~~~~~~~~~~ 263 (265)
T COG2116 216 WAAVFSGALTWADFILKNLIPVTLGNIVGGAVFVGLMYWYLYRKQNRY 263 (265)
T ss_pred HHHHcCChhhhHHHHHHHHHHHHHhchhcchhhhhHHHHHhccccccc
Confidence 122221 2433 2222 2344443 456667777777655443
No 32
>PRK11562 nitrite transporter NirC; Provisional
Probab=94.03 E-value=1.4 Score=39.79 Aligned_cols=99 Identities=12% Similarity=0.182 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHhhc-ccCCCCChHHHHHHHHhcCCCCCchhHHHHHHhHHHHHHHHHHHHHhcCcCc-eee----
Q 039196 88 EYAATAGLTIIVLVYSIGP-ISGAHVNPAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVYGIKSN-LMI---- 161 (288)
Q Consensus 88 ~~~l~~g~~~~~~i~~~~~-iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~-~~~---- 161 (288)
..++.+++++...++.-+. .+| |=.......+.|+.+|++.+-.|.-=++|=++|+++.-.+...... ...
T Consensus 60 i~g~~F~~GLilVi~~G~eLFTg---n~~~~~~~~~~~~~s~~~~lr~w~iv~~GNliGa~~~A~l~~~~~~~~~~~~~~ 136 (268)
T PRK11562 60 VMGATFGIALTLVIIAGSELFTG---HTMFLTFGVKAGTISHGQMWAILPQTWLGNLVGSVFVALLYSWGGGSLLPVDTS 136 (268)
T ss_pred HHHHHHHHHHHHHHHhCcccccc---chHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhH
Confidence 3455566666666554433 233 5444445677788898888777766666666666665554322100 000
Q ss_pred -------ccCCcchhHHHHHHHHHHHHHHHHHhhc
Q 039196 162 -------TRPAQHCVSAFWVELLATSIIVFLAASL 189 (288)
Q Consensus 162 -------~~p~~s~~~~~~~E~~~T~~Lv~~v~~~ 189 (288)
..-..+..+.|+-=.++-++.++.+...
T Consensus 137 ~~~~ia~~K~~~~~~~~f~~gI~CNwLVclavw~~ 171 (268)
T PRK11562 137 IVHSVALAKTTAPAMVLFFKGALCNWLVCLAIWMA 171 (268)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001355677777777888888777665
No 33
>PRK10805 formate transporter; Provisional
Probab=90.12 E-value=13 Score=34.01 Aligned_cols=99 Identities=12% Similarity=0.168 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHHHHHhhc-ccCCCCChHHHHHHHHhcCCCCCchhHHHHHHhHHHHHHHHHHHHHhcCcCceee----
Q 039196 87 LEYAATAGLTIIVLVYSIGP-ISGAHVNPAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVYGIKSNLMI---- 161 (288)
Q Consensus 87 ~~~~l~~g~~~~~~i~~~~~-iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~---- 161 (288)
+..++.+.+++...+..-+. .+| |-..++ ..+.+|.+|.+..-.|.-=++|=++|+++.-.+.........
T Consensus 69 ll~~~~F~vGlilIvl~g~eLFTg---n~l~~~-~~~~~~~~~~~~lr~w~iv~~GNliGal~~a~l~~~s~~~~~~~~~ 144 (285)
T PRK10805 69 LVGGICFSLGLILCVVCGADLFTS---TVLIVV-AKASGRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANGQ 144 (285)
T ss_pred HHHHHHHHHHHHHHHHhCcccchh---hHHHHH-HHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCccH
Confidence 33455566666666555444 344 655554 467788898887755554455555555544333221100000
Q ss_pred ----------ccCCcchhHHHHHHHHHHHHHHHHHhhc
Q 039196 162 ----------TRPAQHCVSAFWVELLATSIIVFLAASL 189 (288)
Q Consensus 162 ----------~~p~~s~~~~~~~E~~~T~~Lv~~v~~~ 189 (288)
..-+.++.+.|+-=.++.++.++.+...
T Consensus 145 ~~~~~~~~a~~K~~~~~~~~f~~gI~CN~lVclaV~~~ 182 (285)
T PRK10805 145 WGLNVLQTADHKVHHTFIEAVCLGILANLMVCLAVWMS 182 (285)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001356677777778888888887754
No 34
>PRK09713 focB putative formate transporter; Provisional
Probab=89.46 E-value=10 Score=34.54 Aligned_cols=99 Identities=8% Similarity=0.012 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHHHhcCCCCCchhHHHHHHhHHHHHHHHHHHHHhcCcCceee-----
Q 039196 88 EYAATAGLTIIVLVYSIGPI-SGAHVNPAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVYGIKSNLMI----- 161 (288)
Q Consensus 88 ~~~l~~g~~~~~~i~~~~~i-SGah~NPavTla~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~----- 161 (288)
..++.+.+++...++.-+.. +| |=.. +.....++.+|++..-.|.-=++|=++|+++.-.+.........
T Consensus 69 l~g~~F~vGLilIv~~g~ELfTg---N~~~-~~~~~~~~i~~~~~l~~w~iv~~GNlvGal~~A~l~~~s~~~~~~~~~~ 144 (282)
T PRK09713 69 VGGLCFTLGFILLAVCGTSLFTS---SVMT-VMAKSRGVISWRTWLINALLVACGNLAGIACFSLLIWFSGLVMSENAMW 144 (282)
T ss_pred HHHHHHHHHHHHHHHhCccccHH---HHHH-HHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhH
Confidence 34555666666666554432 33 3222 23356788888888754444444444444444333321111100
Q ss_pred ---------ccCCcchhHHHHHHHHHHHHHHHHHhhcc
Q 039196 162 ---------TRPAQHCVSAFWVELLATSIIVFLAASLA 190 (288)
Q Consensus 162 ---------~~p~~s~~~~~~~E~~~T~~Lv~~v~~~~ 190 (288)
..-..++.+.|+--.++-++.++.+....
T Consensus 145 ~~~~~~ia~~K~~~~~~~~F~~gI~CN~lVclaV~~~~ 182 (282)
T PRK09713 145 GVAVLHCAEGKMHHTFTESVSLGIMCNLMVCLALWMSY 182 (282)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00114567778888888888888887653
No 35
>TIGR00790 fnt formate/nitrite transporter. symport. HCO2 - efflux may be driven by the membrane potential by a uniport mechanism or by H+ antiport.
Probab=85.16 E-value=17 Score=32.19 Aligned_cols=98 Identities=13% Similarity=0.233 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHhhc-ccCCCCChHHHHHHHHhcCCCCCchhHHHHHHhHHHHHHHHHHHHHhcCcCceee------
Q 039196 89 YAATAGLTIIVLVYSIGP-ISGAHVNPAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVYGIKSNLMI------ 161 (288)
Q Consensus 89 ~~l~~g~~~~~~i~~~~~-iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~------ 161 (288)
.++.+.+++...++.-+. .+| |-......++.|+.+|.+.+-.|.-=.+|=++|+++.-.+.........
T Consensus 46 ~~~~F~~gl~~Iv~~g~eLfTg---n~~~~~~~~~~~~~~~~~~l~~w~~~~~gNlvG~~~~a~l~~~~~~~~~~~~~~~ 122 (239)
T TIGR00790 46 GGATFPIGLILVVIAGSDLFTG---NTLFVTMALLRGKISWGDLLINWVVSWLGNLVGALFVAYLFSYLGGILTANGPWG 122 (239)
T ss_pred HHHHHHHHHheeeeeCcccccc---chHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCccHHH
Confidence 344455554444433222 222 5444444577888998888877776666777776666554432211000
Q ss_pred --------ccCCcchhHHHHHHHHHHHHHHHHHhhc
Q 039196 162 --------TRPAQHCVSAFWVELLATSIIVFLAASL 189 (288)
Q Consensus 162 --------~~p~~s~~~~~~~E~~~T~~Lv~~v~~~ 189 (288)
..-..+..+.++-=+++.+++.+.+...
T Consensus 123 ~~~~~~a~~K~~~~~~~~f~~gilcn~lV~lav~~~ 158 (239)
T TIGR00790 123 VGSLAIAEHKAHHTFVEAFFLGILCNWLVCLAVWMS 158 (239)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011356666777777778887777653
No 36
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=76.56 E-value=48 Score=33.43 Aligned_cols=114 Identities=18% Similarity=0.212 Sum_probs=66.8
Q ss_pred HhcCCCCCchhHHHHHHhHHHHHHHHHHHHHhcCcCceeeccCCcchhHHHHHHHHHHHHHHHHHhhcccccccCCChhh
Q 039196 122 VVGHFPLSKVPFYIMAQTAGSVLGTYIGILVYGIKSNLMITRPAQHCVSAFWVELLATSIIVFLAASLACEAQCFGNLSG 201 (288)
Q Consensus 122 l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~p~~s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~~~~~~~ 201 (288)
....-|.....-++.+.++|+.+|.+....++|.. + . +.++...+...+++..... ..+....
T Consensus 380 a~~~~P~~~~~~~~~G~l~~~~~a~~~~~~vlP~~----------~---~-f~~L~l~l~~~l~~~~~~~---~~p~~~~ 442 (650)
T PF04632_consen 380 ATLDNPAPALRLFLIGALLGAVLAFLYLFFVLPHL----------D---G-FPLLALVLAPFLFLGGLLM---ARPRTAY 442 (650)
T ss_pred cCCcChHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----------C---c-HHHHHHHHHHHHHHHHHHH---cCchHHH
Confidence 33444777888899999999999999988888765 1 1 1222222211111111111 1233444
Q ss_pred HHHHHHHHHHHHHhccCCCCccchhhhHHHHHhhcCCCceeeeeecchHHHHHHHHHHHHhhcCC
Q 039196 202 FVVGVAIGLAVLITGPVSGGSMNPARSLGPAIVSWNFSDIWIYIIGPTIGAVAGGFVYRFLRLRP 266 (288)
Q Consensus 202 ~~ig~~v~~~~~~~~~~sG~~lNPA~~~g~al~~~~~~~~wvy~v~p~~Ga~la~~~~~~~~~~~ 266 (288)
...++.+...... ++......|++.-+-.. ++.++|.+++.+.++++.+..
T Consensus 443 ~g~~~~v~f~~~~-~~~n~~~~d~~~f~n~~-------------la~l~G~~~a~l~~~li~p~~ 493 (650)
T PF04632_consen 443 IGLGFAVFFLLLL-GPGNPYSYDFATFLNRA-------------LAILLGIVIAALVFRLIRPFS 493 (650)
T ss_pred HHHHHHHHHHHHh-cCCCCCCCCHHHHHHHH-------------HHHHHHHHHHHHHHHHHCCCC
Confidence 5555555543333 33345566666544333 477899999999999997754
No 37
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=70.45 E-value=85 Score=28.52 Aligned_cols=47 Identities=19% Similarity=0.142 Sum_probs=27.2
Q ss_pred CCC-ChHHHHHHHHhcC-----CCCCch------hHHHHHHhHHHHHHHHHHHHHhcCc
Q 039196 110 AHV-NPAVTIAFAVVGH-----FPLSKV------PFYIMAQTAGSVLGTYIGILVYGIK 156 (288)
Q Consensus 110 ah~-NPavTla~~l~g~-----~~~~~~------~~yi~aQ~~Ga~~g~~~~~~~~~~~ 156 (288)
-+. ||+..+..++..+ ++..-. ..=++.|.+-+.++.....+..+..
T Consensus 109 ~~~~sp~l~~~YA~~EG~flG~iS~~f~~~~~~~~pGIv~qAvl~T~~vf~~ml~lYk~ 167 (274)
T PF12811_consen 109 RKVWSPALAPIYAVLEGVFLGGISAVFENIYYSRYPGIVFQAVLGTFGVFAVMLALYKT 167 (274)
T ss_pred CccCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 355 8999888877643 232111 1227778777776666555544443
No 38
>PF01226 Form_Nir_trans: Formate/nitrite transporter; InterPro: IPR000292 Proteins in this entry belong to the Formate-Nitrite Transporter (FNT) family (TC 2.A.44). The prokaryotic proteins of the FNT family probably function in the transport of the structurally related compounds, formate and nitrite. The homologous yeast protein may function as a short chain aliphatic carboxylate H+ symporter, transporting formate, acetate and propionate, and functioning primarily as an acetate uptake permease.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3Q7K_H 3KLY_E 3KLZ_A 3TDX_C 3TE2_B 3TDS_B 3TDR_E 3TDO_C 3TE1_B 3TDP_C ....
Probab=60.51 E-value=1.1e+02 Score=27.19 Aligned_cols=101 Identities=12% Similarity=0.152 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHHHHHhhc-ccCCCCChHHHHHHHHhcCCCCCchhHHHHHHhHHHHHHHHHHHHHhcCcCcee-----
Q 039196 87 LEYAATAGLTIIVLVYSIGP-ISGAHVNPAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVYGIKSNLM----- 160 (288)
Q Consensus 87 ~~~~l~~g~~~~~~i~~~~~-iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~----- 160 (288)
+..++.+++++...+..-+. .+| |-.+....++.++.+|++.+--|.-=.+|=++|+++.-.+........
T Consensus 58 l~~g~~F~~Gl~lIv~~g~eLfTg---n~~~~~~~~~~~~~~~~~~l~~w~~v~~gNliG~~~~a~l~~~~~~~~~~~~~ 134 (250)
T PF01226_consen 58 LVGGLVFPIGLVLIVFLGGELFTG---NMMVMTLALLNKRISWKKLLRNWGIVYLGNLIGALLFAYLFAFSGGFMSSPAM 134 (250)
T ss_dssp HHHHHHHTHHHHHHHHHT---TTT---TCHHHHHHHCTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTGGGTTTHH
T ss_pred HHHHHHHHHHHHHHHHhcchhccc---chHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHH
Confidence 34566666666666655444 333 666666677888899988776666666666666666555443321111
Q ss_pred --------eccCCcchhHHHHHHHHHHHHHHHHHhhcc
Q 039196 161 --------ITRPAQHCVSAFWVELLATSIIVFLAASLA 190 (288)
Q Consensus 161 --------~~~p~~s~~~~~~~E~~~T~~Lv~~v~~~~ 190 (288)
...-+.++++.|+-=.++.++.++.+....
T Consensus 135 ~~~~~~~a~~K~~~~~~~~f~~gI~cN~lVclav~~~~ 172 (250)
T PF01226_consen 135 GEYLISVAEHKVSHTFWELFFRGILCNWLVCLAVWLAF 172 (250)
T ss_dssp HHHHHHHHHCCSSS-HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011124667777788888888888887653
No 39
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=49.28 E-value=3.1e+02 Score=28.15 Aligned_cols=124 Identities=14% Similarity=0.031 Sum_probs=70.6
Q ss_pred CCCChHHHHHHHHhcCCCCCchhHHHHHHhHHHHHHHHHHHHHhcCcCceeeccCCcchhHHHHHHHHHHHHHHHHHhhc
Q 039196 110 AHVNPAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVYGIKSNLMITRPAQHCVSAFWVELLATSIIVFLAASL 189 (288)
Q Consensus 110 ah~NPavTla~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~p~~s~~~~~~~E~~~T~~Lv~~v~~~ 189 (288)
+-+..||..+++....-|..-..-+..++++|..+|.+....++|... + .-.++.=.++.+++....+.
T Consensus 381 a~~~aAV~~~LfA~~~nP~~~~~~fl~Gtl~a~~~a~l~~f~vLP~i~---------~-~f~lL~laLap~~~~~g~~~- 449 (652)
T PRK10631 381 AMVMIAVVTSLAMRLPNPRMVAIDFLYGTLAALPLGALYFMVIIPNTQ---------Q-SMLLLCISLGVLGFFIGIEV- 449 (652)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------c-cHHHHHHHHHHHHHHHHHHh-
Confidence 556666666666666656655667888899999999998888877640 0 00112222222222221111
Q ss_pred ccccccCCChhhHHHHHHHHHHHHHhccCCCCccchhhhHHHHHhhcCCCceeeeeecchHHHHHHHHHHHHhhcC
Q 039196 190 ACEAQCFGNLSGFVVGVAIGLAVLITGPVSGGSMNPARSLGPAIVSWNFSDIWIYIIGPTIGAVAGGFVYRFLRLR 265 (288)
Q Consensus 190 ~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~~g~al~~~~~~~~wvy~v~p~~Ga~la~~~~~~~~~~ 265 (288)
++ . ....+|+.+..+.+. +...-...||+.-+-.+ ++.++|.+++.+.+.++.+.
T Consensus 450 ---~~--~--~~~~lg~~i~f~~~l-~l~n~~~~d~~~FlN~a-------------lA~v~Gi~~A~l~f~lirp~ 504 (652)
T PRK10631 450 ---QK--R--RLGSLGALASTINIL-VLDNPMTFHFSQFLDSA-------------LGQIVGCFLALIVILLVRDN 504 (652)
T ss_pred ---cc--c--HHHHHHHHHHHHHHh-ccCCCCCcCHHHHHHHH-------------HHHHHHHHHHHHHHHHhCCC
Confidence 11 1 122456666554333 33334556666544443 47889999999999777654
No 40
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=46.76 E-value=3.5e+02 Score=27.98 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=22.4
Q ss_pred CCchhHHHHHHhHHHHHHHHHHHHHhcC
Q 039196 128 LSKVPFYIMAQTAGSVLGTYIGILVYGI 155 (288)
Q Consensus 128 ~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~ 155 (288)
..|....+++.++|+++|..+...+.+.
T Consensus 395 ~sRa~~RiiGTliGallA~ll~v~l~P~ 422 (683)
T PRK11427 395 YQKMVLRFGGAFCGAILALLFTLLVMPW 422 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4577788899999999998888777653
No 41
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=39.94 E-value=2e+02 Score=23.20 Aligned_cols=64 Identities=17% Similarity=0.348 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccccccCCChhhHHHHHHHHHHHHHhc-----cCCCCccchhhhHHHHHh
Q 039196 168 CVSAFWVELLATSIIVFLAASLACEAQCFGNLSGFVVGVAIGLAVLITG-----PVSGGSMNPARSLGPAIV 234 (288)
Q Consensus 168 ~~~~~~~E~~~T~~Lv~~v~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~-----~~sG~~lNPA~~~g~al~ 234 (288)
...+++.-++.+++.+..++....+. .....+.+++.+.+..+..| +.+|...=-..|++.+..
T Consensus 3 hv~aLliKf~~~~ivl~i~L~~~~~~---sf~~~l~~sl~ltvvaY~iGDl~ILPr~gN~~AtiaD~~La~~ 71 (136)
T PF10710_consen 3 HVKALLIKFVMTIIVLYIILGLFFGA---SFGDILLISLVLTVVAYLIGDLFILPRTGNIVATIADFGLAFL 71 (136)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHheeeCCCChhHHHHHHHHHHH
Confidence 34677888888888877776543222 23355777777777777555 345554444555665554
No 42
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=36.54 E-value=10 Score=29.59 Aligned_cols=21 Identities=24% Similarity=0.148 Sum_probs=17.8
Q ss_pred cccCCCCChHHHHHHHHhcCC
Q 039196 106 PISGAHVNPAVTIAFAVVGHF 126 (288)
Q Consensus 106 ~iSGah~NPavTla~~l~g~~ 126 (288)
.-|+||+||.+.++-.|..+-
T Consensus 6 ~Gt~Ghv~P~lala~~L~~rG 26 (139)
T PF03033_consen 6 GGTRGHVYPFLALARALRRRG 26 (139)
T ss_dssp ESSHHHHHHHHHHHHHHHHTT
T ss_pred cCChhHHHHHHHHHHHHhccC
Confidence 347899999999999998764
No 43
>KOG3030 consensus Lipid phosphate phosphatase and related enzymes of the PAP2 family [Lipid transport and metabolism]
Probab=32.57 E-value=88 Score=29.04 Aligned_cols=47 Identities=23% Similarity=0.519 Sum_probs=36.9
Q ss_pred CCccchhhhHHHHHhhc--------CCCceee-eeecchHHHHHHHHHHHHhhcCC
Q 039196 220 GGSMNPARSLGPAIVSW--------NFSDIWI-YIIGPTIGAVAGGFVYRFLRLRP 266 (288)
Q Consensus 220 G~~lNPA~~~g~al~~~--------~~~~~wv-y~v~p~~Ga~la~~~~~~~~~~~ 266 (288)
+-.+.|-..|++.+... ++++||. -++|-++|+++|.++++.+....
T Consensus 210 ~rllr~~l~f~~l~~A~~v~lSRV~DYkHHwsDV~aG~liG~~~A~~~~~~v~~~f 265 (317)
T KOG3030|consen 210 GRLLRPLLQFLPLMLALLVGLSRVSDYKHHWSDVLAGALIGAFVAYFLYRYVFPNF 265 (317)
T ss_pred chhHHHHHHHHHHHHHHHHeeehhcccccccHHHHHHHHHHHHHHHHHHhhhcchh
Confidence 55678888888766542 6788888 56889999999999999887643
No 44
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=29.63 E-value=12 Score=34.90 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=18.8
Q ss_pred HhhcccCCCCChHHHHHHHHhc
Q 039196 103 SIGPISGAHVNPAVTIAFAVVG 124 (288)
Q Consensus 103 ~~~~iSGah~NPavTla~~l~g 124 (288)
+.++-+|||+.||+.++-.+..
T Consensus 6 ~~~GGTGGHi~Pala~a~~l~~ 27 (352)
T PRK12446 6 FTGGGSAGHVTPNLAIIPYLKE 27 (352)
T ss_pred EEcCCcHHHHHHHHHHHHHHHh
Confidence 4566789999999999999875
No 45
>PRK15049 L-asparagine permease; Provisional
Probab=26.87 E-value=2.8e+02 Score=27.15 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 039196 50 LNPARMVIAELVGTFILMLCVCG 72 (288)
Q Consensus 50 ~~~~r~~~~EfigT~~lvf~~~~ 72 (288)
++..-..+.-.+||-+++-.+..
T Consensus 33 ~~~~~i~~G~~IGsGiF~~~g~~ 55 (499)
T PRK15049 33 RQVQMIAIGGAIGTGLFLGAGAR 55 (499)
T ss_pred hHhHHHhhhccccchHHHhhHHH
Confidence 34445667788889888777644
No 46
>COG1289 Predicted membrane protein [Function unknown]
Probab=25.60 E-value=6.6e+02 Score=25.68 Aligned_cols=30 Identities=17% Similarity=0.250 Sum_probs=18.8
Q ss_pred CCCchhHHHHHHhHHHHHHHHHHHHHhcCc
Q 039196 127 PLSKVPFYIMAQTAGSVLGTYIGILVYGIK 156 (288)
Q Consensus 127 ~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~ 156 (288)
+..+..-++.+=++|..+|.++.+...+..
T Consensus 399 t~~r~~~ri~GTllg~~~g~~~l~~~~p~~ 428 (674)
T COG1289 399 TRQRARQRILGTLLGLLLGLLVLLLLLPLI 428 (674)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 445556666666777777777766655443
No 47
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=23.86 E-value=7.6e+02 Score=24.92 Aligned_cols=20 Identities=20% Similarity=0.180 Sum_probs=9.3
Q ss_pred chHHHHHHHHHHHHhhcCCC
Q 039196 248 PTIGAVAGGFVYRFLRLRPR 267 (288)
Q Consensus 248 p~~Ga~la~~~~~~~~~~~~ 267 (288)
.+..+++.+.+.+++.++++
T Consensus 575 ~~~~~~~iG~~~~~~~~~~~ 594 (624)
T PF03169_consen 575 NYTSAIFIGGLFQFYWRRRY 594 (624)
T ss_pred HHHHHHHHHHHHHHHhhhcc
Confidence 33444455555555544433
No 48
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=22.26 E-value=3.8e+02 Score=20.85 Aligned_cols=29 Identities=10% Similarity=-0.022 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 039196 50 LNPARMVIAELVGTFILMLCVCGIMASTV 78 (288)
Q Consensus 50 ~~~~r~~~~EfigT~~lvf~~~~~~~~~~ 78 (288)
....|.++.=|+.+.+|..+....+....
T Consensus 22 ~~~~k~yviGFiLSiiLT~I~F~~V~~~~ 50 (110)
T TIGR02908 22 AEEMKKQIVTFALMIFLTLIAFFAVMLDE 50 (110)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34567888999999999998888776543
No 49
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=21.07 E-value=3.7e+02 Score=22.14 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=18.7
Q ss_pred CCchhHHHHHHhHHHHHHHHHHHHHh
Q 039196 128 LSKVPFYIMAQTAGSVLGTYIGILVY 153 (288)
Q Consensus 128 ~~~~~~yi~aQ~~Ga~~g~~~~~~~~ 153 (288)
+...+.+..+-+.|+++|..+.+.+.
T Consensus 123 ~~~v~~F~~St~~Ga~ig~~~l~~L~ 148 (150)
T PF09512_consen 123 FFFVPPFLISTLIGAIIGYILLKALK 148 (150)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566677788888888887776654
Done!