Query 039198
Match_columns 351
No_of_seqs 267 out of 1907
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 12:01:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039198.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039198hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h89_C C-MYB, MYB proto-oncoge 100.0 4.8E-41 1.6E-45 295.6 4.0 150 12-163 3-153 (159)
2 3zqc_A MYB3; transcription-DNA 100.0 2.5E-32 8.6E-37 233.5 10.3 128 15-147 2-129 (131)
3 1gv2_A C-MYB, MYB proto-oncoge 100.0 2.6E-32 9E-37 224.4 9.2 105 12-117 1-105 (105)
4 1h8a_C AMV V-MYB, MYB transfor 100.0 7.4E-33 2.5E-37 235.5 4.1 120 41-162 1-121 (128)
5 2k9n_A MYB24; R2R3 domain, DNA 100.0 8E-32 2.7E-36 222.9 7.7 104 15-119 1-104 (107)
6 1h8a_C AMV V-MYB, MYB transfor 100.0 3.1E-31 1.1E-35 225.5 8.4 106 11-117 23-128 (128)
7 3osg_A MYB21; transcription-DN 100.0 5.4E-31 1.9E-35 224.0 8.7 104 11-116 7-110 (126)
8 1h89_C C-MYB, MYB proto-oncoge 100.0 7.1E-29 2.4E-33 218.0 8.1 107 10-117 53-159 (159)
9 1gv2_A C-MYB, MYB proto-oncoge 99.9 1.4E-25 4.8E-30 184.2 4.1 97 65-162 1-98 (105)
10 3osg_A MYB21; transcription-DN 99.9 2.1E-25 7.3E-30 189.4 4.7 99 63-162 6-104 (126)
11 2k9n_A MYB24; R2R3 domain, DNA 99.9 3.7E-25 1.3E-29 182.9 3.3 94 68-162 1-95 (107)
12 3zqc_A MYB3; transcription-DNA 99.9 1.6E-24 5.5E-29 185.0 4.4 94 68-162 2-96 (131)
13 2dim_A Cell division cycle 5-l 99.8 5E-21 1.7E-25 146.9 1.2 65 11-76 5-69 (70)
14 2dim_A Cell division cycle 5-l 99.8 1.4E-19 4.9E-24 138.8 6.6 65 63-127 4-69 (70)
15 2din_A Cell division cycle 5-l 99.7 5E-17 1.7E-21 123.2 6.5 60 61-121 2-61 (66)
16 2llk_A Cyclin-D-binding MYB-li 99.7 2.6E-17 8.9E-22 128.0 4.9 60 54-115 9-68 (73)
17 2d9a_A B-MYB, MYB-related prot 99.7 6.1E-17 2.1E-21 120.4 5.5 56 63-118 3-59 (60)
18 2cu7_A KIAA1915 protein; nucle 99.7 1.1E-16 3.6E-21 123.6 6.8 66 62-128 3-68 (72)
19 1ign_A Protein (RAP1); RAP1,ye 99.7 7.8E-17 2.7E-21 149.8 6.4 105 11-116 4-200 (246)
20 1ity_A TRF1; helix-turn-helix, 99.6 2.1E-16 7.1E-21 120.9 7.3 63 61-123 3-68 (69)
21 1guu_A C-MYB, MYB proto-oncoge 99.6 2.3E-16 7.7E-21 114.0 6.0 51 66-116 1-52 (52)
22 1gvd_A MYB proto-oncogene prot 99.6 2.3E-16 7.9E-21 114.1 6.0 51 66-116 1-52 (52)
23 2juh_A Telomere binding protei 99.6 5.5E-17 1.9E-21 137.3 2.8 83 10-92 12-103 (121)
24 2roh_A RTBP1, telomere binding 99.6 1.1E-16 3.9E-21 135.6 4.4 86 4-89 20-114 (122)
25 2juh_A Telomere binding protei 99.6 1.4E-16 4.9E-21 134.8 3.9 83 62-144 11-104 (121)
26 2d9a_A B-MYB, MYB-related prot 99.6 2.4E-16 8.1E-21 117.2 2.7 56 11-67 4-59 (60)
27 1gvd_A MYB proto-oncogene prot 99.6 3.4E-16 1.2E-20 113.2 2.6 52 13-65 1-52 (52)
28 1w0t_A Telomeric repeat bindin 99.6 1.9E-15 6.4E-20 109.9 6.0 49 67-115 1-52 (53)
29 1x41_A Transcriptional adaptor 99.6 2.3E-15 7.7E-20 112.3 5.6 54 63-116 3-57 (60)
30 2roh_A RTBP1, telomere binding 99.6 2.5E-15 8.4E-20 127.4 6.4 79 63-141 26-115 (122)
31 3sjm_A Telomeric repeat-bindin 99.6 3E-15 1E-19 113.3 6.1 53 65-117 8-63 (64)
32 1guu_A C-MYB, MYB proto-oncoge 99.6 4.9E-16 1.7E-20 112.3 1.5 52 13-65 1-52 (52)
33 2yum_A ZZZ3 protein, zinc fing 99.5 4.5E-15 1.5E-19 115.0 6.1 62 63-124 3-70 (75)
34 1ity_A TRF1; helix-turn-helix, 99.5 9.4E-16 3.2E-20 117.2 1.8 62 10-72 5-68 (69)
35 1ign_A Protein (RAP1); RAP1,ye 99.5 2.6E-15 8.9E-20 139.6 2.8 73 64-136 4-111 (246)
36 2elk_A SPCC24B10.08C protein; 99.5 1.7E-14 5.9E-19 106.9 5.9 50 64-113 5-56 (58)
37 3sjm_A Telomeric repeat-bindin 99.5 2.5E-15 8.7E-20 113.8 1.3 55 12-66 8-63 (64)
38 1x41_A Transcriptional adaptor 99.5 5.7E-15 1.9E-19 110.1 1.8 54 11-65 4-57 (60)
39 1w0t_A Telomeric repeat bindin 99.4 1.1E-14 3.8E-19 105.8 1.2 49 14-63 1-51 (53)
40 2din_A Cell division cycle 5-l 99.4 5.7E-15 1.9E-19 111.8 -0.9 57 10-69 4-60 (66)
41 2ltp_A Nuclear receptor corepr 99.1 1.4E-14 4.9E-19 116.3 0.0 56 61-116 9-64 (89)
42 2elk_A SPCC24B10.08C protein; 99.4 2.7E-14 9.3E-19 105.8 1.5 52 11-62 5-56 (58)
43 2yum_A ZZZ3 protein, zinc fing 99.4 2.1E-14 7.2E-19 111.2 0.3 60 11-71 4-68 (75)
44 2aje_A Telomere repeat-binding 99.4 3.4E-13 1.1E-17 111.6 7.1 76 63-138 8-94 (105)
45 2cu7_A KIAA1915 protein; nucle 99.4 8.3E-14 2.8E-18 107.3 0.3 56 11-68 5-60 (72)
46 2ckx_A NGTRF1, telomere bindin 99.3 1.7E-12 5.9E-17 103.1 6.5 67 69-135 1-78 (83)
47 2cqr_A RSGI RUH-043, DNAJ homo 99.3 1.8E-12 6.2E-17 100.6 5.9 52 63-114 13-68 (73)
48 2yus_A SWI/SNF-related matrix- 99.3 1.2E-12 4E-17 103.1 4.5 49 64-112 14-62 (79)
49 2aje_A Telomere repeat-binding 99.3 8.7E-13 3E-17 109.1 3.5 78 10-87 8-94 (105)
50 2ckx_A NGTRF1, telomere bindin 99.3 1.5E-12 5.3E-17 103.4 3.7 69 16-85 1-79 (83)
51 2llk_A Cyclin-D-binding MYB-li 99.3 1.1E-12 3.8E-17 101.8 2.4 55 10-68 18-72 (73)
52 2yus_A SWI/SNF-related matrix- 99.2 9E-12 3.1E-16 98.0 3.3 49 11-61 14-62 (79)
53 2ltp_A Nuclear receptor corepr 98.7 4.3E-12 1.5E-16 101.8 0.0 53 10-64 11-63 (89)
54 1x58_A Hypothetical protein 49 99.1 1.5E-10 5.2E-15 86.9 6.3 49 67-115 7-58 (62)
55 2cjj_A Radialis; plant develop 99.1 1.4E-10 4.7E-15 94.0 5.7 49 67-115 7-59 (93)
56 2cqr_A RSGI RUH-043, DNAJ homo 99.1 1.9E-11 6.6E-16 94.8 0.5 52 11-63 14-68 (73)
57 2eqr_A N-COR1, N-COR, nuclear 98.8 4.3E-09 1.5E-13 78.5 6.2 47 67-113 11-57 (61)
58 3hm5_A DNA methyltransferase 1 98.7 1.3E-08 4.6E-13 82.2 5.6 67 51-121 17-88 (93)
59 2cjj_A Radialis; plant develop 98.7 1.8E-09 6E-14 87.5 0.1 48 14-62 7-57 (93)
60 2cqq_A RSGI RUH-037, DNAJ homo 98.6 3.7E-08 1.3E-12 76.1 5.5 50 65-115 5-58 (72)
61 1x58_A Hypothetical protein 49 98.6 8.4E-09 2.9E-13 77.4 1.4 50 12-63 5-57 (62)
62 2iw5_B Protein corest, REST co 98.6 7.2E-08 2.5E-12 89.1 6.3 50 66-115 131-180 (235)
63 1fex_A TRF2-interacting telome 98.5 1.4E-07 4.7E-12 70.1 5.2 47 68-114 2-58 (59)
64 2eqr_A N-COR1, N-COR, nuclear 98.4 6.1E-08 2.1E-12 72.2 2.4 50 11-62 8-57 (61)
65 2cqq_A RSGI RUH-037, DNAJ homo 98.4 4E-08 1.4E-12 75.9 0.2 51 11-63 4-57 (72)
66 2xag_B REST corepressor 1; ami 98.3 3.8E-07 1.3E-11 92.6 5.0 46 69-114 381-426 (482)
67 1wgx_A KIAA1903 protein; MYB D 98.2 1E-06 3.4E-11 68.3 4.7 48 68-115 8-59 (73)
68 1fex_A TRF2-interacting telome 98.2 2.8E-07 9.7E-12 68.4 0.7 48 15-63 2-58 (59)
69 1wgx_A KIAA1903 protein; MYB D 98.0 1.1E-06 3.9E-11 67.9 1.2 49 14-63 7-58 (73)
70 2iw5_B Protein corest, REST co 97.9 3E-06 1E-10 78.3 1.2 49 13-63 131-179 (235)
71 2yqk_A Arginine-glutamic acid 97.8 4.5E-05 1.5E-09 57.0 6.4 49 63-111 4-53 (63)
72 1ug2_A 2610100B20RIK gene prod 97.7 4.4E-05 1.5E-09 61.2 6.0 50 69-118 34-86 (95)
73 4eef_G F-HB80.4, designed hema 97.6 1.1E-05 3.9E-10 62.3 1.2 44 15-59 20-66 (74)
74 4eef_G F-HB80.4, designed hema 97.6 1.7E-05 5.8E-10 61.3 1.4 43 68-110 20-66 (74)
75 1ofc_X ISWI protein; nuclear p 97.5 0.00014 4.9E-09 70.0 6.3 100 16-116 111-276 (304)
76 2lr8_A CAsp8-associated protei 96.5 2.1E-05 7.2E-10 59.9 0.0 44 70-114 16-62 (70)
77 4a69_C Nuclear receptor corepr 97.3 0.00031 1.1E-08 56.6 5.6 44 68-111 43-86 (94)
78 2yqk_A Arginine-glutamic acid 97.3 9.2E-05 3.1E-09 55.3 2.3 48 11-60 5-53 (63)
79 2crg_A Metastasis associated p 97.1 0.00073 2.5E-08 51.5 5.9 43 68-110 8-51 (70)
80 4iej_A DNA methyltransferase 1 97.0 0.0013 4.5E-08 52.9 6.5 53 68-120 30-87 (93)
81 2ebi_A DNA binding protein GT- 96.9 0.00083 2.8E-08 52.6 4.2 50 67-116 3-66 (86)
82 3hm5_A DNA methyltransferase 1 96.7 0.00042 1.4E-08 55.9 1.6 49 13-62 28-80 (93)
83 2xag_B REST corepressor 1; ami 96.7 0.00037 1.3E-08 70.8 1.4 47 14-62 379-425 (482)
84 2ebi_A DNA binding protein GT- 96.4 0.00025 8.5E-09 55.6 -1.6 49 14-62 3-63 (86)
85 2crg_A Metastasis associated p 96.4 0.0011 3.8E-08 50.5 1.6 44 14-59 7-51 (70)
86 4b4c_A Chromodomain-helicase-D 96.3 0.0043 1.5E-07 55.7 5.4 42 12-53 4-48 (211)
87 4a69_C Nuclear receptor corepr 96.3 0.0013 4.3E-08 53.0 1.6 44 15-60 43-86 (94)
88 2y9y_A Imitation switch protei 95.8 0.015 5.1E-07 57.4 7.2 101 16-116 124-292 (374)
89 2lr8_A CAsp8-associated protei 94.8 0.0015 5E-08 49.8 0.0 48 14-63 13-62 (70)
90 1ug2_A 2610100B20RIK gene prod 95.6 0.0019 6.4E-08 51.8 -0.1 46 14-60 32-79 (95)
91 1ofc_X ISWI protein; nuclear p 94.4 0.068 2.3E-06 51.4 6.7 80 69-148 111-245 (304)
92 1irz_A ARR10-B; helix-turn-hel 94.3 0.085 2.9E-06 39.6 5.7 48 66-113 5-57 (64)
93 4b4c_A Chromodomain-helicase-D 93.5 0.052 1.8E-06 48.5 3.9 38 5-43 125-162 (211)
94 4iej_A DNA methyltransferase 1 92.4 0.043 1.5E-06 44.1 1.6 48 13-61 28-79 (93)
95 2xb0_X Chromo domain-containin 90.0 0.14 4.8E-06 48.5 2.6 27 17-43 170-196 (270)
96 2xb0_X Chromo domain-containin 87.2 0.37 1.3E-05 45.6 3.4 27 69-95 169-196 (270)
97 1irz_A ARR10-B; helix-turn-hel 77.3 0.9 3.1E-05 33.9 1.5 47 12-59 4-54 (64)
98 2rq5_A Protein jumonji; develo 54.8 2.9 9.9E-05 34.7 0.3 45 37-84 65-113 (121)
99 2li6_A SWI/SNF chromatin-remod 52.2 9.1 0.00031 31.1 2.9 39 78-116 53-99 (116)
100 2lm1_A Lysine-specific demethy 48.9 21 0.00071 28.3 4.6 39 78-116 48-98 (107)
101 2jrz_A Histone demethylase jar 48.7 19 0.00064 29.3 4.3 39 78-116 44-94 (117)
102 2y9y_A Imitation switch protei 46.0 29 0.00098 34.1 5.9 40 69-108 124-165 (374)
103 2rq5_A Protein jumonji; develo 44.7 20 0.00069 29.6 3.9 93 12-133 4-111 (121)
104 2cxy_A BAF250B subunit, HBAF25 44.6 24 0.00083 28.9 4.4 39 78-116 55-105 (125)
105 2eqy_A RBP2 like, jumonji, at 42.9 26 0.00089 28.7 4.4 39 78-116 46-96 (122)
106 1c20_A DEAD ringer protein; DN 42.9 26 0.0009 28.7 4.4 40 77-116 55-107 (128)
107 1kkx_A Transcription regulator 42.0 15 0.00053 30.2 2.8 39 78-116 52-98 (123)
108 3cz6_A DNA-binding protein RAP 40.8 21 0.00073 31.3 3.6 24 11-34 110-141 (168)
109 2kk0_A AT-rich interactive dom 39.9 36 0.0012 28.7 4.9 39 78-116 68-119 (145)
110 2li6_A SWI/SNF chromatin-remod 37.3 5.3 0.00018 32.5 -0.7 39 25-64 53-98 (116)
111 2o8x_A Probable RNA polymerase 34.6 35 0.0012 23.6 3.4 43 71-115 16-58 (70)
112 2jxj_A Histone demethylase jar 33.7 20 0.00068 27.8 2.1 39 78-116 40-90 (96)
113 2jrz_A Histone demethylase jar 31.8 7.6 0.00026 31.7 -0.7 40 25-64 44-93 (117)
114 1ku3_A Sigma factor SIGA; heli 31.2 43 0.0015 23.9 3.5 43 71-115 11-57 (73)
115 2k27_A Paired box protein PAX- 30.1 90 0.0031 25.5 5.8 68 15-87 23-100 (159)
116 1c20_A DEAD ringer protein; DN 28.7 8.5 0.00029 31.8 -0.9 40 25-64 56-106 (128)
117 1u78_A TC3 transposase, transp 27.7 1.8E+02 0.0063 22.5 7.1 85 16-106 5-97 (141)
118 1ig6_A MRF-2, modulator recogn 27.5 26 0.00087 27.8 1.8 39 78-116 37-88 (107)
119 1k78_A Paired box protein PAX5 27.1 1E+02 0.0034 24.8 5.5 68 15-87 30-107 (149)
120 3i4p_A Transcriptional regulat 25.9 52 0.0018 27.4 3.5 45 74-119 3-48 (162)
121 2p7v_B Sigma-70, RNA polymeras 25.0 50 0.0017 23.2 2.9 40 75-115 9-52 (68)
122 3i4p_A Transcriptional regulat 24.1 11 0.00039 31.6 -1.0 44 21-66 3-46 (162)
No 1
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=100.00 E-value=4.8e-41 Score=295.64 Aligned_cols=150 Identities=26% Similarity=0.510 Sum_probs=107.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC-ch
Q 039198 12 NIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIVNLHAVLGN-KW 90 (351)
Q Consensus 12 ~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~-kW 90 (351)
++++++||+|||++|+++|++||.++|..||+.+ ++|+++||++||.++|+|.+++|+||+|||++|+++|.+||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYL-PNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc-CCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 5789999999999999999999988999999999 599999999999999999999999999999999999999995 69
Q ss_pred hhhhccCCCCCHHHHHHHHHHhhhhhhhcCCCCccCcchhhhHHHHhCCCchHHhhhccCCCCCCCCCCccch
Q 039198 91 SAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTDLNNVLANLPQLLAAANFAVGNLMNVPNSWDI 163 (351)
Q Consensus 91 ~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~~~~t~eEd~~l~~l~~~~Gn~w~~Ia~~~~~grt~~~~~n~wn~ 163 (351)
..||..|||||++||++||.++|.|.+++++||++||..|++++..+|++|..||..++ ||+++.|+|+|+.
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~-gRt~~~~knr~~~ 153 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLP-GRTDNAIKNHWNS 153 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTST-TCCHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCHHHHHHHCC-CCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988 9999999999983
No 2
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.97 E-value=2.5e-32 Score=233.47 Aligned_cols=128 Identities=33% Similarity=0.596 Sum_probs=108.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhh
Q 039198 15 KGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIVNLHAVLGNKWSAIA 94 (351)
Q Consensus 15 Kg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kW~~IA 94 (351)
||+||+|||++|+.+|.+||.++|..||+.| ++|+++||++||.++|+|.+++|+||+|||++|+++|.+||++|..||
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFL-PNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSC-TTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHH-CCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 7999999999999999999988999999999 699999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHhhhhhhhcCCCCccCcchhhhHHHHhCCCchHHhhh
Q 039198 95 TRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTDLNNVLANLPQLLAAA 147 (351)
Q Consensus 95 ~~lpgRT~~qcr~RW~~~Lr~~ik~~~~t~eEd~~l~~l~~~~Gn~w~~Ia~~ 147 (351)
.+|||||+.+|++||+++|++.+..+.++.+--.+. ...+.+|+.|+..
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~~~p~----~~kk~~~~~i~k~ 129 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLPD----RSKKRKAADVPKK 129 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCCCCCC----CC-----------
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCCCcccccCch----hhhhhhhhhcchh
Confidence 999999999999999999999998888766543321 2234556666543
No 3
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.97 E-value=2.6e-32 Score=224.37 Aligned_cols=105 Identities=47% Similarity=0.941 Sum_probs=99.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchh
Q 039198 12 NIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIVNLHAVLGNKWS 91 (351)
Q Consensus 12 ~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kW~ 91 (351)
++++|+||+|||++|+++|++||.++|..||+.| ++|+++||++||.++|+|.+++|+||+|||++|+++|.+||.+|.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTS-TTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhh-cCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 4789999999999999999999988999999999 699999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCHHHHHHHHHHhhhhhh
Q 039198 92 AIATRLPGRTDNEIKNFWNTHLKKKL 117 (351)
Q Consensus 92 ~IA~~lpgRT~~qcr~RW~~~Lr~~i 117 (351)
.||+.|||||+.+|++||+.++++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999998753
No 4
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.97 E-value=7.4e-33 Score=235.52 Aligned_cols=120 Identities=24% Similarity=0.442 Sum_probs=96.9
Q ss_pred ccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHhhhhhhhc
Q 039198 41 LPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIVNLHAVLGN-KWSAIATRLPGRTDNEIKNFWNTHLKKKLLQ 119 (351)
Q Consensus 41 IA~~lgp~Rs~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~-kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~ 119 (351)
||+.+ |+|+++||++||.++|+|.+++|+||+|||++|+++|.+||. +|..||..|||||+.||++||.++|.|.+++
T Consensus 1 Ia~~~-~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVI-KNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred Ccccc-CCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 67778 799999999999999999999999999999999999999995 6999999999999999999999999999999
Q ss_pred CCCCccCcchhhhHHHHhCCCchHHhhhccCCCCCCCCCCccc
Q 039198 120 MGIDPVTHRPRTDLNNVLANLPQLLAAANFAVGNLMNVPNSWD 162 (351)
Q Consensus 120 ~~~t~eEd~~l~~l~~~~Gn~w~~Ia~~~~~grt~~~~~n~wn 162 (351)
++||++||..|++++..+|++|+.||..++ ||+++.|+|+|+
T Consensus 80 ~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~-gRt~~~~k~r~~ 121 (128)
T 1h8a_C 80 TSWTEEEDRIIYQAHKRLGNRWAEIAKLLP-GRTDNAVKNHWN 121 (128)
T ss_dssp SCCCHHHHHHHHHHHHHHCSCHHHHGGGST-TCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCcCHHHHHHHCC-CCCHHHHHHHHH
Confidence 999999999999999999999999999988 999999999998
No 5
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.97 E-value=8e-32 Score=222.90 Aligned_cols=104 Identities=33% Similarity=0.622 Sum_probs=100.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhh
Q 039198 15 KGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIVNLHAVLGNKWSAIA 94 (351)
Q Consensus 15 Kg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kW~~IA 94 (351)
||+||+|||++|+.+|.+||.++|..||..| ++|+++||++||.++|+|.+++|+||+|||++|+.+|.+||.+|..||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLM-ITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHT-TTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhc-CCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 6899999999999999999988999999999 599999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHhhhhhhhc
Q 039198 95 TRLPGRTDNEIKNFWNTHLKKKLLQ 119 (351)
Q Consensus 95 ~~lpgRT~~qcr~RW~~~Lr~~ik~ 119 (351)
..|||||+.+|++||+.++++..+.
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 9999999999999999999887654
No 6
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.97 E-value=3.1e-31 Score=225.53 Aligned_cols=106 Identities=45% Similarity=0.935 Sum_probs=101.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCch
Q 039198 11 NNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIVNLHAVLGNKW 90 (351)
Q Consensus 11 ~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kW 90 (351)
|++++|+||+|||++|+++|++||.++|..||+.+ ++|++.||++||.++|+|.+++|+||+|||++|+++|.+||.+|
T Consensus 23 p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~~W 101 (128)
T 1h8a_C 23 PELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHL-KGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRW 101 (128)
T ss_dssp TTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHS-SSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCSCH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHh-cCCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCcCH
Confidence 88999999999999999999999988999999999 69999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCHHHHHHHHHHhhhhhh
Q 039198 91 SAIATRLPGRTDNEIKNFWNTHLKKKL 117 (351)
Q Consensus 91 ~~IA~~lpgRT~~qcr~RW~~~Lr~~i 117 (351)
..||+.|||||+.+|++||+.++++++
T Consensus 102 ~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 102 AEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp HHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999988753
No 7
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.97 E-value=5.4e-31 Score=223.95 Aligned_cols=104 Identities=39% Similarity=0.700 Sum_probs=100.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCch
Q 039198 11 NNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIVNLHAVLGNKW 90 (351)
Q Consensus 11 ~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kW 90 (351)
+..+||+||+|||++|+++|.+||. +|..||+.+ ++|+++||++||.++|+|.+++|+||+|||++|+++|.+||.+|
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~-~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W 84 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATF-PNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQW 84 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTC-TTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHc-CCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCH
Confidence 6889999999999999999999997 999999999 58999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCHHHHHHHHHHhhhhh
Q 039198 91 SAIATRLPGRTDNEIKNFWNTHLKKK 116 (351)
Q Consensus 91 ~~IA~~lpgRT~~qcr~RW~~~Lr~~ 116 (351)
..||..|||||+.+|++||..++++.
T Consensus 85 ~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 85 AIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999888764
No 8
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.95 E-value=7.1e-29 Score=218.01 Aligned_cols=107 Identities=46% Similarity=0.912 Sum_probs=101.7
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCc
Q 039198 10 INNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIVNLHAVLGNK 89 (351)
Q Consensus 10 ~~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~k 89 (351)
.|++++++||+|||++|+.+|.+||..+|..||+.| ++|++.||+.||.++|+|.+++++||+|||++|++++.+||.+
T Consensus 53 ~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~ 131 (159)
T 1h89_C 53 NPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNR 131 (159)
T ss_dssp CTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTS-TTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred CCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHc-CCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCC
Confidence 388999999999999999999999987899999999 6999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCCHHHHHHHHHHhhhhhh
Q 039198 90 WSAIATRLPGRTDNEIKNFWNTHLKKKL 117 (351)
Q Consensus 90 W~~IA~~lpgRT~~qcr~RW~~~Lr~~i 117 (351)
|..||+.|||||+.+|++||+.++++++
T Consensus 132 W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 132 WAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999999888753
No 9
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.91 E-value=1.4e-25 Score=184.17 Aligned_cols=97 Identities=23% Similarity=0.389 Sum_probs=93.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHhhhhhhhcCCCCccCcchhhhHHHHhCCCchH
Q 039198 65 DIKRGKFSEEEEQLIVNLHAVLGN-KWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTDLNNVLANLPQL 143 (351)
Q Consensus 65 ~lkrg~WT~EED~~Ll~lv~~~G~-kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~~~~t~eEd~~l~~l~~~~Gn~w~~ 143 (351)
++++|+||+|||++|+++|.+||. +|..||..||||++.||+.||.++|.|.+++++||++||..|++++..+|++|+.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~ 80 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE 80 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence 378999999999999999999995 6999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCCCCCCCCCccc
Q 039198 144 LAAANFAVGNLMNVPNSWD 162 (351)
Q Consensus 144 Ia~~~~~grt~~~~~n~wn 162 (351)
||..++ ||+++.|+++|+
T Consensus 81 Ia~~l~-gRt~~~~k~rw~ 98 (105)
T 1gv2_A 81 IAKLLP-GRTDNAIKNHWN 98 (105)
T ss_dssp HHTTCT-TCCHHHHHHHHH
T ss_pred HHHHcC-CCCHHHHHHHHH
Confidence 999988 999999999998
No 10
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.91 E-value=2.1e-25 Score=189.42 Aligned_cols=99 Identities=17% Similarity=0.265 Sum_probs=95.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhhhhhcCCCCccCcchhhhHHHHhCCCch
Q 039198 63 RPDIKRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTDLNNVLANLPQ 142 (351)
Q Consensus 63 ~p~lkrg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~~~~t~eEd~~l~~l~~~~Gn~w~ 142 (351)
.+..++|+||+|||++|+++|.+||.+|..||..|+||++.||+.||.++|.|.+.+++||++||..|++++..||+.|+
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~ 85 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQWA 85 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCCCCCCCCCccc
Q 039198 143 LLAAANFAVGNLMNVPNSWD 162 (351)
Q Consensus 143 ~Ia~~~~~grt~~~~~n~wn 162 (351)
.||..++ ||+++.|+++|.
T Consensus 86 ~Ia~~l~-gRt~~~~k~rw~ 104 (126)
T 3osg_A 86 IIAKFFP-GRTDIHIKNRWV 104 (126)
T ss_dssp HHHTTST-TCCHHHHHHHHH
T ss_pred HHHHHcC-CCCHHHHHHHHH
Confidence 9999988 999999999998
No 11
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.90 E-value=3.7e-25 Score=182.86 Aligned_cols=94 Identities=18% Similarity=0.203 Sum_probs=91.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHhhhhhhhcCCCCccCcchhhhHHHHhCCCchHHhh
Q 039198 68 RGKFSEEEEQLIVNLHAVLGN-KWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTDLNNVLANLPQLLAA 146 (351)
Q Consensus 68 rg~WT~EED~~Ll~lv~~~G~-kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~~~~t~eEd~~l~~l~~~~Gn~w~~Ia~ 146 (351)
||+||+|||++|+++|..||. +|..||..|||||+.||+.||.++|.|.+.+++||++||..|+.++..||++|..||.
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~ 80 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK 80 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 689999999999999999995 8999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCCccc
Q 039198 147 ANFAVGNLMNVPNSWD 162 (351)
Q Consensus 147 ~~~~grt~~~~~n~wn 162 (351)
.++ ||+++.|+++|.
T Consensus 81 ~l~-gRt~~~~k~rw~ 95 (107)
T 2k9n_A 81 FLK-NRSDNNIRNRWM 95 (107)
T ss_dssp HHS-SSCHHHHHHHHH
T ss_pred HCC-CCCHHHHHHHHH
Confidence 988 999999999998
No 12
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.89 E-value=1.6e-24 Score=185.02 Aligned_cols=94 Identities=21% Similarity=0.347 Sum_probs=91.7
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhhhhhhcCCCCccCcchhhhHHHHhCCCchHHhh
Q 039198 68 RGKFSEEEEQLIVNLHAVLG-NKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTDLNNVLANLPQLLAA 146 (351)
Q Consensus 68 rg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~~~~t~eEd~~l~~l~~~~Gn~w~~Ia~ 146 (351)
||+||+|||++|+++|..|| ++|..||..||||++.||+.||.++|.|.+.+++||++||..|++++..+|++|+.||.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~ 81 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAK 81 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 79999999999999999999 77999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCCccc
Q 039198 147 ANFAVGNLMNVPNSWD 162 (351)
Q Consensus 147 ~~~~grt~~~~~n~wn 162 (351)
.++ ||+++.|+++|+
T Consensus 82 ~l~-gRt~~~~k~rw~ 96 (131)
T 3zqc_A 82 LIP-GRTDNAIKNRWN 96 (131)
T ss_dssp TST-TCCHHHHHHHHH
T ss_pred HcC-CCCHHHHHHHHH
Confidence 988 999999999998
No 13
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=5e-21 Score=146.94 Aligned_cols=65 Identities=29% Similarity=0.620 Sum_probs=63.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHH
Q 039198 11 NNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEE 76 (351)
Q Consensus 11 ~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkrg~WT~EED 76 (351)
+.+++++||+|||++|+++|.+||.++|..||+.| ++|+++||+.||.++|+|.+++|+||+|||
T Consensus 5 ~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 5 SSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLL-HRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHS-TTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHh-cCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 78999999999999999999999988999999999 599999999999999999999999999997
No 14
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-19 Score=138.75 Aligned_cols=65 Identities=20% Similarity=0.341 Sum_probs=62.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhhhhhhcCCCCccCc
Q 039198 63 RPDIKRGKFSEEEEQLIVNLHAVLG-NKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTH 127 (351)
Q Consensus 63 ~p~lkrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~~~~t~eEd 127 (351)
.|.+++|+||+|||++|+++|.+|| ++|..||.+|++||++|||+||.++|+|.+++++||++||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4678999999999999999999999 7999999999999999999999999999999999999998
No 15
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=5e-17 Score=123.18 Aligned_cols=60 Identities=23% Similarity=0.366 Sum_probs=57.6
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhhhhhcCC
Q 039198 61 YLRPDIKRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMG 121 (351)
Q Consensus 61 ~L~p~lkrg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~~~ 121 (351)
+|+|.+++++||+|||++|+++|+.||.+|..||. ++|||++|||+||+++|++.+++..
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 78999999999999999999999999999999999 8899999999999999999998765
No 16
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.67 E-value=2.6e-17 Score=127.95 Aligned_cols=60 Identities=23% Similarity=0.386 Sum_probs=47.4
Q ss_pred cccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhh
Q 039198 54 CRLRWTNYLRPDIKRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKK 115 (351)
Q Consensus 54 Cr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~Lr~ 115 (351)
..-||.++|+|.+++|+||+|||++|+++|.+||.+|+.||+.| |||+++||+||+. |+.
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~-L~~ 68 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRL-MKD 68 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHH-CSC
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHH-HHH
Confidence 34689999999999999999999999999999999999999999 9999999999985 443
No 17
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=6.1e-17 Score=120.41 Aligned_cols=56 Identities=23% Similarity=0.422 Sum_probs=53.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhhhhhh
Q 039198 63 RPDIKRGKFSEEEEQLIVNLHAVLG-NKWSAIATRLPGRTDNEIKNFWNTHLKKKLL 118 (351)
Q Consensus 63 ~p~lkrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik 118 (351)
.|.+++++||+|||++|+++|.+|| ++|..||.+|++||+.|||+||+++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 4788999999999999999999999 6999999999999999999999999999874
No 18
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.66 E-value=1.1e-16 Score=123.57 Aligned_cols=66 Identities=24% Similarity=0.318 Sum_probs=61.1
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhhhhhcCCCCccCcc
Q 039198 62 LRPDIKRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHR 128 (351)
Q Consensus 62 L~p~lkrg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~~~~t~eEd~ 128 (351)
..|.+++++||+|||++|+++|.+||.+|..||.+|||||+.|||+||+.++++.++. ++++++..
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~~s 68 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKETPN 68 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCCSC
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCccc
Confidence 5789999999999999999999999999999999999999999999999999999877 77776653
No 19
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.65 E-value=7.8e-17 Score=149.82 Aligned_cols=105 Identities=23% Similarity=0.362 Sum_probs=91.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC-----CcccccccccccccccccccccccccCCCCC------------------
Q 039198 11 NNIKKGPWTPEEDQKLIDYIRKHGHG-----SWRALPKLAGLNRCGKSCRLRWTNYLRPDIK------------------ 67 (351)
Q Consensus 11 ~~lkKg~WT~EED~~L~~~V~k~g~~-----nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lk------------------ 67 (351)
+.++|++||+|||+.|+++|.++|.. .|.+||+.| +|||+.||+.||..+|++.+.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~L-pGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn 82 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYV-PNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN 82 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTS-TTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHc-CCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCC
Confidence 57899999999999999999999764 399999999 799999999999999999986
Q ss_pred -----------CCCCCHHHHHHHHHHHHH-h-------------------------------------------------
Q 039198 68 -----------RGKFSEEEEQLIVNLHAV-L------------------------------------------------- 86 (351)
Q Consensus 68 -----------rg~WT~EED~~Ll~lv~~-~------------------------------------------------- 86 (351)
+.+||.|||-.|+..+.+ |
T Consensus 83 ~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 162 (246)
T 1ign_A 83 LIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRT 162 (246)
T ss_dssp BCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CC
T ss_pred ceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhcc
Confidence 899999999999998876 2
Q ss_pred ----CC----chhhhhccCCCCCHHHHHHHHHHhhhhh
Q 039198 87 ----GN----KWSAIATRLPGRTDNEIKNFWNTHLKKK 116 (351)
Q Consensus 87 ----G~----kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ 116 (351)
|. .|..||+.+|+||..+.|+||...|+..
T Consensus 163 ~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 163 QSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred ccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 11 5999999999999999999999888764
No 20
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.65 E-value=2.1e-16 Score=120.85 Aligned_cols=63 Identities=25% Similarity=0.298 Sum_probs=57.8
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCC--CCCHHHHHHHHHHhhhhhhhcCCCC
Q 039198 61 YLRPDIKRGKFSEEEEQLIVNLHAVLG-NKWSAIATRLP--GRTDNEIKNFWNTHLKKKLLQMGID 123 (351)
Q Consensus 61 ~L~p~lkrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lp--gRT~~qcr~RW~~~Lr~~ik~~~~t 123 (351)
...+..++++||+|||++|+++|.+|| ++|..||..|+ |||+.|||+||.++|++.+.+...+
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 346678899999999999999999999 79999999999 9999999999999999999887653
No 21
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.64 E-value=2.3e-16 Score=114.02 Aligned_cols=51 Identities=27% Similarity=0.574 Sum_probs=47.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHhhhhh
Q 039198 66 IKRGKFSEEEEQLIVNLHAVLGN-KWSAIATRLPGRTDNEIKNFWNTHLKKK 116 (351)
Q Consensus 66 lkrg~WT~EED~~Ll~lv~~~G~-kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ 116 (351)
+++|+||+|||++|+++|.+||. +|..||..|+|||+.||++||.++|+|.
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 47899999999999999999996 8999999999999999999999999873
No 22
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.63 E-value=2.3e-16 Score=114.08 Aligned_cols=51 Identities=31% Similarity=0.707 Sum_probs=48.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHhhhhh
Q 039198 66 IKRGKFSEEEEQLIVNLHAVLGN-KWSAIATRLPGRTDNEIKNFWNTHLKKK 116 (351)
Q Consensus 66 lkrg~WT~EED~~Ll~lv~~~G~-kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ 116 (351)
+++|+||+|||++|+++|.+||. +|..||..|+|||++|||+||.++|+|.
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 57899999999999999999996 6999999999999999999999999873
No 23
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.63 E-value=5.5e-17 Score=137.34 Aligned_cols=83 Identities=18% Similarity=0.348 Sum_probs=77.4
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccc---ccccccccccccccccC-----CCCCCC-CCCHHHHHHHH
Q 039198 10 INNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAG---LNRCGKSCRLRWTNYLR-----PDIKRG-KFSEEEEQLIV 80 (351)
Q Consensus 10 ~~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lg---p~Rs~kqCr~Rw~n~L~-----p~lkrg-~WT~EED~~Ll 80 (351)
.+..++++||+|||+.|+++|++||.+.|..|++.++ ++||+.+|++||.++++ |.+++| +|++||+.+|+
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv~ 91 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVL 91 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHHH
Confidence 3678999999999999999999999999999998742 68999999999999998 999999 99999999999
Q ss_pred HHHHHhCCchhh
Q 039198 81 NLHAVLGNKWSA 92 (351)
Q Consensus 81 ~lv~~~G~kW~~ 92 (351)
.++..+|++|.+
T Consensus 92 ~~h~~~gn~~~~ 103 (121)
T 2juh_A 92 AAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHccchhc
Confidence 999999999977
No 24
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.63 E-value=1.1e-16 Score=135.57 Aligned_cols=86 Identities=20% Similarity=0.282 Sum_probs=76.3
Q ss_pred CccccccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccc---cccccccccccccccc-----CCCCCCCCCCHHH
Q 039198 4 LQISDEINNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAG---LNRCGKSCRLRWTNYL-----RPDIKRGKFSEEE 75 (351)
Q Consensus 4 ~~~c~~~~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lg---p~Rs~kqCr~Rw~n~L-----~p~lkrg~WT~EE 75 (351)
+.+.......++++||+|||+.|+++|++||.++|..|++.++ ++||+.+|++||.+++ .|.+++|.|+++|
T Consensus 20 ~~~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e 99 (122)
T 2roh_A 20 SKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQE 99 (122)
T ss_dssp CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHH
T ss_pred CCCcCcCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHH
Confidence 3444455678999999999999999999999999999998532 5899999999999998 7999999999999
Q ss_pred -HHHHHHHHHHhCCc
Q 039198 76 -EQLIVNLHAVLGNK 89 (351)
Q Consensus 76 -D~~Ll~lv~~~G~k 89 (351)
+.+|+.++..||+.
T Consensus 100 ~~~~v~~~h~~~g~~ 114 (122)
T 2roh_A 100 LLDRVLAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhhH
Confidence 89999999999964
No 25
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.62 E-value=1.4e-16 Score=134.79 Aligned_cols=83 Identities=18% Similarity=0.203 Sum_probs=75.2
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccC----CCCCHHHHHHHHHHhhh-----hhhhcC-CCCccCcchh
Q 039198 62 LRPDIKRGKFSEEEEQLIVNLHAVLG-NKWSAIATRL----PGRTDNEIKNFWNTHLK-----KKLLQM-GIDPVTHRPR 130 (351)
Q Consensus 62 L~p~lkrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~l----pgRT~~qcr~RW~~~Lr-----~~ik~~-~~t~eEd~~l 130 (351)
+.+..++++||+|||+.|+++|++|| ++|+.|+..+ ++||+.+||+||+++++ |.++++ +|+++++..+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv 90 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV 90 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 56678899999999999999999999 5999999984 89999999999999999 888887 6777778889
Q ss_pred hhHHHHhCCCchHH
Q 039198 131 TDLNNVLANLPQLL 144 (351)
Q Consensus 131 ~~l~~~~Gn~w~~I 144 (351)
+++|..+||+|+.-
T Consensus 91 ~~~h~~~gn~~~~~ 104 (121)
T 2juh_A 91 LAAHAYWSQQQGKQ 104 (121)
T ss_dssp HHHHHHHHHHHCCS
T ss_pred HHHHHHHccchhcc
Confidence 99999999999873
No 26
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.60 E-value=2.4e-16 Score=117.24 Aligned_cols=56 Identities=30% Similarity=0.585 Sum_probs=53.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCC
Q 039198 11 NNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIK 67 (351)
Q Consensus 11 ~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lk 67 (351)
|.+++++||+|||++|+++|.+||.++|..||+.| ++|++.||+.||.++|+|.++
T Consensus 4 p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 4 GSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHF-PNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHC-SSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc-cCCCHHHHHHHHHHHcCCccC
Confidence 78999999999999999999999988999999999 699999999999999999875
No 27
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.59 E-value=3.4e-16 Score=113.20 Aligned_cols=52 Identities=48% Similarity=0.943 Sum_probs=49.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCC
Q 039198 13 IKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPD 65 (351)
Q Consensus 13 lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~ 65 (351)
+++++||+|||++|+++|.+||.++|..||+.+ ++|+++||+.||.++|+|.
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTS-TTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHc-CCCCHHHHHHHHHHHcCcC
Confidence 579999999999999999999988899999999 6999999999999999984
No 28
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.58 E-value=1.9e-15 Score=109.87 Aligned_cols=49 Identities=29% Similarity=0.369 Sum_probs=46.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-CchhhhhccCC--CCCHHHHHHHHHHhhhh
Q 039198 67 KRGKFSEEEEQLIVNLHAVLG-NKWSAIATRLP--GRTDNEIKNFWNTHLKK 115 (351)
Q Consensus 67 krg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lp--gRT~~qcr~RW~~~Lr~ 115 (351)
++|+||+|||++|+++|.+|| ++|..||..++ |||+.||++||.++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 589999999999999999999 79999999999 99999999999999874
No 29
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.57 E-value=2.3e-15 Score=112.25 Aligned_cols=54 Identities=13% Similarity=0.262 Sum_probs=50.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhhhh
Q 039198 63 RPDIKRGKFSEEEEQLIVNLHAVLG-NKWSAIATRLPGRTDNEIKNFWNTHLKKK 116 (351)
Q Consensus 63 ~p~lkrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ 116 (351)
.+.+.+++||+|||++|+++|.+|| ++|..||++|++||+.|||+||.++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 3578899999999999999999999 79999999999999999999999998753
No 30
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.56 E-value=2.5e-15 Score=127.40 Aligned_cols=79 Identities=19% Similarity=0.216 Sum_probs=70.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccC----CCCCHHHHHHHHHHhh-----hhhhhcCCCCccC-cchhh
Q 039198 63 RPDIKRGKFSEEEEQLIVNLHAVLG-NKWSAIATRL----PGRTDNEIKNFWNTHL-----KKKLLQMGIDPVT-HRPRT 131 (351)
Q Consensus 63 ~p~lkrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~l----pgRT~~qcr~RW~~~L-----r~~ik~~~~t~eE-d~~l~ 131 (351)
....++++||+|||+.|+++|++|| ++|..|++.+ ++||+.+||+||++++ .|.++++.|+++| +..++
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~ 105 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL 105 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence 3456789999999999999999999 5999999864 8999999999999999 5888898899988 67889
Q ss_pred hHHHHhCCCc
Q 039198 132 DLNNVLANLP 141 (351)
Q Consensus 132 ~l~~~~Gn~w 141 (351)
++|..+|++-
T Consensus 106 ~~h~~~g~~~ 115 (122)
T 2roh_A 106 AAQAYWSVDS 115 (122)
T ss_dssp HHHHHHHSSC
T ss_pred HHHHHHhhHH
Confidence 9999999874
No 31
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.56 E-value=3e-15 Score=113.34 Aligned_cols=53 Identities=28% Similarity=0.453 Sum_probs=47.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCC--CCCHHHHHHHHHHhhhhhh
Q 039198 65 DIKRGKFSEEEEQLIVNLHAVLG-NKWSAIATRLP--GRTDNEIKNFWNTHLKKKL 117 (351)
Q Consensus 65 ~lkrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lp--gRT~~qcr~RW~~~Lr~~i 117 (351)
..+|++||+|||++|+++|.+|| ++|..||+.++ +||+.|||+||++++++.+
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 35789999999999999999999 68999999876 9999999999999998865
No 32
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.56 E-value=4.9e-16 Score=112.26 Aligned_cols=52 Identities=33% Similarity=0.765 Sum_probs=47.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCC
Q 039198 13 IKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPD 65 (351)
Q Consensus 13 lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~ 65 (351)
+++++||+|||++|+++|.+||.++|..||+.+ ++|++.||+.||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYL-PNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTS-TTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc-CCCCHHHHHHHHHHHcCcC
Confidence 579999999999999999999988999999999 6999999999999999984
No 33
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=4.5e-15 Score=114.99 Aligned_cols=62 Identities=16% Similarity=0.117 Sum_probs=56.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC------CchhhhhccCCCCCHHHHHHHHHHhhhhhhhcCCCCc
Q 039198 63 RPDIKRGKFSEEEEQLIVNLHAVLG------NKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDP 124 (351)
Q Consensus 63 ~p~lkrg~WT~EED~~Ll~lv~~~G------~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~~~~t~ 124 (351)
+|.+.+++||+|||++|+++|.+|| .+|..||.+|++||+.||++||+++|.+.++.+-..|
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~~~p 70 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGIPVS 70 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 5788999999999999999999999 6899999999999999999999999999887765433
No 34
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.54 E-value=9.4e-16 Score=117.21 Aligned_cols=62 Identities=24% Similarity=0.372 Sum_probs=57.5
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccc--cccccccccccccccCCCCCCCCCC
Q 039198 10 INNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGL--NRCGKSCRLRWTNYLRPDIKRGKFS 72 (351)
Q Consensus 10 ~~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp--~Rs~kqCr~Rw~n~L~p~lkrg~WT 72 (351)
.+..++++||+|||++|+++|++||.++|..||+.+ + +|++.||+.||.++|+|.+.++..+
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~-~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHY-KFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHS-CCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHc-CcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 367899999999999999999999988999999999 5 8999999999999999999988754
No 35
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.52 E-value=2.6e-15 Score=139.64 Aligned_cols=73 Identities=18% Similarity=0.310 Sum_probs=63.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCc------hhhhhccCCCCCHHHHHHHHHHhhhhhhh-------------------
Q 039198 64 PDIKRGKFSEEEEQLIVNLHAVLGNK------WSAIATRLPGRTDNEIKNFWNTHLKKKLL------------------- 118 (351)
Q Consensus 64 p~lkrg~WT~EED~~Ll~lv~~~G~k------W~~IA~~lpgRT~~qcr~RW~~~Lr~~ik------------------- 118 (351)
+.+++++||+|||++|+++|.+||.+ |..||++|||||++|||+||+++|++.+.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~ 83 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL 83 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCc
Confidence 35788999999999999999999865 99999999999999999999999999985
Q ss_pred ----------cCCCCccCcchhhhHHHH
Q 039198 119 ----------QMGIDPVTHRPRTDLNNV 136 (351)
Q Consensus 119 ----------~~~~t~eEd~~l~~l~~~ 136 (351)
+..|+.+||-.|...+..
T Consensus 84 ikis~lp~siK~rftaeeDy~L~~~i~~ 111 (246)
T 1ign_A 84 IKTKVLPPSIKRKFSADEDYTLAIAVKK 111 (246)
T ss_dssp CEESSCCCCSCCCCCHHHHHHHHHHHHH
T ss_pred eeeeccCccccCccchhccHHHHHHHHH
Confidence 788999999888876665
No 36
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.51 E-value=1.7e-14 Score=106.88 Aligned_cols=50 Identities=22% Similarity=0.425 Sum_probs=46.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCC-CCCHHHHHHHHHHhh
Q 039198 64 PDIKRGKFSEEEEQLIVNLHAVLG-NKWSAIATRLP-GRTDNEIKNFWNTHL 113 (351)
Q Consensus 64 p~lkrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lp-gRT~~qcr~RW~~~L 113 (351)
..+.+++||+|||++|+++|++|| ++|..||++|+ +||+.|||+||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 346688999999999999999999 89999999999 999999999999875
No 37
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.50 E-value=2.5e-15 Score=113.77 Aligned_cols=55 Identities=31% Similarity=0.486 Sum_probs=49.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCccccccccc-ccccccccccccccccCCCC
Q 039198 12 NIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAG-LNRCGKSCRLRWTNYLRPDI 66 (351)
Q Consensus 12 ~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lg-p~Rs~kqCr~Rw~n~L~p~l 66 (351)
..+|++||+|||++|+++|++||.++|..||+.++ .+|++.||++||.++++|++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 46899999999999999999999989999998752 38999999999999999876
No 38
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.48 E-value=5.7e-15 Score=110.08 Aligned_cols=54 Identities=17% Similarity=0.511 Sum_probs=50.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCC
Q 039198 11 NNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPD 65 (351)
Q Consensus 11 ~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~ 65 (351)
+.+++++||+|||++|+++|++||.++|..||+.+ ++|++.||+.||.++|.+.
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~-~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQM-CTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHH-TTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHh-CCCCHHHHHHHHHHHccCC
Confidence 67999999999999999999999988999999999 6999999999999998765
No 39
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.45 E-value=1.1e-14 Score=105.76 Aligned_cols=49 Identities=31% Similarity=0.522 Sum_probs=46.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCcccccccccc--cccccccccccccccC
Q 039198 14 KKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGL--NRCGKSCRLRWTNYLR 63 (351)
Q Consensus 14 kKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp--~Rs~kqCr~Rw~n~L~ 63 (351)
++++||+|||++|+++|++||.++|..||+.+ + +|++.||++||.++++
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~-~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHY-KFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHS-CCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHc-CCCCCCHHHHHHHHHHHHc
Confidence 58999999999999999999988999999998 6 8999999999999875
No 40
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=5.7e-15 Score=111.82 Aligned_cols=57 Identities=23% Similarity=0.448 Sum_probs=52.3
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCC
Q 039198 10 INNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRG 69 (351)
Q Consensus 10 ~~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkrg 69 (351)
+|.+++++||+|||++|+++|+.||. +|..||+ + ++|++.||+.||.++|+|.++++
T Consensus 4 ~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~-~gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 4 GSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-I-IGRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp SSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-H-HSSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-c-cCcCHHHHHHHHHHHhChHhcCC
Confidence 38999999999999999999999997 9999999 5 46999999999999999877664
No 41
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.14 E-value=1.4e-14 Score=116.26 Aligned_cols=56 Identities=27% Similarity=0.288 Sum_probs=52.9
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhhh
Q 039198 61 YLRPDIKRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKK 116 (351)
Q Consensus 61 ~L~p~lkrg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ 116 (351)
.+.|.+.+|+||+|||++|+++|..||.+|..||.+|+|||+.||++||+++|++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 46788999999999999999999999999999999999999999999999998864
No 42
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.42 E-value=2.7e-14 Score=105.83 Aligned_cols=52 Identities=23% Similarity=0.456 Sum_probs=47.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 039198 11 NNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62 (351)
Q Consensus 11 ~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L 62 (351)
..+.+++||+|||++|+++|++||.++|..||+.++.+|+++||+.||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3466899999999999999999998899999999944899999999999865
No 43
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=2.1e-14 Score=111.19 Aligned_cols=60 Identities=23% Similarity=0.269 Sum_probs=55.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-----CCcccccccccccccccccccccccccCCCCCCCCC
Q 039198 11 NNIKKGPWTPEEDQKLIDYIRKHGH-----GSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKF 71 (351)
Q Consensus 11 ~~lkKg~WT~EED~~L~~~V~k~g~-----~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkrg~W 71 (351)
|++++++||+|||++|+++|.+||. .+|..||+.| ++||+.||+.||.++|.+.++.|..
T Consensus 4 p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~-~~Rt~~qcr~r~~~~l~~~~k~g~~ 68 (75)
T 2yum_A 4 GSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADEL-GNRTAKQVASQVQKYFIKLTKAGIP 68 (75)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHH-SSSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHh-CCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 8899999999999999999999996 6899999999 5999999999999999988887653
No 44
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.40 E-value=3.4e-13 Score=111.59 Aligned_cols=76 Identities=18% Similarity=0.211 Sum_probs=61.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccC----CCCCHHHHHHHHHHhhh-----hhhhcCCCCccCcch-hh
Q 039198 63 RPDIKRGKFSEEEEQLIVNLHAVLG-NKWSAIATRL----PGRTDNEIKNFWNTHLK-----KKLLQMGIDPVTHRP-RT 131 (351)
Q Consensus 63 ~p~lkrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~l----pgRT~~qcr~RW~~~Lr-----~~ik~~~~t~eEd~~-l~ 131 (351)
.+..++++||+|||+.|+++|++|| ++|..|+..+ ++||+.+||+||+++++ |.++++.-.|.+-.. ++
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv~ 87 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRVL 87 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHHH
Confidence 3467889999999999999999999 5999999976 89999999999999995 677777656655444 44
Q ss_pred hHHHHhC
Q 039198 132 DLNNVLA 138 (351)
Q Consensus 132 ~l~~~~G 138 (351)
+|+..+|
T Consensus 88 ~~~~~~~ 94 (105)
T 2aje_A 88 NAHGYWT 94 (105)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5665554
No 45
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.35 E-value=8.3e-14 Score=107.29 Aligned_cols=56 Identities=21% Similarity=0.310 Sum_probs=52.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCC
Q 039198 11 NNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKR 68 (351)
Q Consensus 11 ~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkr 68 (351)
|.+++++||+|||++|+++|.+||. +|..||+.+ ++|++.||+.||..++++.++.
T Consensus 5 p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~-~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 5 SSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLI-GSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHH-SSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHc-CCCCHHHHHHHHHHHHHHHHhc
Confidence 8899999999999999999999997 999999999 6999999999999998877665
No 46
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.32 E-value=1.7e-12 Score=103.07 Aligned_cols=67 Identities=21% Similarity=0.269 Sum_probs=52.1
Q ss_pred CCCCHHHHHHHHHHHHHhC-Cchhhhhcc----CCCCCHHHHHHHHHHhhh-----hhhhcCCCCc-cCcchhhhHHH
Q 039198 69 GKFSEEEEQLIVNLHAVLG-NKWSAIATR----LPGRTDNEIKNFWNTHLK-----KKLLQMGIDP-VTHRPRTDLNN 135 (351)
Q Consensus 69 g~WT~EED~~Ll~lv~~~G-~kW~~IA~~----lpgRT~~qcr~RW~~~Lr-----~~ik~~~~t~-eEd~~l~~l~~ 135 (351)
++||+|||+.|+++|++|| ++|+.|++. +++||+.+||+||+++++ |.++++.-.| +....++.+|.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a 78 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHA 78 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHH
Confidence 4799999999999999999 599999985 899999999999999995 4455443223 33334445444
No 47
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.31 E-value=1.8e-12 Score=100.60 Aligned_cols=52 Identities=12% Similarity=0.273 Sum_probs=47.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC----CchhhhhccCCCCCHHHHHHHHHHhhh
Q 039198 63 RPDIKRGKFSEEEEQLIVNLHAVLG----NKWSAIATRLPGRTDNEIKNFWNTHLK 114 (351)
Q Consensus 63 ~p~lkrg~WT~EED~~Ll~lv~~~G----~kW~~IA~~lpgRT~~qcr~RW~~~Lr 114 (351)
.+...+++||+|||.+|+.++..|| .+|..||.+|||||++||++||..+++
T Consensus 13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3557789999999999999999999 579999999999999999999997654
No 48
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.30 E-value=1.2e-12 Score=103.07 Aligned_cols=49 Identities=14% Similarity=0.295 Sum_probs=45.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHh
Q 039198 64 PDIKRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTH 112 (351)
Q Consensus 64 p~lkrg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~ 112 (351)
....+++||+|||++|+++|++||++|..||+++++||+.||+.||.++
T Consensus 14 ~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 14 GASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SSCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred ccccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 3456899999999999999999999999999999999999999999866
No 49
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.30 E-value=8.7e-13 Score=109.11 Aligned_cols=78 Identities=22% Similarity=0.360 Sum_probs=67.9
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccc---cccccccccccccccc-----CCCCCCCCCCHHHHH-HHH
Q 039198 10 INNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAG---LNRCGKSCRLRWTNYL-----RPDIKRGKFSEEEEQ-LIV 80 (351)
Q Consensus 10 ~~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lg---p~Rs~kqCr~Rw~n~L-----~p~lkrg~WT~EED~-~Ll 80 (351)
....++++||+|||+.|+++|++||.++|..|++.++ ++||+.+|++||.+++ .|.+++|.=+|+|-. +++
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv~ 87 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRVL 87 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHHH
Confidence 3678999999999999999999999999999998552 6899999999999988 689999988888774 488
Q ss_pred HHHHHhC
Q 039198 81 NLHAVLG 87 (351)
Q Consensus 81 ~lv~~~G 87 (351)
+++..+|
T Consensus 88 ~~~~~~~ 94 (105)
T 2aje_A 88 NAHGYWT 94 (105)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877765
No 50
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.27 E-value=1.5e-12 Score=103.35 Aligned_cols=69 Identities=22% Similarity=0.454 Sum_probs=60.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccc----cccccccccccccccccc-----CCCCCCC-CCCHHHHHHHHHHHHH
Q 039198 16 GPWTPEEDQKLIDYIRKHGHGSWRALPKL----AGLNRCGKSCRLRWTNYL-----RPDIKRG-KFSEEEEQLIVNLHAV 85 (351)
Q Consensus 16 g~WT~EED~~L~~~V~k~g~~nW~~IA~~----lgp~Rs~kqCr~Rw~n~L-----~p~lkrg-~WT~EED~~Ll~lv~~ 85 (351)
++||+|||+.|+++|++||.++|..|++. + ++||+.+|++||.+++ .|.+++| +..++...+++.++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~-~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNA-DHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTC-TTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhcccc-CCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999999999985 5 6899999999999987 5776665 5777777888888754
No 51
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.27 E-value=1.1e-12 Score=101.84 Aligned_cols=55 Identities=25% Similarity=0.389 Sum_probs=47.9
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCC
Q 039198 10 INNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKR 68 (351)
Q Consensus 10 ~~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkr 68 (351)
+|++++++||+|||++|+++|++||. .|..||+.+ +||+.||+.||.. |....+.
T Consensus 18 dP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l--gRt~~q~knRw~~-L~~~~~~ 72 (73)
T 2llk_A 18 GDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL--GRSASSVKDRCRL-MKDTCNT 72 (73)
T ss_dssp -CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH--TSCHHHHHHHHHH-CSCCCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh--CCCHHHHHHHHHH-HHHHccC
Confidence 38999999999999999999999997 699999988 6999999999985 5444443
No 52
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.17 E-value=9e-12 Score=97.99 Aligned_cols=49 Identities=18% Similarity=0.429 Sum_probs=46.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc
Q 039198 11 NNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 61 (351)
Q Consensus 11 ~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~ 61 (351)
....+++||+|||++|+++|++|| ++|..||+.++ +||+.||+.||.++
T Consensus 14 ~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 14 GASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp SSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred ccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 678899999999999999999999 79999999995 89999999999998
No 53
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.75 E-value=4.3e-12 Score=101.78 Aligned_cols=53 Identities=23% Similarity=0.427 Sum_probs=49.6
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCC
Q 039198 10 INNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRP 64 (351)
Q Consensus 10 ~~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p 64 (351)
.|++++|+||+|||++|+++|.+||. +|..||+.+ ++||+.||+.||.++|+.
T Consensus 11 ~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l-~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 11 RENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMV-GSKTVSQCKNFYFNYKKR 63 (89)
Confidence 48899999999999999999999997 899999999 699999999999998764
No 54
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.08 E-value=1.5e-10 Score=86.92 Aligned_cols=49 Identities=20% Similarity=0.410 Sum_probs=45.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchhhhh---ccCCCCCHHHHHHHHHHhhhh
Q 039198 67 KRGKFSEEEEQLIVNLHAVLGNKWSAIA---TRLPGRTDNEIKNFWNTHLKK 115 (351)
Q Consensus 67 krg~WT~EED~~Ll~lv~~~G~kW~~IA---~~lpgRT~~qcr~RW~~~Lr~ 115 (351)
.+.+||+|||+.|++.|++||.+|..|+ ..+++||+..+++||+++.+.
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 5789999999999999999999999999 577899999999999987664
No 55
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.06 E-value=1.4e-10 Score=93.95 Aligned_cols=49 Identities=22% Similarity=0.464 Sum_probs=44.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CchhhhhccCCCCCHHHHHHHHHHhhhh
Q 039198 67 KRGKFSEEEEQLIVNLHAVLG----NKWSAIATRLPGRTDNEIKNFWNTHLKK 115 (351)
Q Consensus 67 krg~WT~EED~~Ll~lv~~~G----~kW~~IA~~lpgRT~~qcr~RW~~~Lr~ 115 (351)
.+++||.|||++|++++..|| .+|..||.++||||.++|++||..++..
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~d 59 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED 59 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 467999999999999999996 5699999999999999999999987755
No 56
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.06 E-value=1.9e-11 Score=94.83 Aligned_cols=52 Identities=13% Similarity=0.376 Sum_probs=47.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC---CCcccccccccccccccccccccccccC
Q 039198 11 NNIKKGPWTPEEDQKLIDYIRKHGH---GSWRALPKLAGLNRCGKSCRLRWTNYLR 63 (351)
Q Consensus 11 ~~lkKg~WT~EED~~L~~~V~k~g~---~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~ 63 (351)
+...+++||+|||++|+.+|.+||. ..|.+||+.| |+||..||+.||..++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~v-pGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCV-PSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGC-SSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc-CCCCHHHHHHHHHHHHH
Confidence 6788999999999999999999983 4799999999 69999999999998764
No 57
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=4.3e-09 Score=78.51 Aligned_cols=47 Identities=9% Similarity=0.138 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhh
Q 039198 67 KRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHL 113 (351)
Q Consensus 67 krg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~L 113 (351)
..++||+||++++++++..||.+|..||..||+||..+|+.+|+...
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 45789999999999999999999999999999999999999997543
No 58
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.71 E-value=1.3e-08 Score=82.24 Aligned_cols=67 Identities=13% Similarity=0.179 Sum_probs=59.4
Q ss_pred ccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccC-----CCCCHHHHHHHHHHhhhhhhhcCC
Q 039198 51 GKSCRLRWTNYLRPDIKRGKFSEEEEQLIVNLHAVLGNKWSAIATRL-----PGRTDNEIKNFWNTHLKKKLLQMG 121 (351)
Q Consensus 51 ~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kW~~IA~~l-----pgRT~~qcr~RW~~~Lr~~ik~~~ 121 (351)
+.=+.++|.++|.+ ++||.||+..|++|+++||.+|..|+..+ ++||..++|+||..+.++.++..+
T Consensus 17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~ 88 (93)
T 3hm5_A 17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34578899999976 89999999999999999999999999988 589999999999998888776553
No 59
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.70 E-value=1.8e-09 Score=87.46 Aligned_cols=48 Identities=10% Similarity=0.324 Sum_probs=42.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhC---CCCccccccccccccccccccccccccc
Q 039198 14 KKGPWTPEEDQKLIDYIRKHG---HGSWRALPKLAGLNRCGKSCRLRWTNYL 62 (351)
Q Consensus 14 kKg~WT~EED~~L~~~V~k~g---~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L 62 (351)
.+++||+|||++|+.++.+|+ ...|..||+.+ |+||..+|+.||..++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~v-pGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAV-EGRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHS-TTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc-CCCCHHHHHHHHHHHH
Confidence 467999999999999999997 34799999999 5999999999998864
No 60
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.62 E-value=3.7e-08 Score=76.08 Aligned_cols=50 Identities=16% Similarity=0.274 Sum_probs=44.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC----CchhhhhccCCCCCHHHHHHHHHHhhhh
Q 039198 65 DIKRGKFSEEEEQLIVNLHAVLG----NKWSAIATRLPGRTDNEIKNFWNTHLKK 115 (351)
Q Consensus 65 ~lkrg~WT~EED~~Ll~lv~~~G----~kW~~IA~~lpgRT~~qcr~RW~~~Lr~ 115 (351)
..+++.||.|||++|.+++.+|+ .+|..||..+ |||.++|+.||..+.+.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 45678999999999999999997 4599999998 99999999999876554
No 61
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.61 E-value=8.4e-09 Score=77.43 Aligned_cols=50 Identities=14% Similarity=0.293 Sum_probs=44.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCccccc---ccccccccccccccccccccC
Q 039198 12 NIKKGPWTPEEDQKLIDYIRKHGHGSWRALP---KLAGLNRCGKSCRLRWTNYLR 63 (351)
Q Consensus 12 ~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA---~~lgp~Rs~kqCr~Rw~n~L~ 63 (351)
..++++||+|||+.|++.|++||. .|..|+ .++ ++|+..++..||.++.+
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~-~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQ-KGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCC-TTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCc-cCcccchHHHHHHHHHh
Confidence 347899999999999999999998 999999 465 68999999999998654
No 62
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.55 E-value=7.2e-08 Score=89.12 Aligned_cols=50 Identities=20% Similarity=0.345 Sum_probs=46.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhh
Q 039198 66 IKRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKK 115 (351)
Q Consensus 66 lkrg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~Lr~ 115 (351)
-..++||+||++++++++.+||.+|..||+.+++||..||+++|+++.++
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999987764
No 63
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.49 E-value=1.4e-07 Score=70.15 Aligned_cols=47 Identities=23% Similarity=0.438 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCc-hhhhhc-cCCCCCHHHHHHHHHHhhh
Q 039198 68 RGKFSEEEEQLIVNLHAVL--------GNK-WSAIAT-RLPGRTDNEIKNFWNTHLK 114 (351)
Q Consensus 68 rg~WT~EED~~Ll~lv~~~--------G~k-W~~IA~-~lpgRT~~qcr~RW~~~Lr 114 (351)
|.+||+|||+.|+++|.+| |++ |..+|+ .+|++|-.+||+||..+|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 544 999999 8999999999999998775
No 64
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=6.1e-08 Score=72.21 Aligned_cols=50 Identities=14% Similarity=0.204 Sum_probs=44.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 039198 11 NNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62 (351)
Q Consensus 11 ~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L 62 (351)
.....++||+||++++.+++.+||. +|..||+.+ ++|+..||..+|....
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l-~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYL-ERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHC-TTSCHHHHHHHHHHHT
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHc-CCCCHHHHHHHHHHhc
Confidence 4456799999999999999999995 999999998 6999999999986543
No 65
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.39 E-value=4e-08 Score=75.91 Aligned_cols=51 Identities=18% Similarity=0.282 Sum_probs=44.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC---CCcccccccccccccccccccccccccC
Q 039198 11 NNIKKGPWTPEEDQKLIDYIRKHGH---GSWRALPKLAGLNRCGKSCRLRWTNYLR 63 (351)
Q Consensus 11 ~~lkKg~WT~EED~~L~~~V~k~g~---~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~ 63 (351)
.+.+++.||.|||++|..++.+|+. ..|..||+.+| |+..+|+.||..+..
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg--Rt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC--CCHHHHHHHHHHHHH
Confidence 3566889999999999999999984 46999999985 999999999987654
No 66
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.30 E-value=3.8e-07 Score=92.65 Aligned_cols=46 Identities=22% Similarity=0.389 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhh
Q 039198 69 GKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLK 114 (351)
Q Consensus 69 g~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~Lr 114 (351)
.+||.||-+++++++.+||.+|..||..++.||..|||.+|.++-+
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999975444
No 67
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.23 E-value=1e-06 Score=68.27 Aligned_cols=48 Identities=21% Similarity=0.291 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----chhhhhccCCCCCHHHHHHHHHHhhhh
Q 039198 68 RGKFSEEEEQLIVNLHAVLGN----KWSAIATRLPGRTDNEIKNFWNTHLKK 115 (351)
Q Consensus 68 rg~WT~EED~~Ll~lv~~~G~----kW~~IA~~lpgRT~~qcr~RW~~~Lr~ 115 (351)
...||.||+.+|.+++..|+. +|..||..+||||..+|+.||..+++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 468999999999999999973 599999999999999999999876543
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.18 E-value=2.8e-07 Score=68.45 Aligned_cols=48 Identities=23% Similarity=0.490 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCCcccccc-cccccccccccccccccccC
Q 039198 15 KGPWTPEEDQKLIDYIRKH--------GHGSWRALPK-LAGLNRCGKSCRLRWTNYLR 63 (351)
Q Consensus 15 Kg~WT~EED~~L~~~V~k~--------g~~nW~~IA~-~lgp~Rs~kqCr~Rw~n~L~ 63 (351)
|.+||+|||+.|+++|.+| |..-|+.+++ .+ |++|..+||+||.++|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~-~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSL-TQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCS-SSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHC-CCCCHHHHHHHHHHHcc
Confidence 6789999999999999999 4445999998 66 89999999999998775
No 69
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.02 E-value=1.1e-06 Score=67.95 Aligned_cols=49 Identities=22% Similarity=0.424 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CCcccccccccccccccccccccccccC
Q 039198 14 KKGPWTPEEDQKLIDYIRKHGH---GSWRALPKLAGLNRCGKSCRLRWTNYLR 63 (351)
Q Consensus 14 kKg~WT~EED~~L~~~V~k~g~---~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~ 63 (351)
....||.||+++|..++..|+. +.|..||+.+| +|+..+|+.||..++.
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR 58 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence 3468999999999999999975 57999999994 8999999999998754
No 70
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.86 E-value=3e-06 Score=78.34 Aligned_cols=49 Identities=29% Similarity=0.474 Sum_probs=44.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccC
Q 039198 13 IKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLR 63 (351)
Q Consensus 13 lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~ 63 (351)
....+||+||++++++++.+||. +|..||+.++ +||..||+.+|.++.+
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 45779999999999999999995 9999999995 9999999999988764
No 71
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.79 E-value=4.5e-05 Score=57.05 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=44.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhc-cCCCCCHHHHHHHHHH
Q 039198 63 RPDIKRGKFSEEEEQLIVNLHAVLGNKWSAIAT-RLPGRTDNEIKNFWNT 111 (351)
Q Consensus 63 ~p~lkrg~WT~EED~~Ll~lv~~~G~kW~~IA~-~lpgRT~~qcr~RW~~ 111 (351)
.|.++...||+||-.+..+.+.+||.+|..|++ .+++|+..+|...|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 367778899999999999999999999999999 5899999999988753
No 72
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.74 E-value=4.4e-05 Score=61.16 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHHHHHHHhCC---chhhhhccCCCCCHHHHHHHHHHhhhhhhh
Q 039198 69 GKFSEEEEQLIVNLHAVLGN---KWSAIATRLPGRTDNEIKNFWNTHLKKKLL 118 (351)
Q Consensus 69 g~WT~EED~~Ll~lv~~~G~---kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik 118 (351)
--||.|||..|+..+++-|. .|..||+.|.+|+.+|+++||+.+++-.-+
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 35999999999999999996 699999999999999999999987765433
No 73
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.64 E-value=1.1e-05 Score=62.29 Aligned_cols=44 Identities=11% Similarity=0.309 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC---Ccccccccccccccccccccccc
Q 039198 15 KGPWTPEEDQKLIDYIRKHGHG---SWRALPKLAGLNRCGKSCRLRWT 59 (351)
Q Consensus 15 Kg~WT~EED~~L~~~V~k~g~~---nW~~IA~~lgp~Rs~kqCr~Rw~ 59 (351)
.+.||.||+++|..++..|..+ .|.+||+.+ |+|+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~V-pGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYV-KGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGS-CSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHc-CCCCHHHHHHHHH
Confidence 5689999999999999999753 799999999 5899999999996
No 74
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.58 E-value=1.7e-05 Score=61.31 Aligned_cols=43 Identities=19% Similarity=0.344 Sum_probs=38.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----chhhhhccCCCCCHHHHHHHHH
Q 039198 68 RGKFSEEEEQLIVNLHAVLGN----KWSAIATRLPGRTDNEIKNFWN 110 (351)
Q Consensus 68 rg~WT~EED~~Ll~lv~~~G~----kW~~IA~~lpgRT~~qcr~RW~ 110 (351)
.+.||.||+++|..++..|+. +|.+||..+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 457999999999999999984 5999999999999999998874
No 75
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.45 E-value=0.00014 Score=70.00 Aligned_cols=100 Identities=20% Similarity=0.254 Sum_probs=77.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccc-------ccccc---------------------------
Q 039198 16 GPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRL-------RWTNY--------------------------- 61 (351)
Q Consensus 16 g~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~-------Rw~n~--------------------------- 61 (351)
+.||..+...++.++.+||..+|..||..++ +++...++. ||...
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999995 788776622 22100
Q ss_pred -------------c---CCCCCCCCCCHHHHHHHHHHHHHhCC----chhhhhc------------cCCCCCHHHHHHHH
Q 039198 62 -------------L---RPDIKRGKFSEEEEQLIVNLHAVLGN----KWSAIAT------------RLPGRTDNEIKNFW 109 (351)
Q Consensus 62 -------------L---~p~lkrg~WT~EED~~Ll~lv~~~G~----kW~~IA~------------~lpgRT~~qcr~RW 109 (351)
| -+.-+...||.|||..|+-++.+||- .|..|.. .+..||..++..|.
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 0 01223457999999999999999994 4999962 33579999999999
Q ss_pred HHhhhhh
Q 039198 110 NTHLKKK 116 (351)
Q Consensus 110 ~~~Lr~~ 116 (351)
..+++-.
T Consensus 270 ~tLi~~i 276 (304)
T 1ofc_X 270 NTLITLI 276 (304)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888643
No 76
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.54 E-value=2.1e-05 Score=59.85 Aligned_cols=44 Identities=14% Similarity=0.348 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHHhCC---chhhhhccCCCCCHHHHHHHHHHhhh
Q 039198 70 KFSEEEEQLIVNLHAVLGN---KWSAIATRLPGRTDNEIKNFWNTHLK 114 (351)
Q Consensus 70 ~WT~EED~~Ll~lv~~~G~---kW~~IA~~lpgRT~~qcr~RW~~~Lr 114 (351)
.||.|||..|+..+++-|. .|..||..| +|+.+|+.+||..+++
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 5999999999999999996 699999999 9999999999987665
No 77
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.30 E-value=0.00031 Score=56.55 Aligned_cols=44 Identities=18% Similarity=0.180 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHH
Q 039198 68 RGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNT 111 (351)
Q Consensus 68 rg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~ 111 (351)
...||+||.++..+....||.+|..||..||+||..+|...|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 36799999999999999999999999999999999999998853
No 78
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.30 E-value=9.2e-05 Score=55.33 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=43.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccc-ccccccccccccccccc
Q 039198 11 NNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPK-LAGLNRCGKSCRLRWTN 60 (351)
Q Consensus 11 ~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~-~lgp~Rs~kqCr~Rw~n 60 (351)
|.++...||+||-++..+++.+||. +|..|++ .+ +.|+..+|..-|..
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v-~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELL-PNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSC-TTSCHHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHc-CCCcHHHHHHHHhc
Confidence 7888899999999999999999997 9999998 57 69999999877753
No 79
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.15 E-value=0.00073 Score=51.48 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhhhc-cCCCCCHHHHHHHHH
Q 039198 68 RGKFSEEEEQLIVNLHAVLGNKWSAIAT-RLPGRTDNEIKNFWN 110 (351)
Q Consensus 68 rg~WT~EED~~Ll~lv~~~G~kW~~IA~-~lpgRT~~qcr~RW~ 110 (351)
...||+||-.+..+.+..||.+|..|++ .+++|+..+|...|.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence 4589999999999999999999999999 589999999999886
No 80
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.01 E-value=0.0013 Score=52.95 Aligned_cols=53 Identities=13% Similarity=0.177 Sum_probs=46.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhhhccC-----CCCCHHHHHHHHHHhhhhhhhcC
Q 039198 68 RGKFSEEEEQLIVNLHAVLGNKWSAIATRL-----PGRTDNEIKNFWNTHLKKKLLQM 120 (351)
Q Consensus 68 rg~WT~EED~~Ll~lv~~~G~kW~~IA~~l-----pgRT~~qcr~RW~~~Lr~~ik~~ 120 (351)
...||.||...|++|+.+|+-+|.-|+... +.||-.++|.||..+.++.++..
T Consensus 30 ~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 368999999999999999999999999776 37999999999999888776543
No 81
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.88 E-value=0.00083 Score=52.56 Aligned_cols=50 Identities=14% Similarity=0.421 Sum_probs=40.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----------CchhhhhccCC----CCCHHHHHHHHHHhhhhh
Q 039198 67 KRGKFSEEEEQLIVNLHAVLG----------NKWSAIATRLP----GRTDNEIKNFWNTHLKKK 116 (351)
Q Consensus 67 krg~WT~EED~~Ll~lv~~~G----------~kW~~IA~~lp----gRT~~qcr~RW~~~Lr~~ 116 (351)
+...||.+|-..||.+...+. ..|..||..|. .||+.||+.+|.++.+..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 356899999999999997531 13999998872 799999999999877664
No 82
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=96.75 E-value=0.00042 Score=55.91 Aligned_cols=49 Identities=16% Similarity=0.304 Sum_probs=42.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccccc----cccccccccccccccc
Q 039198 13 IKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAG----LNRCGKSCRLRWTNYL 62 (351)
Q Consensus 13 lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lg----p~Rs~kqCr~Rw~n~L 62 (351)
++..+||.||++.|++++++|+. .|..|+..+. ++||..+++.||..+.
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 44589999999999999999996 9999998773 4799999999998653
No 83
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=96.73 E-value=0.00037 Score=70.83 Aligned_cols=47 Identities=28% Similarity=0.475 Sum_probs=42.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 039198 14 KKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62 (351)
Q Consensus 14 kKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L 62 (351)
...+||.||-+++++++.+||. +|..||+.+| .|+..||+..|.++.
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~Vg-TKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 4689999999999999999996 9999999997 899999999987643
No 84
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.45 E-value=0.00025 Score=55.60 Aligned_cols=49 Identities=24% Similarity=0.603 Sum_probs=39.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---------CCcccccccc---ccccccccccccccccc
Q 039198 14 KKGPWTPEEDQKLIDYIRKHGH---------GSWRALPKLA---GLNRCGKSCRLRWTNYL 62 (351)
Q Consensus 14 kKg~WT~EED~~L~~~V~k~g~---------~nW~~IA~~l---gp~Rs~kqCr~Rw~n~L 62 (351)
+...||.+|-..|+++...+.. .-|..||..| |..|++.||+.+|.++.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5689999999999999875321 1599999754 57899999999998754
No 85
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.35 E-value=0.0011 Score=50.46 Aligned_cols=44 Identities=11% Similarity=0.151 Sum_probs=39.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCcccccc-cccccccccccccccc
Q 039198 14 KKGPWTPEEDQKLIDYIRKHGHGSWRALPK-LAGLNRCGKSCRLRWT 59 (351)
Q Consensus 14 kKg~WT~EED~~L~~~V~k~g~~nW~~IA~-~lgp~Rs~kqCr~Rw~ 59 (351)
....||+||-++..+++.+||. +|..|++ .+ ++|+..+|..-|.
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v-~~Kt~~~~v~fYY 51 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFL-PWKSLTSIIEYYY 51 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTC-SSSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHc-CCCCHHHHHHHHH
Confidence 4568999999999999999997 9999998 58 6999999977765
No 86
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.29 E-value=0.0043 Score=55.66 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=29.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC--CCCccccccccc-ccccccc
Q 039198 12 NIKKGPWTPEEDQKLIDYIRKHG--HGSWRALPKLAG-LNRCGKS 53 (351)
Q Consensus 12 ~lkKg~WT~EED~~L~~~V~k~g--~~nW~~IA~~lg-p~Rs~kq 53 (351)
.-....||..|-..|+.++.+|| .+.|..|++... .+++...
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~ 48 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETD 48 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHH
Confidence 34567899999999999999999 568999975321 2444444
No 87
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.27 E-value=0.0013 Score=52.95 Aligned_cols=44 Identities=11% Similarity=0.295 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccc
Q 039198 15 KGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTN 60 (351)
Q Consensus 15 Kg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n 60 (351)
...||+||.+++.++...||. +|..|++.+ +.|+..+|.+.|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l-~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK-NFGLIASFL-ERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT-CHHHHHHTC-TTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHHHHc-CCCCHHHHHHHHhc
Confidence 468999999999999999996 999999988 69999999877743
No 88
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.84 E-value=0.015 Score=57.39 Aligned_cols=101 Identities=23% Similarity=0.281 Sum_probs=75.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccc-------cccccc---------------------------
Q 039198 16 GPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCR-------LRWTNY--------------------------- 61 (351)
Q Consensus 16 g~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr-------~Rw~n~--------------------------- 61 (351)
+.||.-|=..++.++.+||..+-..||..++++++...++ .||..+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999989999999996567766652 111110
Q ss_pred -------------cC----CC-CCCCCCCHHHHHHHHHHHHHhCC----chhhhhcc------------CCCCCHHHHHH
Q 039198 62 -------------LR----PD-IKRGKFSEEEEQLIVNLHAVLGN----KWSAIATR------------LPGRTDNEIKN 107 (351)
Q Consensus 62 -------------L~----p~-lkrg~WT~EED~~Ll~lv~~~G~----kW~~IA~~------------lpgRT~~qcr~ 107 (351)
|. +. -++..||.+||..|+-++.+||- .|..|-.. +..||...+..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 00 11 13456999999999999999994 49999432 35799999999
Q ss_pred HHHHhhhhh
Q 039198 108 FWNTHLKKK 116 (351)
Q Consensus 108 RW~~~Lr~~ 116 (351)
|...+++-.
T Consensus 284 Rc~tLi~~I 292 (374)
T 2y9y_A 284 RGNTLLQCL 292 (374)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888654
No 89
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=94.82 E-value=0.0015 Score=49.75 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=41.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC--CCcccccccccccccccccccccccccC
Q 039198 14 KKGPWTPEEDQKLIDYIRKHGH--GSWRALPKLAGLNRCGKSCRLRWTNYLR 63 (351)
Q Consensus 14 kKg~WT~EED~~L~~~V~k~g~--~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~ 63 (351)
.--.||.|||..|+..+++.|. .-|..||+.+ +|++.|+..||...++
T Consensus 13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK 62 (70)
Confidence 3457999999999999999885 3699999888 5999999999987543
No 90
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=95.63 E-value=0.0019 Score=51.79 Aligned_cols=46 Identities=20% Similarity=0.405 Sum_probs=40.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC--CCccccccccccccccccccccccc
Q 039198 14 KKGPWTPEEDQKLIDYIRKHGH--GSWRALPKLAGLNRCGKSCRLRWTN 60 (351)
Q Consensus 14 kKg~WT~EED~~L~~~V~k~g~--~nW~~IA~~lgp~Rs~kqCr~Rw~n 60 (351)
+--.||.|||..|+..+++.|. .-|..||+.+| +|++.|+..|++.
T Consensus 32 ~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~ 79 (95)
T 1ug2_A 32 KVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRE 79 (95)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHH
T ss_pred EEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHH
Confidence 3347999999999999999875 46999999996 8999999999965
No 91
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=94.36 E-value=0.068 Score=51.42 Aligned_cols=80 Identities=15% Similarity=0.172 Sum_probs=62.6
Q ss_pred CCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhhh--------------------------------
Q 039198 69 GKFSEEEEQLIVNLHAVLG-NKWSAIATRLPGRTDNEIKNFWNTHLKK-------------------------------- 115 (351)
Q Consensus 69 g~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcr~RW~~~Lr~-------------------------------- 115 (351)
+.||..+...++.++.+|| ..|..||..++|+|...|+.........
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l~ 190 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALD 190 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999 6799999999999999886653211111
Q ss_pred -h-----------------hhcCCCCccCcchhhhHHHHhCC----CchHHhhhc
Q 039198 116 -K-----------------LLQMGIDPVTHRPRTDLNNVLAN----LPQLLAAAN 148 (351)
Q Consensus 116 -~-----------------ik~~~~t~eEd~~l~~l~~~~Gn----~w~~Ia~~~ 148 (351)
+ -+...||.+||+-|+-.+.+||- .|..|...+
T Consensus 191 ~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~I 245 (304)
T 1ofc_X 191 QKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAI 245 (304)
T ss_dssp HHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHH
Confidence 0 11256899999999999999995 788886543
No 92
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.30 E-value=0.085 Score=39.59 Aligned_cols=48 Identities=13% Similarity=0.057 Sum_probs=40.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCc---hhhhhccC--CCCCHHHHHHHHHHhh
Q 039198 66 IKRGKFSEEEEQLIVNLHAVLGNK---WSAIATRL--PGRTDNEIKNFWNTHL 113 (351)
Q Consensus 66 lkrg~WT~EED~~Ll~lv~~~G~k---W~~IA~~l--pgRT~~qcr~RW~~~L 113 (351)
..+-.||+|.-++.+++|..+|.. +..|-+.| +|.|..+|+.+.+.|-
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999954 78888877 5899999999887653
No 93
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=93.47 E-value=0.052 Score=48.50 Aligned_cols=38 Identities=24% Similarity=0.365 Sum_probs=30.0
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccc
Q 039198 5 QISDEINNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPK 43 (351)
Q Consensus 5 ~~c~~~~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~ 43 (351)
+++.+ +......||.+||..|+..|.+||.++|..|-.
T Consensus 125 ~~~~~-~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~ 162 (211)
T 4b4c_A 125 PCHTK-AAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM 162 (211)
T ss_dssp CSCCC-CCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCC-CCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence 33444 333455799999999999999999999999965
No 94
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=92.44 E-value=0.043 Score=44.09 Aligned_cols=48 Identities=17% Similarity=0.321 Sum_probs=39.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccccc----ccccccccccccccc
Q 039198 13 IKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAG----LNRCGKSCRLRWTNY 61 (351)
Q Consensus 13 lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lg----p~Rs~kqCr~Rw~n~ 61 (351)
++...||.||.+.|+++|++|+. .|-.|+.... ..|+..++++||...
T Consensus 28 L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V 79 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence 44578999999999999999986 8999986553 368888899988764
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=89.98 E-value=0.14 Score=48.45 Aligned_cols=27 Identities=44% Similarity=0.757 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCcccccc
Q 039198 17 PWTPEEDQKLIDYIRKHGHGSWRALPK 43 (351)
Q Consensus 17 ~WT~EED~~L~~~V~k~g~~nW~~IA~ 43 (351)
.|+.+||..|+..|.+||.|+|..|..
T Consensus 170 ~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 170 NWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 599999999999999999999999974
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=87.18 E-value=0.37 Score=45.56 Aligned_cols=27 Identities=19% Similarity=0.426 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHHHHHHHhC-Cchhhhhc
Q 039198 69 GKFSEEEEQLIVNLHAVLG-NKWSAIAT 95 (351)
Q Consensus 69 g~WT~EED~~Ll~lv~~~G-~kW~~IA~ 95 (351)
..|+.+||..|+..|.+|| |.|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 3599999999999999999 99999973
No 97
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=77.30 E-value=0.9 Score=33.95 Aligned_cols=47 Identities=13% Similarity=0.136 Sum_probs=34.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCC---ccccccccc-ccccccccccccc
Q 039198 12 NIKKGPWTPEEDQKLIDYIRKHGHGS---WRALPKLAG-LNRCGKSCRLRWT 59 (351)
Q Consensus 12 ~lkKg~WT~EED~~L~~~V~k~g~~n---W~~IA~~lg-p~Rs~kqCr~Rw~ 59 (351)
...+-.||+|.-+.++++|+..|. + ++.|.+.|+ ++.|..++.-|.+
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~-~~AtPk~Il~~M~v~gLT~~~VkSHLQ 54 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQ 54 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCC-CCCCcHHHHHHcCCCCCCHHHHHHHHH
Confidence 456789999999999999999994 4 567776665 2455555544433
No 98
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=54.77 E-value=2.9 Score=34.73 Aligned_cols=45 Identities=16% Similarity=0.258 Sum_probs=33.6
Q ss_pred Ccccccccccccccc----cccccccccccCCCCCCCCCCHHHHHHHHHHHH
Q 039198 37 SWRALPKLAGLNRCG----KSCRLRWTNYLRPDIKRGKFSEEEEQLIVNLHA 84 (351)
Q Consensus 37 nW~~IA~~lgp~Rs~----kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~ 84 (351)
.|.+||..+|...+. ...+..|.++|.|-- ..+++|-..|.+-|.
T Consensus 65 ~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE---~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 65 KWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD---SLSPEEHRRLEKEVL 113 (121)
T ss_dssp CHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH---HCCHHHHHHHHHHHH
T ss_pred cHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH---CcCHHHHhhHHHHHH
Confidence 699999999855433 456888888887543 378899999887664
No 99
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=52.20 E-value=9.1 Score=31.11 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=31.6
Q ss_pred HHHHHHHHhCC--------chhhhhccCCCCCHHHHHHHHHHhhhhh
Q 039198 78 LIVNLHAVLGN--------KWSAIATRLPGRTDNEIKNFWNTHLKKK 116 (351)
Q Consensus 78 ~Ll~lv~~~G~--------kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ 116 (351)
+|..+|.+.|| .|..||..|+--.+..+|..|..+|-+.
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 47888888886 5999999986444889999999988774
No 100
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=48.94 E-value=21 Score=28.27 Aligned_cols=39 Identities=18% Similarity=0.337 Sum_probs=29.5
Q ss_pred HHHHHHHHhCC--------chhhhhccCCCCC----HHHHHHHHHHhhhhh
Q 039198 78 LIVNLHAVLGN--------KWSAIATRLPGRT----DNEIKNFWNTHLKKK 116 (351)
Q Consensus 78 ~Ll~lv~~~G~--------kW~~IA~~lpgRT----~~qcr~RW~~~Lr~~ 116 (351)
+|..+|.+.|| .|..||..|+--. +.++|..|..+|.+.
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 47777888875 5999999995322 478888898888764
No 101
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=48.74 E-value=19 Score=29.29 Aligned_cols=39 Identities=13% Similarity=0.290 Sum_probs=30.0
Q ss_pred HHHHHHHHhCC--------chhhhhccCCCCC----HHHHHHHHHHhhhhh
Q 039198 78 LIVNLHAVLGN--------KWSAIATRLPGRT----DNEIKNFWNTHLKKK 116 (351)
Q Consensus 78 ~Ll~lv~~~G~--------kW~~IA~~lpgRT----~~qcr~RW~~~Lr~~ 116 (351)
+|..+|.+.|| .|..||..|+--. +..+|..|..+|.+.
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~y 94 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPY 94 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 47788888885 5999999984222 577889899888774
No 102
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=45.97 E-value=29 Score=34.12 Aligned_cols=40 Identities=25% Similarity=0.433 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHHHHhC-CchhhhhccCC-CCCHHHHHHH
Q 039198 69 GKFSEEEEQLIVNLHAVLG-NKWSAIATRLP-GRTDNEIKNF 108 (351)
Q Consensus 69 g~WT~EED~~Ll~lv~~~G-~kW~~IA~~lp-gRT~~qcr~R 108 (351)
+.||.-+=..++.++.+|| .+-..||..+. |+|...|+..
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y 165 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAY 165 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHH
Confidence 4699999999999999999 56999999997 8999888743
No 103
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=44.73 E-value=20 Score=29.56 Aligned_cols=93 Identities=18% Similarity=0.256 Sum_probs=60.0
Q ss_pred CCCCCCCCHHHH--HHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC-
Q 039198 12 NIKKGPWTPEED--QKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIVNLHAVLGN- 88 (351)
Q Consensus 12 ~lkKg~WT~EED--~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~- 88 (351)
+.=+.+|.+.+. +.|..+.+..|. ....++..-| |.- . =-+|..+|.+.||
T Consensus 4 ~~~~~r~~~~~~Fl~~L~~F~~~rGt-pl~~~P~i~g--k~l-D----------------------L~~Ly~~V~~~GG~ 57 (121)
T 2rq5_A 4 GSLGRRWGPNVQRLACIKKHLRSQGI-TMDELPLIGG--CEL-D----------------------LACFFRLINEMGGM 57 (121)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHHTTC-CCSSCCEETT--EEC-C----------------------HHHHHHHHHHTTSH
T ss_pred HHhhHhcCCcHHHHHHHHHHHHHcCC-CCCCCCcCCC--Eec-c----------------------HHHHHHHHHHcCcH
Confidence 344668988775 456677777775 5555554322 221 1 1347788888886
Q ss_pred -------chhhhhccCC--CC---CHHHHHHHHHHhhhhhhhcCCCCccCcchhhhH
Q 039198 89 -------KWSAIATRLP--GR---TDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTDL 133 (351)
Q Consensus 89 -------kW~~IA~~lp--gR---T~~qcr~RW~~~Lr~~ik~~~~t~eEd~~l~~l 133 (351)
.|..||..|. .- ....+|..|..+|-+.=. ++++|...+.+-
T Consensus 58 ~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE~---~~~~e~~~l~~~ 111 (121)
T 2rq5_A 58 QQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDS---LSPEEHRRLEKE 111 (121)
T ss_dssp HHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHHH---CCHHHHHHHHHH
T ss_pred HHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHHC---cCHHHHhhHHHH
Confidence 5999999884 22 246789999998888632 566666655443
No 104
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=44.63 E-value=24 Score=28.90 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=30.1
Q ss_pred HHHHHHHHhCC--------chhhhhccCCC-CC---HHHHHHHHHHhhhhh
Q 039198 78 LIVNLHAVLGN--------KWSAIATRLPG-RT---DNEIKNFWNTHLKKK 116 (351)
Q Consensus 78 ~Ll~lv~~~G~--------kW~~IA~~lpg-RT---~~qcr~RW~~~Lr~~ 116 (351)
+|..+|.+.|| .|..||..|.- .+ +..+|..|..+|.+.
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~y 105 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAF 105 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 47788888885 59999999952 22 468899999988874
No 105
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=42.94 E-value=26 Score=28.65 Aligned_cols=39 Identities=26% Similarity=0.387 Sum_probs=29.5
Q ss_pred HHHHHHHHhCC--------chhhhhccCCCC----CHHHHHHHHHHhhhhh
Q 039198 78 LIVNLHAVLGN--------KWSAIATRLPGR----TDNEIKNFWNTHLKKK 116 (351)
Q Consensus 78 ~Ll~lv~~~G~--------kW~~IA~~lpgR----T~~qcr~RW~~~Lr~~ 116 (351)
+|..+|.+.|| .|..|+..|+-. .+..+|..|..+|.+.
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 47788888885 599999999522 1467888898888774
No 106
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=42.93 E-value=26 Score=28.75 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=31.0
Q ss_pred HHHHHHHHHhCC--------chhhhhccCC--CC---CHHHHHHHHHHhhhhh
Q 039198 77 QLIVNLHAVLGN--------KWSAIATRLP--GR---TDNEIKNFWNTHLKKK 116 (351)
Q Consensus 77 ~~Ll~lv~~~G~--------kW~~IA~~lp--gR---T~~qcr~RW~~~Lr~~ 116 (351)
-+|..+|...|| .|..||..|+ .. ....+|..|..+|.+.
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~y 107 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPY 107 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 357788888885 5999999984 22 2578899999999884
No 107
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=42.00 E-value=15 Score=30.24 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=30.8
Q ss_pred HHHHHHHHhCC--------chhhhhccCCCCCHHHHHHHHHHhhhhh
Q 039198 78 LIVNLHAVLGN--------KWSAIATRLPGRTDNEIKNFWNTHLKKK 116 (351)
Q Consensus 78 ~Ll~lv~~~G~--------kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ 116 (351)
+|..+|.+.|| .|..||..|.--.+..+|..|..+|-+.
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 98 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 98 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHH
Confidence 36677777774 4999999986444899999999999885
No 108
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=40.76 E-value=21 Score=31.25 Aligned_cols=24 Identities=33% Similarity=0.675 Sum_probs=20.2
Q ss_pred CCCCCCCCCHHHHHHHH--------HHHHHhC
Q 039198 11 NNIKKGPWTPEEDQKLI--------DYIRKHG 34 (351)
Q Consensus 11 ~~lkKg~WT~EED~~L~--------~~V~k~g 34 (351)
|.-..|-||+|+|+.|. .+++|||
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG 141 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG 141 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC
Confidence 56678999999999887 5778887
No 109
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=39.86 E-value=36 Score=28.69 Aligned_cols=39 Identities=15% Similarity=0.214 Sum_probs=30.5
Q ss_pred HHHHHHHHhCC--------chhhhhccCC--CC---CHHHHHHHHHHhhhhh
Q 039198 78 LIVNLHAVLGN--------KWSAIATRLP--GR---TDNEIKNFWNTHLKKK 116 (351)
Q Consensus 78 ~Ll~lv~~~G~--------kW~~IA~~lp--gR---T~~qcr~RW~~~Lr~~ 116 (351)
+|..+|.+.|| .|..||..|+ .. .+..+|..|..+|.+.
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~y 119 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPY 119 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 47788888885 4999999984 22 2578899999999884
No 110
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=37.28 E-value=5.3 Score=32.53 Aligned_cols=39 Identities=15% Similarity=0.251 Sum_probs=28.9
Q ss_pred HHHHHHHHhCC-------CCcccccccccccccccccccccccccCC
Q 039198 25 KLIDYIRKHGH-------GSWRALPKLAGLNRCGKSCRLRWTNYLRP 64 (351)
Q Consensus 25 ~L~~~V~k~g~-------~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p 64 (351)
+|..+|.+.|. ..|..||..+|... +..++..|.++|-|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 56677777763 37999999998554 67788888877654
No 111
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=34.55 E-value=35 Score=23.63 Aligned_cols=43 Identities=14% Similarity=0.168 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhh
Q 039198 71 FSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKK 115 (351)
Q Consensus 71 WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~Lr~ 115 (351)
.+ +.+..++.++...|-.+..||..+ |-+...|+.+....+++
T Consensus 16 L~-~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 16 LT-TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp SC-HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 44 444555556667788899999999 78888888877655443
No 112
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=33.66 E-value=20 Score=27.84 Aligned_cols=39 Identities=26% Similarity=0.380 Sum_probs=27.9
Q ss_pred HHHHHHHHhCC--------chhhhhccCCC-C---CHHHHHHHHHHhhhhh
Q 039198 78 LIVNLHAVLGN--------KWSAIATRLPG-R---TDNEIKNFWNTHLKKK 116 (351)
Q Consensus 78 ~Ll~lv~~~G~--------kW~~IA~~lpg-R---T~~qcr~RW~~~Lr~~ 116 (351)
+|..+|.+.|+ .|..||..|.- . .+..+|..|..+|.+.
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~y 90 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYPY 90 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHHH
Confidence 47777887774 59999998842 1 2567788888777653
No 113
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=31.80 E-value=7.6 Score=31.68 Aligned_cols=40 Identities=15% Similarity=0.302 Sum_probs=27.7
Q ss_pred HHHHHHHHhCC-------CCccccccccccccc---ccccccccccccCC
Q 039198 25 KLIDYIRKHGH-------GSWRALPKLAGLNRC---GKSCRLRWTNYLRP 64 (351)
Q Consensus 25 ~L~~~V~k~g~-------~nW~~IA~~lgp~Rs---~kqCr~Rw~n~L~p 64 (351)
+|..+|.+.|. ..|.+|+..+|...+ +...+..|.++|-|
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 57777877763 379999999985443 34567777776653
No 114
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=31.20 E-value=43 Score=23.92 Aligned_cols=43 Identities=21% Similarity=0.367 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHHH----hCCchhhhhccCCCCCHHHHHHHHHHhhhh
Q 039198 71 FSEEEEQLIVNLHAV----LGNKWSAIATRLPGRTDNEIKNFWNTHLKK 115 (351)
Q Consensus 71 WT~EED~~Ll~lv~~----~G~kW~~IA~~lpgRT~~qcr~RW~~~Lr~ 115 (351)
-++.| ..++.+..- .|-.+..||..+ |-+...|+.+....+++
T Consensus 11 L~~~e-r~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~k 57 (73)
T 1ku3_A 11 LSERE-AMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRK 57 (73)
T ss_dssp SCHHH-HHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 34444 444445443 467799999999 88999998877665544
No 115
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=30.10 E-value=90 Score=25.46 Aligned_cols=68 Identities=10% Similarity=0.067 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc------cCCCCC----CCCCCHHHHHHHHHHHH
Q 039198 15 KGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNY------LRPDIK----RGKFSEEEEQLIVNLHA 84 (351)
Q Consensus 15 Kg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~------L~p~lk----rg~WT~EED~~Ll~lv~ 84 (351)
..+.|.|+-..++.++. .|. ...+||+.+| .+...+ .||... +.+..+ +...++++.+.|++++.
T Consensus 23 ~~~~s~e~r~~ii~l~~-~G~-s~~~IA~~lg--is~~TV-~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 97 (159)
T 2k27_A 23 GRPLPEVVRQRIVDLAH-QGV-RPCDISRQLR--VSHGCV-SKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKR 97 (159)
T ss_dssp SCSSCHHHHHHHHHHHH-HTC-CHHHHHHHHT--CCSHHH-HHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHH-HHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 34788999888888884 454 7889999887 443333 333332 222222 23478888888888886
Q ss_pred HhC
Q 039198 85 VLG 87 (351)
Q Consensus 85 ~~G 87 (351)
+..
T Consensus 98 ~~~ 100 (159)
T 2k27_A 98 QNP 100 (159)
T ss_dssp HCS
T ss_pred HCc
Confidence 643
No 116
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=28.72 E-value=8.5 Score=31.81 Aligned_cols=40 Identities=23% Similarity=0.407 Sum_probs=28.0
Q ss_pred HHHHHHHHhCC-------CCccccccccccccc----ccccccccccccCC
Q 039198 25 KLIDYIRKHGH-------GSWRALPKLAGLNRC----GKSCRLRWTNYLRP 64 (351)
Q Consensus 25 ~L~~~V~k~g~-------~nW~~IA~~lgp~Rs----~kqCr~Rw~n~L~p 64 (351)
+|..+|.+.|. ..|.+|+..+|...+ +..++..|.++|-|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 56677777763 379999999985443 34567777777754
No 117
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=27.73 E-value=1.8e+02 Score=22.47 Aligned_cols=85 Identities=14% Similarity=0.082 Sum_probs=49.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccC------CCCCCCCCCHHHHHHHHHHHHHhC-C
Q 039198 16 GPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLR------PDIKRGKFSEEEEQLIVNLHAVLG-N 88 (351)
Q Consensus 16 g~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~------p~lkrg~WT~EED~~Ll~lv~~~G-~ 88 (351)
...|.++-..++.++. .|. .-.+||+.+| .+...++ ||..... ...+....+++++..|+.+ ...+ -
T Consensus 5 ~~~s~~~r~~i~~~~~-~G~-s~~~ia~~lg--is~~Tv~-r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~-~~~~~~ 78 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LNV-SLHEMSRKIS--RSRHCIR-VYLKDPVSYGTSKRAPRRKALSVRDERNVIRA-ASNSCK 78 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TTC-CHHHHHHHHT--CCHHHHH-HHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHH-HHHCCC
T ss_pred ccCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHHH-HHHHcccccCCcCCCCCCCcCCHHHHHHHHHH-HhCCCC
Confidence 4678888888887774 454 7789999887 4444432 3332211 1122335889998888887 3333 2
Q ss_pred chhhhhccCCC-CCHHHHH
Q 039198 89 KWSAIATRLPG-RTDNEIK 106 (351)
Q Consensus 89 kW~~IA~~lpg-RT~~qcr 106 (351)
.-..|+..++- -+...+.
T Consensus 79 s~~~i~~~lg~~~s~~tV~ 97 (141)
T 1u78_A 79 TARDIRNELQLSASKRTIL 97 (141)
T ss_dssp CHHHHHHHTTCCSCHHHHH
T ss_pred CHHHHHHHHCCCccHHHHH
Confidence 34567766631 3444443
No 118
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=27.51 E-value=26 Score=27.84 Aligned_cols=39 Identities=15% Similarity=0.304 Sum_probs=28.9
Q ss_pred HHHHHHHHhCC--------chhhhhccCCC-C----CHHHHHHHHHHhhhhh
Q 039198 78 LIVNLHAVLGN--------KWSAIATRLPG-R----TDNEIKNFWNTHLKKK 116 (351)
Q Consensus 78 ~Ll~lv~~~G~--------kW~~IA~~lpg-R----T~~qcr~RW~~~Lr~~ 116 (351)
+|..+|.+.|| .|..||..|+- . .+.++|..|..+|.+.
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~y 88 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPY 88 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 47777888874 59999998842 1 2467888898888774
No 119
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=27.10 E-value=1e+02 Score=24.77 Aligned_cols=68 Identities=7% Similarity=0.056 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc------cCCCCC----CCCCCHHHHHHHHHHHH
Q 039198 15 KGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNY------LRPDIK----RGKFSEEEEQLIVNLHA 84 (351)
Q Consensus 15 Kg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~------L~p~lk----rg~WT~EED~~Ll~lv~ 84 (351)
....|.|+-..++.++. .|. ...+||+.+| .+...+ .||... +.+..+ ....++++.+.|++++.
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G~-s~~~iA~~lg--is~~TV-~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 104 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QGV-RPCDISRQLR--VSHGCV-SKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKR 104 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TTC-CHHHHHHHHT--CCHHHH-HHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHH-HHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 45789999888888884 454 7789999887 443333 333321 222222 23478888888888886
Q ss_pred HhC
Q 039198 85 VLG 87 (351)
Q Consensus 85 ~~G 87 (351)
+.+
T Consensus 105 ~~~ 107 (149)
T 1k78_A 105 QNP 107 (149)
T ss_dssp HCT
T ss_pred hCc
Confidence 643
No 120
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=25.91 E-value=52 Score=27.43 Aligned_cols=45 Identities=7% Similarity=0.044 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhhhhhhc
Q 039198 74 EEEQLIVNLHAVLG-NKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQ 119 (351)
Q Consensus 74 EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~ 119 (351)
+-|.+|+.+.++.| -.+..||+.+ |=+...|+.|+..+....+.+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 56888999988887 5699999999 999999999999887776654
No 121
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=25.03 E-value=50 Score=23.17 Aligned_cols=40 Identities=13% Similarity=0.207 Sum_probs=28.4
Q ss_pred HHHHHHHHHH----HhCCchhhhhccCCCCCHHHHHHHHHHhhhh
Q 039198 75 EEQLIVNLHA----VLGNKWSAIATRLPGRTDNEIKNFWNTHLKK 115 (351)
Q Consensus 75 ED~~Ll~lv~----~~G~kW~~IA~~lpgRT~~qcr~RW~~~Lr~ 115 (351)
.+..++.+.. ..|-.+..||..+ |-+...|+.+....+++
T Consensus 9 ~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 9 REAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRK 52 (68)
T ss_dssp HHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3444444443 2467799999999 88999999887766554
No 122
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=24.06 E-value=11 Score=31.59 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCC
Q 039198 21 EEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDI 66 (351)
Q Consensus 21 EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~l 66 (351)
+-|.+|+.++++.+.-.|.+||+.+| -+...|+.|..+....++
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg--~s~~tv~~rl~~L~~~g~ 46 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVG--LSTTPCWRRIQKMEEDGV 46 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHT--CCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCC
Confidence 56889999999988889999999997 888889888877655443
Done!