Query 039198
Match_columns 351
No_of_seqs 267 out of 1907
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 07:15:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039198.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039198hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03091 hypothetical protein; 100.0 6.3E-36 1.4E-40 297.3 10.6 132 1-133 1-132 (459)
2 PLN03212 Transcription repress 100.0 1.6E-35 3.4E-40 276.8 9.5 129 2-131 13-141 (249)
3 KOG0048 Transcription factor, 100.0 5E-32 1.1E-36 254.5 10.5 117 12-128 6-122 (238)
4 KOG0048 Transcription factor, 100.0 1.7E-29 3.7E-34 237.4 4.7 100 63-163 4-105 (238)
5 PLN03212 Transcription repress 99.9 3.6E-25 7.9E-30 207.2 4.4 99 63-162 20-120 (249)
6 PLN03091 hypothetical protein; 99.9 6.8E-24 1.5E-28 211.6 6.2 101 62-163 8-110 (459)
7 KOG0049 Transcription factor, 99.9 5.6E-23 1.2E-27 211.0 9.0 143 11-154 249-447 (939)
8 KOG0049 Transcription factor, 99.8 1.7E-19 3.8E-24 185.5 5.6 109 1-111 347-459 (939)
9 PF13921 Myb_DNA-bind_6: Myb-l 99.6 8.4E-16 1.8E-20 114.6 2.9 60 18-79 1-60 (60)
10 COG5147 REB1 Myb superfamily p 99.5 8.2E-15 1.8E-19 150.5 7.1 135 11-147 16-150 (512)
11 PF13921 Myb_DNA-bind_6: Myb-l 99.5 7E-15 1.5E-19 109.6 4.0 60 71-130 1-60 (60)
12 KOG0050 mRNA splicing protein 99.4 4.7E-14 1E-18 143.0 2.8 107 12-120 4-110 (617)
13 PF00249 Myb_DNA-binding: Myb- 99.4 4.9E-13 1.1E-17 96.0 4.7 46 68-113 1-48 (48)
14 KOG0051 RNA polymerase I termi 99.3 9.1E-13 2E-17 136.9 5.1 136 14-153 383-554 (607)
15 PF00249 Myb_DNA-binding: Myb- 99.3 7.6E-13 1.7E-17 95.0 0.2 48 15-62 1-48 (48)
16 KOG0051 RNA polymerase I termi 99.2 1.1E-11 2.3E-16 129.1 4.8 121 13-135 306-452 (607)
17 smart00717 SANT SANT SWI3, AD 99.1 6.9E-11 1.5E-15 82.3 5.4 47 68-114 1-48 (49)
18 COG5147 REB1 Myb superfamily p 99.0 4.1E-11 9E-16 123.4 0.4 97 65-162 17-114 (512)
19 cd00167 SANT 'SWI3, ADA2, N-Co 99.0 5.9E-10 1.3E-14 76.5 5.3 44 70-113 1-45 (45)
20 KOG0050 mRNA splicing protein 98.9 6.8E-10 1.5E-14 113.2 2.3 88 66-155 5-93 (617)
21 smart00717 SANT SANT SWI3, AD 98.9 8.8E-10 1.9E-14 76.6 1.7 48 15-63 1-48 (49)
22 cd00167 SANT 'SWI3, ADA2, N-Co 98.7 5.1E-09 1.1E-13 71.8 1.4 44 17-61 1-44 (45)
23 TIGR01557 myb_SHAQKYF myb-like 97.7 2E-05 4.4E-10 59.1 1.7 49 14-62 2-54 (57)
24 KOG0457 Histone acetyltransfer 97.5 0.00012 2.6E-09 74.2 5.6 50 65-114 69-119 (438)
25 TIGR01557 myb_SHAQKYF myb-like 97.5 0.0002 4.4E-09 53.7 5.5 48 67-114 2-55 (57)
26 TIGR02894 DNA_bind_RsfA transc 97.3 0.00023 5.1E-09 63.7 3.9 51 67-118 3-60 (161)
27 KOG0457 Histone acetyltransfer 97.3 9E-05 1.9E-09 75.1 1.0 125 13-140 70-220 (438)
28 PF08914 Myb_DNA-bind_2: Rap1 97.0 0.00091 2E-08 51.5 4.1 50 68-117 2-61 (65)
29 KOG1279 Chromatin remodeling f 96.6 0.0023 5E-08 66.8 5.0 46 67-112 252-297 (506)
30 COG5259 RSC8 RSC chromatin rem 96.6 0.002 4.4E-08 66.1 4.2 44 68-111 279-322 (531)
31 PF13837 Myb_DNA-bind_4: Myb/S 96.5 0.0021 4.5E-08 50.9 3.0 49 68-116 1-67 (90)
32 PF13325 MCRS_N: N-terminal re 96.4 0.0048 1E-07 57.4 5.1 101 17-119 1-132 (199)
33 COG5259 RSC8 RSC chromatin rem 96.3 0.0014 3E-08 67.3 0.9 46 14-61 278-323 (531)
34 KOG1279 Chromatin remodeling f 96.0 0.0028 6.1E-08 66.2 1.6 49 11-61 249-297 (506)
35 PRK13923 putative spore coat p 95.9 0.0082 1.8E-07 54.5 3.7 51 66-117 3-60 (170)
36 TIGR02894 DNA_bind_RsfA transc 95.9 0.0021 4.5E-08 57.7 -0.2 51 13-65 2-58 (161)
37 PF13837 Myb_DNA-bind_4: Myb/S 95.4 0.0031 6.8E-08 49.8 -0.7 47 15-61 1-63 (90)
38 PF13873 Myb_DNA-bind_5: Myb/S 95.3 0.028 6.2E-07 43.6 4.4 48 68-115 2-71 (78)
39 COG5114 Histone acetyltransfer 95.1 0.019 4E-07 56.8 3.4 47 68-114 63-110 (432)
40 PF08914 Myb_DNA-bind_2: Rap1 94.6 0.008 1.7E-07 46.3 -0.3 52 15-66 2-61 (65)
41 COG5114 Histone acetyltransfer 94.1 0.013 2.8E-07 57.9 -0.2 108 16-128 64-195 (432)
42 PF13873 Myb_DNA-bind_5: Myb/S 93.2 0.024 5.1E-07 44.1 -0.1 49 14-62 1-69 (78)
43 PRK13923 putative spore coat p 93.2 0.018 3.8E-07 52.4 -1.0 50 13-64 3-58 (170)
44 PLN03142 Probable chromatin-re 91.4 0.26 5.6E-06 56.0 5.1 100 16-116 825-987 (1033)
45 KOG4282 Transcription factor G 88.0 0.76 1.7E-05 45.5 5.0 49 68-116 54-116 (345)
46 PF12776 Myb_DNA-bind_3: Myb/S 87.9 1.1 2.3E-05 35.7 4.9 45 70-114 1-63 (96)
47 COG5118 BDP1 Transcription ini 86.5 0.98 2.1E-05 45.9 4.6 47 69-115 366-412 (507)
48 PF09111 SLIDE: SLIDE; InterP 85.2 1.3 2.9E-05 37.9 4.3 51 65-115 46-112 (118)
49 PF09111 SLIDE: SLIDE; InterP 80.1 1.4 2.9E-05 37.9 2.4 35 11-45 45-82 (118)
50 KOG2656 DNA methyltransferase 76.9 2.9 6.3E-05 42.7 4.0 50 69-118 131-186 (445)
51 COG5118 BDP1 Transcription ini 72.9 1.7 3.6E-05 44.3 1.1 47 12-60 362-408 (507)
52 KOG4167 Predicted DNA-binding 71.0 6 0.00013 43.4 4.8 45 68-112 619-663 (907)
53 PF08281 Sigma70_r4_2: Sigma-7 70.4 8.5 0.00018 27.3 4.1 41 73-114 12-52 (54)
54 KOG1194 Predicted DNA-binding 70.2 7 0.00015 40.8 4.9 47 68-114 187-233 (534)
55 KOG4282 Transcription factor G 69.9 1.5 3.3E-05 43.4 0.1 47 16-62 55-113 (345)
56 KOG4167 Predicted DNA-binding 64.5 4.3 9.4E-05 44.5 2.2 44 15-60 619-662 (907)
57 PF11626 Rap1_C: TRF2-interact 64.3 6.5 0.00014 31.5 2.8 24 11-34 43-74 (87)
58 KOG4468 Polycomb-group transcr 62.0 15 0.00033 39.6 5.6 57 68-125 88-154 (782)
59 PF11626 Rap1_C: TRF2-interact 61.0 8.3 0.00018 30.9 2.8 17 64-80 43-59 (87)
60 PF13325 MCRS_N: N-terminal re 60.1 16 0.00034 34.3 4.8 44 70-114 1-47 (199)
61 PF13404 HTH_AsnC-type: AsnC-t 56.8 2.8 6.2E-05 29.3 -0.5 38 21-60 3-40 (42)
62 PRK11179 DNA-binding transcrip 56.6 14 0.0003 32.3 3.7 46 73-119 8-54 (153)
63 KOG0384 Chromodomain-helicase 53.4 12 0.00026 43.4 3.4 75 14-97 1132-1209(1373)
64 PRK11179 DNA-binding transcrip 53.4 3.9 8.4E-05 35.9 -0.4 46 20-67 8-53 (153)
65 PF01388 ARID: ARID/BRIGHT DNA 52.0 26 0.00057 27.7 4.3 38 78-115 40-90 (92)
66 PF13404 HTH_AsnC-type: AsnC-t 51.7 29 0.00062 24.2 3.9 37 74-111 3-40 (42)
67 PRK11169 leucine-responsive tr 51.0 3.8 8.2E-05 36.4 -0.8 46 20-67 13-58 (164)
68 PF12776 Myb_DNA-bind_3: Myb/S 50.6 8.6 0.00019 30.4 1.3 44 17-60 1-60 (96)
69 PRK11169 leucine-responsive tr 49.9 18 0.0004 32.0 3.4 46 73-119 13-59 (164)
70 smart00501 BRIGHT BRIGHT, ARID 44.6 37 0.0008 27.2 4.1 40 77-116 35-87 (93)
71 smart00595 MADF subfamily of S 43.0 18 0.00038 28.3 2.0 25 90-115 30-54 (89)
72 PF04545 Sigma70_r4: Sigma-70, 42.2 47 0.001 23.2 3.9 41 74-115 7-47 (50)
73 KOG2009 Transcription initiati 40.9 34 0.00074 36.9 4.2 46 66-111 407-452 (584)
74 PF05476 PET122: PET122; Inte 34.1 1.6E+02 0.0034 28.9 7.1 127 50-188 98-232 (267)
75 PF09420 Nop16: Ribosome bioge 33.7 83 0.0018 28.1 5.0 47 67-113 113-163 (164)
76 KOG2656 DNA methyltransferase 33.6 24 0.00051 36.4 1.6 49 12-61 127-180 (445)
77 KOG4468 Polycomb-group transcr 33.2 30 0.00065 37.5 2.3 48 14-62 87-143 (782)
78 KOG4329 DNA-binding protein [G 33.2 66 0.0014 33.1 4.6 42 69-110 278-320 (445)
79 PF11035 SnAPC_2_like: Small n 32.6 1.3E+02 0.0028 30.4 6.4 48 68-116 21-72 (344)
80 TIGR02985 Sig70_bacteroi1 RNA 32.4 71 0.0015 26.7 4.2 35 79-114 121-155 (161)
81 PRK09413 IS2 repressor TnpA; R 32.2 59 0.0013 27.4 3.6 46 13-62 8-53 (121)
82 PLN03142 Probable chromatin-re 30.7 32 0.00069 39.7 2.2 34 12-45 923-956 (1033)
83 PF07750 GcrA: GcrA cell cycle 30.2 49 0.0011 29.8 3.0 40 70-110 2-41 (162)
84 smart00344 HTH_ASNC helix_turn 28.5 1E+02 0.0022 24.7 4.3 45 74-119 3-48 (108)
85 cd08803 Death_ank3 Death domai 26.5 80 0.0017 25.4 3.3 29 76-105 4-32 (84)
86 cd08319 Death_RAIDD Death doma 26.3 73 0.0016 25.6 3.0 27 76-103 2-28 (83)
87 PF10545 MADF_DNA_bdg: Alcohol 24.9 54 0.0012 24.7 2.0 25 90-114 29-54 (85)
88 TIGR02937 sigma70-ECF RNA poly 23.3 1.1E+02 0.0025 24.6 3.8 33 82-115 121-153 (158)
89 PF04504 DUF573: Protein of un 23.1 1.5E+02 0.0032 24.4 4.3 44 70-113 6-62 (98)
90 PF05263 DUF722: Protein of un 22.9 1.3E+02 0.0029 26.3 4.2 44 71-117 82-127 (130)
91 smart00351 PAX Paired Box doma 22.6 1.2E+02 0.0027 25.7 4.0 73 13-87 13-92 (125)
92 PRK09645 RNA polymerase sigma 22.3 1.6E+02 0.0034 25.4 4.7 27 86-113 133-159 (173)
93 smart00344 HTH_ASNC helix_turn 21.8 32 0.0007 27.7 0.2 44 21-66 3-46 (108)
94 KOG1194 Predicted DNA-binding 21.5 44 0.00095 35.1 1.1 46 14-61 186-231 (534)
95 COG1522 Lrp Transcriptional re 21.4 29 0.00064 29.6 -0.2 48 20-69 7-54 (154)
No 1
>PLN03091 hypothetical protein; Provisional
Probab=100.00 E-value=6.3e-36 Score=297.30 Aligned_cols=132 Identities=63% Similarity=1.153 Sum_probs=127.5
Q ss_pred CCCCccccccCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHH
Q 039198 1 MESLQISDEINNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIV 80 (351)
Q Consensus 1 m~R~~~c~~~~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll 80 (351)
|||++||.+ ..++|++||+|||++|+++|++||..+|..||+.++++|+++|||+||.++|+|.+++|+||+|||++|+
T Consensus 1 mgr~~Cc~K-qklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLL 79 (459)
T PLN03091 1 MGRHSCCYK-QKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLII 79 (459)
T ss_pred CCCCccCcC-CCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHH
Confidence 999999999 9999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred HHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhhhhhcCCCCccCcchhhhH
Q 039198 81 NLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTDL 133 (351)
Q Consensus 81 ~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~~~~t~eEd~~l~~l 133 (351)
+++.+||.+|..||+.|+|||+++||+||+.+|++++++.+..+.+++++.+.
T Consensus 80 eL~k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKklr~~~I~p~t~kpl~e~ 132 (459)
T PLN03091 80 ELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEV 132 (459)
T ss_pred HHHHHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCcccc
Confidence 99999999999999999999999999999999999999999998888877653
No 2
>PLN03212 Transcription repressor MYB5; Provisional
Probab=100.00 E-value=1.6e-35 Score=276.76 Aligned_cols=129 Identities=61% Similarity=1.174 Sum_probs=123.8
Q ss_pred CCCccccccCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHH
Q 039198 2 ESLQISDEINNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIVN 81 (351)
Q Consensus 2 ~R~~~c~~~~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~ 81 (351)
.|+|||.+ ++++|++||+|||++|+++|++||..+|..||+.++++|+++|||+||.++|+|.+++|+||+|||++|++
T Consensus 13 ~~~pcc~K-~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLle 91 (249)
T PLN03212 13 KTTPCCTK-MGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILR 91 (249)
T ss_pred CCCCCccc-CCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHH
Confidence 36899999 99999999999999999999999998999999999889999999999999999999999999999999999
Q ss_pred HHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhhhhhcCCCCccCcchhh
Q 039198 82 LHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRT 131 (351)
Q Consensus 82 lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~~~~t~eEd~~l~ 131 (351)
++..||++|..||+.|+|||+++||+||+.++++.+++.+..+++..++.
T Consensus 92 l~~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i~p~~~kp~~ 141 (249)
T PLN03212 92 LHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPLD 141 (249)
T ss_pred HHHhccccHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999988887654
No 3
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.97 E-value=5e-32 Score=254.53 Aligned_cols=117 Identities=73% Similarity=1.250 Sum_probs=109.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchh
Q 039198 12 NIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIVNLHAVLGNKWS 91 (351)
Q Consensus 12 ~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kW~ 91 (351)
.+.||+||+|||++|+++|++||.++|..||+.+|++|++|+||+||.+||+|+++||.||+|||++|++++..+|++|+
T Consensus 6 ~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrWs 85 (238)
T KOG0048|consen 6 ELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRWS 85 (238)
T ss_pred cccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHHH
Confidence 34579999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCHHHHHHHHHHhhhhhhhcCCCCccCcc
Q 039198 92 AIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHR 128 (351)
Q Consensus 92 ~IA~~lpgRT~~qcr~RW~~~Lr~~ik~~~~t~eEd~ 128 (351)
.||++|||||++.+|++|+.+|++++.....++....
T Consensus 86 ~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~~~~~~~~ 122 (238)
T KOG0048|consen 86 LIAGRLPGRTDNEVKNHWNTHLKKKLLKMGIDPSTHR 122 (238)
T ss_pred HHHhhCCCcCHHHHHHHHHHHHHHHHHHcCCCCCccc
Confidence 9999999999999999999999999988775544443
No 4
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.95 E-value=1.7e-29 Score=237.40 Aligned_cols=100 Identities=18% Similarity=0.254 Sum_probs=95.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCC-CCCHHHHHHHHHHhhhhhhhcCCCCccCcchhhhHHHHhCCC
Q 039198 63 RPDIKRGKFSEEEEQLIVNLHAVLG-NKWSAIATRLP-GRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTDLNNVLANL 140 (351)
Q Consensus 63 ~p~lkrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lp-gRT~~qcr~RW~~~Lr~~ik~~~~t~eEd~~l~~l~~~~Gn~ 140 (351)
++.+.||+||+|||++|+++|++|| ++|..||+.++ +||+++||.||.+||+|.++++.||++|++.|+.+|.++||+
T Consensus 4 k~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNr 83 (238)
T KOG0048|consen 4 NPELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNR 83 (238)
T ss_pred CccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcH
Confidence 3445689999999999999999999 77999999999 999999999999999999999999999999999999999999
Q ss_pred chHHhhhccCCCCCCCCCCccch
Q 039198 141 PQLLAAANFAVGNLMNVPNSWDI 163 (351)
Q Consensus 141 w~~Ia~~~~~grt~~~~~n~wn~ 163 (351)
|+.||+.+| |||||+||||||+
T Consensus 84 Ws~IA~~LP-GRTDNeIKN~Wnt 105 (238)
T KOG0048|consen 84 WSLIAGRLP-GRTDNEVKNHWNT 105 (238)
T ss_pred HHHHHhhCC-CcCHHHHHHHHHH
Confidence 999999999 9999999999993
No 5
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.91 E-value=3.6e-25 Score=207.24 Aligned_cols=99 Identities=21% Similarity=0.340 Sum_probs=95.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccC-CCCCHHHHHHHHHHhhhhhhhcCCCCccCcchhhhHHHHhCCC
Q 039198 63 RPDIKRGKFSEEEEQLIVNLHAVLG-NKWSAIATRL-PGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTDLNNVLANL 140 (351)
Q Consensus 63 ~p~lkrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~l-pgRT~~qcr~RW~~~Lr~~ik~~~~t~eEd~~l~~l~~~~Gn~ 140 (351)
++.++|++||+|||++|+++|++|| .+|..||+.+ ++|+++|||.||.++|+|.+++++||++|++.|++++..+|++
T Consensus 20 K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~GnK 99 (249)
T PLN03212 20 KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNR 99 (249)
T ss_pred cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhcccc
Confidence 4689999999999999999999999 6799999998 5999999999999999999999999999999999999999999
Q ss_pred chHHhhhccCCCCCCCCCCccc
Q 039198 141 PQLLAAANFAVGNLMNVPNSWD 162 (351)
Q Consensus 141 w~~Ia~~~~~grt~~~~~n~wn 162 (351)
|+.||..++ |||++.|||+|+
T Consensus 100 Ws~IAk~Lp-GRTDnqIKNRWn 120 (249)
T PLN03212 100 WSLIAGRIP-GRTDNEIKNYWN 120 (249)
T ss_pred HHHHHhhcC-CCCHHHHHHHHH
Confidence 999999998 999999999999
No 6
>PLN03091 hypothetical protein; Provisional
Probab=99.89 E-value=6.8e-24 Score=211.64 Aligned_cols=101 Identities=19% Similarity=0.282 Sum_probs=96.3
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCC-CCCHHHHHHHHHHhhhhhhhcCCCCccCcchhhhHHHHhCC
Q 039198 62 LRPDIKRGKFSEEEEQLIVNLHAVLG-NKWSAIATRLP-GRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTDLNNVLAN 139 (351)
Q Consensus 62 L~p~lkrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lp-gRT~~qcr~RW~~~Lr~~ik~~~~t~eEd~~l~~l~~~~Gn 139 (351)
.++.++||+||+|||++|+++|++|| .+|..||+.++ +|+++|||.||.++|+|.+++++|+++||+.|+++++.+|+
T Consensus 8 ~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~Gn 87 (459)
T PLN03091 8 YKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGN 87 (459)
T ss_pred cCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCc
Confidence 34689999999999999999999999 67999999885 99999999999999999999999999999999999999999
Q ss_pred CchHHhhhccCCCCCCCCCCccch
Q 039198 140 LPQLLAAANFAVGNLMNVPNSWDI 163 (351)
Q Consensus 140 ~w~~Ia~~~~~grt~~~~~n~wn~ 163 (351)
+|+.||..++ ||+++.|||+|+.
T Consensus 88 KWskIAk~LP-GRTDnqIKNRWns 110 (459)
T PLN03091 88 RWSQIAAQLP-GRTDNEIKNLWNS 110 (459)
T ss_pred chHHHHHhcC-CCCHHHHHHHHHH
Confidence 9999999998 9999999999993
No 7
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.88 E-value=5.6e-23 Score=210.96 Aligned_cols=143 Identities=21% Similarity=0.308 Sum_probs=134.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccc------------------------------------
Q 039198 11 NNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSC------------------------------------ 54 (351)
Q Consensus 11 ~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqC------------------------------------ 54 (351)
|.++|.-|++|||++|+.+...+++.+|..||..+|.+|+..||
T Consensus 249 P~~nk~~WS~EE~E~L~AiA~A~~~~~W~~IA~~Lgt~RS~yQC~~kF~t~~~~L~ekeWsEEed~kL~alV~~~~~nSh 328 (939)
T KOG0049|consen 249 PKWNKEHWSNEEVEKLKALAEAPKFVSWPMIALNLGTNRSSYQCMEKFKTEVSQLSEKEWSEEEDTKLIALVKITSINSH 328 (939)
T ss_pred CccchhccChHHHHHHHHHHhccccccHHHHHHHhCCCcchHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHhhccCc
Confidence 89999999999999999999999999999999999988999999
Q ss_pred ------------------ccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCc-hhhhhccCCCCCHHHHHHHHHHhhhh
Q 039198 55 ------------------RLRWTNYLRPDIKRGKFSEEEEQLIVNLHAVLGNK-WSAIATRLPGRTDNEIKNFWNTHLKK 115 (351)
Q Consensus 55 ------------------r~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~k-W~~IA~~lpgRT~~qcr~RW~~~Lr~ 115 (351)
..||...|+|++++|+||++||.+|+.+|++||++ |.+|...+|||++.|||.||.+.|..
T Consensus 329 I~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~~ 408 (939)
T KOG0049|consen 329 IQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVLNR 408 (939)
T ss_pred cchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHHHH
Confidence 56777889999999999999999999999999965 99999999999999999999999999
Q ss_pred hhhcCCCCccCcchhhhHHHHhC-CCchHHhhhccCCCCC
Q 039198 116 KLLQMGIDPVTHRPRTDLNNVLA-NLPQLLAAANFAVGNL 154 (351)
Q Consensus 116 ~ik~~~~t~eEd~~l~~l~~~~G-n~w~~Ia~~~~~grt~ 154 (351)
.++.+.|+-.||..|+.++.+|| ..|..||..++ -++.
T Consensus 409 s~K~~rW~l~edeqL~~~V~~YG~g~WakcA~~Lp-~~t~ 447 (939)
T KOG0049|consen 409 SAKVERWTLVEDEQLLYAVKVYGKGNWAKCAMLLP-KKTS 447 (939)
T ss_pred hhccCceeecchHHHHHHHHHHccchHHHHHHHcc-ccch
Confidence 99999999999999999999999 57999999998 4553
No 8
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.77 E-value=1.7e-19 Score=185.50 Aligned_cols=109 Identities=24% Similarity=0.434 Sum_probs=101.5
Q ss_pred CCCCccccccCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHH
Q 039198 1 MESLQISDEINNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIV 80 (351)
Q Consensus 1 m~R~~~c~~~~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll 80 (351)
++|...... |++++|+||++||.+|+.+|.+||..+|.+|-..+ |||+..|||+||.+.|....|+|.||-.||+.|+
T Consensus 347 I~R~~~~Ld-Psikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~v-PnRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~ 424 (939)
T KOG0049|consen 347 ITRFSHTLD-PSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAV-PNRSDSQCRERYTNVLNRSAKVERWTLVEDEQLL 424 (939)
T ss_pred hhhheeccC-ccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhc-CCccHHHHHHHHHHHHHHhhccCceeecchHHHH
Confidence 467777777 99999999999999999999999999999999988 8999999999999999999999999999999999
Q ss_pred HHHHHhC-CchhhhhccCCCCCH---HHHHHHHHH
Q 039198 81 NLHAVLG-NKWSAIATRLPGRTD---NEIKNFWNT 111 (351)
Q Consensus 81 ~lv~~~G-~kW~~IA~~lpgRT~---~qcr~RW~~ 111 (351)
.+|++|| ++|.+||..||+||+ ..||.|+..
T Consensus 425 ~~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~~ 459 (939)
T KOG0049|consen 425 YAVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRLIA 459 (939)
T ss_pred HHHHHHccchHHHHHHHccccchhHHHHHHHHHHH
Confidence 9999999 889999999999999 666766654
No 9
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.57 E-value=8.4e-16 Score=114.64 Aligned_cols=60 Identities=45% Similarity=0.949 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHH
Q 039198 18 WTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLI 79 (351)
Q Consensus 18 WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkrg~WT~EED~~L 79 (351)
||+|||++|+.+|.+||. +|..||+.|| .|++.+|+.||.++|.+.+++++||++||++|
T Consensus 1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~l~-~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L 60 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-DWKKIAEHLG-NRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL 60 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS--HHHHHHHST-TS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCc-CHHHHHHHHC-cCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence 999999999999999995 9999999994 89999999999999999999999999999987
No 10
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=99.54 E-value=8.2e-15 Score=150.49 Aligned_cols=135 Identities=25% Similarity=0.420 Sum_probs=119.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCch
Q 039198 11 NNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIVNLHAVLGNKW 90 (351)
Q Consensus 11 ~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kW 90 (351)
..++.|.|+..||+.|..+|+++|..+|..||+.+. .|++++|+.||.++++|.++++.|+.|||..|+.+..++|..|
T Consensus 16 ~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~-~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~w 94 (512)
T COG5147 16 TKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQW 94 (512)
T ss_pred ceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhc-ccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCchh
Confidence 457899999999999999999999999999999995 5999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCHHHHHHHHHHhhhhhhhcCCCCccCcchhhhHHHHhCCCchHHhhh
Q 039198 91 SAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTDLNNVLANLPQLLAAA 147 (351)
Q Consensus 91 ~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~~~~t~eEd~~l~~l~~~~Gn~w~~Ia~~ 147 (351)
..||..+++|++.+|.+||...+..... ..++.......+....-|++.|..+...
T Consensus 95 stia~~~d~rt~~~~~ery~~~~~~~~s-~~~s~~~~~~~f~k~d~f~~~~~~~~~~ 150 (512)
T COG5147 95 STIADYKDRRTAQQCVERYVNTLEDLSS-THDSKLQRRNEFDKIDPFNENSARRPDI 150 (512)
T ss_pred hhhccccCccchHHHHHHHHHHhhhhhc-cccccccchhhccccCchhhhhhhhhhh
Confidence 9999999999999999999999988776 5566666666666666666666665543
No 11
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.52 E-value=7e-15 Score=109.64 Aligned_cols=60 Identities=28% Similarity=0.527 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhhhhhcCCCCccCcchh
Q 039198 71 FSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPR 130 (351)
Q Consensus 71 WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~~~~t~eEd~~l 130 (351)
||+|||++|+.+|..||.+|..||+.|+.||..+|+.||..+|++.+.+++|+++|+..|
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L 60 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL 60 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence 999999999999999999999999999669999999999999999999999999998653
No 12
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=4.7e-14 Score=142.95 Aligned_cols=107 Identities=28% Similarity=0.570 Sum_probs=100.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchh
Q 039198 12 NIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIVNLHAVLGNKWS 91 (351)
Q Consensus 12 ~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kW~ 91 (351)
-++.|-|+.-||+.|..+|.+||...|.+|++.+ ...+++||+.||..+++|.+++..|+.|||++|+.+...+...|.
T Consensus 4 ~~kggvwrntEdeilkaav~kyg~nqws~i~sll-~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwr 82 (617)
T KOG0050|consen 4 EIKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLL-NRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWR 82 (617)
T ss_pred EEecceecccHHHHHHHHHHHcchHHHHHHHHHH-hhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccc
Confidence 3678999999999999999999999999999999 589999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCHHHHHHHHHHhhhhhhhcC
Q 039198 92 AIATRLPGRTDNEIKNFWNTHLKKKLLQM 120 (351)
Q Consensus 92 ~IA~~lpgRT~~qcr~RW~~~Lr~~ik~~ 120 (351)
.||..| ||++.||-.||++.|...+...
T Consensus 83 tIa~i~-gr~~~qc~eRy~~ll~~~~s~~ 110 (617)
T KOG0050|consen 83 TIADIM-GRTSQQCLERYNNLLDVYVSYH 110 (617)
T ss_pred hHHHHh-hhhHHHHHHHHHHHHHHHHhhh
Confidence 999998 9999999999999998766543
No 13
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.38 E-value=4.9e-13 Score=95.97 Aligned_cols=46 Identities=33% Similarity=0.690 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCc-hhhhhccCC-CCCHHHHHHHHHHhh
Q 039198 68 RGKFSEEEEQLIVNLHAVLGNK-WSAIATRLP-GRTDNEIKNFWNTHL 113 (351)
Q Consensus 68 rg~WT~EED~~Ll~lv~~~G~k-W~~IA~~lp-gRT~~qcr~RW~~~L 113 (351)
|++||+|||++|+++|.+||.+ |..||..|| +||..||++||++++
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 6899999999999999999977 999999999 999999999999875
No 14
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=99.33 E-value=9.1e-13 Score=136.93 Aligned_cols=136 Identities=24% Similarity=0.370 Sum_probs=106.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCC--CCCCCCCHHHHHHHHHHHH-------
Q 039198 14 KKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPD--IKRGKFSEEEEQLIVNLHA------- 84 (351)
Q Consensus 14 kKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~--lkrg~WT~EED~~Ll~lv~------- 84 (351)
.+|.||+||++.|..+|..+|. +|.+|+..+| |.+..|++||.++...+ .++|.||.||+++|+++|.
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~~lg--r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~ 459 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHGN-DWKEIGKALG--RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREAL 459 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhcc-cHHHHHHHHc--cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999995 9999999997 99999999999999888 4899999999999999995
Q ss_pred Hh-------C------------CchhhhhccCCCCCHHHHHHHHHHhhhhhh-hcCCCCcc-CcchhhhHHHHh------
Q 039198 85 VL-------G------------NKWSAIATRLPGRTDNEIKNFWNTHLKKKL-LQMGIDPV-THRPRTDLNNVL------ 137 (351)
Q Consensus 85 ~~-------G------------~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~i-k~~~~t~e-Ed~~l~~l~~~~------ 137 (351)
++ | =.|..|++.++.|+..|||-+|+.++.... ..+.+... ...-+++-...+
T Consensus 460 q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~~~~~~~~~~v~l~ErL~dl~~~e~~ 539 (607)
T KOG0051|consen 460 QPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNKRQESKGSDMVWLLERLSDLDLTEES 539 (607)
T ss_pred cccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhcccccccchhHHHHHHHHhcccccCC
Confidence 23 1 149999999999999999999998776544 44555542 112222222222
Q ss_pred CCCchHHhhhccCCCC
Q 039198 138 ANLPQLLAAANFAVGN 153 (351)
Q Consensus 138 Gn~w~~Ia~~~~~grt 153 (351)
.--|.-|+...+ |..
T Consensus 540 ~IDW~~l~~~~~-g~~ 554 (607)
T KOG0051|consen 540 PIDWKSLAEYAP-GES 554 (607)
T ss_pred ccCHHHHHHhCC-CCC
Confidence 234777777666 443
No 15
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.26 E-value=7.6e-13 Score=94.97 Aligned_cols=48 Identities=42% Similarity=0.870 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 039198 15 KGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62 (351)
Q Consensus 15 Kg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L 62 (351)
|++||+|||++|+++|.+||.++|..||..++.+||+.||+.||.+++
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 689999999999999999998779999999955999999999998864
No 16
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=99.20 E-value=1.1e-11 Score=129.09 Aligned_cols=121 Identities=26% Similarity=0.313 Sum_probs=102.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHh----CCC-------------------CcccccccccccccccccccccccccCCCC-CC
Q 039198 13 IKKGPWTPEEDQKLIDYIRKH----GHG-------------------SWRALPKLAGLNRCGKSCRLRWTNYLRPDI-KR 68 (351)
Q Consensus 13 lkKg~WT~EED~~L~~~V~k~----g~~-------------------nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~l-kr 68 (351)
++-+.|+.|||+.|-..|..| |-. -|..|...+ |.|+.+.++.+-++...|-- ++
T Consensus 306 ~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~L-p~R~~~siy~~~rR~y~~FE~~r 384 (607)
T KOG0051|consen 306 INLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLL-PYRDRKSIYHHLRRAYTPFENKR 384 (607)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhc-CcccchhHHHHHHhcCCcccccc
Confidence 455899999999999998777 211 256677777 67999999884444444433 99
Q ss_pred CCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhhh--hhcCCCCccCcchhhhHHH
Q 039198 69 GKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKK--LLQMGIDPVTHRPRTDLNN 135 (351)
Q Consensus 69 g~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~--ik~~~~t~eEd~~l~~l~~ 135 (351)
|.||+||++.|..+|.++|+.|..|+..| ||.+..|++||+.+.+.. ..++.|+-+|.+.|+++|+
T Consensus 385 g~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~ 452 (607)
T KOG0051|consen 385 GKWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVN 452 (607)
T ss_pred CCCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999 999999999999999987 5889999999999999885
No 17
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=99.15 E-value=6.9e-11 Score=82.29 Aligned_cols=47 Identities=43% Similarity=0.882 Sum_probs=44.3
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhh
Q 039198 68 RGKFSEEEEQLIVNLHAVLG-NKWSAIATRLPGRTDNEIKNFWNTHLK 114 (351)
Q Consensus 68 rg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcr~RW~~~Lr 114 (351)
+++||++||.+|+.++..|| .+|..||..+++||..+|+.||..+++
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999 999999999999999999999998764
No 18
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=99.03 E-value=4.1e-11 Score=123.44 Aligned_cols=97 Identities=23% Similarity=0.297 Sum_probs=91.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhhhhhhcCCCCccCcchhhhHHHHhCCCchH
Q 039198 65 DIKRGKFSEEEEQLIVNLHAVLG-NKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTDLNNVLANLPQL 143 (351)
Q Consensus 65 ~lkrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~~~~t~eEd~~l~~l~~~~Gn~w~~ 143 (351)
..+.|.|+..||+.|..+|+.|| ++|+.||..+.-|++++|+.||++++.|.+++..|+.+|+..++++...+|++|+.
T Consensus 17 ~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~wst 96 (512)
T COG5147 17 KRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWST 96 (512)
T ss_pred eecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCchhhh
Confidence 45678999999999999999999 66999999998899999999999999999999999999999999999999999999
Q ss_pred HhhhccCCCCCCCCCCccc
Q 039198 144 LAAANFAVGNLMNVPNSWD 162 (351)
Q Consensus 144 Ia~~~~~grt~~~~~n~wn 162 (351)
||...+ ||+...+.++|.
T Consensus 97 ia~~~d-~rt~~~~~ery~ 114 (512)
T COG5147 97 IADYKD-RRTAQQCVERYV 114 (512)
T ss_pred hccccC-ccchHHHHHHHH
Confidence 999998 899888777776
No 19
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=99.01 E-value=5.9e-10 Score=76.48 Aligned_cols=44 Identities=36% Similarity=0.755 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhh
Q 039198 70 KFSEEEEQLIVNLHAVLG-NKWSAIATRLPGRTDNEIKNFWNTHL 113 (351)
Q Consensus 70 ~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcr~RW~~~L 113 (351)
+||+|||..|+.++..|| .+|..||..+++|+..+|+.||.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence 599999999999999999 89999999999999999999998753
No 20
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.88 E-value=6.8e-10 Score=113.16 Aligned_cols=88 Identities=19% Similarity=0.242 Sum_probs=81.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhhhhhhcCCCCccCcchhhhHHHHhCCCchHH
Q 039198 66 IKRGKFSEEEEQLIVNLHAVLG-NKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTDLNNVLANLPQLL 144 (351)
Q Consensus 66 lkrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~~~~t~eEd~~l~~l~~~~Gn~w~~I 144 (351)
++.|.|+.-||+.|-..|++|| +.|+.|++.+.-.+..||+.||..+|.|.|++..|+.+||..++.+...+...|..|
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrtI 84 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRTI 84 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccchH
Confidence 5678999999999999999999 569999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCC
Q 039198 145 AAANFAVGNLM 155 (351)
Q Consensus 145 a~~~~~grt~~ 155 (351)
+..+. |+.+
T Consensus 85 a~i~g--r~~~ 93 (617)
T KOG0050|consen 85 ADIMG--RTSQ 93 (617)
T ss_pred HHHhh--hhHH
Confidence 87654 5543
No 21
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.86 E-value=8.8e-10 Score=76.63 Aligned_cols=48 Identities=42% Similarity=0.882 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccC
Q 039198 15 KGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLR 63 (351)
Q Consensus 15 Kg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~ 63 (351)
+++||++||++|+.++..||..+|..||..+ ++|++.+|+.||.+++.
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~-~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKEL-PGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHc-CCCCHHHHHHHHHHHcC
Confidence 5789999999999999999966999999999 59999999999998764
No 22
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.70 E-value=5.1e-09 Score=71.77 Aligned_cols=44 Identities=41% Similarity=0.866 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc
Q 039198 17 PWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 61 (351)
Q Consensus 17 ~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~ 61 (351)
+||+|||+.|+.++.+||..+|..||+.+ ++|++.+|+.||.++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~-~~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKEL-PGRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHc-CCCCHHHHHHHHHHh
Confidence 59999999999999999977999999999 589999999999765
No 23
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.66 E-value=2e-05 Score=59.12 Aligned_cols=49 Identities=14% Similarity=0.371 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCc---ccccccccccc-ccccccccccccc
Q 039198 14 KKGPWTPEEDQKLIDYIRKHGHGSW---RALPKLAGLNR-CGKSCRLRWTNYL 62 (351)
Q Consensus 14 kKg~WT~EED~~L~~~V~k~g~~nW---~~IA~~lgp~R-s~kqCr~Rw~n~L 62 (351)
++-.||+||..+++++|+.+|.++| ..|++.++..| |..||+.+++.|.
T Consensus 2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~ 54 (57)
T TIGR01557 2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR 54 (57)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 4668999999999999999998899 99999887666 9999999887763
No 24
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.53 E-value=0.00012 Score=74.19 Aligned_cols=50 Identities=24% Similarity=0.465 Sum_probs=45.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhh
Q 039198 65 DIKRGKFSEEEEQLIVNLHAVLG-NKWSAIATRLPGRTDNEIKNFWNTHLK 114 (351)
Q Consensus 65 ~lkrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcr~RW~~~Lr 114 (351)
.+-...||.+|+..|+++++.|| |+|..||.+++.|+..+|+.+|.++.-
T Consensus 69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv 119 (438)
T KOG0457|consen 69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFV 119 (438)
T ss_pred CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHh
Confidence 34557899999999999999999 999999999999999999999986543
No 25
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.53 E-value=0.0002 Score=53.73 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=41.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-Cch---hhhhccCC-CC-CHHHHHHHHHHhhh
Q 039198 67 KRGKFSEEEEQLIVNLHAVLG-NKW---SAIATRLP-GR-TDNEIKNFWNTHLK 114 (351)
Q Consensus 67 krg~WT~EED~~Ll~lv~~~G-~kW---~~IA~~lp-gR-T~~qcr~RW~~~Lr 114 (351)
+|-.||+||..+++++++.+| ++| ..|++.|. .| |..||+.+.+.|..
T Consensus 2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~ 55 (57)
T TIGR01557 2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL 55 (57)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 355799999999999999999 499 99999885 45 99999999887653
No 26
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=97.30 E-value=0.00023 Score=63.73 Aligned_cols=51 Identities=20% Similarity=0.371 Sum_probs=44.7
Q ss_pred CCCCCCHHHHHHHHHHHHHh---CCc----hhhhhccCCCCCHHHHHHHHHHhhhhhhh
Q 039198 67 KRGKFSEEEEQLIVNLHAVL---GNK----WSAIATRLPGRTDNEIKNFWNTHLKKKLL 118 (351)
Q Consensus 67 krg~WT~EED~~Ll~lv~~~---G~k----W~~IA~~lpgRT~~qcr~RW~~~Lr~~ik 118 (351)
+...||.|||.+|...|-+| |+. +..++..| +||...|.-||+.++|+...
T Consensus 3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~ 60 (161)
T TIGR02894 3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYE 60 (161)
T ss_pred cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHH
Confidence 45689999999999999988 543 89999999 99999999999999998653
No 27
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.26 E-value=9e-05 Score=75.12 Aligned_cols=125 Identities=15% Similarity=0.308 Sum_probs=81.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCC-CCCCCCC-------CHHHHHHHHHH-H
Q 039198 13 IKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRP-DIKRGKF-------SEEEEQLIVNL-H 83 (351)
Q Consensus 13 lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p-~lkrg~W-------T~EED~~Ll~l-v 83 (351)
+-...||.+|+-+|+++++.||.|||..||..+| .|+..+|+++|.+++-. .+-.-+| ...||....+- +
T Consensus 70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIG-tKtkeeck~hy~k~fv~s~~~~~~~i~~~~~~~q~e~~~~~k~~~ 148 (438)
T KOG0457|consen 70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIG-TKTKEECKEHYLKHFVNSPIFPLPDISLGIGVNQDEDAAMAKNRA 148 (438)
T ss_pred CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHc-ccchHHHHHHHHHHHhcCccccccccccccCcchHHHhhhccccc
Confidence 5567899999999999999999999999999999 99999999999986532 2222222 34455555444 3
Q ss_pred HHhCC-------------chhhhhccCCCCCHHHHHHHHHHhhhhhhhcCCCCc----cCcchhhhHHHHhCCC
Q 039198 84 AVLGN-------------KWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDP----VTHRPRTDLNNVLANL 140 (351)
Q Consensus 84 ~~~G~-------------kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~~~~t~----eEd~~l~~l~~~~Gn~ 140 (351)
..++. .=..|+..||+|.+... -|.+.-...+..+.+.+ ++.+..+..+..|-.+
T Consensus 149 ~~~~~~~~~pr~p~~~~p~~~e~~gyMp~R~dFd~--Eydn~AE~li~dm~f~e~D~~~d~elKla~ldiY~sr 220 (438)
T KOG0457|consen 149 EPFQPTDLVPRKPGVSNPLRREISGYMPGRLDFDE--EYDNEAEQLIRDMEFEEDDTEEDHELKLAVLDIYNSR 220 (438)
T ss_pred ccCCCCCCCCCCCCCCCchHHHHhhhCccchhhhh--hhcchhhhhHhhcccCCCCcHHHHHHHHHHHHHHHHH
Confidence 33332 13578889999985432 23333444444555433 2333334455556433
No 28
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=97.01 E-value=0.00091 Score=51.54 Aligned_cols=50 Identities=24% Similarity=0.482 Sum_probs=33.2
Q ss_pred CCCCCHHHHHHHHHHHHHh---C-----Cc-hhhhhccCC-CCCHHHHHHHHHHhhhhhh
Q 039198 68 RGKFSEEEEQLIVNLHAVL---G-----NK-WSAIATRLP-GRTDNEIKNFWNTHLKKKL 117 (351)
Q Consensus 68 rg~WT~EED~~Ll~lv~~~---G-----~k-W~~IA~~lp-gRT~~qcr~RW~~~Lr~~i 117 (351)
|-+||.|||+.|+++|..+ | ++ |..+++..+ .+|-.+-|+||...|++..
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~ 61 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP 61 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 4579999999999999654 2 22 999999888 9999999999999888754
No 29
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=96.63 E-value=0.0023 Score=66.82 Aligned_cols=46 Identities=15% Similarity=0.359 Sum_probs=42.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHh
Q 039198 67 KRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTH 112 (351)
Q Consensus 67 krg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~ 112 (351)
-++.||.+|..+|++.|+.||.+|.+||.++++||..||-.++...
T Consensus 252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL 297 (506)
T ss_pred CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence 4578999999999999999999999999999999999999998654
No 30
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=96.61 E-value=0.002 Score=66.07 Aligned_cols=44 Identities=16% Similarity=0.321 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHH
Q 039198 68 RGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNT 111 (351)
Q Consensus 68 rg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~ 111 (351)
...||.+|..+|++.|+.||..|.+||.+++.|+..||-.||..
T Consensus 279 dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~ 322 (531)
T COG5259 279 DKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQ 322 (531)
T ss_pred cccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHc
Confidence 45899999999999999999999999999999999999999964
No 31
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=96.52 E-value=0.0021 Score=50.88 Aligned_cols=49 Identities=31% Similarity=0.573 Sum_probs=34.6
Q ss_pred CCCCCHHHHHHHHHHHHH------hC--C------chhhhhccC---C-CCCHHHHHHHHHHhhhhh
Q 039198 68 RGKFSEEEEQLIVNLHAV------LG--N------KWSAIATRL---P-GRTDNEIKNFWNTHLKKK 116 (351)
Q Consensus 68 rg~WT~EED~~Ll~lv~~------~G--~------kW~~IA~~l---p-gRT~~qcr~RW~~~Lr~~ 116 (351)
|-.||.+|...|+.++.. ++ + -|..||..| + .|++.||+.||.++.+..
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Y 67 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKY 67 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 347999999999999877 21 1 299999887 2 799999999999855544
No 32
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=96.42 E-value=0.0048 Score=57.36 Aligned_cols=101 Identities=23% Similarity=0.386 Sum_probs=71.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCCcccccccc--ccccccccccccccccc-CCC--------------------CCCCCCCH
Q 039198 17 PWTPEEDQKLIDYIRKHGHGSWRALPKLA--GLNRCGKSCRLRWTNYL-RPD--------------------IKRGKFSE 73 (351)
Q Consensus 17 ~WT~EED~~L~~~V~k~g~~nW~~IA~~l--gp~Rs~kqCr~Rw~n~L-~p~--------------------lkrg~WT~ 73 (351)
+|++++|-.|+.+|+.-. +-+.|+..+ .-.-|-..+.+||...| +|. ..+-+||.
T Consensus 1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~ 78 (199)
T PF13325_consen 1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK 78 (199)
T ss_pred CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence 699999999999998753 566665432 22345566688998764 332 24568999
Q ss_pred HHHHHHHHHHHHhCC---chhhhhc-----cCCCCCHHHHHHHHHHhhhhhhhc
Q 039198 74 EEEQLIVNLHAVLGN---KWSAIAT-----RLPGRTDNEIKNFWNTHLKKKLLQ 119 (351)
Q Consensus 74 EED~~Ll~lv~~~G~---kW~~IA~-----~lpgRT~~qcr~RW~~~Lr~~ik~ 119 (351)
+|++.|......... .+.+|=. ..++||+++...+|....+..+..
T Consensus 79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL~ 132 (199)
T PF13325_consen 79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLLP 132 (199)
T ss_pred HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchhh
Confidence 999999998766643 3655532 236899999999999766655543
No 33
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=96.30 E-value=0.0014 Score=67.27 Aligned_cols=46 Identities=20% Similarity=0.510 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc
Q 039198 14 KKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 61 (351)
Q Consensus 14 kKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~ 61 (351)
....||.+|-.+|+++|+.||. +|.+||.++| .|+..||..|+.+.
T Consensus 278 ~dk~WS~qE~~LLLEGIe~ygD-dW~kVA~HVg-tKt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYGD-DWDKVARHVG-TKTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHhhh-hHHHHHHHhC-CCCHHHHHHHHHcC
Confidence 6679999999999999999996 9999999998 99999999999864
No 34
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=96.01 E-value=0.0028 Score=66.20 Aligned_cols=49 Identities=20% Similarity=0.520 Sum_probs=44.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc
Q 039198 11 NNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 61 (351)
Q Consensus 11 ~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~ 61 (351)
...-++.||.+|+.+|+++|++||. +|.+||..+| .|+..||..++.+.
T Consensus 249 ~~~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~hVg-~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 249 GESARPNWTEQETLLLLEAIEMYGD-DWNKVADHVG-TKSQEQCILKFLRL 297 (506)
T ss_pred cccCCCCccHHHHHHHHHHHHHhcc-cHHHHHhccC-CCCHHHHHHHHHhc
Confidence 3456889999999999999999996 9999999998 99999999998763
No 35
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=95.88 E-value=0.0082 Score=54.50 Aligned_cols=51 Identities=16% Similarity=0.327 Sum_probs=42.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCc-------hhhhhccCCCCCHHHHHHHHHHhhhhhh
Q 039198 66 IKRGKFSEEEEQLIVNLHAVLGNK-------WSAIATRLPGRTDNEIKNFWNTHLKKKL 117 (351)
Q Consensus 66 lkrg~WT~EED~~Ll~lv~~~G~k-------W~~IA~~lpgRT~~qcr~RW~~~Lr~~i 117 (351)
.+...||.|||.+|.+.|-.|+.. ...++..| +||..+|..||+.++++..
T Consensus 3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Y 60 (170)
T PRK13923 3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQY 60 (170)
T ss_pred chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHH
Confidence 356789999999999999888621 66667777 9999999999999999754
No 36
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=95.85 E-value=0.0021 Score=57.73 Aligned_cols=51 Identities=27% Similarity=0.665 Sum_probs=43.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-C-----CcccccccccccccccccccccccccCCC
Q 039198 13 IKKGPWTPEEDQKLIDYIRKHGH-G-----SWRALPKLAGLNRCGKSCRLRWTNYLRPD 65 (351)
Q Consensus 13 lkKg~WT~EED~~L~~~V~k~g~-~-----nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~ 65 (351)
.+...||.|||.+|-+.|.+|-. | .+.+++..++ ||+.-|.-||..+++..
T Consensus 2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~--RTsAACGFRWNs~VRkq 58 (161)
T TIGR02894 2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN--RTAAACGFRWNAYVRKQ 58 (161)
T ss_pred ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc--ccHHHhcchHHHHHHHH
Confidence 46778999999999999999932 1 4888998886 99999999999988743
No 37
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=95.40 E-value=0.0031 Score=49.84 Aligned_cols=47 Identities=30% Similarity=0.721 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHHHHHHh------C---C----CCcccccccc---cccccccccccccccc
Q 039198 15 KGPWTPEEDQKLIDYIRKH------G---H----GSWRALPKLA---GLNRCGKSCRLRWTNY 61 (351)
Q Consensus 15 Kg~WT~EED~~L~~~V~k~------g---~----~nW~~IA~~l---gp~Rs~kqCr~Rw~n~ 61 (351)
+..||.+|...|++++... + . .-|..||..| |..|++.||+.+|.++
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L 63 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNL 63 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4589999999999998771 1 0 1399999654 6789999999999874
No 38
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=95.27 E-value=0.028 Score=43.62 Aligned_cols=48 Identities=31% Similarity=0.544 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHHHHh-----C--C----------chhhhhccC-----CCCCHHHHHHHHHHhhhh
Q 039198 68 RGKFSEEEEQLIVNLHAVL-----G--N----------KWSAIATRL-----PGRTDNEIKNFWNTHLKK 115 (351)
Q Consensus 68 rg~WT~EED~~Ll~lv~~~-----G--~----------kW~~IA~~l-----pgRT~~qcr~RW~~~Lr~ 115 (351)
+..||.+|...|+++|.+| | . -|..|+..| +.|+..+++.+|.++...
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~ 71 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSK 71 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999887 3 1 299999877 379999999999986553
No 39
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=95.10 E-value=0.019 Score=56.81 Aligned_cols=47 Identities=26% Similarity=0.488 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhh
Q 039198 68 RGKFSEEEEQLIVNLHAVLG-NKWSAIATRLPGRTDNEIKNFWNTHLK 114 (351)
Q Consensus 68 rg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcr~RW~~~Lr 114 (351)
-..|+.+|+..|+++...+| |+|..||.+++.|+...||.+|..+..
T Consensus 63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~ 110 (432)
T COG5114 63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD 110 (432)
T ss_pred CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 34699999999999999999 999999999999999999999876554
No 40
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=94.62 E-value=0.008 Score=46.32 Aligned_cols=52 Identities=29% Similarity=0.534 Sum_probs=32.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCC------C--CcccccccccccccccccccccccccCCCC
Q 039198 15 KGPWTPEEDQKLIDYIRKHGH------G--SWRALPKLAGLNRCGKSCRLRWTNYLRPDI 66 (351)
Q Consensus 15 Kg~WT~EED~~L~~~V~k~g~------~--nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~l 66 (351)
+-+||.|||+.|+++|..+.. | =|.++++.--+.+|..+-|+||...|.+..
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~ 61 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP 61 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 458999999999999976632 2 288888766238999999999999887643
No 41
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=94.10 E-value=0.013 Score=57.86 Aligned_cols=108 Identities=16% Similarity=0.347 Sum_probs=74.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCC-------CCC-CCCCCHHHHHHHHHH---HH
Q 039198 16 GPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRP-------DIK-RGKFSEEEEQLIVNL---HA 84 (351)
Q Consensus 16 g~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p-------~lk-rg~WT~EED~~Ll~l---v~ 84 (351)
--|+.+|+.+|+++++..|.|+|..||..+| .|+...|+.+|..++.. ++. .++-. .|+-|.+- ++
T Consensus 64 e~WgadEEllli~~~~TlGlGNW~dIadyiG-sr~kee~k~HylK~y~es~~ypl~~i~~~~~v~--q~~f~~qrr~rie 140 (432)
T COG5114 64 EGWGADEELLLIECLDTLGLGNWEDIADYIG-SRAKEEIKSHYLKMYDESKYYPLPDITQNIHVP--QDEFLEQRRHRIE 140 (432)
T ss_pred CCcCchHHHHHHHHHHhcCCCcHHHHHHHHh-hhhhHHHHHHHHHHHhhcccccccccccCCCCc--hHHHHHHHHhhhh
Confidence 4699999999999999999999999999998 99999999999987652 221 22222 22222222 22
Q ss_pred HhC-------------CchhhhhccCCCCCHHHHHHHHHHhhhhhhhcCCCCccCcc
Q 039198 85 VLG-------------NKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHR 128 (351)
Q Consensus 85 ~~G-------------~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~~~~t~eEd~ 128 (351)
.+- ..=..|...||||-...+ -|.+--.--++.+.|++..+.
T Consensus 141 ~f~~ppi~prkP~aS~P~cheiqgyMPgRleFd~--EymnEaE~pikDm~fd~d~~e 195 (432)
T COG5114 141 TFELPPINPRKPKASNPYCHEIQGYMPGRLEFDV--EYMNEAEVPIKDMSFDGDKEE 195 (432)
T ss_pred hccCCCCCCCCCCCCCCchhhhhccCCCccccch--hhhhcccccccccccCCchHH
Confidence 221 114678889999987644 345555556777778765544
No 42
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=93.20 E-value=0.024 Score=44.08 Aligned_cols=49 Identities=22% Similarity=0.469 Sum_probs=39.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC----------------CCcccccccc----ccccccccccccccccc
Q 039198 14 KKGPWTPEEDQKLIDYIRKHGH----------------GSWRALPKLA----GLNRCGKSCRLRWTNYL 62 (351)
Q Consensus 14 kKg~WT~EED~~L~~~V~k~g~----------------~nW~~IA~~l----gp~Rs~kqCr~Rw~n~L 62 (351)
++..||.+|.+.|+++|.+|.. .-|..|+..+ +..|+..+|+.+|.++.
T Consensus 1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk 69 (78)
T PF13873_consen 1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK 69 (78)
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 4678999999999999998832 1499998644 23799999999998753
No 43
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=93.19 E-value=0.018 Score=52.36 Aligned_cols=50 Identities=22% Similarity=0.541 Sum_probs=40.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCC------CcccccccccccccccccccccccccCC
Q 039198 13 IKKGPWTPEEDQKLIDYIRKHGHG------SWRALPKLAGLNRCGKSCRLRWTNYLRP 64 (351)
Q Consensus 13 lkKg~WT~EED~~L~~~V~k~g~~------nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p 64 (351)
.+...||.|||.+|-+.|.+|+.. ....++..++ |++..|..||..+++.
T Consensus 3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~--rt~aac~fRwNs~vrk 58 (170)
T PRK13923 3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALK--RTAAACGFRWNSVVRK 58 (170)
T ss_pred chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh--hhHHHHHhHHHHHHHH
Confidence 567899999999999999999643 2555666665 9999999999777663
No 44
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=91.38 E-value=0.26 Score=55.98 Aligned_cols=100 Identities=15% Similarity=0.332 Sum_probs=73.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccc-------ccccc---------------------------
Q 039198 16 GPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRL-------RWTNY--------------------------- 61 (351)
Q Consensus 16 g~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~-------Rw~n~--------------------------- 61 (351)
..|+.-+=..++.++.+||..+-..||..++ +++...++. ||...
T Consensus 825 ~~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~-~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~ 903 (1033)
T PLN03142 825 STWSRRDFNAFIRACEKYGRNDIKSIASEME-GKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAI 903 (1033)
T ss_pred CcccHHHHHHHHHHHHHhCHhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588888888888999999888889998884 566666531 11110
Q ss_pred ---------------cC-CCCCCCCCCHHHHHHHHHHHHHhC-Cchhhhhcc------------CCCCCHHHHHHHHHHh
Q 039198 62 ---------------LR-PDIKRGKFSEEEEQLIVNLHAVLG-NKWSAIATR------------LPGRTDNEIKNFWNTH 112 (351)
Q Consensus 62 ---------------L~-p~lkrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~------------lpgRT~~qcr~RW~~~ 112 (351)
+. +.-++..+|.|||..|+-.+.+|| ++|..|-.. +..||...+..|...+
T Consensus 904 ~~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l 983 (1033)
T PLN03142 904 GKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTL 983 (1033)
T ss_pred HHHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHH
Confidence 00 222344599999999999999999 789998432 2579999999999887
Q ss_pred hhhh
Q 039198 113 LKKK 116 (351)
Q Consensus 113 Lr~~ 116 (351)
++-.
T Consensus 984 ~~~~ 987 (1033)
T PLN03142 984 IRLI 987 (1033)
T ss_pred HHHH
Confidence 7654
No 45
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=88.03 E-value=0.76 Score=45.53 Aligned_cols=49 Identities=22% Similarity=0.390 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHHHHHHh----------CCchhhhhccC----CCCCHHHHHHHHHHhhhhh
Q 039198 68 RGKFSEEEEQLIVNLHAVL----------GNKWSAIATRL----PGRTDNEIKNFWNTHLKKK 116 (351)
Q Consensus 68 rg~WT~EED~~Ll~lv~~~----------G~kW~~IA~~l----pgRT~~qcr~RW~~~Lr~~ 116 (351)
...|+.+|-..||.+.... +..|..||..+ --|++.+||.+|.++.++.
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Y 116 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKY 116 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 3689999999999998643 23499999865 2699999999999876654
No 46
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=87.91 E-value=1.1 Score=35.69 Aligned_cols=45 Identities=27% Similarity=0.527 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHHHh---C-----C-----chhhhhccC---C--CCCHHHHHHHHHHhhh
Q 039198 70 KFSEEEEQLIVNLHAVL---G-----N-----KWSAIATRL---P--GRTDNEIKNFWNTHLK 114 (351)
Q Consensus 70 ~WT~EED~~Ll~lv~~~---G-----~-----kW~~IA~~l---p--gRT~~qcr~RW~~~Lr 114 (351)
.||+++++.|++++.+. | + .|..|+..| + ..+..||++||..+-+
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~ 63 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK 63 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence 59999999999998543 2 1 189998877 2 3578999999875443
No 47
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=86.46 E-value=0.98 Score=45.93 Aligned_cols=47 Identities=21% Similarity=0.321 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhh
Q 039198 69 GKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKK 115 (351)
Q Consensus 69 g~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~Lr~ 115 (351)
.+||.+|-++..++...+|..+..||..+|.|..+|++.+|.+--+.
T Consensus 366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~ 412 (507)
T COG5118 366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKV 412 (507)
T ss_pred CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhh
Confidence 36999999999999999999999999999999999999999764443
No 48
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=85.24 E-value=1.3 Score=37.94 Aligned_cols=51 Identities=27% Similarity=0.476 Sum_probs=39.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC----chhhhhccC------------CCCCHHHHHHHHHHhhhh
Q 039198 65 DIKRGKFSEEEEQLIVNLHAVLGN----KWSAIATRL------------PGRTDNEIKNFWNTHLKK 115 (351)
Q Consensus 65 ~lkrg~WT~EED~~Ll~lv~~~G~----kW~~IA~~l------------pgRT~~qcr~RW~~~Lr~ 115 (351)
.-++..||.|||.-|+-.+.+||- .|..|-..+ ..||...+..|...+++-
T Consensus 46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~ 112 (118)
T PF09111_consen 46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKL 112 (118)
T ss_dssp TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHH
Confidence 455678999999999999999995 598886432 469999999999877764
No 49
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=80.08 E-value=1.4 Score=37.90 Aligned_cols=35 Identities=31% Similarity=0.481 Sum_probs=29.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC---CCcccccccc
Q 039198 11 NNIKKGPWTPEEDQKLIDYIRKHGH---GSWRALPKLA 45 (351)
Q Consensus 11 ~~lkKg~WT~EED~~L~~~V~k~g~---~nW~~IA~~l 45 (351)
+.-++..||.|||.-|+-++.+||. +.|..|...+
T Consensus 45 ~~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~I 82 (118)
T PF09111_consen 45 PNNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEI 82 (118)
T ss_dssp STSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHH
T ss_pred CCCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence 3677899999999999999999999 8999997655
No 50
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=76.89 E-value=2.9 Score=42.73 Aligned_cols=50 Identities=24% Similarity=0.351 Sum_probs=43.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCchhhhhcc-----CC-CCCHHHHHHHHHHhhhhhhh
Q 039198 69 GKFSEEEEQLIVNLHAVLGNKWSAIATR-----LP-GRTDNEIKNFWNTHLKKKLL 118 (351)
Q Consensus 69 g~WT~EED~~Ll~lv~~~G~kW~~IA~~-----lp-gRT~~qcr~RW~~~Lr~~ik 118 (351)
..||.||-+-|.++++.|--+|.-||-. ++ .||-...++||+..-+.-++
T Consensus 131 n~WskeETD~LF~lck~fDLRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~k 186 (445)
T KOG2656|consen 131 NSWSKEETDYLFDLCKRFDLRFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLK 186 (445)
T ss_pred ccccHHHHHHHHHHHHhcCeeEEEEeeccchhhccccccHHHHHHHHHHHHHHHHH
Confidence 5699999999999999999999999976 56 49999999999987776543
No 51
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=72.86 E-value=1.7 Score=44.30 Aligned_cols=47 Identities=17% Similarity=0.276 Sum_probs=42.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccc
Q 039198 12 NIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTN 60 (351)
Q Consensus 12 ~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n 60 (351)
+..--+|+.+|-+++..+...+|. ++..|+..+ |+|..+|+...|.+
T Consensus 362 ~~~~~~Ws~~e~ekFYKALs~wGt-dF~LIs~lf-P~R~RkqIKaKfi~ 408 (507)
T COG5118 362 KKGALRWSKKEIEKFYKALSIWGT-DFSLISSLF-PNRERKQIKAKFIK 408 (507)
T ss_pred CCCCCcccHHHHHHHHHHHHHhcc-hHHHHHHhc-CchhHHHHHHHHHH
Confidence 445568999999999999999997 999999988 89999999999876
No 52
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=71.00 E-value=6 Score=43.44 Aligned_cols=45 Identities=11% Similarity=0.180 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHh
Q 039198 68 RGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTH 112 (351)
Q Consensus 68 rg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~ 112 (351)
...||+.|-.+.-+++..|..++..|++.++++|-.+|-..|+..
T Consensus 619 Sd~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCVeyYYtW 663 (907)
T KOG4167|consen 619 SDKWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCVEYYYTW 663 (907)
T ss_pred cccccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHHHHHHHH
Confidence 347999999999999999999999999999999999999987653
No 53
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=70.43 E-value=8.5 Score=27.34 Aligned_cols=41 Identities=24% Similarity=0.292 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhh
Q 039198 73 EEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLK 114 (351)
Q Consensus 73 ~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~Lr 114 (351)
++++..++.++...|-.|..||..+ |.+...|+.+....++
T Consensus 12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~ 52 (54)
T PF08281_consen 12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARK 52 (54)
T ss_dssp -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHh
Confidence 5677888888888899999999999 9999999988766544
No 54
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=70.16 E-value=7 Score=40.79 Aligned_cols=47 Identities=17% Similarity=0.352 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhh
Q 039198 68 RGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLK 114 (351)
Q Consensus 68 rg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~Lr 114 (351)
...||.||--++-++...||.++.+|-+.||.|+-.++...|+..-+
T Consensus 187 ~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK 233 (534)
T KOG1194|consen 187 PDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKK 233 (534)
T ss_pred cccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHH
Confidence 35799999999999999999999999999999999999988865443
No 55
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=69.94 E-value=1.5 Score=43.43 Aligned_cols=47 Identities=23% Similarity=0.441 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHHHHHh----C-----CCCcccccc---ccccccccccccccccccc
Q 039198 16 GPWTPEEDQKLIDYIRKH----G-----HGSWRALPK---LAGLNRCGKSCRLRWTNYL 62 (351)
Q Consensus 16 g~WT~EED~~L~~~V~k~----g-----~~nW~~IA~---~lgp~Rs~kqCr~Rw~n~L 62 (351)
..|+.+|-..|+.+..+. . ..-|..||+ ..|..|++.||+.+|.++.
T Consensus 55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~ 113 (345)
T KOG4282|consen 55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLK 113 (345)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 789999999999887543 1 125999996 4567899999999998743
No 56
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=64.48 E-value=4.3 Score=44.52 Aligned_cols=44 Identities=14% Similarity=0.255 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccc
Q 039198 15 KGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTN 60 (351)
Q Consensus 15 Kg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n 60 (351)
...||+.|..++.+++-.|.. ++-.|++++ ++++.+||-+-|..
T Consensus 619 Sd~WTp~E~~lF~kA~y~~~K-DF~~v~km~-~~KtVaqCVeyYYt 662 (907)
T KOG4167|consen 619 SDKWTPLERKLFNKALYTYSK-DFIFVQKMV-KSKTVAQCVEYYYT 662 (907)
T ss_pred cccccHHHHHHHHHHHHHhcc-cHHHHHHHh-ccccHHHHHHHHHH
Confidence 357999999999999999975 999999999 79999999887754
No 57
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=64.33 E-value=6.5 Score=31.53 Aligned_cols=24 Identities=46% Similarity=0.832 Sum_probs=14.0
Q ss_pred CCCCCCCCCHHHHHHHH--------HHHHHhC
Q 039198 11 NNIKKGPWTPEEDQKLI--------DYIRKHG 34 (351)
Q Consensus 11 ~~lkKg~WT~EED~~L~--------~~V~k~g 34 (351)
|.--.|-||+|+|+.|. .++++||
T Consensus 43 P~n~~GiWT~eDD~~L~~~~~~~~~~L~~khG 74 (87)
T PF11626_consen 43 PDNMPGIWTPEDDEMLRSGDKDDIERLIKKHG 74 (87)
T ss_dssp -TT-TT---HHHHHHHTS--HHHHHHHHHHH-
T ss_pred CCCCCCCcCHHHHHHHHcCCHHHHHHHHHHhC
Confidence 44558899999999993 5667786
No 58
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=62.04 E-value=15 Score=39.61 Aligned_cols=57 Identities=11% Similarity=0.387 Sum_probs=45.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhhhc----------cCCCCCHHHHHHHHHHhhhhhhhcCCCCcc
Q 039198 68 RGKFSEEEEQLIVNLHAVLGNKWSAIAT----------RLPGRTDNEIKNFWNTHLKKKLLQMGIDPV 125 (351)
Q Consensus 68 rg~WT~EED~~Ll~lv~~~G~kW~~IA~----------~lpgRT~~qcr~RW~~~Lr~~ik~~~~t~e 125 (351)
|..||..|++-...++.++|.++.+|-+ ...-+|..|+|.+|+..+++.-+-. |.++
T Consensus 88 ktaWt~~E~~~Ffdal~~~GKdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~k~~-F~~~ 154 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVGKDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMNKLL-FGPD 154 (782)
T ss_pred ccccchhhHHHHHHHHHHhcccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHhhh-cccc
Confidence 5679999999999999999999999832 2234577999999998888776554 5553
No 59
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=61.03 E-value=8.3 Score=30.94 Aligned_cols=17 Identities=24% Similarity=0.601 Sum_probs=10.1
Q ss_pred CCCCCCCCCHHHHHHHH
Q 039198 64 PDIKRGKFSEEEEQLIV 80 (351)
Q Consensus 64 p~lkrg~WT~EED~~Ll 80 (351)
|.-..|-||+|+|+.|.
T Consensus 43 P~n~~GiWT~eDD~~L~ 59 (87)
T PF11626_consen 43 PDNMPGIWTPEDDEMLR 59 (87)
T ss_dssp -TT-TT---HHHHHHHT
T ss_pred CCCCCCCcCHHHHHHHH
Confidence 55668899999999993
No 60
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=60.09 E-value=16 Score=34.30 Aligned_cols=44 Identities=20% Similarity=0.320 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHHHHhCCchhhhhccCC---CCCHHHHHHHHHHhhh
Q 039198 70 KFSEEEEQLIVNLHAVLGNKWSAIATRLP---GRTDNEIKNFWNTHLK 114 (351)
Q Consensus 70 ~WT~EED~~Ll~lv~~~G~kW~~IA~~lp---gRT~~qcr~RW~~~Lr 114 (351)
+|++++|-.|+.+|. .|++-..|+..++ .-|-..+..||+.+|-
T Consensus 1 rW~~~DDl~Li~av~-~~~~L~~v~~gvkFS~~fT~~Ei~~RW~~lly 47 (199)
T PF13325_consen 1 RWKPEDDLLLINAVE-QTNDLESVHLGVKFSCKFTLQEIEERWYALLY 47 (199)
T ss_pred CCCchhhHHHHHHHH-HhcCHHHHHccCCcCCcCcHHHHHHHHHHHHc
Confidence 599999999999985 4666777766553 4588999999998773
No 61
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=56.78 E-value=2.8 Score=29.31 Aligned_cols=38 Identities=24% Similarity=0.401 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhCCCCccccccccccccccccccccccc
Q 039198 21 EEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTN 60 (351)
Q Consensus 21 EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n 60 (351)
+=|.+|+.+.++.+...|.+||+.+| -++..|..|+..
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~lg--lS~~~v~~Ri~r 40 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEELG--LSESTVRRRIRR 40 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHHHT--S-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHC--cCHHHHHHHHHH
Confidence 45889999999999889999999997 888888888654
No 62
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=56.62 E-value=14 Score=32.33 Aligned_cols=46 Identities=9% Similarity=0.136 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhhhhhhc
Q 039198 73 EEEEQLIVNLHAVLG-NKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQ 119 (351)
Q Consensus 73 ~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~ 119 (351)
.+-|.+|+.+.++-| -.|..||+.+ |-+...|+.|+.......+.+
T Consensus 8 D~~D~~Il~~Lq~d~R~s~~eiA~~l-glS~~tV~~Ri~rL~~~GvI~ 54 (153)
T PRK11179 8 DNLDRGILEALMENARTPYAELAKQF-GVSPGTIHVRVEKMKQAGIIT 54 (153)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 367899999999998 6799999999 999999999999887776554
No 63
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=53.41 E-value=12 Score=43.41 Aligned_cols=75 Identities=24% Similarity=0.313 Sum_probs=53.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCcccccc--cccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHh-CCch
Q 039198 14 KKGPWTPEEDQKLIDYIRKHGHGSWRALPK--LAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIVNLHAVL-GNKW 90 (351)
Q Consensus 14 kKg~WT~EED~~L~~~V~k~g~~nW~~IA~--~lgp~Rs~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~-G~kW 90 (351)
.---|..+||..|+-.|-+||.++|..|-. .++ =+.+ ..+...+-.+.|=..+-..|+.++..+ +.+|
T Consensus 1132 ~~~~W~~e~Ds~LLiGI~khGygswe~Ir~Dp~L~--l~dK-------i~~~e~~P~a~~L~~R~~yLls~~~~~~~~~~ 1202 (1373)
T KOG0384|consen 1132 WDCDWGSEDDSMLLIGIFKHGYGSWEAIRLDPDLG--LTDK-------IFLVETVPQAKHLQRRADYLLSLLRKHDKGNT 1202 (1373)
T ss_pred cccCCCchhhhhHhhhhhhcccccHHHhccCcccc--chhh-------hcccccCCchHHHHHHHHHHHHHHhhcccCCC
Confidence 455799999999999999999999999953 222 1111 111222456678888888899998888 6778
Q ss_pred hhhhccC
Q 039198 91 SAIATRL 97 (351)
Q Consensus 91 ~~IA~~l 97 (351)
.+.++..
T Consensus 1203 ~~~~~~~ 1209 (1373)
T KOG0384|consen 1203 PKKLKRE 1209 (1373)
T ss_pred chhhhcc
Confidence 7766544
No 64
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=53.38 E-value=3.9 Score=35.86 Aligned_cols=46 Identities=13% Similarity=0.210 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCC
Q 039198 20 PEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIK 67 (351)
Q Consensus 20 ~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lk 67 (351)
.+-|.+|+.+.++.|.-.|.+||+.+| -+...|+.|+.+....++-
T Consensus 8 D~~D~~Il~~Lq~d~R~s~~eiA~~lg--lS~~tV~~Ri~rL~~~GvI 53 (153)
T PRK11179 8 DNLDRGILEALMENARTPYAELAKQFG--VSPGTIHVRVEKMKQAGII 53 (153)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCe
Confidence 467999999999999889999999997 9999999999887766543
No 65
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=51.98 E-value=26 Score=27.71 Aligned_cols=38 Identities=18% Similarity=0.317 Sum_probs=28.7
Q ss_pred HHHHHHHHhCC--------chhhhhccCCC-C--C--HHHHHHHHHHhhhh
Q 039198 78 LIVNLHAVLGN--------KWSAIATRLPG-R--T--DNEIKNFWNTHLKK 115 (351)
Q Consensus 78 ~Ll~lv~~~G~--------kW~~IA~~lpg-R--T--~~qcr~RW~~~Lr~ 115 (351)
+|..+|...|| +|..||..|+- . + ..+++..|..+|.+
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~~L~~~Y~~~L~~ 90 (92)
T PF01388_consen 40 KLYKAVMKRGGFDKVTKNKKWREVARKLGFPPSSTSAAQQLRQHYEKYLLP 90 (92)
T ss_dssp HHHHHHHHHTSHHHHHHHTTHHHHHHHTTS-TTSCHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHhCcCcccCcccchHHHHHHHhCCCCCCCcHHHHHHHHHHHHhHh
Confidence 47788888885 49999999942 1 1 36788889888865
No 66
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=51.74 E-value=29 Score=24.20 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHH
Q 039198 74 EEEQLIVNLHAVLG-NKWSAIATRLPGRTDNEIKNFWNT 111 (351)
Q Consensus 74 EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcr~RW~~ 111 (351)
+=|.+|+.+...-| -.|..||+.+ |=+...|..|+..
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~l-glS~~~v~~Ri~r 40 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEEL-GLSESTVRRRIRR 40 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHHH-TS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHH-CcCHHHHHHHHHH
Confidence 45889999999988 5699999999 9999999999864
No 67
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=51.05 E-value=3.8 Score=36.40 Aligned_cols=46 Identities=22% Similarity=0.252 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCC
Q 039198 20 PEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIK 67 (351)
Q Consensus 20 ~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lk 67 (351)
.+-|.+|+.+.++.|.-.|.+||+.+| -+...|+.|+.+..+.++-
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~lg--lS~~tv~~Ri~rL~~~GvI 58 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRVG--LSPTPCLERVRRLERQGFI 58 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCe
Confidence 567999999999999889999999997 8889999999987766553
No 68
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=50.64 E-value=8.6 Score=30.42 Aligned_cols=44 Identities=32% Similarity=0.736 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHHHHh---CC----C-----Ccccccccc----ccccccccccccccc
Q 039198 17 PWTPEEDQKLIDYIRKH---GH----G-----SWRALPKLA----GLNRCGKSCRLRWTN 60 (351)
Q Consensus 17 ~WT~EED~~L~~~V~k~---g~----~-----nW~~IA~~l----gp~Rs~kqCr~Rw~n 60 (351)
.||+++++.|++++... |. + .|..|++.+ |...+..||+.||..
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~ 60 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKT 60 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHH
Confidence 59999999999988554 21 1 377777544 344556667776654
No 69
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=49.95 E-value=18 Score=31.98 Aligned_cols=46 Identities=13% Similarity=0.100 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhhhhhhc
Q 039198 73 EEEEQLIVNLHAVLG-NKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQ 119 (351)
Q Consensus 73 ~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~ 119 (351)
.+-|.+|+.+.++-| -.|..||+.+ |=+...|+.|+..+.+..+.+
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~l-glS~~tv~~Ri~rL~~~GvI~ 59 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRV-GLSPTPCLERVRRLERQGFIQ 59 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 567899999999888 6699999999 999999999999887776544
No 70
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=44.59 E-value=37 Score=27.16 Aligned_cols=40 Identities=20% Similarity=0.269 Sum_probs=29.9
Q ss_pred HHHHHHHHHhCC--------chhhhhccCCCC-----CHHHHHHHHHHhhhhh
Q 039198 77 QLIVNLHAVLGN--------KWSAIATRLPGR-----TDNEIKNFWNTHLKKK 116 (351)
Q Consensus 77 ~~Ll~lv~~~G~--------kW~~IA~~lpgR-----T~~qcr~RW~~~Lr~~ 116 (351)
-+|..+|.+.|| .|..||..|+-. ...+++..|..+|.+.
T Consensus 35 ~~Ly~~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L~~y 87 (93)
T smart00501 35 YRLYRLVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYLLPF 87 (93)
T ss_pred HHHHHHHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHhHHH
Confidence 347778888875 499999988422 3577888888888764
No 71
>smart00595 MADF subfamily of SANT domain.
Probab=42.99 E-value=18 Score=28.29 Aligned_cols=25 Identities=32% Similarity=0.626 Sum_probs=20.8
Q ss_pred hhhhhccCCCCCHHHHHHHHHHhhhh
Q 039198 90 WSAIATRLPGRTDNEIKNFWNTHLKK 115 (351)
Q Consensus 90 W~~IA~~lpgRT~~qcr~RW~~~Lr~ 115 (351)
|..||..| |-+...|+.+|.++-..
T Consensus 30 W~~Ia~~l-~~~~~~~~~kw~~LR~~ 54 (89)
T smart00595 30 WEEIAEEL-GLSVEECKKRWKNLRDR 54 (89)
T ss_pred HHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 99999999 55999999999865433
No 72
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=42.21 E-value=47 Score=23.21 Aligned_cols=41 Identities=27% Similarity=0.403 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhh
Q 039198 74 EEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKK 115 (351)
Q Consensus 74 EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~Lr~ 115 (351)
+++..++.+.--.|-.+..||..+ |-+...|+.+-...+++
T Consensus 7 ~~er~vi~~~y~~~~t~~eIa~~l-g~s~~~V~~~~~~al~k 47 (50)
T PF04545_consen 7 PREREVIRLRYFEGLTLEEIAERL-GISRSTVRRILKRALKK 47 (50)
T ss_dssp HHHHHHHHHHHTST-SHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHH-CCcHHHHHHHHHHHHHH
Confidence 455566666655566799999999 88888888877665543
No 73
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=40.86 E-value=34 Score=36.90 Aligned_cols=46 Identities=22% Similarity=0.374 Sum_probs=42.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHH
Q 039198 66 IKRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNT 111 (351)
Q Consensus 66 lkrg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~ 111 (351)
...++|+.+|-++........|.+.+.||..+|+|..+++|.++..
T Consensus 407 ~~~~~w~~se~e~fyka~~~~gs~~slis~l~p~R~rk~iK~K~~~ 452 (584)
T KOG2009|consen 407 LETDKWDASETELFYKALSERGSDFSLISNLFPLRDRKQIKAKFKK 452 (584)
T ss_pred cccCcccchhhHHhhhHHhhhcccccccccccccccHHHHHHHHhh
Confidence 3457899999999999999999999999999999999999998864
No 74
>PF05476 PET122: PET122; InterPro: IPR008732 The nuclear PET122 gene of Saccharomyces cerevisiae encodes a mitochondrial-localised protein that activates initiation of translation of the mitochondrial mRNA from the COX3 gene, which encodes subunit III of cytochrome c oxidase [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005740 mitochondrial envelope
Probab=34.13 E-value=1.6e+02 Score=28.95 Aligned_cols=127 Identities=13% Similarity=0.129 Sum_probs=78.5
Q ss_pred cccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhhhhhcCCC----Ccc
Q 039198 50 CGKSCRLRWTNYLRPDIKRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGI----DPV 125 (351)
Q Consensus 50 s~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~~~~----t~e 125 (351)
-+.|+..+|..+...+...+.|..-|-+.|.--|+.|.. . .-....-+.+|+..|.-.-..-+- .-.
T Consensus 98 ip~ql~~hy~~~y~~~~~~~e~~~~~YeLlRikVE~FAk-------g--t~~~t~F~EKWkvfLedmDn~Lp~~~~frVR 168 (267)
T PF05476_consen 98 IPSQLYMHYQKFYGKGTSQPEWDQYEYELLRIKVESFAK-------G--TMHKTTFREKWKVFLEDMDNTLPPQYPFRVR 168 (267)
T ss_pred CHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHHHHhc-------C--CcccchHHHHHHHHHHHHhccCCCCCceeec
Confidence 455667777776554443467888888888777766531 1 112445688898877654433222 111
Q ss_pred CcchhhhHHHHhCCCchHHhhhccCCCCCCCCCCccch----hhhhhhhhHHHHHHHHHHHHHHHhh
Q 039198 126 THRPRTDLNNVLANLPQLLAAANFAVGNLMNVPNSWDI----NALKLQSDATQLAKIQLLHNIIQIL 188 (351)
Q Consensus 126 Ed~~l~~l~~~~Gn~w~~Ia~~~~~grt~~~~~n~wn~----~~~~lq~~a~~~~k~~~l~~~lq~~ 188 (351)
+=.-+++. ..|..-..++..++ ++....|+|.|.. ++.-||....--.|+.+++.+++.-
T Consensus 169 DFP~Lt~S--l~~~d~~~l~~~Lf-~~~~i~IkN~~tlpLLLNmiLlQ~~~~~~~Ki~lF~~F~~~~ 232 (267)
T PF05476_consen 169 DFPYLTKS--LNQTDEDTLAKLLF-TDNKITIKNPSTLPLLLNMILLQPEFSLDFKIRLFKRFLESH 232 (267)
T ss_pred ccHHHHHH--HhcccHHHHHHHHh-hcCCccccCCCcHHHHHHHHHcCCCCChHHHHHHHHHHHHhc
Confidence 11122222 23455566788888 7888889999985 3334676667778999999988743
No 75
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=33.70 E-value=83 Score=28.06 Aligned_cols=47 Identities=21% Similarity=0.225 Sum_probs=38.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchhhhhccCC----CCCHHHHHHHHHHhh
Q 039198 67 KRGKFSEEEEQLIVNLHAVLGNKWSAIATRLP----GRTDNEIKNFWNTHL 113 (351)
Q Consensus 67 krg~WT~EED~~Ll~lv~~~G~kW~~IA~~lp----gRT~~qcr~RW~~~L 113 (351)
....-|..|..-|..||++||.++..+|.-.. ..|..||+.+...+.
T Consensus 113 ~~~~ls~~e~~~i~~Li~KhGdDy~aMarD~KLN~~Q~T~~qlrrki~~~k 163 (164)
T PF09420_consen 113 KPRRLSEREIEYIEYLIEKHGDDYKAMARDRKLNYMQHTPGQLRRKIRKYK 163 (164)
T ss_pred CCCCCCHHHHHHHHHHHHHHCccHHHHhccCCCCcccCCHHHHHHHHHHhc
Confidence 34568899999999999999999999985432 689999998876653
No 76
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=33.59 E-value=24 Score=36.36 Aligned_cols=49 Identities=14% Similarity=0.302 Sum_probs=41.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCccccccc-----ccccccccccccccccc
Q 039198 12 NIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKL-----AGLNRCGKSCRLRWTNY 61 (351)
Q Consensus 12 ~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~-----lgp~Rs~kqCr~Rw~n~ 61 (351)
.+.-..||+||-+-|.+++++|.- .|--||.. .+..||...+.+||...
T Consensus 127 ~l~dn~WskeETD~LF~lck~fDL-Rf~VIaDRyd~qq~~~sRTvEdLKeRyY~v 180 (445)
T KOG2656|consen 127 HLNDNSWSKEETDYLFDLCKRFDL-RFFVIADRYDNQQYKKSRTVEDLKERYYSV 180 (445)
T ss_pred hhccccccHHHHHHHHHHHHhcCe-eEEEEeeccchhhccccccHHHHHHHHHHH
Confidence 455578999999999999999986 89999865 55459999999999754
No 77
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=33.19 E-value=30 Score=37.52 Aligned_cols=48 Identities=17% Similarity=0.360 Sum_probs=34.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccccccccc---------cccccccccccccccc
Q 039198 14 KKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAG---------LNRCGKSCRLRWTNYL 62 (351)
Q Consensus 14 kKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lg---------p~Rs~kqCr~Rw~n~L 62 (351)
+|..||..|..-+.+++..+|. ++++|-..+- .-++-.|.|++|.+.+
T Consensus 87 ~ktaWt~~E~~~Ffdal~~~GK-dFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~ 143 (782)
T KOG4468|consen 87 AKTAWTHQEEESFFDALRQVGK-DFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLV 143 (782)
T ss_pred cccccchhhHHHHHHHHHHhcc-cHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHH
Confidence 3668999999999999999996 8988822111 1345556777776543
No 78
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=33.17 E-value=66 Score=33.06 Aligned_cols=42 Identities=21% Similarity=0.347 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCchhhh-hccCCCCCHHHHHHHHH
Q 039198 69 GKFSEEEEQLIVNLHAVLGNKWSAI-ATRLPGRTDNEIKNFWN 110 (351)
Q Consensus 69 g~WT~EED~~Ll~lv~~~G~kW~~I-A~~lpgRT~~qcr~RW~ 110 (351)
..|+.+|=...-+.++.||.++..| +.+++.|+-..|-..|+
T Consensus 278 ~~wsEeEcr~FEegl~~yGKDF~lIr~nkvrtRsvgElVeyYY 320 (445)
T KOG4329|consen 278 SGWSEEECRNFEEGLELYGKDFHLIRANKVRTRSVGELVEYYY 320 (445)
T ss_pred ccCCHHHHHHHHHHHHHhcccHHHHHhcccccchHHHHHHHHH
Confidence 3699999999999999999999999 56778999999998874
No 79
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=32.59 E-value=1.3e+02 Score=30.40 Aligned_cols=48 Identities=29% Similarity=0.563 Sum_probs=36.4
Q ss_pred CCCCCHHHHHHHHHHHHHh-CCc---hhhhhccCCCCCHHHHHHHHHHhhhhh
Q 039198 68 RGKFSEEEEQLIVNLHAVL-GNK---WSAIATRLPGRTDNEIKNFWNTHLKKK 116 (351)
Q Consensus 68 rg~WT~EED~~Ll~lv~~~-G~k---W~~IA~~lpgRT~~qcr~RW~~~Lr~~ 116 (351)
-..||.-|...|+++.... |.. -..|++.++||+..+|++.-. .|+.+
T Consensus 21 p~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~~l~~Rs~aEI~~fl~-~LK~r 72 (344)
T PF11035_consen 21 PAAWSAREKRQLLRLLQARRGQPEPDAAELAKELPGRSEAEIRDFLQ-QLKGR 72 (344)
T ss_pred cccCcHHHHHHHHHHHHHhcCCCCcCHHHHHhhccCcCHHHHHHHHH-HHHHH
Confidence 3469999999999888765 533 567888999999999988654 34443
No 80
>TIGR02985 Sig70_bacteroi1 RNA polymerase sigma-70 factor, Bacteroides expansion family 1. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.
Probab=32.39 E-value=71 Score=26.65 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=25.9
Q ss_pred HHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhh
Q 039198 79 IVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLK 114 (351)
Q Consensus 79 Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~Lr 114 (351)
++.+....|-.+..||..+ |.+...++.+....++
T Consensus 121 il~l~~~~~~~~~eIA~~l-gis~~tv~~~~~ra~~ 155 (161)
T TIGR02985 121 IFILSRFEGKSYKEIAEEL-GISVKTVEYHISKALK 155 (161)
T ss_pred HHHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 3333334467899999998 8899999999876544
No 81
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=32.22 E-value=59 Score=27.37 Aligned_cols=46 Identities=15% Similarity=0.221 Sum_probs=32.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 039198 13 IKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62 (351)
Q Consensus 13 lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L 62 (351)
.++..||.|+-..++..+...|. .=..||+.+|. ..+-..+|.+.+
T Consensus 8 ~~rr~ys~EfK~~aV~~~~~~g~-sv~evA~e~gI---s~~tl~~W~r~y 53 (121)
T PRK09413 8 EKRRRRTTQEKIAIVQQSFEPGM-TVSLVARQHGV---AASQLFLWRKQY 53 (121)
T ss_pred CCCCCCCHHHHHHHHHHHHcCCC-CHHHHHHHHCc---CHHHHHHHHHHH
Confidence 34688999998888887777664 67788888873 334455676654
No 82
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=30.66 E-value=32 Score=39.66 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=29.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCcccccccc
Q 039198 12 NIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLA 45 (351)
Q Consensus 12 ~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~l 45 (351)
.-++..||.|||.-|+-.+.+||.++|.+|-..+
T Consensus 923 ~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i 956 (1033)
T PLN03142 923 QNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAF 956 (1033)
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3456679999999999999999999999997655
No 83
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=30.23 E-value=49 Score=29.76 Aligned_cols=40 Identities=23% Similarity=0.244 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHH
Q 039198 70 KFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWN 110 (351)
Q Consensus 70 ~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~ 110 (351)
.||+|+.++|.+|. .-|-.=+.||..|++.|.+.|.-+-+
T Consensus 2 ~Wtde~~~~L~~lw-~~G~SasqIA~~lg~vsRnAViGk~h 41 (162)
T PF07750_consen 2 SWTDERVERLRKLW-AEGLSASQIARQLGGVSRNAVIGKAH 41 (162)
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHhCCcchhhhhhhhh
Confidence 59999999999888 45777899999997788888766543
No 84
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=28.50 E-value=1e+02 Score=24.75 Aligned_cols=45 Identities=11% Similarity=0.136 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhhhhhhc
Q 039198 74 EEEQLIVNLHAVLG-NKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQ 119 (351)
Q Consensus 74 EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~ 119 (351)
+.|.+|+.+....| -.+..||+.+ |-+...|+.|........+.+
T Consensus 3 ~~D~~il~~L~~~~~~~~~~la~~l-~~s~~tv~~~l~~L~~~g~i~ 48 (108)
T smart00344 3 EIDRKILEELQKDARISLAELAKKV-GLSPSTVHNRVKRLEEEGVIK 48 (108)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 57889999998888 5699999999 999999999998877765544
No 85
>cd08803 Death_ank3 Death domain of Ankyrin-3. Death Domain (DD) of the human protein ankyrin-3 (ANK-3) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-3, also called anykyrin-G (for general or giant), is found in neurons and at least one splice variant has been shown to be essential for propagation of action potentials as a binding partner to neurofascin and voltage-gated sodium channels. It is required for maintaining axo-dendritic polarity, and may be a genetic risk factor associated with bipolar disorder. ANK-3 may also play roles in other cell types. Mutations affecting ANK-3 pathways for Na channel localization are associated with Brugada syndrome, a potentially fata arrythmia. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=26.48 E-value=80 Score=25.36 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhCCchhhhhccCCCCCHHHH
Q 039198 76 EQLIVNLHAVLGNKWSAIATRLPGRTDNEI 105 (351)
Q Consensus 76 D~~Ll~lv~~~G~kW~~IA~~lpgRT~~qc 105 (351)
|.+|..+....|.+|..+|..| |=+...+
T Consensus 4 d~~l~~ia~~LG~dW~~LA~eL-g~s~~dI 32 (84)
T cd08803 4 DIRMAIVADHLGLSWTELAREL-NFSVDEI 32 (84)
T ss_pred HHHHHHHHHHhhccHHHHHHHc-CCCHHHH
Confidence 6778888899999999999999 4444433
No 86
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=26.32 E-value=73 Score=25.59 Aligned_cols=27 Identities=22% Similarity=0.500 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhCCchhhhhccCCCCCHH
Q 039198 76 EQLIVNLHAVLGNKWSAIATRLPGRTDN 103 (351)
Q Consensus 76 D~~Ll~lv~~~G~kW~~IA~~lpgRT~~ 103 (351)
|+.|..+....|..|..+|.+| |=+..
T Consensus 2 ~~~L~~la~~LG~~W~~Lar~L-gls~~ 28 (83)
T cd08319 2 DRELNQLAQRLGPEWEQVLLDL-GLSQT 28 (83)
T ss_pred HHHHHHHHHHHhhhHHHHHHHc-CCCHH
Confidence 5678889999999999999999 44443
No 87
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=24.92 E-value=54 Score=24.69 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=20.0
Q ss_pred hhhhhccCC-CCCHHHHHHHHHHhhh
Q 039198 90 WSAIATRLP-GRTDNEIKNFWNTHLK 114 (351)
Q Consensus 90 W~~IA~~lp-gRT~~qcr~RW~~~Lr 114 (351)
|..||..++ .-+...|+.||.++..
T Consensus 29 w~~Ia~~l~~~~~~~~~~~~w~~Lr~ 54 (85)
T PF10545_consen 29 WQEIARELGKEFSVDDCKKRWKNLRD 54 (85)
T ss_pred HHHHHHHHccchhHHHHHHHHHHHHH
Confidence 999999996 3577899999987443
No 88
>TIGR02937 sigma70-ECF RNA polymerase sigma factor, sigma-70 family. Several PFAM models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Probab=23.28 E-value=1.1e+02 Score=24.57 Aligned_cols=33 Identities=27% Similarity=0.274 Sum_probs=24.3
Q ss_pred HHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhh
Q 039198 82 LHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKK 115 (351)
Q Consensus 82 lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~Lr~ 115 (351)
++...|..+..||+.+ |=+...++.+....+++
T Consensus 121 ~~~~~g~s~~eIA~~l-~~s~~~v~~~~~~~~~k 153 (158)
T TIGR02937 121 LRYLEGLSYKEIAEIL-GISVGTVKRRLKRARKK 153 (158)
T ss_pred hHHhcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3334577899999999 66888888888765543
No 89
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=23.10 E-value=1.5e+02 Score=24.42 Aligned_cols=44 Identities=20% Similarity=0.208 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHHHHHh----CC----chhhhh----ccCC-CCCHHHHHHHHHHhh
Q 039198 70 KFSEEEEQLIVNLHAVL----GN----KWSAIA----TRLP-GRTDNEIKNFWNTHL 113 (351)
Q Consensus 70 ~WT~EED~~Ll~lv~~~----G~----kW~~IA----~~lp-gRT~~qcr~RW~~~L 113 (351)
.||+|++..|++.+..| |. +|..+- ..+. .=+..|+.++-+.+-
T Consensus 6 ~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK 62 (98)
T PF04504_consen 6 LWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLK 62 (98)
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Confidence 59999999999988766 62 344433 3332 225566655554433
No 90
>PF05263 DUF722: Protein of unknown function (DUF722); InterPro: IPR007927 This entry is represented by Bacteriophage bIL285, Orf38. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=22.86 E-value=1.3e+02 Score=26.26 Aligned_cols=44 Identities=23% Similarity=0.511 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHHH-Hh-CCchhhhhccCCCCCHHHHHHHHHHhhhhhh
Q 039198 71 FSEEEEQLIVNLHA-VL-GNKWSAIATRLPGRTDNEIKNFWNTHLKKKL 117 (351)
Q Consensus 71 WT~EED~~Ll~lv~-~~-G~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~i 117 (351)
++++ +.+++.+.- .+ |..|..||..+ +-+..+|+. |+.-++..+
T Consensus 82 l~de-~k~Ii~lry~~r~~~TW~~IA~~l-~i~erta~r-~~~~fK~~i 127 (130)
T PF05263_consen 82 LIDE-EKRIIKLRYDRRSRRTWYQIAQKL-HISERTARR-WRDRFKNDI 127 (130)
T ss_pred hCHH-HHHHHHHHHcccccchHHHHHHHh-CccHHHHHH-HHHHHHHHh
Confidence 3444 444444432 22 35699999988 556666653 444444433
No 91
>smart00351 PAX Paired Box domain.
Probab=22.65 E-value=1.2e+02 Score=25.65 Aligned_cols=73 Identities=14% Similarity=0.161 Sum_probs=47.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccc-cccccccccc--ccCCCC----CCCCCCHHHHHHHHHHHHH
Q 039198 13 IKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRC-GKSCRLRWTN--YLRPDI----KRGKFSEEEEQLIVNLHAV 85 (351)
Q Consensus 13 lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs-~kqCr~Rw~n--~L~p~l----krg~WT~EED~~Ll~lv~~ 85 (351)
....+.+.|+-++++.++. -|. .-.+||+.+|..|. ...+..||.. .+.|.- +...=+++++..|++++.+
T Consensus 13 ~~~~~~s~~~R~riv~~~~-~G~-s~~~iA~~~gvs~~tV~kwi~r~~~~G~~~pk~~gg~rp~~~~~~~~~~I~~~~~~ 90 (125)
T smart00351 13 VNGRPLPDEERQRIVELAQ-NGV-RPCDISRQLCVSHGCVSKILGRYYETGSIRPGAIGGSKPKVATPKVVKKIADYKQE 90 (125)
T ss_pred cCCCCCCHHHHHHHHHHHH-cCC-CHHHHHHHHCcCHHHHHHHHHHHHHcCCcCCcCCCCCCCCccCHHHHHHHHHHHHH
Confidence 4556799999999998886 453 78999999974443 4445555543 344432 2223566667777777766
Q ss_pred hC
Q 039198 86 LG 87 (351)
Q Consensus 86 ~G 87 (351)
++
T Consensus 91 ~p 92 (125)
T smart00351 91 NP 92 (125)
T ss_pred CC
Confidence 54
No 92
>PRK09645 RNA polymerase sigma factor SigL; Provisional
Probab=22.32 E-value=1.6e+02 Score=25.40 Aligned_cols=27 Identities=26% Similarity=0.275 Sum_probs=21.0
Q ss_pred hCCchhhhhccCCCCCHHHHHHHHHHhh
Q 039198 86 LGNKWSAIATRLPGRTDNEIKNFWNTHL 113 (351)
Q Consensus 86 ~G~kW~~IA~~lpgRT~~qcr~RW~~~L 113 (351)
.|-.-..||..| |.+...|+.|....+
T Consensus 133 ~g~s~~EIA~~l-gis~~tV~~~l~ra~ 159 (173)
T PRK09645 133 RGWSTAQIAADL-GIPEGTVKSRLHYAL 159 (173)
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 356689999998 888888988876444
No 93
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=21.76 E-value=32 Score=27.67 Aligned_cols=44 Identities=20% Similarity=0.242 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCC
Q 039198 21 EEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDI 66 (351)
Q Consensus 21 EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~l 66 (351)
+.|.+++.++...+.-.+.+||+.+| -+...|+.|.....+.++
T Consensus 3 ~~D~~il~~L~~~~~~~~~~la~~l~--~s~~tv~~~l~~L~~~g~ 46 (108)
T smart00344 3 EIDRKILEELQKDARISLAELAKKVG--LSPSTVHNRVKRLEEEGV 46 (108)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCC
Confidence 57889999999988789999999997 888888888777655443
No 94
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=21.53 E-value=44 Score=35.15 Aligned_cols=46 Identities=13% Similarity=0.166 Sum_probs=39.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc
Q 039198 14 KKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 61 (351)
Q Consensus 14 kKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~ 61 (351)
....||.||--++-.+..-||. ++.+|-+.| |.|+-.++++-|...
T Consensus 186 ~~d~WT~Ed~vlFe~aF~~~GK-~F~kIrq~L-P~rsLaSlvqyYy~~ 231 (534)
T KOG1194|consen 186 FPDEWTAEDIVLFEQAFQFFGK-DFHKIRQAL-PHRSLASLVQYYYSW 231 (534)
T ss_pred CcccchHHHHHHHHHHHHHhcc-cHHHHHHHc-cCccHHHHHHHHHHH
Confidence 4568999999999999999996 999999999 899999988777643
No 95
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=21.36 E-value=29 Score=29.56 Aligned_cols=48 Identities=13% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCC
Q 039198 20 PEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRG 69 (351)
Q Consensus 20 ~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkrg 69 (351)
.+-|.+++.+.++.+...+.+||+.+| -+...|+.|-.+..+.++-+|
T Consensus 7 D~~D~~IL~~L~~d~r~~~~eia~~lg--lS~~~v~~Ri~~L~~~GiI~~ 54 (154)
T COG1522 7 DDIDRRILRLLQEDARISNAELAERVG--LSPSTVLRRIKRLEEEGVIKG 54 (154)
T ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCceee
Done!