Query 039199
Match_columns 180
No_of_seqs 83 out of 85
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 12:03:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039199.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039199hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kv5_A FST, putative uncharact 59.9 14 0.00048 23.1 4.0 27 150-176 4-30 (33)
2 1pfi_A Major coat protein of P 30.0 45 0.0015 22.1 3.0 22 148-169 24-45 (46)
3 1tzs_X 23-MER peptide from PEL 21.3 43 0.0015 20.0 1.5 22 54-76 2-23 (26)
4 3cio_A ETK, tyrosine-protein k 16.9 42 0.0014 27.3 1.0 7 119-125 283-289 (299)
5 2jwa_A Receptor tyrosine-prote 14.8 1.6E+02 0.0055 19.0 3.2 20 150-169 18-37 (44)
6 3lay_A Zinc resistance-associa 10.0 60 0.0021 25.9 0.0 23 53-76 29-51 (175)
7 2wsc_F Photosystem I reaction 8.3 72 0.0025 27.2 -0.2 23 153-175 164-186 (231)
8 1q90_R Cytochrome B6-F complex 6.5 5.8E+02 0.02 16.5 3.8 12 39-50 4-15 (49)
9 2ks1_B Epidermal growth factor 6.5 3.9E+02 0.013 17.0 2.7 11 159-169 27-37 (44)
10 2l16_A SEC-independent protein 6.2 2.4E+02 0.0081 19.8 1.6 22 57-78 11-32 (78)
No 1
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=59.85 E-value=14 Score=23.13 Aligned_cols=27 Identities=15% Similarity=0.384 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 039199 150 GFDLLALFLFLGAAAAVVRKFFGSRED 176 (180)
Q Consensus 150 ~f~llil~~v~g~vv~~vR~~~~~r~d 176 (180)
+|..+|-=+++|.++..+.+.+++|+|
T Consensus 4 i~~~IIaPivVGvvl~L~d~WLn~r~~ 30 (33)
T 2kv5_A 4 LMSLVIAPIFVGLVLEMISRVLDEEDD 30 (33)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 466777778899999999999999985
No 2
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=30.03 E-value=45 Score=22.11 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=18.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 039199 148 GGGFDLLALFLFLGAAAAVVRK 169 (180)
Q Consensus 148 GG~f~llil~~v~g~vv~~vR~ 169 (180)
|-+.+.|++++|+|.+++..|.
T Consensus 24 ~~IVGaLvil~VAGLiysm~RK 45 (46)
T 1pfi_A 24 GYIVGALVILAVAGLIYSMLRK 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3467889999999999998885
No 3
>1tzs_X 23-MER peptide from PELB-IGG kappa light chain fusion protein; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=21.25 E-value=43 Score=19.96 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhhhCCCchhHHh
Q 039199 54 KLAVVTLAAGVLTMGSVGDAVAA 76 (180)
Q Consensus 54 kl~~~~ll~g~L~l~~~~~A~AA 76 (180)
|-++.-+++|+|+. ..++++||
T Consensus 2 K~li~piAaGLLLa-~sqp~lAa 23 (26)
T 1tzs_X 2 KYLLPTAAAGLLLL-AAQPAMAM 23 (26)
T ss_pred cchhhhHHHHHHHH-hcChHhhh
Confidence 34556677777766 36667777
No 4
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=16.93 E-value=42 Score=27.33 Aligned_cols=7 Identities=43% Similarity=0.942 Sum_probs=3.1
Q ss_pred CCCCCCC
Q 039199 119 GYGYGSY 125 (180)
Q Consensus 119 Gygyg~g 125 (180)
+|+|+||
T Consensus 283 ~y~y~y~ 289 (299)
T 3cio_A 283 AYSYGYN 289 (299)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 4454433
No 5
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=14.75 E-value=1.6e+02 Score=19.04 Aligned_cols=20 Identities=5% Similarity=0.140 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 039199 150 GFDLLALFLFLGAAAAVVRK 169 (180)
Q Consensus 150 ~f~llil~~v~g~vv~~vR~ 169 (180)
..+++++++++..++-.+||
T Consensus 18 vVGvll~vi~~l~~~~~~RR 37 (44)
T 2jwa_A 18 VVGILLVVVLGVVFGILIKR 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhheeh
Confidence 34444444444444444554
No 6
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=10.04 E-value=60 Score=25.87 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhCCCchhHHh
Q 039199 53 AKLAVVTLAAGVLTMGSVGDAVAA 76 (180)
Q Consensus 53 ~kl~~~~ll~g~L~l~~~~~A~AA 76 (180)
+|++++++++.+|++. ...|+|.
T Consensus 29 kk~~la~~al~~l~l~-s~~A~A~ 51 (175)
T 3lay_A 29 NKSAIALIALSLLALS-SGAAFAG 51 (175)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHH-hHHHHhc
Confidence 3444555545545554 3336665
No 7
>2wsc_F Photosystem I reaction center subunit III, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Spinacia oleracea} PDB: 2wse_F* 2wsf_F*
Probab=8.25 E-value=72 Score=27.23 Aligned_cols=23 Identities=13% Similarity=0.099 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC
Q 039199 153 LLALFLFLGAAAAVVRKFFGSRE 175 (180)
Q Consensus 153 llil~~v~g~vv~~vR~~~~~r~ 175 (180)
-++|+-|+|.+--+=|.++....
T Consensus 164 gllFLYIAGwIGW~GR~YL~av~ 186 (231)
T 2wsc_F 164 GILFLYIAGWIGWVGRSYLIAIR 186 (231)
T ss_dssp HHHHHHHTTTTTTTTTTTTTTCS
T ss_pred hhhHHHHhcccccccHHHHHHhc
Confidence 34555576666555566665433
No 8
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=6.49 E-value=5.8e+02 Score=16.49 Aligned_cols=12 Identities=8% Similarity=0.030 Sum_probs=5.8
Q ss_pred CCCCcchhhhHH
Q 039199 39 DDQKYSSRKNDN 50 (180)
Q Consensus 39 ~~~~~~~~k~~~ 50 (180)
+|.++..+++..
T Consensus 4 ~~~pdm~RRqfl 15 (49)
T 1q90_R 4 SEVPDMNKRNIM 15 (49)
T ss_dssp CCCCCHHHHHHH
T ss_pred ccCCChHHHHHH
Confidence 455555555443
No 9
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=6.47 E-value=3.9e+02 Score=17.01 Aligned_cols=11 Identities=9% Similarity=0.081 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 039199 159 FLGAAAAVVRK 169 (180)
Q Consensus 159 v~g~vv~~vR~ 169 (180)
++..++-.+|+
T Consensus 27 i~~~~~~~~RR 37 (44)
T 2ks1_B 27 VALGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhhh
Confidence 33333444443
No 10
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=6.17 E-value=2.4e+02 Score=19.79 Aligned_cols=22 Identities=5% Similarity=0.222 Sum_probs=12.3
Q ss_pred HHHHHHHHhhhCCCchhHHhhh
Q 039199 57 VVTLAAGVLTMGSVGDAVAAKS 78 (180)
Q Consensus 57 ~~~ll~g~L~l~~~~~A~AArS 78 (180)
++.+++.+|++++-.=...||+
T Consensus 11 liIlvVaLlvfGpkkLP~l~r~ 32 (78)
T 2l16_A 11 ILIFVIALIIFGPSKLPEIGRA 32 (78)
T ss_dssp HHHHHHHHHHSCTTTHHHHHHH
T ss_pred HHHHHHHhheeCccHhHHHHHH
Confidence 4445555777774444445554
Done!