BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039201
(258 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 116/275 (42%), Gaps = 57/275 (20%)
Query: 34 LLAIKSQLQDPLGPTSSWKASLNLCQ--WTGVTCSH--RHPRVTKLDLRSKSIGGFLSPF 89
LL IK L +P SSW + + C W GV C + RV LDL ++ P+
Sbjct: 11 LLQIKKDLGNPTT-LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLP---KPY 66
Query: 90 -----VGNPSFVRVIVLAN-NSYYGEIPNEVGCLSRLETL-IGGYRLGGKIPESLGQLGS 142
+ N ++ + + N+ G IP + L++L L I + G IP+ L Q+ +
Sbjct: 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 143 INYLILAENNFSGTL----RSIFNISSLEFQSSETEK------------------SKNRF 180
+ L + N SGTL S+ N+ + F + S+NR
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 181 TGKLGIDFNSLINLARLNL------GQKNLGIGTTSDLDFITLLRNCSKLK--------- 225
TGK+ F +L NLA ++L G ++ G+ + I L +N
Sbjct: 187 TGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKN 245
Query: 226 ----TLQYNQLTGTIPDTTGELRNLQAPDLSENNL 256
L+ N++ GT+P +L+ L + ++S NNL
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 75 LDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETL-IGGYRLGGKI 133
LD+ + G++ +G+ ++ ++ L +N G IP+EVG L L L + +L G+I
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 134 PESLGQLGSINYLILAENNFSGTLRSI 160
P+++ L + + L+ NN SG + +
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGPIPEM 723
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 79/201 (39%), Gaps = 42/201 (20%)
Query: 99 IVLANNSYYGEIPNEVGCLSRLETL-IGGYRLGGKIPESLGQLGSINYLILAENNFSGTL 157
I L+NN GEIP +G L L L + G IP LG S+ +L L N F+GT+
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554
Query: 158 -RSIFNISS------------------------------LEFQSSETEKSKNRFTGKLGI 186
++F S LEFQ +E+ NR + +
Sbjct: 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ-LNRLSTRNPC 613
Query: 187 DFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSK---------LKTLQYNQLTGTIP 237
+ S + + N G D+ + L K + L +N ++G+IP
Sbjct: 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673
Query: 238 DTTGELRNLQAPDLSENNLNA 258
D G+LR L DLS N L+
Sbjct: 674 DEVGDLRGLNILDLSSNKLDG 694
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 79/181 (43%), Gaps = 36/181 (19%)
Query: 72 VTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSR-LETLIGGY-RL 129
+T LDL G + PF G+ S + + L++N++ GE+P + R L+ L +
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355
Query: 130 GGKIPESLGQL-GSINYLILAENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDF 188
G++PESL L S+ L L+ NNFSG + + + E N FTGK+
Sbjct: 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNL-CQNPKNTLQELYLQNNGFTGKIP--- 411
Query: 189 NSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTLQ--YNQLTGTIPDTTGELRNL 246
L NCS+L +L +N L+GTIP + G L L
Sbjct: 412 ---------------------------PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 444
Query: 247 Q 247
+
Sbjct: 445 R 445
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 17/177 (9%)
Query: 88 PFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETL-IGGYRLGGKIPESLGQLGSINYL 146
PF+G+ S ++ + ++ N G+ + + L+ L I + G IP L S+ YL
Sbjct: 217 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYL 274
Query: 147 ILAENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGI 206
LAEN F+G + +S + + S N F G + F S L L L N
Sbjct: 275 SLAENKFTGEIPDF--LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF-- 330
Query: 207 GTTSDLDFITLLR-NCSKLKTLQYNQLTGTIPDTTGELRNLQAP----DLSENNLNA 258
+ +L TLL+ K+ L +N+ +G +P++ L NL A DLS NN +
Sbjct: 331 --SGELPMDTLLKMRGLKVLDLSFNEFSGELPES---LTNLSASLLTLDLSSNNFSG 382
Score = 34.7 bits (78), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 108/274 (39%), Gaps = 62/274 (22%)
Query: 33 HLLAIKSQLQDP-LGPTSSWKASLNLCQWTGVTCSHRHPRVTKLDLRSKS---------- 81
L++ K L D L P W ++ N C + GVTC R +VT +DL SK
Sbjct: 16 QLISFKDVLPDKNLLP--DWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGFSAVSS 71
Query: 82 -----------------IGGFLSPFVGNPSFVRVIVLANNSYYGEIP--NEVGCLSRLET 122
I G +S F + S + L+ NS G + +G S L+
Sbjct: 72 SLLSLTGLESLFLSNSHINGSVSGFKCSASLTS-LDLSRNSLSGPVTTLTSLGSCSGLKF 130
Query: 123 L---IGGYRLGGKIPESLGQLGSINYLILAENNFSGTLRSIFNISSLEFQSSETEKSKNR 179
L GK+ L +L S+ L L+ N+ SG + +S + S N+
Sbjct: 131 LNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK 189
Query: 180 FTGKLGIDFNSLINLARLNLGQKNLG-----IGTTSDL------------DFITLLRNCS 222
+G +D + +NL L++ N +G S L DF + C+
Sbjct: 190 ISGD--VDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCT 247
Query: 223 KLKTLQY--NQLTGTIPDTTGELRNLQAPDLSEN 254
+LK L NQ G IP L++LQ L+EN
Sbjct: 248 ELKLLNISSNQFVGPIPPL--PLKSLQYLSLAEN 279
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 88/230 (38%), Gaps = 52/230 (22%)
Query: 75 LDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVG-CLSRLETLIGGYRLGGKI 133
+ L + + G + ++G + ++ L+NNS+ G IP E+G C S + + G I
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554
Query: 134 PESL-GQLGSI--------NYLILAENNFSGTLRSIFNISSLEFQSSETEK--------- 175
P ++ Q G I Y+ + + N+ LEFQ +E+
Sbjct: 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL--LEFQGIRSEQLNRLSTRNP 612
Query: 176 ---------------------------SKNRFTGKLGIDFNSLINLARLNLGQKNLGIGT 208
S N +G + + S+ L LNLG ++ +
Sbjct: 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI---S 669
Query: 209 TSDLDFITLLRNCSKLKTLQYNQLTGTIPDTTGELRNLQAPDLSENNLNA 258
S D + LR + L L N+L G IP L L DLS NNL+
Sbjct: 670 GSIPDEVGDLRGLNILD-LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 83/192 (43%), Gaps = 12/192 (6%)
Query: 73 TKLDLRSKSIGGFLSPFVGNP-SFVRVIVLANNSYYGEIPNEV-GCLSRLETL-IGGYRL 129
T+L L + S F+ P P ++ + LA N + GEIP+ + G L L + G
Sbjct: 247 TELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306
Query: 130 GGKIPESLGQLGSINYLILAENNFSGTL--RSIFNISSLEFQSSETEKSKNRFTGKLGID 187
G +P G + L L+ NNFSG L ++ + L+ + S N F+G+L
Sbjct: 307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV----LDLSFNEFSGELPES 362
Query: 188 FNSL-INLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTLQYNQLTGTIPDTTGELRNL 246
+L +L L+L N +L +N + LQ N TG IP T L
Sbjct: 363 LTNLSASLLTLDLSSNNFSGPILPNL--CQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 420
Query: 247 QAPDLSENNLNA 258
+ LS N L+
Sbjct: 421 VSLHLSFNYLSG 432
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRL-ETLIGGYR 128
P + L+L I G + VG+ + ++ L++N G IP + L+ L E +
Sbjct: 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715
Query: 129 LGGKIPESLGQL 140
L G IPE +GQ
Sbjct: 716 LSGPIPE-MGQF 726
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 75 LDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETL-IGGYRLGGKI 133
LD+ + G++ +G+ ++ ++ L +N G IP+EVG L L L + +L G+I
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 134 PESLGQLGSINYLILAENNFSGTLRSI 160
P+++ L + + L+ NN SG + +
Sbjct: 694 PQAMSALTMLTEIDLSNNNLSGPIPEM 720
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 79/201 (39%), Gaps = 42/201 (20%)
Query: 99 IVLANNSYYGEIPNEVGCLSRLETL-IGGYRLGGKIPESLGQLGSINYLILAENNFSGTL 157
I L+NN GEIP +G L L L + G IP LG S+ +L L N F+GT+
Sbjct: 492 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 551
Query: 158 -RSIFNISS------------------------------LEFQSSETEKSKNRFTGKLGI 186
++F S LEFQ +E+ NR + +
Sbjct: 552 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ-LNRLSTRNPC 610
Query: 187 DFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSK---------LKTLQYNQLTGTIP 237
+ S + + N G D+ + L K + L +N ++G+IP
Sbjct: 611 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 670
Query: 238 DTTGELRNLQAPDLSENNLNA 258
D G+LR L DLS N L+
Sbjct: 671 DEVGDLRGLNILDLSSNKLDG 691
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 79/181 (43%), Gaps = 36/181 (19%)
Query: 72 VTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSR-LETLIGGY-RL 129
+T LDL G + PF G+ S + + L++N++ GE+P + R L+ L +
Sbjct: 293 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 352
Query: 130 GGKIPESLGQL-GSINYLILAENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDF 188
G++PESL L S+ L L+ NNFSG + + + E N FTGK+
Sbjct: 353 SGELPESLTNLSASLLTLDLSSNNFSGPILPNL-CQNPKNTLQELYLQNNGFTGKIP--- 408
Query: 189 NSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTLQ--YNQLTGTIPDTTGELRNL 246
L NCS+L +L +N L+GTIP + G L L
Sbjct: 409 ---------------------------PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 441
Query: 247 Q 247
+
Sbjct: 442 R 442
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 17/177 (9%)
Query: 88 PFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETL-IGGYRLGGKIPESLGQLGSINYL 146
PF+G+ S ++ + ++ N G+ + + L+ L I + G IP L S+ YL
Sbjct: 214 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYL 271
Query: 147 ILAENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGI 206
LAEN F+G + +S + + S N F G + F S L L L N
Sbjct: 272 SLAENKFTGEIPDF--LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF-- 327
Query: 207 GTTSDLDFITLLRNCS-KLKTLQYNQLTGTIPDTTGELRNLQAP----DLSENNLNA 258
+ +L TLL+ K+ L +N+ +G +P++ L NL A DLS NN +
Sbjct: 328 --SGELPMDTLLKMRGLKVLDLSFNEFSGELPES---LTNLSASLLTLDLSSNNFSG 379
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 100/255 (39%), Gaps = 59/255 (23%)
Query: 51 WKASLNLCQWTGVTCSHRHPRVTKLDLRSKS---------------------------IG 83
W ++ N C + GVTC R +VT +DL SK I
Sbjct: 30 WSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN 87
Query: 84 GFLSPFVGNPSFVRVIVLANNSYYGEIP--NEVGCLSRLETL---IGGYRLGGKIPESLG 138
G +S F + S + L+ NS G + +G S L+ L GK+ L
Sbjct: 88 GSVSGFKCSASLTS-LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL- 145
Query: 139 QLGSINYLILAENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLN 198
+L S+ L L+ N+ SG + +S + S N+ +G +D + +NL L+
Sbjct: 146 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD--VDVSRCVNLEFLD 203
Query: 199 LGQKNLG-----IGTTSDL------------DFITLLRNCSKLKTLQY--NQLTGTIPDT 239
+ N +G S L DF + C++LK L NQ G IP
Sbjct: 204 VSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL 263
Query: 240 TGELRNLQAPDLSEN 254
L++LQ L+EN
Sbjct: 264 --PLKSLQYLSLAEN 276
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 88/230 (38%), Gaps = 52/230 (22%)
Query: 75 LDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVG-CLSRLETLIGGYRLGGKI 133
+ L + + G + ++G + ++ L+NNS+ G IP E+G C S + + G I
Sbjct: 492 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 551
Query: 134 PESL-GQLGSI--------NYLILAENNFSGTLRSIFNISSLEFQSSETEK--------- 175
P ++ Q G I Y+ + + N+ LEFQ +E+
Sbjct: 552 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL--LEFQGIRSEQLNRLSTRNP 609
Query: 176 ---------------------------SKNRFTGKLGIDFNSLINLARLNLGQKNLGIGT 208
S N +G + + S+ L LNLG ++ +
Sbjct: 610 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI---S 666
Query: 209 TSDLDFITLLRNCSKLKTLQYNQLTGTIPDTTGELRNLQAPDLSENNLNA 258
S D + LR + L L N+L G IP L L DLS NNL+
Sbjct: 667 GSIPDEVGDLRGLNILD-LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 715
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 83/192 (43%), Gaps = 12/192 (6%)
Query: 73 TKLDLRSKSIGGFLSPFVGNP-SFVRVIVLANNSYYGEIPNEV-GCLSRLETL-IGGYRL 129
T+L L + S F+ P P ++ + LA N + GEIP+ + G L L + G
Sbjct: 244 TELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 303
Query: 130 GGKIPESLGQLGSINYLILAENNFSGTL--RSIFNISSLEFQSSETEKSKNRFTGKLGID 187
G +P G + L L+ NNFSG L ++ + L+ + S N F+G+L
Sbjct: 304 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV----LDLSFNEFSGELPES 359
Query: 188 FNSL-INLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTLQYNQLTGTIPDTTGELRNL 246
+L +L L+L N +L +N + LQ N TG IP T L
Sbjct: 360 LTNLSASLLTLDLSSNNFSGPILPNL--CQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 417
Query: 247 QAPDLSENNLNA 258
+ LS N L+
Sbjct: 418 VSLHLSFNYLSG 429
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRL-ETLIGGYR 128
P + L+L I G + VG+ + ++ L++N G IP + L+ L E +
Sbjct: 653 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 712
Query: 129 LGGKIPESLGQL 140
L G IPE +GQ
Sbjct: 713 LSGPIPE-MGQF 723
>pdb|2YYT|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Geobacillus Kaustophilus
pdb|2YYT|B Chain B, Crystal Structure Of Uncharacterized Conserved Protein
From Geobacillus Kaustophilus
pdb|2YYT|C Chain C, Crystal Structure Of Uncharacterized Conserved Protein
From Geobacillus Kaustophilus
pdb|2YYT|D Chain D, Crystal Structure Of Uncharacterized Conserved Protein
From Geobacillus Kaustophilus
pdb|2YYU|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Geobacillus Kaustophilus
pdb|2YYU|B Chain B, Crystal Structure Of Uncharacterized Conserved Protein
From Geobacillus Kaustophilus
Length = 246
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 67 HRH-PRVTKLDLRSK-SIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCL 117
H H P + LD SK + FL PF G P FV+V YY E P V L
Sbjct: 2 HMHTPFIVALDFPSKQEVERFLRPFAGTPLFVKV---GMELYYQEGPAIVAFL 51
>pdb|1R45|A Chain A, Adp-Ribosyltransferase C3bot2 From Clostridium Botulinum,
Triclinic Form
pdb|1R45|B Chain B, Adp-Ribosyltransferase C3bot2 From Clostridium Botulinum,
Triclinic Form
pdb|1R45|C Chain C, Adp-Ribosyltransferase C3bot2 From Clostridium Botulinum,
Triclinic Form
pdb|1R45|D Chain D, Adp-Ribosyltransferase C3bot2 From Clostridium Botulinum,
Triclinic Form
pdb|1R4B|A Chain A, Adp-Ribosyltransferase C3bot2 From Clostridium Botulinum,
Monoclinic Form
pdb|1R4B|B Chain B, Adp-Ribosyltransferase C3bot2 From Clostridium Botulinum,
Monoclinic Form
Length = 204
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 69 HPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYY 107
P VTK + + S GG++ P P + V++ NNSYY
Sbjct: 145 RPIVTKFKVTNGSKGGYIDPISYFPGQLEVLLPRNNSYY 183
>pdb|3NJR|A Chain A, Crystal Structure Of C-Terminal Domain Of Precorrin-6y
C5,15- Methyltransferase From Rhodobacter Capsulatus
pdb|3NJR|B Chain B, Crystal Structure Of C-Terminal Domain Of Precorrin-6y
C5,15- Methyltransferase From Rhodobacter Capsulatus
Length = 204
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 22 LSTRTHSNKTDHLLAIKSQLQDPLGPTSSWKASLNLCQWTG 62
L T+ H+ LL I +PLG W AS QW+G
Sbjct: 162 LLTQLHARHGGQLLRIDIAQAEPLGRMRGWSASRPQLQWSG 202
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 124 IGGYRLGGKIPESLGQLGSINYLILAENNFSGTLRSIFNISSLEFQSSETEKSKNR-FTG 182
+ G+ G++P+++GQL + L ++ + + R +F L SE K + R
Sbjct: 330 LAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGR-LFGDEELTPDXSEERKHRIRXHYK 388
Query: 183 KLGIDFNSLINLARL 197
K +D++ +NL+ L
Sbjct: 389 KXFLDYDQRLNLSDL 403
>pdb|1W36|C Chain C, Recbcd:dna Complex
pdb|1W36|F Chain F, Recbcd:dna Complex
pdb|3K70|C Chain C, Crystal Structure Of The Complete Initiation Complex Of
Recbcd
pdb|3K70|F Chain F, Crystal Structure Of The Complete Initiation Complex Of
Recbcd
Length = 1122
Score = 27.7 bits (60), Expect = 5.8, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 27 HSNKTDHLLAI------KSQLQDPLGPTSSWKASLNLCQWTGVTCSHRHPRVTKLDL 77
HSN+ D L A+ + +L DP P S + QW +T S + +D
Sbjct: 6 HSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANIDF 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,210,319
Number of Sequences: 62578
Number of extensions: 279583
Number of successful extensions: 640
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 576
Number of HSP's gapped (non-prelim): 36
length of query: 258
length of database: 14,973,337
effective HSP length: 97
effective length of query: 161
effective length of database: 8,903,271
effective search space: 1433426631
effective search space used: 1433426631
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)