BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039198
(351 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 116 bits (290), Expect = 2e-26, Method: Composition-based stats.
Identities = 54/109 (49%), Positives = 78/109 (71%), Gaps = 3/109 (2%)
Query: 10 INNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPK-LAGLNRCGKSCRLRWTNYLRPDIKR 68
I ++ KGPWT EEDQK+I+ ++K+G W + K L G R GK CR RW N+L P++K+
Sbjct: 2 IPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG--RLGKQCRERWHNHLNPEVKK 59
Query: 69 GKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKL 117
++EEE+++I H VLGN+W+ IA LPGRTDN +KN WN+ +K+K+
Sbjct: 60 SSWTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 75/104 (72%), Gaps = 3/104 (2%)
Query: 15 KGPWTPEEDQKLIDYIRKHGHGSWRALPK-LAGLNRCGKSCRLRWTNYLRPDIKRGKFSE 73
KGPWT EEDQ++I++++K+G W + K L G R GK CR RW N+L P++K+ ++E
Sbjct: 27 KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG--RIGKQCRERWHNHLNPEVKKTSWTE 84
Query: 74 EEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKL 117
EE+++I H LGN+W+ IA LPGRTDN +KN WN+ +++K+
Sbjct: 85 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 110 bits (274), Expect = 1e-24, Method: Composition-based stats.
Identities = 51/104 (49%), Positives = 73/104 (70%), Gaps = 3/104 (2%)
Query: 15 KGPWTPEEDQKLIDYIRKHGHGSWRALPK-LAGLNRCGKSCRLRWTNYLRPDIKRGKFSE 73
KGPWT EEDQ++I ++K+G W + K L G R GK CR RW N+L P++K+ ++E
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 74 EEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKL 117
EE+++I H LGN+W+ IA LPGRTDN IKN WN+ +++K+
Sbjct: 62 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 109 bits (273), Expect = 2e-24, Method: Composition-based stats.
Identities = 51/104 (49%), Positives = 73/104 (70%), Gaps = 3/104 (2%)
Query: 15 KGPWTPEEDQKLIDYIRKHGHGSWRALPK-LAGLNRCGKSCRLRWTNYLRPDIKRGKFSE 73
KGPWT EEDQ++I ++K+G W + K L G R GK CR RW N+L P++K+ ++E
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 74 EEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKL 117
EE+++I H LGN+W+ IA LPGRTDN IKN WN+ +++K+
Sbjct: 62 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 73/104 (70%), Gaps = 3/104 (2%)
Query: 15 KGPWTPEEDQKLIDYIRKHGHGSWRALPK-LAGLNRCGKSCRLRWTNYLRPDIKRGKFSE 73
KGPWT EEDQ++I ++K+G W + K L G R GK CR RW N+L P++K+ ++E
Sbjct: 58 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTSWTE 115
Query: 74 EEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKL 117
EE+++I H LGN+W+ IA LPGRTDN IKN WN+ +++K+
Sbjct: 116 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 66/105 (62%), Gaps = 5/105 (4%)
Query: 15 KGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGL--NRCGKSCRLRWTNYLRPDIKRGKFS 72
KGP+T ED + +Y++++G +W P++ NR K CR RW N+L P + + ++
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNW---PRITSFLPNRSPKQCRERWFNHLDPAVVKHAWT 58
Query: 73 EEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKL 117
EE++ I + LG+KWS IA +PGRTDN IKN WN+ + K++
Sbjct: 59 PEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRI 103
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 68 RGKFSEEEEQLIVNLHAVLG-NKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDP 124
+G F+E E+ LI G W I + LP R+ + + W HL +++ P
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTP 59
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 14 KKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSE 73
KK +TPEED+ L + +HG W+ + NR + CR RW NYL P I ++
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHG-SDWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTA 67
Query: 74 EEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNT 111
EE+ L+V G +W+ IA PGRTD IKN W T
Sbjct: 68 EEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 67 KRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHL 113
K+ KF+ EE++++ A G+ W IA P R + ++ W +L
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYL 56
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 15 KGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEE 74
K +T EED KL + ++G W + +L + R + CR RW NY+ P ++ +S E
Sbjct: 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLM-ITRNPRQCRERWNNYINPALRTDPWSPE 59
Query: 75 EEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFW 109
E+ L+ +A G KW+ I+ L R+DN I+N W
Sbjct: 60 EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 60.1 bits (144), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 39/52 (75%)
Query: 66 IKRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKL 117
+K+ ++EEE+++I H LGN+W+ IA LPGRTDN IKN WN+ +++K+
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 59.7 bits (143), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 40/53 (75%)
Query: 65 DIKRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKL 117
++K+ ++EEE++++ H LGN+W+ IA LPGRTDN IKN WN+ +++K+
Sbjct: 2 EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 55.5 bits (132), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/52 (51%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Query: 15 KGPWTPEEDQKLIDYIRKHGHGSWRALPK-LAGLNRCGKSCRLRWTNYLRPD 65
KGPWT EEDQ+LI ++K+G W + K L G R GK CR RW N+L P+
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPE 52
Score = 34.3 bits (77), Expect = 0.10, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 68 RGKFSEEEEQLIVNLHAVLGNK-WSAIATRLPGRTDNEIKNFWNTHL 113
+G +++EE+Q ++ L G K WS IA L GR + + W+ HL
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 55.1 bits (131), Expect = 5e-08, Method: Composition-based stats.
Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 3/52 (5%)
Query: 15 KGPWTPEEDQKLIDYIRKHGHGSWRALPK-LAGLNRCGKSCRLRWTNYLRPD 65
KGPWT EEDQ++I+ ++K+G W + K L G R GK CR RW N+L P+
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPE 52
Score = 35.0 bits (79), Expect = 0.071, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 68 RGKFSEEEEQLIVNLHAVLGNK-WSAIATRLPGRTDNEIKNFWNTHL 113
+G +++EE+Q ++ L G K WS IA L GR + + W+ HL
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 54.3 bits (129), Expect = 9e-08, Method: Composition-based stats.
Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Query: 15 KGPWTPEEDQKLIDYIRKHGHGSWRALPK-LAGLNRCGKSCRLRWTNYLRPD 65
KGPWT EEDQ++I ++K+G W + K L G R GK CR RW N+L P+
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPE 52
Score = 35.0 bits (79), Expect = 0.068, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 68 RGKFSEEEEQLIVNLHAVLGNK-WSAIATRLPGRTDNEIKNFWNTHL 113
+G +++EE+Q ++ L G K WS IA L GR + + W+ HL
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 34.7 bits (78), Expect = 0.092, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 18 WTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFS 72
W ED+ L + K+G W + L + K C+ RW +L P IK+ ++S
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWS 65
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 33.9 bits (76), Expect = 0.15, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 15 KGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPD 65
K WT EED+KL + ++G W+ + NR C+ RW L P+
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 33.9 bits (76), Expect = 0.15, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 15 KGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPD 65
K WT EED+KL + ++G W+ + NR C+ RW L P+
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52
>pdb|2XB0|X Chain X, Dna-Binding Domain From Saccharomyces Cerevisiae
Chromatin- Remodelling Protein Chd1
Length = 270
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 18 WTPEEDQKLIDYIRKHGHGSW 38
WT EED+KL+ + K+G+GSW
Sbjct: 171 WTKEEDEKLLIGVFKYGYGSW 191
>pdb|3TED|A Chain A, Crystal Structure Of The Chd1 Dna-Binding Domain In
Complex With A Dna Duplex
Length = 271
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 18 WTPEEDQKLIDYIRKHGHGSW 38
WT EED+KL+ + K+G+GSW
Sbjct: 172 WTKEEDEKLLIGVFKYGYGSW 192
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 32.7 bits (73), Expect = 0.33, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 15 KGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62
K WT EED++L +R+ G W+ L NR + C+ RW L
Sbjct: 8 KVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVL 54
Score = 28.5 bits (62), Expect = 5.5, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 12/59 (20%)
Query: 51 GKSCRLRWTNYLRPDIKRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFW 109
G S +++WT+ EE+EQL + W +A+ P RTD + + W
Sbjct: 4 GSSGKVKWTH------------EEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRW 50
>pdb|1XG1|A Chain A, Solution Structure Of Myb-Domain Of Human Trf2
Length = 67
Score = 31.6 bits (70), Expect = 0.62, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 5 QISDEINNI-KKGPWTPEEDQKLIDYIRKHGHGSWRALPK-LAGLNRCGKSCRLRWTNYL 62
+ D NI KK WT EE + + ++K+G G+W A+ K +NR + RW
Sbjct: 3 HMEDSTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMK 62
Query: 63 R 63
R
Sbjct: 63 R 63
>pdb|1VF9|A Chain A, Solution Structure Of Human Trf2
Length = 64
Score = 31.6 bits (70), Expect = 0.77, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 6 ISDEINNI-KKGPWTPEEDQKLIDYIRKHGHGSWRALPK-LAGLNRCGKSCRLRWTNYLR 63
+ D NI KK WT EE + + ++K+G G+W A+ K +NR + RW R
Sbjct: 1 MEDSTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 60
>pdb|1VFC|A Chain A, Solution Structure Of The Dna Complex Of Human Trf2
Length = 63
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 8 DEINNI-KKGPWTPEEDQKLIDYIRKHGHGSWRALPK-LAGLNRCGKSCRLRWTNYLR 63
D NI KK WT EE + + ++K+G G+W A+ K +NR + RW R
Sbjct: 2 DSTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 59
>pdb|3SJM|A Chain A, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
pdb|3SJM|B Chain B, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
Length = 64
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 11 NNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPK-LAGLNRCGKSCRLRWTNYLR 63
N KK WT EE + + ++K+G G+W A+ K +NR + RW R
Sbjct: 7 NITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 60
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 30.4 bits (67), Expect = 1.7, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 70 KFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRP 129
K++ EE++L A G +W+ I+ + RT ++K++ + K K ++ G+D T
Sbjct: 11 KWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNK-VKCGLDKETPNQ 69
Query: 130 RT 131
+T
Sbjct: 70 KT 71
>pdb|1W0U|A Chain A, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0U|B Chain B, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna
Length = 55
Score = 30.4 bits (67), Expect = 1.7, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 14 KKGPWTPEEDQKLIDYIRKHGHGSWRALPK-LAGLNRCGKSCRLRWTNYLR 63
KK WT EE + + ++K+G G+W A+ K +NR + RW R
Sbjct: 1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 51
>pdb|1BA5|A Chain A, Dna-Binding Domain Of Human Telomeric Protein, Htrf1,
Nmr, 18 Structures
Length = 53
Score = 28.1 bits (61), Expect = 8.6, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 14 KKGPWTPEEDQKLIDYIRKHGHGSW-RALPKLAGLNRCGKSCRLRW 58
K+ W EED+ L +RK+G G+W + L NR + RW
Sbjct: 2 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRW 47
>pdb|1W0T|A Chain A, Htrf1 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0T|B Chain B, Htrf1 Dna-Binding Domain In Complex With Telomeric Dna
Length = 53
Score = 27.7 bits (60), Expect = 8.8, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 14 KKGPWTPEEDQKLIDYIRKHGHGSW-RALPKLAGLNRCGKSCRLRW 58
K+ W EED+ L +RK+G G+W + L NR + RW
Sbjct: 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRW 46
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,501,881
Number of Sequences: 62578
Number of extensions: 332849
Number of successful extensions: 831
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 762
Number of HSP's gapped (non-prelim): 49
length of query: 351
length of database: 14,973,337
effective HSP length: 100
effective length of query: 251
effective length of database: 8,715,537
effective search space: 2187599787
effective search space used: 2187599787
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)