Query 039201
Match_columns 258
No_of_seqs 288 out of 2393
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 07:18:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039201.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039201hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.7E-33 5.9E-38 275.9 17.3 225 27-258 27-274 (968)
2 PLN00113 leucine-rich repeat r 99.9 2.3E-24 5.1E-29 212.6 12.1 183 71-257 141-345 (968)
3 PLN03150 hypothetical protein; 99.8 4.2E-18 9.1E-23 160.3 12.6 150 28-185 371-532 (623)
4 KOG0617 Ras suppressor protein 99.8 1.7E-20 3.8E-25 144.8 -3.0 157 71-243 34-195 (264)
5 KOG0617 Ras suppressor protein 99.7 2.1E-19 4.5E-24 138.8 -4.2 154 90-257 29-186 (264)
6 KOG0444 Cytoskeletal regulator 99.7 2.5E-18 5.5E-23 155.1 -3.2 176 71-256 127-351 (1255)
7 KOG4194 Membrane glycoprotein 99.7 2.3E-17 4.9E-22 147.8 1.4 101 70-172 125-229 (873)
8 KOG4194 Membrane glycoprotein 99.6 6.9E-17 1.5E-21 144.8 2.8 176 70-256 173-377 (873)
9 KOG0472 Leucine-rich repeat pr 99.6 1.3E-16 2.8E-21 137.5 2.5 178 70-257 252-541 (565)
10 KOG0444 Cytoskeletal regulator 99.6 2.5E-17 5.3E-22 148.8 -2.0 173 70-256 7-185 (1255)
11 KOG0472 Leucine-rich repeat pr 99.6 2.9E-17 6.3E-22 141.5 -6.3 168 72-256 139-309 (565)
12 PRK15370 E3 ubiquitin-protein 99.5 1.2E-13 2.6E-18 131.6 13.3 115 72-205 180-296 (754)
13 PRK15387 E3 ubiquitin-protein 99.5 8.6E-14 1.9E-18 132.4 11.2 100 141-258 342-459 (788)
14 PLN03210 Resistant to P. syrin 99.5 2.1E-13 4.5E-18 136.9 13.7 175 71-253 635-878 (1153)
15 KOG4237 Extracellular matrix p 99.5 3.8E-15 8.2E-20 128.2 -0.6 83 71-154 68-153 (498)
16 cd00116 LRR_RI Leucine-rich re 99.5 8.5E-15 1.8E-19 127.0 1.3 182 70-257 81-291 (319)
17 KOG0618 Serine/threonine phosp 99.5 3.4E-15 7.4E-20 139.8 -2.6 169 71-257 242-465 (1081)
18 PRK15370 E3 ubiquitin-protein 99.4 3.1E-13 6.6E-18 128.9 9.7 158 71-257 200-380 (754)
19 PLN03150 hypothetical protein; 99.4 2.1E-13 4.5E-18 128.7 8.5 110 95-208 419-531 (623)
20 cd00116 LRR_RI Leucine-rich re 99.4 1.3E-14 2.9E-19 125.8 -1.0 181 71-257 52-263 (319)
21 PLN03210 Resistant to P. syrin 99.4 1.6E-12 3.5E-17 130.5 13.5 125 71-205 612-738 (1153)
22 KOG0618 Serine/threonine phosp 99.4 1.7E-14 3.7E-19 135.2 -0.9 169 71-255 265-487 (1081)
23 KOG0532 Leucine-rich repeat (L 99.4 1E-14 2.3E-19 130.5 -5.1 167 72-257 77-247 (722)
24 PRK15387 E3 ubiquitin-protein 99.3 1.1E-11 2.3E-16 118.2 11.2 70 74-154 205-275 (788)
25 COG4886 Leucine-rich repeat (L 99.3 2.3E-12 5.1E-17 115.4 5.7 169 71-257 117-290 (394)
26 KOG0532 Leucine-rich repeat (L 99.2 8.1E-13 1.8E-17 118.6 -4.4 149 91-257 72-224 (722)
27 COG4886 Leucine-rich repeat (L 99.2 2.9E-11 6.4E-16 108.3 4.8 167 74-257 97-268 (394)
28 PF14580 LRR_9: Leucine-rich r 99.0 6.3E-10 1.4E-14 88.2 4.2 131 91-233 16-151 (175)
29 PF14580 LRR_9: Leucine-rich r 98.8 3.3E-09 7.1E-14 84.1 4.6 124 114-251 15-147 (175)
30 KOG1259 Nischarin, modulator o 98.8 3.9E-10 8.5E-15 94.7 -1.3 103 94-205 284-387 (490)
31 KOG4237 Extracellular matrix p 98.8 1.3E-09 2.9E-14 94.4 0.1 92 77-172 53-148 (498)
32 PF13855 LRR_8: Leucine rich r 98.8 9.6E-09 2.1E-13 67.1 3.9 60 141-204 1-61 (61)
33 PF08263 LRRNT_2: Leucine rich 98.7 1.6E-08 3.4E-13 61.2 3.9 37 30-66 4-43 (43)
34 KOG3207 Beta-tubulin folding c 98.7 2.6E-09 5.6E-14 93.6 0.2 176 71-256 122-313 (505)
35 KOG1259 Nischarin, modulator o 98.7 1.6E-09 3.4E-14 91.2 -1.5 128 71-207 285-414 (490)
36 KOG4658 Apoptotic ATPase [Sign 98.6 1.9E-08 4.1E-13 97.9 3.0 175 70-256 545-729 (889)
37 PF13855 LRR_8: Leucine rich r 98.6 2.9E-08 6.2E-13 64.8 2.7 57 95-152 2-60 (61)
38 KOG3207 Beta-tubulin folding c 98.6 6.4E-09 1.4E-13 91.2 -0.9 182 70-257 146-339 (505)
39 KOG1909 Ran GTPase-activating 98.3 1.6E-07 3.4E-12 80.5 0.6 112 90-205 88-226 (382)
40 KOG0531 Protein phosphatase 1, 98.3 2.2E-07 4.9E-12 83.9 1.3 175 72-257 74-268 (414)
41 KOG4658 Apoptotic ATPase [Sign 98.1 1.7E-06 3.8E-11 84.5 3.4 104 95-203 546-653 (889)
42 KOG1859 Leucine-rich repeat pr 98.1 7.9E-08 1.7E-12 89.3 -5.9 108 135-256 181-291 (1096)
43 KOG0531 Protein phosphatase 1, 98.0 7.2E-07 1.6E-11 80.7 -0.6 108 91-207 69-177 (414)
44 KOG1859 Leucine-rich repeat pr 98.0 1.5E-07 3.3E-12 87.5 -6.7 122 73-204 167-291 (1096)
45 KOG1909 Ran GTPase-activating 98.0 2E-06 4.3E-11 73.8 0.4 180 70-256 92-310 (382)
46 KOG2120 SCF ubiquitin ligase, 97.9 3E-07 6.6E-12 77.5 -5.7 153 95-253 186-372 (419)
47 PF12799 LRR_4: Leucine Rich r 97.9 1.6E-05 3.4E-10 48.1 3.3 32 173-205 6-37 (44)
48 PF12799 LRR_4: Leucine Rich r 97.9 1.4E-05 3E-10 48.4 2.9 36 141-181 1-37 (44)
49 KOG4579 Leucine-rich repeat (L 97.8 2.7E-06 5.7E-11 64.1 -1.8 127 72-207 29-161 (177)
50 KOG4579 Leucine-rich repeat (L 97.7 3.6E-06 7.7E-11 63.5 -1.5 103 95-205 28-136 (177)
51 KOG1644 U2-associated snRNP A' 97.4 0.00046 9.9E-09 55.4 5.8 101 96-202 44-150 (233)
52 KOG2982 Uncharacterized conser 97.4 9.9E-05 2.1E-09 62.6 2.1 177 71-252 72-287 (418)
53 COG5238 RNA1 Ran GTPase-activa 97.3 9.4E-05 2E-09 62.0 1.3 82 71-153 31-132 (388)
54 PRK15386 type III secretion pr 97.3 0.00049 1.1E-08 61.5 5.9 71 71-153 53-124 (426)
55 KOG1644 U2-associated snRNP A' 97.2 0.00059 1.3E-08 54.8 4.6 101 142-252 43-148 (233)
56 KOG3665 ZYG-1-like serine/thre 97.0 0.00028 6.1E-09 67.6 1.1 14 243-256 249-262 (699)
57 COG5238 RNA1 Ran GTPase-activa 96.9 0.00073 1.6E-08 56.8 3.0 113 89-205 87-227 (388)
58 KOG2739 Leucine-rich acidic nu 96.7 0.00096 2.1E-08 55.5 2.0 38 117-154 64-104 (260)
59 KOG2739 Leucine-rich acidic nu 96.7 0.0014 3E-08 54.6 2.8 90 137-234 61-155 (260)
60 PRK15386 type III secretion pr 96.5 0.011 2.3E-07 53.2 7.5 110 71-202 73-187 (426)
61 KOG3665 ZYG-1-like serine/thre 96.4 0.0018 4E-08 62.1 2.3 104 141-256 122-232 (699)
62 PF00560 LRR_1: Leucine Rich R 96.4 0.001 2.2E-08 33.7 0.3 21 95-116 1-21 (22)
63 KOG2982 Uncharacterized conser 96.3 0.0035 7.5E-08 53.5 3.3 172 58-233 84-290 (418)
64 KOG2123 Uncharacterized conser 96.1 0.00046 1E-08 58.1 -3.0 84 138-227 38-122 (388)
65 PF00560 LRR_1: Leucine Rich R 96.1 0.0027 5.9E-08 32.1 0.9 15 143-158 2-16 (22)
66 KOG2120 SCF ubiquitin ligase, 95.7 0.0005 1.1E-08 58.4 -4.2 54 71-124 211-266 (419)
67 KOG0473 Leucine-rich repeat pr 94.4 0.00085 1.8E-08 55.2 -6.4 86 68-155 40-125 (326)
68 PF13306 LRR_5: Leucine rich r 93.9 0.31 6.7E-06 35.9 7.1 32 71-103 13-44 (129)
69 KOG2123 Uncharacterized conser 93.9 0.0076 1.6E-07 51.0 -1.9 64 116-185 39-105 (388)
70 PF13306 LRR_5: Leucine rich r 93.8 0.36 7.8E-06 35.5 7.2 102 89-200 7-111 (129)
71 PF13504 LRR_7: Leucine rich r 93.5 0.047 1E-06 25.7 1.2 14 94-107 1-14 (17)
72 KOG0473 Leucine-rich repeat pr 90.7 0.011 2.3E-07 48.8 -4.8 78 137-227 38-116 (326)
73 smart00369 LRR_TYP Leucine-ric 90.1 0.29 6.3E-06 25.4 2.0 20 93-113 1-20 (26)
74 smart00370 LRR Leucine-rich re 90.1 0.29 6.3E-06 25.4 2.0 20 93-113 1-20 (26)
75 PF13516 LRR_6: Leucine Rich r 86.6 0.23 5E-06 25.3 0.2 15 243-257 1-15 (24)
76 smart00365 LRR_SD22 Leucine-ri 82.1 1.2 2.7E-05 23.4 1.8 15 243-257 1-15 (26)
77 KOG4308 LRR-containing protein 80.3 0.011 2.3E-07 54.5 -11.1 180 72-257 89-303 (478)
78 smart00368 LRR_RI Leucine rich 79.6 1.6 3.4E-05 23.2 1.7 14 244-257 2-15 (28)
79 KOG4308 LRR-containing protein 75.9 0.032 6.9E-07 51.4 -9.3 157 71-233 116-303 (478)
80 smart00364 LRR_BAC Leucine-ric 71.5 3 6.5E-05 21.9 1.4 18 94-112 2-19 (26)
81 KOG1947 Leucine rich repeat pr 53.8 6.1 0.00013 35.8 1.0 13 242-254 293-305 (482)
82 KOG1947 Leucine rich repeat pr 48.6 2.4 5.1E-05 38.5 -2.6 14 90-103 210-223 (482)
83 KOG4341 F-box protein containi 41.7 9.9 0.00021 34.4 0.4 13 191-203 400-412 (483)
84 KOG3864 Uncharacterized conser 41.0 4.7 0.0001 32.8 -1.6 34 71-104 102-135 (221)
85 KOG3763 mRNA export factor TAP 37.9 17 0.00037 34.0 1.3 92 138-233 215-312 (585)
86 smart00367 LRR_CC Leucine-rich 33.4 31 0.00068 17.5 1.4 13 243-255 1-13 (26)
87 PF05984 Cytomega_UL20A: Cytom 27.4 64 0.0014 22.1 2.4 17 1-17 1-17 (100)
88 PF10731 Anophelin: Thrombin i 26.6 95 0.0021 19.8 2.9 10 1-10 1-10 (65)
89 PF13260 DUF4051: Protein of u 23.0 1.8E+02 0.0038 17.7 3.4 18 24-41 26-43 (54)
90 TIGR00864 PCC polycystin catio 21.0 61 0.0013 36.5 2.0 30 147-181 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.7e-33 Score=275.93 Aligned_cols=225 Identities=32% Similarity=0.528 Sum_probs=156.6
Q ss_pred CCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccceeeCCCCCcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCC
Q 039201 27 HSNKTDHLLAIKSQLQDPLGPTSSWKASLNLCQWTGVTCSHRHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSY 106 (258)
Q Consensus 27 ~~~~~~aL~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l 106 (258)
.+.+.+||++||+++.+|...+.+|....+||.|.||+|+.. ++|+.|+++++++.|.+++.+..+++|++|++++|.+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~-~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~ 105 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNS-SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL 105 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCCC-CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc
Confidence 345556999999999888777899988889999999999864 4999999999999999999999999999999999999
Q ss_pred cCCCCcccC-CCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccc
Q 039201 107 YGEIPNEVG-CLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGK 183 (258)
Q Consensus 107 ~g~~p~~l~-~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ 183 (258)
.|.+|..+. ++++|++|+ ++|+++|.+|. +.+++|++|++++|.+++.+| .++++++|++ |++++|.+.+.
T Consensus 106 ~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~----L~L~~n~l~~~ 179 (968)
T PLN00113 106 SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV----LDLGGNVLVGK 179 (968)
T ss_pred CCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCE----EECccCccccc
Confidence 999997765 788888888 66666665553 345555555555555555555 5555555555 55555555555
Q ss_pred cCccccCCCCCCeEecCCCcCCccCCCCc------------------hhhhhhcCCCCCccc--cccccccccchhhcCC
Q 039201 184 LGIDFNSLINLARLNLGQKNLGIGTTSDL------------------DFITLLRNCSKLKTL--QYNQLTGTIPDTTGEL 243 (258)
Q Consensus 184 ip~~~~~l~~L~~L~ls~N~l~g~~p~~~------------------~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l 243 (258)
+|..++++++|++|++++|.+.+.+|..+ ..|..++++++|++| ++|+++|.+|..++.+
T Consensus 180 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 259 (968)
T PLN00113 180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL 259 (968)
T ss_pred CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCC
Confidence 55555555555555555555544422110 134455666666665 6666666666666666
Q ss_pred CCCCeEeccCCcCCC
Q 039201 244 RNLQAPDLSENNLNA 258 (258)
Q Consensus 244 ~~L~~L~Ls~N~l~G 258 (258)
++|++|++++|+++|
T Consensus 260 ~~L~~L~L~~n~l~~ 274 (968)
T PLN00113 260 KNLQYLFLYQNKLSG 274 (968)
T ss_pred CCCCEEECcCCeeec
Confidence 667777766666543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=2.3e-24 Score=212.65 Aligned_cols=183 Identities=31% Similarity=0.428 Sum_probs=111.3
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA 149 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~ 149 (258)
+++.|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|+ ++|.+.+.+|..++++++|++|+++
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 220 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence 456666666666666666667777777777777777666776667777777776 5666666666666666777777777
Q ss_pred ccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCc----------------
Q 039201 150 ENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDL---------------- 212 (258)
Q Consensus 150 ~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~---------------- 212 (258)
+|++++.+| .++++++|++ |++++|++++.+|..++++++|++|++++|.+++.+|..+
T Consensus 221 ~n~l~~~~p~~l~~l~~L~~----L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 296 (968)
T PLN00113 221 YNNLSGEIPYEIGGLTSLNH----LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296 (968)
T ss_pred CCccCCcCChhHhcCCCCCE----EECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence 776666666 6666666666 6666666666666666666666666666666665533211
Q ss_pred --hhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201 213 --DFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLN 257 (258)
Q Consensus 213 --~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 257 (258)
..|..+.++++|++| ++|.++|.+|..+..+++|+.|++++|+++
T Consensus 297 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 345 (968)
T PLN00113 297 SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS 345 (968)
T ss_pred ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCc
Confidence 022333344444444 444444444444444555555555555443
No 3
>PLN03150 hypothetical protein; Provisional
Probab=99.76 E-value=4.2e-18 Score=160.32 Aligned_cols=150 Identities=28% Similarity=0.431 Sum_probs=123.9
Q ss_pred CChHHHHHHHHHhCCCCCCCCCCCCCCCCCc-----cccceeeCCCC----CcEEEEEcCCCCCcccCCccCCCCCCCCE
Q 039201 28 SNKTDHLLAIKSQLQDPLGPTSSWKASLNLC-----QWTGVTCSHRH----PRVTKLDLRSKSIGGFLSPFVGNPSFVRV 98 (258)
Q Consensus 28 ~~~~~aL~~~~~~~~~~~~~~~~w~~~~~~c-----~w~gv~c~~~~----~~v~~l~l~~~~l~g~lp~~~~~l~~L~~ 98 (258)
..+.+||+++|+.+.++.. .+|.. ++| .|.||.|.... ..|+.|+|+++++.|.+|+.++.+++|++
T Consensus 371 ~~~~~aL~~~k~~~~~~~~--~~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~ 446 (623)
T PLN03150 371 LEEVSALQTLKSSLGLPLR--FGWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQS 446 (623)
T ss_pred chHHHHHHHHHHhcCCccc--CCCCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCE
Confidence 3445599999999966532 47864 344 79999996321 25899999999999999999999999999
Q ss_pred EEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCC-CCcceecceeec
Q 039201 99 IVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNI-SSLEFQSSETEK 175 (258)
Q Consensus 99 L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l-~~L~~l~l~L~l 175 (258)
|+|++|.+.|.+|..++++++|++|+ ++|+++|.+|+.++++++|++|+|++|+++|.+| .++.. .++.. +++
T Consensus 447 L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~----l~~ 522 (623)
T PLN03150 447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRAS----FNF 522 (623)
T ss_pred EECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCce----EEe
Confidence 99999999999999999999999999 8899999999999999999999999999999999 77653 45566 778
Q ss_pred CCCccccccC
Q 039201 176 SKNRFTGKLG 185 (258)
Q Consensus 176 ~~n~~~g~ip 185 (258)
.+|......|
T Consensus 523 ~~N~~lc~~p 532 (623)
T PLN03150 523 TDNAGLCGIP 532 (623)
T ss_pred cCCccccCCC
Confidence 8887554444
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.76 E-value=1.7e-20 Score=144.75 Aligned_cols=157 Identities=27% Similarity=0.428 Sum_probs=142.1
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA 149 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~ 149 (258)
+++.+.+++|.++ .+|+.|+.+.+|++|++++|+++ ++|.+++.+++|+.|+ +-|.+. .+|..|+.++-|+.|||.
T Consensus 34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence 7899999999997 67888999999999999999998 8999999999999999 667666 689999999999999999
Q ss_pred ccccc-cccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc
Q 039201 150 ENNFS-GTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL 227 (258)
Q Consensus 150 ~n~l~-g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L 227 (258)
+|++. ..+| .+..++.|+. +++++|.|. .+|..++++++|+.|.+..|.+-. .|.+++.+++|+.|
T Consensus 111 ynnl~e~~lpgnff~m~tlra----lyl~dndfe-~lp~dvg~lt~lqil~lrdndll~-------lpkeig~lt~lrel 178 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRA----LYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS-------LPKEIGDLTRLREL 178 (264)
T ss_pred ccccccccCCcchhHHHHHHH----HHhcCCCcc-cCChhhhhhcceeEEeeccCchhh-------CcHHHHHHHHHHHH
Confidence 99997 4778 8888999999 999999997 889999999999999999998754 78999999999988
Q ss_pred --cccccccccchhhcCC
Q 039201 228 --QYNQLTGTIPDTTGEL 243 (258)
Q Consensus 228 --~~N~l~g~ip~~l~~l 243 (258)
++|+++ .+|++++.+
T Consensus 179 hiqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 179 HIQGNRLT-VLPPELANL 195 (264)
T ss_pred hcccceee-ecChhhhhh
Confidence 999999 889888765
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.71 E-value=2.1e-19 Score=138.80 Aligned_cols=154 Identities=23% Similarity=0.322 Sum_probs=138.2
Q ss_pred CCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEcCCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcce
Q 039201 90 VGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLIGGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEF 168 (258)
Q Consensus 90 ~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~ 168 (258)
+.++.+++.|.||.|+++ .+|+.+..+.+|+.|+-.|+-..++|.++..+++|+.|+++.|++. .+| .++.++.|+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 567888999999999998 7888999999999999444444489999999999999999999997 788 9999999999
Q ss_pred ecceeecCCCccc-cccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCC
Q 039201 169 QSSETEKSKNRFT-GKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRN 245 (258)
Q Consensus 169 l~l~L~l~~n~~~-g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~ 245 (258)
+|+.+|++. ..+|-.+..++.|+.|++++|.|+- +|+.++++++|+.| .+|.+- ++|.+++.+.+
T Consensus 107 ----ldltynnl~e~~lpgnff~m~tlralyl~dndfe~-------lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~ 174 (264)
T KOG0617|consen 107 ----LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI-------LPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTR 174 (264)
T ss_pred ----hhccccccccccCCcchhHHHHHHHHHhcCCCccc-------CChhhhhhcceeEEeeccCchh-hCcHHHHHHHH
Confidence 999999886 4578889999999999999999986 68899999999988 778777 89999999999
Q ss_pred CCeEeccCCcCC
Q 039201 246 LQAPDLSENNLN 257 (258)
Q Consensus 246 L~~L~Ls~N~l~ 257 (258)
|+.|.+.+|+++
T Consensus 175 lrelhiqgnrl~ 186 (264)
T KOG0617|consen 175 LRELHIQGNRLT 186 (264)
T ss_pred HHHHhcccceee
Confidence 999999999875
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.66 E-value=2.5e-18 Score=155.13 Aligned_cols=176 Identities=23% Similarity=0.286 Sum_probs=124.7
Q ss_pred cEEEEEcCCCCCcccCC-ccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCC---------------------
Q 039201 71 RVTKLDLRSKSIGGFLS-PFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGY--------------------- 127 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp-~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n--------------------- 127 (258)
+...|+|++|++. +|| +-+.+++.|-.||||+|.+. .+|+.+..+..|++|+ ++|
T Consensus 127 n~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm 204 (1255)
T KOG0444|consen 127 NSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM 204 (1255)
T ss_pred CcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence 4556677777665 444 34567777777777777776 5677666666666665 222
Q ss_pred ----ccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecce-------------------eecCCCccccc
Q 039201 128 ----RLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSE-------------------TEKSKNRFTGK 183 (258)
Q Consensus 128 ----~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~-------------------L~l~~n~~~g~ 183 (258)
.-...+|.++..|.+|+.+|+|.|++. .+| .+.++++|+.|+++ |+++.|+++ .
T Consensus 205 s~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~ 282 (1255)
T KOG0444|consen 205 SNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-V 282 (1255)
T ss_pred ccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-c
Confidence 112357778888888888888888876 667 77778888886554 777777776 6
Q ss_pred cCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcC
Q 039201 184 LGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNL 256 (258)
Q Consensus 184 ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 256 (258)
+|+.+.++++|+.|++.+|+++-. .+|..++++..|+.+ ++|.+. -+|+.+..+.+|+.|.|++|+|
T Consensus 283 LP~avcKL~kL~kLy~n~NkL~Fe-----GiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 283 LPDAVCKLTKLTKLYANNNKLTFE-----GIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRL 351 (1255)
T ss_pred chHHHhhhHHHHHHHhccCccccc-----CCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccce
Confidence 777788888888888877764322 167778888877777 667776 7888888888888888888875
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.65 E-value=2.3e-17 Score=147.84 Aligned_cols=101 Identities=25% Similarity=0.253 Sum_probs=72.1
Q ss_pred CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCC-cccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEE
Q 039201 70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIP-NEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLI 147 (258)
Q Consensus 70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p-~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~ 147 (258)
+|++.|+|.+|.++..-.+++..++.|++||||.|.++ ++| +.+..-.++++|+ ++|.++..=-..|.++.+|.+|.
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlk 203 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLK 203 (873)
T ss_pred cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeee
Confidence 47899999998887666678888889999999998887 555 4555666788887 66666543345566667777777
Q ss_pred ccccccccccc--cccCCCCcceecce
Q 039201 148 LAENNFSGTLR--SIFNISSLEFQSSE 172 (258)
Q Consensus 148 L~~n~l~g~~p--~~~~l~~L~~l~l~ 172 (258)
|+.|+++ .+| .|.++++|+.|++.
T Consensus 204 LsrNrit-tLp~r~Fk~L~~L~~LdLn 229 (873)
T KOG4194|consen 204 LSRNRIT-TLPQRSFKRLPKLESLDLN 229 (873)
T ss_pred cccCccc-ccCHHHhhhcchhhhhhcc
Confidence 7777776 444 55567777766554
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.64 E-value=6.9e-17 Score=144.78 Aligned_cols=176 Identities=21% Similarity=0.204 Sum_probs=119.6
Q ss_pred CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCC-cccCCCCCCcEEc-CCCcc------------------
Q 039201 70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIP-NEVGCLSRLETLI-GGYRL------------------ 129 (258)
Q Consensus 70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p-~~l~~l~~L~~L~-~~n~l------------------ 129 (258)
.++++|+|++|.++..--..|..+..|.+|.|+.|+++ .+| ..|.++++|+.|+ .+|.+
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlk 251 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLK 251 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhh
Confidence 36788888888887544557788888888888888888 555 5567788888887 33332
Q ss_pred ------CCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCC
Q 039201 130 ------GGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQK 202 (258)
Q Consensus 130 ------~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N 202 (258)
..--...|..|.++++|+|+.|+++..-. ++.++++|+. |++++|.+...-+.+|...++|++|+|++|
T Consensus 252 lqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~----L~lS~NaI~rih~d~WsftqkL~~LdLs~N 327 (873)
T KOG4194|consen 252 LQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQ----LDLSYNAIQRIHIDSWSFTQKLKELDLSSN 327 (873)
T ss_pred hhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhh----hccchhhhheeecchhhhcccceeEecccc
Confidence 21111235677888999999998885545 7888999999 999999999888889999999999999999
Q ss_pred cCCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcC
Q 039201 203 NLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNL 256 (258)
Q Consensus 203 ~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 256 (258)
.++.-.+ ..+..+..|+.| ++|.++----..|..+++|+.|||++|.+
T Consensus 328 ~i~~l~~------~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l 377 (873)
T KOG4194|consen 328 RITRLDE------GSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL 377 (873)
T ss_pred ccccCCh------hHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeE
Confidence 9987433 233333333333 44444422222333444444444444444
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.62 E-value=1.3e-16 Score=137.55 Aligned_cols=178 Identities=24% Similarity=0.327 Sum_probs=116.9
Q ss_pred CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCcc-------------------
Q 039201 70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRL------------------- 129 (258)
Q Consensus 70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l------------------- 129 (258)
+++..+|++.|.+. ++|.++..+++|++||+|+|.++ .+|.+++++ .|+.|. .+|-+
T Consensus 252 ~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyL 328 (565)
T KOG0472|consen 252 NSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYL 328 (565)
T ss_pred ccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHH
Confidence 47899999999997 78999999999999999999998 588889998 777764 11100
Q ss_pred ---------------------------------------------CCCCCcccCCCCC---CCEEEcccccc--------
Q 039201 130 ---------------------------------------------GGKIPESLGQLGS---INYLILAENNF-------- 153 (258)
Q Consensus 130 ---------------------------------------------~g~ip~~~~~l~~---L~~L~L~~n~l-------- 153 (258)
...+|+++..-.+ ...++++.|++
T Consensus 329 rs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~ 408 (565)
T KOG0472|consen 329 RSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLV 408 (565)
T ss_pred HHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhH
Confidence 0012222111111 22333333322
Q ss_pred ---------------ccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCc-----
Q 039201 154 ---------------SGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDL----- 212 (258)
Q Consensus 154 ---------------~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~----- 212 (258)
.+.+| .+..+++|.. +++++|-+. .+|..++.+..|+.|+++.|.|.- +|...
T Consensus 409 ~lkelvT~l~lsnn~isfv~~~l~~l~kLt~----L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~-lP~~~y~lq~ 482 (565)
T KOG0472|consen 409 ELKELVTDLVLSNNKISFVPLELSQLQKLTF----LDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRM-LPECLYELQT 482 (565)
T ss_pred HHHHHHHHHHhhcCccccchHHHHhhhccee----eecccchhh-hcchhhhhhhhhheeccccccccc-chHHHhhHHH
Confidence 12334 4455556666 666665554 566666666666666666665542 22111
Q ss_pred ------------h-hhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201 213 ------------D-FITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLN 257 (258)
Q Consensus 213 ------------~-~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 257 (258)
. -+..+++|.+|..| .+|.+. .||+.++++++|++|++++|.|.
T Consensus 483 lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 483 LETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 0 23458888888887 788887 89999999999999999999885
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.62 E-value=2.5e-17 Score=148.84 Aligned_cols=173 Identities=24% Similarity=0.333 Sum_probs=148.9
Q ss_pred CcEEEEEcCCCCCc-ccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEE
Q 039201 70 PRVTKLDLRSKSIG-GFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLI 147 (258)
Q Consensus 70 ~~v~~l~l~~~~l~-g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~ 147 (258)
+-|+.+|+++|.++ +.+|..+..++.++-|.|...++. .+|.+++.+.+|++|. ..|++. .+-.++..++.|+.++
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI 84 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence 46899999999998 678999999999999999998887 8999999999999998 777776 4556788899999999
Q ss_pred ccccccc-cccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCc
Q 039201 148 LAENNFS-GTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLK 225 (258)
Q Consensus 148 L~~n~l~-g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~ 225 (258)
+..|++. ..|| ++..+..|.. +||+.|++. ++|..+..-+++-+|+||+|++.. ||. +.+.+++.|-
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~----lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Iet-IPn-----~lfinLtDLL 153 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTI----LDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIET-IPN-----SLFINLTDLL 153 (1255)
T ss_pred hhccccccCCCCchhccccccee----eecchhhhh-hcchhhhhhcCcEEEEcccCcccc-CCc-----hHHHhhHhHh
Confidence 9999997 3677 9999999999 999999998 889999999999999999999975 332 3355666655
Q ss_pred cc--cccccccccchhhcCCCCCCeEeccCCcC
Q 039201 226 TL--QYNQLTGTIPDTTGELRNLQAPDLSENNL 256 (258)
Q Consensus 226 ~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 256 (258)
+| ++|++. .+|+.+..+.+||+|+|++|.|
T Consensus 154 fLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 154 FLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPL 185 (1255)
T ss_pred hhccccchhh-hcCHHHHHHhhhhhhhcCCChh
Confidence 55 899998 8999999999999999999976
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.57 E-value=2.9e-17 Score=141.46 Aligned_cols=168 Identities=24% Similarity=0.264 Sum_probs=143.3
Q ss_pred EEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEcCCCccCCCCCcccCCCCCCCEEEcccc
Q 039201 72 VTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLIGGYRLGGKIPESLGQLGSINYLILAEN 151 (258)
Q Consensus 72 v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~~~n~l~g~ip~~~~~l~~L~~L~L~~n 151 (258)
+..++..+|+++ .+|+.+.++.++..+++.+|++. .+|+..-+++.|++||...++-+.+|++++.|.+|+.|||..|
T Consensus 139 l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~N 216 (565)
T KOG0472|consen 139 LEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRN 216 (565)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhc
Confidence 555666677776 67888888889999999999888 5665565699999999777777899999999999999999999
Q ss_pred ccccccccccCCCCcceecceeecCCCccccccCcccc-CCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--c
Q 039201 152 NFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFN-SLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--Q 228 (258)
Q Consensus 152 ~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~-~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~ 228 (258)
++. .+|+|..+..|.+ ++++.|++. .+|+... +++++.+||+..|+++. .|.++..+.+|++| +
T Consensus 217 ki~-~lPef~gcs~L~E----lh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke-------~Pde~clLrsL~rLDlS 283 (565)
T KOG0472|consen 217 KIR-FLPEFPGCSLLKE----LHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE-------VPDEICLLRSLERLDLS 283 (565)
T ss_pred ccc-cCCCCCccHHHHH----HHhcccHHH-hhHHHHhcccccceeeecccccccc-------CchHHHHhhhhhhhccc
Confidence 997 7889999999999 888999887 7788776 88999999999999987 68888888888888 8
Q ss_pred ccccccccchhhcCCCCCCeEeccCCcC
Q 039201 229 YNQLTGTIPDTTGELRNLQAPDLSENNL 256 (258)
Q Consensus 229 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 256 (258)
+|.++ .+|.+++++ .|+.|-+.+|.+
T Consensus 284 NN~is-~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 284 NNDIS-SLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred CCccc-cCCcccccc-eeeehhhcCCch
Confidence 99998 788899999 899999998876
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.52 E-value=1.2e-13 Score=131.63 Aligned_cols=115 Identities=20% Similarity=0.307 Sum_probs=59.7
Q ss_pred EEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccc
Q 039201 72 VTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAE 150 (258)
Q Consensus 72 v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~ 150 (258)
.+.+++++++++ .+|..+. +.|+.|++++|.++ .+|..+. ++|++|+ ++|+++ .+|..+. ++|+.|++++
T Consensus 180 ~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 180 KTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSI 250 (754)
T ss_pred ceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcC
Confidence 556777776665 3555442 45777777777776 4665443 3666666 555554 4554332 2455555555
Q ss_pred cccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCC
Q 039201 151 NNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLG 205 (258)
Q Consensus 151 n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~ 205 (258)
|++. .+| .+. ++|+. |++++|+++ .+|..+. ++|+.|++++|+++
T Consensus 251 N~L~-~LP~~l~--s~L~~----L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 251 NRIT-ELPERLP--SALQS----LDLFHNKIS-CLPENLP--EELRYLSVYDNSIR 296 (754)
T ss_pred CccC-cCChhHh--CCCCE----EECcCCccC-ccccccC--CCCcEEECCCCccc
Confidence 5554 444 332 24444 444555544 3444332 24445555544444
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.51 E-value=8.6e-14 Score=132.35 Aligned_cols=100 Identities=24% Similarity=0.245 Sum_probs=65.7
Q ss_pred CCCCEEEccccccccccc-cccCC-----------------CCcceecceeecCCCccccccCccccCCCCCCeEecCCC
Q 039201 141 GSINYLILAENNFSGTLR-SIFNI-----------------SSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQK 202 (258)
Q Consensus 141 ~~L~~L~L~~n~l~g~~p-~~~~l-----------------~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N 202 (258)
.+|++|++++|++++ +| ...++ .+|+. |++++|+++ .+|.. .++|+.|++++|
T Consensus 342 ~~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~----LdLs~N~Lt-~LP~l---~s~L~~LdLS~N 412 (788)
T PRK15387 342 SGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKE----LIVSGNRLT-SLPVL---PSELKELMVSGN 412 (788)
T ss_pred cccceEecCCCccCC-CCCCCcccceehhhccccccCcccccccce----EEecCCccc-CCCCc---ccCCCEEEccCC
Confidence 367777777777773 44 21111 23445 666667666 35542 246777777777
Q ss_pred cCCccCCCCchhhhhhcCCCCCccccccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201 203 NLGIGTTSDLDFITLLRNCSKLKTLQYNQLTGTIPDTTGELRNLQAPDLSENNLNA 258 (258)
Q Consensus 203 ~l~g~~p~~~~~~~~l~~l~~L~~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G 258 (258)
.+++ +| ....++..| ++++|+++ .+|..++.+++|+.|+|++|+|+|
T Consensus 413 ~Lss-IP------~l~~~L~~L-~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 413 RLTS-LP------MLPSGLLSL-SVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred cCCC-CC------cchhhhhhh-hhccCccc-ccChHHhhccCCCeEECCCCCCCc
Confidence 7765 33 222222222 34899998 899999999999999999999986
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.50 E-value=2.1e-13 Score=136.90 Aligned_cols=175 Identities=17% Similarity=0.177 Sum_probs=95.5
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA 149 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~ 149 (258)
+++.++++++...+.+|. +..+++|++|++++|.....+|..++++++|++|+ .++...+.+|..+ ++++|++|+++
T Consensus 635 ~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Ls 712 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLS 712 (1153)
T ss_pred CCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCC
Confidence 455555555443334442 55556666666666554455666666666666666 3333334455433 34444444444
Q ss_pred cccccc--------------------ccc-cccCC-------------------------------CCcceecceeecCC
Q 039201 150 ENNFSG--------------------TLR-SIFNI-------------------------------SSLEFQSSETEKSK 177 (258)
Q Consensus 150 ~n~l~g--------------------~~p-~~~~l-------------------------------~~L~~l~l~L~l~~ 177 (258)
+|...+ .+| .+ .+ ++|+. |++++
T Consensus 713 gc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~----L~Ls~ 787 (1153)
T PLN03210 713 GCSRLKSFPDISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR----LFLSD 787 (1153)
T ss_pred CCCCccccccccCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchh----eeCCC
Confidence 432211 122 11 11 23344 56666
Q ss_pred CccccccCccccCCCCCCeEecCCCcCCccCCCCchhhh----hhcCC----------CCCccc--cccccccccchhhc
Q 039201 178 NRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFIT----LLRNC----------SKLKTL--QYNQLTGTIPDTTG 241 (258)
Q Consensus 178 n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~----~l~~l----------~~L~~L--~~N~l~g~ip~~l~ 241 (258)
|...+.+|.+++++++|+.|++++|..-+.+|.....+. .+.++ ++|+.| ++|.++ .+|.++.
T Consensus 788 n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~ 866 (1153)
T PLN03210 788 IPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIE 866 (1153)
T ss_pred CCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHHHh
Confidence 666667888888888888888887765445554321100 01111 123333 667776 6788888
Q ss_pred CCCCCCeEeccC
Q 039201 242 ELRNLQAPDLSE 253 (258)
Q Consensus 242 ~l~~L~~L~Ls~ 253 (258)
.+++|++|++++
T Consensus 867 ~l~~L~~L~L~~ 878 (1153)
T PLN03210 867 KFSNLSFLDMNG 878 (1153)
T ss_pred cCCCCCEEECCC
Confidence 888888888876
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.48 E-value=3.8e-15 Score=128.20 Aligned_cols=83 Identities=20% Similarity=0.341 Sum_probs=62.6
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc--CCCccCCCCCc-ccCCCCCCCEEE
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI--GGYRLGGKIPE-SLGQLGSINYLI 147 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~--~~n~l~g~ip~-~~~~l~~L~~L~ 147 (258)
..+.|+|..|+++...|.+|..+++||.||||.|+++-.-|..|..+++|.+|. ++|+++ .+|. .|++|..|+.|.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence 688999999999876667999999999999999999977788899999887775 657776 3443 344555444444
Q ss_pred ccccccc
Q 039201 148 LAENNFS 154 (258)
Q Consensus 148 L~~n~l~ 154 (258)
+.-|++.
T Consensus 147 lNan~i~ 153 (498)
T KOG4237|consen 147 LNANHIN 153 (498)
T ss_pred cChhhhc
Confidence 4444443
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.47 E-value=8.5e-15 Score=126.97 Aligned_cols=182 Identities=25% Similarity=0.299 Sum_probs=132.0
Q ss_pred CcEEEEEcCCCCCcccCCccCCCCCC---CCEEEccCCCCcC----CCCcccCCC-CCCcEEc-CCCccCCC----CCcc
Q 039201 70 PRVTKLDLRSKSIGGFLSPFVGNPSF---VRVIVLANNSYYG----EIPNEVGCL-SRLETLI-GGYRLGGK----IPES 136 (258)
Q Consensus 70 ~~v~~l~l~~~~l~g~lp~~~~~l~~---L~~L~Ls~n~l~g----~~p~~l~~l-~~L~~L~-~~n~l~g~----ip~~ 136 (258)
++++.++++++.+.+..+..+..+.. |++|++++|.+.+ .+...+..+ ++|+.|+ ++|.+++. ++..
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 48999999999998666665555555 9999999999873 233445566 8899999 77887743 3345
Q ss_pred cCCCCCCCEEEccccccccc----cc-cccCCCCcceecceeecCCCccccc----cCccccCCCCCCeEecCCCcCCcc
Q 039201 137 LGQLGSINYLILAENNFSGT----LR-SIFNISSLEFQSSETEKSKNRFTGK----LGIDFNSLINLARLNLGQKNLGIG 207 (258)
Q Consensus 137 ~~~l~~L~~L~L~~n~l~g~----~p-~~~~l~~L~~l~l~L~l~~n~~~g~----ip~~~~~l~~L~~L~ls~N~l~g~ 207 (258)
+..+++|++|++++|.+++. ++ .+..+++|++ +++++|.+.+. ++..+..+++|++|++++|.+++.
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~----L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~ 236 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEV----LDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA 236 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCE----EeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH
Confidence 67788999999999999842 33 4556679999 99999988643 445567788999999999998863
Q ss_pred CCCCchhhhhhc-CCCCCccc--cccccc----cccchhhcCCCCCCeEeccCCcCC
Q 039201 208 TTSDLDFITLLR-NCSKLKTL--QYNQLT----GTIPDTTGELRNLQAPDLSENNLN 257 (258)
Q Consensus 208 ~p~~~~~~~~l~-~l~~L~~L--~~N~l~----g~ip~~l~~l~~L~~L~Ls~N~l~ 257 (258)
.... +...+. ..+.|+.| ++|.++ +.+...+..+++|+++++++|.++
T Consensus 237 ~~~~--l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 237 GAAA--LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HHHH--HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 1100 111111 13566666 788887 245566777789999999999886
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.46 E-value=3.4e-15 Score=139.81 Aligned_cols=169 Identities=27% Similarity=0.379 Sum_probs=107.2
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA 149 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~ 149 (258)
.++.++++.+++++ +|+.++.+.+|+.++...|++. .+|..+...++|++|+ ..|.+. .+|+...+++.|++|+|.
T Consensus 242 nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred cceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeeh
Confidence 45666666666653 4566777777777777777663 4555555555555555 333333 455555556666666666
Q ss_pred ccccccccc---------------------------------------------------cccCCCCcceecceeecCCC
Q 039201 150 ENNFSGTLR---------------------------------------------------SIFNISSLEFQSSETEKSKN 178 (258)
Q Consensus 150 ~n~l~g~~p---------------------------------------------------~~~~l~~L~~l~l~L~l~~n 178 (258)
.|++. .+| .+-++.+|+. |+|++|
T Consensus 319 ~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKV----LhLsyN 393 (1081)
T KOG0618|consen 319 SNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKV----LHLSYN 393 (1081)
T ss_pred hcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceee----eeeccc
Confidence 66554 222 2333334444 677777
Q ss_pred ccccccCc-cccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCc
Q 039201 179 RFTGKLGI-DFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENN 255 (258)
Q Consensus 179 ~~~g~ip~-~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 255 (258)
++. ++|+ .+.++..|++|+||+|+++. +|..+.++..|+.| .+|++. ..| ++..++.|+++|++.|+
T Consensus 394 rL~-~fpas~~~kle~LeeL~LSGNkL~~-------Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 394 RLN-SFPASKLRKLEELEELNLSGNKLTT-------LPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNN 463 (1081)
T ss_pred ccc-cCCHHHHhchHHhHHHhcccchhhh-------hhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccch
Confidence 765 4444 35666777777777777765 67778888888877 667776 677 78888888999998888
Q ss_pred CC
Q 039201 256 LN 257 (258)
Q Consensus 256 l~ 257 (258)
|+
T Consensus 464 L~ 465 (1081)
T KOG0618|consen 464 LS 465 (1081)
T ss_pred hh
Confidence 75
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.45 E-value=3.1e-13 Score=128.92 Aligned_cols=158 Identities=22% Similarity=0.310 Sum_probs=87.5
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA 149 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~ 149 (258)
.++.|++++|+++ .+|..+. .+|++|++++|.++ .+|..+. .+|+.|+ ++|++. .+|..+. ++|++|+++
T Consensus 200 ~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 200 QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLF 270 (754)
T ss_pred CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECc
Confidence 6788999999887 4666543 47888888888877 5665443 3566666 445444 5555443 356666666
Q ss_pred ccccccccc-cccCCCCcceecceeecCCCccccccCcccc-------------------CCCCCCeEecCCCcCCccCC
Q 039201 150 ENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFN-------------------SLINLARLNLGQKNLGIGTT 209 (258)
Q Consensus 150 ~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~-------------------~l~~L~~L~ls~N~l~g~~p 209 (258)
+|+++ .+| .+. ++|++ |++++|+++ .+|..+. -.++|+.|++++|.+++ +|
T Consensus 271 ~N~L~-~LP~~l~--~sL~~----L~Ls~N~Lt-~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP 341 (754)
T PRK15370 271 HNKIS-CLPENLP--EELRY----LSVYDNSIR-TLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LP 341 (754)
T ss_pred CCccC-ccccccC--CCCcE----EECCCCccc-cCcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc-CC
Confidence 66665 345 332 34555 555555544 2332211 11345555555555543 22
Q ss_pred CCchhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201 210 SDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLN 257 (258)
Q Consensus 210 ~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 257 (258)
. .+. ++|+.| ++|+++ .+|..+. ++|+.|++++|+|+
T Consensus 342 ~------~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt 380 (754)
T PRK15370 342 A------SLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT 380 (754)
T ss_pred h------hhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC
Confidence 2 111 234444 666666 4565542 46677777777664
No 19
>PLN03150 hypothetical protein; Provisional
Probab=99.45 E-value=2.1e-13 Score=128.71 Aligned_cols=110 Identities=27% Similarity=0.456 Sum_probs=100.6
Q ss_pred CCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecce
Q 039201 95 FVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSE 172 (258)
Q Consensus 95 ~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~ 172 (258)
.++.|+|++|.+.|.+|..++++++|++|+ ++|.+.|.+|+.++.+++|++|+|++|+++|.+| .++++++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~---- 494 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI---- 494 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCE----
Confidence 478899999999999999999999999999 8899999999999999999999999999999999 8999999999
Q ss_pred eecCCCccccccCccccCC-CCCCeEecCCCcCCccC
Q 039201 173 TEKSKNRFTGKLGIDFNSL-INLARLNLGQKNLGIGT 208 (258)
Q Consensus 173 L~l~~n~~~g~ip~~~~~l-~~L~~L~ls~N~l~g~~ 208 (258)
|++++|+++|.+|..++.. .++..+++.+|......
T Consensus 495 L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 495 LNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred EECcCCcccccCChHHhhccccCceEEecCCccccCC
Confidence 9999999999999988764 46788999988754433
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.43 E-value=1.3e-14 Score=125.78 Aligned_cols=181 Identities=21% Similarity=0.207 Sum_probs=129.4
Q ss_pred cEEEEEcCCCCCcc------cCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCC---CcEEc-CCCccCC----CCCcc
Q 039201 71 RVTKLDLRSKSIGG------FLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSR---LETLI-GGYRLGG----KIPES 136 (258)
Q Consensus 71 ~v~~l~l~~~~l~g------~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~---L~~L~-~~n~l~g----~ip~~ 136 (258)
.++.++++++.+.+ .++..+..+++|++|++++|.+.+..+..+..+.+ |++|+ ++|.+++ .+...
T Consensus 52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~ 131 (319)
T cd00116 52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG 131 (319)
T ss_pred CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHH
Confidence 57888888887752 23456777889999999999988666665655555 99998 6677763 23345
Q ss_pred cCCC-CCCCEEEccccccccc----cc-cccCCCCcceecceeecCCCccccc----cCccccCCCCCCeEecCCCcCCc
Q 039201 137 LGQL-GSINYLILAENNFSGT----LR-SIFNISSLEFQSSETEKSKNRFTGK----LGIDFNSLINLARLNLGQKNLGI 206 (258)
Q Consensus 137 ~~~l-~~L~~L~L~~n~l~g~----~p-~~~~l~~L~~l~l~L~l~~n~~~g~----ip~~~~~l~~L~~L~ls~N~l~g 206 (258)
+..+ ++|+.|++++|.+++. ++ .+..+++|++ +++++|.+++. ++..+...++|++|++++|.+++
T Consensus 132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~----L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 207 (319)
T cd00116 132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKE----LNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTD 207 (319)
T ss_pred HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCE----EECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccCh
Confidence 5666 8899999999999843 23 4556778999 88999988743 44455667799999999998875
Q ss_pred cCCCCchhhhhhcCCCCCccc--cccccccccchhhcC-----CCCCCeEeccCCcCC
Q 039201 207 GTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGE-----LRNLQAPDLSENNLN 257 (258)
Q Consensus 207 ~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~-----l~~L~~L~Ls~N~l~ 257 (258)
.... .+...+..+++|++| ++|++++..+..+.. .+.|+.|++++|.++
T Consensus 208 ~~~~--~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 208 EGAS--ALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHH--HHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 3211 134456677778887 888888644444322 378999999999885
No 21
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.42 E-value=1.6e-12 Score=130.50 Aligned_cols=125 Identities=22% Similarity=0.180 Sum_probs=81.8
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA 149 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~ 149 (258)
+++.|+++++.+. .++..+..+++|++|+|+++...+.+|. ++.+++|++|+ .+|.....+|..++++++|++|+++
T Consensus 612 ~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 612 NLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred CCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 5666777666664 4566667777777888777655556664 67777777777 4555556777777888888888887
Q ss_pred ccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCC
Q 039201 150 ENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLG 205 (258)
Q Consensus 150 ~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~ 205 (258)
+|..-+.+| .+ ++++|++ +++++|...+.+|.. ..+|++|++++|.++
T Consensus 690 ~c~~L~~Lp~~i-~l~sL~~----L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~ 738 (1153)
T PLN03210 690 RCENLEILPTGI-NLKSLYR----LNLSGCSRLKSFPDI---STNISWLDLDETAIE 738 (1153)
T ss_pred CCCCcCccCCcC-CCCCCCE----EeCCCCCCccccccc---cCCcCeeecCCCccc
Confidence 765555677 43 6777777 666666554445432 235556666666543
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.42 E-value=1.7e-14 Score=135.21 Aligned_cols=169 Identities=23% Similarity=0.302 Sum_probs=126.9
Q ss_pred cEEEEEcCCCCCcc----------------------cCCccCCCCCCCCEEEccCCCCcCCCCccc-CC-----------
Q 039201 71 RVTKLDLRSKSIGG----------------------FLSPFVGNPSFVRVIVLANNSYYGEIPNEV-GC----------- 116 (258)
Q Consensus 71 ~v~~l~l~~~~l~g----------------------~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l-~~----------- 116 (258)
.|+.++...|.++. .+|+....++.|++|||..|++. .+|+.+ .-
T Consensus 265 nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s 343 (1081)
T KOG0618|consen 265 NLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVS 343 (1081)
T ss_pred cceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhh
Confidence 57777777666531 35566666777777777777664 444321 10
Q ss_pred --------------CCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc--cccCCCCcceecceeecCCCc
Q 039201 117 --------------LSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR--SIFNISSLEFQSSETEKSKNR 179 (258)
Q Consensus 117 --------------l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p--~~~~l~~L~~l~l~L~l~~n~ 179 (258)
.+.|+.|+ .+|.++...-+-+.+.++|+.|+|++|++. .+| .+.++..|++ |++++|+
T Consensus 344 ~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~Lee----L~LSGNk 418 (1081)
T KOG0618|consen 344 SNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEE----LNLSGNK 418 (1081)
T ss_pred hccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHH----Hhcccch
Confidence 01111111 566777776666889999999999999997 788 6789999999 9999999
Q ss_pred cccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--ccccccc-ccchhhcCCCCCCeEeccCCc
Q 039201 180 FTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTG-TIPDTTGELRNLQAPDLSENN 255 (258)
Q Consensus 180 ~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g-~ip~~l~~l~~L~~L~Ls~N~ 255 (258)
++ .+|..+.++..|++|...+|.+.- +| ++.+++.|+.+ +.|+|+- .+|.... .++|++||+++|.
T Consensus 419 L~-~Lp~tva~~~~L~tL~ahsN~l~~-------fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 419 LT-TLPDTVANLGRLHTLRAHSNQLLS-------FP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNT 487 (1081)
T ss_pred hh-hhhHHHHhhhhhHHHhhcCCceee-------ch-hhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCc
Confidence 98 899999999999999999999975 45 89999999888 8999885 3444433 3899999999996
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.37 E-value=1e-14 Score=130.51 Aligned_cols=167 Identities=24% Similarity=0.305 Sum_probs=134.5
Q ss_pred EEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccc
Q 039201 72 VTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAE 150 (258)
Q Consensus 72 v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~ 150 (258)
.+..|++.|++. ++|..+..+..|+.+.|+.|.+. .+|..++++..|.+|| +.|+++ .+|..++.|+ |+.|.+++
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence 456778888876 67888888888888888888887 7888888888888888 777776 6788888777 88888888
Q ss_pred cccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--
Q 039201 151 NNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL-- 227 (258)
Q Consensus 151 n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L-- 227 (258)
|+++ .+| .++..+.|.. +|.+.|.+. .+|+.++.+.+|+.|.+..|++.. +|+++..++ |..|
T Consensus 153 Nkl~-~lp~~ig~~~tl~~----ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-------lp~El~~Lp-Li~lDf 218 (722)
T KOG0532|consen 153 NKLT-SLPEEIGLLPTLAH----LDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-------LPEELCSLP-LIRLDF 218 (722)
T ss_pred Cccc-cCCcccccchhHHH----hhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-------CCHHHhCCc-eeeeec
Confidence 8886 677 7887777888 888888887 778888888888888888888876 677777554 4445
Q ss_pred cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201 228 QYNQLTGTIPDTTGELRNLQAPDLSENNLN 257 (258)
Q Consensus 228 ~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 257 (258)
++|+++ .||-.|.+|+.||+|-|.+|.|+
T Consensus 219 ScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 219 SCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred ccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 888888 88999999999999999988875
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.32 E-value=1.1e-11 Score=118.24 Aligned_cols=70 Identities=19% Similarity=0.295 Sum_probs=33.2
Q ss_pred EEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccc
Q 039201 74 KLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENN 152 (258)
Q Consensus 74 ~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~ 152 (258)
.|+++.++++ .+|+.+. .+|+.|++++|+++ .+|. .+++|++|+ ++|+++ .+|.. .++|++|++++|.
T Consensus 205 ~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 205 VLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred EEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCc
Confidence 4555555555 3554443 24555555555555 3443 134555555 444444 33432 2344444444444
Q ss_pred cc
Q 039201 153 FS 154 (258)
Q Consensus 153 l~ 154 (258)
++
T Consensus 274 L~ 275 (788)
T PRK15387 274 LT 275 (788)
T ss_pred hh
Confidence 43
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.30 E-value=2.3e-12 Score=115.38 Aligned_cols=169 Identities=31% Similarity=0.411 Sum_probs=120.6
Q ss_pred cEEEEEcCCCCCcccCCccCCCCC-CCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEc
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPS-FVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLIL 148 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~-~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L 148 (258)
.++.+++.++.++ .+++....+. +|++|++++|.+. .+|..+..+++|+.|+ +.|.+. .+|...+.+++|+.|++
T Consensus 117 ~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 117 NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL 193 (394)
T ss_pred ceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence 4677777777776 5666666664 7888888887776 5665677777788777 555555 56666667777888888
Q ss_pred cccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc
Q 039201 149 AENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL 227 (258)
Q Consensus 149 ~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L 227 (258)
++|+++ .+| .+.....|++ +.+++|+.. .++..+.++.++..+.+.+|.+.. .+..++.++.+++|
T Consensus 194 s~N~i~-~l~~~~~~~~~L~~----l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-------~~~~~~~l~~l~~L 260 (394)
T COG4886 194 SGNKIS-DLPPEIELLSALEE----LDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-------LPESIGNLSNLETL 260 (394)
T ss_pred cCCccc-cCchhhhhhhhhhh----hhhcCCcce-ecchhhhhcccccccccCCceeee-------ccchhcccccccee
Confidence 888776 666 4455555777 777777533 455667777777777777777764 24667777777777
Q ss_pred --cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201 228 --QYNQLTGTIPDTTGELRNLQAPDLSENNLN 257 (258)
Q Consensus 228 --~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 257 (258)
++|+++ .++. ++.+.+++.|++++|.++
T Consensus 261 ~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 261 DLSNNQIS-SISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred cccccccc-cccc-ccccCccCEEeccCcccc
Confidence 788887 5665 888889999999988764
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.17 E-value=8.1e-13 Score=118.57 Aligned_cols=149 Identities=26% Similarity=0.371 Sum_probs=129.6
Q ss_pred CCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcce
Q 039201 91 GNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEF 168 (258)
Q Consensus 91 ~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~ 168 (258)
-.++.-...|++.|++. ++|.+.+.+..|+.+. ..|.+. .||+.++++..|+++||+.|+++ .+| .++.++ |+.
T Consensus 72 ~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkv 147 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKV 147 (722)
T ss_pred ccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-cee
Confidence 45666677899999998 8999998888888887 445544 79999999999999999999998 777 888877 788
Q ss_pred ecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCCC
Q 039201 169 QSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNL 246 (258)
Q Consensus 169 l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L 246 (258)
+-+++|+++ .+|..++....|..||.+.|.+.. .|+.++.+.+|+.| ..|++. .+|+++..|+ |
T Consensus 148 ----li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~s-------lpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-L 213 (722)
T KOG0532|consen 148 ----LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQS-------LPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-L 213 (722)
T ss_pred ----EEEecCccc-cCCcccccchhHHHhhhhhhhhhh-------chHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-e
Confidence 888999987 899999999999999999999976 78999999999988 788988 8999999764 9
Q ss_pred CeEeccCCcCC
Q 039201 247 QAPDLSENNLN 257 (258)
Q Consensus 247 ~~L~Ls~N~l~ 257 (258)
..||+++|+++
T Consensus 214 i~lDfScNkis 224 (722)
T KOG0532|consen 214 IRLDFSCNKIS 224 (722)
T ss_pred eeeecccCcee
Confidence 99999999975
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.15 E-value=2.9e-11 Score=108.27 Aligned_cols=167 Identities=27% Similarity=0.386 Sum_probs=134.8
Q ss_pred EEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCC-CCcEEc-CCCccCCCCCcccCCCCCCCEEEcccc
Q 039201 74 KLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLS-RLETLI-GGYRLGGKIPESLGQLGSINYLILAEN 151 (258)
Q Consensus 74 ~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~-~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n 151 (258)
.+++..+.+... ...+..++.++.|++.+|.++ .+|+....++ +|++|+ ++|.+. .+|..++.+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 466666666333 234566688999999999998 7888788885 999999 666665 67778999999999999999
Q ss_pred ccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--c
Q 039201 152 NFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--Q 228 (258)
Q Consensus 152 ~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~ 228 (258)
+++ .+| ..+..+.|+. +++++|+++ .+|........|+++.+++|.... .+..+.+++.+..+ .
T Consensus 174 ~l~-~l~~~~~~~~~L~~----L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~-------~~~~~~~~~~l~~l~l~ 240 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNN----LDLSGNKIS-DLPPEIELLSALEELDLSNNSIIE-------LLSSLSNLKNLSGLELS 240 (394)
T ss_pred hhh-hhhhhhhhhhhhhh----eeccCCccc-cCchhhhhhhhhhhhhhcCCccee-------cchhhhhcccccccccC
Confidence 998 666 6668899999 999999998 888877777889999999996332 45667777776666 7
Q ss_pred ccccccccchhhcCCCCCCeEeccCCcCC
Q 039201 229 YNQLTGTIPDTTGELRNLQAPDLSENNLN 257 (258)
Q Consensus 229 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 257 (258)
+|++. .+|..++.++++++|++++|+++
T Consensus 241 ~n~~~-~~~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 241 NNKLE-DLPESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred Cceee-eccchhccccccceecccccccc
Confidence 78877 55888999999999999999875
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.95 E-value=6.3e-10 Score=88.20 Aligned_cols=131 Identities=24% Similarity=0.275 Sum_probs=47.9
Q ss_pred CCCCCCCEEEccCCCCcCCCCcccC-CCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-cc-cCCCCc
Q 039201 91 GNPSFVRVIVLANNSYYGEIPNEVG-CLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SI-FNISSL 166 (258)
Q Consensus 91 ~~l~~L~~L~Ls~n~l~g~~p~~l~-~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~-~~l~~L 166 (258)
.+...+++|+|++|.++ .|. .++ .+.+|+.|+ +.|.+. .++ .+..+++|++|++++|+++ .++ .+ ..+++|
T Consensus 16 ~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred ccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence 34445666677766665 232 243 455666666 444444 333 3667888999999999998 444 44 358889
Q ss_pred ceecceeecCCCccccc-cCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccccccccc
Q 039201 167 EFQSSETEKSKNRFTGK-LGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTLQYNQLT 233 (258)
Q Consensus 167 ~~l~l~L~l~~n~~~g~-ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L~~N~l~ 233 (258)
++ |++++|++... --..++.+++|++|++.+|.++.. + .+ -...+..+++|+.|++..++
T Consensus 91 ~~----L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~-~Y-R~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 91 QE----LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-K-NY-RLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp -E----EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-T-TH-HHHHHHH-TT-SEETTEETT
T ss_pred CE----EECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-h-hH-HHHHHHHcChhheeCCEEcc
Confidence 99 88899988631 124467888999999999988753 1 11 23456777778777555554
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.84 E-value=3.3e-09 Score=84.10 Aligned_cols=124 Identities=23% Similarity=0.314 Sum_probs=50.9
Q ss_pred cCCCCCCcEEc-CCCccCCCCCcccC-CCCCCCEEEccccccccccccccCCCCcceecceeecCCCccccccCccc-cC
Q 039201 114 VGCLSRLETLI-GGYRLGGKIPESLG-QLGSINYLILAENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDF-NS 190 (258)
Q Consensus 114 l~~l~~L~~L~-~~n~l~g~ip~~~~-~l~~L~~L~L~~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~-~~ 190 (258)
+.+..++++|+ .+|.++ .| +.++ .+.+|+.|++++|.++ .++.+..++.|++ |++++|+++ .++..+ ..
T Consensus 15 ~~n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~-~l~~l~~L~~L~~----L~L~~N~I~-~i~~~l~~~ 86 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQIT-KLEGLPGLPRLKT----LDLSNNRIS-SISEGLDKN 86 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---TT----TT--E----EE--SS----S-CHHHHHH
T ss_pred cccccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCc-cccCccChhhhhh----cccCCCCCC-ccccchHHh
Confidence 44566788888 666655 34 3465 5889999999999998 5666777899999 999999998 455444 46
Q ss_pred CCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccch----hhcCCCCCCeEec
Q 039201 191 LINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPD----TTGELRNLQAPDL 251 (258)
Q Consensus 191 l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~----~l~~l~~L~~L~L 251 (258)
+++|++|++++|.+... .....++.+++|+.| .+|.++.. +. .+..+|+|+.||-
T Consensus 87 lp~L~~L~L~~N~I~~l-----~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDL-----NELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TT--EEE-TTS---SC-----CCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred CCcCCEEECcCCcCCCh-----HHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence 89999999999999763 234567777888777 78888743 32 3677899999875
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.82 E-value=3.9e-10 Score=94.74 Aligned_cols=103 Identities=17% Similarity=0.268 Sum_probs=46.9
Q ss_pred CCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccccccCCCCcceecce
Q 039201 94 SFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLRSIFNISSLEFQSSE 172 (258)
Q Consensus 94 ~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p~~~~l~~L~~l~l~ 172 (258)
..|+++|||.|.++ .+..+..-++.++.|+ +.|.+. .+ ..+..+++|+.|||++|.++...-+-.++.+++.
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKt---- 356 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKT---- 356 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhHhhhhhHhhhcCEee----
Confidence 44555566655554 4444444455555555 444443 12 1244455555555555554421112223344444
Q ss_pred eecCCCccccccCccccCCCCCCeEecCCCcCC
Q 039201 173 TEKSKNRFTGKLGIDFNSLINLARLNLGQKNLG 205 (258)
Q Consensus 173 L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~ 205 (258)
+.++.|.+. . -+.++++-+|..||+++|++.
T Consensus 357 L~La~N~iE-~-LSGL~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 357 LKLAQNKIE-T-LSGLRKLYSLVNLDLSSNQIE 387 (490)
T ss_pred eehhhhhHh-h-hhhhHhhhhheeccccccchh
Confidence 444555442 1 122444445555555555544
No 31
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.76 E-value=1.3e-09 Score=94.41 Aligned_cols=92 Identities=22% Similarity=0.180 Sum_probs=69.6
Q ss_pred cCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccc-cccc
Q 039201 77 LRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAE-NNFS 154 (258)
Q Consensus 77 l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~-n~l~ 154 (258)
-++.+++ ++|..+. ..-..++|..|+++-.-|..|+.+++|+.|| +.|+++..-|..|.++++|..|.+.+ |+++
T Consensus 53 Cr~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 53 CRGKGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred ccCCCcc-cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 3444454 4554332 2446789999999844446789999999999 88999988899999999998888877 8887
Q ss_pred cccc--cccCCCCcceecce
Q 039201 155 GTLR--SIFNISSLEFQSSE 172 (258)
Q Consensus 155 g~~p--~~~~l~~L~~l~l~ 172 (258)
.+| .|+++.+++.|.+.
T Consensus 130 -~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 130 -DLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred -hhhhhHhhhHHHHHHHhcC
Confidence 677 78888888775554
No 32
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.75 E-value=9.6e-09 Score=67.10 Aligned_cols=60 Identities=30% Similarity=0.341 Sum_probs=50.3
Q ss_pred CCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcC
Q 039201 141 GSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNL 204 (258)
Q Consensus 141 ~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l 204 (258)
++|++|++++|+++..-+ .+..+++|++ +++++|+++..-|..+..+++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~----L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLET----LDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESE----EEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCE----eEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 578899999999884434 7788999999 89999999877777889999999999998875
No 33
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.72 E-value=1.6e-08 Score=61.18 Aligned_cols=37 Identities=49% Similarity=0.948 Sum_probs=28.1
Q ss_pred hHHHHHHHHHhCC-CCCCCCCCCCCC--CCCccccceeeC
Q 039201 30 KTDHLLAIKSQLQ-DPLGPTSSWKAS--LNLCQWTGVTCS 66 (258)
Q Consensus 30 ~~~aL~~~~~~~~-~~~~~~~~w~~~--~~~c~w~gv~c~ 66 (258)
+.+||++||+++. +|...+.+|... .++|.|.||+|+
T Consensus 4 d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 4 DRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred HHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 4559999999997 576789999987 799999999995
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.6e-09 Score=93.64 Aligned_cols=176 Identities=21% Similarity=0.205 Sum_probs=105.6
Q ss_pred cEEEEEcCCCCCcccCC--ccCCCCCCCCEEEccCCCCcCCCC--cccCCCCCCcEEc-CCCccCCCCCccc-CCCCCCC
Q 039201 71 RVTKLDLRSKSIGGFLS--PFVGNPSFVRVIVLANNSYYGEIP--NEVGCLSRLETLI-GGYRLGGKIPESL-GQLGSIN 144 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp--~~~~~l~~L~~L~Ls~n~l~g~~p--~~l~~l~~L~~L~-~~n~l~g~ip~~~-~~l~~L~ 144 (258)
+++.+.|++..... .+ .....+++++.||||.|-|+...| .....+++|+.|+ +.|.+.-...+.. ..++.|+
T Consensus 122 kL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 122 KLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred hhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 56666666655432 22 356677888888888887764333 2334678888887 6666653333222 2567788
Q ss_pred EEEcccccccc-ccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCC
Q 039201 145 YLILAENNFSG-TLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCS 222 (258)
Q Consensus 145 ~L~L~~n~l~g-~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~ 222 (258)
.|.++.|.++- .+- -...+|+|+. |++..|...+.-......++.|+.|||++|++-... ....++.++
T Consensus 201 ~L~l~~CGls~k~V~~~~~~fPsl~~----L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~-----~~~~~~~l~ 271 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDVQWILLTFPSLEV----LYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD-----QGYKVGTLP 271 (505)
T ss_pred eEEeccCCCCHHHHHHHHHhCCcHHH----hhhhcccccceecchhhhhhHHhhccccCCcccccc-----ccccccccc
Confidence 88888888772 222 3446777887 777777533333333455667788888877765421 224566666
Q ss_pred CCccc--ccccccc-ccchh-----hcCCCCCCeEeccCCcC
Q 039201 223 KLKTL--QYNQLTG-TIPDT-----TGELRNLQAPDLSENNL 256 (258)
Q Consensus 223 ~L~~L--~~N~l~g-~ip~~-----l~~l~~L~~L~Ls~N~l 256 (258)
.|..| +.+.++. .+|+. ...+++|++|++..|++
T Consensus 272 ~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 272 GLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred chhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 66555 4554442 12322 34567777887777775
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.69 E-value=1.6e-09 Score=91.18 Aligned_cols=128 Identities=26% Similarity=0.252 Sum_probs=104.7
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA 149 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~ 149 (258)
.++.+||++|.++ .+.+++.-.+.++.|++|+|.+. .+.. +..+.+|+.|| ++|.++ .+-..-.++-++++|.|+
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence 4678999999886 67888889999999999999997 4444 88899999999 556554 454445678899999999
Q ss_pred ccccccccccccCCCCcceecceeecCCCcccc-ccCccccCCCCCCeEecCCCcCCcc
Q 039201 150 ENNFSGTLRSIFNISSLEFQSSETEKSKNRFTG-KLGIDFNSLINLARLNLGQKNLGIG 207 (258)
Q Consensus 150 ~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g-~ip~~~~~l~~L~~L~ls~N~l~g~ 207 (258)
+|.+. .+..+.++.+|.. +|+++|++.. .-...+++++-|+++.+.+|.+.+.
T Consensus 361 ~N~iE-~LSGL~KLYSLvn----LDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 361 QNKIE-TLSGLRKLYSLVN----LDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhHh-hhhhhHhhhhhee----ccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 99987 4556778889999 9999999852 2345689999999999999999874
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.61 E-value=1.9e-08 Score=97.92 Aligned_cols=175 Identities=21% Similarity=0.309 Sum_probs=101.0
Q ss_pred CcEEEEEcCCCC--CcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEE
Q 039201 70 PRVTKLDLRSKS--IGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYL 146 (258)
Q Consensus 70 ~~v~~l~l~~~~--l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L 146 (258)
+++++|-+.++. +.-...+.|..++.|++|||++|.--+.+|.+++++-+|++|+ +...+. .+|..+++|++|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 356777776665 3322233466788888888888776677888888888888887 444444 778888888888888
Q ss_pred Eccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCc
Q 039201 147 ILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLK 225 (258)
Q Consensus 147 ~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~ 225 (258)
++..+.....+| ....+++|++|.+ ..+....+...-..+.++.+|+.+........ ....+..+.+|.
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l--~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~--------~~e~l~~~~~L~ 693 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRL--PRSALSNDKLLLKELENLEHLENLSITISSVL--------LLEDLLGMTRLR 693 (889)
T ss_pred ccccccccccccchhhhcccccEEEe--eccccccchhhHHhhhcccchhhheeecchhH--------hHhhhhhhHHHH
Confidence 887776655566 5556788888432 11222222233333444555555544322220 111222222222
Q ss_pred cc------cccccccccchhhcCCCCCCeEeccCCcC
Q 039201 226 TL------QYNQLTGTIPDTTGELRNLQAPDLSENNL 256 (258)
Q Consensus 226 ~L------~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 256 (258)
.+ ..+... ..+..++.+.+|+.|.+.....
T Consensus 694 ~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~ 729 (889)
T KOG4658|consen 694 SLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGI 729 (889)
T ss_pred HHhHhhhhcccccc-eeecccccccCcceEEEEcCCC
Confidence 22 122222 4556677788888888766554
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.60 E-value=2.9e-08 Score=64.82 Aligned_cols=57 Identities=33% Similarity=0.475 Sum_probs=22.9
Q ss_pred CCCEEEccCCCCcCCCC-cccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccc
Q 039201 95 FVRVIVLANNSYYGEIP-NEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENN 152 (258)
Q Consensus 95 ~L~~L~Ls~n~l~g~~p-~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~ 152 (258)
+|++|++++|+++ .+| ..+.++++|++|+ ++|.+...-|..+.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4455555555554 222 2223333333333 3333322222334444444444444443
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=6.4e-09 Score=91.19 Aligned_cols=182 Identities=21% Similarity=0.228 Sum_probs=106.3
Q ss_pred CcEEEEEcCCCCCccc--CCccCCCCCCCCEEEccCCCCcCCCCccc-CCCCCCcEEc-CCCccCC-CCCcccCCCCCCC
Q 039201 70 PRVTKLDLRSKSIGGF--LSPFVGNPSFVRVIVLANNSYYGEIPNEV-GCLSRLETLI-GGYRLGG-KIPESLGQLGSIN 144 (258)
Q Consensus 70 ~~v~~l~l~~~~l~g~--lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l-~~l~~L~~L~-~~n~l~g-~ip~~~~~l~~L~ 144 (258)
++|+.|||+.|-+..- +-.....|++|+.|+++.|.+.-...... ..++.|+.|. +.+.++- .+-..+..+|+|+
T Consensus 146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~ 225 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLE 225 (505)
T ss_pred CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHH
Confidence 5899999999876543 23467789999999999998864333222 2466777776 5555541 1122234567888
Q ss_pred EEEccccccccccc-cccCCCCcceecceeecCCCccccccC--ccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCC
Q 039201 145 YLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLG--IDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNC 221 (258)
Q Consensus 145 ~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip--~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l 221 (258)
.|+|..|..-+.-. ....++.|++ |||++|++- ..+ .-.+.++.|..|+++.+.++..--..-+.......+
T Consensus 226 ~L~L~~N~~~~~~~~~~~i~~~L~~----LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f 300 (505)
T KOG3207|consen 226 VLYLEANEIILIKATSTKILQTLQE----LDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF 300 (505)
T ss_pred HhhhhcccccceecchhhhhhHHhh----ccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence 88888775221111 3334566777 777777764 222 336677777777777777654311000011113445
Q ss_pred CCCccc--cccccccccc--hhhcCCCCCCeEeccCCcCC
Q 039201 222 SKLKTL--QYNQLTGTIP--DTTGELRNLQAPDLSENNLN 257 (258)
Q Consensus 222 ~~L~~L--~~N~l~g~ip--~~l~~l~~L~~L~Ls~N~l~ 257 (258)
.+|++| ..|++. ..+ ..+..+.+|+.|.+..|.|+
T Consensus 301 ~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 301 PKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccceeeecccCccc-cccccchhhccchhhhhhccccccc
Confidence 566666 666664 232 22444556666666666553
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.30 E-value=1.6e-07 Score=80.49 Aligned_cols=112 Identities=15% Similarity=0.112 Sum_probs=60.3
Q ss_pred CCCCCCCCEEEccCCCCcCCCCcc----cCCCCCCcEEcCCCccCCCCC--------------cccCCCCCCCEEEcccc
Q 039201 90 VGNPSFVRVIVLANNSYYGEIPNE----VGCLSRLETLIGGYRLGGKIP--------------ESLGQLGSINYLILAEN 151 (258)
Q Consensus 90 ~~~l~~L~~L~Ls~n~l~g~~p~~----l~~l~~L~~L~~~n~l~g~ip--------------~~~~~l~~L~~L~L~~n 151 (258)
+...++|+++|||+|.|.-.-++. +..++.|++|+.+|+=.|+.- .-.+.-++|+++..++|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 344557777777777775433332 345677777774443322211 11234466777777777
Q ss_pred ccccc----cc-cccCCCCcceecceeecCCCccccc----cCccccCCCCCCeEecCCCcCC
Q 039201 152 NFSGT----LR-SIFNISSLEFQSSETEKSKNRFTGK----LGIDFNSLINLARLNLGQKNLG 205 (258)
Q Consensus 152 ~l~g~----~p-~~~~l~~L~~l~l~L~l~~n~~~g~----ip~~~~~l~~L~~L~ls~N~l~ 205 (258)
++... +. .+...+.|+. +.++.|.+.-. +...+..+++|++||+.+|.|+
T Consensus 168 rlen~ga~~~A~~~~~~~~lee----vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEE----VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred ccccccHHHHHHHHHhccccce----EEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 66521 11 2334556666 56666655311 2233456666666666666665
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.29 E-value=2.2e-07 Score=83.93 Aligned_cols=175 Identities=25% Similarity=0.321 Sum_probs=85.5
Q ss_pred EEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccc
Q 039201 72 VTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAE 150 (258)
Q Consensus 72 v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~ 150 (258)
+..+.++.|.+.. +-..+..++.|+.+++.+|.+.. +...+..+.+|++|+ ++|.++ .+. .+..++.|+.|++++
T Consensus 74 l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~-~i~-~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 74 LKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKIT-KLE-GLSTLTLLKELNLSG 149 (414)
T ss_pred HHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccc-ccc-chhhccchhhheecc
Confidence 3444444444432 22235555666666666666652 222245566666666 444433 221 244455566666666
Q ss_pred cccccccccccCCCCcceecceeecCCCccccccCcc-ccCCCCCCeEecCCCcCCccCCCCc--------------hhh
Q 039201 151 NNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGID-FNSLINLARLNLGQKNLGIGTTSDL--------------DFI 215 (258)
Q Consensus 151 n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~-~~~l~~L~~L~ls~N~l~g~~p~~~--------------~~~ 215 (258)
|.++ .++.+..+++|+. +++++|++...-+ . ...+.+++.+++.+|.+.-.-.... ...
T Consensus 150 N~i~-~~~~~~~l~~L~~----l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~ 223 (414)
T KOG0531|consen 150 NLIS-DISGLESLKSLKL----LDLSYNRIVDIEN-DELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKL 223 (414)
T ss_pred Ccch-hccCCccchhhhc----ccCCcchhhhhhh-hhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceec
Confidence 6665 3333444555555 5666666552222 1 3455556666666665432110000 000
Q ss_pred hhhcCCCC--Cccc--cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201 216 TLLRNCSK--LKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLN 257 (258)
Q Consensus 216 ~~l~~l~~--L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 257 (258)
..+..+.. |+.+ ++|.+. .++..+..+.++..+++..|+++
T Consensus 224 ~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 224 EGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred cCcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccc
Confidence 11111111 3333 666665 44456667778888888888765
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.11 E-value=1.7e-06 Score=84.46 Aligned_cols=104 Identities=25% Similarity=0.258 Sum_probs=64.0
Q ss_pred CCCEEEccCCCC-cCCCCc-ccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceec
Q 039201 95 FVRVIVLANNSY-YGEIPN-EVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQS 170 (258)
Q Consensus 95 ~L~~L~Ls~n~l-~g~~p~-~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~ 170 (258)
.|++|-+.+|.- ...++. .|..++.|+.|| ++|.-.+.+|.++++|-+|+||++++..++ .+| .+.++..|.+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~-- 622 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY-- 622 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe--
Confidence 566666666641 123333 355677777777 445555667777777777777777777666 666 6777777777
Q ss_pred ceeecCCCccccccCccccCCCCCCeEecCCCc
Q 039201 171 SETEKSKNRFTGKLGIDFNSLINLARLNLGQKN 203 (258)
Q Consensus 171 l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~ 203 (258)
|++..+.....+|.....+++|++|.+..-.
T Consensus 623 --Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 623 --LNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred --eccccccccccccchhhhcccccEEEeeccc
Confidence 6666655544455555557777777664443
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.09 E-value=7.9e-08 Score=89.32 Aligned_cols=108 Identities=25% Similarity=0.217 Sum_probs=68.4
Q ss_pred cccCCCCCCCEEEccccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchh
Q 039201 135 ESLGQLGSINYLILAENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDF 214 (258)
Q Consensus 135 ~~~~~l~~L~~L~L~~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~ 214 (258)
+++.-++.|+.|+|++|+|+.. ..+..++.|++ ||+++|.++ .+|.--..-.+|+.|.+++|.++.
T Consensus 181 ~SLqll~ale~LnLshNk~~~v-~~Lr~l~~Lkh----LDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~t-------- 246 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKV-DNLRRLPKLKH----LDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTT-------- 246 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhh-HHHHhcccccc----cccccchhc-cccccchhhhhheeeeecccHHHh--------
Confidence 4455567788888888887732 25566777888 778888876 555421112247788888887763
Q ss_pred hhhhcCCCCCccc--ccccccccc-chhhcCCCCCCeEeccCCcC
Q 039201 215 ITLLRNCSKLKTL--QYNQLTGTI-PDTTGELRNLQAPDLSENNL 256 (258)
Q Consensus 215 ~~~l~~l~~L~~L--~~N~l~g~i-p~~l~~l~~L~~L~Ls~N~l 256 (258)
...+.++++|+.| ++|-+.+-- -..+..+..|+.|.|.+|.+
T Consensus 247 L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 247 LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 3456666666666 777766521 12345566777777777765
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.05 E-value=7.2e-07 Score=80.66 Aligned_cols=108 Identities=22% Similarity=0.216 Sum_probs=82.6
Q ss_pred CCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccccccCCCCccee
Q 039201 91 GNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLRSIFNISSLEFQ 169 (258)
Q Consensus 91 ~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p~~~~l~~L~~l 169 (258)
..+..++.+++..|.+. .+-..+..+++|+.|+ ..|.+. .+...+..+++|++|++++|.++ .+..+..++.|+.
T Consensus 69 ~~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~-~i~~l~~l~~L~~- 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKIT-KLEGLSTLTLLKE- 144 (414)
T ss_pred HHhHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccc-cccchhhccchhh-
Confidence 45677788888888886 3334477888999998 556665 45444778999999999999998 4445556677888
Q ss_pred cceeecCCCccccccCccccCCCCCCeEecCCCcCCcc
Q 039201 170 SSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIG 207 (258)
Q Consensus 170 ~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~ 207 (258)
|++++|.++ .+. .+..+..|+.+++++|.+...
T Consensus 145 ---L~l~~N~i~-~~~-~~~~l~~L~~l~l~~n~i~~i 177 (414)
T KOG0531|consen 145 ---LNLSGNLIS-DIS-GLESLKSLKLLDLSYNRIVDI 177 (414)
T ss_pred ---heeccCcch-hcc-CCccchhhhcccCCcchhhhh
Confidence 999999987 333 356689999999999998763
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.96 E-value=1.5e-07 Score=87.51 Aligned_cols=122 Identities=21% Similarity=0.191 Sum_probs=50.6
Q ss_pred EEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCc-ccCCCCCCCEEEccc
Q 039201 73 TKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPE-SLGQLGSINYLILAE 150 (258)
Q Consensus 73 ~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~-~~~~l~~L~~L~L~~ 150 (258)
..++++.|.+. .+.+++.-+++|+.|+|+.|+++. +. .+..|+.|++|| ++|.+. .+|. ....+. |+.|.+++
T Consensus 167 ~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 167 ATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred hhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhc-cccccchhhhh-heeeeecc
Confidence 33344444443 233344444455555555555441 11 334444444544 444443 2221 111222 55555555
Q ss_pred cccccccccccCCCCcceecceeecCCCcccccc-CccccCCCCCCeEecCCCcC
Q 039201 151 NNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKL-GIDFNSLINLARLNLGQKNL 204 (258)
Q Consensus 151 n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~i-p~~~~~l~~L~~L~ls~N~l 204 (258)
|.++ .+-.+.++.+|+. ||+++|-+.+.= -.-++.+..|+.|+|.+|.+
T Consensus 242 N~l~-tL~gie~LksL~~----LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 242 NALT-TLRGIENLKSLYG----LDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cHHH-hhhhHHhhhhhhc----cchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 5544 2223444455555 445555443220 01123344445555555543
No 45
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.95 E-value=2e-06 Score=73.85 Aligned_cols=180 Identities=23% Similarity=0.321 Sum_probs=125.6
Q ss_pred CcEEEEEcCCCCCcccCCc----cCCCCCCCCEEEccCCCCcC----C---------CCcccCCCCCCcEEc-CCCccCC
Q 039201 70 PRVTKLDLRSKSIGGFLSP----FVGNPSFVRVIVLANNSYYG----E---------IPNEVGCLSRLETLI-GGYRLGG 131 (258)
Q Consensus 70 ~~v~~l~l~~~~l~g~lp~----~~~~l~~L~~L~Ls~n~l~g----~---------~p~~l~~l~~L~~L~-~~n~l~g 131 (258)
|+++.+||+.|-+.-.-++ .+...+.|++|.|.+|.+.- . .....+.-+.|+++. .+|++..
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 4899999999988644333 56778999999999998741 1 122234567788888 6666542
Q ss_pred CCC-----cccCCCCCCCEEEccccccc--cc--cc-cccCCCCcceecceeecCCCccccc----cCccccCCCCCCeE
Q 039201 132 KIP-----ESLGQLGSINYLILAENNFS--GT--LR-SIFNISSLEFQSSETEKSKNRFTGK----LGIDFNSLINLARL 197 (258)
Q Consensus 132 ~ip-----~~~~~l~~L~~L~L~~n~l~--g~--~p-~~~~l~~L~~l~l~L~l~~n~~~g~----ip~~~~~l~~L~~L 197 (258)
-+ ..+...+.|+.+.++.|.+. |. +. .+..+++|+. ||+.+|-|+.. +...+..+++|+.|
T Consensus 172 -~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~Lev----Ldl~DNtft~egs~~LakaL~s~~~L~El 246 (382)
T KOG1909|consen 172 -GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEV----LDLRDNTFTLEGSVALAKALSSWPHLREL 246 (382)
T ss_pred -ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCccee----eecccchhhhHHHHHHHHHhcccchheee
Confidence 22 23566789999999999885 32 12 5678899999 99999998633 34456778899999
Q ss_pred ecCCCcCCccCCCCchhhhhhc-CCCCCccc--ccccccc----ccchhhcCCCCCCeEeccCCcC
Q 039201 198 NLGQKNLGIGTTSDLDFITLLR-NCSKLKTL--QYNQLTG----TIPDTTGELRNLQAPDLSENNL 256 (258)
Q Consensus 198 ~ls~N~l~g~~p~~~~~~~~l~-~l~~L~~L--~~N~l~g----~ip~~l~~l~~L~~L~Ls~N~l 256 (258)
+++++.++..- ...+...+. ..++|+.+ .+|.++. .+-..++..+.|..|+|+.|.|
T Consensus 247 ~l~dcll~~~G--a~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 247 NLGDCLLENEG--AIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccccc--HHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 99999887541 111223332 24566666 7887763 2334456678899999999987
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=3e-07 Score=77.46 Aligned_cols=153 Identities=18% Similarity=0.125 Sum_probs=96.1
Q ss_pred CCCEEEccCCCCcCC-CCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcccccccccc--c-cccCCCCccee
Q 039201 95 FVRVIVLANNSYYGE-IPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTL--R-SIFNISSLEFQ 169 (258)
Q Consensus 95 ~L~~L~Ls~n~l~g~-~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~--p-~~~~l~~L~~l 169 (258)
.|++||||+..++.. +-..+..+++|+.|. .++.+.+.|-..+.+=.+|+.|+++.++=-... . -+.+++.|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 477777777666521 222234566666666 666666666666666677777777664311111 1 34456666664
Q ss_pred cce----------------------eecCCCcc---ccccCccccCCCCCCeEecCCCc-CCccCCCCchhhhhhcCCCC
Q 039201 170 SSE----------------------TEKSKNRF---TGKLGIDFNSLINLARLNLGQKN-LGIGTTSDLDFITLLRNCSK 223 (258)
Q Consensus 170 ~l~----------------------L~l~~n~~---~g~ip~~~~~l~~L~~L~ls~N~-l~g~~p~~~~~~~~l~~l~~ 223 (258)
+++ |+++++.- ...+..-..++++|.+|||++|. ++.. ....+-+++.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~------~~~~~~kf~~ 339 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND------CFQEFFKFNY 339 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch------HHHHHHhcch
Confidence 443 55544321 11222224678999999998775 5543 6778889999
Q ss_pred Cccccccccccccchh---hcCCCCCCeEeccC
Q 039201 224 LKTLQYNQLTGTIPDT---TGELRNLQAPDLSE 253 (258)
Q Consensus 224 L~~L~~N~l~g~ip~~---l~~l~~L~~L~Ls~ 253 (258)
|++|+-++-.|.+|.. +...+.|.+||.-+
T Consensus 340 L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 340 LQHLSLSRCYDIIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred heeeehhhhcCCChHHeeeeccCcceEEEEecc
Confidence 9999888777777776 46778899998754
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=1.6e-05 Score=48.14 Aligned_cols=32 Identities=31% Similarity=0.448 Sum_probs=17.8
Q ss_pred eecCCCccccccCccccCCCCCCeEecCCCcCC
Q 039201 173 TEKSKNRFTGKLGIDFNSLINLARLNLGQKNLG 205 (258)
Q Consensus 173 L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~ 205 (258)
|++++|+++ .+|+.++++++|++|++++|.++
T Consensus 6 L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 6 LDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp EEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred EEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 555555555 45555556666666666666555
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.86 E-value=1.4e-05 Score=48.37 Aligned_cols=36 Identities=25% Similarity=0.339 Sum_probs=27.2
Q ss_pred CCCCEEEccccccccccc-cccCCCCcceecceeecCCCccc
Q 039201 141 GSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFT 181 (258)
Q Consensus 141 ~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~ 181 (258)
++|++|++++|+++ .+| .++++++|++ +++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~----L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLET----LNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSE----EEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCE----EEecCCCCC
Confidence 46888888888887 566 5888888888 888888876
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.76 E-value=2.7e-06 Score=64.13 Aligned_cols=127 Identities=20% Similarity=0.286 Sum_probs=68.4
Q ss_pred EEEEEcCCCCCcccCCc---cCCCCCCCCEEEccCCCCcCCCCcccC-CCCCCcEEc-CCCccCCCCCcccCCCCCCCEE
Q 039201 72 VTKLDLRSKSIGGFLSP---FVGNPSFVRVIVLANNSYYGEIPNEVG-CLSRLETLI-GGYRLGGKIPESLGQLGSINYL 146 (258)
Q Consensus 72 v~~l~l~~~~l~g~lp~---~~~~l~~L~~L~Ls~n~l~g~~p~~l~-~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L 146 (258)
...++|+++.+- .++. .+....+|+..+|++|.|. .+|+.+. +.+.+++|+ .+|.++ .+|.++..++.|+.|
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 344555555442 2332 2333344455566666665 4554443 344555555 344444 567777777777777
Q ss_pred Eccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCcc
Q 039201 147 ILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIG 207 (258)
Q Consensus 147 ~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~ 207 (258)
+++.|.+. ..| .+..+.++.. |+..+|... ++|-.+-.-+..-..++.++.+.+.
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~----Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~ 161 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDM----LDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDE 161 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHH----hcCCCCccc-cCcHHHhccccHHHHHhcCCccccc
Confidence 77777776 445 5666666666 666666654 5554432222333334455556554
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.73 E-value=3.6e-06 Score=63.45 Aligned_cols=103 Identities=18% Similarity=0.166 Sum_probs=66.8
Q ss_pred CCCEEEccCCCCcCCCCcccCCCCCCcEE---c-CCCccCCCCCcccC-CCCCCCEEEccccccccccc-cccCCCCcce
Q 039201 95 FVRVIVLANNSYYGEIPNEVGCLSRLETL---I-GGYRLGGKIPESLG-QLGSINYLILAENNFSGTLR-SIFNISSLEF 168 (258)
Q Consensus 95 ~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L---~-~~n~l~g~ip~~~~-~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~ 168 (258)
.+..+||+++.+- .+++....+....+| + ++|.|- .+|+.+. ..+-++.+++++|.++ .+| ++..++.|+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 3455777777663 455544444444444 3 556555 4555554 4456777777777776 677 7777777777
Q ss_pred ecceeecCCCccccccCccccCCCCCCeEecCCCcCC
Q 039201 169 QSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLG 205 (258)
Q Consensus 169 l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~ 205 (258)
++++.|.+. ..|..+..+.++..|+..+|...
T Consensus 105 ----lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 105 ----LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred ----cccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 777777776 56666666777777777777654
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.36 E-value=0.00046 Score=55.45 Aligned_cols=101 Identities=24% Similarity=0.283 Sum_probs=45.9
Q ss_pred CCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccc--cccccccCCCCcceecce
Q 039201 96 VRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFS--GTLRSIFNISSLEFQSSE 172 (258)
Q Consensus 96 L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~--g~~p~~~~l~~L~~l~l~ 172 (258)
...+||++|.+. .++ .+..+++|.+|. .+|+++..-|.--.-+++|..|.|.+|++. |.+-.+..+++|++
T Consensus 44 ~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~---- 117 (233)
T KOG1644|consen 44 FDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY---- 117 (233)
T ss_pred cceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce----
Confidence 344555555543 222 234455555555 444444222221223455666666666655 22223445556666
Q ss_pred eecCCCcccccc---CccccCCCCCCeEecCCC
Q 039201 173 TEKSKNRFTGKL---GIDFNSLINLARLNLGQK 202 (258)
Q Consensus 173 L~l~~n~~~g~i---p~~~~~l~~L~~L~ls~N 202 (258)
|.+-+|..+..- --.+..+++|++||.+.-
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 555555543110 001345566666665443
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=9.9e-05 Score=62.60 Aligned_cols=177 Identities=19% Similarity=0.185 Sum_probs=98.9
Q ss_pred cEEEEEcCCCCCcc--cCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEcCCC-ccC-CCCCcccCCCCCCCEE
Q 039201 71 RVTKLDLRSKSIGG--FLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLIGGY-RLG-GKIPESLGQLGSINYL 146 (258)
Q Consensus 71 ~v~~l~l~~~~l~g--~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~~~n-~l~-g~ip~~~~~l~~L~~L 146 (258)
+|+.+||.+|.++. .+...+.++++|++|+++.|.+...|-..-..+.+|++|-.++ .+. ...-..+..+|.++.|
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel 151 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL 151 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence 78999999998863 3445678999999999999988754432213456777775222 111 0122345677888888
Q ss_pred Eccccccccc-cc--cccCC-CCcceecce----------------------eecCCCccccc-cCccccCCCCCCeEec
Q 039201 147 ILAENNFSGT-LR--SIFNI-SSLEFQSSE----------------------TEKSKNRFTGK-LGIDFNSLINLARLNL 199 (258)
Q Consensus 147 ~L~~n~l~g~-~p--~~~~l-~~L~~l~l~----------------------L~l~~n~~~g~-ip~~~~~l~~L~~L~l 199 (258)
.++.|++... +. ..... +.+++++.. +.+..|.+... --.....++.+..|+|
T Consensus 152 HmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL 231 (418)
T KOG2982|consen 152 HMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNL 231 (418)
T ss_pred hhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhh
Confidence 8888844311 10 11111 122221110 22222222100 0011233455566777
Q ss_pred CCCcCCccCCCCchhhhhhcCCCCCccc--ccccccccc----chh--hcCCCCCCeEecc
Q 039201 200 GQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTI----PDT--TGELRNLQAPDLS 252 (258)
Q Consensus 200 s~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~i----p~~--l~~l~~L~~L~Ls 252 (258)
+.|++.. |.....+.+++.|+.| ++|.+..++ +.. ++++++++.|+=+
T Consensus 232 ~~~~ids-----wasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 232 GANNIDS-----WASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred ccccccc-----HHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 7777653 4566778888888887 666665433 221 5778888887643
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.30 E-value=9.4e-05 Score=62.00 Aligned_cols=82 Identities=21% Similarity=0.363 Sum_probs=43.8
Q ss_pred cEEEEEcCCCCCccc----CCccCCCCCCCCEEEccCCCCcCC----CCc-------ccCCCCCCcEEc-CCCccCCCCC
Q 039201 71 RVTKLDLRSKSIGGF----LSPFVGNPSFVRVIVLANNSYYGE----IPN-------EVGCLSRLETLI-GGYRLGGKIP 134 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~----lp~~~~~l~~L~~L~Ls~n~l~g~----~p~-------~l~~l~~L~~L~-~~n~l~g~ip 134 (258)
.++.++|++|.+.-. +...|++-.+|+..++++- ++|. +|+ .+-+|++|+..+ +.|.|.-..|
T Consensus 31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 567777777776432 3345666667777776653 3332 222 233555555555 5555554444
Q ss_pred cc----cCCCCCCCEEEcccccc
Q 039201 135 ES----LGQLGSINYLILAENNF 153 (258)
Q Consensus 135 ~~----~~~l~~L~~L~L~~n~l 153 (258)
+. +..-..|.+|.+++|.+
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCC
Confidence 33 23345555666655544
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.30 E-value=0.00049 Score=61.52 Aligned_cols=71 Identities=20% Similarity=0.211 Sum_probs=44.8
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA 149 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~ 149 (258)
..+.|+++++.+. .+|. -..+|++|.++++.--..+|..+ ..+|++|+ .+|.....+|+ +|++|+++
T Consensus 53 ~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~ 120 (426)
T PRK15386 53 ASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLEIK 120 (426)
T ss_pred CCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEEeC
Confidence 6789999988776 4552 23469999998743323566544 25788888 44423335654 46667776
Q ss_pred cccc
Q 039201 150 ENNF 153 (258)
Q Consensus 150 ~n~l 153 (258)
.+..
T Consensus 121 ~n~~ 124 (426)
T PRK15386 121 GSAT 124 (426)
T ss_pred CCCC
Confidence 6554
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.18 E-value=0.00059 Score=54.82 Aligned_cols=101 Identities=21% Similarity=0.146 Sum_probs=45.6
Q ss_pred CCCEEEccccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCC
Q 039201 142 SINYLILAENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNC 221 (258)
Q Consensus 142 ~L~~L~L~~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l 221 (258)
+...+||++|.+- .++.+..++.|.+ |.+++|+++..-|.--..+++|+.|.+.+|++..- .-...+..|
T Consensus 43 ~~d~iDLtdNdl~-~l~~lp~l~rL~t----Lll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l-----~dl~pLa~~ 112 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KLDNLPHLPRLHT----LLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL-----GDLDPLASC 112 (233)
T ss_pred ccceecccccchh-hcccCCCccccce----EEecCCcceeeccchhhhccccceEEecCcchhhh-----hhcchhccC
Confidence 4445555555543 2333334445555 55555555522222222234455555555554321 112334445
Q ss_pred CCCccc--cccccccc---cchhhcCCCCCCeEecc
Q 039201 222 SKLKTL--QYNQLTGT---IPDTTGELRNLQAPDLS 252 (258)
Q Consensus 222 ~~L~~L--~~N~l~g~---ip~~l~~l~~L~~L~Ls 252 (258)
++|++| -+|+.+.. =--.+..+++|++||++
T Consensus 113 p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 113 PKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred CccceeeecCCchhcccCceeEEEEecCcceEeehh
Confidence 555554 33433311 11124566677777664
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.96 E-value=0.00028 Score=67.56 Aligned_cols=14 Identities=29% Similarity=0.358 Sum_probs=8.8
Q ss_pred CCCCCeEeccCCcC
Q 039201 243 LRNLQAPDLSENNL 256 (258)
Q Consensus 243 l~~L~~L~Ls~N~l 256 (258)
+|+|+.||.|+..+
T Consensus 249 LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 249 LPELRFLDCSGTDI 262 (699)
T ss_pred CccccEEecCCcch
Confidence 56677777666544
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.90 E-value=0.00073 Score=56.77 Aligned_cols=113 Identities=14% Similarity=0.121 Sum_probs=65.2
Q ss_pred cCCCCCCCCEEEccCCCCcCCCCccc----CCCCCCcEEcCCCccCCCCCc--------------ccCCCCCCCEEEccc
Q 039201 89 FVGNPSFVRVIVLANNSYYGEIPNEV----GCLSRLETLIGGYRLGGKIPE--------------SLGQLGSINYLILAE 150 (258)
Q Consensus 89 ~~~~l~~L~~L~Ls~n~l~g~~p~~l----~~l~~L~~L~~~n~l~g~ip~--------------~~~~l~~L~~L~L~~ 150 (258)
.+.++++|+..+||+|.|....|+.+ ++-+.|++|..+|+=-|++.. -..+-|.|++.....
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 45667777777777777766666543 455667777744444443321 123456788888888
Q ss_pred ccccc-ccc----cccCCCCcceecceeecCCCccccc-----cCccccCCCCCCeEecCCCcCC
Q 039201 151 NNFSG-TLR----SIFNISSLEFQSSETEKSKNRFTGK-----LGIDFNSLINLARLNLGQKNLG 205 (258)
Q Consensus 151 n~l~g-~~p----~~~~l~~L~~l~l~L~l~~n~~~g~-----ip~~~~~l~~L~~L~ls~N~l~ 205 (258)
|++.. ..- .+.....|++ +.+..|.+.-. +--.+..+.+|++||++.|.|+
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~----vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKE----VKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred chhccCcHHHHHHHHHhhcCcee----EEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 87762 111 1223345666 66666665411 1112345667777777777765
No 58
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.67 E-value=0.00096 Score=55.47 Aligned_cols=38 Identities=21% Similarity=0.307 Sum_probs=17.1
Q ss_pred CCCCcEEc-CCC--ccCCCCCcccCCCCCCCEEEccccccc
Q 039201 117 LSRLETLI-GGY--RLGGKIPESLGQLGSINYLILAENNFS 154 (258)
Q Consensus 117 l~~L~~L~-~~n--~l~g~ip~~~~~l~~L~~L~L~~n~l~ 154 (258)
|++|+.|. +.| ...+.++.....+++|+++++++|++.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 44444444 333 333333333344455555555555544
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.65 E-value=0.0014 Score=54.57 Aligned_cols=90 Identities=23% Similarity=0.213 Sum_probs=59.4
Q ss_pred cCCCCCCCEEEcccc--ccccccc-cccCCCCcceecceeecCCCcccc--ccCccccCCCCCCeEecCCCcCCccCCCC
Q 039201 137 LGQLGSINYLILAEN--NFSGTLR-SIFNISSLEFQSSETEKSKNRFTG--KLGIDFNSLINLARLNLGQKNLGIGTTSD 211 (258)
Q Consensus 137 ~~~l~~L~~L~L~~n--~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g--~ip~~~~~l~~L~~L~ls~N~l~g~~p~~ 211 (258)
+-.|++|++|.++.| +..+.++ ..-++++|++ +++++|++.- ++++ +..+.+|..|++.+|.-+..- .
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~----l~ls~Nki~~lstl~p-l~~l~nL~~Ldl~n~~~~~l~--d 133 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKV----LNLSGNKIKDLSTLRP-LKELENLKSLDLFNCSVTNLD--D 133 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeE----EeecCCccccccccch-hhhhcchhhhhcccCCccccc--c
Confidence 446788999999999 5566666 4556699999 8999999862 2222 466777888998888766521 0
Q ss_pred chhhhhhcCCCCCcccccccccc
Q 039201 212 LDFITLLRNCSKLKTLQYNQLTG 234 (258)
Q Consensus 212 ~~~~~~l~~l~~L~~L~~N~l~g 234 (258)
. --..+.-+++|++|+..-..|
T Consensus 134 y-re~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 134 Y-REKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred H-HHHHHHHhhhhccccccccCC
Confidence 0 113455567777775544444
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.50 E-value=0.011 Score=53.17 Aligned_cols=110 Identities=15% Similarity=0.126 Sum_probs=57.0
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCcc--CCCCCcccCCCCCCCEEE
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRL--GGKIPESLGQLGSINYLI 147 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l--~g~ip~~~~~l~~L~~L~ 147 (258)
.|+.|.++++.--..+|..+ ...|++|++++|.....+|.. |++|+ ..+.. .+.+|+. |+.|.
T Consensus 73 sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~~n~~~~L~~LPss------Lk~L~ 138 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSLEIKGSATDSIKNVPNG------LTSLS 138 (426)
T ss_pred CCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cceEEeCCCCCcccccCcch------Hhhee
Confidence 68999998754333556544 357899999988333367754 44444 12211 2345543 45555
Q ss_pred cccccccccccccc-CC-CCcceecceeecCCCccccccCccccCCCCCCeEecCCC
Q 039201 148 LAENNFSGTLRSIF-NI-SSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQK 202 (258)
Q Consensus 148 L~~n~l~g~~p~~~-~l-~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N 202 (258)
+.+++..-.. .+. .+ ++|++ |++++|... .+|..+. .+|+.|+++.+
T Consensus 139 I~~~n~~~~~-~lp~~LPsSLk~----L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 139 INSYNPENQA-RIDNLISPSLKT----LSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred cccccccccc-ccccccCCcccE----EEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 5432211000 111 12 46777 666666643 2333222 36777777665
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.39 E-value=0.0018 Score=62.11 Aligned_cols=104 Identities=17% Similarity=0.152 Sum_probs=64.2
Q ss_pred CCCCEEEccccccc-cccc-ccc-CCCCcceecceeecCCCccc-cccCccccCCCCCCeEecCCCcCCccCCCCchhhh
Q 039201 141 GSINYLILAENNFS-GTLR-SIF-NISSLEFQSSETEKSKNRFT-GKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFIT 216 (258)
Q Consensus 141 ~~L~~L~L~~n~l~-g~~p-~~~-~l~~L~~l~l~L~l~~n~~~-g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~ 216 (258)
.+|++|++++...- ...| .++ -+|+|+. |.+.+-.+. ..+-.-..++++|..||+|+.+++. ..
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~s----L~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n--------l~ 189 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRS----LVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN--------LS 189 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccce----EEecCceecchhHHHHhhccCccceeecCCCCccC--------cH
Confidence 56777777775433 2223 344 3677887 666554442 2233345677888888888888764 26
Q ss_pred hhcCCCCCccccccccc---cccchhhcCCCCCCeEeccCCcC
Q 039201 217 LLRNCSKLKTLQYNQLT---GTIPDTTGELRNLQAPDLSENNL 256 (258)
Q Consensus 217 ~l~~l~~L~~L~~N~l~---g~ip~~l~~l~~L~~L~Ls~N~l 256 (258)
.++++++|+.|+...+. ...-..+.+|++|++||+|..+.
T Consensus 190 GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 190 GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred HHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence 67777777777332222 12223567889999999987654
No 62
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.37 E-value=0.001 Score=33.72 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=15.8
Q ss_pred CCCEEEccCCCCcCCCCcccCC
Q 039201 95 FVRVIVLANNSYYGEIPNEVGC 116 (258)
Q Consensus 95 ~L~~L~Ls~n~l~g~~p~~l~~ 116 (258)
+|++||+++|+++ .+|+.+++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4778888888887 77776654
No 63
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=0.0035 Score=53.46 Aligned_cols=172 Identities=15% Similarity=0.178 Sum_probs=106.1
Q ss_pred ccccceeeC-CCCCcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcC-CCCcccCCCCCCcEEc-CCC-------
Q 039201 58 CQWTGVTCS-HRHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYG-EIPNEVGCLSRLETLI-GGY------- 127 (258)
Q Consensus 58 c~w~gv~c~-~~~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g-~~p~~l~~l~~L~~L~-~~n------- 127 (258)
-.|+-|.|- ..-|+++.|+++.|.+...|...-..+.+|++|-|.+..+.= .....+..++.++.|. +.|
T Consensus 84 SdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~ 163 (418)
T KOG2982|consen 84 SDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNL 163 (418)
T ss_pred ccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhcc
Confidence 357666664 345699999999999876554433567789999988876642 2334445666666664 333
Q ss_pred ---ccCCCCCcc--c-----------------CCCCCCCEEEccccccccccc--cccCCCCcceecceeecCCCccccc
Q 039201 128 ---RLGGKIPES--L-----------------GQLGSINYLILAENNFSGTLR--SIFNISSLEFQSSETEKSKNRFTGK 183 (258)
Q Consensus 128 ---~l~g~ip~~--~-----------------~~l~~L~~L~L~~n~l~g~~p--~~~~l~~L~~l~l~L~l~~n~~~g~ 183 (258)
.....-|+- + .-++++..+.+..|.+...-. ....++.+.. |+|+.|++..-
T Consensus 164 Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~----LnL~~~~idsw 239 (418)
T KOG2982|consen 164 DDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC----LNLGANNIDSW 239 (418)
T ss_pred ccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh----hhhcccccccH
Confidence 222211110 0 124566666666665543222 3344556666 88888887532
Q ss_pred c-CccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccccccccc
Q 039201 184 L-GIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTLQYNQLT 233 (258)
Q Consensus 184 i-p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L~~N~l~ 233 (258)
- -..+..+++|..|.+++|.+...+...-...-.++.+++++.|.+-+++
T Consensus 240 asvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGskIs 290 (418)
T KOG2982|consen 240 ASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGSKIS 290 (418)
T ss_pred HHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCcccc
Confidence 1 2347889999999999999887655443344567888888887433443
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.09 E-value=0.00046 Score=58.11 Aligned_cols=84 Identities=20% Similarity=0.130 Sum_probs=55.7
Q ss_pred CCCCCCCEEEccccccccccccccCCCCcceecceeecCCCccccc-cCccccCCCCCCeEecCCCcCCccCCCCchhhh
Q 039201 138 GQLGSINYLILAENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGK-LGIDFNSLINLARLNLGQKNLGIGTTSDLDFIT 216 (258)
Q Consensus 138 ~~l~~L~~L~L~~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~-ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~ 216 (258)
.+|+.|++|.|+-|+++ .+..+..+++|++ ++|..|.+... --..+.++++|+.|.|..|.-.|..+.++.. .
T Consensus 38 ~kMp~lEVLsLSvNkIs-sL~pl~rCtrLkE----lYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~-~ 111 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKIS-SLAPLQRCTRLKE----LYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRR-K 111 (388)
T ss_pred HhcccceeEEeeccccc-cchhHHHHHHHHH----HHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHH-H
Confidence 46788888888888887 3334556778888 77888876521 1134567788888888888887776655432 3
Q ss_pred hhcCCCCCccc
Q 039201 217 LLRNCSKLKTL 227 (258)
Q Consensus 217 ~l~~l~~L~~L 227 (258)
.+.-+++|+.|
T Consensus 112 VLR~LPnLkKL 122 (388)
T KOG2123|consen 112 VLRVLPNLKKL 122 (388)
T ss_pred HHHHcccchhc
Confidence 44555555555
No 65
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.07 E-value=0.0027 Score=32.12 Aligned_cols=15 Identities=33% Similarity=0.678 Sum_probs=8.4
Q ss_pred CCEEEccccccccccc
Q 039201 143 INYLILAENNFSGTLR 158 (258)
Q Consensus 143 L~~L~L~~n~l~g~~p 158 (258)
|++|++++|+++ .+|
T Consensus 2 L~~Ldls~n~l~-~ip 16 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIP 16 (22)
T ss_dssp ESEEEETSSEES-EEG
T ss_pred ccEEECCCCcCE-eCC
Confidence 555555555555 455
No 66
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.0005 Score=58.44 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCC-CCcC-CCCcccCCCCCCcEEc
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANN-SYYG-EIPNEVGCLSRLETLI 124 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n-~l~g-~~p~~l~~l~~L~~L~ 124 (258)
++..|.+.++.+...+-..+++-..|+.|+++.+ +|+. ...--+.+++.|+.|+
T Consensus 211 kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 211 KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 3444555555555555555666666666666653 2321 0111234555666655
No 67
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.42 E-value=0.00085 Score=55.18 Aligned_cols=86 Identities=16% Similarity=0.047 Sum_probs=70.3
Q ss_pred CCCcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEcCCCccCCCCCcccCCCCCCCEEE
Q 039201 68 RHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLIGGYRLGGKIPESLGQLGSINYLI 147 (258)
Q Consensus 68 ~~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~~~n~l~g~ip~~~~~l~~L~~L~ 147 (258)
.+.+++.||++.|++. .+...+..++.+..||++.|.+. -+|..++....++.++++++-....|.+.+..+.+++++
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence 3458999999998875 34455677888889999999886 688888888888888877666668999999999999999
Q ss_pred cccccccc
Q 039201 148 LAENNFSG 155 (258)
Q Consensus 148 L~~n~l~g 155 (258)
+-.|.|.-
T Consensus 118 ~k~~~~~~ 125 (326)
T KOG0473|consen 118 QKKTEFFR 125 (326)
T ss_pred hccCcchH
Confidence 99988763
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.93 E-value=0.31 Score=35.88 Aligned_cols=32 Identities=13% Similarity=0.159 Sum_probs=11.8
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccC
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLAN 103 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~ 103 (258)
+++.+.+.. .+...-...+...+.|+.+.+.+
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESS
T ss_pred CCCEEEECC-CeeEeChhhcccccccccccccc
Confidence 455555542 33322223455555555555554
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.90 E-value=0.0076 Score=51.00 Aligned_cols=64 Identities=20% Similarity=0.186 Sum_probs=30.5
Q ss_pred CCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc--cccCCCCcceecceeecCCCccccccC
Q 039201 116 CLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR--SIFNISSLEFQSSETEKSKNRFTGKLG 185 (258)
Q Consensus 116 ~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p--~~~~l~~L~~l~l~L~l~~n~~~g~ip 185 (258)
+++.|+.|. +-|.++.- ..+..|++|+.|+|..|.+...-. -+.++++|+. |-|..|.-.|.-+
T Consensus 39 kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~----LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT----LWLDENPCCGEAG 105 (388)
T ss_pred hcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh----HhhccCCcccccc
Confidence 455555555 44444321 224455555555555555542111 3445555555 4455555554444
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.77 E-value=0.36 Score=35.51 Aligned_cols=102 Identities=18% Similarity=0.180 Sum_probs=40.1
Q ss_pred cCCCCCCCCEEEccCCCCcCCCC-cccCCCCCCcEEcCCCccCCCCCcccCCCCCCCEEEccccccccccc--cccCCCC
Q 039201 89 FVGNPSFVRVIVLANNSYYGEIP-NEVGCLSRLETLIGGYRLGGKIPESLGQLGSINYLILAENNFSGTLR--SIFNISS 165 (258)
Q Consensus 89 ~~~~l~~L~~L~Ls~n~l~g~~p-~~l~~l~~L~~L~~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p--~~~~l~~ 165 (258)
.+...++|+.+.+.. .+. .++ ..+.++++|+.+...+.+...-...+.++++++.+.+.. .+. .++ .+...++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNNLTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESSTTSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-Cee-EeChhhcccccccccccccccccccceeeeecccccccccccc-ccc-cccccccccccc
Confidence 455666777777764 343 233 345556666666633333321123355565666666654 222 233 4445666
Q ss_pred cceecceeecCCCccccccCccccCCCCCCeEecC
Q 039201 166 LEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLG 200 (258)
Q Consensus 166 L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls 200 (258)
|+. +++..+ +...-...+.+. +|+.+.+.
T Consensus 83 l~~----i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 83 LKN----IDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp ECE----EEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred ccc----cccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 666 555443 321122233443 55555554
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.52 E-value=0.047 Score=25.66 Aligned_cols=14 Identities=29% Similarity=0.342 Sum_probs=8.6
Q ss_pred CCCCEEEccCCCCc
Q 039201 94 SFVRVIVLANNSYY 107 (258)
Q Consensus 94 ~~L~~L~Ls~n~l~ 107 (258)
++|++|++++|+++
T Consensus 1 ~~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT 14 (17)
T ss_dssp TT-SEEEETSS--S
T ss_pred CccCEEECCCCCCC
Confidence 46788888888876
No 72
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.67 E-value=0.011 Score=48.84 Aligned_cols=78 Identities=15% Similarity=0.071 Sum_probs=37.9
Q ss_pred cCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhh
Q 039201 137 LGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFI 215 (258)
Q Consensus 137 ~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~ 215 (258)
+....+-+.||++.|++- .+- .+..++.+.. ++++.|++. .+|..++....+..+++..|..+. .|
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~r----l~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~-------~p 104 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVR----LDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ-------QP 104 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHH----HhccHhhHh-hChhhHHHHHHHHHHHhhccchhh-------CC
Confidence 444555555566555543 122 3333444444 555555544 445555555555555555555443 34
Q ss_pred hhhcCCCCCccc
Q 039201 216 TLLRNCSKLKTL 227 (258)
Q Consensus 216 ~~l~~l~~L~~L 227 (258)
.+.+..++++++
T Consensus 105 ~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 105 KSQKKEPHPKKN 116 (326)
T ss_pred ccccccCCcchh
Confidence 444444444443
No 73
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.08 E-value=0.29 Score=25.43 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=15.9
Q ss_pred CCCCCEEEccCCCCcCCCCcc
Q 039201 93 PSFVRVIVLANNSYYGEIPNE 113 (258)
Q Consensus 93 l~~L~~L~Ls~n~l~g~~p~~ 113 (258)
+++|++|+|++|++. .+|+.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 468899999999987 66654
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.08 E-value=0.29 Score=25.43 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=15.9
Q ss_pred CCCCCEEEccCCCCcCCCCcc
Q 039201 93 PSFVRVIVLANNSYYGEIPNE 113 (258)
Q Consensus 93 l~~L~~L~Ls~n~l~g~~p~~ 113 (258)
+++|++|+|++|++. .+|+.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 468899999999987 66654
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.62 E-value=0.23 Score=25.30 Aligned_cols=15 Identities=40% Similarity=0.523 Sum_probs=10.4
Q ss_pred CCCCCeEeccCCcCC
Q 039201 243 LRNLQAPDLSENNLN 257 (258)
Q Consensus 243 l~~L~~L~Ls~N~l~ 257 (258)
+++|+.|+|++|+++
T Consensus 1 ~~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 1 NPNLETLDLSNNQIT 15 (24)
T ss_dssp -TT-SEEE-TSSBEH
T ss_pred CCCCCEEEccCCcCC
Confidence 368999999999875
No 76
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=82.07 E-value=1.2 Score=23.38 Aligned_cols=15 Identities=47% Similarity=0.707 Sum_probs=12.7
Q ss_pred CCCCCeEeccCCcCC
Q 039201 243 LRNLQAPDLSENNLN 257 (258)
Q Consensus 243 l~~L~~L~Ls~N~l~ 257 (258)
+.+|+.|+++.|+++
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 468999999999875
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=80.32 E-value=0.011 Score=54.52 Aligned_cols=180 Identities=22% Similarity=0.198 Sum_probs=98.3
Q ss_pred EEEEEcCCCCCcccCC----ccCCCCCCCCEEEccCCCCcCCCCcc----cCCC-CCCcEEc-CCCccC----CCCCccc
Q 039201 72 VTKLDLRSKSIGGFLS----PFVGNPSFVRVIVLANNSYYGEIPNE----VGCL-SRLETLI-GGYRLG----GKIPESL 137 (258)
Q Consensus 72 v~~l~l~~~~l~g~lp----~~~~~l~~L~~L~Ls~n~l~g~~p~~----l~~l-~~L~~L~-~~n~l~----g~ip~~~ 137 (258)
+..+.|.+|.+...-. ..+.....|+.|++++|.+.+.--.. +... ..+++|+ ..+.++ +.+.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 5667777887754322 35677888888999998886421111 1111 3344454 333333 2344556
Q ss_pred CCCCCCCEEEccccccc--cc--cc-ccc----CCCCcceecceeecCCCccccc----cCccccCCCC-CCeEecCCCc
Q 039201 138 GQLGSINYLILAENNFS--GT--LR-SIF----NISSLEFQSSETEKSKNRFTGK----LGIDFNSLIN-LARLNLGQKN 203 (258)
Q Consensus 138 ~~l~~L~~L~L~~n~l~--g~--~p-~~~----~l~~L~~l~l~L~l~~n~~~g~----ip~~~~~l~~-L~~L~ls~N~ 203 (258)
.....++.++++.|.+. |. ++ .+. ...++++ +.++++.++.. +-..+...+. +..+++..|.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~----L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~ 244 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLET----LKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK 244 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHH----HhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC
Confidence 66777888888888773 22 12 233 3566777 66666665411 1112333444 5557777777
Q ss_pred CCccCCCCchhhhhhcCC-CCCccc--cccccccc----cchhhcCCCCCCeEeccCCcCC
Q 039201 204 LGIGTTSDLDFITLLRNC-SKLKTL--QYNQLTGT----IPDTTGELRNLQAPDLSENNLN 257 (258)
Q Consensus 204 l~g~~p~~~~~~~~l~~l-~~L~~L--~~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~ 257 (258)
+.+..- -...+.+..+ ..++.+ +.|.++.. +...+..++.++.+.++.|.+.
T Consensus 245 l~d~g~--~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 245 LGDVGV--EKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred cchHHH--HHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 654310 0022333333 333333 66776643 3444556667778888777764
No 78
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=79.59 E-value=1.6 Score=23.24 Aligned_cols=14 Identities=43% Similarity=0.572 Sum_probs=12.2
Q ss_pred CCCCeEeccCCcCC
Q 039201 244 RNLQAPDLSENNLN 257 (258)
Q Consensus 244 ~~L~~L~Ls~N~l~ 257 (258)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 57999999999885
No 79
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=75.89 E-value=0.032 Score=51.41 Aligned_cols=157 Identities=22% Similarity=0.270 Sum_probs=83.8
Q ss_pred cEEEEEcCCCCCccc----CCccCCCC-CCCCEEEccCCCCcCC----CCcccCCCCCCcEEc-CCCccC--C--CCCcc
Q 039201 71 RVTKLDLRSKSIGGF----LSPFVGNP-SFVRVIVLANNSYYGE----IPNEVGCLSRLETLI-GGYRLG--G--KIPES 136 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~----lp~~~~~l-~~L~~L~Ls~n~l~g~----~p~~l~~l~~L~~L~-~~n~l~--g--~ip~~ 136 (258)
++..+++++|++.+. +-+.+... ..+++|++..+.+++. +...+.....++.++ ..|.+. | .++..
T Consensus 116 ~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~ 195 (478)
T KOG4308|consen 116 TLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQA 195 (478)
T ss_pred cHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhh
Confidence 567788888777632 11223333 4566677766666542 334444455555555 333331 1 11222
Q ss_pred c----CCCCCCCEEEccccccccc----cc-cccCCCC-cceecceeecCCCccccc----cCccccCC-CCCCeEecCC
Q 039201 137 L----GQLGSINYLILAENNFSGT----LR-SIFNISS-LEFQSSETEKSKNRFTGK----LGIDFNSL-INLARLNLGQ 201 (258)
Q Consensus 137 ~----~~l~~L~~L~L~~n~l~g~----~p-~~~~l~~-L~~l~l~L~l~~n~~~g~----ip~~~~~l-~~L~~L~ls~ 201 (258)
+ ....++++|.++++.++.. +. .+...++ ++. +++..|++... +.+.+..+ ..+++++++.
T Consensus 196 l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~e----l~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~ 271 (478)
T KOG4308|consen 196 LESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRE----LDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSR 271 (478)
T ss_pred hhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHH----HHHHhcCcchHHHHHHHHHhcccchhhhhhhhhc
Confidence 2 3466788888888776621 11 2334444 555 77777776533 23334455 5677888888
Q ss_pred CcCCccCCCCchhhhhhcCCCCCccc--cccccc
Q 039201 202 KNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLT 233 (258)
Q Consensus 202 N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~ 233 (258)
|.++..-... ....+..+.+++.+ +.|.+.
T Consensus 272 nsi~~~~~~~--L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 272 NSITEKGVRD--LAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred CCccccchHH--HHHHHhhhHHHHHhhcccCccc
Confidence 8876542211 33445555555555 555554
No 80
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=71.46 E-value=3 Score=21.93 Aligned_cols=18 Identities=17% Similarity=0.392 Sum_probs=13.6
Q ss_pred CCCCEEEccCCCCcCCCCc
Q 039201 94 SFVRVIVLANNSYYGEIPN 112 (258)
Q Consensus 94 ~~L~~L~Ls~n~l~g~~p~ 112 (258)
.+|++|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 36788888888887 5665
No 81
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=53.75 E-value=6.1 Score=35.81 Aligned_cols=13 Identities=31% Similarity=0.268 Sum_probs=7.2
Q ss_pred CCCCCCeEeccCC
Q 039201 242 ELRNLQAPDLSEN 254 (258)
Q Consensus 242 ~l~~L~~L~Ls~N 254 (258)
.+++|+.|+++.+
T Consensus 293 ~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 293 RCPSLRELDLSGC 305 (482)
T ss_pred hcCcccEEeeecC
Confidence 3455666666544
No 82
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=48.57 E-value=2.4 Score=38.53 Aligned_cols=14 Identities=7% Similarity=-0.083 Sum_probs=7.1
Q ss_pred CCCCCCCCEEEccC
Q 039201 90 VGNPSFVRVIVLAN 103 (258)
Q Consensus 90 ~~~l~~L~~L~Ls~ 103 (258)
....+.|+.|++++
T Consensus 210 ~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 210 ALKCPNLEELDLSG 223 (482)
T ss_pred HhhCchhheecccC
Confidence 34445555555554
No 83
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=41.68 E-value=9.9 Score=34.41 Aligned_cols=13 Identities=31% Similarity=0.250 Sum_probs=5.9
Q ss_pred CCCCCeEecCCCc
Q 039201 191 LINLARLNLGQKN 203 (258)
Q Consensus 191 l~~L~~L~ls~N~ 203 (258)
+..|+.+.+++..
T Consensus 400 ~~~l~~lEL~n~p 412 (483)
T KOG4341|consen 400 LEGLEVLELDNCP 412 (483)
T ss_pred ccccceeeecCCC
Confidence 3344444444444
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.00 E-value=4.7 Score=32.79 Aligned_cols=34 Identities=18% Similarity=0.114 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCC
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANN 104 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n 104 (258)
.|+.+|-++..+.++=-+.+.+++.++.|.+.++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 5788888877776544455666666666666654
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=37.95 E-value=17 Score=34.05 Aligned_cols=92 Identities=17% Similarity=0.140 Sum_probs=51.7
Q ss_pred CCCCCCCEEEcccccccccc--ccc-cCCCCcceecceeecCCCccccccCccccCC--CCCCeEecCCCcCCccCCCCc
Q 039201 138 GQLGSINYLILAENNFSGTL--RSI-FNISSLEFQSSETEKSKNRFTGKLGIDFNSL--INLARLNLGQKNLGIGTTSDL 212 (258)
Q Consensus 138 ~~l~~L~~L~L~~n~l~g~~--p~~-~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l--~~L~~L~ls~N~l~g~~p~~~ 212 (258)
.+.+.+..++|++|++...- .++ ...++|.. |+|++|...-.--.++.++ ..|++|.+.+|.+....-..-
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~----L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s 290 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKT----LDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRS 290 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhhe----eecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhH
Confidence 35677888889999887321 122 24578888 8888883211111223333 357888889998876532111
Q ss_pred hhhh-hhcCCCCCccccccccc
Q 039201 213 DFIT-LLRNCSKLKTLQYNQLT 233 (258)
Q Consensus 213 ~~~~-~l~~l~~L~~L~~N~l~ 233 (258)
+... .-..+++|..|++..+.
T Consensus 291 ~yv~~i~~~FPKL~~LDG~ev~ 312 (585)
T KOG3763|consen 291 EYVSAIRELFPKLLRLDGVEVQ 312 (585)
T ss_pred HHHHHHHHhcchheeecCcccC
Confidence 1111 12245666666665554
No 86
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=33.39 E-value=31 Score=17.52 Aligned_cols=13 Identities=38% Similarity=0.345 Sum_probs=10.5
Q ss_pred CCCCCeEeccCCc
Q 039201 243 LRNLQAPDLSENN 255 (258)
Q Consensus 243 l~~L~~L~Ls~N~ 255 (258)
+++|+.|+|+++.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3689999998874
No 87
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=27.45 E-value=64 Score=22.08 Aligned_cols=17 Identities=12% Similarity=0.122 Sum_probs=12.1
Q ss_pred CchhhHHHHHHHHHHHH
Q 039201 1 MINSISFSSVATLVWCF 17 (258)
Q Consensus 1 m~~~~~~~~~~~~~~~~ 17 (258)
|++.++++.++++.+++
T Consensus 1 MaRRlwiLslLAVtLtV 17 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTV 17 (100)
T ss_pred CchhhHHHHHHHHHHHH
Confidence 88888887776665543
No 88
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=26.59 E-value=95 Score=19.82 Aligned_cols=10 Identities=10% Similarity=0.225 Sum_probs=5.9
Q ss_pred CchhhHHHHH
Q 039201 1 MINSISFSSV 10 (258)
Q Consensus 1 m~~~~~~~~~ 10 (258)
||++++.+.+
T Consensus 1 MA~Kl~vial 10 (65)
T PF10731_consen 1 MASKLIVIAL 10 (65)
T ss_pred CcchhhHHHH
Confidence 7777664433
No 89
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=22.95 E-value=1.8e+02 Score=17.69 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=12.7
Q ss_pred ccCCCChHHHHHHHHHhC
Q 039201 24 TRTHSNKTDHLLAIKSQL 41 (258)
Q Consensus 24 ~~~~~~~~~aL~~~~~~~ 41 (258)
..+...++|||++.++.+
T Consensus 26 crafrqdrdallear~kl 43 (54)
T PF13260_consen 26 CRAFRQDRDALLEARNKL 43 (54)
T ss_pred HHHHhhhHHHHHHHHHHH
Confidence 344456778999988766
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.03 E-value=61 Score=36.52 Aligned_cols=30 Identities=27% Similarity=0.314 Sum_probs=22.2
Q ss_pred Eccccccccccc--cccCCCCcceecceeecCCCccc
Q 039201 147 ILAENNFSGTLR--SIFNISSLEFQSSETEKSKNRFT 181 (258)
Q Consensus 147 ~L~~n~l~g~~p--~~~~l~~L~~l~l~L~l~~n~~~ 181 (258)
||++|+|+ .+| .|..+++|++ |+|++|.+.
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~----LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSE----IDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceE----EEeeCCccc
Confidence 57788887 555 6667888888 888888764
Done!