BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>039199
MSITASQQSFLTNALVTTHRPRTKIVTCVKVISCTNRHDDQKYSSRKNDNQLAKLAVVTL
AAGVLTMGSVGDAVAAKSGGRVGGQAFRPSAPRSAPRSYGNSRTNIYINPPVAPPLVGGY
GYGSYYGGWGWSPFSFFVPGPSVAIGLGGGFDLLALFLFLGAAAAVVRKFFGSREDEEDY

High Scoring Gene Products

Symbol, full name Information P value
AT5G57345 protein from Arabidopsis thaliana 2.1e-38

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  039199
        (180 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:505006695 - symbol:AT5G57345 "AT5G57345" speci...   411  2.1e-38   1


>TAIR|locus:505006695 [details] [associations]
            symbol:AT5G57345 "AT5G57345" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0030003 "cellular cation
            homeostasis" evidence=RCA] [GO:0070838 "divalent metal ion
            transport" evidence=RCA] EMBL:CP002688 InterPro:IPR010903
            Pfam:PF07466 EMBL:AY087890 EMBL:BT025543 IPI:IPI00520042
            RefSeq:NP_568854.1 UniGene:At.43745 STRING:Q8LAD4 PRIDE:Q8LAD4
            EnsemblPlants:AT5G57345.1 GeneID:835840 KEGG:ath:AT5G57345
            TAIR:At5g57345 HOGENOM:HOG000242047 InParanoid:Q8LAD4 OMA:FSFFAPG
            PhylomeDB:Q8LAD4 ProtClustDB:CLSN2690035 Genevestigator:Q8LAD4
            Uniprot:Q8LAD4
        Length = 188

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 90/182 (49%), Positives = 111/182 (60%)

Query:     2 SITASQQSFLTNALVTTH--RPRTKI-VTCVKVISC-TNRHDDQKYSSRKNDNQLAKLAV 57
             +I +S+QSFL+N     H  +P++ + +T    I C ++ HDD+  SSRKN+NQLAKLA+
Sbjct:     5 AIASSRQSFLSNNFSFQHSFKPKSNVNLTRPNSICCKSSHHDDETDSSRKNENQLAKLAI 64

Query:    58 VTLAAGVLTMGSVGDAVAAKSGGRVGGQAFRPSAPRSAPRSYGNSRTNIYINPPVAPPLV 117
              TLA GVL +GSVGDA AAKSGGR+GGQAFR SAPR  PR    SRTNIY+NP VAPPL+
Sbjct:    65 ATLAVGVLALGSVGDAFAAKSGGRIGGQAFRSSAPRPPPRINNRSRTNIYVNPQVAPPLI 124

Query:   118 XXXXXXXXXXXXXXXPFSFFVPGPSVAIXXXXXXXXXXXXXXXXXXXXVVRKFFGSREDE 177
                            PFSFF PGP+VA+                    V R FF SR DE
Sbjct:   125 GGYGYGYGGYGWS--PFSFFAPGPAVAVGVGGGFDLLLLFMFFGAASAVARNFFRSRNDE 182

Query:   178 ED 179
             +D
Sbjct:   183 DD 184


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.131   0.380    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      180       145   0.00071  103 3  11 22  0.46    31
                                                     30  0.49    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  533 (57 KB)
  Total size of DFA:  118 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.66u 0.19s 14.85t   Elapsed:  00:00:00
  Total cpu time:  14.66u 0.19s 14.85t   Elapsed:  00:00:00
  Start:  Fri May 10 13:40:34 2013   End:  Fri May 10 13:40:34 2013

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