Query 039200
Match_columns 88
No_of_seqs 128 out of 1010
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 07:17:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039200.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039200hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1196 Predicted NAD-dependen 99.9 6.1E-25 1.3E-29 162.0 7.0 81 7-88 1-81 (343)
2 COG2130 Putative NADP-dependen 99.9 2.2E-24 4.8E-29 159.2 6.1 74 9-88 8-81 (340)
3 PLN03154 putative allyl alcoho 99.6 4.8E-15 1E-19 109.3 7.8 80 4-85 3-83 (348)
4 cd08295 double_bond_reductase_ 98.9 1.1E-08 2.3E-13 74.5 7.8 77 8-85 1-78 (338)
5 cd08293 PTGR2 Prostaglandin re 98.6 1.8E-07 3.9E-12 67.8 7.3 55 8-65 1-57 (345)
6 TIGR02825 B4_12hDH leukotriene 98.6 8.9E-08 1.9E-12 69.2 5.6 51 10-64 1-51 (325)
7 cd05288 PGDH Prostaglandin deh 98.3 2E-06 4.4E-11 61.6 6.6 54 9-66 1-54 (329)
8 cd08294 leukotriene_B4_DH_like 97.8 5.2E-05 1.1E-09 54.3 5.4 49 10-62 3-51 (329)
9 TIGR01202 bchC 2-desacetyl-2-h 93.0 0.3 6.5E-06 35.3 5.3 29 26-58 11-39 (308)
10 cd08234 threonine_DH_like L-th 93.0 0.51 1.1E-05 33.8 6.5 35 27-65 11-45 (334)
11 cd08273 MDR8 Medium chain dehy 91.4 1.1 2.3E-05 31.9 6.6 43 10-60 1-43 (331)
12 PRK05396 tdh L-threonine 3-deh 91.3 0.57 1.2E-05 33.9 5.2 30 26-59 11-40 (341)
13 cd08291 ETR_like_1 2-enoyl thi 91.2 0.86 1.9E-05 32.8 5.9 49 11-64 2-50 (324)
14 cd08301 alcohol_DH_plants Plan 91.1 0.78 1.7E-05 33.8 5.8 41 9-59 2-42 (369)
15 cd08281 liver_ADH_like1 Zinc-d 90.1 1.6 3.4E-05 32.3 6.7 47 11-61 2-50 (371)
16 cd08277 liver_alcohol_DH_like 89.8 1.2 2.6E-05 32.8 5.8 41 9-59 2-42 (365)
17 cd08236 sugar_DH NAD(P)-depend 89.6 1.9 4.1E-05 31.0 6.6 43 11-64 2-44 (343)
18 TIGR02823 oxido_YhdH putative 89.5 0.99 2.2E-05 32.1 5.0 41 11-59 1-41 (323)
19 cd08230 glucose_DH Glucose deh 89.1 1.2 2.6E-05 32.6 5.3 35 28-66 13-47 (355)
20 COG0604 Qor NADPH:quinone redu 89.0 0.73 1.6E-05 34.3 4.2 31 25-59 12-42 (326)
21 cd08237 ribitol-5-phosphate_DH 89.0 0.82 1.8E-05 33.5 4.4 31 26-61 12-42 (341)
22 cd08233 butanediol_DH_like (2R 89.0 1.1 2.5E-05 32.5 5.1 38 11-59 2-39 (351)
23 cd08288 MDR_yhdh Yhdh putative 88.7 1.3 2.9E-05 31.4 5.2 41 11-59 2-42 (324)
24 TIGR02822 adh_fam_2 zinc-bindi 88.0 2.8 6.1E-05 30.6 6.7 37 21-61 8-44 (329)
25 cd08270 MDR4 Medium chain dehy 87.7 1.7 3.6E-05 30.5 5.2 40 11-59 2-41 (305)
26 cd05282 ETR_like 2-enoyl thioe 87.2 1.8 3.9E-05 30.6 5.1 40 21-64 7-46 (323)
27 cd08259 Zn_ADH5 Alcohol dehydr 85.5 2.6 5.7E-05 29.8 5.3 39 11-59 2-40 (332)
28 TIGR02817 adh_fam_1 zinc-bindi 85.1 2.1 4.5E-05 30.6 4.6 31 25-59 14-44 (336)
29 PLN02740 Alcohol dehydrogenase 84.2 4.1 9E-05 30.3 6.0 44 6-59 7-50 (381)
30 TIGR01751 crot-CoA-red crotony 84.2 2.5 5.4E-05 31.6 4.9 45 9-58 7-51 (398)
31 cd08290 ETR 2-enoyl thioester 84.0 2.2 4.8E-05 30.6 4.4 43 11-59 2-44 (341)
32 cd08276 MDR7 Medium chain dehy 83.9 7.1 0.00015 27.5 6.9 45 11-63 2-46 (336)
33 cd08300 alcohol_DH_class_III c 83.8 4.2 9.1E-05 30.0 5.9 29 27-59 14-42 (368)
34 cd08278 benzyl_alcohol_DH Benz 83.5 3.5 7.6E-05 30.4 5.3 41 9-59 2-42 (365)
35 cd08250 Mgc45594_like Mgc45594 83.4 7.4 0.00016 27.7 6.9 43 11-59 3-45 (329)
36 cd08239 THR_DH_like L-threonin 83.3 3.7 8.1E-05 29.6 5.3 30 26-59 10-39 (339)
37 cd08252 AL_MDR Arginate lyase 82.7 3.3 7.1E-05 29.5 4.8 45 11-60 2-46 (336)
38 TIGR03451 mycoS_dep_FDH mycoth 82.5 4.9 0.00011 29.4 5.8 40 11-60 3-42 (358)
39 cd08240 6_hydroxyhexanoate_dh_ 82.3 3.7 8.1E-05 29.7 5.0 28 28-59 13-40 (350)
40 cd08267 MDR1 Medium chain dehy 82.1 2.2 4.7E-05 29.9 3.6 33 28-64 14-46 (319)
41 cd08262 Zn_ADH8 Alcohol dehydr 82.0 3.7 8.1E-05 29.5 4.9 29 27-59 10-38 (341)
42 cd08232 idonate-5-DH L-idonate 81.6 2.9 6.3E-05 30.0 4.2 31 25-59 6-36 (339)
43 cd05278 FDH_like Formaldehyde 81.4 4.4 9.5E-05 29.1 5.1 31 27-60 11-41 (347)
44 PRK09880 L-idonate 5-dehydroge 81.2 4.8 0.0001 29.3 5.3 32 26-62 14-45 (343)
45 cd08235 iditol_2_DH_like L-idi 81.1 4.8 0.0001 28.9 5.2 38 11-59 2-39 (343)
46 cd08298 CAD2 Cinnamyl alcohol 81.0 5.7 0.00012 28.3 5.5 43 11-59 2-44 (329)
47 cd05280 MDR_yhdh_yhfp Yhdh and 80.7 5.5 0.00012 28.1 5.3 36 26-65 13-48 (325)
48 PRK10754 quinone oxidoreductas 80.4 4.1 8.9E-05 29.0 4.6 41 11-59 3-43 (327)
49 PLN02827 Alcohol dehydrogenase 80.2 6.4 0.00014 29.4 5.7 30 26-59 23-52 (378)
50 cd08297 CAD3 Cinnamyl alcohol 80.2 5.9 0.00013 28.4 5.4 31 25-59 11-41 (341)
51 cd08299 alcohol_DH_class_I_II_ 80.0 7.6 0.00016 28.8 6.0 45 5-59 3-47 (373)
52 PLN02514 cinnamyl-alcohol dehy 79.8 4.9 0.00011 29.6 5.0 41 11-61 11-51 (357)
53 PRK13771 putative alcohol dehy 79.7 5.6 0.00012 28.4 5.2 29 27-59 12-40 (334)
54 cd08242 MDR_like Medium chain 79.1 10 0.00022 26.9 6.3 38 11-59 2-39 (319)
55 cd08246 crotonyl_coA_red croto 78.3 5.2 0.00011 29.7 4.7 46 8-58 11-56 (393)
56 cd08238 sorbose_phosphate_red 78.3 5.1 0.00011 30.2 4.7 29 27-59 13-41 (410)
57 PRK10309 galactitol-1-phosphat 78.1 4.5 9.8E-05 29.4 4.3 30 27-59 11-40 (347)
58 cd08269 Zn_ADH9 Alcohol dehydr 77.5 4.4 9.6E-05 28.4 4.0 30 26-59 5-34 (312)
59 cd08258 Zn_ADH4 Alcohol dehydr 77.4 8.6 0.00019 27.5 5.5 32 26-61 12-43 (306)
60 cd08256 Zn_ADH2 Alcohol dehydr 77.1 4.8 0.0001 29.2 4.2 31 26-60 10-40 (350)
61 cd08287 FDH_like_ADH3 formalde 75.7 5.3 0.00012 28.7 4.1 31 27-60 11-41 (345)
62 cd08272 MDR6 Medium chain dehy 75.7 8 0.00017 26.9 4.9 42 11-60 2-43 (326)
63 cd08231 MDR_TM0436_like Hypoth 75.5 9.8 0.00021 27.7 5.5 31 26-60 11-41 (361)
64 cd05276 p53_inducible_oxidored 75.3 20 0.00043 24.7 6.8 41 11-59 2-42 (323)
65 cd08271 MDR5 Medium chain dehy 75.0 9.4 0.0002 26.7 5.1 35 26-64 13-47 (325)
66 cd08286 FDH_like_ADH2 formalde 74.8 9.4 0.0002 27.5 5.2 32 27-61 11-42 (345)
67 cd08263 Zn_ADH10 Alcohol dehyd 74.6 11 0.00025 27.5 5.6 39 11-59 2-40 (367)
68 PRK10083 putative oxidoreducta 73.7 11 0.00023 27.1 5.2 30 26-59 10-39 (339)
69 PTZ00354 alcohol dehydrogenase 73.4 12 0.00025 26.5 5.3 41 11-59 3-43 (334)
70 cd08289 MDR_yhfp_like Yhfp put 73.3 11 0.00024 26.7 5.2 41 11-59 2-42 (326)
71 PF08240 ADH_N: Alcohol dehydr 73.3 6.7 0.00014 24.0 3.6 23 44-66 1-23 (109)
72 cd08283 FDH_like_1 Glutathione 72.6 11 0.00024 28.1 5.2 31 26-59 10-40 (386)
73 TIGR03201 dearomat_had 6-hydro 72.4 6.3 0.00014 28.8 3.8 28 28-59 11-38 (349)
74 cd08248 RTN4I1 Human Reticulon 71.5 5.3 0.00011 28.7 3.2 34 27-63 15-48 (350)
75 cd05283 CAD1 Cinnamyl alcohol 71.5 7.5 0.00016 28.1 4.0 30 26-59 10-39 (337)
76 cd08249 enoyl_reductase_like e 71.2 5 0.00011 29.1 3.0 32 25-60 11-42 (339)
77 cd05281 TDH Threonine dehydrog 71.0 7.9 0.00017 27.9 4.0 29 27-59 12-40 (341)
78 cd05284 arabinose_DH_like D-ar 71.0 7.8 0.00017 27.7 4.0 29 27-59 12-40 (340)
79 cd08284 FDH_like_2 Glutathione 69.9 14 0.00031 26.4 5.2 30 27-59 11-40 (344)
80 cd08275 MDR3 Medium chain dehy 68.9 33 0.00072 24.0 6.8 30 26-59 12-41 (337)
81 cd08243 quinone_oxidoreductase 68.5 17 0.00036 25.3 5.2 30 26-59 13-42 (320)
82 cd08261 Zn_ADH7 Alcohol dehydr 68.2 16 0.00035 26.1 5.2 39 11-60 2-40 (337)
83 cd05285 sorbitol_DH Sorbitol d 68.1 11 0.00023 27.3 4.2 30 26-59 8-37 (343)
84 TIGR00692 tdh L-threonine 3-de 67.8 9.2 0.0002 27.6 3.8 28 28-59 11-38 (340)
85 cd08292 ETR_like_2 2-enoyl thi 67.6 24 0.00052 24.8 5.9 42 11-59 2-43 (324)
86 PRK09422 ethanol-active dehydr 67.6 11 0.00025 26.9 4.2 26 30-59 15-40 (338)
87 cd05289 MDR_like_2 alcohol deh 67.5 15 0.00032 25.3 4.7 35 26-64 13-47 (309)
88 COG1064 AdhP Zn-dependent alco 66.4 19 0.00041 27.5 5.4 25 28-56 16-40 (339)
89 PLN02702 L-idonate 5-dehydroge 65.4 22 0.00047 26.0 5.4 30 26-59 27-56 (364)
90 cd08244 MDR_enoyl_red Possible 65.0 20 0.00044 25.1 5.1 41 11-59 2-42 (324)
91 PLN02586 probable cinnamyl alc 65.0 19 0.00041 26.6 5.1 43 7-59 10-52 (360)
92 cd08282 PFDH_like Pseudomonas 63.1 15 0.00031 27.2 4.2 30 27-59 11-40 (375)
93 cd08285 NADP_ADH NADP(H)-depen 62.8 15 0.00034 26.5 4.2 29 27-59 11-39 (351)
94 cd05279 Zn_ADH1 Liver alcohol 62.8 25 0.00053 25.9 5.3 29 27-59 12-40 (365)
95 TIGR02819 fdhA_non_GSH formald 62.8 22 0.00048 26.8 5.2 39 26-65 12-54 (393)
96 cd08260 Zn_ADH6 Alcohol dehydr 62.3 25 0.00053 25.3 5.2 39 11-59 2-40 (345)
97 cd08247 AST1_like AST1 is a cy 61.7 14 0.00029 26.8 3.8 33 29-62 14-46 (352)
98 cd08264 Zn_ADH_like2 Alcohol d 60.3 17 0.00037 25.8 4.0 30 26-59 12-41 (325)
99 TIGR02818 adh_III_F_hyde S-(hy 59.1 17 0.00037 26.8 3.9 29 27-59 13-41 (368)
100 cd08265 Zn_ADH3 Alcohol dehydr 57.4 20 0.00043 26.6 4.0 29 27-59 38-66 (384)
101 cd08245 CAD Cinnamyl alcohol d 56.6 19 0.00042 25.6 3.8 29 27-59 11-39 (330)
102 cd08296 CAD_like Cinnamyl alco 56.3 21 0.00046 25.6 4.0 29 27-59 12-40 (333)
103 cd08253 zeta_crystallin Zeta-c 55.8 39 0.00084 23.3 5.1 30 26-59 13-42 (325)
104 cd08279 Zn_ADH_class_III Class 55.2 25 0.00053 25.8 4.2 28 28-59 13-40 (363)
105 cd08266 Zn_ADH_like1 Alcohol d 53.8 23 0.0005 24.8 3.7 30 26-59 13-42 (342)
106 PLN02178 cinnamyl-alcohol dehy 53.0 43 0.00093 25.0 5.3 29 27-59 18-46 (375)
107 cd08254 hydroxyacyl_CoA_DH 6-h 46.6 47 0.001 23.4 4.4 29 28-60 14-42 (338)
108 COG1062 AdhC Zn-dependent alco 46.3 37 0.00079 26.3 4.0 34 26-63 13-49 (366)
109 cd08268 MDR2 Medium chain dehy 41.7 1.2E+02 0.0025 21.0 6.7 30 26-59 13-42 (328)
110 cd08241 QOR1 Quinone oxidoredu 41.2 87 0.0019 21.5 5.0 30 26-59 13-42 (323)
111 KOG1198 Zinc-binding oxidoredu 40.3 62 0.0014 24.5 4.4 47 9-62 4-50 (347)
112 KOG3451 Uncharacterized conser 38.2 18 0.00039 21.6 1.0 15 52-66 8-22 (71)
113 cd05286 QOR2 Quinone oxidoredu 34.4 67 0.0014 22.0 3.6 30 26-59 12-41 (320)
114 PF04648 MF_alpha: Yeast matin 32.9 18 0.00039 14.8 0.3 6 53-58 3-8 (13)
115 PF10736 DUF2527: Protein of u 31.5 22 0.00048 18.5 0.6 15 52-66 18-32 (38)
116 TIGR02824 quinone_pig3 putativ 30.6 1E+02 0.0022 21.2 4.0 30 26-59 13-42 (325)
117 COG3085 Uncharacterized protei 29.6 15 0.00034 23.5 -0.3 28 8-35 7-34 (112)
118 PF06331 Tbf5: Transcription f 29.6 37 0.00081 20.0 1.4 16 49-64 5-20 (68)
119 KOG0022 Alcohol dehydrogenase, 28.2 1.1E+02 0.0024 23.7 4.0 29 27-59 19-47 (375)
120 KOG1197 Predicted quinone oxid 28.0 55 0.0012 24.8 2.3 48 9-64 8-58 (336)
121 PF03345 DDOST_48kD: Oligosacc 27.8 34 0.00073 26.9 1.3 33 45-79 305-341 (423)
122 KOG2754 Oligosaccharyltransfer 25.9 43 0.00093 26.4 1.5 32 49-80 332-363 (443)
123 PF05958 tRNA_U5-meth_tr: tRNA 25.8 39 0.00085 25.4 1.3 14 50-63 304-317 (352)
124 PF02630 SCO1-SenC: SCO1/SenC; 24.8 53 0.0012 22.0 1.7 11 49-59 89-99 (174)
125 COG1999 Uncharacterized protei 24.7 57 0.0012 22.8 1.8 14 46-59 102-115 (207)
126 PF09493 DUF2389: Tryptophan-r 24.0 1.2E+02 0.0026 17.2 2.8 33 25-65 13-45 (60)
127 PF11826 DUF3346: Protein of u 23.0 54 0.0012 23.5 1.4 45 11-56 11-59 (225)
No 1
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=99.91 E-value=6.1e-25 Score=162.03 Aligned_cols=81 Identities=49% Similarity=0.840 Sum_probs=73.4
Q ss_pred ceeeeEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcchhhhccCCCCCCccCCCCCCCceeccc
Q 039200 7 AVSNKRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPYMRERMSKLDRPSFVDSFHPGGVSSSRP 86 (88)
Q Consensus 7 ~~~n~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy~R~~m~~~~~~~Y~~p~~~G~~m~g~~ 86 (88)
|+.|+||+|+++++|+|+.+||+++++++.+..+.++ +++||||||||||||||.||++.+..+|++|+.+|+++.|++
T Consensus 1 ~v~nkqvvLk~y~~g~P~~~d~~~~~~~~el~~~~~s-~~vlvknlYLS~DPymR~rM~~~~~~~y~~~~~~G~pi~g~G 79 (343)
T KOG1196|consen 1 MVTNKQVILKNYVTGFPTESDFEFTTTTVELRVPLGS-GEVLVKNLYLSCDPYMRIRMGKPDPSDYAPPYEPGKPIDGFG 79 (343)
T ss_pred CccccEEEEeccCCCCCccccceeeeeeecccCCCCC-ccEEeEeeeecCCHHHHhhccCCCcccccCcccCCcEecCCc
Confidence 4689999999999999999999999988766566687 999999999999999999999876556999999999999999
Q ss_pred CC
Q 039200 87 IS 88 (88)
Q Consensus 87 Vg 88 (88)
||
T Consensus 80 V~ 81 (343)
T KOG1196|consen 80 VA 81 (343)
T ss_pred eE
Confidence 86
No 2
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=99.90 E-value=2.2e-24 Score=159.24 Aligned_cols=74 Identities=34% Similarity=0.604 Sum_probs=68.5
Q ss_pred eeeEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcchhhhccCCCCCCccCCCCCCCceecccCC
Q 039200 9 SNKRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPYMRERMSKLDRPSFVDSFHPGGVSSSRPIS 88 (88)
Q Consensus 9 ~n~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy~R~~m~~~~~~~Y~~p~~~G~~m~g~~Vg 88 (88)
.|++|+|+.||.|.|..++|+++|.++| .| ++ ||+|+||+|+|+|||||+||++. +||++|+++|++|.|.+||
T Consensus 8 ~~~~~~la~rP~g~p~~d~F~lee~~vp--~p-~~-GqvLl~~~ylS~DPymRgrm~d~--~SY~~P~~lG~~~~gg~V~ 81 (340)
T COG2130 8 VNRRIVLASRPEGAPVPDDFRLEEVDVP--EP-GE-GQVLLRTLYLSLDPYMRGRMSDA--PSYAPPVELGEVMVGGTVA 81 (340)
T ss_pred hhheeeeccCCCCCCCCCCceeEeccCC--CC-Cc-CceEEEEEEeccCHHHeecccCC--cccCCCcCCCceeECCeeE
Confidence 3699999999999999999999999997 34 77 99999999999999999999986 4999999999999999885
No 3
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=99.59 E-value=4.8e-15 Score=109.33 Aligned_cols=80 Identities=48% Similarity=0.843 Sum_probs=63.5
Q ss_pred cccceeeeEEEEccCCCCCCCCCCcEEEEe-ecccccCCCCCCeEEEEeEEEeeCcchhhhccCCCCCCccCCCCCCCce
Q 039200 4 EQEAVSNKRVILSNYVTGFPNESDMKITSG-SIKLKVADGSKDTVLLKNLYLSCGPYMRERMSKLDRPSFVDSFHPGGVS 82 (88)
Q Consensus 4 ~~~~~~n~~vvl~~~P~g~p~~~~f~l~~~-~~~~~~~~~~~gevLvr~l~lSvDPy~R~~m~~~~~~~Y~~p~~~G~~m 82 (88)
||+.++||+|+|++||+|.|+++||++++. +++.+.++++ ||||||+.+.|+||+.|.++.... ..|.+|+.+|..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~-gevlVkv~a~~inp~~~~~~~~~~-~~~~~p~~~G~~~ 80 (348)
T PLN03154 3 EGQVVENKQVILKNYIDGIPKETDMEVKLGNKIELKAPKGS-GAFLVKNLYLSCDPYMRGRMRDFH-DSYLPPFVPGQRI 80 (348)
T ss_pred CCccccceEEEEecCCCCCCCcccEEEEeecccCCCCCCCC-CeEEEEEEEEccCHHHHHhhhccC-CCCCCCcCCCCee
Confidence 678899999999999999999999999996 2443334466 999999999999999999886421 2455677788766
Q ss_pred ecc
Q 039200 83 SSR 85 (88)
Q Consensus 83 ~g~ 85 (88)
.|.
T Consensus 81 ~~~ 83 (348)
T PLN03154 81 EGF 83 (348)
T ss_pred Eee
Confidence 543
No 4
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=98.87 E-value=1.1e-08 Score=74.50 Aligned_cols=77 Identities=52% Similarity=0.893 Sum_probs=57.4
Q ss_pred eeeeEEEEccCCCCCCCCCCcEEEEeecccccC-CCCCCeEEEEeEEEeeCcchhhhccCCCCCCccCCCCCCCceecc
Q 039200 8 VSNKRVILSNYVTGFPNESDMKITSGSIKLKVA-DGSKDTVLLKNLYLSCGPYMRERMSKLDRPSFVDSFHPGGVSSSR 85 (88)
Q Consensus 8 ~~n~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~-~~~~gevLvr~l~lSvDPy~R~~m~~~~~~~Y~~p~~~G~~m~g~ 85 (88)
+.||+++++..-.+.|..++|++++.++|++.| +++ ||||||+.+.+++|+.+.++.......|.+|+.+|..+.|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~-~~vlv~v~~~~inp~d~~~~~g~~~~~~~~p~~~g~~~~g~ 78 (338)
T cd08295 1 VRNKQVILKAYVTGFPKESDLELRTTKLTLKVPPGGS-GDVLVKNLYLSCDPYMRGRMKGHDDSLYLPPFKPGEVITGY 78 (338)
T ss_pred CcceEEEEecCCCCCCCccceEEEEecCCcCCCCCCC-CeEEEEEEEEeeCHHHHHhhccCCccccCCCcCCCCeEecc
Confidence 368999999988877789999999999864433 366 99999999999999998877642111144567777555443
No 5
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=98.61 E-value=1.8e-07 Score=67.80 Aligned_cols=55 Identities=35% Similarity=0.587 Sum_probs=46.3
Q ss_pred eeeeEEEEccCC--CCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcchhhhcc
Q 039200 8 VSNKRVILSNYV--TGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPYMRERMS 65 (88)
Q Consensus 8 ~~n~~vvl~~~P--~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy~R~~m~ 65 (88)
|.||+++|+++| .|.|.++.|++++.+.| .|.++ ||||||+.+.+++|+.|..+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~-~evlV~v~a~gin~~d~~~~~ 57 (345)
T cd08293 1 MINKRVVLNSRPGKNGNPVAENFRVEECTLP--DELNE-GQVLVRTLYLSVDPYMRCRMN 57 (345)
T ss_pred CcceEEEEecccCCCCCCCccceEEEeccCC--CCCCC-CeEEEEEEEEecCHHHHhhcc
Confidence 358999999999 78999999999888776 33235 899999999999999886654
No 6
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=98.61 E-value=8.9e-08 Score=69.23 Aligned_cols=51 Identities=31% Similarity=0.558 Sum_probs=44.2
Q ss_pred eeEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcchhhhc
Q 039200 10 NKRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPYMRERM 64 (88)
Q Consensus 10 n~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy~R~~m 64 (88)
.|+|+|+++|++.+.++.|++++.++| .| ++ ||||||+.+.|++|++|..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~l~~~~~~~p--~~-~~-~evlv~v~a~~~n~~~~~g~ 51 (325)
T TIGR02825 1 AKTWTLKKHFVGYPTDSDFELKTVELP--PL-NN-GEVLLEALFLSVDPYMRVAA 51 (325)
T ss_pred CcEEEEecCCCCCCCCCceEEEeccCC--CC-CC-CcEEEEEEEEecCHHHhccc
Confidence 378999999999999999999887775 33 66 89999999999999988654
No 7
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=98.32 E-value=2e-06 Score=61.57 Aligned_cols=54 Identities=35% Similarity=0.564 Sum_probs=45.2
Q ss_pred eeeEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcchhhhccC
Q 039200 9 SNKRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPYMRERMSK 66 (88)
Q Consensus 9 ~n~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy~R~~m~~ 66 (88)
+||+|+|..+|+|.+.++.+++++.+++ . +++ |+++||+++.+++|..+.++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~-~~~-~~v~Vkv~~~~i~~~~~~~~~~ 54 (329)
T cd05288 1 SNRQVVLAKRPEGPPPPDDFELVEVPLP--E-LKD-GEVLVRTLYLSVDPYMRGWMSD 54 (329)
T ss_pred CCcEEEEeccCCCCCCccceeEEeccCC--C-CCC-CeEEEEEEEEecCHHHhhhhcc
Confidence 5899999999988777889999887775 2 366 8999999999999987776654
No 8
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=97.79 E-value=5.2e-05 Score=54.30 Aligned_cols=49 Identities=33% Similarity=0.532 Sum_probs=40.5
Q ss_pred eeEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcchhh
Q 039200 10 NKRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPYMRE 62 (88)
Q Consensus 10 n~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy~R~ 62 (88)
-|+|+++++..|.+..+.+++++.++| .| ++ ||||||+.+.++||++|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~p--~~-~~-~evlVkv~a~~in~~~~~ 51 (329)
T cd08294 3 AKTWVLKKHFDGKPKESDFELVEEELP--PL-KD-GEVLCEALFLSVDPYMRP 51 (329)
T ss_pred ceEEEEecCCCCCCCccceEEEecCCC--CC-CC-CcEEEEEEEEecCHHHhc
Confidence 478999997677667788999888876 33 66 899999999999998875
No 9
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=92.96 E-value=0.3 Score=35.33 Aligned_cols=29 Identities=3% Similarity=0.202 Sum_probs=23.6
Q ss_pred CCcEEEEeecccccCCCCCCeEEEEeEEEeeCc
Q 039200 26 SDMKITSGSIKLKVADGSKDTVLLKNLYLSCGP 58 (88)
Q Consensus 26 ~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDP 58 (88)
+++++++.++| .| ++ ||+|||+.+.+++|
T Consensus 11 ~~l~~~e~~~p--~~-~~-~evlVkv~~~gi~~ 39 (308)
T TIGR01202 11 NQIELREVTLT--PP-SP-GDLVVEIWYSGIST 39 (308)
T ss_pred CeEEEEEecCC--CC-CC-CeEEEEEEEEeecc
Confidence 46888887775 33 55 89999999999987
No 10
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=92.95 E-value=0.51 Score=33.76 Aligned_cols=35 Identities=14% Similarity=0.111 Sum_probs=26.5
Q ss_pred CcEEEEeecccccCCCCCCeEEEEeEEEeeCcchhhhcc
Q 039200 27 DMKITSGSIKLKVADGSKDTVLLKNLYLSCGPYMRERMS 65 (88)
Q Consensus 27 ~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy~R~~m~ 65 (88)
.|++.+.++| . +++ ||++||+++.+++|.......
T Consensus 11 ~~~~~~~~~~--~-l~~-~~v~v~v~~~~l~~~d~~~~~ 45 (334)
T cd08234 11 ELEVEEVPVP--E-PGP-DEVLIKVAACGICGTDLHIYE 45 (334)
T ss_pred ceEEEeccCC--C-CCC-CeEEEEEEEEeEchhhhHHhc
Confidence 5788777765 2 355 899999999999988665543
No 11
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=91.44 E-value=1.1 Score=31.94 Aligned_cols=43 Identities=12% Similarity=0.113 Sum_probs=31.8
Q ss_pred eeEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcch
Q 039200 10 NKRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPYM 60 (88)
Q Consensus 10 n~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy~ 60 (88)
||.|.+.++. .+++|++.+.++| .+ ++ |+++||+.+.++++.-
T Consensus 1 ~~~~~~~~~~----~~~~~~~~~~~~~--~~-~~-~~v~i~v~~~~i~~~d 43 (331)
T cd08273 1 NREVVVTRRG----GPEVLKVVEADLP--EP-AA-GEVVVKVEASGVSFAD 43 (331)
T ss_pred CeeEEEccCC----CcccEEEeccCCC--CC-CC-CeEEEEEEEEecCHHH
Confidence 5777776443 2467999888775 33 55 8999999999998753
No 12
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=91.30 E-value=0.57 Score=33.86 Aligned_cols=30 Identities=17% Similarity=0.147 Sum_probs=23.8
Q ss_pred CCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 26 SDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 26 ~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
+.|++++.+.| .+ ++ +|++||+++.++++.
T Consensus 11 ~~~~~~~~~~p--~~-~~-~evlV~v~~~~v~~~ 40 (341)
T PRK05396 11 PGLWLTDVPVP--EP-GP-NDVLIKVKKTAICGT 40 (341)
T ss_pred CceEEEECCCC--CC-CC-CeEEEEEEEEEEccc
Confidence 56888888775 23 55 899999999999774
No 13
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=91.16 E-value=0.86 Score=32.76 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=32.6
Q ss_pred eEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcchhhhc
Q 039200 11 KRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPYMRERM 64 (88)
Q Consensus 11 ~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy~R~~m 64 (88)
|.+++.+ +.+.+..+.|++.+.+.| .+ ++ |||+||+.+.++++.-..+.
T Consensus 2 ~a~~~~~-~~~~~~~~~~~~~~~~~p--~~-~~-~evlv~v~~~gi~~~d~~~~ 50 (324)
T cd08291 2 KALLLEE-YGKPLEVKELSLPEPEVP--EP-GP-GEVLIKVEAAPINPSDLGFL 50 (324)
T ss_pred eEEEEee-cCCCccccEEEecccCCC--CC-CC-CeEEEEEEEccCCHHHHHHh
Confidence 4555544 233223467888777665 33 66 89999999999998755544
No 14
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=91.14 E-value=0.78 Score=33.77 Aligned_cols=41 Identities=15% Similarity=-0.024 Sum_probs=30.2
Q ss_pred eeeEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 9 SNKRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 9 ~n~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
++|.+++.+.+ ..+++++.++| .+ ++ ||||||+.+.++.+.
T Consensus 2 ~~ka~~~~~~~------~~~~l~~~~~p--~~-~~-~evlIkv~a~gi~~~ 42 (369)
T cd08301 2 TCKAAVAWEAG------KPLVIEEVEVA--PP-QA-MEVRIKILHTSLCHT 42 (369)
T ss_pred ccEEEEEecCC------CCcEEEEeeCC--CC-CC-CeEEEEEEEEeeCch
Confidence 46777776543 23788877775 23 66 899999999999886
No 15
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=90.07 E-value=1.6 Score=32.27 Aligned_cols=47 Identities=15% Similarity=0.135 Sum_probs=31.5
Q ss_pred eEEEEccC--CCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcchh
Q 039200 11 KRVILSNY--VTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPYMR 61 (88)
Q Consensus 11 ~~vvl~~~--P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy~R 61 (88)
|.+++.++ |+++=.++.+++++.++| .+ ++ +|||||+.+.++.+.=.
T Consensus 2 ka~~~~~~g~~~~~~~~~~l~~~~~~~P--~~-~~-~evlV~v~~~gi~~~D~ 50 (371)
T cd08281 2 RAAVLRETGAPTPYADSRPLVIEEVELD--PP-GP-GEVLVKIAAAGLCHSDL 50 (371)
T ss_pred cceEEEecccccccccCCCceEEEeecC--CC-CC-CeEEEEEEEEeeCccch
Confidence 45555553 222223567899888876 33 55 89999999999988633
No 16
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=89.83 E-value=1.2 Score=32.84 Aligned_cols=41 Identities=15% Similarity=0.013 Sum_probs=29.8
Q ss_pred eeeEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 9 SNKRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 9 ~n~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
++|.+++.+.. ..+++++.++| .+ ++ +|++||+.+.++.+.
T Consensus 2 ~~ka~~~~~~~------~~~~~~~~~~p--~~-~~-~evlVkv~~~gi~~s 42 (365)
T cd08277 2 KCKAAVAWEAG------KPLVIEEIEVA--PP-KA-NEVRIKMLATSVCHT 42 (365)
T ss_pred ccEEEEEccCC------CCcEEEEEECC--CC-CC-CEEEEEEEEEeechh
Confidence 46777776532 23788887775 33 55 899999999999875
No 17
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=89.56 E-value=1.9 Score=31.04 Aligned_cols=43 Identities=19% Similarity=0.118 Sum_probs=30.2
Q ss_pred eEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcchhhhc
Q 039200 11 KRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPYMRERM 64 (88)
Q Consensus 11 ~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy~R~~m 64 (88)
|.|++.+. ..+++++.++| . .++ +|++||+++.+++|.-..+.
T Consensus 2 ~a~~~~~~-------~~l~~~~~~~~--~-l~~-~~v~v~v~~~~~n~~d~~~~ 44 (343)
T cd08236 2 KALVLTGP-------GDLRYEDIPKP--E-PGP-GEVLVKVKACGICGSDIPRY 44 (343)
T ss_pred eeEEEecC-------CceeEEecCCC--C-CCC-CeEEEEEEEEEECccchHhh
Confidence 46777654 23677777765 2 355 89999999999998755443
No 18
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=89.48 E-value=0.99 Score=32.10 Aligned_cols=41 Identities=17% Similarity=0.215 Sum_probs=29.5
Q ss_pred eEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 11 KRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 11 ~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
|.+++++ ..| ++.+++++.++| .+ ++ ++++||+.+.++++.
T Consensus 1 ~a~~~~~-~~~---~~~~~~~~~~~p--~~-~~-~~v~v~v~~~~i~~~ 41 (323)
T TIGR02823 1 KALVVEK-EDG---KVSAQVETLDLS--DL-PE-GDVLIKVAYSSLNYK 41 (323)
T ss_pred CeEEEcc-CCC---CcceeEeecCCC--CC-CC-CeEEEEEEEEEcCHH
Confidence 4566665 223 257888887775 23 55 899999999999885
No 19
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=89.12 E-value=1.2 Score=32.61 Aligned_cols=35 Identities=14% Similarity=0.127 Sum_probs=27.3
Q ss_pred cEEEEeecccccCCCCCCeEEEEeEEEeeCcchhhhccC
Q 039200 28 MKITSGSIKLKVADGSKDTVLLKNLYLSCGPYMRERMSK 66 (88)
Q Consensus 28 f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy~R~~m~~ 66 (88)
+++++.++| .+ ++ ||||||+++.++.+.=+.++++
T Consensus 13 l~~~~~p~p--~~-~~-~evlVkv~a~gi~~~D~~~~~g 47 (355)
T cd08230 13 VRVVDIPEP--EP-TP-GEVLVRTLEVGVCGTDREIVAG 47 (355)
T ss_pred CeEEeCCCC--CC-CC-CeEEEEEEEEEeccccHHHHcC
Confidence 888877765 33 55 8999999999999987766543
No 20
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=89.02 E-value=0.73 Score=34.25 Aligned_cols=31 Identities=16% Similarity=0.187 Sum_probs=23.7
Q ss_pred CCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 25 ESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 25 ~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
++++++++.+.| .| ++ ||||||+.+.|+.|-
T Consensus 12 ~~~l~~~e~~~P--~p-~~-geVlVrV~a~gvN~~ 42 (326)
T COG0604 12 PEVLKVVEVPEP--EP-GP-GEVLVRVKAAGVNPI 42 (326)
T ss_pred CceeEEEecCCC--CC-CC-CeEEEEEEEeecChH
Confidence 344788777775 33 65 899999999999874
No 21
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=88.99 E-value=0.82 Score=33.52 Aligned_cols=31 Identities=19% Similarity=0.146 Sum_probs=23.6
Q ss_pred CCcEEEEeecccccCCCCCCeEEEEeEEEeeCcchh
Q 039200 26 SDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPYMR 61 (88)
Q Consensus 26 ~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy~R 61 (88)
.++++++.+.| + ++ ||||||+.+.++-+.=.
T Consensus 12 ~~~~~~~~~~P---~-~~-~eVlVkv~a~gIc~sD~ 42 (341)
T cd08237 12 KFFEVTYEEEN---L-RE-DWVIVRPTYLSICHADQ 42 (341)
T ss_pred ceEEEeecCCC---C-CC-CeEEEEEEEEEEcCccH
Confidence 56888877765 2 55 89999999999866543
No 22
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=88.96 E-value=1.1 Score=32.48 Aligned_cols=38 Identities=11% Similarity=0.032 Sum_probs=26.9
Q ss_pred eEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 11 KRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 11 ~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
|.|++.+ | +.+++++.++| .+ ++ +|||||+++.++.+.
T Consensus 2 ka~~~~~-~------~~l~~~~~~~p--~~-~~-~evlV~v~a~~~~~~ 39 (351)
T cd08233 2 KAARYHG-R------KDIRVEEVPEP--PV-KP-GEVKIKVAWCGICGS 39 (351)
T ss_pred ceEEEec-C------CceEEEeccCC--CC-CC-CeEEEEEEEEEECcc
Confidence 4667643 2 35778777665 33 66 899999999999764
No 23
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=88.67 E-value=1.3 Score=31.37 Aligned_cols=41 Identities=12% Similarity=0.083 Sum_probs=29.3
Q ss_pred eEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 11 KRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 11 ~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
|.|++.+ +.+ + +.+++++.+.| .+ ++ |+++||+.+.++++.
T Consensus 2 ~a~~~~~-~~~-~--~~~~~~~~~~p--~~-~~-~~v~v~v~~~~i~~~ 42 (324)
T cd08288 2 KALVLEK-DDG-G--TSAELRELDES--DL-PE-GDVTVEVHYSTLNYK 42 (324)
T ss_pred eeEEEec-cCC-C--cceEEEECCCC--CC-CC-CeEEEEEEEEecCHH
Confidence 5677753 333 2 66888887765 23 55 899999999999863
No 24
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=88.05 E-value=2.8 Score=30.59 Aligned_cols=37 Identities=8% Similarity=0.092 Sum_probs=27.3
Q ss_pred CCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcchh
Q 039200 21 GFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPYMR 61 (88)
Q Consensus 21 g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy~R 61 (88)
|.+..+.+++++.+.| .+ ++ ||+|||+.+.++.+.-.
T Consensus 8 g~~~~~~l~~~~~p~P--~~-~~-~evlVkv~~~gi~~~D~ 44 (329)
T TIGR02822 8 GPIEDGPLRFVERPVP--RP-GP-GELLVRVRACGVCRTDL 44 (329)
T ss_pred CcCCCCCceEEeCCCC--CC-CC-CeEEEEEEEEeecchhH
Confidence 3344467899877775 33 66 89999999999988643
No 25
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=87.72 E-value=1.7 Score=30.54 Aligned_cols=40 Identities=5% Similarity=0.070 Sum_probs=28.9
Q ss_pred eEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 11 KRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 11 ~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
|.|++.+ .+ ++.|++++.++| .+ ++ +|++||+++.++++.
T Consensus 2 ~~~~~~~--~~---~~~~~~~~~~~p--~~-~~-~ev~v~v~~~~i~~~ 41 (305)
T cd08270 2 RALVVDP--DA---PLRLRLGEVPDP--QP-AP-HEALVRVAAISLNRG 41 (305)
T ss_pred eEEEEcc--CC---CceeEEEecCCC--CC-CC-CEEEEEEEEEecCHH
Confidence 5666644 23 457888877775 23 55 899999999999874
No 26
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=87.19 E-value=1.8 Score=30.55 Aligned_cols=40 Identities=23% Similarity=0.217 Sum_probs=29.3
Q ss_pred CCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcchhhhc
Q 039200 21 GFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPYMRERM 64 (88)
Q Consensus 21 g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy~R~~m 64 (88)
|.+.+++|++++.+.| .+ ++ ++++||+.+.+++++-...+
T Consensus 7 ~~~~~~~~~~~~~~~~--~~-~~-~~v~i~v~~~~~~~~d~~~~ 46 (323)
T cd05282 7 GEPLPLVLELVSLPIP--PP-GP-GEVLVRMLAAPINPSDLITI 46 (323)
T ss_pred CCCccceEEeEeCCCC--CC-CC-CeEEEEEEeccCCHHHHHHh
Confidence 4555567888777665 23 56 89999999999999765544
No 27
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=85.52 E-value=2.6 Score=29.77 Aligned_cols=39 Identities=21% Similarity=0.126 Sum_probs=26.9
Q ss_pred eEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 11 KRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 11 ~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
|.|++.+ + .+.+.+.+.+.| . +++ |+++||+++.+++++
T Consensus 2 ~a~~~~~-~-----~~~~~~~~~~~p--~-~~~-~~v~v~v~~~~i~~~ 40 (332)
T cd08259 2 KAAILHK-P-----NKPLQIEEVPDP--E-PGP-GEVLIKVKAAGVCYR 40 (332)
T ss_pred eEEEEec-C-----CCceEEEEccCC--C-CCC-CeEEEEEEEEecchh
Confidence 4666654 1 235677666654 2 355 899999999999985
No 28
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=85.12 E-value=2.1 Score=30.60 Aligned_cols=31 Identities=13% Similarity=0.106 Sum_probs=23.8
Q ss_pred CCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 25 ESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 25 ~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
++.+++++.++| .+ ++ +||+||+.+.++++.
T Consensus 14 ~~~~~~~~~~~p--~~-~~-~ev~Ikv~~~~i~~~ 44 (336)
T TIGR02817 14 PDALVDIDLPKP--KP-GG-RDLLVEVKAISVNPV 44 (336)
T ss_pred cccceecccCCC--CC-CC-CEEEEEEEEEEcChH
Confidence 466777776665 23 66 899999999999885
No 29
>PLN02740 Alcohol dehydrogenase-like
Probab=84.24 E-value=4.1 Score=30.27 Aligned_cols=44 Identities=14% Similarity=0.072 Sum_probs=30.4
Q ss_pred cceeeeEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 6 EAVSNKRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 6 ~~~~n~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
++++.|.+++... . +.+++++.+.| .+ ++ |||+||+.+.++.+.
T Consensus 7 ~~~~mka~~~~~~-~-----~~~~~~e~~~P--~~-~~-~eVlV~v~~~gic~s 50 (381)
T PLN02740 7 KVITCKAAVAWGP-G-----EPLVMEEIRVD--PP-QK-MEVRIKILYTSICHT 50 (381)
T ss_pred cceeeEEEEEecC-C-----CCcEEEEeeCC--CC-CC-CeEEEEEEEEecChh
Confidence 4556777777532 1 23677776665 33 55 899999999999774
No 30
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=84.20 E-value=2.5 Score=31.56 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=30.4
Q ss_pred eeeEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCc
Q 039200 9 SNKRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGP 58 (88)
Q Consensus 9 ~n~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDP 58 (88)
+.|.|++...-.|.|. +.+++.+.+.| .+ ++ |+++||+++.++..
T Consensus 7 ~~~a~~~~~~~~~~~~-~~~~~~~~~~p--~l-~~-~evlV~v~~~gi~~ 51 (398)
T TIGR01751 7 TMYAFAIREERDGDPR-QAIQLEVVPVP--EL-GP-GEVLVAVMAAGVNY 51 (398)
T ss_pred hhhheEEecccCCCcc-cceEEeecCCC--CC-CC-CeEEEEEEEEecCc
Confidence 4588888531123222 57888777765 33 55 89999999999973
No 31
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=84.04 E-value=2.2 Score=30.61 Aligned_cols=43 Identities=23% Similarity=0.314 Sum_probs=29.5
Q ss_pred eEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 11 KRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 11 ~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
|.|++.+. |.+. +.+++++.+.| .+..+ ++++||+.+.++.+.
T Consensus 2 ~a~~~~~~--~~~~-~~~~~~~~~~p--~~~~~-~~v~v~v~~~gi~~~ 44 (341)
T cd08290 2 KALVYTEH--GEPK-EVLQLESYEIP--PPGPP-NEVLVKMLAAPINPA 44 (341)
T ss_pred ceEEEccC--CCch-hheEEeecCCC--CCCCC-CEEEEEEEecCCCHH
Confidence 46677544 3222 67888877775 23344 799999999999875
No 32
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=83.89 E-value=7.1 Score=27.52 Aligned_cols=45 Identities=20% Similarity=0.127 Sum_probs=31.1
Q ss_pred eEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcchhhh
Q 039200 11 KRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPYMRER 63 (88)
Q Consensus 11 ~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy~R~~ 63 (88)
|.|+++.+ + ..++|++++.+.+ .+ ++ +|++||+.+.++++.-+..
T Consensus 2 ~a~~~~~~--~--~~~~~~~~~~~~~--~~-~~-~~v~i~v~~~~i~~~d~~~ 46 (336)
T cd08276 2 KAWRLSGG--G--GLDNLKLVEEPVP--EP-GP-GEVLVRVHAVSLNYRDLLI 46 (336)
T ss_pred eEEEEecc--C--CCcceEEEeccCC--CC-CC-CeEEEEEEEEecCHHHHHH
Confidence 57777654 2 2356788766654 23 55 8999999999999864443
No 33
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=83.82 E-value=4.2 Score=29.99 Aligned_cols=29 Identities=14% Similarity=0.056 Sum_probs=22.5
Q ss_pred CcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 27 DMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 27 ~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
.+++++.+.| .+ ++ ||||||+.+.++.+.
T Consensus 14 ~~~~~~~~~P--~~-~~-~eVlIrv~a~gi~~~ 42 (368)
T cd08300 14 PLSIEEVEVA--PP-KA-GEVRIKILATGVCHT 42 (368)
T ss_pred CcEEEEeecC--CC-CC-CEEEEEEEEEEechh
Confidence 4678777765 33 66 899999999999774
No 34
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=83.52 E-value=3.5 Score=30.36 Aligned_cols=41 Identities=7% Similarity=0.047 Sum_probs=28.3
Q ss_pred eeeEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 9 SNKRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 9 ~n~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
+.|.+++.+.. ..+++++.++| .+ ++ +|++||+.+.++.+.
T Consensus 2 ~~~a~~~~~~~------~~~~~~~~~~p--~~-~~-~~v~Vkv~a~gi~~~ 42 (365)
T cd08278 2 KTTAAVVREPG------GPFVLEDVELD--DP-RP-DEVLVRIVATGICHT 42 (365)
T ss_pred ccEEeeeccCC------CcceEEEeecC--CC-CC-CeEEEEEEEeecCcc
Confidence 34677776521 13677777765 23 55 899999999999774
No 35
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=83.44 E-value=7.4 Score=27.66 Aligned_cols=43 Identities=16% Similarity=0.394 Sum_probs=29.5
Q ss_pred eEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 11 KRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 11 ~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
|.|++.+.-.+. .+-+++++.+.| .+ ++ ++++||+.+.++++.
T Consensus 3 ~~~~~~~~~~~~--~~~~~~~~~~~~--~~-~~-~ev~i~v~~~gi~~~ 45 (329)
T cd08250 3 RKLVVHRLSPNF--REATSIVDVPVP--LP-GP-GEVLVKNRFVGINAS 45 (329)
T ss_pred eEEEeccCCCCc--ccCceEEecCCC--CC-CC-CEEEEEEEEEecCHH
Confidence 567776632333 344788776654 33 55 899999999999875
No 36
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=83.30 E-value=3.7 Score=29.57 Aligned_cols=30 Identities=17% Similarity=0.143 Sum_probs=23.3
Q ss_pred CCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 26 SDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 26 ~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
..+++++.++| .+ ++ +||+||+.+.++.+.
T Consensus 10 ~~l~~~~~~~p--~~-~~-~evlV~v~~~gi~~~ 39 (339)
T cd08239 10 RTVELREFPVP--VP-GP-GEVLLRVKASGLCGS 39 (339)
T ss_pred CceEEEecCCC--CC-CC-CeEEEEEEEEEeccc
Confidence 46888777765 33 55 899999999999875
No 37
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=82.71 E-value=3.3 Score=29.53 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=28.6
Q ss_pred eEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcch
Q 039200 11 KRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPYM 60 (88)
Q Consensus 11 ~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy~ 60 (88)
|.+++.+ +.+.-.++.++.++.+.| .+ .+ |+++||+++.++++.-
T Consensus 2 ~~~~~~~-~~~~~~~~~~~~~~~~~~--~~-~~-~~v~v~v~~~~i~~~d 46 (336)
T cd08252 2 KAIGFTQ-PLPITDPDSLIDIELPKP--VP-GG-RDLLVRVEAVSVNPVD 46 (336)
T ss_pred ceEEecC-CCCCCcccceeEccCCCC--CC-CC-CEEEEEEEEEEcCHHH
Confidence 4566665 222223345666555554 22 55 8999999999999864
No 38
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=82.48 E-value=4.9 Score=29.44 Aligned_cols=40 Identities=13% Similarity=0.096 Sum_probs=28.1
Q ss_pred eEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcch
Q 039200 11 KRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPYM 60 (88)
Q Consensus 11 ~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy~ 60 (88)
|.+++.+. |. .+++++.++| .+ ++ ||||||+.+.++.+.-
T Consensus 3 ka~~~~~~--~~----~~~~~~~~~p--~~-~~-~evlV~v~~~gi~~~D 42 (358)
T TIGR03451 3 RGVIARSK--GA----PVELETIVVP--DP-GP-GEVIVDIQACGVCHTD 42 (358)
T ss_pred EEEEEccC--CC----CCEEEEEECC--CC-CC-CeEEEEEEEEeecHHH
Confidence 56666543 21 2688877775 33 66 8999999999998863
No 39
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=82.30 E-value=3.7 Score=29.72 Aligned_cols=28 Identities=11% Similarity=-0.066 Sum_probs=21.4
Q ss_pred cEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 28 MKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 28 f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
+++.+.++| .+ ++ |||+||+.+.++++.
T Consensus 13 ~~~~~~~~p--~~-~~-~ev~V~v~~~~i~~~ 40 (350)
T cd08240 13 LEEVEIDTP--KP-PG-TEVLVKVTACGVCHS 40 (350)
T ss_pred ceEEecCCC--CC-CC-CeEEEEEEEEecCch
Confidence 677766665 23 55 899999999999874
No 40
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=82.07 E-value=2.2 Score=29.88 Aligned_cols=33 Identities=18% Similarity=0.043 Sum_probs=24.7
Q ss_pred cEEEEeecccccCCCCCCeEEEEeEEEeeCcchhhhc
Q 039200 28 MKITSGSIKLKVADGSKDTVLLKNLYLSCGPYMRERM 64 (88)
Q Consensus 28 f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy~R~~m 64 (88)
|++.+.+++ . .++ ++|+||+++.++++......
T Consensus 14 ~~~~~~~~~--~-~~~-~~v~v~v~~~~i~~~d~~~~ 46 (319)
T cd08267 14 LLEVEVPIP--T-PKP-GEVLVKVHAASVNPVDWKLR 46 (319)
T ss_pred hccccCCCC--C-CCC-CEEEEEEEEeeCCHHHHHHH
Confidence 567666664 2 366 89999999999999765554
No 41
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=82.00 E-value=3.7 Score=29.48 Aligned_cols=29 Identities=17% Similarity=0.063 Sum_probs=22.7
Q ss_pred CcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 27 DMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 27 ~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
.|++++.+.| . +++ |+|+||+.+.++++.
T Consensus 10 ~~~~~~~~~p--~-~~~-~~v~V~v~~~~~~~~ 38 (341)
T cd08262 10 PLVVRDVPDP--E-PGP-GQVLVKVLACGICGS 38 (341)
T ss_pred ceEEEecCCC--C-CCC-CeEEEEEEEEEEccc
Confidence 5888777765 2 366 899999999999864
No 42
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=81.58 E-value=2.9 Score=30.00 Aligned_cols=31 Identities=10% Similarity=0.064 Sum_probs=24.6
Q ss_pred CCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 25 ESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 25 ~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
.+.|++++.++| . +++ +||+||+.+.++++.
T Consensus 6 ~~~~~~~~~~~p--~-l~~-~~v~I~v~~~~i~~~ 36 (339)
T cd08232 6 AGDLRVEERPAP--E-PGP-GEVRVRVAAGGICGS 36 (339)
T ss_pred CCceEEEEcCCC--C-CCC-CEEEEEEEEEEECcc
Confidence 367888888775 2 366 899999999999875
No 43
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=81.44 E-value=4.4 Score=29.06 Aligned_cols=31 Identities=6% Similarity=-0.037 Sum_probs=23.0
Q ss_pred CcEEEEeecccccCCCCCCeEEEEeEEEeeCcch
Q 039200 27 DMKITSGSIKLKVADGSKDTVLLKNLYLSCGPYM 60 (88)
Q Consensus 27 ~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy~ 60 (88)
.+++.+.++| .+.++ ++++||+.+.++++.-
T Consensus 11 ~~~~~~~~~p--~~~~~-~~v~i~v~~~~i~~~d 41 (347)
T cd05278 11 KIGLEEVPDP--KIQGP-HDAIVRVTATSICGSD 41 (347)
T ss_pred ceEEEEcCCC--CCCCC-CeEEEEEEEEEechhh
Confidence 4777776664 23144 8999999999999964
No 44
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=81.22 E-value=4.8 Score=29.33 Aligned_cols=32 Identities=13% Similarity=0.013 Sum_probs=24.2
Q ss_pred CCcEEEEeecccccCCCCCCeEEEEeEEEeeCcchhh
Q 039200 26 SDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPYMRE 62 (88)
Q Consensus 26 ~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy~R~ 62 (88)
.++++++.+.| + ++ ||||||+.+.++-+.=..
T Consensus 14 ~~~~~~~~~~p---~-~~-~evlVkv~a~gic~sD~~ 45 (343)
T PRK09880 14 KDVAVTEQEIE---W-NN-NGTLVQITRGGICGSDLH 45 (343)
T ss_pred CceEEEecCCC---C-CC-CeEEEEEEEEEECccccH
Confidence 56788777664 2 55 899999999999887443
No 45
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=81.13 E-value=4.8 Score=28.86 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=26.8
Q ss_pred eEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 11 KRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 11 ~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
|.|++.+ + ..+++++.+++ . +.+ ++++||.++.++++.
T Consensus 2 ~~~~~~~-~------~~~~~~~~~~~--~-l~~-~~v~i~v~~~~l~~~ 39 (343)
T cd08235 2 KAAVLHG-P------NDVRLEEVPVP--E-PGP-GEVLVKVRACGICGT 39 (343)
T ss_pred eEEEEec-C------CceEEEEccCC--C-CCC-CeEEEEEEEeeeccc
Confidence 5666643 2 23677766664 2 355 899999999999986
No 46
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=81.04 E-value=5.7 Score=28.31 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=28.6
Q ss_pred eEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 11 KRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 11 ~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
|.|++. . .+.+..+++++++.+.+ .+ ++ +||+||+.+.++++.
T Consensus 2 ~~~~~~-~-~~~~~~~~~~~~~~~~~--~~-~~-~ev~irv~~~~i~~~ 44 (329)
T cd08298 2 KAMVLE-K-PGPIEENPLRLTEVPVP--EP-GP-GEVLIKVEACGVCRT 44 (329)
T ss_pred eEEEEe-c-CCCCCCCCceEEeccCC--CC-CC-CEEEEEEEEEeccHH
Confidence 455552 2 23334567888777665 22 55 899999999999874
No 47
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=80.71 E-value=5.5 Score=28.08 Aligned_cols=36 Identities=11% Similarity=0.014 Sum_probs=27.3
Q ss_pred CCcEEEEeecccccCCCCCCeEEEEeEEEeeCcchhhhcc
Q 039200 26 SDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPYMRERMS 65 (88)
Q Consensus 26 ~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy~R~~m~ 65 (88)
+.+++++.++| .+ ++ ++++||..+.++++.-..++.
T Consensus 13 ~~~~~~~~~~p--~~-~~-~~v~v~v~~~~i~~~d~~~~~ 48 (325)
T cd05280 13 VSLFLRTLPLD--DL-PE-GDVLIRVHYSSLNYKDALAAT 48 (325)
T ss_pred CcceEEeCCCC--CC-CC-CeEEEEEEEeecChHHHHHhc
Confidence 56888877775 23 55 899999999999987555543
No 48
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=80.44 E-value=4.1 Score=29.01 Aligned_cols=41 Identities=10% Similarity=0.025 Sum_probs=28.9
Q ss_pred eEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 11 KRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 11 ~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
|.|.+.+.. .+.+|++++.+.+ .+ ++ ||++||+.+.++.+.
T Consensus 3 ~~~~~~~~~----~~~~~~~~~~~~~--~~-~~-~ev~i~v~~~gi~~~ 43 (327)
T PRK10754 3 KRIEFHKHG----GPEVLQAVEFTPA--DP-AE-NEVQVENKAIGINYI 43 (327)
T ss_pred eEEEEeccC----ChhHeEEeeccCC--CC-CC-CEEEEEEEEEEcCHH
Confidence 566664322 3468888887765 23 55 899999999998764
No 49
>PLN02827 Alcohol dehydrogenase-like
Probab=80.19 E-value=6.4 Score=29.38 Aligned_cols=30 Identities=7% Similarity=-0.034 Sum_probs=23.3
Q ss_pred CCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 26 SDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 26 ~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
+.+++++.++| .+ ++ ||||||+.+.++.+.
T Consensus 23 ~~~~~~e~~~P--~~-~~-~eVlVkv~~~gic~s 52 (378)
T PLN02827 23 EALVMEEVEVS--PP-QP-LEIRIKVVSTSLCRS 52 (378)
T ss_pred CCceEEEeecC--CC-CC-CEEEEEEEEEecChh
Confidence 35788887776 33 65 899999999998775
No 50
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=80.17 E-value=5.9 Score=28.44 Aligned_cols=31 Identities=16% Similarity=0.114 Sum_probs=24.4
Q ss_pred CCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 25 ESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 25 ~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
..++++.+.+++ .+ ++ ++++||+.+.++.+.
T Consensus 11 ~~~~~~~~~~~~--~~-~~-~~v~v~v~~~~i~~~ 41 (341)
T cd08297 11 EKPYEVKDVPVP--EP-GP-GEVLVKLEASGVCHT 41 (341)
T ss_pred CCCceEEEeeCC--CC-CC-CeEEEEEEEeecchh
Confidence 357888877775 23 55 899999999999885
No 51
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=79.96 E-value=7.6 Score=28.83 Aligned_cols=45 Identities=11% Similarity=0.031 Sum_probs=29.7
Q ss_pred ccceeeeEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 5 QEAVSNKRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 5 ~~~~~n~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
|..+++|..++.+.+. .+++++.+.| .+ ++ +||+||+.+.++.+.
T Consensus 3 ~~~~~~~a~~~~~~~~------~~~l~~~p~p--~~-~~-~~vlvkv~~~gi~~~ 47 (373)
T cd08299 3 GKVIKCKAAVLWEPKK------PFSIEEIEVA--PP-KA-HEVRIKIVATGICRS 47 (373)
T ss_pred cccceeEEEEEecCCC------CcEEEEeecC--CC-CC-CEEEEEEEEEEcCcc
Confidence 3445566555543222 3778877775 23 55 899999999999774
No 52
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=79.81 E-value=4.9 Score=29.62 Aligned_cols=41 Identities=12% Similarity=0.158 Sum_probs=26.8
Q ss_pred eEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcchh
Q 039200 11 KRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPYMR 61 (88)
Q Consensus 11 ~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy~R 61 (88)
+.|+ ...|.+. +++++.++| .+ ++ ||||||+.+.++.+.=.
T Consensus 11 ~~~~-~~~~~~~-----~~~~~~~~p--~~-~~-~eVlVrv~a~gi~~~D~ 51 (357)
T PLN02514 11 TGWA-ARDPSGH-----LSPYTYTLR--KT-GP-EDVVIKVIYCGICHTDL 51 (357)
T ss_pred EEEE-EecCCCC-----ceEEeecCC--CC-CC-CcEEEEEEEeccChHHH
Confidence 5555 4444432 466665654 23 55 89999999999987533
No 53
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=79.69 E-value=5.6 Score=28.39 Aligned_cols=29 Identities=21% Similarity=0.162 Sum_probs=22.6
Q ss_pred CcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 27 DMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 27 ~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
.|++++.+.| .+ ++ ||++||+++.++++.
T Consensus 12 ~~~~~~~~~~--~~-~~-~~v~V~v~~~~i~~~ 40 (334)
T PRK13771 12 GYRIEEVPDP--KP-GK-DEVVIKVNYAGLCYR 40 (334)
T ss_pred CcEEEeCCCC--CC-CC-CeEEEEEEEEeechh
Confidence 3788776665 23 56 899999999999985
No 54
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=79.13 E-value=10 Score=26.94 Aligned_cols=38 Identities=13% Similarity=0.133 Sum_probs=27.0
Q ss_pred eEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 11 KRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 11 ~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
|.|++.+ + ..+++++.++| .+ ++ +|++||+.+.|+.+.
T Consensus 2 ~a~~~~~-~------~~~~~~~~~~p--~~-~~-~~vlV~v~a~~i~~~ 39 (319)
T cd08242 2 KALVLDG-G------LDLRVEDLPKP--EP-PP-GEALVRVLLAGICNT 39 (319)
T ss_pred eeEEEeC-C------CcEEEEECCCC--CC-CC-CeEEEEEEEEEEccc
Confidence 5667753 1 24788777775 23 55 899999999999874
No 55
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=78.33 E-value=5.2 Score=29.66 Aligned_cols=46 Identities=11% Similarity=0.067 Sum_probs=29.8
Q ss_pred eeeeEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCc
Q 039200 8 VSNKRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGP 58 (88)
Q Consensus 8 ~~n~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDP 58 (88)
.++|.|++...-.|.+ ...+++++.++| . .++ |||+||+.+.++..
T Consensus 11 ~~~~a~~~~~~~~g~~-~~~~~~~~~~~p--~-l~~-~evlI~v~~~gi~~ 56 (393)
T cd08246 11 EKMYAFAIRPERYGDP-AQAIQLEDVPVP--E-LGP-GEVLVAVMAAGVNY 56 (393)
T ss_pred hhhhheeeecccCCCc-ccceEEeecCCC--C-CCC-CEEEEEEEEEeecc
Confidence 3457776642112432 245788777775 2 355 89999999999974
No 56
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=78.29 E-value=5.1 Score=30.18 Aligned_cols=29 Identities=14% Similarity=0.145 Sum_probs=22.5
Q ss_pred CcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 27 DMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 27 ~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
++++++.++| .+ ++ ||||||+.+.++-+.
T Consensus 13 ~l~~~e~p~P--~~-~~-~eVlVkV~a~gic~s 41 (410)
T cd08238 13 DLRLEKFELP--EI-AD-DEILVRVISDSLCFS 41 (410)
T ss_pred ceEEEecCCC--CC-CC-CeEEEEEEEeccCCC
Confidence 5888877765 33 55 899999999998664
No 57
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=78.11 E-value=4.5 Score=29.35 Aligned_cols=30 Identities=17% Similarity=0.094 Sum_probs=22.9
Q ss_pred CcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 27 DMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 27 ~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
.+++++.++| .+.++ ||+|||+.+.++.+.
T Consensus 11 ~~~~~~~~~P--~~~~~-~evlV~v~~~gi~~~ 40 (347)
T PRK10309 11 IVRVAESPIP--EIKHQ-DDVLVKVASSGLCGS 40 (347)
T ss_pred ceEEEECCCC--CCCCC-CEEEEEEEEEEEchh
Confidence 4788877775 23245 899999999999874
No 58
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=77.51 E-value=4.4 Score=28.40 Aligned_cols=30 Identities=10% Similarity=0.056 Sum_probs=23.2
Q ss_pred CCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 26 SDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 26 ~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
+.|++++.++| . +++ +|++||+++.++.+.
T Consensus 5 ~~~~~~~~~~~--~-l~~-~ev~v~v~~~~i~~~ 34 (312)
T cd08269 5 GRFEVEEHPRP--T-PGP-GQVLVRVEGCGVCGS 34 (312)
T ss_pred CeeEEEECCCC--C-CCC-CeEEEEEEEeeeccc
Confidence 56888777665 2 355 899999999999774
No 59
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=77.37 E-value=8.6 Score=27.53 Aligned_cols=32 Identities=13% Similarity=0.030 Sum_probs=24.7
Q ss_pred CCcEEEEeecccccCCCCCCeEEEEeEEEeeCcchh
Q 039200 26 SDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPYMR 61 (88)
Q Consensus 26 ~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy~R 61 (88)
..|++++.++| .+ ++ ++++||+.+.++.+.-.
T Consensus 12 ~~~~~~~~~~p--~~-~~-~~v~V~v~~~~l~~~d~ 43 (306)
T cd08258 12 GNVELREVPEP--EP-GP-GEVLIKVAAAGICGSDL 43 (306)
T ss_pred CceEEeecCCC--CC-CC-CeEEEEEEEEEechhhH
Confidence 55888777775 22 55 89999999999998644
No 60
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=77.08 E-value=4.8 Score=29.18 Aligned_cols=31 Identities=13% Similarity=0.090 Sum_probs=23.9
Q ss_pred CCcEEEEeecccccCCCCCCeEEEEeEEEeeCcch
Q 039200 26 SDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPYM 60 (88)
Q Consensus 26 ~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy~ 60 (88)
.++++++.+.| . +++ |+++||+++.++.+.-
T Consensus 10 ~~~~~~~~~~p--~-~~~-~~v~V~v~a~~i~~~d 40 (350)
T cd08256 10 QDYRLEEVPVP--R-PGP-GEILVKVEACGICAGD 40 (350)
T ss_pred CceEEEECCCC--C-CCC-CeEEEEEEEEEEcccc
Confidence 35888877665 2 355 8999999999998863
No 61
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=75.68 E-value=5.3 Score=28.73 Aligned_cols=31 Identities=6% Similarity=0.065 Sum_probs=23.7
Q ss_pred CcEEEEeecccccCCCCCCeEEEEeEEEeeCcch
Q 039200 27 DMKITSGSIKLKVADGSKDTVLLKNLYLSCGPYM 60 (88)
Q Consensus 27 ~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy~ 60 (88)
++++++.++| .+.++ +|++||+.+.++.+.-
T Consensus 11 ~~~~~~~~~p--~~~~~-~ev~V~v~~~~i~~~d 41 (345)
T cd08287 11 DIRVEEVPDP--VIEEP-TDAVIRVVATCVCGSD 41 (345)
T ss_pred ceeEEeCCCC--CCCCC-CeEEEEEeeeeecccc
Confidence 5788777765 33355 8999999999998853
No 62
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=75.66 E-value=8 Score=26.93 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=28.1
Q ss_pred eEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcch
Q 039200 11 KRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPYM 60 (88)
Q Consensus 11 ~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy~ 60 (88)
|.|++... | ..+.+++++.+.+ . +++ |+++||+.+.++++.-
T Consensus 2 ~a~~~~~~--~--~~~~~~~~~~~~~--~-~~~-~~v~v~v~~~~i~~~d 43 (326)
T cd08272 2 KALVLESF--G--GPEVFELREVPRP--Q-PGP-GQVLVRVHASGVNPLD 43 (326)
T ss_pred eEEEEccC--C--CchheEEeecCCC--C-CCC-CeEEEEEEEEecCHHH
Confidence 46666432 2 2345777766664 2 355 8999999999999863
No 63
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=75.48 E-value=9.8 Score=27.68 Aligned_cols=31 Identities=10% Similarity=0.014 Sum_probs=23.9
Q ss_pred CCcEEEEeecccccCCCCCCeEEEEeEEEeeCcch
Q 039200 26 SDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPYM 60 (88)
Q Consensus 26 ~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy~ 60 (88)
+.+++++.++| .+ ++ +|++||+.+.++.+.=
T Consensus 11 ~~l~~~~~~~p--~~-~~-~evlV~v~a~~l~~~d 41 (361)
T cd08231 11 KPLEIREVPLP--DL-EP-GAVLVRVRLAGVCGSD 41 (361)
T ss_pred CCCEEEeccCC--CC-CC-CeEEEEEEEEeecCcc
Confidence 46888877775 33 55 8999999999998753
No 64
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=75.25 E-value=20 Score=24.68 Aligned_cols=41 Identities=10% Similarity=0.115 Sum_probs=27.0
Q ss_pred eEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 11 KRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 11 ~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
|.|++.+.. ....+++++.+.+ . ..+ |+++||+++.++++.
T Consensus 2 ~~~~~~~~~----~~~~~~~~~~~~~--~-~~~-~~v~v~v~~~~i~~~ 42 (323)
T cd05276 2 KAIVIKEPG----GPEVLELGEVPKP--A-PGP-GEVLIRVAAAGVNRA 42 (323)
T ss_pred eEEEEecCC----CcccceEEecCCC--C-CCC-CEEEEEEEEeecCHH
Confidence 456665432 2355677665554 2 355 899999999999875
No 65
>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=74.99 E-value=9.4 Score=26.70 Aligned_cols=35 Identities=17% Similarity=0.156 Sum_probs=26.2
Q ss_pred CCcEEEEeecccccCCCCCCeEEEEeEEEeeCcchhhhc
Q 039200 26 SDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPYMRERM 64 (88)
Q Consensus 26 ~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy~R~~m 64 (88)
++|++.+.+.| .+ ++ ++++||+++.++++.-....
T Consensus 13 ~~~~~~~~~~~--~~-~~-~~v~v~v~~~~i~~~d~~~~ 47 (325)
T cd08271 13 LQLTLEEIEIP--GP-GA-GEVLVKVHAAGLNPVDWKVI 47 (325)
T ss_pred ceeEEeccCCC--CC-CC-CEEEEEEEEEecCHHHHHHh
Confidence 47888777665 22 55 89999999999998655443
No 66
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=74.77 E-value=9.4 Score=27.49 Aligned_cols=32 Identities=6% Similarity=-0.059 Sum_probs=23.7
Q ss_pred CcEEEEeecccccCCCCCCeEEEEeEEEeeCcchh
Q 039200 27 DMKITSGSIKLKVADGSKDTVLLKNLYLSCGPYMR 61 (88)
Q Consensus 27 ~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy~R 61 (88)
++++++.++| .+.++ +||+||+.+.++.+.-+
T Consensus 11 ~~~~~~~~~p--~~~~~-~ev~v~v~a~~i~~~d~ 42 (345)
T cd08286 11 KISWEDRPKP--TIQEP-TDAIVKMLKTTICGTDL 42 (345)
T ss_pred ceeEEecCCC--CCCCC-CeEEEEEEEeeecchhh
Confidence 4788777665 23355 89999999999987643
No 67
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=74.56 E-value=11 Score=27.51 Aligned_cols=39 Identities=10% Similarity=0.096 Sum_probs=27.3
Q ss_pred eEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 11 KRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 11 ~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
|.|++.+. | ..+++.+.+++ .+ ++ +||+||+.+.++.+.
T Consensus 2 ~a~~~~~~--~----~~~~~~~~~~~--~~-~~-~~v~v~v~~~~l~~~ 40 (367)
T cd08263 2 KAAVLKGP--N----PPLTIEEIPVP--RP-KE-GEILIRVAACGVCHS 40 (367)
T ss_pred eeEEEecC--C----CCcEEEEeeCC--CC-CC-CeEEEEEEEeeeCcc
Confidence 46777543 2 23677777665 23 55 899999999999884
No 68
>PRK10083 putative oxidoreductase; Provisional
Probab=73.74 E-value=11 Score=27.07 Aligned_cols=30 Identities=13% Similarity=0.065 Sum_probs=22.6
Q ss_pred CCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 26 SDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 26 ~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
..+++++.+.| .+ ++ +|++||+.+.++.+.
T Consensus 10 ~~~~~~~~~~p--~~-~~-~~vlV~v~~~gi~~~ 39 (339)
T PRK10083 10 NSLAIEERPIP--QP-AA-GEVRVKVKLAGICGS 39 (339)
T ss_pred CeeEEEeccCC--CC-CC-CeEEEEEEEEEEccc
Confidence 35788777665 33 55 899999999999764
No 69
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=73.37 E-value=12 Score=26.47 Aligned_cols=41 Identities=17% Similarity=0.138 Sum_probs=27.3
Q ss_pred eEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 11 KRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 11 ~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
|.+++.+... ...+++++.+.+ . ..+ |+++||+.+.++++.
T Consensus 3 ~a~~~~~~~~----~~~~~~~~~~~~--~-~~~-~~v~v~v~~~~i~~~ 43 (334)
T PTZ00354 3 RAVTLKGFGG----VDVLKIGESPKP--A-PKR-NDVLIKVSAAGVNRA 43 (334)
T ss_pred EEEEEEecCC----CcceEEEeCCCC--C-CCC-CEEEEEEEEEecCHH
Confidence 5666654321 245777665554 2 355 899999999999875
No 70
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=73.34 E-value=11 Score=26.66 Aligned_cols=41 Identities=10% Similarity=0.133 Sum_probs=27.8
Q ss_pred eEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 11 KRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 11 ~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
|.|++.+. |. .+-+++++.++| .+ ++ +|++||+.+.++++.
T Consensus 2 ~a~~~~~~--~~--~~~~~~~~~~~p--~~-~~-~ev~i~v~~~~i~~~ 42 (326)
T cd08289 2 QALVVEKD--ED--DVSVSVKNLTLD--DL-PE-GDVLIRVAYSSVNYK 42 (326)
T ss_pred eeEEEecc--CC--cceeEEEEccCC--CC-CC-CeEEEEEEEEecChH
Confidence 45666542 22 246778777665 23 55 899999999999863
No 71
>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1.1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....
Probab=73.32 E-value=6.7 Score=23.96 Aligned_cols=23 Identities=13% Similarity=-0.171 Sum_probs=17.9
Q ss_pred CCeEEEEeEEEeeCcchhhhccC
Q 039200 44 KDTVLLKNLYLSCGPYMRERMSK 66 (88)
Q Consensus 44 ~gevLvr~l~lSvDPy~R~~m~~ 66 (88)
+||||||+++.++.+.=....+.
T Consensus 1 P~eVlVkv~a~gic~~D~~~~~g 23 (109)
T PF08240_consen 1 PGEVLVKVRAAGICGSDLHIREG 23 (109)
T ss_dssp TTEEEEEEEEEEE-HHHHHHHTT
T ss_pred CCEEEEEEEEeeeCHHHHHHHhh
Confidence 38999999999999877666554
No 72
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=72.61 E-value=11 Score=28.07 Aligned_cols=31 Identities=3% Similarity=0.012 Sum_probs=23.0
Q ss_pred CCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 26 SDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 26 ~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
.++++.+.+.| .+.++ ++++||+++.++.+.
T Consensus 10 ~~~~~~~~~~p--~~~~~-~~v~i~v~~~~i~~~ 40 (386)
T cd08283 10 GDVRVEEVPDP--KIEDP-TDAIVRVTATAICGS 40 (386)
T ss_pred CCceEEeCCCC--CCCCC-CeEEEEEEEEecchh
Confidence 46788776664 23235 899999999999875
No 73
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=72.43 E-value=6.3 Score=28.79 Aligned_cols=28 Identities=21% Similarity=0.056 Sum_probs=21.9
Q ss_pred cEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 28 MKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 28 f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
+++++.+.| .+ ++ ||++||+.+.++.+.
T Consensus 11 ~~~~~~p~P--~~-~~-~evlVrv~~~gic~s 38 (349)
T TIGR03201 11 MVKTRVEIP--EL-GA-GDVVVKVAGCGVCHT 38 (349)
T ss_pred ceEEeccCC--CC-CC-CeEEEEEEEEeeccc
Confidence 788777665 33 66 899999999999764
No 74
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=71.50 E-value=5.3 Score=28.68 Aligned_cols=34 Identities=21% Similarity=0.136 Sum_probs=24.8
Q ss_pred CcEEEEeecccccCCCCCCeEEEEeEEEeeCcchhhh
Q 039200 27 DMKITSGSIKLKVADGSKDTVLLKNLYLSCGPYMRER 63 (88)
Q Consensus 27 ~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy~R~~ 63 (88)
.+++++.++| .|.++ |||+||+++.+++++-...
T Consensus 15 ~~~~~~~~~p--~~~~~-~ev~v~v~~~~i~~~d~~~ 48 (350)
T cd08248 15 LLLLENARIP--VIRKP-NQVLIKVHAASVNPIDVLM 48 (350)
T ss_pred eeeecccCCC--CCCCC-CeEEEEEEEEecCchhHHH
Confidence 4677776664 33235 8999999999999875543
No 75
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=71.48 E-value=7.5 Score=28.06 Aligned_cols=30 Identities=17% Similarity=0.098 Sum_probs=23.6
Q ss_pred CCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 26 SDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 26 ~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
+.|++++.++| .+ ++ ||++||+++.++.+.
T Consensus 10 ~~~~~~~~~~p--~~-~~-~evlirv~a~~i~~~ 39 (337)
T cd05283 10 GKLEPFTFERR--PL-GP-DDVDIKITYCGVCHS 39 (337)
T ss_pred CCceEEeccCC--CC-CC-CeEEEEEEEecccch
Confidence 56788888776 23 55 899999999999874
No 76
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=71.22 E-value=5 Score=29.09 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=24.9
Q ss_pred CCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcch
Q 039200 25 ESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPYM 60 (88)
Q Consensus 25 ~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy~ 60 (88)
..+|++++.+.| .+ ++ +|+++|+.+.++++.-
T Consensus 11 ~~~~~~~~~~~p--~~-~~-~ev~i~v~~~~i~~~d 42 (339)
T cd08249 11 GGLLVVVDVPVP--KP-GP-DEVLVKVKAVALNPVD 42 (339)
T ss_pred CCcccccCCCCC--CC-CC-CEEEEEEEEEEcCchh
Confidence 466888777665 33 66 8999999999999854
No 77
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=70.99 E-value=7.9 Score=27.95 Aligned_cols=29 Identities=21% Similarity=0.188 Sum_probs=22.6
Q ss_pred CcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 27 DMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 27 ~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
.|++.+.+.| .+ ++ +|++||+++.+++|.
T Consensus 12 ~~~~~~~~~~--~~-~~-~~v~V~v~~~~~~~~ 40 (341)
T cd05281 12 GAELVEVPVP--KP-GP-GEVLIKVLAASICGT 40 (341)
T ss_pred ceEEEeCCCC--CC-CC-CeEEEEEEEEEEccc
Confidence 5788777665 33 55 899999999999875
No 78
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=70.98 E-value=7.8 Score=27.73 Aligned_cols=29 Identities=10% Similarity=0.101 Sum_probs=22.2
Q ss_pred CcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 27 DMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 27 ~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
.|++++.+.+ .+ ++ |+++||..+.++++.
T Consensus 12 ~~~~~~~~~~--~~-~~-~~v~v~v~~~~i~~~ 40 (340)
T cd05284 12 PLRLEDVPVP--EP-GP-GQVLVRVGGAGVCHS 40 (340)
T ss_pred CceEEeCCCC--CC-CC-CeEEEEEEEEeecch
Confidence 4777766664 23 55 899999999999985
No 79
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=69.90 E-value=14 Score=26.39 Aligned_cols=30 Identities=10% Similarity=0.083 Sum_probs=22.8
Q ss_pred CcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 27 DMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 27 ~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
.+++++.++| .+.++ +||+||+.+.++++.
T Consensus 11 ~~~~~~~~~p--~~~~~-~~v~i~v~~~~i~~~ 40 (344)
T cd08284 11 DVRVEEVPIP--QIQDP-TDAIVKVTAAAICGS 40 (344)
T ss_pred CceEEeccCC--CCCCC-CeEEEEEEEeecccc
Confidence 5788777775 23235 899999999999874
No 80
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=68.90 E-value=33 Score=24.02 Aligned_cols=30 Identities=10% Similarity=0.046 Sum_probs=22.8
Q ss_pred CCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 26 SDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 26 ~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
.+|++++.+.+ .+ ++ ++++||+++.++++.
T Consensus 12 ~~~~~~~~~~~--~~-~~-~~v~i~v~~~~i~~~ 41 (337)
T cd08275 12 DKLKVEKEALP--EP-SS-GEVRVRVEACGLNFA 41 (337)
T ss_pred cceEEEecCCC--CC-CC-CEEEEEEEEEecCHH
Confidence 56888776664 23 55 899999999999765
No 81
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=68.51 E-value=17 Score=25.34 Aligned_cols=30 Identities=13% Similarity=0.042 Sum_probs=22.0
Q ss_pred CCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 26 SDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 26 ~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
..|++.+.+.+ . .++ +|++||+++.++++.
T Consensus 13 ~~~~~~~~~~~--~-~~~-~~v~v~v~~~~i~~~ 42 (320)
T cd08243 13 EVLKLREIPIP--E-PKP-GWVLIRVKAFGLNRS 42 (320)
T ss_pred cceEEeecCCC--C-CCC-CEEEEEEEEEecCHH
Confidence 46677655553 2 355 899999999999874
No 82
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=68.23 E-value=16 Score=26.14 Aligned_cols=39 Identities=13% Similarity=0.133 Sum_probs=26.5
Q ss_pred eEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcch
Q 039200 11 KRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPYM 60 (88)
Q Consensus 11 ~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy~ 60 (88)
|.|++.+ + ..+++.+.+++ .+ ++ +|++||+.+.++.|.-
T Consensus 2 ~a~~~~~-~------~~~~~~~~~~~--~~-~~-~~v~v~v~~~~l~~~d 40 (337)
T cd08261 2 KALVCEK-P------GRLEVVDIPEP--VP-GA-GEVLVRVKRVGICGSD 40 (337)
T ss_pred eEEEEeC-C------CceEEEECCCC--CC-CC-CeEEEEEEEEeEcccC
Confidence 5666643 2 24666666654 33 55 8999999999998853
No 83
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=68.07 E-value=11 Score=27.29 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=22.8
Q ss_pred CCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 26 SDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 26 ~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
+.|++++.+.+ .+ ++ +|++||+.+.++.|.
T Consensus 8 ~~~~~~~~~~~--~l-~~-~~vlV~v~~~~l~~~ 37 (343)
T cd05285 8 GDLRLEERPIP--EP-GP-GEVLVRVRAVGICGS 37 (343)
T ss_pred CceeEEECCCC--CC-CC-CeEEEEEEEeeEccc
Confidence 45777766664 23 55 899999999999885
No 84
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=67.78 E-value=9.2 Score=27.57 Aligned_cols=28 Identities=25% Similarity=0.220 Sum_probs=21.4
Q ss_pred cEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 28 MKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 28 f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
+++++.++| .+ ++ +|++||+.+.++.+.
T Consensus 11 ~~l~~~~~p--~~-~~-~ev~V~v~~~~~~~~ 38 (340)
T TIGR00692 11 AELTEVPVP--EP-GP-GEVLIKVLATSICGT 38 (340)
T ss_pred cEEEECCCC--CC-CC-CeEEEEEEEEEEccc
Confidence 677766665 33 55 899999999999764
No 85
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=67.64 E-value=24 Score=24.85 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=27.7
Q ss_pred eEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 11 KRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 11 ~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
|.+++.+ + +.| .+.+++.+.+.| .+ ++ +|++||+.+.++++.
T Consensus 2 ~a~~~~~-~-~~~-~~~~~~~~~~~p--~~-~~-~~v~i~v~~~~~~~~ 43 (324)
T cd08292 2 RAAVHTQ-F-GDP-ADVLEIGEVPKP--TP-GA-GEVLVRTTLSPIHNH 43 (324)
T ss_pred eeEEEcc-C-CCh-hHeEEEeecCCC--CC-CC-CeEEEEEEEccCCHH
Confidence 4566643 2 211 244778777665 23 55 899999999999875
No 86
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=67.55 E-value=11 Score=26.86 Aligned_cols=26 Identities=12% Similarity=0.104 Sum_probs=20.2
Q ss_pred EEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 30 ITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 30 l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
+++.++| . .++ ||++||.++.++.+.
T Consensus 15 ~~~~~~p--~-~~~-~evlv~v~~~~i~~~ 40 (338)
T PRK09422 15 VVEKTLR--P-LKH-GEALVKMEYCGVCHT 40 (338)
T ss_pred EEEecCC--C-CCC-CeEEEEEEEEeechh
Confidence 6666665 2 366 899999999999885
No 87
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=67.46 E-value=15 Score=25.31 Aligned_cols=35 Identities=14% Similarity=0.094 Sum_probs=24.7
Q ss_pred CCcEEEEeecccccCCCCCCeEEEEeEEEeeCcchhhhc
Q 039200 26 SDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPYMRERM 64 (88)
Q Consensus 26 ~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy~R~~m 64 (88)
+.+++++.+.+ . +++ |+++||..+.++++.-+...
T Consensus 13 ~~~~~~~~~~~--~-~~~-~~v~v~v~~~~i~~~d~~~~ 47 (309)
T cd05289 13 EVLELADVPTP--E-PGP-GEVLVKVHAAGVNPVDLKIR 47 (309)
T ss_pred cceeecccCCC--C-CCC-CeEEEEEEEeeCCHHHHHHh
Confidence 34566555553 2 356 89999999999998866554
No 88
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=66.36 E-value=19 Score=27.47 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=19.7
Q ss_pred cEEEEeecccccCCCCCCeEEEEeEEEee
Q 039200 28 MKITSGSIKLKVADGSKDTVLLKNLYLSC 56 (88)
Q Consensus 28 f~l~~~~~~~~~~~~~~gevLvr~l~lSv 56 (88)
+++.+.+.| .| ++ ||||||+.|.-+
T Consensus 16 l~i~e~~~p--~p-~~-~eVlI~v~~~GV 40 (339)
T COG1064 16 LEIEEVPVP--EP-GP-GEVLIKVEACGV 40 (339)
T ss_pred ceEEeccCC--CC-CC-CeEEEEEEEEee
Confidence 677777775 33 66 899999999986
No 89
>PLN02702 L-idonate 5-dehydrogenase
Probab=65.43 E-value=22 Score=25.99 Aligned_cols=30 Identities=13% Similarity=0.087 Sum_probs=22.1
Q ss_pred CCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 26 SDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 26 ~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
..+++++.+.| .+ ++ +|++||+.+.++.+.
T Consensus 27 ~~l~~~~~~~p--~~-~~-~ev~Ikv~~~~i~~~ 56 (364)
T PLN02702 27 NTLKIQPFKLP--PL-GP-HDVRVRMKAVGICGS 56 (364)
T ss_pred CceEEEeccCC--CC-CC-CeEEEEEEEEEEchh
Confidence 45677666654 23 55 899999999999874
No 90
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=64.99 E-value=20 Score=25.14 Aligned_cols=41 Identities=12% Similarity=0.063 Sum_probs=26.9
Q ss_pred eEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 11 KRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 11 ~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
|.|++.+. + ....|++.+.+.+ . .++ ++++||+.+.++++.
T Consensus 2 ~a~~~~~~--~--~~~~~~~~~~~~~--~-~~~-~~v~v~v~~~~i~~~ 42 (324)
T cd08244 2 RAIRLHEF--G--PPEVLVPEDVPDP--V-PGP-GQVRIAVAAAGVHFV 42 (324)
T ss_pred eEEEEcCC--C--CccceEEeccCCC--C-CCC-CEEEEEEEEEeCCHH
Confidence 45666332 2 2356777665554 2 255 899999999999885
No 91
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=64.98 E-value=19 Score=26.62 Aligned_cols=43 Identities=14% Similarity=-0.014 Sum_probs=26.4
Q ss_pred ceeeeEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 7 AVSNKRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 7 ~~~n~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
+++.++|.+.+.+ +.+++.+.+.| .+ ++ ||||||+.+.++.+.
T Consensus 10 ~~~~~~~~~~~~~------~~l~~~~~~~p--~~-~~-~eVlV~v~~~gic~s 52 (360)
T PLN02586 10 PQKAFGWAARDPS------GVLSPFHFSRR--EN-GD-EDVTVKILYCGVCHS 52 (360)
T ss_pred hhheeEEEecCCC------CCceEEeecCC--CC-CC-CeEEEEEEEecCChh
Confidence 4455555553332 33455544443 23 55 899999999999764
No 92
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=63.05 E-value=15 Score=27.19 Aligned_cols=30 Identities=0% Similarity=-0.070 Sum_probs=22.9
Q ss_pred CcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 27 DMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 27 ~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
.+++++.++| .+.++ +|++||+.+.++.+.
T Consensus 11 ~~~~~~~~~p--~~~~~-~evlv~v~a~~i~~~ 40 (375)
T cd08282 11 NVAVEDVPDP--KIEHP-TDAIVRITTTAICGS 40 (375)
T ss_pred ceeEEeCCCC--CCCCC-CeEEEEEEEEeeCHH
Confidence 5788777775 22245 799999999999875
No 93
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=62.83 E-value=15 Score=26.53 Aligned_cols=29 Identities=10% Similarity=0.158 Sum_probs=21.9
Q ss_pred CcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 27 DMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 27 ~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
++++++.++| .+ .+ ||++||+.+.++.+.
T Consensus 11 ~~~l~~~~~p--~~-~~-~evlIkv~a~~i~~~ 39 (351)
T cd08285 11 KVGWIEKPIP--VC-GP-NDAIVRPTAVAPCTS 39 (351)
T ss_pred ccEEEECCCC--CC-CC-CeEEEEEEEEEechh
Confidence 3567666664 23 55 899999999999885
No 94
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=62.83 E-value=25 Score=25.87 Aligned_cols=29 Identities=10% Similarity=0.024 Sum_probs=22.3
Q ss_pred CcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 27 DMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 27 ~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
.+++++.++| .+ ++ ++++||+...++.+.
T Consensus 12 ~~~~~~~~~p--~~-~~-~~vlv~v~~~~i~~~ 40 (365)
T cd05279 12 PLSIEEIEVA--PP-KA-GEVRIKVVATGVCHT 40 (365)
T ss_pred CcEEEEeecC--CC-CC-CeEEEEEEEeeecch
Confidence 3778777775 33 55 899999999999874
No 95
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=62.79 E-value=22 Score=26.84 Aligned_cols=39 Identities=8% Similarity=-0.047 Sum_probs=26.8
Q ss_pred CCcEEEEeecccccCC----CCCCeEEEEeEEEeeCcchhhhcc
Q 039200 26 SDMKITSGSIKLKVAD----GSKDTVLLKNLYLSCGPYMRERMS 65 (88)
Q Consensus 26 ~~f~l~~~~~~~~~~~----~~~gevLvr~l~lSvDPy~R~~m~ 65 (88)
.++++++.++|.+.+. ++ ||||||+.+.++.+.=....+
T Consensus 12 ~~~~~~e~~~P~~~~~~~~~~~-~eVlVkv~a~gIcgsD~~~~~ 54 (393)
T TIGR02819 12 GKVEVQDIDYPKLELPDGRKCE-HGVILKVVTTNICGSDQHMVR 54 (393)
T ss_pred CceeEEeccCCcccCCCccCCC-CeEEEEEEEeeecHHHHHHHC
Confidence 3588888777632100 14 799999999999988555443
No 96
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=62.25 E-value=25 Score=25.30 Aligned_cols=39 Identities=10% Similarity=0.026 Sum_probs=26.1
Q ss_pred eEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 11 KRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 11 ~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
|.|++.+ .|. .+++++.+.| .+ .+ ++++||+.+.++++.
T Consensus 2 ~a~~~~~--~~~----~~~~~~~~~~--~~-~~-~~v~v~v~~~~i~~~ 40 (345)
T cd08260 2 RAAVYEE--FGE----PLEIREVPDP--EP-PP-DGVVVEVEACGVCRS 40 (345)
T ss_pred eeEEEec--CCC----CcEEEEccCC--CC-CC-CeEEEEEEEeeccHH
Confidence 5677642 221 2677666654 23 55 899999999999974
No 97
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=61.74 E-value=14 Score=26.78 Aligned_cols=33 Identities=15% Similarity=0.115 Sum_probs=22.0
Q ss_pred EEEEeecccccCCCCCCeEEEEeEEEeeCcchhh
Q 039200 29 KITSGSIKLKVADGSKDTVLLKNLYLSCGPYMRE 62 (88)
Q Consensus 29 ~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy~R~ 62 (88)
++++.+++.+.++++ ++++||.++.++++.-..
T Consensus 14 ~~~~~~~~~p~~~~~-~~v~I~v~~~~~~~~d~~ 46 (352)
T cd08247 14 TITTIKLPLPNCYKD-NEIVVKVHAAALNPVDLK 46 (352)
T ss_pred eeeccCCCCCCCCCC-CeEEEEEEEEecChHhHH
Confidence 455555543221366 899999999999886443
No 98
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=60.31 E-value=17 Score=25.80 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=22.5
Q ss_pred CCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 26 SDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 26 ~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
+.|++++.+.+ ++++ +|++||+++.++++.
T Consensus 12 ~~~~~~~~~~~---~~~~-~ev~v~v~~~~i~~~ 41 (325)
T cd08264 12 ENLKVEDVKDP---KPGP-GEVLIRVKMAGVNPV 41 (325)
T ss_pred CceEEEeccCC---CCCC-CeEEEEEEEEEechH
Confidence 55777666554 2366 899999999999874
No 99
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=59.10 E-value=17 Score=26.84 Aligned_cols=29 Identities=14% Similarity=0.171 Sum_probs=21.9
Q ss_pred CcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 27 DMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 27 ~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
.+++++.+.| .+ ++ ||||||+.+.++.+.
T Consensus 13 ~l~~~~~~~P--~~-~~-~eVlI~v~a~gi~~s 41 (368)
T TIGR02818 13 PLKIEEVDVE--MP-QK-GEVLVRIVATGVCHT 41 (368)
T ss_pred CeEEEEecCC--CC-CC-CeEEEEEEEecccHH
Confidence 4677766665 33 55 899999999998775
No 100
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=57.38 E-value=20 Score=26.62 Aligned_cols=29 Identities=7% Similarity=0.119 Sum_probs=22.6
Q ss_pred CcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 27 DMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 27 ~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
+|++++.+.| .+ ++ ++++||..+.++.+.
T Consensus 38 ~~~~~~~~~p--~~-~~-~ev~V~v~a~gi~~~ 66 (384)
T cd08265 38 ELRVEDVPVP--NL-KP-DEILIRVKACGICGS 66 (384)
T ss_pred CEEEEECCCC--CC-CC-CEEEEEEEEEEEcHh
Confidence 4888777775 23 55 899999999999763
No 101
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=56.62 E-value=19 Score=25.56 Aligned_cols=29 Identities=14% Similarity=0.063 Sum_probs=22.8
Q ss_pred CcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 27 DMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 27 ~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
.+++++.+.| .+ .+ ++++||+.+.++++.
T Consensus 11 ~~~~~~~~~~--~~-~~-~~v~v~v~~~~i~~~ 39 (330)
T cd08245 11 PLEPEEVPVP--EP-GP-GEVLIKIEACGVCHT 39 (330)
T ss_pred CceEEeccCC--CC-CC-CeEEEEEEEEeccHH
Confidence 5888777775 22 55 899999999999884
No 102
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=56.33 E-value=21 Score=25.65 Aligned_cols=29 Identities=14% Similarity=0.192 Sum_probs=22.2
Q ss_pred CcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 27 DMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 27 ~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
++++++.+.| . .++ ||++||+.+.++.+.
T Consensus 12 ~~~~~~~~~p--~-~~~-~~v~v~v~~~~i~~~ 40 (333)
T cd08296 12 PLELVERDVP--L-PGP-GEVLIKVEACGVCHS 40 (333)
T ss_pred CceEEeccCC--C-CCC-CEEEEEEEEEecchH
Confidence 4778766665 2 255 899999999999875
No 103
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=55.85 E-value=39 Score=23.31 Aligned_cols=30 Identities=13% Similarity=0.234 Sum_probs=22.0
Q ss_pred CCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 26 SDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 26 ~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
..|++.+.+.+ . ..+ +++++|..+.++++.
T Consensus 13 ~~~~~~~~~~~--~-l~~-~~v~i~v~~~~i~~~ 42 (325)
T cd08253 13 DVLRLGDLPVP--T-PGP-GEVLVRVHASGVNPV 42 (325)
T ss_pred ccceeeecCCC--C-CCC-CEEEEEEEEEecChh
Confidence 45777655554 2 355 899999999999884
No 104
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=55.19 E-value=25 Score=25.76 Aligned_cols=28 Identities=14% Similarity=0.134 Sum_probs=21.7
Q ss_pred cEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 28 MKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 28 f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
+++++.++| .+ ++ ++++||+++.++++.
T Consensus 13 ~~~~~~~~p--~~-~~-~~v~i~v~~~~i~~~ 40 (363)
T cd08279 13 LEIEEVELD--DP-GP-GEVLVRIAAAGLCHS 40 (363)
T ss_pred ceEEEeeCC--CC-CC-CeEEEEEEEeecCcH
Confidence 667666665 23 55 899999999999885
No 105
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=53.84 E-value=23 Score=24.78 Aligned_cols=30 Identities=13% Similarity=0.056 Sum_probs=22.1
Q ss_pred CCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 26 SDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 26 ~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
.++++.+.+.+ . ..+ ++++||+++.++.+.
T Consensus 13 ~~~~~~~~~~~--~-~~~-~~v~v~v~~~~i~~~ 42 (342)
T cd08266 13 EVLEYGDLPEP--E-PGP-DEVLVRVKAAALNHL 42 (342)
T ss_pred cceeEeecCCC--C-CCC-CeEEEEEEeeecCHH
Confidence 56777666554 2 255 899999999999863
No 106
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=53.04 E-value=43 Score=25.04 Aligned_cols=29 Identities=17% Similarity=0.076 Sum_probs=20.2
Q ss_pred CcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 27 DMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 27 ~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
.+++.+.+.| .+ ++ ||||||+.+.++.+.
T Consensus 18 ~l~~~~~~~p--~~-~~-~eVlVkV~a~gic~s 46 (375)
T PLN02178 18 VLSPFHFSRR--EN-GE-NDVTVKILFCGVCHS 46 (375)
T ss_pred CceEEeecCC--CC-CC-CeEEEEEEEEcCchH
Confidence 4555554443 23 66 899999999998664
No 107
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=46.57 E-value=47 Score=23.41 Aligned_cols=29 Identities=14% Similarity=0.061 Sum_probs=20.9
Q ss_pred cEEEEeecccccCCCCCCeEEEEeEEEeeCcch
Q 039200 28 MKITSGSIKLKVADGSKDTVLLKNLYLSCGPYM 60 (88)
Q Consensus 28 f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy~ 60 (88)
|++.+.+.| . .++ ++++||..+.++++.-
T Consensus 14 ~~~~~~~~~--~-~~~-~~v~i~v~~~~~~~~d 42 (338)
T cd08254 14 LVLEEVPVP--E-PGP-GEVLVKVKAAGVCHSD 42 (338)
T ss_pred eEEeccCCC--C-CCC-CeEEEEEEEEeeccHh
Confidence 566555443 2 355 8999999999999863
No 108
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=46.30 E-value=37 Score=26.35 Aligned_cols=34 Identities=9% Similarity=0.060 Sum_probs=24.6
Q ss_pred CCcEEEEeecccccCCCCCCeEEEEeEEEee---Ccchhhh
Q 039200 26 SDMKITSGSIKLKVADGSKDTVLLKNLYLSC---GPYMRER 63 (88)
Q Consensus 26 ~~f~l~~~~~~~~~~~~~~gevLvr~l~lSv---DPy~R~~ 63 (88)
.-|+++|..++ .| +. ||||||...--+ |.|.|.-
T Consensus 13 ~Pl~i~ei~l~--~P-~~-gEVlVri~AtGVCHTD~~~~~G 49 (366)
T COG1062 13 KPLEIEEVDLD--PP-RA-GEVLVRITATGVCHTDAHTLSG 49 (366)
T ss_pred CCeEEEEEecC--CC-CC-CeEEEEEEEeeccccchhhhcC
Confidence 45889888775 33 55 899999987655 6666653
No 109
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=41.72 E-value=1.2e+02 Score=20.98 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=21.4
Q ss_pred CCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 26 SDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 26 ~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
..+++.+.+.+ . .++ ++++||+.+.+++..
T Consensus 13 ~~~~~~~~~~~--~-~~~-~~v~i~v~~~~~~~~ 42 (328)
T cd08268 13 EVLRIEELPVP--A-PGA-GEVLIRVEAIGLNRA 42 (328)
T ss_pred ceeEEeecCCC--C-CCC-CeEEEEEEEEecChH
Confidence 45666655554 2 255 899999999999863
No 110
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=41.18 E-value=87 Score=21.50 Aligned_cols=30 Identities=7% Similarity=-0.031 Sum_probs=20.9
Q ss_pred CCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 26 SDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 26 ~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
.+|++.+.+ + .+..+ +++++|.++.++.+.
T Consensus 13 ~~~~~~~~~-~--~~~~~-~~v~i~v~~~~i~~~ 42 (323)
T cd08241 13 EDLVLEEVP-P--EPGAP-GEVRIRVEAAGVNFP 42 (323)
T ss_pred ceeEEecCC-C--CCCCC-CeEEEEEEEEecCHH
Confidence 457776655 4 23234 799999999999654
No 111
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=40.26 E-value=62 Score=24.45 Aligned_cols=47 Identities=19% Similarity=0.107 Sum_probs=28.6
Q ss_pred eeeEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcchhh
Q 039200 9 SNKRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPYMRE 62 (88)
Q Consensus 9 ~n~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy~R~ 62 (88)
.++++.+.+.+.+. +.-..++.++| .| .+ +++++|+....++|.=.-
T Consensus 4 ~~~~~~~~~~~~~~---~~~~~~~~~iP--~~-~~-~~~~i~~~a~a~NpiD~~ 50 (347)
T KOG1198|consen 4 KIRRVSLVSPPGGG---EVLFSEEVPIP--EP-ED-GEVLIKVVAVALNPIDLK 50 (347)
T ss_pred ccceEEEeccCCCc---ceEEeecccCC--CC-CC-CceEEEEEEeccChHHHH
Confidence 35666666665542 22233344554 33 44 799999999999775433
No 112
>KOG3451 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.22 E-value=18 Score=21.59 Aligned_cols=15 Identities=13% Similarity=0.603 Sum_probs=11.8
Q ss_pred EEEeeCcchhhhccC
Q 039200 52 LYLSCGPYMRERMSK 66 (88)
Q Consensus 52 l~lSvDPy~R~~m~~ 66 (88)
++++|||.+|..+-.
T Consensus 8 vlV~cDp~~kqliln 22 (71)
T KOG3451|consen 8 VLVTCDPAFKQLILN 22 (71)
T ss_pred eEEecChhHHHHhhh
Confidence 466799999988743
No 113
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=34.38 E-value=67 Score=21.98 Aligned_cols=30 Identities=13% Similarity=0.204 Sum_probs=21.3
Q ss_pred CCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 26 SDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 26 ~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
..|++.+.+.+ ..++ |++++|+++.+++..
T Consensus 12 ~~~~~~~~~~~---~~~~-~~v~i~v~~~~i~~~ 41 (320)
T cd05286 12 EVLEYEDVPVP---EPGP-GEVLVRNTAIGVNFI 41 (320)
T ss_pred cceEEeecCCC---CCCC-CEEEEEEEEeecCHH
Confidence 45666655543 2355 899999999998764
No 114
>PF04648 MF_alpha: Yeast mating factor alpha hormone; InterPro: IPR006742 This repeated sequence,WHWLQLKPGQPMY, characterises the mating factor alpha-1 or alpha-1 mating pheromone [contains: Mating factor alpha].The hormone is excreted into the culture medium by haploid cells of the alpha mating type and acts on cells of the opposite mating type (type A) by binding to a cognate G-protein coupled receptor which is coupled to a downstream signal transduction pathway. It inhibits DNA synthesis in type A cells synchronising them with type alpha, and so mediates the conjugation process.; GO: 0000772 mating pheromone activity, 0019953 sexual reproduction, 0005576 extracellular region
Probab=32.91 E-value=18 Score=14.77 Aligned_cols=6 Identities=33% Similarity=0.800 Sum_probs=2.7
Q ss_pred EEeeCc
Q 039200 53 YLSCGP 58 (88)
Q Consensus 53 ~lSvDP 58 (88)
|||+||
T Consensus 3 WL~~~~ 8 (13)
T PF04648_consen 3 WLRLSP 8 (13)
T ss_pred ceeccC
Confidence 444444
No 115
>PF10736 DUF2527: Protein of unknown function (DUF2627) ; InterPro: IPR019672 This entry represents small proteins with unknown function and appear to be restricted to a family of Enterobacterial proteins. It has a highly conserved sequence. Some proteins are annotated as YobF and may be involved in stress responses in E. coli.
Probab=31.46 E-value=22 Score=18.54 Aligned_cols=15 Identities=27% Similarity=0.490 Sum_probs=11.6
Q ss_pred EEEeeCcchhhhccC
Q 039200 52 LYLSCGPYMRERMSK 66 (88)
Q Consensus 52 l~lSvDPy~R~~m~~ 66 (88)
-++|-|||++.-.+.
T Consensus 18 y~FsAdpy~~AS~SN 32 (38)
T PF10736_consen 18 YHFSADPYLSASSSN 32 (38)
T ss_pred EEEecCceeeccccc
Confidence 468999999986543
No 116
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=30.55 E-value=1e+02 Score=21.21 Aligned_cols=30 Identities=7% Similarity=0.036 Sum_probs=21.4
Q ss_pred CCcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 26 SDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 26 ~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
..|++.+.+.+ +.++ +++++|+++.++++.
T Consensus 13 ~~~~~~~~~~~---~l~~-~~v~i~v~~~~~~~~ 42 (325)
T TIGR02824 13 EVLVLVEVPLP---VPKA-GEVLIRVAAAGVNRP 42 (325)
T ss_pred ccceEEeCCCC---CCCC-CEEEEEEEEEecCHH
Confidence 55666555443 2355 899999999999864
No 117
>COG3085 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.62 E-value=15 Score=23.54 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=21.2
Q ss_pred eeeeEEEEccCCCCCCCCCCcEEEEeec
Q 039200 8 VSNKRVILSNYVTGFPNESDMKITSGSI 35 (88)
Q Consensus 8 ~~n~~vvl~~~P~g~p~~~~f~l~~~~~ 35 (88)
++||-.==+++|.|+-...||+|.|.++
T Consensus 7 ~t~RfFD~K~yPRGFsrhGDfTikE~q~ 34 (112)
T COG3085 7 TTNRFFDNKHYPRGFSRHGDFTIKEAQL 34 (112)
T ss_pred hhhhccccCcCCCcccccCCeehhHHHH
Confidence 3444334477999999999999998876
No 118
>PF06331 Tbf5: Transcription factor TFIIH complex subunit Tfb5; InterPro: IPR009400 This entry represents nucleotide excision repair (NER) proteins, such as TTDA subunit of TFIIH basal transcription factor complex (also known as subunit 5 of RNA polymerase II transcription factor B), and Rex1. These proteins have a structural motif consisting of a 2-layer sandwich structure with an alpha/beta plait topology. Nucleotide excision repair is a major pathway for repairing UV light-induced DNA damage in most organisms. Transcription/repair factor IIH (TFIIH) is essential for RNA polymerase II transcription and nucleotide excision repair. The TFIIH complex consists of ten subunits: ERCC2, ERCC3, GTF2H1, GTF2H2, GTF2H3, GTF2H4, GTF2H5, MNAT1, CDK7 and CCNH. Defects in GTF2H5 cause the disease trichothiodystrophy (TTD), therefore GTF2H5 (general transcription factor 2H subunit 5) is also known as the TTD group A (TTDA) subunit (and as Tfb5) []. The TTDA subunit is responsible for the DNA repair function of the complex. TTDA is present both bound to TFIIH, and as a free fraction that shuffles between the cytoplasm and nucleus; induction of NER-type DNA lesions shifts the balance towards TTDA's more stable association with TFIIH []. TTDA is also required for the stability of the TFIIH complex and for the presence of normal levels of TFIIH in the cell. REX1 (required for excision 1) is required for DNA repair in the single-celled, photosynthetic algae Chlamydomonas reinhardtii [], and has homologues in other eukaryotes.; GO: 0003677 DNA binding, 0006289 nucleotide-excision repair; PDB: 2JNJ_B 1YDL_A 3DGP_B 3DOM_B.
Probab=29.60 E-value=37 Score=19.97 Aligned_cols=16 Identities=19% Similarity=0.696 Sum_probs=11.6
Q ss_pred EEeEEEeeCcchhhhc
Q 039200 49 LKNLYLSCGPYMRERM 64 (88)
Q Consensus 49 vr~l~lSvDPy~R~~m 64 (88)
+|-.+++|||.++-.+
T Consensus 5 ~kGvLv~CDpa~Kq~i 20 (68)
T PF06331_consen 5 IKGVLVECDPAIKQFI 20 (68)
T ss_dssp EEEEEEES-HHHHHHH
T ss_pred eeeEEEEcCHHHHHHH
Confidence 5666778999998765
No 119
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.24 E-value=1.1e+02 Score=23.74 Aligned_cols=29 Identities=14% Similarity=0.026 Sum_probs=20.9
Q ss_pred CcEEEEeecccccCCCCCCeEEEEeEEEeeCcc
Q 039200 27 DMKITSGSIKLKVADGSKDTVLLKNLYLSCGPY 59 (88)
Q Consensus 27 ~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy 59 (88)
-|.++|..++ .| +. .||.+|++|-|+=.+
T Consensus 19 PL~IEei~V~--pP-ka-~EVRIKI~~t~vCHT 47 (375)
T KOG0022|consen 19 PLVIEEIEVA--PP-KA-HEVRIKILATGVCHT 47 (375)
T ss_pred CeeEEEEEeC--CC-CC-ceEEEEEEEEeeccc
Confidence 4677777775 23 44 799999999998433
No 120
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=28.03 E-value=55 Score=24.84 Aligned_cols=48 Identities=15% Similarity=0.284 Sum_probs=31.0
Q ss_pred eeeEEEEccCCCCCCCCCCcEEEEeecccccCCCCCCeEEEEeEEEee---Ccchhhhc
Q 039200 9 SNKRVILSNYVTGFPNESDMKITSGSIKLKVADGSKDTVLLKNLYLSC---GPYMRERM 64 (88)
Q Consensus 9 ~n~~vvl~~~P~g~p~~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSv---DPy~R~~m 64 (88)
.+|-+++.+. .| .+-.++++.+++ .| .+ ||+++||.|..+ |-|.|--+
T Consensus 8 ~~k~i~v~e~-Gg---ydvlk~ed~pv~--~p-ap-gel~iknka~GlNfid~y~RkGl 58 (336)
T KOG1197|consen 8 LLKCIVVTEF-GG---YDVLKLEDRPVP--PP-AP-GELTIKNKACGLNFIDLYFRKGL 58 (336)
T ss_pred hheEEEEecc-CC---cceEEEeeecCC--CC-CC-CceEEeehhcCccHHHHHHhccc
Confidence 4555554332 22 356788888886 23 44 899999999885 56666543
No 121
>PF03345 DDOST_48kD: Oligosaccharyltransferase 48 kDa subunit beta; InterPro: IPR005013 During N-linked glycosylation of proteins, oligosaccharide chains are assembled on the carrier molecule dolichyl pyrophosphate in the following order: 2 molecules of N-acetylglucosamine (GlcNAc), 9 molecules of mannose, and 3 molecules of glucose. These 14-residue oligosaccharide cores are then transferred to asparagine residues on nascent polypeptide chains in the endoplasmic reticulum (ER). As proteins progress through the Golgi apparatus, the oligosaccharide cores are modified by trimming and extension to generate a diverse array of glycosylated proteins [, ]. The oligosaccharyl transferase complex (OST complex) 2.4.1.119 from EC transfers 14-sugar branched oligosaccharides from dolichyl pyrophosphate to asparagine residues []. The complex contains nine protein subunits: Ost1p, Ost2p, Ost3p, Ost4p, Ost5p, Ost6p, Stt3p, Swp1p, and Wbp1p, all of which are integral membrane proteins of the ER. The OST complex interacts with the Sec61p pore complex [] involved in protein import into the ER. This entry represents subunits OST3 and OST6. OST3 is homologous to OST6 [], and several lines of evidence indicate that they are alternative members of the OST complex. Disruption of both OST3 and OST6 causes severe underglycosylation of soluble and membrane-bound glycoproteins and a defect in the assembly of the complex. Hence, the function of these genes seems to be essential for recruiting a fully active complex necessary for efficient N-glycosylation []. This entry also includes the magnesium transporter protein 1, also known as OST3 homologue B, which might be involved in N-glycosylation through its association with the oligosaccharyl transferase (OST) complex. Wbp1p is the beta subunit of the OST complex, one of the original six subunits purified []. Wbp1 is essential [, ], but conditional mutants have decreased transferase activity [, ]. Wbp1p is homologous to mammalian OST48 [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane
Probab=27.76 E-value=34 Score=26.88 Aligned_cols=33 Identities=21% Similarity=0.473 Sum_probs=22.1
Q ss_pred CeEEEEeEEEeeCcchhhhccC----CCCCCccCCCCCC
Q 039200 45 DTVLLKNLYLSCGPYMRERMSK----LDRPSFVDSFHPG 79 (88)
Q Consensus 45 gevLvr~l~lSvDPy~R~~m~~----~~~~~Y~~p~~~G 79 (88)
++|-++ |.-+|||.|.-|.. .+...|...|++=
T Consensus 305 dDiQlE--f~mLDPy~R~~L~~~~~~~~~~~Y~~~FklP 341 (423)
T PF03345_consen 305 DDIQLE--FVMLDPYVRLTLKPSYSTDDNGTYSTTFKLP 341 (423)
T ss_pred CcEEEE--EEEcCcEEEcccccccccCCCCEEEEEEECC
Confidence 355554 99999999999986 2233465555543
No 122
>KOG2754 consensus Oligosaccharyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=25.94 E-value=43 Score=26.40 Aligned_cols=32 Identities=13% Similarity=0.321 Sum_probs=22.6
Q ss_pred EEeEEEeeCcchhhhccCCCCCCccCCCCCCC
Q 039200 49 LKNLYLSCGPYMRERMSKLDRPSFVDSFHPGG 80 (88)
Q Consensus 49 vr~l~lSvDPy~R~~m~~~~~~~Y~~p~~~G~ 80 (88)
|+..+.-+|||.|..++......|...|++=|
T Consensus 332 vQlEfv~iDPyvR~tL~~~~~g~~~~~FklPD 363 (443)
T KOG2754|consen 332 VQLEFVRIDPYVRTTLKPSGQGYYSAEFKLPD 363 (443)
T ss_pred eEEEEEEeCchheeEEecCCCceEEEEEecCC
Confidence 45559999999999998754344655565544
No 123
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=25.82 E-value=39 Score=25.39 Aligned_cols=14 Identities=36% Similarity=0.778 Sum_probs=10.4
Q ss_pred EeEEEeeCcchhhh
Q 039200 50 KNLYLSCGPYMRER 63 (88)
Q Consensus 50 r~l~lSvDPy~R~~ 63 (88)
|.+|+||||..-.|
T Consensus 304 ~ivYvSCnP~tlaR 317 (352)
T PF05958_consen 304 RIVYVSCNPATLAR 317 (352)
T ss_dssp EEEEEES-HHHHHH
T ss_pred eEEEEECCHHHHHH
Confidence 78999999976554
No 124
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=24.75 E-value=53 Score=22.00 Aligned_cols=11 Identities=18% Similarity=0.519 Sum_probs=9.9
Q ss_pred EEeEEEeeCcc
Q 039200 49 LKNLYLSCGPY 59 (88)
Q Consensus 49 vr~l~lSvDPy 59 (88)
|+.+++|+||.
T Consensus 89 v~~v~ISvDP~ 99 (174)
T PF02630_consen 89 VQFVFISVDPE 99 (174)
T ss_dssp EEEEEEESSTT
T ss_pred eEEEEEEeCCC
Confidence 78999999996
No 125
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=24.69 E-value=57 Score=22.76 Aligned_cols=14 Identities=7% Similarity=0.223 Sum_probs=12.1
Q ss_pred eEEEEeEEEeeCcc
Q 039200 46 TVLLKNLYLSCGPY 59 (88)
Q Consensus 46 evLvr~l~lSvDPy 59 (88)
..-|+.+++|+||.
T Consensus 102 ~~~v~vv~itvDPe 115 (207)
T COG1999 102 GDDVQVVFITVDPE 115 (207)
T ss_pred CCCEEEEEEEECCC
Confidence 56689999999996
No 126
>PF09493 DUF2389: Tryptophan-rich protein (DUF2389); InterPro: IPR012663 Members of this family are small hypothetical proteins of 60 to 100 residues from Cyanobacteria and some Proteobacteria. Prochlorococcus marinus strains have two members, other species one only. Interestingly, of the eight most conserved residues, four are aromatic and three are invariant tryptophans. It appears all species that encode this protein can synthesize tryptophan de novo.
Probab=24.04 E-value=1.2e+02 Score=17.18 Aligned_cols=33 Identities=15% Similarity=0.091 Sum_probs=25.2
Q ss_pred CCCcEEEEeecccccCCCCCCeEEEEeEEEeeCcchhhhcc
Q 039200 25 ESDMKITSGSIKLKVADGSKDTVLLKNLYLSCGPYMRERMS 65 (88)
Q Consensus 25 ~~~f~l~~~~~~~~~~~~~~gevLvr~l~lSvDPy~R~~m~ 65 (88)
.-||.+.+...+ + ++..+. +.-.||+..|.+++
T Consensus 13 ~rHF~V~~~~~~-----~--~~~~v~-~~~av~~~~~~~i~ 45 (60)
T PF09493_consen 13 ERHFLVTNVEGD-----E--DGRVVE-LVEAVDSKRRFWIN 45 (60)
T ss_pred cEEEEEEEEeec-----C--CCeEEE-eEeeeccCcEEEEe
Confidence 479999877653 3 356677 88899999999886
No 127
>PF11826 DUF3346: Protein of unknown function (DUF3346); InterPro: IPR021781 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 231 to 659 amino acids in length.
Probab=22.99 E-value=54 Score=23.48 Aligned_cols=45 Identities=20% Similarity=0.375 Sum_probs=28.0
Q ss_pred eEEEEccCCCCCCCCCCcEEEEeecccc--cC-CCCCCeEEEE-eEEEee
Q 039200 11 KRVILSNYVTGFPNESDMKITSGSIKLK--VA-DGSKDTVLLK-NLYLSC 56 (88)
Q Consensus 11 ~~vvl~~~P~g~p~~~~f~l~~~~~~~~--~~-~~~~gevLvr-~l~lSv 56 (88)
-+|+--+.|.| .+.++|++.-.++... +| .|+.||+-+| |||+-+
T Consensus 11 grwlseNMPeG-FksdrFrfiartiTaSeeAP~eg~dgEi~ikPnLYilv 59 (225)
T PF11826_consen 11 GRWLSENMPEG-FKSDRFRFIARTITASEEAPKEGEDGEIRIKPNLYILV 59 (225)
T ss_pred hhhhhhcCCCc-ccccchhhhhhhhhccccCCcCCCCCceEecccEEEEE
Confidence 46888889999 5778887655544321 23 2333788877 566543
Done!