Query 039199
Match_columns 180
No_of_seqs 83 out of 85
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 12:03:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039199.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039199hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3dtub2 f.17.2.1 (B:30-129) Ba 7.5 2.8E+02 0.021 17.6 4.4 25 152-176 36-60 (100)
2 d2p02a3 d.130.1.1 (A:274-417) 6.4 77 0.0056 23.1 1.0 11 80-90 24-34 (144)
3 d2pila_ d.24.1.1 (A:) Pilin Gc 5.4 1.9E+02 0.014 17.8 2.4 10 56-65 7-16 (158)
4 d1mxaa3 d.130.1.1 (A:232-383) 5.2 1E+02 0.0073 22.6 1.0 10 80-89 24-33 (152)
5 d1fp5a1 b.1.1.2 (A:336-438) Im 4.8 1.1E+02 0.0077 19.3 0.8 19 30-48 79-97 (103)
6 d1u19a_ f.13.1.2 (A:) Rhodopsi 3.9 4.8E+02 0.035 17.8 4.0 25 42-66 240-264 (348)
7 d1sbqa_ c.124.1.6 (A:) 5,10-me 3.6 1.2E+02 0.0089 20.7 0.4 9 31-39 45-53 (164)
8 d1fftb2 f.17.2.1 (B:27-117) Cy 3.6 68 0.005 20.8 -1.0 18 158-175 31-48 (91)
9 d1ow0a1 b.1.1.2 (A:242-342) Im 3.5 1.9E+02 0.014 17.9 1.3 18 30-47 78-95 (101)
10 d2noha2 d.129.1.2 (A:12-135) 8 3.3 1.6E+02 0.012 19.6 0.8 7 83-89 30-36 (124)
No 1
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=7.50 E-value=2.8e+02 Score=17.58 Aligned_cols=25 Identities=12% Similarity=0.011 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCc
Q 039199 152 DLLALFLFLGAAAAVVRKFFGSRED 176 (180)
Q Consensus 152 ~llil~~v~g~vv~~vR~~~~~r~d 176 (180)
.++++++|.+.++.++-++-.++++
T Consensus 36 ~~~I~~~V~~~l~~~~~~~r~~~~~ 60 (100)
T d3dtub2 36 IAAITIFVTLLILYAVWRFHEKRNK 60 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHBTTTCC
T ss_pred HHHHHHHHHHHHHHHhhhhhccCCC
Confidence 3445555666667777677666554
No 2
>d2p02a3 d.130.1.1 (A:274-417) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]}
Probab=6.38 E-value=77 Score=23.06 Aligned_cols=11 Identities=45% Similarity=0.724 Sum_probs=9.0
Q ss_pred CccCCCCCCCC
Q 039199 80 GRVGGQAFRPS 90 (180)
Q Consensus 80 GRIGGgSFRs~ 90 (180)
+++|||+|+--
T Consensus 24 ~~hGGGafsgK 34 (144)
T d2p02a3 24 GAHGGGAFSGK 34 (144)
T ss_dssp SCCCSCCCTTB
T ss_pred cccCCcCCCCC
Confidence 57999999853
No 3
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=5.36 E-value=1.9e+02 Score=17.79 Aligned_cols=10 Identities=30% Similarity=0.567 Sum_probs=4.1
Q ss_pred HHHHHHHHHh
Q 039199 56 AVVTLAAGVL 65 (180)
Q Consensus 56 ~~~~ll~g~L 65 (180)
+++.+++|+|
T Consensus 7 lVViaIIgIL 16 (158)
T d2pila_ 7 MIVIAIVGIL 16 (158)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 4
>d1mxaa3 d.130.1.1 (A:232-383) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]}
Probab=5.18 E-value=1e+02 Score=22.55 Aligned_cols=10 Identities=50% Similarity=0.767 Sum_probs=8.7
Q ss_pred CccCCCCCCC
Q 039199 80 GRVGGQAFRP 89 (180)
Q Consensus 80 GRIGGgSFRs 89 (180)
+++|||+|+-
T Consensus 24 ~~~GGGafsG 33 (152)
T d1mxaa3 24 ARHGGGAFSG 33 (152)
T ss_dssp SCCCSCCCTT
T ss_pred cccCCCCCCC
Confidence 6799999985
No 5
>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.78 E-value=1.1e+02 Score=19.26 Aligned_cols=19 Identities=11% Similarity=0.216 Sum_probs=13.0
Q ss_pred ceEEEeccCCCCCcchhhh
Q 039199 30 KVISCTNRHDDQKYSSRKN 48 (180)
Q Consensus 30 ~~~~~~~~~~~~~~~~~k~ 48 (180)
+.++|...|.+.+.+..|+
T Consensus 79 ~~~tC~V~H~~l~~p~~k~ 97 (103)
T d1fp5a1 79 ETYQCRVTHPHLPRALMRS 97 (103)
T ss_dssp CCEEEEEECSSCSSCEEEE
T ss_pred CeEEEEEEECCCCCCEEEE
Confidence 4689999976666665543
No 6
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.94 E-value=4.8e+02 Score=17.79 Aligned_cols=25 Identities=8% Similarity=0.353 Sum_probs=15.1
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHhh
Q 039199 42 KYSSRKNDNQLAKLAVVTLAAGVLT 66 (180)
Q Consensus 42 ~~~~~k~~~~l~kl~~~~ll~g~L~ 66 (180)
....+|.++++.|.+++.+++-++.
T Consensus 240 ~~~~~~~~~~~~~~~~~i~~~f~~~ 264 (348)
T d1u19a_ 240 SATTQKAEKEVTRMVIIMVIAFLIC 264 (348)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHhhHhheEEEeehHHHHH
Confidence 3445566677777776666655543
No 7
>d1sbqa_ c.124.1.6 (A:) 5,10-methenyltetrahydrofolate synthetase homolog MPN348 {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=3.62 E-value=1.2e+02 Score=20.74 Aligned_cols=9 Identities=11% Similarity=0.003 Sum_probs=4.5
Q ss_pred eEEEeccCC
Q 039199 31 VISCTNRHD 39 (180)
Q Consensus 31 ~~~~~~~~~ 39 (180)
+|.|-.+-.
T Consensus 45 ~I~~Y~p~~ 53 (164)
T d1sbqa_ 45 TIALYEPIK 53 (164)
T ss_dssp EEECCCCCT
T ss_pred EEEEEeccC
Confidence 455555443
No 8
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=3.61 E-value=68 Score=20.77 Aligned_cols=18 Identities=17% Similarity=0.076 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 039199 158 LFLGAAAAVVRKFFGSRE 175 (180)
Q Consensus 158 ~v~g~vv~~vR~~~~~r~ 175 (180)
.+.+.++..+-+|=.+++
T Consensus 31 ~V~~~~~~~~~ryR~~~~ 48 (91)
T d1fftb2 31 PAILMAVGFAWKYRASNK 48 (91)
T ss_dssp HHHHHHHTTTTTTTTSTT
T ss_pred HHHHHHHhhheeeeccCC
Confidence 344444555545544443
No 9
>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.55 E-value=1.9e+02 Score=17.94 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=12.4
Q ss_pred ceEEEeccCCCCCcchhh
Q 039199 30 KVISCTNRHDDQKYSSRK 47 (180)
Q Consensus 30 ~~~~~~~~~~~~~~~~~k 47 (180)
+...|.+.|.+.+.+..|
T Consensus 78 ~~ftC~V~H~~~~~p~~~ 95 (101)
T d1ow0a1 78 KTFTCTAAYPESKTPLTA 95 (101)
T ss_dssp CEEEEEECCSSCSSCEEE
T ss_pred CeEEEEEEeCCCCCCcEE
Confidence 578999997665555544
No 10
>d2noha2 d.129.1.2 (A:12-135) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.31 E-value=1.6e+02 Score=19.61 Aligned_cols=7 Identities=57% Similarity=0.833 Sum_probs=5.7
Q ss_pred CCCCCCC
Q 039199 83 GGQAFRP 89 (180)
Q Consensus 83 GGgSFRs 89 (180)
+|++||=
T Consensus 30 ~GQsFrW 36 (124)
T d2noha2 30 SGQSFRW 36 (124)
T ss_dssp SSSCSCC
T ss_pred CCceeee
Confidence 6899994
Done!