Query 039201
Match_columns 258
No_of_seqs 288 out of 2393
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 12:05:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039201.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039201hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 9.8E-38 3.4E-42 269.7 16.3 218 28-257 3-234 (313)
2 3rgz_A Protein brassinosteroid 100.0 2.1E-34 7.2E-39 276.2 14.8 212 30-257 13-260 (768)
3 4eco_A Uncharacterized protein 100.0 1.7E-34 5.8E-39 271.6 10.5 212 31-256 32-365 (636)
4 4fcg_A Uncharacterized protein 100.0 9E-33 3.1E-37 240.2 11.0 222 28-258 26-291 (328)
5 4ecn_A Leucine-rich repeat pro 100.0 1.3E-32 4.5E-37 265.5 10.9 207 31-256 271-607 (876)
6 3rgz_A Protein brassinosteroid 100.0 2.1E-28 7.2E-33 234.6 14.6 178 71-258 467-718 (768)
7 1ogq_A PGIP-2, polygalacturona 99.9 7.9E-28 2.7E-32 207.6 10.4 184 70-258 76-282 (313)
8 2o6q_A Variable lymphocyte rec 99.9 3E-25 1E-29 187.3 18.8 177 71-257 38-218 (270)
9 4fcg_A Uncharacterized protein 99.9 3E-26 1E-30 199.1 12.5 174 71-257 105-314 (328)
10 3m19_A Variable lymphocyte rec 99.9 1.9E-25 6.6E-30 186.6 16.7 187 56-258 3-193 (251)
11 1ozn_A Reticulon 4 receptor; N 99.9 2.9E-24 1E-28 182.4 17.7 176 71-256 33-213 (285)
12 3v47_A TOLL-like receptor 5B a 99.9 1.8E-24 6E-29 194.9 16.9 151 56-210 6-172 (455)
13 2z66_A Variable lymphocyte rec 99.9 3.5E-24 1.2E-28 183.6 15.0 198 56-257 5-261 (306)
14 1ozn_A Reticulon 4 receptor; N 99.9 9.1E-24 3.1E-28 179.3 16.5 178 70-257 56-238 (285)
15 3zyi_A Leucine-rich repeat-con 99.9 1.3E-23 4.5E-28 189.7 18.4 190 60-257 56-279 (452)
16 2z62_A TOLL-like receptor 4, v 99.9 3E-23 1E-27 175.3 16.7 184 71-258 29-238 (276)
17 1xku_A Decorin; proteoglycan, 99.9 4.4E-23 1.5E-27 178.6 18.1 195 56-258 29-277 (330)
18 2o6s_A Variable lymphocyte rec 99.9 2.9E-23 9.8E-28 168.4 15.3 173 56-245 5-190 (208)
19 2ft3_A Biglycan; proteoglycan, 99.9 4.4E-23 1.5E-27 178.9 17.1 194 56-258 31-278 (332)
20 3zyj_A Leucine-rich repeat-con 99.9 5.1E-23 1.8E-27 185.2 17.6 190 60-257 45-268 (440)
21 4eco_A Uncharacterized protein 99.9 1.1E-24 3.6E-29 204.9 6.8 161 82-256 195-389 (636)
22 2z81_A CD282 antigen, TOLL-lik 99.9 6.4E-24 2.2E-28 195.5 10.9 190 57-258 3-210 (549)
23 3rfs_A Internalin B, repeat mo 99.9 1.2E-22 4.1E-27 171.6 17.2 174 71-258 42-219 (272)
24 2z66_A Variable lymphocyte rec 99.9 3.4E-23 1.2E-27 177.4 13.4 156 71-236 102-264 (306)
25 3oja_B Anopheles plasmodium-re 99.9 1.3E-22 4.3E-27 189.4 17.9 180 71-257 76-291 (597)
26 2z80_A TOLL-like receptor 2, v 99.9 1.2E-23 4E-28 184.0 9.7 196 51-258 23-236 (353)
27 1wwl_A Monocyte differentiatio 99.9 9.2E-24 3.1E-28 181.9 8.6 179 71-258 96-310 (312)
28 2id5_A Lingo-1, leucine rich r 99.9 2.5E-22 8.6E-27 182.1 16.5 187 59-255 12-211 (477)
29 3v47_A TOLL-like receptor 5B a 99.9 2E-22 6.8E-27 181.4 15.2 115 134-258 292-409 (455)
30 2xwt_C Thyrotropin receptor; s 99.9 1.7E-22 5.6E-27 167.4 13.0 177 70-258 31-219 (239)
31 1p9a_G Platelet glycoprotein I 99.9 4.9E-22 1.7E-26 169.6 16.0 174 70-257 31-208 (290)
32 3o6n_A APL1; leucine-rich repe 99.9 1.1E-21 3.6E-26 173.7 18.1 106 71-181 70-178 (390)
33 3vq2_A TLR4, TOLL-like recepto 99.9 1.5E-22 5.1E-27 188.6 13.1 177 70-257 32-217 (606)
34 4ecn_A Leucine-rich repeat pro 99.9 2.3E-23 7.9E-28 201.2 7.1 158 86-257 440-632 (876)
35 3j0a_A TOLL-like receptor 5; m 99.9 2.8E-22 9.7E-27 193.9 14.0 189 58-258 14-218 (844)
36 3vq2_A TLR4, TOLL-like recepto 99.9 4.2E-22 1.4E-26 185.5 14.3 174 72-257 378-558 (606)
37 3zyi_A Leucine-rich repeat-con 99.9 8.3E-22 2.8E-26 177.9 15.6 177 70-257 99-303 (452)
38 2o6q_A Variable lymphocyte rec 99.9 2.5E-21 8.6E-26 163.2 17.5 190 55-258 2-195 (270)
39 3rfs_A Internalin B, repeat mo 99.9 3.9E-22 1.3E-26 168.5 12.3 152 70-233 63-218 (272)
40 3m19_A Variable lymphocyte rec 99.9 1.2E-21 4.1E-26 163.5 15.1 167 59-235 15-194 (251)
41 3t6q_A CD180 antigen; protein- 99.9 6.2E-22 2.1E-26 184.4 14.4 176 71-257 377-560 (606)
42 3zyj_A Leucine-rich repeat-con 99.9 1.1E-21 3.8E-26 176.5 15.4 176 71-257 89-292 (440)
43 3oja_B Anopheles plasmodium-re 99.9 1.1E-21 3.8E-26 183.0 15.5 176 70-257 99-337 (597)
44 4glp_A Monocyte differentiatio 99.9 2.9E-22 9.9E-27 172.3 10.2 173 71-257 92-285 (310)
45 2z7x_B TOLL-like receptor 1, v 99.9 5.7E-22 1.9E-26 181.6 12.5 154 91-258 321-482 (520)
46 3t6q_A CD180 antigen; protein- 99.9 2E-21 6.7E-26 181.0 16.0 181 70-257 325-513 (606)
47 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.1E-21 3.7E-26 181.6 14.0 154 91-258 350-511 (562)
48 3o6n_A APL1; leucine-rich repe 99.9 2.9E-21 1E-25 170.9 15.5 175 70-257 93-331 (390)
49 2z7x_B TOLL-like receptor 1, v 99.9 6.5E-22 2.2E-26 181.2 11.6 82 70-154 45-128 (520)
50 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.6E-21 5.4E-26 180.6 13.7 95 71-168 53-150 (562)
51 1wwl_A Monocyte differentiatio 99.9 8.8E-23 3E-27 175.7 4.9 177 72-257 65-266 (312)
52 3oja_A Leucine-rich immune mol 99.9 9E-22 3.1E-26 179.6 11.3 180 71-257 35-250 (487)
53 2z80_A TOLL-like receptor 2, v 99.9 1.2E-21 4E-26 171.3 11.1 182 70-258 76-315 (353)
54 2z63_A TOLL-like receptor 4, v 99.9 1.4E-21 4.7E-26 180.5 11.9 178 70-258 347-532 (570)
55 3e6j_A Variable lymphocyte rec 99.9 8.3E-21 2.8E-25 156.5 15.1 155 48-207 9-174 (229)
56 1p9a_G Platelet glycoprotein I 99.9 7E-21 2.4E-25 162.5 15.0 171 71-257 11-185 (290)
57 1ziw_A TOLL-like receptor 3; i 99.9 2.5E-21 8.6E-26 182.7 13.3 171 70-250 25-201 (680)
58 2id5_A Lingo-1, leucine rich r 99.9 4.1E-21 1.4E-25 174.2 14.0 183 70-257 56-261 (477)
59 3cvr_A Invasion plasmid antige 99.9 2.4E-21 8.2E-26 179.5 11.8 183 49-258 34-244 (571)
60 3o53_A Protein LRIM1, AGAP0063 99.8 4.1E-21 1.4E-25 165.6 9.7 170 71-257 59-250 (317)
61 4g8a_A TOLL-like receptor 4; l 99.8 1.3E-20 4.5E-25 175.4 13.0 175 71-256 53-236 (635)
62 1ziw_A TOLL-like receptor 3; i 99.8 4.3E-20 1.5E-24 174.3 16.3 178 71-258 382-598 (680)
63 3j0a_A TOLL-like receptor 5; m 99.8 3E-20 1E-24 179.8 14.8 98 71-168 49-152 (844)
64 2z81_A CD282 antigen, TOLL-lik 99.8 2E-20 7E-25 172.1 12.4 178 64-257 3-185 (549)
65 2z62_A TOLL-like receptor 4, v 99.8 6.9E-20 2.4E-24 154.6 14.3 169 77-257 14-190 (276)
66 2z63_A TOLL-like receptor 4, v 99.8 3E-20 1E-24 171.5 13.0 175 70-255 28-211 (570)
67 4glp_A Monocyte differentiatio 99.8 4.9E-21 1.7E-25 164.6 7.1 174 70-258 117-308 (310)
68 2o6s_A Variable lymphocyte rec 99.8 6.8E-20 2.3E-24 148.4 13.1 166 73-258 10-179 (208)
69 1h6u_A Internalin H; cell adhe 99.8 8.8E-20 3E-24 156.8 14.3 166 70-258 63-231 (308)
70 1h6t_A Internalin B; cell adhe 99.8 9.3E-20 3.2E-24 155.5 14.0 164 71-257 47-213 (291)
71 1h6u_A Internalin H; cell adhe 99.8 1.6E-19 5.6E-24 155.1 15.6 165 71-258 42-209 (308)
72 4g8a_A TOLL-like receptor 4; l 99.8 5E-20 1.7E-24 171.5 13.0 170 76-257 37-214 (635)
73 2v70_A SLIT-2, SLIT homolog 2 99.8 1.4E-19 4.6E-24 148.4 13.5 151 74-237 15-170 (220)
74 2v9t_B SLIT homolog 2 protein 99.8 2.1E-19 7.1E-24 147.2 13.6 148 56-207 9-167 (220)
75 4ezg_A Putative uncharacterize 99.8 1.3E-19 4.5E-24 145.8 11.9 150 91-258 41-195 (197)
76 2v70_A SLIT-2, SLIT homolog 2 99.8 1.9E-19 6.4E-24 147.5 12.9 149 56-208 9-169 (220)
77 2ft3_A Biglycan; proteoglycan, 99.8 3.3E-19 1.1E-23 154.4 14.9 105 141-256 193-306 (332)
78 3e6j_A Variable lymphocyte rec 99.8 5.5E-19 1.9E-23 145.6 15.4 159 60-237 14-176 (229)
79 1xku_A Decorin; proteoglycan, 99.8 4.6E-19 1.6E-23 153.3 15.5 172 71-256 122-305 (330)
80 2xot_A Amphoterin-induced prot 99.8 1.8E-19 6E-24 158.2 12.8 170 74-257 22-202 (361)
81 2v9t_B SLIT homolog 2 protein 99.8 5.4E-19 1.9E-23 144.8 14.2 149 73-234 14-166 (220)
82 4b8c_D Glucose-repressible alc 99.8 2.6E-20 8.8E-25 177.5 6.6 195 30-240 133-361 (727)
83 1o6v_A Internalin A; bacterial 99.8 5.4E-19 1.8E-23 160.0 14.6 165 71-258 222-389 (466)
84 3bz5_A Internalin-J, INLJ; leu 99.8 1.2E-18 4.2E-23 157.6 16.7 162 71-258 65-247 (457)
85 2xwt_C Thyrotropin receptor; s 99.8 2.7E-19 9.2E-24 148.0 10.8 170 70-255 55-237 (239)
86 4fmz_A Internalin; leucine ric 99.8 7.9E-19 2.7E-23 152.6 14.0 166 71-257 178-346 (347)
87 2ast_B S-phase kinase-associat 99.8 2.6E-20 8.9E-25 161.2 4.2 175 71-255 71-258 (336)
88 3bz5_A Internalin-J, INLJ; leu 99.8 2E-18 6.8E-23 156.2 16.3 166 71-258 43-226 (457)
89 4ay9_X Follicle-stimulating ho 99.8 4.9E-19 1.7E-23 154.7 11.8 189 57-257 8-215 (350)
90 1m9s_A Internalin B; cell inva 99.8 9.3E-19 3.2E-23 163.4 13.5 165 71-258 44-211 (605)
91 4fmz_A Internalin; leucine ric 99.8 2.4E-18 8.4E-23 149.5 14.6 150 90-258 173-325 (347)
92 4ezg_A Putative uncharacterize 99.8 1.1E-18 3.9E-23 140.2 11.5 147 71-234 45-195 (197)
93 1o6v_A Internalin A; bacterial 99.8 2.9E-18 9.8E-23 155.2 15.4 165 71-258 200-367 (466)
94 2ast_B S-phase kinase-associat 99.8 2E-20 6.8E-25 161.9 0.5 209 30-257 13-236 (336)
95 3o53_A Protein LRIM1, AGAP0063 99.8 5E-20 1.7E-24 158.8 2.5 167 71-253 100-271 (317)
96 1w8a_A SLIT protein; signaling 99.8 2.6E-18 8.8E-23 137.7 12.4 130 73-209 11-143 (192)
97 3oja_A Leucine-rich immune mol 99.8 6.3E-19 2.1E-23 160.7 9.7 162 89-257 29-227 (487)
98 1jl5_A Outer protein YOPM; leu 99.8 1E-19 3.5E-24 164.5 4.4 165 71-258 12-209 (454)
99 2ca6_A RAN GTPase-activating p 99.8 2.4E-20 8.1E-25 164.9 0.1 183 70-258 94-317 (386)
100 1xeu_A Internalin C; cellular 99.8 4.2E-19 1.4E-23 149.3 7.7 141 71-233 42-185 (263)
101 2ca6_A RAN GTPase-activating p 99.8 5.1E-20 1.8E-24 162.7 1.9 181 71-257 61-287 (386)
102 2xot_A Amphoterin-induced prot 99.8 4.7E-18 1.6E-22 149.1 12.9 167 56-233 16-202 (361)
103 1jl5_A Outer protein YOPM; leu 99.7 1.8E-17 6.2E-22 149.8 15.2 116 71-206 92-209 (454)
104 1h6t_A Internalin B; cell adhe 99.7 2.7E-17 9.2E-22 140.2 13.3 162 74-258 28-192 (291)
105 1w8a_A SLIT protein; signaling 99.7 3.5E-17 1.2E-21 131.1 12.9 128 97-237 11-143 (192)
106 1dce_A Protein (RAB geranylger 99.7 6.3E-21 2.2E-25 176.9 -11.0 103 142-258 442-547 (567)
107 3goz_A Leucine-rich repeat-con 99.7 7.1E-19 2.4E-23 154.3 2.2 182 71-258 23-239 (362)
108 3goz_A Leucine-rich repeat-con 99.7 6.8E-19 2.3E-23 154.4 1.5 181 71-257 52-266 (362)
109 4b8c_D Glucose-repressible alc 99.7 1E-18 3.4E-23 166.5 2.4 178 70-257 224-404 (727)
110 3g06_A SSPH2 (leucine-rich rep 99.7 1.7E-17 5.8E-22 155.3 10.4 137 48-206 12-155 (622)
111 2je0_A Acidic leucine-rich nuc 99.7 1.1E-17 3.8E-22 128.3 7.2 124 71-200 18-148 (149)
112 2o6r_A Variable lymphocyte rec 99.7 2.1E-16 7.2E-21 124.6 13.7 134 56-208 5-140 (177)
113 2ell_A Acidic leucine-rich nuc 99.7 2.3E-17 7.7E-22 129.1 8.0 130 71-206 25-161 (168)
114 1m9s_A Internalin B; cell inva 99.7 5.7E-17 1.9E-21 151.3 12.0 164 72-258 23-189 (605)
115 2ell_A Acidic leucine-rich nuc 99.7 5.7E-17 2E-21 126.7 9.7 134 91-233 21-160 (168)
116 3g06_A SSPH2 (leucine-rich rep 99.7 2.3E-16 7.9E-21 147.6 14.4 163 70-258 81-298 (622)
117 2je0_A Acidic leucine-rich nuc 99.7 8.4E-17 2.9E-21 123.3 9.2 109 92-206 15-127 (149)
118 3cvr_A Invasion plasmid antige 99.7 1.4E-16 4.9E-21 147.5 11.4 145 70-244 100-254 (571)
119 2wfh_A SLIT homolog 2 protein 99.7 7.3E-16 2.5E-20 123.6 13.2 126 74-207 14-141 (193)
120 1z7x_W Ribonuclease inhibitor; 99.7 1.9E-18 6.4E-23 155.6 -2.3 177 71-257 200-411 (461)
121 1xeu_A Internalin C; cellular 99.7 8.7E-16 3E-20 129.0 12.2 163 71-257 20-185 (263)
122 1ds9_A Outer arm dynein; leuci 99.6 2.5E-18 8.4E-23 138.4 -4.4 155 71-233 19-185 (198)
123 2wfh_A SLIT homolog 2 protein 99.6 2.3E-15 8E-20 120.6 13.1 124 97-234 13-140 (193)
124 2o6r_A Variable lymphocyte rec 99.6 4.8E-15 1.6E-19 116.8 14.2 129 96-237 9-141 (177)
125 1z7x_W Ribonuclease inhibitor; 99.6 1.6E-17 5.5E-22 149.5 -1.4 180 71-256 86-296 (461)
126 1ds9_A Outer arm dynein; leuci 99.6 1.5E-18 5.1E-23 139.6 -8.2 152 90-257 14-185 (198)
127 1a9n_A U2A', U2A'; complex (nu 99.6 6.2E-15 2.1E-19 116.2 9.1 127 89-227 14-145 (176)
128 1dce_A Protein (RAB geranylger 99.6 8.6E-15 3E-19 135.7 11.0 153 84-251 399-567 (567)
129 3g39_A Variable lymphocyte rec 99.5 4.4E-14 1.5E-18 110.8 10.6 102 73-181 12-115 (170)
130 1a9n_A U2A', U2A'; complex (nu 99.5 1.5E-14 5.1E-19 113.9 7.8 126 71-206 20-154 (176)
131 4ay9_X Follicle-stimulating ho 99.5 4E-14 1.4E-18 123.4 10.4 172 70-254 54-256 (350)
132 2r9u_A Variable lymphocyte rec 99.5 1.5E-13 5.3E-18 108.2 11.3 102 73-181 15-118 (174)
133 3g39_A Variable lymphocyte rec 99.5 2.1E-13 7.2E-18 106.9 11.0 105 96-207 11-117 (170)
134 2r9u_A Variable lymphocyte rec 99.5 5.3E-13 1.8E-17 105.1 11.1 104 97-207 15-120 (174)
135 2ifg_A High affinity nerve gro 99.4 1.9E-12 6.6E-17 112.3 9.9 106 58-182 8-117 (347)
136 3ogk_B Coronatine-insensitive 99.3 1.6E-13 5.3E-18 127.1 1.8 172 71-252 193-411 (592)
137 2ifg_A High affinity nerve gro 99.3 4.3E-12 1.5E-16 110.1 10.2 104 97-207 11-118 (347)
138 3ogk_B Coronatine-insensitive 99.3 1.5E-13 5E-18 127.3 0.2 149 72-227 140-323 (592)
139 3un9_A NLR family member X1; l 99.2 3.2E-13 1.1E-17 119.0 -3.0 165 71-241 73-260 (372)
140 2p1m_B Transport inhibitor res 99.2 5.5E-13 1.9E-17 123.4 -2.8 128 71-202 106-245 (594)
141 3un9_A NLR family member X1; l 99.2 3.7E-13 1.3E-17 118.6 -5.4 82 173-256 160-251 (372)
142 2p1m_B Transport inhibitor res 99.1 1.5E-12 5.3E-17 120.4 -4.5 174 71-256 290-518 (594)
143 3sb4_A Hypothetical leucine ri 99.0 8.4E-10 2.9E-14 95.1 10.3 167 71-251 102-328 (329)
144 3sb4_A Hypothetical leucine ri 99.0 4.7E-10 1.6E-14 96.7 7.2 84 163-257 225-310 (329)
145 3rw6_A Nuclear RNA export fact 99.0 2.2E-12 7.5E-17 108.2 -8.4 170 56-233 76-262 (267)
146 2ra8_A Uncharacterized protein 98.9 3.6E-10 1.2E-14 99.0 4.0 175 71-257 108-320 (362)
147 2ra8_A Uncharacterized protein 98.7 7.5E-09 2.6E-13 90.6 3.3 175 70-255 139-341 (362)
148 4fdw_A Leucine rich hypothetic 98.6 6.3E-07 2.2E-11 79.4 13.4 78 71-150 158-235 (401)
149 3rw6_A Nuclear RNA export fact 98.5 4.7E-08 1.6E-12 81.8 2.8 105 137-251 137-258 (267)
150 1io0_A Tropomodulin; LRR prote 98.4 1.9E-08 6.4E-13 79.6 -1.7 65 137-205 89-164 (185)
151 4fdw_A Leucine rich hypothetic 98.2 8.6E-06 3E-10 72.0 11.9 122 70-200 180-308 (401)
152 1io0_A Tropomodulin; LRR prote 98.2 2.3E-07 7.7E-12 73.3 1.5 113 138-256 33-163 (185)
153 3e4g_A ATP synthase subunit S, 97.1 0.00039 1.3E-08 54.2 4.3 85 133-227 53-144 (176)
154 3e4g_A ATP synthase subunit S, 97.1 0.00021 7.3E-09 55.7 2.4 65 137-205 81-153 (176)
155 4fs7_A Uncharacterized protein 96.7 0.012 4.2E-07 51.2 10.5 169 71-254 163-376 (394)
156 4fs7_A Uncharacterized protein 96.5 0.044 1.5E-06 47.6 12.9 122 71-202 72-218 (394)
157 3rfe_A Platelet glycoprotein I 96.3 0.0079 2.7E-07 44.2 5.8 34 142-180 32-67 (130)
158 4gt6_A Cell surface protein; l 96.2 0.04 1.4E-06 48.0 10.8 127 113-256 260-390 (394)
159 4gt6_A Cell surface protein; l 96.0 0.028 9.5E-07 48.9 9.1 122 88-227 259-383 (394)
160 4h09_A Hypothetical leucine ri 95.9 0.13 4.5E-06 44.2 12.6 58 137-200 259-318 (379)
161 3rfe_A Platelet glycoprotein I 95.4 0.019 6.3E-07 42.2 4.6 32 173-206 13-45 (130)
162 4h09_A Hypothetical leucine ri 95.4 0.092 3.1E-06 45.2 9.8 106 89-202 235-343 (379)
163 1pgv_A TMD-1, tropomodulin TMD 95.1 0.0062 2.1E-07 48.2 1.4 110 140-255 40-168 (197)
164 1pgv_A TMD-1, tropomodulin TMD 92.3 0.088 3E-06 41.5 3.2 90 159-254 36-136 (197)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=9.8e-38 Score=269.75 Aligned_cols=218 Identities=27% Similarity=0.415 Sum_probs=185.6
Q ss_pred CChHH--HHHHHHHhCCCCCCCCCCCCCCCCCcc--ccceeeCCCC--CcEEEEEcCCCCCcc--cCCccCCCCCCCCEE
Q 039201 28 SNKTD--HLLAIKSQLQDPLGPTSSWKASLNLCQ--WTGVTCSHRH--PRVTKLDLRSKSIGG--FLSPFVGNPSFVRVI 99 (258)
Q Consensus 28 ~~~~~--aL~~~~~~~~~~~~~~~~w~~~~~~c~--w~gv~c~~~~--~~v~~l~l~~~~l~g--~lp~~~~~l~~L~~L 99 (258)
|.+.| ||++||+++.+|. .+.+|..+.+||. |.||+|+... ++|++|+++++++.| .+|+.+.++++|++|
T Consensus 3 c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L 81 (313)
T 1ogq_A 3 CNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFL 81 (313)
T ss_dssp SCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEE
T ss_pred CCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCee
Confidence 45444 9999999998876 6789988889998 9999998654 599999999999999 899999999999999
Q ss_pred EccC-CCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecC
Q 039201 100 VLAN-NSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKS 176 (258)
Q Consensus 100 ~Ls~-n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~ 176 (258)
++++ |.+.+.+|..++++++|++|+ ++|.+++.+|..+.++++|++|++++|.+++.+| .+.++++|++ ++++
T Consensus 82 ~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~----L~L~ 157 (313)
T 1ogq_A 82 YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG----ITFD 157 (313)
T ss_dssp EEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE----EECC
T ss_pred eCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCe----EECc
Confidence 9995 999999999999999999999 8899999999999999999999999999999999 8999999999 9999
Q ss_pred CCccccccCccccCCC-CCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccC
Q 039201 177 KNRFTGKLGIDFNSLI-NLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSE 253 (258)
Q Consensus 177 ~n~~~g~ip~~~~~l~-~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~ 253 (258)
+|+++|.+|..++.++ +|++|++++|.+++.+| ..++.++ |++| ++|++++.+|..+..+++|++|++++
T Consensus 158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~------~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 230 (313)
T 1ogq_A 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP------PTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230 (313)
T ss_dssp SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC------GGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCS
T ss_pred CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCC------hHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCC
Confidence 9999999999999998 99999999999998754 4444443 5544 56666655565555555666666655
Q ss_pred CcCC
Q 039201 254 NNLN 257 (258)
Q Consensus 254 N~l~ 257 (258)
|+++
T Consensus 231 N~l~ 234 (313)
T 1ogq_A 231 NSLA 234 (313)
T ss_dssp SEEC
T ss_pred Ccee
Confidence 5554
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.1e-34 Score=276.24 Aligned_cols=212 Identities=26% Similarity=0.358 Sum_probs=151.2
Q ss_pred hHHHHHHHHHhCCCCCCCCCCCCCCCCCccccceeeCCCCCcEEEEEcCCCCCccc---CC-------------------
Q 039201 30 KTDHLLAIKSQLQDPLGPTSSWKASLNLCQWTGVTCSHRHPRVTKLDLRSKSIGGF---LS------------------- 87 (258)
Q Consensus 30 ~~~aL~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~---lp------------------- 87 (258)
|++||++||+++.||. .+.+|..+++||.|+||+|+ .++|++|+++++++.|. +|
T Consensus 13 ~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~ 89 (768)
T 3rgz_A 13 EIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHI 89 (768)
T ss_dssp HHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCE
T ss_pred HHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCc
Confidence 3449999999999887 88999988899999999998 35999999999999887 54
Q ss_pred ----ccCCCCCCCCEEEccCCCCcCCCCc--ccCCCCCCcEEc-CCCccCCCCCccc-CCCCCCCEEEccccccccccc-
Q 039201 88 ----PFVGNPSFVRVIVLANNSYYGEIPN--EVGCLSRLETLI-GGYRLGGKIPESL-GQLGSINYLILAENNFSGTLR- 158 (258)
Q Consensus 88 ----~~~~~l~~L~~L~Ls~n~l~g~~p~--~l~~l~~L~~L~-~~n~l~g~ip~~~-~~l~~L~~L~L~~n~l~g~~p- 158 (258)
+.++.+++|++|+|++|.+.|.+|. .++++++|++|+ ++|.+.+.+|..+ .++++|++|++++|++++..|
T Consensus 90 ~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 169 (768)
T 3rgz_A 90 NGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169 (768)
T ss_dssp EECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHH
T ss_pred CCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCCh
Confidence 4566777777777777777777776 777777777777 6677777777665 677777777777777777666
Q ss_pred c---ccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccc
Q 039201 159 S---IFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLT 233 (258)
Q Consensus 159 ~---~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~ 233 (258)
. +.++++|++ +++++|++++.+|. +.+++|++|++++|.+++.+| . ++++++|++| ++|+++
T Consensus 170 ~~~~~~~l~~L~~----L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~------~-l~~l~~L~~L~Ls~n~l~ 236 (768)
T 3rgz_A 170 GWVLSDGCGELKH----LAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIP------F-LGDCSALQHLDISGNKLS 236 (768)
T ss_dssp HHHHTTCCTTCCE----EECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCC------B-CTTCCSCCEEECCSSCCC
T ss_pred hhhhhccCCCCCE----EECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCc------c-cccCCCCCEEECcCCcCC
Confidence 4 566666666 55555555554443 455566666666666655422 2 5555555555 566666
Q ss_pred cccchhhcCCCCCCeEeccCCcCC
Q 039201 234 GTIPDTTGELRNLQAPDLSENNLN 257 (258)
Q Consensus 234 g~ip~~l~~l~~L~~L~Ls~N~l~ 257 (258)
|.+|..++.+++|++|++++|+++
T Consensus 237 ~~~~~~l~~l~~L~~L~Ls~n~l~ 260 (768)
T 3rgz_A 237 GDFSRAISTCTELKLLNISSNQFV 260 (768)
T ss_dssp SCHHHHTTTCSSCCEEECCSSCCE
T ss_pred CcccHHHhcCCCCCEEECCCCccc
Confidence 666666666666666666666554
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.7e-34 Score=271.62 Aligned_cols=212 Identities=23% Similarity=0.317 Sum_probs=173.8
Q ss_pred HHHHHHHHHhCCCCCCC-C-------CCCCCCCCCccc---cceeeCCCCCcEEEEEcCCCCCcccCCccCCCCCCCCEE
Q 039201 31 TDHLLAIKSQLQDPLGP-T-------SSWKASLNLCQW---TGVTCSHRHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVI 99 (258)
Q Consensus 31 ~~aL~~~~~~~~~~~~~-~-------~~w~~~~~~c~w---~gv~c~~~~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L 99 (258)
.+||.++++++.++.+. . .+|..+.++|.| .||+|+.. ++|++|+|+++++.|.+|++++++++|++|
T Consensus 32 ~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L 110 (636)
T 4eco_A 32 YLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTELEVL 110 (636)
T ss_dssp HHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCTTCCEE
T ss_pred HHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCccceEE
Confidence 33999999999655332 2 379988999999 99999876 599999999999999999999999999999
Q ss_pred EccCCCC-------------------------------------------------------------------------
Q 039201 100 VLANNSY------------------------------------------------------------------------- 106 (258)
Q Consensus 100 ~Ls~n~l------------------------------------------------------------------------- 106 (258)
+|++|.+
T Consensus 111 ~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~ 190 (636)
T 4eco_A 111 ALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQ 190 (636)
T ss_dssp ESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTC
T ss_pred ECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhcc
Confidence 9999843
Q ss_pred -----cCCCCcccCCCCCCcEEc-CCCccCCC-----------------CCcccC--CCCCCCEEEccccccccccc-cc
Q 039201 107 -----YGEIPNEVGCLSRLETLI-GGYRLGGK-----------------IPESLG--QLGSINYLILAENNFSGTLR-SI 160 (258)
Q Consensus 107 -----~g~~p~~l~~l~~L~~L~-~~n~l~g~-----------------ip~~~~--~l~~L~~L~L~~n~l~g~~p-~~ 160 (258)
+| +|+.++++++|++|+ ++|.++|. +|+.++ ++++|++|++++|++.|.+| .+
T Consensus 191 ~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l 269 (636)
T 4eco_A 191 LSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL 269 (636)
T ss_dssp CSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT
T ss_pred ccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH
Confidence 34 788888899999998 78888886 888888 89999999999998888888 88
Q ss_pred cCCCCcceecceeecCCCc-ccc-ccCccccCC------CCCCeEecCCCcCCccCCCCchhhh--hhcCCCCCccc--c
Q 039201 161 FNISSLEFQSSETEKSKNR-FTG-KLGIDFNSL------INLARLNLGQKNLGIGTTSDLDFIT--LLRNCSKLKTL--Q 228 (258)
Q Consensus 161 ~~l~~L~~l~l~L~l~~n~-~~g-~ip~~~~~l------~~L~~L~ls~N~l~g~~p~~~~~~~--~l~~l~~L~~L--~ 228 (258)
+++++|++ |++++|+ ++| .+|..++++ ++|++|++++|.++ . +|. .++++++|++| +
T Consensus 270 ~~l~~L~~----L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~------ip~~~~l~~l~~L~~L~L~ 338 (636)
T 4eco_A 270 KALPEMQL----INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-T------FPVETSLQKMKKLGMLECL 338 (636)
T ss_dssp TTCSSCCE----EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-S------CCCHHHHTTCTTCCEEECC
T ss_pred hcCCCCCE----EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-c------cCchhhhccCCCCCEEeCc
Confidence 88889998 8888888 888 888888776 88888888888887 4 345 67777777766 6
Q ss_pred ccccccccchhhcCCCCCCeEeccCCcC
Q 039201 229 YNQLTGTIPDTTGELRNLQAPDLSENNL 256 (258)
Q Consensus 229 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 256 (258)
+|+++|.+| .++.+++|++|++++|++
T Consensus 339 ~N~l~g~ip-~~~~l~~L~~L~L~~N~l 365 (636)
T 4eco_A 339 YNQLEGKLP-AFGSEIKLASLNLAYNQI 365 (636)
T ss_dssp SCCCEEECC-CCEEEEEESEEECCSSEE
T ss_pred CCcCccchh-hhCCCCCCCEEECCCCcc
Confidence 777777777 666666666666666654
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.98 E-value=9e-33 Score=240.22 Aligned_cols=222 Identities=18% Similarity=0.197 Sum_probs=155.4
Q ss_pred CChHHHHHHHHHhC-CCCCCCCCCC----CCCCCCccccceeeCC--------CCCcEEEEEcCCCCCcccCCccCCCCC
Q 039201 28 SNKTDHLLAIKSQL-QDPLGPTSSW----KASLNLCQWTGVTCSH--------RHPRVTKLDLRSKSIGGFLSPFVGNPS 94 (258)
Q Consensus 28 ~~~~~aL~~~~~~~-~~~~~~~~~w----~~~~~~c~w~gv~c~~--------~~~~v~~l~l~~~~l~g~lp~~~~~l~ 94 (258)
.++.+||++||+.+ .++.+....| ....++|.|.|+.|.. ..++|+.|+++++++. .+|+.++.++
T Consensus 26 ~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~l~ 104 (328)
T 4fcg_A 26 RPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLS 104 (328)
T ss_dssp CCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGGGT
T ss_pred chHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhhCC
Confidence 45666999999998 6776666788 4456899999999952 3348899999999887 7788888888
Q ss_pred CCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccC---------C
Q 039201 95 FVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFN---------I 163 (258)
Q Consensus 95 ~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~---------l 163 (258)
+|++|++++|.++ .+|..++++++|++|+ ++|.+. .+|+.++++++|++|++++|++.+.+| .++. +
T Consensus 105 ~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l 182 (328)
T 4fcg_A 105 HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182 (328)
T ss_dssp TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence 9999999998888 8888888888888888 667777 778888888888888888877777777 5543 7
Q ss_pred CCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCc------------------hhhhhhcCCCCCc
Q 039201 164 SSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDL------------------DFITLLRNCSKLK 225 (258)
Q Consensus 164 ~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~------------------~~~~~l~~l~~L~ 225 (258)
++|++ |++++|+++ .+|..++.+++|++|++++|.+++ +|..+ .+|..++++++|+
T Consensus 183 ~~L~~----L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 256 (328)
T 4fcg_A 183 VNLQS----LRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256 (328)
T ss_dssp TTCCE----EEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCC
T ss_pred CCCCE----EECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCC
Confidence 77777 555555555 555555555555555555555554 11100 0233445555555
Q ss_pred cc--cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201 226 TL--QYNQLTGTIPDTTGELRNLQAPDLSENNLNA 258 (258)
Q Consensus 226 ~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G 258 (258)
+| ++|++.+.+|..++.+++|++|++++|++.|
T Consensus 257 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 291 (328)
T 4fcg_A 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291 (328)
T ss_dssp EEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC
T ss_pred EEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh
Confidence 55 5556666666666666666666666665543
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1.3e-32 Score=265.54 Aligned_cols=207 Identities=20% Similarity=0.278 Sum_probs=155.8
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCCC-----CCC--ccc------------cceeeCCCCCcEEEEEcCCCCCcccCCccCC
Q 039201 31 TDHLLAIKSQLQDPLGPTSSWKAS-----LNL--CQW------------TGVTCSHRHPRVTKLDLRSKSIGGFLSPFVG 91 (258)
Q Consensus 31 ~~aL~~~~~~~~~~~~~~~~w~~~-----~~~--c~w------------~gv~c~~~~~~v~~l~l~~~~l~g~lp~~~~ 91 (258)
.+||++||+++.+| +|..+ .++ |.| .||+|+.. ++|+.|+|+++++.|.+|+.++
T Consensus 271 ~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~-~~V~~L~Ls~~~L~G~ip~~l~ 344 (876)
T 4ecn_A 271 YKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN-GRVTGLSLAGFGAKGRVPDAIG 344 (876)
T ss_dssp HHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT-SCEEEEECTTTCCEEEECGGGG
T ss_pred HHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecCC-CCEEEEECccCCCCCcCchHHh
Confidence 33999999999776 45433 245 999 99999874 4999999999999999999999
Q ss_pred CCCCCCEEEc-cCCCCcCC-------------------------------------------------------------
Q 039201 92 NPSFVRVIVL-ANNSYYGE------------------------------------------------------------- 109 (258)
Q Consensus 92 ~l~~L~~L~L-s~n~l~g~------------------------------------------------------------- 109 (258)
++++|++|+| ++|.+.|.
T Consensus 345 ~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~ 424 (876)
T 4ecn_A 345 QLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRIS 424 (876)
T ss_dssp GCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCC
T ss_pred ccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccc
Confidence 9999999999 77766554
Q ss_pred ---------------CCcccCCCCCCcEEc-CCCccCC-----------------CCCcccC--CCCCCCEEEccccccc
Q 039201 110 ---------------IPNEVGCLSRLETLI-GGYRLGG-----------------KIPESLG--QLGSINYLILAENNFS 154 (258)
Q Consensus 110 ---------------~p~~l~~l~~L~~L~-~~n~l~g-----------------~ip~~~~--~l~~L~~L~L~~n~l~ 154 (258)
+|..++++++|++|+ ++|.++| .+|+.++ ++++|++|+|++|++.
T Consensus 425 l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~ 504 (876)
T 4ecn_A 425 LKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM 504 (876)
T ss_dssp CCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC
T ss_pred hhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCC
Confidence 677777888888888 7777777 3788777 8888888888888888
Q ss_pred cccc-cccCCCCcceecceeecCCCc-ccc-ccCccccCCC-------CCCeEecCCCcCCccCCCCchhhh--hhcCCC
Q 039201 155 GTLR-SIFNISSLEFQSSETEKSKNR-FTG-KLGIDFNSLI-------NLARLNLGQKNLGIGTTSDLDFIT--LLRNCS 222 (258)
Q Consensus 155 g~~p-~~~~l~~L~~l~l~L~l~~n~-~~g-~ip~~~~~l~-------~L~~L~ls~N~l~g~~p~~~~~~~--~l~~l~ 222 (258)
|.+| .++++++|++ |++++|+ ++| .+|..+++++ +|++|++++|.++ .+ |. .+++++
T Consensus 505 ~~iP~~l~~L~~L~~----L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~i------p~~~~l~~L~ 573 (876)
T 4ecn_A 505 TQLPDFLYDLPELQS----LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EF------PASASLQKMV 573 (876)
T ss_dssp CSCCGGGGGCSSCCE----EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BC------CCHHHHTTCT
T ss_pred ccChHHHhCCCCCCE----EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-cc------CChhhhhcCC
Confidence 8888 7888888888 7788887 777 7777666555 7777777777777 43 33 455555
Q ss_pred CCccc--cccccccccchhhcCCCCCCeEeccCCcC
Q 039201 223 KLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNL 256 (258)
Q Consensus 223 ~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 256 (258)
+|+.| ++|+++ .+| .++.+++|+.|+|++|++
T Consensus 574 ~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l 607 (876)
T 4ecn_A 574 KLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQI 607 (876)
T ss_dssp TCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCC
T ss_pred CCCEEECCCCCcc-cch-hhcCCCcceEEECcCCcc
Confidence 55555 555555 555 555555555555555554
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=2.1e-28 Score=234.64 Aligned_cols=178 Identities=31% Similarity=0.431 Sum_probs=130.3
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA 149 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~ 149 (258)
+++.+++++|.+.|.+|..+..+++|++|++++|.+.|.+|..++++++|++|+ ++|.++|.+|..++++++|++|+++
T Consensus 467 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence 456666666666666666666666666666666666666666666666666666 6666666666666667777777777
Q ss_pred ccccccccc-cccC------------------------------------------------------------------
Q 039201 150 ENNFSGTLR-SIFN------------------------------------------------------------------ 162 (258)
Q Consensus 150 ~n~l~g~~p-~~~~------------------------------------------------------------------ 162 (258)
+|+++|.+| .+++
T Consensus 547 ~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~ 626 (768)
T 3rgz_A 547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626 (768)
T ss_dssp SSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCC
T ss_pred CCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCch
Confidence 766666665 4322
Q ss_pred ----CCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--ccccccccc
Q 039201 163 ----ISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTI 236 (258)
Q Consensus 163 ----l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~i 236 (258)
+++|++ +++++|+++|.+|..++++++|++|++++|.++|. +|..++++++|+.| ++|+++|.+
T Consensus 627 ~~~~l~~L~~----LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~------ip~~l~~L~~L~~LdLs~N~l~g~i 696 (768)
T 3rgz_A 627 TFDNNGSMMF----LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS------IPDEVGDLRGLNILDLSSNKLDGRI 696 (768)
T ss_dssp SCSSSBCCCE----EECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSC------CCGGGGGCTTCCEEECCSSCCEECC
T ss_pred hhhccccccE----EECcCCcccccCCHHHhccccCCEEeCcCCccCCC------CChHHhCCCCCCEEECCCCcccCcC
Confidence 234455 77888888888888888888888888888888887 45778888888888 899999999
Q ss_pred chhhcCCCCCCeEeccCCcCCC
Q 039201 237 PDTTGELRNLQAPDLSENNLNA 258 (258)
Q Consensus 237 p~~l~~l~~L~~L~Ls~N~l~G 258 (258)
|..++.+++|++||+++|+++|
T Consensus 697 p~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 697 PQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp CGGGGGCCCCSEEECCSSEEEE
T ss_pred ChHHhCCCCCCEEECcCCcccc
Confidence 9999999999999999998876
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=7.9e-28 Score=207.60 Aligned_cols=184 Identities=24% Similarity=0.324 Sum_probs=143.7
Q ss_pred CcEEEEEcCC-CCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEE
Q 039201 70 PRVTKLDLRS-KSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLI 147 (258)
Q Consensus 70 ~~v~~l~l~~-~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~ 147 (258)
++++.|++++ |++.+.+|+.++++++|++|++++|.+++.+|..+.++++|++|+ ++|.+.+.+|..+.++++|++|+
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 155 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence 4788999985 888888898899999999999999999888898888999999998 88888888888888889999999
Q ss_pred ccccccccccc-cccCCC-CcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCch------------
Q 039201 148 LAENNFSGTLR-SIFNIS-SLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLD------------ 213 (258)
Q Consensus 148 L~~n~l~g~~p-~~~~l~-~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~------------ 213 (258)
+++|+++|.+| .+++++ +|++ +++++|++++.+|..++.++ |++|++++|.+++.+|..+.
T Consensus 156 L~~N~l~~~~p~~l~~l~~~L~~----L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 230 (313)
T 1ogq_A 156 FDGNRISGAIPDSYGSFSKLFTS----MTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230 (313)
T ss_dssp CCSSCCEEECCGGGGCCCTTCCE----EECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCS
T ss_pred CcCCcccCcCCHHHhhhhhcCcE----EECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCC
Confidence 99998888888 888887 8888 66666666655555555554 55555555555443332110
Q ss_pred -----hhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201 214 -----FITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLNA 258 (258)
Q Consensus 214 -----~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G 258 (258)
.++.+..+++|++| ++|+++|.+|..+..+++|++|++++|+++|
T Consensus 231 N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 282 (313)
T 1ogq_A 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282 (313)
T ss_dssp SEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred CceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccc
Confidence 23346677777777 8899999999999999999999999998875
No 8
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=3e-25 Score=187.34 Aligned_cols=177 Identities=23% Similarity=0.196 Sum_probs=136.8
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA 149 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~ 149 (258)
.++.|++++|++.+..+..+..+++|++|++++|.++...+..+.++++|++|+ ++|.+.+..+..+.++++|++|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 477788888888765556788888888888888888743334457788888888 6677776555567888888888888
Q ss_pred ccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc-
Q 039201 150 ENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL- 227 (258)
Q Consensus 150 ~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L- 227 (258)
+|++++..| .+.++++|++ |++++|++++..+..+..+++|++|++++|.+++. .+..+.++++|++|
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~----L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~ 187 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTY----LSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV------PEGAFDKLTELKTLK 187 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCE----EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC------CTTTTTTCTTCCEEE
T ss_pred CCccCeeCHHHhCcCcCCCE----EECCCCcCCccCHhHccCCcccceeEecCCcCcEe------ChhHhccCCCcCEEE
Confidence 888886666 6788888888 88888888865555578888899999988888874 22356777888877
Q ss_pred -cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201 228 -QYNQLTGTIPDTTGELRNLQAPDLSENNLN 257 (258)
Q Consensus 228 -~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 257 (258)
++|++++..+..+..+++|+.|++++|+++
T Consensus 188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 188 LDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 888998655556888899999999999875
No 9
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=3e-26 Score=199.08 Aligned_cols=174 Identities=16% Similarity=0.152 Sum_probs=113.9
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCc--------------
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPE-------------- 135 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~-------------- 135 (258)
+++.|++++|.+. .+|..++.+++|++|++++|.++ .+|..++++++|++|+ ++|++.+.+|.
T Consensus 105 ~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l 182 (328)
T 4fcg_A 105 HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182 (328)
T ss_dssp TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence 4555666666555 55555555666666666666555 5555555555555555 44444444444
Q ss_pred ------------------ccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCe
Q 039201 136 ------------------SLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLAR 196 (258)
Q Consensus 136 ------------------~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~ 196 (258)
.++++++|++|++++|++++ +| .+..+++|++ |++++|++.+.+|..++.+++|++
T Consensus 183 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~----L~Ls~n~~~~~~p~~~~~l~~L~~ 257 (328)
T 4fcg_A 183 VNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEE----LDLRGCTALRNYPPIFGGRAPLKR 257 (328)
T ss_dssp TTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCE----EECTTCTTCCBCCCCTTCCCCCCE
T ss_pred CCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCE----EECcCCcchhhhHHHhcCCCCCCE
Confidence 44445555555555555542 33 4445555555 666666666666666666777777
Q ss_pred EecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201 197 LNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLN 257 (258)
Q Consensus 197 L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 257 (258)
|++++|.+.+. +|..++++++|++| ++|++.|.+|++++++++|+.+++..|.+.
T Consensus 258 L~L~~n~~~~~------~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 258 LILKDCSNLLT------LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp EECTTCTTCCB------CCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred EECCCCCchhh------cchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 77777666665 45668888889888 899999999999999999999999988654
No 10
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.93 E-value=1.9e-25 Score=186.58 Aligned_cols=187 Identities=19% Similarity=0.153 Sum_probs=162.1
Q ss_pred CCccccceeeCCCCCcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCC
Q 039201 56 NLCQWTGVTCSHRHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIP 134 (258)
Q Consensus 56 ~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip 134 (258)
+||.|.|.+|.. ..+.+++++++++ .+|..+. +.+++|++++|.+.+..|..+.++++|++|+ ++|.+.+..|
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCC---CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 578999999964 4567999999987 5776555 6899999999999988888899999999999 8889998778
Q ss_pred cccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCch
Q 039201 135 ESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLD 213 (258)
Q Consensus 135 ~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~ 213 (258)
..+.++++|++|++++|++++..+ .+..+++|++ |++++|++++..+..+..+++|++|++++|.+++.
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~----L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------ 146 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDK----LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI------ 146 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE----EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC------
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCE----EEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc------
Confidence 889999999999999999996666 7889999999 99999999966666678999999999999999974
Q ss_pred hhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201 214 FITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLNA 258 (258)
Q Consensus 214 ~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G 258 (258)
.+..++++++|++| ++|++++..|..+..+++|++|++++|++++
T Consensus 147 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 22367888888888 9999997777789999999999999999874
No 11
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=2.9e-24 Score=182.39 Aligned_cols=176 Identities=19% Similarity=0.157 Sum_probs=97.0
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCc-cCCCCCcccCCCCCCCEEEc
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYR-LGGKIPESLGQLGSINYLIL 148 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~-l~g~ip~~~~~l~~L~~L~L 148 (258)
+++.|+++++.+++..+..+..+++|++|++++|.+++..|..+.++++|++|+ ++|. +....|..+.++++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 566666666666655555566666666666666666655566666666666666 4443 44333555666666666666
Q ss_pred cccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc
Q 039201 149 AENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL 227 (258)
Q Consensus 149 ~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L 227 (258)
++|.+++..| .+.++++|++ +++++|++++..+..++.+++|++|++++|.+++.. +..+.++++|++|
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~----L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L 182 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQY----LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP------ERAFRGLHSLDRL 182 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCE----EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC------TTTTTTCTTCCEE
T ss_pred CCCcCCEECHhHhhCCcCCCE----EECCCCcccccCHhHhccCCCccEEECCCCcccccC------HHHhcCccccCEE
Confidence 6666665545 5556666666 555666655444444555556666666666555421 1123334444443
Q ss_pred --cccccccccchhhcCCCCCCeEeccCCcC
Q 039201 228 --QYNQLTGTIPDTTGELRNLQAPDLSENNL 256 (258)
Q Consensus 228 --~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 256 (258)
++|++++..|..+..+++|+.|++++|++
T Consensus 183 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 213 (285)
T 1ozn_A 183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213 (285)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcccccCHhHccCcccccEeeCCCCcC
Confidence 44444444444444444444444444444
No 12
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=1.8e-24 Score=194.88 Aligned_cols=151 Identities=18% Similarity=0.169 Sum_probs=125.3
Q ss_pred CCccccc--eeeCCCC--------CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCC-cccCCCCCCcEEc
Q 039201 56 NLCQWTG--VTCSHRH--------PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIP-NEVGCLSRLETLI 124 (258)
Q Consensus 56 ~~c~w~g--v~c~~~~--------~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p-~~l~~l~~L~~L~ 124 (258)
..|.|.+ +.|+... ++++.|++++|.+.+..|..+.++++|++|++++|.+.+.+| ..+.++++|++|+
T Consensus 6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~ 85 (455)
T 3v47_A 6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK 85 (455)
T ss_dssp -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEE
T ss_pred ceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEe
Confidence 4565555 7776432 479999999999998888899999999999999999987775 5688999999999
Q ss_pred -CCCccCCCCCcccCCCCCCCEEEccccccccccc-c--ccCCCCcceecceeecCCCccccccCcc-ccCCCCCCeEec
Q 039201 125 -GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-S--IFNISSLEFQSSETEKSKNRFTGKLGID-FNSLINLARLNL 199 (258)
Q Consensus 125 -~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~--~~~l~~L~~l~l~L~l~~n~~~g~ip~~-~~~l~~L~~L~l 199 (258)
++|.+++..|..++++++|++|++++|++++.+| . +.++++|++ |++++|++++..|.. ++.+++|++|++
T Consensus 86 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~----L~L~~n~l~~~~~~~~~~~l~~L~~L~L 161 (455)
T 3v47_A 86 LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM----LVLRDNNIKKIQPASFFLNMRRFHVLDL 161 (455)
T ss_dssp CTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCE----EECCSSBCCSCCCCGGGGGCTTCCEEEC
T ss_pred CCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCE----EECCCCccCccCcccccCCCCcccEEeC
Confidence 8888888888899999999999999999988666 4 888999999 888888888777766 778888888888
Q ss_pred CCCcCCccCCC
Q 039201 200 GQKNLGIGTTS 210 (258)
Q Consensus 200 s~N~l~g~~p~ 210 (258)
++|.+++..|.
T Consensus 162 ~~n~l~~~~~~ 172 (455)
T 3v47_A 162 TFNKVKSICEE 172 (455)
T ss_dssp TTCCBSCCCTT
T ss_pred CCCcccccChh
Confidence 88888776543
No 13
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.91 E-value=3.5e-24 Score=183.64 Aligned_cols=198 Identities=19% Similarity=0.208 Sum_probs=105.4
Q ss_pred CCccccceeeCCCC---------CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcC--C---------------
Q 039201 56 NLCQWTGVTCSHRH---------PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYG--E--------------- 109 (258)
Q Consensus 56 ~~c~w~gv~c~~~~---------~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g--~--------------- 109 (258)
..|.|.++.|+... ++++.|++++|+++...+..+..+++|++|++++|.++. .
T Consensus 5 C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 45889999997522 368888898888874333446788888888888877652 1
Q ss_pred --------CCcccCCCCCCcEEc-CCCccCCCCC-cccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCC
Q 039201 110 --------IPNEVGCLSRLETLI-GGYRLGGKIP-ESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKN 178 (258)
Q Consensus 110 --------~p~~l~~l~~L~~L~-~~n~l~g~ip-~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n 178 (258)
+|..+.++++|++|+ ++|.+.+..+ ..+..+++|++|++++|.+++..| .+..+++|++ +++++|
T Consensus 85 Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~----L~l~~n 160 (306)
T 2z66_A 85 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV----LKMAGN 160 (306)
T ss_dssp CCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE----EECTTC
T ss_pred CCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE----EECCCC
Confidence 223334444444444 3444443222 244455555555555555554444 4445555555 455555
Q ss_pred cccc-ccCccccCCCCCCeEecCCCcCCccCCCCch------------------hhhhhcCCCCCccc--cccccccccc
Q 039201 179 RFTG-KLGIDFNSLINLARLNLGQKNLGIGTTSDLD------------------FITLLRNCSKLKTL--QYNQLTGTIP 237 (258)
Q Consensus 179 ~~~g-~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~------------------~~~~l~~l~~L~~L--~~N~l~g~ip 237 (258)
.+.+ .+|..+..+++|++|++++|.+++..|..+. .+..+..+++|++| ++|++++..|
T Consensus 161 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 161 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred ccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence 5443 3444445555555555555554443211100 11234444445544 5555555555
Q ss_pred hhhcCCC-CCCeEeccCCcCC
Q 039201 238 DTTGELR-NLQAPDLSENNLN 257 (258)
Q Consensus 238 ~~l~~l~-~L~~L~Ls~N~l~ 257 (258)
..+..++ +|++|++++|+++
T Consensus 241 ~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 241 QELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp SSCCCCCTTCCEEECTTCCEE
T ss_pred HHHHhhhccCCEEEccCCCee
Confidence 5555553 5555555555554
No 14
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=9.1e-24 Score=179.34 Aligned_cols=178 Identities=23% Similarity=0.235 Sum_probs=159.2
Q ss_pred CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCC-CcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEE
Q 039201 70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNS-YYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLI 147 (258)
Q Consensus 70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~-l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~ 147 (258)
++++.|++++|.+.+..|..+..+++|++|++++|. +....|..+.++++|++|+ ++|.+.+..|..+.++++|++|+
T Consensus 56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 135 (285)
T 1ozn_A 56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEE
Confidence 489999999999998888899999999999999998 7655578899999999999 88889887788899999999999
Q ss_pred ccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCcc
Q 039201 148 LAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKT 226 (258)
Q Consensus 148 L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~ 226 (258)
+++|++++..+ .+..+++|++ +++++|++++..+..+..+++|++|++++|.+++. .|..++++++|+.
T Consensus 136 l~~n~l~~~~~~~~~~l~~L~~----L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~ 205 (285)
T 1ozn_A 136 LQDNALQALPDDTFRDLGNLTH----LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV------HPHAFRDLGRLMT 205 (285)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCE----EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE------CTTTTTTCTTCCE
T ss_pred CCCCcccccCHhHhccCCCccE----EECCCCcccccCHHHhcCccccCEEECCCCccccc------CHhHccCcccccE
Confidence 99999996666 6889999999 99999999966666799999999999999999986 3567788888888
Q ss_pred c--cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201 227 L--QYNQLTGTIPDTTGELRNLQAPDLSENNLN 257 (258)
Q Consensus 227 L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 257 (258)
| ++|++++..+..+..+++|++|++++|+++
T Consensus 206 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 206 LYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp EECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred eeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 8 999999766677999999999999999875
No 15
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=1.3e-23 Score=189.70 Aligned_cols=190 Identities=18% Similarity=0.160 Sum_probs=132.1
Q ss_pred ccceeeCCCC---------CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCcc
Q 039201 60 WTGVTCSHRH---------PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRL 129 (258)
Q Consensus 60 w~gv~c~~~~---------~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l 129 (258)
|..+.|.... ++++.|++++|++.+..+..+.++++|++|+|++|.+++..|..+.++++|++|+ ++|.+
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 4567776422 3789999999999988888999999999999999999987778899999999999 77888
Q ss_pred CCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecce---------------------eecCCCccccccCcc
Q 039201 130 GGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSE---------------------TEKSKNRFTGKLGID 187 (258)
Q Consensus 130 ~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~---------------------L~l~~n~~~g~ip~~ 187 (258)
++..+..+.++++|++|++++|++++..+ .+.++++|++|+++ |++++|++++ +| .
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~ 213 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-N 213 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-C
T ss_pred CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-c
Confidence 86555668889999999999998885444 56666666662221 4444444432 22 2
Q ss_pred ccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201 188 FNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLN 257 (258)
Q Consensus 188 ~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 257 (258)
+..+++|++|++++|.+++. .|..+.++++|+.| ++|++++..|..+..+++|+.|+|++|+++
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEI------RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEE------CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred ccccccccEEECcCCcCccc------CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence 44444555555555555443 24455666666665 666666666666666666666666666665
No 16
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=3e-23 Score=175.33 Aligned_cols=184 Identities=23% Similarity=0.189 Sum_probs=144.1
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA 149 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~ 149 (258)
.++.|++++|++++..+..+..+++|++|++++|.+++..+..+.++++|++|+ ++|.+.+..|..+.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 588999999999877666888999999999999998866666788899999998 7788887777888899999999999
Q ss_pred ccccccccc-cccCCCCcceecceeecCCCcccc-ccCccccCCCCCCeEecCCCcCCccCCCCchhhh-----------
Q 039201 150 ENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTG-KLGIDFNSLINLARLNLGQKNLGIGTTSDLDFIT----------- 216 (258)
Q Consensus 150 ~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g-~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~----------- 216 (258)
+|++++..+ .+.++++|++ +++++|++.+ .+|..++.+++|++|++++|.+++..+..+....
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~----L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKE----LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCE----EECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEEC
T ss_pred CCCccccCchhcccCCCCCE----EECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeec
Confidence 999887666 7888899999 8889999876 4688888999999999999988875332221111
Q ss_pred ----------hhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201 217 ----------LLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLNA 258 (258)
Q Consensus 217 ----------~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G 258 (258)
......+|++| ++|++++..+..+..+++|+.|++++|++++
T Consensus 185 s~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 185 SLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred CCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 11112245555 7788885555556888999999999998874
No 17
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=4.4e-23 Score=178.65 Aligned_cols=195 Identities=23% Similarity=0.305 Sum_probs=140.2
Q ss_pred CCccccceeeCCC---------CCcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-C
Q 039201 56 NLCQWTGVTCSHR---------HPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-G 125 (258)
Q Consensus 56 ~~c~w~gv~c~~~---------~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~ 125 (258)
..|.|+.+.|... .+.++.|++++|++++..+..+.++++|++|++++|.+++..|..++++++|++|+ +
T Consensus 29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 4578999998742 24789999999999987777899999999999999999987788899999999998 5
Q ss_pred CCccCCCCCc----------------------ccCCCCCCCEEEcccccccc--ccc-cccCCCCcceecce--------
Q 039201 126 GYRLGGKIPE----------------------SLGQLGSINYLILAENNFSG--TLR-SIFNISSLEFQSSE-------- 172 (258)
Q Consensus 126 ~n~l~g~ip~----------------------~~~~l~~L~~L~L~~n~l~g--~~p-~~~~l~~L~~l~l~-------- 172 (258)
+|.++ .+|. .+.++++|++|++++|.++. ..+ .+.++++|++|+++
T Consensus 109 ~n~l~-~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~ 187 (330)
T 1xku_A 109 KNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP 187 (330)
T ss_dssp SSCCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC
T ss_pred CCcCC-ccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC
Confidence 55554 3443 34556666666666666642 334 45555555553332
Q ss_pred ---------eecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchhhc
Q 039201 173 ---------TEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTG 241 (258)
Q Consensus 173 ---------L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~ 241 (258)
+++++|++++..|..+..+++|++|++++|.+++.. +..+..+++|++| ++|+++ .+|..+.
T Consensus 188 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 260 (330)
T 1xku_A 188 QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD------NGSLANTPHLRELHLNNNKLV-KVPGGLA 260 (330)
T ss_dssp SSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC------TTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred ccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC------hhhccCCCCCCEEECCCCcCc-cCChhhc
Confidence 566666666666666777777777777777776642 2356667777776 778887 7888888
Q ss_pred CCCCCCeEeccCCcCCC
Q 039201 242 ELRNLQAPDLSENNLNA 258 (258)
Q Consensus 242 ~l~~L~~L~Ls~N~l~G 258 (258)
.+++|++|++++|++++
T Consensus 261 ~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 261 DHKYIQVVYLHNNNISA 277 (330)
T ss_dssp TCSSCCEEECCSSCCCC
T ss_pred cCCCcCEEECCCCcCCc
Confidence 88888888888888764
No 18
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.90 E-value=2.9e-23 Score=168.42 Aligned_cols=173 Identities=17% Similarity=0.185 Sum_probs=146.8
Q ss_pred CCccccceeeCCCC---------CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-C
Q 039201 56 NLCQWTGVTCSHRH---------PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-G 125 (258)
Q Consensus 56 ~~c~w~gv~c~~~~---------~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~ 125 (258)
..|.|.++.|.... ++++.|++++|++++..+..+..+++|++|++++|.+++..+..+.++++|++|+ +
T Consensus 5 C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 5 CSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence 45899999997532 3699999999999976666789999999999999999965555678999999999 7
Q ss_pred CCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcC
Q 039201 126 GYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNL 204 (258)
Q Consensus 126 ~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l 204 (258)
+|.+++..+..+.++++|++|++++|++++..+ .+.++++|++ +++++|++++..+..+..+++|++|++++|.+
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~----L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKD----LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE----EECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCE----EECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence 788886656668999999999999999996666 6889999999 99999999976666689999999999999998
Q ss_pred CccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCC
Q 039201 205 GIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRN 245 (258)
Q Consensus 205 ~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~ 245 (258)
.+.. +.|++| +.|+++|.+|.+++.++.
T Consensus 161 ~~~~-------------~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 161 DCTC-------------PGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CCCT-------------TTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ecCC-------------CCHHHHHHHHHhCCceeeccCccccC
Confidence 8742 345555 889999999999988764
No 19
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=4.4e-23 Score=178.88 Aligned_cols=194 Identities=22% Similarity=0.269 Sum_probs=132.3
Q ss_pred CCccccceeeCCC---------CCcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-C
Q 039201 56 NLCQWTGVTCSHR---------HPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-G 125 (258)
Q Consensus 56 ~~c~w~gv~c~~~---------~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~ 125 (258)
..|.|+.+.|... .++++.|++++|.+.+..|..+.++++|++|++++|.+++..|..++++++|++|+ +
T Consensus 31 c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 31 CHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred CcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4478999998742 23789999999999877777899999999999999999877788889999999998 5
Q ss_pred CCccCCCCCcc----------------------cCCCCCCCEEEcccccccc--ccc-cccCCCCcceecce--------
Q 039201 126 GYRLGGKIPES----------------------LGQLGSINYLILAENNFSG--TLR-SIFNISSLEFQSSE-------- 172 (258)
Q Consensus 126 ~n~l~g~ip~~----------------------~~~l~~L~~L~L~~n~l~g--~~p-~~~~l~~L~~l~l~-------- 172 (258)
+|.+. .+|.. +.++++|++|++++|.++. ..| .+..+ +|++|+++
T Consensus 111 ~n~l~-~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 111 KNHLV-EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIP 188 (332)
T ss_dssp SSCCC-SCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC
T ss_pred CCcCC-ccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccC
Confidence 55554 44433 4455555555555555531 223 33322 22221111
Q ss_pred ---------eecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchhhc
Q 039201 173 ---------TEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTG 241 (258)
Q Consensus 173 ---------L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~ 241 (258)
+++++|++++..|..+..+++|++|++++|.+++. .+..++.+++|++| ++|+++ .+|..+.
T Consensus 189 ~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~------~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 261 (332)
T 2ft3_A 189 KDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI------ENGSLSFLPTLRELHLDNNKLS-RVPAGLP 261 (332)
T ss_dssp SSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC------CTTGGGGCTTCCEEECCSSCCC-BCCTTGG
T ss_pred ccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC------ChhHhhCCCCCCEEECCCCcCe-ecChhhh
Confidence 55555555555555666666677777777766663 23356677777776 778887 7888888
Q ss_pred CCCCCCeEeccCCcCCC
Q 039201 242 ELRNLQAPDLSENNLNA 258 (258)
Q Consensus 242 ~l~~L~~L~Ls~N~l~G 258 (258)
.+++|++|++++|++++
T Consensus 262 ~l~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 262 DLKLLQVVYLHTNNITK 278 (332)
T ss_dssp GCTTCCEEECCSSCCCB
T ss_pred cCccCCEEECCCCCCCc
Confidence 88888888888887763
No 20
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=5.1e-23 Score=185.18 Aligned_cols=190 Identities=18% Similarity=0.173 Sum_probs=116.8
Q ss_pred ccceeeCCC---------CCcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCcc
Q 039201 60 WTGVTCSHR---------HPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRL 129 (258)
Q Consensus 60 w~gv~c~~~---------~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l 129 (258)
|..+.|... .+.++.|++++|++.+..+..+.++++|++|+|++|.+.+..+..+.++++|++|+ ++|.+
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 456777531 13577888888888877777788888888888888888765556777888888888 66667
Q ss_pred CCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecce---------------------eecCCCccccccCcc
Q 039201 130 GGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSE---------------------TEKSKNRFTGKLGID 187 (258)
Q Consensus 130 ~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~---------------------L~l~~n~~~g~ip~~ 187 (258)
++..+..+.++++|++|++++|++++..+ .+.++++|++|++. |++++|+++ .+|.
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~- 202 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN- 202 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-
T ss_pred CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-
Confidence 65444567777777777777777764444 55555666652221 444444444 3332
Q ss_pred ccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201 188 FNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLN 257 (258)
Q Consensus 188 ~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 257 (258)
+..+++|++|++++|.+++.. +..+.++++|+.| ++|++++..|..+..+++|+.|+|++|+++
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 268 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSAIR------PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268 (440)
T ss_dssp CTTCSSCCEEECTTSCCCEEC------TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC
T ss_pred cCCCcccCEEECCCCccCccC------hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC
Confidence 444455555555555555432 3344455555555 555555555555555556666666666554
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=1.1e-24 Score=204.92 Aligned_cols=161 Identities=20% Similarity=0.233 Sum_probs=131.3
Q ss_pred CcccCCccCCCCCCCCEEEccCCCCcCC-----------------CCcccC--CCCCCcEEc-CCCccCCCCCcccCCCC
Q 039201 82 IGGFLSPFVGNPSFVRVIVLANNSYYGE-----------------IPNEVG--CLSRLETLI-GGYRLGGKIPESLGQLG 141 (258)
Q Consensus 82 l~g~lp~~~~~l~~L~~L~Ls~n~l~g~-----------------~p~~l~--~l~~L~~L~-~~n~l~g~ip~~~~~l~ 141 (258)
++| +|+.++++++|++|++++|.++|. +|+.++ ++++|++|+ ++|.+.|.+|+.+++++
T Consensus 195 l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 273 (636)
T 4eco_A 195 ITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273 (636)
T ss_dssp EEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS
T ss_pred Ccc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCC
Confidence 345 888999999999999999999986 999999 999999999 88999999999999999
Q ss_pred CCCEEEccccc-ccc-ccc-cccCC------CCcceecceeecCCCccccccCc--cccCCCCCCeEecCCCcCCccCCC
Q 039201 142 SINYLILAENN-FSG-TLR-SIFNI------SSLEFQSSETEKSKNRFTGKLGI--DFNSLINLARLNLGQKNLGIGTTS 210 (258)
Q Consensus 142 ~L~~L~L~~n~-l~g-~~p-~~~~l------~~L~~l~l~L~l~~n~~~g~ip~--~~~~l~~L~~L~ls~N~l~g~~p~ 210 (258)
+|++|++++|+ ++| .+| .++++ ++|++ +++++|+++ .+|. .++++++|++|++++|.++|.+|
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~----L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip- 347 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI----IYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP- 347 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCE----EECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred CCCEEECcCCCCCccccchHHHHhhhccccCCCCCE----EECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence 99999999998 999 899 88876 99999 999999999 8998 89999999999999999998866
Q ss_pred CchhhhhhcCCCCCccc--cccccccccchhhcCCCC-CCeEeccCCcC
Q 039201 211 DLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRN-LQAPDLSENNL 256 (258)
Q Consensus 211 ~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~-L~~L~Ls~N~l 256 (258)
.++++++|++| ++|+++ .+|..++.+++ |++|++++|++
T Consensus 348 ------~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l 389 (636)
T 4eco_A 348 ------AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKL 389 (636)
T ss_dssp ------CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCC
T ss_pred ------hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcC
Confidence 23333444443 444444 44444444444 55555544444
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=6.4e-24 Score=195.51 Aligned_cols=190 Identities=20% Similarity=0.253 Sum_probs=153.8
Q ss_pred CccccceeeCCC-----------CCcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-
Q 039201 57 LCQWTGVTCSHR-----------HPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI- 124 (258)
Q Consensus 57 ~c~w~gv~c~~~-----------~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~- 124 (258)
.|.|.|+ |+.+ .++++.|++++|.+++..|..+..+++|++|++++|.+++..|..++++++|++|+
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 5888888 7642 23799999999999988888999999999999999999988888899999999999
Q ss_pred CCCccCCCCCcccCCCCCCCEEEcccccccc-ccc-cccCCCCcceecceeecCCCccccccC-ccccCCCCCCeEecCC
Q 039201 125 GGYRLGGKIPESLGQLGSINYLILAENNFSG-TLR-SIFNISSLEFQSSETEKSKNRFTGKLG-IDFNSLINLARLNLGQ 201 (258)
Q Consensus 125 ~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g-~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip-~~~~~l~~L~~L~ls~ 201 (258)
++|.+.+..|..++++++|++|++++|++++ .+| .++++++|++ +++++|++.+.+| ..++.+++|++|++++
T Consensus 82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~----L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~ 157 (549)
T 2z81_A 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT----LRIGNVETFSEIRRIDFAGLTSLNELEIKA 157 (549)
T ss_dssp TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCE----EEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccE----EECCCCccccccCHhhhhcccccCeeeccC
Confidence 8888988777779999999999999999986 456 8999999999 9999999666776 5789999999999999
Q ss_pred CcCCccCCCCchhhhhhcCCCCCccc--cccccccccchhh-cCCCCCCeEeccCCcCCC
Q 039201 202 KNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTT-GELRNLQAPDLSENNLNA 258 (258)
Q Consensus 202 N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l-~~l~~L~~L~Ls~N~l~G 258 (258)
|.+++.+| ..++++++|++| +.|.+. .+|..+ ..+++|++|++++|+++|
T Consensus 158 n~l~~~~~------~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 158 LSLRNYQS------QSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp TTCCEECT------TTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTT
T ss_pred CcccccCh------hhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCcccc
Confidence 99998744 455556555555 555554 344433 446666666666666553
No 23
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.2e-22 Score=171.60 Aligned_cols=174 Identities=21% Similarity=0.232 Sum_probs=139.8
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA 149 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~ 149 (258)
+++.++++++.+.. + +.+..+++|++|++++|.+++ + +.+.++++|++|+ ++|.+++..|..+.++++|++|+++
T Consensus 42 ~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 42 SIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp TCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred ceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 68888888888763 3 347888899999999998875 3 4678888999998 7778887666667888999999999
Q ss_pred ccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc-
Q 039201 150 ENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL- 227 (258)
Q Consensus 150 ~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L- 227 (258)
+|++++..| .+.++++|++ |++++|++++..|..++.+++|++|++++|.+++. .+..++++++|++|
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~----L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~L~ 187 (272)
T 3rfs_A 118 ENQLQSLPDGVFDKLTNLTY----LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL------PEGVFDKLTQLKDLR 187 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCE----EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC------CTTTTTTCTTCCEEE
T ss_pred CCcCCccCHHHhccCCCCCE----EECCCCccCccCHHHhccCccCCEEECCCCCcCcc------CHHHhcCCccCCEEE
Confidence 999886666 6788889999 88889988876666678888999999999988864 23446777788877
Q ss_pred -cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201 228 -QYNQLTGTIPDTTGELRNLQAPDLSENNLNA 258 (258)
Q Consensus 228 -~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G 258 (258)
++|++++..|..+..+++|++|++++|+++|
T Consensus 188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCcCCccCHHHHhCCcCCCEEEccCCCccc
Confidence 8888887777778888999999999988765
No 24
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=3.4e-23 Score=177.41 Aligned_cols=156 Identities=17% Similarity=0.204 Sum_probs=110.0
Q ss_pred cEEEEEcCCCCCcccCC-ccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCC-CCCcccCCCCCCCEEE
Q 039201 71 RVTKLDLRSKSIGGFLS-PFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGG-KIPESLGQLGSINYLI 147 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp-~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g-~ip~~~~~l~~L~~L~ 147 (258)
+++.|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+.++++|++|+ ++|.+.+ .+|..+..+++|++|+
T Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 181 (306)
T 2z66_A 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181 (306)
T ss_dssp TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEE
Confidence 45555555555544333 3566667777777777777666666667777777777 6666665 4667777777888888
Q ss_pred ccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCC-CCCc
Q 039201 148 LAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNC-SKLK 225 (258)
Q Consensus 148 L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l-~~L~ 225 (258)
+++|++++..| .+..+++|++ +++++|++++..+..+..+++|++|++++|.+++.. +..+..+ ++|+
T Consensus 182 Ls~n~l~~~~~~~~~~l~~L~~----L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~~~~~L~ 251 (306)
T 2z66_A 182 LSQCQLEQLSPTAFNSLSSLQV----LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK------KQELQHFPSSLA 251 (306)
T ss_dssp CTTSCCCEECTTTTTTCTTCCE----EECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCS------SSSCCCCCTTCC
T ss_pred CCCCCcCCcCHHHhcCCCCCCE----EECCCCccCccChhhccCcccCCEeECCCCCCcccC------HHHHHhhhccCC
Confidence 88887776666 6777778887 888888887666667778888888888888888764 3456666 3677
Q ss_pred cc--ccccccccc
Q 039201 226 TL--QYNQLTGTI 236 (258)
Q Consensus 226 ~L--~~N~l~g~i 236 (258)
+| ++|.+++..
T Consensus 252 ~L~L~~N~~~~~c 264 (306)
T 2z66_A 252 FLNLTQNDFACTC 264 (306)
T ss_dssp EEECTTCCEECSG
T ss_pred EEEccCCCeeccc
Confidence 77 999998753
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=1.3e-22 Score=189.42 Aligned_cols=180 Identities=18% Similarity=0.139 Sum_probs=87.5
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA 149 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~ 149 (258)
+++.|++++|.+.+..|..++.+++|++|+|++|.+++..|..++++++|++|+ ++|.+++..+..++++++|++|+++
T Consensus 76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls 155 (597)
T 3oja_B 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 155 (597)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee
Confidence 344555555555544444555555555555555555544444445555555555 4444443222223555555555555
Q ss_pred ccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCcc-CCC-----------------
Q 039201 150 ENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIG-TTS----------------- 210 (258)
Q Consensus 150 ~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~-~p~----------------- 210 (258)
+|.+++..| .+.++++|++ |++++|.+++.- ++.+++|+.|++++|.+++. .|.
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~----L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~ 228 (597)
T 3oja_B 156 NNNLERIEDDTFQATTSLQN----LQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG 228 (597)
T ss_dssp SSCCCBCCTTTTTTCTTCCE----EECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEEC
T ss_pred CCcCCCCChhhhhcCCcCcE----EECcCCCCCCcC---hhhhhhhhhhhcccCccccccCCchhheeeccCCccccccc
Confidence 555555444 4555555555 444444443221 11111111111111111110 000
Q ss_pred ----C----------chhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201 211 ----D----------LDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLN 257 (258)
Q Consensus 211 ----~----------~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 257 (258)
. +.-++.++++++|+.| ++|.+++.+|..++.+++|+.|+|++|+++
T Consensus 229 ~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 291 (597)
T 3oja_B 229 PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 291 (597)
T ss_dssp SCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC
T ss_pred ccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC
Confidence 0 0012345566666666 677777777777777777777777777665
No 26
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=1.2e-23 Score=183.99 Aligned_cols=196 Identities=18% Similarity=0.205 Sum_probs=155.9
Q ss_pred CCCCCCCccccceeeCCC-----------CCcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCC
Q 039201 51 WKASLNLCQWTGVTCSHR-----------HPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSR 119 (258)
Q Consensus 51 w~~~~~~c~w~gv~c~~~-----------~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~ 119 (258)
|......|.|.++ |+.. .++++.|++++|++++..+..+..+++|++|++++|.+++..|..++++++
T Consensus 23 ~~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (353)
T 2z80_A 23 SNQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101 (353)
T ss_dssp ----CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCC
Confidence 4444577888877 6532 237999999999998766668999999999999999999877788999999
Q ss_pred CcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc--cccCCCCcceecceeecCCCc-cccccCccccCCCCCC
Q 039201 120 LETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR--SIFNISSLEFQSSETEKSKNR-FTGKLGIDFNSLINLA 195 (258)
Q Consensus 120 L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p--~~~~l~~L~~l~l~L~l~~n~-~~g~ip~~~~~l~~L~ 195 (258)
|++|+ ++|.+++..+..++++++|++|++++|++++..+ .+.++++|++ +++++|+ +.+..|..++.+++|+
T Consensus 102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~----L~l~~n~~~~~~~~~~~~~l~~L~ 177 (353)
T 2z80_A 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI----LRVGNMDTFTKIQRKDFAGLTFLE 177 (353)
T ss_dssp CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCE----EEEEESSSCCEECTTTTTTCCEEE
T ss_pred CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcE----EECCCCccccccCHHHccCCCCCC
Confidence 99999 7788875433448999999999999999984333 4778999999 9999984 6655577889999999
Q ss_pred eEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchh-hcCCCCCCeEeccCCcCCC
Q 039201 196 RLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDT-TGELRNLQAPDLSENNLNA 258 (258)
Q Consensus 196 ~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~-l~~l~~L~~L~Ls~N~l~G 258 (258)
+|++++|.+++. .|..++++++|++| ++|+++ .+|.. +..+++|++|++++|++++
T Consensus 178 ~L~l~~n~l~~~------~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 178 ELEIDASDLQSY------EPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp EEEEEETTCCEE------CTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTT
T ss_pred EEECCCCCcCcc------CHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcccc
Confidence 999999999886 35667778888887 888886 55554 4558899999999998864
No 27
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=9.2e-24 Score=181.90 Aligned_cols=179 Identities=19% Similarity=0.200 Sum_probs=107.7
Q ss_pred cEEEEEcCCCCCcccCCccC--CCCCCCCEEEccCCCCcCCCCcccCCC-----CCCcEEc-CCCccCCCCCcccCCCCC
Q 039201 71 RVTKLDLRSKSIGGFLSPFV--GNPSFVRVIVLANNSYYGEIPNEVGCL-----SRLETLI-GGYRLGGKIPESLGQLGS 142 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~--~~l~~L~~L~Ls~n~l~g~~p~~l~~l-----~~L~~L~-~~n~l~g~ip~~~~~l~~ 142 (258)
+++.|++++|.+++.+|..+ ..+++|++|++++|.+++. |..++++ ++|++|+ ++|.+.+..|..++++++
T Consensus 96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~ 174 (312)
T 1wwl_A 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174 (312)
T ss_dssp CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence 67777777777777777765 7777788888887777765 6666655 7777777 667777666677777777
Q ss_pred CCEEEccccccccc--cc-cc--cCCCCcceecceeecCCCcccc--ccCc-cccCCCCCCeEecCCCcCCccCCCC-ch
Q 039201 143 INYLILAENNFSGT--LR-SI--FNISSLEFQSSETEKSKNRFTG--KLGI-DFNSLINLARLNLGQKNLGIGTTSD-LD 213 (258)
Q Consensus 143 L~~L~L~~n~l~g~--~p-~~--~~l~~L~~l~l~L~l~~n~~~g--~ip~-~~~~l~~L~~L~ls~N~l~g~~p~~-~~ 213 (258)
|++|++++|++.|. +| .+ .++++|++ |++++|++++ .++. .+..+++|++|++++|.+++.+|.. +.
T Consensus 175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~----L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 175 LSTLDLSDNPELGERGLISALCPLKFPTLQV----LALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp CCEEECCSCTTCHHHHHHHHSCTTSCTTCCE----EECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred CCEEECCCCCcCcchHHHHHHHhccCCCCCE----EECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence 77777777777654 23 33 66777777 5556665552 2222 2234555555666555555543210 00
Q ss_pred -----------------hhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201 214 -----------------FITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLNA 258 (258)
Q Consensus 214 -----------------~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G 258 (258)
+|..+. ++|++| ++|++++. |. +..+++|++|++++|+++|
T Consensus 251 ~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 112221 333333 55666533 44 5566666666666666654
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=2.5e-22 Score=182.13 Aligned_cols=187 Identities=20% Similarity=0.124 Sum_probs=152.9
Q ss_pred cccceeeCCC---------CCcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCc
Q 039201 59 QWTGVTCSHR---------HPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYR 128 (258)
Q Consensus 59 ~w~gv~c~~~---------~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~ 128 (258)
.|..+.|... ..+++.|++++|++++..+..+..+++|++|+|++|.+++..|..+.++++|++|+ ++|.
T Consensus 12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 3567888642 23689999999999988888999999999999999999988888999999999999 7777
Q ss_pred cCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCcc
Q 039201 129 LGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIG 207 (258)
Q Consensus 129 l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~ 207 (258)
+.+..+..+.++++|++|++++|++++..| .+.++++|++ |++++|++.+..|..+..+++|++|++++|.+++.
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~----L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS----LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE----EEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCE----EECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence 775444567899999999999999998888 8899999999 99999999988888899999999999999998874
Q ss_pred CCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCc
Q 039201 208 TTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENN 255 (258)
Q Consensus 208 ~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 255 (258)
.+..+.++++|+.| ++|++++..+..+..+++|+.|++++|+
T Consensus 168 ------~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~ 211 (477)
T 2id5_A 168 ------PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211 (477)
T ss_dssp ------CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCT
T ss_pred ------ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCc
Confidence 23456677777766 6777776555566666666666666554
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=2e-22 Score=181.44 Aligned_cols=115 Identities=20% Similarity=0.157 Sum_probs=66.9
Q ss_pred CcccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCc
Q 039201 134 PESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDL 212 (258)
Q Consensus 134 p~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~ 212 (258)
|..++.+++|++|++++|++++..| .+.++++|++ |++++|++++..|..++.+++|++|++++|.+++.
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~----L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~----- 362 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK----LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRAL----- 362 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE----EECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEE-----
T ss_pred hhhcccCCCCCEEECCCCcccccChhHhcCcccCCE----EECCCCccCCcChhHhcCcccCCEEECCCCccccc-----
Confidence 3444455555555555555554444 5555555555 56666666555555556666666666666666553
Q ss_pred hhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201 213 DFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLNA 258 (258)
Q Consensus 213 ~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G 258 (258)
.|..++++++|++| ++|++++..+..+..+++|++|++++|+++|
T Consensus 363 -~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 363 -GDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp -CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred -ChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 23455666666666 6666665444445666777777777776654
No 30
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=1.7e-22 Score=167.37 Aligned_cols=177 Identities=19% Similarity=0.171 Sum_probs=146.9
Q ss_pred CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCC-CcCCCCcccCCCCCCcEEc-CC-CccCCCCCcccCCCCCCCEE
Q 039201 70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNS-YYGEIPNEVGCLSRLETLI-GG-YRLGGKIPESLGQLGSINYL 146 (258)
Q Consensus 70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~-l~g~~p~~l~~l~~L~~L~-~~-n~l~g~ip~~~~~l~~L~~L 146 (258)
..++.|++++|++++..+..+..+++|++|++++|. +++..+..+.++++|++|+ ++ |.+++..+..+.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 379999999999998777789999999999999997 7754445789999999999 55 88886666788999999999
Q ss_pred EccccccccccccccCCCCcc---eecceeecCCC-ccccccCccccCCCCCC-eEecCCCcCCccCCCCchhhhhhcCC
Q 039201 147 ILAENNFSGTLRSIFNISSLE---FQSSETEKSKN-RFTGKLGIDFNSLINLA-RLNLGQKNLGIGTTSDLDFITLLRNC 221 (258)
Q Consensus 147 ~L~~n~l~g~~p~~~~l~~L~---~l~l~L~l~~n-~~~g~ip~~~~~l~~L~-~L~ls~N~l~g~~p~~~~~~~~l~~l 221 (258)
++++|++++ +|.+..+++|+ + +++++| ++++..+..+..+++|+ +|++++|.++ .+| ......
T Consensus 111 ~l~~n~l~~-lp~~~~l~~L~~L~~----L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~------~~~~~~ 178 (239)
T 2xwt_C 111 GIFNTGLKM-FPDLTKVYSTDIFFI----LEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQ------GYAFNG 178 (239)
T ss_dssp EEEEECCCS-CCCCTTCCBCCSEEE----EEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EEC------TTTTTT
T ss_pred eCCCCCCcc-ccccccccccccccE----EECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccC------HhhcCC
Confidence 999999986 77777888887 8 999999 88866666789999999 9999999998 443 322222
Q ss_pred CCCccc--cccc-cccccchhhcCC-CCCCeEeccCCcCCC
Q 039201 222 SKLKTL--QYNQ-LTGTIPDTTGEL-RNLQAPDLSENNLNA 258 (258)
Q Consensus 222 ~~L~~L--~~N~-l~g~ip~~l~~l-~~L~~L~Ls~N~l~G 258 (258)
++|+.| ++|+ +++..+..+..+ ++|+.|++++|++++
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA 219 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC
T ss_pred CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc
Confidence 567766 8895 985556778889 999999999999864
No 31
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=4.9e-22 Score=169.61 Aligned_cols=174 Identities=21% Similarity=0.111 Sum_probs=153.0
Q ss_pred CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEc
Q 039201 70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLIL 148 (258)
Q Consensus 70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L 148 (258)
+.++.|++++|.+++..+..+..+++|++|++++|.+++ +|.. +.+++|++|+ ++|.+. .+|..+..+++|++|++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEEC
Confidence 378999999999998888899999999999999999985 4443 7899999999 777776 78999999999999999
Q ss_pred cccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc
Q 039201 149 AENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL 227 (258)
Q Consensus 149 ~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L 227 (258)
++|++++..| .+..+++|++ |++++|++++..+..+..+++|+.|++++|.+++. | +..+.++++|++|
T Consensus 108 ~~N~l~~l~~~~~~~l~~L~~----L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-~-----~~~~~~l~~L~~L 177 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLGELQE----LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL-P-----AGLLNGLENLDTL 177 (290)
T ss_dssp CSSCCCCCCSSTTTTCTTCCE----EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC-C-----TTTTTTCTTCCEE
T ss_pred CCCcCcccCHHHHcCCCCCCE----EECCCCCCCccChhhcccccCCCEEECCCCcCCcc-C-----HHHhcCcCCCCEE
Confidence 9999997666 7999999999 99999999976666788999999999999999863 2 2345778888888
Q ss_pred --cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201 228 --QYNQLTGTIPDTTGELRNLQAPDLSENNLN 257 (258)
Q Consensus 228 --~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 257 (258)
++|+++ .+|..+...++|+.++|++|++.
T Consensus 178 ~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp ECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 999999 89999999999999999999875
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=1.1e-21 Score=173.70 Aligned_cols=106 Identities=18% Similarity=0.192 Sum_probs=54.3
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcc-cCCCCCCCEEEc
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPES-LGQLGSINYLIL 148 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~-~~~l~~L~~L~L 148 (258)
+++.|+++++.+.+..+..+..+++|++|++++|.+++..|..++++++|++|+ ++|.+. .+|.. +.++++|++|++
T Consensus 70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSM 148 (390)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEEC
Confidence 344555555555544444555555555555555555544444455555555555 444444 33333 355555555555
Q ss_pred cccccccccc-cccCCCCcceecceeecCCCccc
Q 039201 149 AENNFSGTLR-SIFNISSLEFQSSETEKSKNRFT 181 (258)
Q Consensus 149 ~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~ 181 (258)
++|++++..| .+.++++|++ |++++|+++
T Consensus 149 ~~n~l~~~~~~~~~~l~~L~~----L~l~~n~l~ 178 (390)
T 3o6n_A 149 SNNNLERIEDDTFQATTSLQN----LQLSSNRLT 178 (390)
T ss_dssp CSSCCCBCCTTTTSSCTTCCE----EECCSSCCS
T ss_pred CCCccCccChhhccCCCCCCE----EECCCCcCC
Confidence 5555554444 4555555555 444444443
No 33
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=1.5e-22 Score=188.57 Aligned_cols=177 Identities=20% Similarity=0.146 Sum_probs=152.5
Q ss_pred CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEc
Q 039201 70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLIL 148 (258)
Q Consensus 70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L 148 (258)
++++.|++++|.+++..+..+.++++|++|++++|.+++..|..++++++|++|+ ++|.+.+..|..++++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 4799999999999988888999999999999999999987788899999999999 888999888999999999999999
Q ss_pred cccccccccc-cccCCCCcceecceeecCCCcccc-ccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCc-
Q 039201 149 AENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTG-KLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLK- 225 (258)
Q Consensus 149 ~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g-~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~- 225 (258)
++|.+++..| .++++++|++ |++++|++.+ .+|..++++++|++|++++|.+++..|. .++.+++|+
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~----L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~------~~~~l~~L~~ 181 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKK----LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN------DLQFLRENPQ 181 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCE----EECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT------TTHHHHHCTT
T ss_pred cCCccccccccccCCCCCCCE----EeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh------hhhhhhcccc
Confidence 9999997777 8999999999 9999999986 7899999999999999999999986443 344444332
Q ss_pred ---cc--cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201 226 ---TL--QYNQLTGTIPDTTGELRNLQAPDLSENNLN 257 (258)
Q Consensus 226 ---~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 257 (258)
.+ ++|++++ +|+......+|+.|++++|+++
T Consensus 182 ~l~~L~l~~n~l~~-~~~~~~~~~~L~~L~L~~n~~~ 217 (606)
T 3vq2_A 182 VNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNS 217 (606)
T ss_dssp CCCEEECTTCCCCE-ECTTTTTTCEEEEEEEESCCSC
T ss_pred ccceeeccCCCcce-eCcccccCceeeeeeccCCccc
Confidence 34 8899985 4444444458999999999775
No 34
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=2.3e-23 Score=201.20 Aligned_cols=158 Identities=18% Similarity=0.259 Sum_probs=136.8
Q ss_pred CCccCCCCCCCCEEEccCCCCcC-----------------CCCcccC--CCCCCcEEc-CCCccCCCCCcccCCCCCCCE
Q 039201 86 LSPFVGNPSFVRVIVLANNSYYG-----------------EIPNEVG--CLSRLETLI-GGYRLGGKIPESLGQLGSINY 145 (258)
Q Consensus 86 lp~~~~~l~~L~~L~Ls~n~l~g-----------------~~p~~l~--~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~ 145 (258)
+|+.++++++|++|+|++|.++| .+|+.++ ++++|++|+ ++|.+.|.+|..++++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 78889999999999999999998 3999988 999999999 888999999999999999999
Q ss_pred EEccccc-ccc-ccc-cccCCC-------CcceecceeecCCCccccccCc--cccCCCCCCeEecCCCcCCccCCCCch
Q 039201 146 LILAENN-FSG-TLR-SIFNIS-------SLEFQSSETEKSKNRFTGKLGI--DFNSLINLARLNLGQKNLGIGTTSDLD 213 (258)
Q Consensus 146 L~L~~n~-l~g-~~p-~~~~l~-------~L~~l~l~L~l~~n~~~g~ip~--~~~~l~~L~~L~ls~N~l~g~~p~~~~ 213 (258)
|++++|+ ++| .+| .+++++ +|++ |++++|+++ .+|. .++++++|++|++++|.++ .+|
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~----L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp---- 589 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQI----FYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE---- 589 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCE----EECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC----
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccE----EEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch----
Confidence 9999998 998 888 777665 9999 999999999 8998 8999999999999999998 543
Q ss_pred hhhhhcCCCCCccc--cccccccccchhhcCCCC-CCeEeccCCcCC
Q 039201 214 FITLLRNCSKLKTL--QYNQLTGTIPDTTGELRN-LQAPDLSENNLN 257 (258)
Q Consensus 214 ~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~-L~~L~Ls~N~l~ 257 (258)
.++++++|+.| ++|+++ .+|..+..+++ |+.|+|++|+++
T Consensus 590 ---~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 590 ---AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp ---CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC
T ss_pred ---hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC
Confidence 56666666666 777777 77777777777 777777777664
No 35
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=2.8e-22 Score=193.95 Aligned_cols=189 Identities=19% Similarity=0.133 Sum_probs=164.3
Q ss_pred ccccceeeCCCCCcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCC-CcccCCCCCCcEEc-CCCccCCCCCc
Q 039201 58 CQWTGVTCSHRHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEI-PNEVGCLSRLETLI-GGYRLGGKIPE 135 (258)
Q Consensus 58 c~w~gv~c~~~~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~-p~~l~~l~~L~~L~-~~n~l~g~ip~ 135 (258)
|.|..|.+ ..++++.|++++|.+++..|..+.++++|++|++++|.+.+.+ |..+.++++|++|+ ++|.+.+..|.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 46777776 3458999999999999988999999999999999999887787 67899999999999 88999998899
Q ss_pred ccCCCCCCCEEEccccccccccc-c--ccCCCCcceecceeecCCCccccccC-ccccCCCCCCeEecCCCcCCccCCCC
Q 039201 136 SLGQLGSINYLILAENNFSGTLR-S--IFNISSLEFQSSETEKSKNRFTGKLG-IDFNSLINLARLNLGQKNLGIGTTSD 211 (258)
Q Consensus 136 ~~~~l~~L~~L~L~~n~l~g~~p-~--~~~l~~L~~l~l~L~l~~n~~~g~ip-~~~~~l~~L~~L~ls~N~l~g~~p~~ 211 (258)
.++++++|++|+|++|.+++.+| . +.++++|++ |++++|.+++..| ..++++++|++|++++|.+++..|
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~----L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~-- 165 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR----LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE-- 165 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE----EEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS--
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCE----EECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH--
Confidence 99999999999999999998777 4 889999999 9999999987655 579999999999999999998744
Q ss_pred chhhhhhcCC--CCCccc--cccccccccchhhcCCCC------CCeEeccCCcCCC
Q 039201 212 LDFITLLRNC--SKLKTL--QYNQLTGTIPDTTGELRN------LQAPDLSENNLNA 258 (258)
Q Consensus 212 ~~~~~~l~~l--~~L~~L--~~N~l~g~ip~~l~~l~~------L~~L~Ls~N~l~G 258 (258)
..++.+ ++|+.| +.|.+++.+|..++.+++ |+.|++++|++++
T Consensus 166 ----~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 218 (844)
T 3j0a_A 166 ----HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV 218 (844)
T ss_dssp ----GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSST
T ss_pred ----HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCch
Confidence 444444 566666 899999999988877766 9999999997764
No 36
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=4.2e-22 Score=185.54 Aligned_cols=174 Identities=20% Similarity=0.143 Sum_probs=104.5
Q ss_pred EEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCC-cccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201 72 VTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIP-NEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA 149 (258)
Q Consensus 72 v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p-~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~ 149 (258)
++.+++++|.+.+ +|..+..+++|++|++++|.+.+..| ..+.++++|++|+ ++|.+.+.+|..+.++++|++|+++
T Consensus 378 L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 456 (606)
T 3vq2_A 378 LRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMA 456 (606)
T ss_dssp CCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred ccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECC
Confidence 4444444444432 33455555666666666666555544 4455666666666 5556666566666666666666666
Q ss_pred ccccccc-cc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc
Q 039201 150 ENNFSGT-LR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL 227 (258)
Q Consensus 150 ~n~l~g~-~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L 227 (258)
+|++++. +| .+..+++|++ |++++|++++..|..++.+++|++|++++|.+++. .|..++++++|+.|
T Consensus 457 ~n~l~~~~~~~~~~~l~~L~~----L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------~~~~~~~l~~L~~L 526 (606)
T 3vq2_A 457 GNSFKDNTLSNVFANTTNLTF----LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL------DSSHYNQLYSLSTL 526 (606)
T ss_dssp TCEEGGGEECSCCTTCTTCCE----EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCE------EGGGTTTCTTCCEE
T ss_pred CCcCCCcchHHhhccCCCCCE----EECCCCcCCccChhhhcccccCCEEECCCCcCCCc------CHHHccCCCcCCEE
Confidence 6666653 45 5666666666 66666666666666666666666666666666654 34556666666666
Q ss_pred --cccccccccchhhcCCC-CCCeEeccCCcCC
Q 039201 228 --QYNQLTGTIPDTTGELR-NLQAPDLSENNLN 257 (258)
Q Consensus 228 --~~N~l~g~ip~~l~~l~-~L~~L~Ls~N~l~ 257 (258)
++|+++ .+|..+..++ +|++|++++|+++
T Consensus 527 ~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 527 DCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp ECTTSCCC-CEESCGGGSCTTCCEEECCSCCCC
T ss_pred ECCCCcCc-ccCHhHhhhcccCcEEEccCCCcc
Confidence 666666 5666666665 4677777766664
No 37
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.87 E-value=8.3e-22 Score=177.88 Aligned_cols=177 Identities=20% Similarity=0.148 Sum_probs=137.9
Q ss_pred CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCc-------------
Q 039201 70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPE------------- 135 (258)
Q Consensus 70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~------------- 135 (258)
++++.|++++|.+.+..+..+..+++|++|+|++|.+++..+..+.++++|++|+ ++|.+.+..+.
T Consensus 99 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 178 (452)
T 3zyi_A 99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL 178 (452)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeC
Confidence 4688888888888877777788888888888888888754445577777888877 55555432222
Q ss_pred ------------ccCCCCCCCEEEccccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCc
Q 039201 136 ------------SLGQLGSINYLILAENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKN 203 (258)
Q Consensus 136 ------------~~~~l~~L~~L~L~~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~ 203 (258)
.+.++++|++|++++|+++ .+|.+..+++|++ |++++|++++..|..+..+++|+.|++++|.
T Consensus 179 ~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~----L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 253 (452)
T 3zyi_A 179 GELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVGLEE----LEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253 (452)
T ss_dssp CCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCCCCTTCTTCCE----EECTTSCCSEECGGGGTTCTTCCEEECTTSC
T ss_pred CCCCCccccChhhccCCCCCCEEECCCCccc-ccccccccccccE----EECcCCcCcccCcccccCccCCCEEEeCCCc
Confidence 3455666666666666666 3456666777777 9999999999889999999999999999999
Q ss_pred CCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201 204 LGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLN 257 (258)
Q Consensus 204 l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 257 (258)
+++. .+..+.++++|+.| ++|++++..+..+..+++|+.|+|++|.+.
T Consensus 254 l~~~------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 254 VSLI------ERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CCEE------CTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CceE------CHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 9986 34567888888888 999999766677889999999999999864
No 38
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=2.5e-21 Score=163.23 Aligned_cols=190 Identities=20% Similarity=0.221 Sum_probs=161.2
Q ss_pred CCCccccceeeCCCCCcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCC
Q 039201 55 LNLCQWTGVTCSHRHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKI 133 (258)
Q Consensus 55 ~~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~i 133 (258)
.++|.|.|+.|.... .++.+++++++++ .+|..+. +.+++|++++|.+++..+..+.++++|++|+ ++|.++...
T Consensus 2 ~~~C~~~~~~C~c~~-~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCNN-NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEET-TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeCC-CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 479999999997643 6788999999998 4776554 6899999999999966666899999999999 777887544
Q ss_pred CcccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCc
Q 039201 134 PESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDL 212 (258)
Q Consensus 134 p~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~ 212 (258)
+..+.++++|++|++++|++++..+ .+..+++|++ |++++|++++..|..++.+++|++|++++|.+++.
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~----L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~----- 148 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAE----LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL----- 148 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCE----EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-----
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCE----EECCCCccCeeCHHHhCcCcCCCEEECCCCcCCcc-----
Confidence 4456899999999999999996555 6789999999 99999999988788889999999999999999874
Q ss_pred hhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201 213 DFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLNA 258 (258)
Q Consensus 213 ~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G 258 (258)
.+..++.+++|++| ++|++++..+..+..+++|++|++++|++++
T Consensus 149 -~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 149 -PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp -CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred -CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence 22347788888888 8999997666678999999999999999874
No 39
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=3.9e-22 Score=168.46 Aligned_cols=152 Identities=18% Similarity=0.198 Sum_probs=111.1
Q ss_pred CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEc
Q 039201 70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLIL 148 (258)
Q Consensus 70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L 148 (258)
++++.|++++|.+.+ + +.+..+++|++|++++|.+++..|..++++++|++|+ ++|.+++..|..++++++|++|++
T Consensus 63 ~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 140 (272)
T 3rfs_A 63 PNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140 (272)
T ss_dssp TTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence 378888888888775 2 4677888888888888888765566677888888888 777777666666778888888888
Q ss_pred cccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc
Q 039201 149 AENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL 227 (258)
Q Consensus 149 ~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L 227 (258)
++|++++..| .+..+++|++ |++++|++++..+..++.+++|++|++++|.+++.. +..++++++|++|
T Consensus 141 ~~n~l~~~~~~~~~~l~~L~~----L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L 210 (272)
T 3rfs_A 141 AHNQLQSLPKGVFDKLTNLTE----LDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP------DGVFDRLTSLQYI 210 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCE----EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC------TTTTTTCTTCCEE
T ss_pred CCCccCccCHHHhccCccCCE----EECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC------HHHHhCCcCCCEE
Confidence 8888875555 5677888888 888888888666666778888888888888887742 2335555555555
Q ss_pred --cccccc
Q 039201 228 --QYNQLT 233 (258)
Q Consensus 228 --~~N~l~ 233 (258)
++|.+.
T Consensus 211 ~l~~N~~~ 218 (272)
T 3rfs_A 211 WLHDNPWD 218 (272)
T ss_dssp ECCSSCBC
T ss_pred EccCCCcc
Confidence 455444
No 40
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=1.2e-21 Score=163.47 Aligned_cols=167 Identities=19% Similarity=0.176 Sum_probs=143.2
Q ss_pred cccceeeCCC---------CCcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCc
Q 039201 59 QWTGVTCSHR---------HPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYR 128 (258)
Q Consensus 59 ~w~gv~c~~~---------~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~ 128 (258)
.+..+.|... .+.++.|++++|++.+..+..+..+++|++|++++|.+++..|..+.++++|++|+ ++|.
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc
Confidence 3556666531 23689999999999988888899999999999999999987778889999999999 8888
Q ss_pred cCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCcc
Q 039201 129 LGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIG 207 (258)
Q Consensus 129 l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~ 207 (258)
+++..|..+..+++|++|++++|++++..+ .+..+++|++ |++++|++++..+..++.+++|++|++++|.+++.
T Consensus 95 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~----L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE----LRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE----EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccE----EECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 887666778999999999999999996555 6789999999 99999999976666799999999999999999975
Q ss_pred CCCCchhhhhhcCCCCCccc--cccccccc
Q 039201 208 TTSDLDFITLLRNCSKLKTL--QYNQLTGT 235 (258)
Q Consensus 208 ~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ 235 (258)
. +..+.++++|++| ++|++++.
T Consensus 171 ~------~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 P------HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp C------TTTTTTCTTCCEEECCSCCBCTT
T ss_pred C------HHHHhCCCCCCEEEeeCCceeCC
Confidence 2 3467778888887 89999876
No 41
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=6.2e-22 Score=184.42 Aligned_cols=176 Identities=18% Similarity=0.147 Sum_probs=98.7
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcc-cCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEc
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNE-VGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLIL 148 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~-l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L 148 (258)
+++.+++++|.+.+..|..+..+++|++|++++|.+.+..|.. +.++++|++|+ ++|.+.+..|..++++++|++|++
T Consensus 377 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 456 (606)
T 3t6q_A 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL 456 (606)
T ss_dssp TCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEEC
Confidence 4455555555554444445555555555555555555444332 45555555555 455555555555555566666666
Q ss_pred cccccccc-c--c-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCC
Q 039201 149 AENNFSGT-L--R-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKL 224 (258)
Q Consensus 149 ~~n~l~g~-~--p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L 224 (258)
++|++++. + + .+..+++|++ +++++|++++..|..++.+++|++|++++|.+++. .|..+.+++.|
T Consensus 457 ~~n~l~~~~~~~~~~~~~l~~L~~----L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------~~~~l~~l~~L 526 (606)
T 3t6q_A 457 QGNHFPKGNIQKTNSLQTLGRLEI----LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS------SIEALSHLKGI 526 (606)
T ss_dssp TTCBCGGGEECSSCGGGGCTTCCE----EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGG------GGGGGTTCCSC
T ss_pred CCCCCCccccccchhhccCCCccE----EECCCCccCccChhhhccccCCCEEECCCCccCcC------ChhHhCccccc
Confidence 66655541 1 1 3455555665 66666666655556666666666666666666654 34455555555
Q ss_pred ccc--cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201 225 KTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLN 257 (258)
Q Consensus 225 ~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 257 (258)
+| ++|++++..|..+..+++|+++++++|+++
T Consensus 527 -~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 527 -YLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp -EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred -EEECcCCcccccCHhhcccCCCCCEEeCCCCCcc
Confidence 55 666666555555666666666666666654
No 42
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=176.45 Aligned_cols=176 Identities=20% Similarity=0.185 Sum_probs=131.6
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCC------------------
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGG------------------ 131 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g------------------ 131 (258)
+++.|++++|.+.+..+..+..+++|++|+|++|.+++..+..+.++++|++|+ ++|.+.+
T Consensus 89 ~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~ 168 (440)
T 3zyj_A 89 HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG 168 (440)
T ss_dssp SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCC
Confidence 677777777777665556677777777777777776643334566666666666 4444432
Q ss_pred ------CCCc-ccCCCCCCCEEEccccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcC
Q 039201 132 ------KIPE-SLGQLGSINYLILAENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNL 204 (258)
Q Consensus 132 ------~ip~-~~~~l~~L~~L~L~~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l 204 (258)
.+|+ .+.++++|++|++++|+++ .+|.+..+++|++ |++++|++++..|..+..+++|+.|++++|.+
T Consensus 169 ~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~----L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l 243 (440)
T 3zyj_A 169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDE----LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243 (440)
T ss_dssp CCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCCCTTCSSCCE----EECTTSCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CCCCcceeCcchhhcccccCeecCCCCcCc-cccccCCCcccCE----EECCCCccCccChhhhccCccCCEEECCCCce
Confidence 2222 3556666677777777666 5566667777777 99999999998899999999999999999999
Q ss_pred CccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201 205 GIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLN 257 (258)
Q Consensus 205 ~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 257 (258)
++. .+..+.++++|+.| ++|++++..+..+..+++|+.|+|++|.+.
T Consensus 244 ~~~------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 244 QVI------ERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CEE------CTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred eEE------ChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 986 34567888888888 999999766777899999999999999864
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=1.1e-21 Score=183.00 Aligned_cols=176 Identities=19% Similarity=0.170 Sum_probs=129.4
Q ss_pred CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEc
Q 039201 70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLIL 148 (258)
Q Consensus 70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L 148 (258)
++++.|++++|.+.+..|..++.+++|++|++++|.+++..+..++++++|++|+ ++|.+.+..|..++++++|++|++
T Consensus 99 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 178 (597)
T 3oja_B 99 HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 178 (597)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEEC
Confidence 4789999999999987777889999999999999999844344468999999999 888888888888999999999999
Q ss_pred cccccccccc-c-----------------------------------------------------------ccCCCCcce
Q 039201 149 AENNFSGTLR-S-----------------------------------------------------------IFNISSLEF 168 (258)
Q Consensus 149 ~~n~l~g~~p-~-----------------------------------------------------------~~~l~~L~~ 168 (258)
++|.+++.-+ . +..+++|++
T Consensus 179 ~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~ 258 (597)
T 3oja_B 179 SSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVE 258 (597)
T ss_dssp TTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSE
T ss_pred cCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCE
Confidence 9998875321 1 233444555
Q ss_pred ecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCCC
Q 039201 169 QSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNL 246 (258)
Q Consensus 169 l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L 246 (258)
|++++|.+++..|..++.+++|++|++++|.+++ +|..+..+++|+.| ++|+++ .+|..++.+++|
T Consensus 259 ----L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-------l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L 326 (597)
T 3oja_B 259 ----VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-------LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL 326 (597)
T ss_dssp ----EECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-------EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTC
T ss_pred ----EECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-------CCcccccCCCCcEEECCCCCCC-ccCcccccCCCC
Confidence 6666666666666666677777777777776665 33444555666666 667776 566666666777
Q ss_pred CeEeccCCcCC
Q 039201 247 QAPDLSENNLN 257 (258)
Q Consensus 247 ~~L~Ls~N~l~ 257 (258)
++|+|++|+++
T Consensus 327 ~~L~L~~N~l~ 337 (597)
T 3oja_B 327 ENLYLDHNSIV 337 (597)
T ss_dssp SEEECCSSCCC
T ss_pred CEEECCCCCCC
Confidence 77777777665
No 44
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=2.9e-22 Score=172.28 Aligned_cols=173 Identities=19% Similarity=0.194 Sum_probs=118.3
Q ss_pred cEEEEEcCCCCCcccCCccC--CCCCCCCEEEccCCCCcCCCC----cccCCCCCCcEEc-CCCccCCCCCcccCCCCCC
Q 039201 71 RVTKLDLRSKSIGGFLSPFV--GNPSFVRVIVLANNSYYGEIP----NEVGCLSRLETLI-GGYRLGGKIPESLGQLGSI 143 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~--~~l~~L~~L~Ls~n~l~g~~p----~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L 143 (258)
+++.+++++|.+.+..|..+ ..+++|++|++++|.+++..| ..+..+++|++|+ ++|.+.+..|..++++++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 58999999999999888887 899999999999999987666 3345788999999 8888888777888999999
Q ss_pred CEEEccccccccc--cc---cccCCCCcceecceeecCCCccccccCc----cccCCCCCCeEecCCCcCCccCCCCchh
Q 039201 144 NYLILAENNFSGT--LR---SIFNISSLEFQSSETEKSKNRFTGKLGI----DFNSLINLARLNLGQKNLGIGTTSDLDF 214 (258)
Q Consensus 144 ~~L~L~~n~l~g~--~p---~~~~l~~L~~l~l~L~l~~n~~~g~ip~----~~~~l~~L~~L~ls~N~l~g~~p~~~~~ 214 (258)
++|++++|++.+. ++ .+..+++|++ |++++|+++ .+|. .++.+++|++|++++|.+++.+|..
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~----L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~--- 243 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQN----LALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS--- 243 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCS----CBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC---
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCE----EECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhh---
Confidence 9999999988753 32 3467888888 666666664 2222 1345566666666666666643322
Q ss_pred hhhhcCC---CCCccc--cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201 215 ITLLRNC---SKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLN 257 (258)
Q Consensus 215 ~~~l~~l---~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 257 (258)
+..+ ++|++| ++|+++ .+|..+. ++|++|+|++|+++
T Consensus 244 ---~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 244 ---APRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLN 285 (310)
T ss_dssp ---CSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCC
T ss_pred ---HHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCC
Confidence 2222 234443 555555 4454442 45555555555544
No 45
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=5.7e-22 Score=181.55 Aligned_cols=154 Identities=25% Similarity=0.203 Sum_probs=127.9
Q ss_pred CCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCC--CCCcccCCCCCCCEEEccccccccccc--cccCCCC
Q 039201 91 GNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGG--KIPESLGQLGSINYLILAENNFSGTLR--SIFNISS 165 (258)
Q Consensus 91 ~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g--~ip~~~~~l~~L~~L~L~~n~l~g~~p--~~~~l~~ 165 (258)
..+++|++|++++|.+++.+|..++++++|++|+ ++|.+.+ .+|..++++++|++|++++|++++.+| .+..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 6778888888888888888888888888888888 7777776 566778888888888888888887677 4777888
Q ss_pred cceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchh-hcC
Q 039201 166 LEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDT-TGE 242 (258)
Q Consensus 166 L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~-l~~ 242 (258)
|++ +++++|++++.+|..+. ++|++|++++|.++. +|..+.++++|++| ++|+++ .+|.. +..
T Consensus 401 L~~----L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~-------ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~ 466 (520)
T 2z7x_B 401 LLS----LNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKS-------IPKQVVKLEALQELNVASNQLK-SVPDGIFDR 466 (520)
T ss_dssp CCE----EECCSSCCCGGGGGSCC--TTCCEEECCSSCCCC-------CCGGGGGCTTCCEEECCSSCCC-CCCTTTTTT
T ss_pred CCE----EECcCCCCCcchhhhhc--ccCCEEECCCCcccc-------cchhhhcCCCCCEEECCCCcCC-ccCHHHhcc
Confidence 888 88888888888877654 688899999988883 56677788888888 899999 68876 889
Q ss_pred CCCCCeEeccCCcCCC
Q 039201 243 LRNLQAPDLSENNLNA 258 (258)
Q Consensus 243 l~~L~~L~Ls~N~l~G 258 (258)
+++|++|++++|++++
T Consensus 467 l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 467 LTSLQKIWLHTNPWDC 482 (520)
T ss_dssp CTTCCEEECCSSCBCC
T ss_pred CCcccEEECcCCCCcc
Confidence 9999999999999875
No 46
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=2e-21 Score=181.01 Aligned_cols=181 Identities=19% Similarity=0.173 Sum_probs=104.7
Q ss_pred CcEEEEEcCCCCCcccCCc-cCCCCCCCCEEEccCCCCcCCC--CcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCE
Q 039201 70 PRVTKLDLRSKSIGGFLSP-FVGNPSFVRVIVLANNSYYGEI--PNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINY 145 (258)
Q Consensus 70 ~~v~~l~l~~~~l~g~lp~-~~~~l~~L~~L~Ls~n~l~g~~--p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~ 145 (258)
++++.+++++|.+.+.+|. .+..+++|++|++++|.+.+.. |..+.++++|++|+ ++|.+.+..|..+.++++|++
T Consensus 325 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 404 (606)
T 3t6q_A 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404 (606)
T ss_dssp TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSE
T ss_pred CcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCe
Confidence 3567777777777666654 3667777777777777766543 55566667777776 556666656666666666666
Q ss_pred EEccccccccccc--cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCC
Q 039201 146 LILAENNFSGTLR--SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSK 223 (258)
Q Consensus 146 L~L~~n~l~g~~p--~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~ 223 (258)
|++++|++++..| .+.++++|++ +++++|.+++..|..++.+++|++|++++|.+++..+. .+..++.+++
T Consensus 405 L~l~~n~l~~~~~~~~~~~l~~L~~----L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~l~~ 477 (606)
T 3t6q_A 405 LDLAFTRLKVKDAQSPFQNLHLLKV----LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ---KTNSLQTLGR 477 (606)
T ss_dssp EECTTCCEECCTTCCTTTTCTTCCE----EECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEEC---SSCGGGGCTT
T ss_pred EECCCCcCCCcccchhhhCcccCCE----EECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccc---cchhhccCCC
Confidence 6666666665554 3556666666 66666666655566566666666666666666542100 1123344444
Q ss_pred Cccc--cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201 224 LKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLN 257 (258)
Q Consensus 224 L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 257 (258)
|++| ++|++++..|..++.+++|++|++++|+++
T Consensus 478 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 513 (606)
T 3t6q_A 478 LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ccEEECCCCccCccChhhhccccCCCEEECCCCccC
Confidence 4444 444444444444444444444444444443
No 47
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=1.1e-21 Score=181.64 Aligned_cols=154 Identities=21% Similarity=0.218 Sum_probs=131.8
Q ss_pred CCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCC--CCCcccCCCCCCCEEEccccccccccc--cccCCCC
Q 039201 91 GNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGG--KIPESLGQLGSINYLILAENNFSGTLR--SIFNISS 165 (258)
Q Consensus 91 ~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g--~ip~~~~~l~~L~~L~L~~n~l~g~~p--~~~~l~~ 165 (258)
..+++|++|++++|.+++.+|..++++++|++|+ ++|.+++ .+|..+.++++|++|++++|++++.+| .+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 6788899999999999988888899999999999 7777775 345678899999999999999998677 4778899
Q ss_pred cceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchh-hcC
Q 039201 166 LEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDT-TGE 242 (258)
Q Consensus 166 L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~-l~~ 242 (258)
|++ +++++|++++.+|..+. ++|++|++++|.++. +|..+.++++|++| ++|+++ .+|.. +..
T Consensus 430 L~~----L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~-------ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~ 495 (562)
T 3a79_B 430 ILV----LNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-------IPKDVTHLQALQELNVASNQLK-SVPDGVFDR 495 (562)
T ss_dssp CCE----EECCSSCCCGGGGSSCC--TTCSEEECCSSCCCC-------CCTTTTSSCCCSEEECCSSCCC-CCCTTSTTT
T ss_pred CCE----EECCCCCCCcchhhhhc--CcCCEEECCCCcCcc-------cChhhcCCCCCCEEECCCCCCC-CCCHHHHhc
Confidence 999 89999999888887654 789999999999984 55667788888888 999999 78877 899
Q ss_pred CCCCCeEeccCCcCCC
Q 039201 243 LRNLQAPDLSENNLNA 258 (258)
Q Consensus 243 l~~L~~L~Ls~N~l~G 258 (258)
+++|+.|++++|++++
T Consensus 496 l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 496 LTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CTTCCCEECCSCCBCC
T ss_pred CCCCCEEEecCCCcCC
Confidence 9999999999999875
No 48
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=2.9e-21 Score=170.88 Aligned_cols=175 Identities=19% Similarity=0.205 Sum_probs=117.3
Q ss_pred CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcc-cCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEE
Q 039201 70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNE-VGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLI 147 (258)
Q Consensus 70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~-l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~ 147 (258)
++++.|++++|.+.+..|..++.+++|++|++++|.++ .+|.. +.++++|++|+ ++|.+.+..|..+.++++|++|+
T Consensus 93 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 171 (390)
T 3o6n_A 93 HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 171 (390)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEE
T ss_pred CCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEE
Confidence 37888888888888777777888888888888888887 55654 57888888888 77777776677788888888888
Q ss_pred ccccccccccc-c-----------------------------------------------------------ccCCCCcc
Q 039201 148 LAENNFSGTLR-S-----------------------------------------------------------IFNISSLE 167 (258)
Q Consensus 148 L~~n~l~g~~p-~-----------------------------------------------------------~~~l~~L~ 167 (258)
+++|++++.-. . +.++++|+
T Consensus 172 l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~ 251 (390)
T 3o6n_A 172 LSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLV 251 (390)
T ss_dssp CCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred CCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCcc
Confidence 88887764211 1 22334444
Q ss_pred eecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCC
Q 039201 168 FQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRN 245 (258)
Q Consensus 168 ~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~ 245 (258)
+ +++++|++++..|..+..+++|++|++++|.+++ ++..+..+++|++| ++|+++ .+|..+..+++
T Consensus 252 ~----L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-------~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~ 319 (390)
T 3o6n_A 252 E----VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-------LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR 319 (390)
T ss_dssp E----EECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-------EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTT
T ss_pred E----EECCCCcCCCcChhHccccccCCEEECCCCcCcc-------cCcccCCCCCCCEEECCCCcce-ecCccccccCc
Confidence 4 5666666665556666666666666666666654 23334445555555 566665 45555555666
Q ss_pred CCeEeccCCcCC
Q 039201 246 LQAPDLSENNLN 257 (258)
Q Consensus 246 L~~L~Ls~N~l~ 257 (258)
|++|++++|+++
T Consensus 320 L~~L~L~~N~i~ 331 (390)
T 3o6n_A 320 LENLYLDHNSIV 331 (390)
T ss_dssp CSEEECCSSCCC
T ss_pred CCEEECCCCccc
Confidence 666666666554
No 49
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=6.5e-22 Score=181.17 Aligned_cols=82 Identities=13% Similarity=0.142 Sum_probs=60.8
Q ss_pred CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCC-CCCcccCCCCCCCEEE
Q 039201 70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGG-KIPESLGQLGSINYLI 147 (258)
Q Consensus 70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g-~ip~~~~~l~~L~~L~ 147 (258)
++++.|++++|.+++..|..++.+++|++|++++|.++ .+|.. .+++|++|+ ++|.+++ .+|..++++++|++|+
T Consensus 45 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~ 121 (520)
T 2z7x_B 45 SKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLG 121 (520)
T ss_dssp TTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEE
T ss_pred ccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEE
Confidence 36777777777777766777777777777777777776 56665 677777777 6677766 5677777788887777
Q ss_pred ccccccc
Q 039201 148 LAENNFS 154 (258)
Q Consensus 148 L~~n~l~ 154 (258)
+++|.++
T Consensus 122 L~~n~l~ 128 (520)
T 2z7x_B 122 LSTTHLE 128 (520)
T ss_dssp EEESSCC
T ss_pred ecCcccc
Confidence 7777765
No 50
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.86 E-value=1.6e-21 Score=180.56 Aligned_cols=95 Identities=26% Similarity=0.222 Sum_probs=46.7
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA 149 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~ 149 (258)
+++.|++++|.+.+..|..+..+++|++|++++|.+++..|..++++++|++|+ ++|.++ .+|.. .+++|++|+++
T Consensus 53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls 129 (562)
T 3a79_B 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLS 129 (562)
T ss_dssp TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECC
T ss_pred CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECC
Confidence 455555555555544444555555555555555555544444455555555555 444443 34433 44444444444
Q ss_pred cccccc-ccc-cccCCCCcce
Q 039201 150 ENNFSG-TLR-SIFNISSLEF 168 (258)
Q Consensus 150 ~n~l~g-~~p-~~~~l~~L~~ 168 (258)
+|++++ .+| .++++++|++
T Consensus 130 ~N~l~~l~~p~~~~~l~~L~~ 150 (562)
T 3a79_B 130 FNDFDVLPVCKEFGNLTKLTF 150 (562)
T ss_dssp SSCCSBCCCCGGGGGCTTCCE
T ss_pred CCCccccCchHhhcccCcccE
Confidence 444443 233 4444444444
No 51
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.86 E-value=8.8e-23 Score=175.75 Aligned_cols=177 Identities=17% Similarity=0.139 Sum_probs=142.1
Q ss_pred EEEEEcCCCCC-cccCCccCC-------CCCCCCEEEccCCCCcCCCCccc--CCCCCCcEEc-CCCccCCCCCcccCCC
Q 039201 72 VTKLDLRSKSI-GGFLSPFVG-------NPSFVRVIVLANNSYYGEIPNEV--GCLSRLETLI-GGYRLGGKIPESLGQL 140 (258)
Q Consensus 72 v~~l~l~~~~l-~g~lp~~~~-------~l~~L~~L~Ls~n~l~g~~p~~l--~~l~~L~~L~-~~n~l~g~ip~~~~~l 140 (258)
++.+++++|.+ .+.+|..+. ++++|++|++++|.++|.+|..+ +.+++|++|+ ++|.+++. |..++.+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence 44455666655 344555554 78999999999999999999887 8999999999 88888877 8877777
Q ss_pred -----CCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccc--cCccc--cCCCCCCeEecCCCcCCccCCC
Q 039201 141 -----GSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGK--LGIDF--NSLINLARLNLGQKNLGIGTTS 210 (258)
Q Consensus 141 -----~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~--ip~~~--~~l~~L~~L~ls~N~l~g~~p~ 210 (258)
++|++|++++|++++..| .++++++|++ +++++|++.|. +|..+ +.+++|++|++++|.+++..
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~----L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-- 217 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALST----LDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS-- 217 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCE----EECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH--
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCE----EECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH--
Confidence 999999999999998887 8999999999 99999998876 34455 88999999999999998420
Q ss_pred Cchhh-hhhcCCCCCccc--cccccccccc-hhhcCCCCCCeEeccCCcCC
Q 039201 211 DLDFI-TLLRNCSKLKTL--QYNQLTGTIP-DTTGELRNLQAPDLSENNLN 257 (258)
Q Consensus 211 ~~~~~-~~l~~l~~L~~L--~~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~ 257 (258)
..+ ..+.++++|++| ++|++++.+| ..+..+++|++|++++|+++
T Consensus 218 --~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 218 --GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp --HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred --HHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence 022 234567778877 8899988775 45566788899999888875
No 52
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=9e-22 Score=179.55 Aligned_cols=180 Identities=17% Similarity=0.114 Sum_probs=94.3
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCc--------------
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPE-------------- 135 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~-------------- 135 (258)
+++.|++++|.+++..|..+..+++|++|+|++|.+++..| ++.+++|++|+ ++|.+++..+.
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~ 112 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS 112 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCC
Confidence 56666666666666555566666666666666666665433 55556665555 33322211000
Q ss_pred --ccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCcccc-CCCCCCeEecCCCcCCccCCCC
Q 039201 136 --SLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFN-SLINLARLNLGQKNLGIGTTSD 211 (258)
Q Consensus 136 --~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~-~l~~L~~L~ls~N~l~g~~p~~ 211 (258)
....+++|++|++++|.+++..| .++.+++|++ |++++|.+++..|..+. .+++|++|++++|.+++..+..
T Consensus 113 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~----L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~ 188 (487)
T 3oja_A 113 RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQY----LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV 188 (487)
T ss_dssp CEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEE----EECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC
T ss_pred CCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCE----EECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccc
Confidence 00123445555555555554444 4555555555 55555555554444443 3444444444444444321000
Q ss_pred c---------------hhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201 212 L---------------DFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLN 257 (258)
Q Consensus 212 ~---------------~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 257 (258)
. .+|+.+..+++|+.| ++|++++ +|..++.+++|+.|++++|+++
T Consensus 189 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 189 VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred cCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 0 034445666666666 6677763 6666666777777777777654
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=1.2e-21 Score=171.29 Aligned_cols=182 Identities=23% Similarity=0.224 Sum_probs=137.5
Q ss_pred CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcc-cCCCCCCcEEc-CCCccCCCCCc--ccCCCCCCCE
Q 039201 70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNE-VGCLSRLETLI-GGYRLGGKIPE--SLGQLGSINY 145 (258)
Q Consensus 70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~-l~~l~~L~~L~-~~n~l~g~ip~--~~~~l~~L~~ 145 (258)
++++.|++++|.+++..|..+..+++|++|++++|.+++ +|.. ++++++|++|+ ++|.+. .+|. .+.++++|++
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~ 153 (353)
T 2z80_A 76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQI 153 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCE
T ss_pred CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcE
Confidence 478999999999988777889999999999999999984 5544 78899999998 667776 4555 6788899999
Q ss_pred EEccccc-cccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCc--------------------
Q 039201 146 LILAENN-FSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKN-------------------- 203 (258)
Q Consensus 146 L~L~~n~-l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~-------------------- 203 (258)
|++++|+ +++..| .+.++++|++ +++++|++++..|..++.+++|++|++++|.
T Consensus 154 L~l~~n~~~~~~~~~~~~~l~~L~~----L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L 229 (353)
T 2z80_A 154 LRVGNMDTFTKIQRKDFAGLTFLEE----LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLEL 229 (353)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEE----EEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEE
T ss_pred EECCCCccccccCHHHccCCCCCCE----EECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEEC
Confidence 9998884 554445 7888888888 7788888877777777666655555555554
Q ss_pred ----CCccCCCCc-------------------------hhhhhhcCCCCCccc--cccccccccchhh-cCCCCCCeEec
Q 039201 204 ----LGIGTTSDL-------------------------DFITLLRNCSKLKTL--QYNQLTGTIPDTT-GELRNLQAPDL 251 (258)
Q Consensus 204 ----l~g~~p~~~-------------------------~~~~~l~~l~~L~~L--~~N~l~g~ip~~l-~~l~~L~~L~L 251 (258)
+++..+..+ .+|..++++++|++| ++|+++ .+|..+ ..+++|++|++
T Consensus 230 ~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L 308 (353)
T 2z80_A 230 RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWL 308 (353)
T ss_dssp ESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEe
Confidence 443222111 145567788888888 889998 777774 88999999999
Q ss_pred cCCcCCC
Q 039201 252 SENNLNA 258 (258)
Q Consensus 252 s~N~l~G 258 (258)
++|+++|
T Consensus 309 ~~N~~~~ 315 (353)
T 2z80_A 309 HTNPWDC 315 (353)
T ss_dssp CSSCBCC
T ss_pred eCCCccC
Confidence 9998875
No 54
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=1.4e-21 Score=180.46 Aligned_cols=178 Identities=24% Similarity=0.159 Sum_probs=155.6
Q ss_pred CcEEEEEcCCCCCcccC--CccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCC-cccCCCCCCCE
Q 039201 70 PRVTKLDLRSKSIGGFL--SPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIP-ESLGQLGSINY 145 (258)
Q Consensus 70 ~~v~~l~l~~~~l~g~l--p~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip-~~~~~l~~L~~ 145 (258)
++++.+++++|.+++.. |..+..+++|++|++++|.+.+ +|..+.++++|++|+ ++|.+.+..| ..+.++++|++
T Consensus 347 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 425 (570)
T 2z63_A 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425 (570)
T ss_dssp TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred CCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-ccccccccCCCCEEEccCCccccccchhhhhcCCCCCE
Confidence 47888888888887653 6678889999999999999885 454588999999999 7788887766 46889999999
Q ss_pred EEccccccccccc-cccCCCCcceecceeecCCCccc-cccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCC
Q 039201 146 LILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFT-GKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSK 223 (258)
Q Consensus 146 L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~-g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~ 223 (258)
|++++|.+++..| .+..+++|++ +++++|+++ +.+|..+..+++|++|++++|.+++. .|..++++++
T Consensus 426 L~l~~n~l~~~~~~~~~~l~~L~~----L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~l~~ 495 (570)
T 2z63_A 426 LDISHTHTRVAFNGIFNGLSSLEV----LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL------SPTAFNSLSS 495 (570)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCE----EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE------CTTTTTTCTT
T ss_pred EeCcCCcccccchhhhhcCCcCcE----EECcCCcCccccchhhhhcccCCCEEECCCCccccC------ChhhhhcccC
Confidence 9999999998888 8899999999 999999997 68999999999999999999999986 3567888888
Q ss_pred Cccc--cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201 224 LKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLNA 258 (258)
Q Consensus 224 L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G 258 (258)
|++| ++|++++..|..+..+++|+.|++++|+++|
T Consensus 496 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 8888 8999998888889999999999999999875
No 55
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.86 E-value=8.3e-21 Score=156.50 Aligned_cols=155 Identities=17% Similarity=0.146 Sum_probs=123.5
Q ss_pred CCCCCCCCCCccccceeeCCC---------CCcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCC
Q 039201 48 TSSWKASLNLCQWTGVTCSHR---------HPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLS 118 (258)
Q Consensus 48 ~~~w~~~~~~c~w~gv~c~~~---------~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~ 118 (258)
...|..+.+.|.|.+|.|+.. .++++.|++++|.+.+..|..+..+++|++|++++|.+....+..+.+++
T Consensus 9 ~~~~~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~ 88 (229)
T 3e6j_A 9 HSAACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT 88 (229)
T ss_dssp --CCCCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhccCCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCC
Confidence 345666778999999999752 13688889998888887788888888999999999888643335568888
Q ss_pred CCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCe
Q 039201 119 RLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLAR 196 (258)
Q Consensus 119 ~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~ 196 (258)
+|++|+ ++|.+++..+..+..+++|++|++++|+++ .+| .+..+++|++ |++++|++++..+..+..+++|+.
T Consensus 89 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~----L~L~~N~l~~~~~~~~~~l~~L~~ 163 (229)
T 3e6j_A 89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTH----LALDQNQLKSIPHGAFDRLSSLTH 163 (229)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSE----EECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCE----EECCCCcCCccCHHHHhCCCCCCE
Confidence 888888 777787655566788889999999999888 777 8888888888 888888888665666888888999
Q ss_pred EecCCCcCCcc
Q 039201 197 LNLGQKNLGIG 207 (258)
Q Consensus 197 L~ls~N~l~g~ 207 (258)
|++++|.+...
T Consensus 164 L~l~~N~~~c~ 174 (229)
T 3e6j_A 164 AYLFGNPWDCE 174 (229)
T ss_dssp EECTTSCBCTT
T ss_pred EEeeCCCccCC
Confidence 99998888765
No 56
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=7e-21 Score=162.46 Aligned_cols=171 Identities=23% Similarity=0.187 Sum_probs=147.0
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA 149 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~ 149 (258)
+++.+++++++++ .+|+.+. +.+++|++++|.+++..|..+.++++|++|+ ++|.+++ +|.. +.+++|++|+++
T Consensus 11 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~~L~Ls 85 (290)
T 1p9a_G 11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGTLDLS 85 (290)
T ss_dssp TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCCEEECC
T ss_pred CccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCCEEECC
Confidence 7899999999997 5676554 7899999999999987788899999999999 7777775 4443 889999999999
Q ss_pred ccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc-
Q 039201 150 ENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL- 227 (258)
Q Consensus 150 ~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L- 227 (258)
+|+++ .+| .+..+++|++ |++++|++++..|..+..+++|++|++++|.+++. .+..+..+++|+.|
T Consensus 86 ~N~l~-~l~~~~~~l~~L~~----L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~------~~~~~~~l~~L~~L~ 154 (290)
T 1p9a_G 86 HNQLQ-SLPLLGQTLPALTV----LDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL------PPGLLTPTPKLEKLS 154 (290)
T ss_dssp SSCCS-SCCCCTTTCTTCCE----EECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC------CTTTTTTCTTCCEEE
T ss_pred CCcCC-cCchhhccCCCCCE----EECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc------ChhhcccccCCCEEE
Confidence 99998 788 8899999999 99999999977778899999999999999999974 23456778888888
Q ss_pred -cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201 228 -QYNQLTGTIPDTTGELRNLQAPDLSENNLN 257 (258)
Q Consensus 228 -~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 257 (258)
++|++++..+..+..+++|++|+|++|+++
T Consensus 155 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 155 LANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp CTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 999999544455688999999999999986
No 57
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.85 E-value=2.5e-21 Score=182.70 Aligned_cols=171 Identities=18% Similarity=0.086 Sum_probs=144.8
Q ss_pred CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEc
Q 039201 70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLIL 148 (258)
Q Consensus 70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L 148 (258)
+++++|++++|.+++..+..+.++++|++|++++|.+++..|..++++++|++|+ ++|.+++..+..++++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 4799999999999987777899999999999999999988888899999999999 778888544447999999999999
Q ss_pred cccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhc--CCCCCc
Q 039201 149 AENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLR--NCSKLK 225 (258)
Q Consensus 149 ~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~--~l~~L~ 225 (258)
++|++++..| .++++++|++ +++++|++++..|..++++++|++|++++|.+++.. +..++ ++++|+
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~----L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLIT----LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK------SEELDIFANSSLK 174 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCE----EECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBC------HHHHGGGTTCEES
T ss_pred CCCccCccChhHccccCCCCE----EECCCCcccccCchhhcccccCCEEEccCCcccccC------HHHhhcccccccc
Confidence 9999987767 8999999999 999999999998999999999999999999998852 33333 456777
Q ss_pred cc--cccccccccchhhcCCCCCCeEe
Q 039201 226 TL--QYNQLTGTIPDTTGELRNLQAPD 250 (258)
Q Consensus 226 ~L--~~N~l~g~ip~~l~~l~~L~~L~ 250 (258)
.| ++|++++..|..+..+++|+.++
T Consensus 175 ~L~L~~n~l~~~~~~~~~~l~~L~~L~ 201 (680)
T 1ziw_A 175 KLELSSNQIKEFSPGCFHAIGRLFGLF 201 (680)
T ss_dssp EEECTTCCCCCBCTTGGGGSSEECEEE
T ss_pred EEECCCCcccccChhhhhhhhhhhhhh
Confidence 77 88999988887776654443333
No 58
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=4.1e-21 Score=174.16 Aligned_cols=183 Identities=19% Similarity=0.127 Sum_probs=139.1
Q ss_pred CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEc
Q 039201 70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLIL 148 (258)
Q Consensus 70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L 148 (258)
++++.|++++|.+.+..|..+.++++|++|++++|.+++..+..+.++++|++|+ ++|.+.+..|..+.++++|++|++
T Consensus 56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 135 (477)
T 2id5_A 56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEE
T ss_pred CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEEC
Confidence 4799999999999988888899999999999999999854445678899999999 788888888888889999999999
Q ss_pred cccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCch--------------
Q 039201 149 AENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLD-------------- 213 (258)
Q Consensus 149 ~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~-------------- 213 (258)
++|.+++..| .+.++++|++ |++++|++++..+..+..+++|+.|++++|.+++..+..+.
T Consensus 136 ~~n~l~~~~~~~~~~l~~L~~----L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~ 211 (477)
T 2id5_A 136 GDNDLVYISHRAFSGLNSLEQ----LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211 (477)
T ss_dssp CCTTCCEECTTSSTTCTTCCE----EEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCT
T ss_pred CCCccceeChhhccCCCCCCE----EECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCc
Confidence 9999887777 8888888888 77888887765555677777777777777777664322111
Q ss_pred ----hhhhhcCCCCCccc--cccccccccc-hhhcCCCCCCeEeccCCcCC
Q 039201 214 ----FITLLRNCSKLKTL--QYNQLTGTIP-DTTGELRNLQAPDLSENNLN 257 (258)
Q Consensus 214 ----~~~~l~~l~~L~~L--~~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~ 257 (258)
+++......+|+.| ++|+++ .+| ..+..+++|+.|+|++|+++
T Consensus 212 ~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~ 261 (477)
T 2id5_A 212 YLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS 261 (477)
T ss_dssp TCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSCCC
T ss_pred cccccCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeECCCCcCC
Confidence 11122222244554 667777 444 56788889999999998875
No 59
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=2.4e-21 Score=179.46 Aligned_cols=183 Identities=20% Similarity=0.214 Sum_probs=112.2
Q ss_pred CCCCCCCCCc-----cccce-eeCCCCCcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcE
Q 039201 49 SSWKASLNLC-----QWTGV-TCSHRHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLET 122 (258)
Q Consensus 49 ~~w~~~~~~c-----~w~gv-~c~~~~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~ 122 (258)
.+|..+.++| .|.++ .|... +++.|++++|++++ +|..+. ++|++|++++|.++ .+| ..+++|++
T Consensus 34 ~~W~~~~~~~~~~~~~~~~l~~C~~~--~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~ 104 (571)
T 3cvr_A 34 DKWEKQALPGENRNEAVSLLKECLIN--QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEY 104 (571)
T ss_dssp HHHHTTCCTTCCHHHHHHHHHHHHHT--TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCE
T ss_pred HHHhccCCccccccchhhhccccccC--CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCE
Confidence 3455555667 68888 67542 68888888888876 666553 66777777777776 566 34566666
Q ss_pred Ec-CCCccCCCCCcccCCCCCCCEEEcccccccccccc-c-----------------cCCCCcceecceeecCCCccccc
Q 039201 123 LI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLRS-I-----------------FNISSLEFQSSETEKSKNRFTGK 183 (258)
Q Consensus 123 L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p~-~-----------------~~l~~L~~l~l~L~l~~n~~~g~ 183 (258)
|+ ++|.+++ +|. +.+ +|++|++++|++++ +|. + ..+++|++ |++++|++++
T Consensus 105 L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N~l~~lp~~l~~L~~----L~Ls~N~L~~- 174 (571)
T 3cvr_A 105 LDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPELPALLEYINADNNQLTMLPELPTSLEV----LSVRNNQLTF- 174 (571)
T ss_dssp EECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCE----EECCSSCCSC-
T ss_pred EEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCCcCccccEEeCCCCccCcCCCcCCCcCE----EECCCCCCCC-
Confidence 66 5555554 555 433 55555555555543 333 0 02344555 6666666654
Q ss_pred cCccccCCCCCCeEecCCCcCCccCCCCchhhhhh-cCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201 184 LGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLL-RNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLNA 258 (258)
Q Consensus 184 ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l-~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G 258 (258)
+|. +. ++|++|++++|.++ .+|. ++..+ .....|+.| ++|+++ .+|..+..+++|+.|+|++|+++|
T Consensus 175 lp~-l~--~~L~~L~Ls~N~L~-~lp~---~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 175 LPE-LP--ESLEALDVSTNLLE-SLPA---VPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp CCC-CC--TTCCEEECCSSCCS-SCCC---CC--------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCH
T ss_pred cch-hh--CCCCEEECcCCCCC-chhh---HHHhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCC
Confidence 555 44 56666666666666 3332 11111 011112555 899998 799999899999999999999875
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.84 E-value=4.1e-21 Score=165.63 Aligned_cols=170 Identities=17% Similarity=0.127 Sum_probs=101.4
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcc-----------------cCCCCCCcEEc-CCCccCCC
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNE-----------------VGCLSRLETLI-GGYRLGGK 132 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~-----------------l~~l~~L~~L~-~~n~l~g~ 132 (258)
+++.|++++|.+++..+ +..+++|++|++++|.+++ +|.. ...+++|++|+ ++|.+++.
T Consensus 59 ~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~ 135 (317)
T 3o53_A 59 KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITML 135 (317)
T ss_dssp TCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSG
T ss_pred cCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-ccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCc
Confidence 55666666666554332 5555555555555555542 1100 01123344444 44444444
Q ss_pred CCcccCCCCCCCEEEccccccccccc-cc-cCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCC
Q 039201 133 IPESLGQLGSINYLILAENNFSGTLR-SI-FNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTS 210 (258)
Q Consensus 133 ip~~~~~l~~L~~L~L~~n~l~g~~p-~~-~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~ 210 (258)
.|..++.+++|++|++++|.+++..| .+ ..+++|++ +++++|++++. |. ...+++|++|++++|.+++
T Consensus 136 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~----L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~---- 205 (317)
T 3o53_A 136 RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH----LNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF---- 205 (317)
T ss_dssp GGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE----EECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE----
T ss_pred cchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCE----EECCCCcCccc-cc-ccccccCCEEECCCCcCCc----
Confidence 44455556666666666666665444 33 24566666 66666666533 22 2346667777777777665
Q ss_pred CchhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201 211 DLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLN 257 (258)
Q Consensus 211 ~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 257 (258)
+|+.+..+++|++| ++|+++ .+|..+..+++|+.|++++|+++
T Consensus 206 ---l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 206 ---MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp ---ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred ---chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 45557777778777 888888 67888888888999999888875
No 61
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=1.3e-20 Score=175.36 Aligned_cols=175 Identities=22% Similarity=0.159 Sum_probs=140.7
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA 149 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~ 149 (258)
.+++|||++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+ ++|++++..|..+.++++|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 689999999999977777899999999999999999966667789999999999 8888887666778999999999999
Q ss_pred ccccccccc-cccCCCCcceecceeecCCCcccc-ccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCcc-
Q 039201 150 ENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTG-KLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKT- 226 (258)
Q Consensus 150 ~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g-~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~- 226 (258)
+|++++..+ .++++++|++ |++++|++++ .+|..++.+++|++|++++|.+++..| ..++.+.+++.
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~----L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~l~~L~~l~~~ 202 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKE----LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC------TDLRVLHQMPLL 202 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCE----EECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG------GGGHHHHTCTTC
T ss_pred CCcCCCCChhhhhcCcccCe----eccccCccccCCCchhhccchhhhhhcccCcccccccc------ccccchhhhhhh
Confidence 999997666 7999999999 9999999975 578889999999999999999998643 33443333322
Q ss_pred -----ccccccccccchhhcCCCCCCeEeccCCcC
Q 039201 227 -----LQYNQLTGTIPDTTGELRNLQAPDLSENNL 256 (258)
Q Consensus 227 -----L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 256 (258)
++.|.++. ++........++.+++.+|..
T Consensus 203 ~~~~~ls~n~l~~-i~~~~~~~~~~~~l~l~~n~~ 236 (635)
T 4g8a_A 203 NLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFD 236 (635)
T ss_dssp CCEEECTTCCCCE-ECTTTTTTCEEEEEEEESCCS
T ss_pred hhhhhcccCcccc-cCcccccchhhhhhhhhcccc
Confidence 26777774 444444445566677766643
No 62
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.84 E-value=4.3e-20 Score=174.27 Aligned_cols=178 Identities=17% Similarity=0.188 Sum_probs=113.1
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCC-cccCCCCCCcEEc-CCCccCC-----------------
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIP-NEVGCLSRLETLI-GGYRLGG----------------- 131 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p-~~l~~l~~L~~L~-~~n~l~g----------------- 131 (258)
.++.+++++|.+.+..|..+..+++|++|++++|.+.+.+| ..+.++++|++|+ ++|.+.+
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 461 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence 56777777777777777778888888888888888877666 5667777777777 5555443
Q ss_pred ---------CCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCcccccc----C----ccccCCCC
Q 039201 132 ---------KIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKL----G----IDFNSLIN 193 (258)
Q Consensus 132 ---------~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~i----p----~~~~~l~~ 193 (258)
.+|..+.++++|++|++++|++++..| .+..+++|++ +++++|++++.. | ..++.+++
T Consensus 462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~----L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~ 537 (680)
T 1ziw_A 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEI----LDLQHNNLARLWKHANPGGPIYFLKGLSH 537 (680)
T ss_dssp TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE----EECCSSCCGGGGSTTSTTSCCCTTTTCTT
T ss_pred ccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCE----EeCCCCCccccchhhccCCcchhhcCCCC
Confidence 345555555556666666665554444 4555555665 556666555321 1 12455566
Q ss_pred CCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201 194 LARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLNA 258 (258)
Q Consensus 194 L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G 258 (258)
|++|++++|.++. +| +..++++++|+.| ++|++++..+..+..+++|+.|++++|++++
T Consensus 538 L~~L~L~~N~l~~-i~-----~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 598 (680)
T 1ziw_A 538 LHILNLESNGFDE-IP-----VEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598 (680)
T ss_dssp CCEEECCSSCCCC-CC-----TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCB
T ss_pred CCEEECCCCCCCC-CC-----HHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCc
Confidence 6666666666653 21 1246666777766 7777774444446777888888888887764
No 63
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.83 E-value=3e-20 Score=179.76 Aligned_cols=98 Identities=19% Similarity=0.151 Sum_probs=48.9
Q ss_pred cEEEEEcCCCCCcccC-CccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcc--cCCCCCCCEE
Q 039201 71 RVTKLDLRSKSIGGFL-SPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPES--LGQLGSINYL 146 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~l-p~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~--~~~l~~L~~L 146 (258)
+++.|++++|...+.+ |..+.++++|++|+|++|.+.+..|..++++++|++|+ ++|.+.+.+|.. ++++++|++|
T Consensus 49 ~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L 128 (844)
T 3j0a_A 49 QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL 128 (844)
T ss_dssp SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEE
T ss_pred cCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEE
Confidence 4555555555444444 33455555555555555555544455555555555555 444555444433 4555555555
Q ss_pred Eccccccccccc--cccCCCCcce
Q 039201 147 ILAENNFSGTLR--SIFNISSLEF 168 (258)
Q Consensus 147 ~L~~n~l~g~~p--~~~~l~~L~~ 168 (258)
++++|.+++..| .++++++|++
T Consensus 129 ~Ls~N~l~~~~~~~~~~~L~~L~~ 152 (844)
T 3j0a_A 129 DLSKNQIRSLYLHPSFGKLNSLKS 152 (844)
T ss_dssp EEESCCCCCCCCCGGGGTCSSCCE
T ss_pred ECCCCcccccccchhHhhCCCCCE
Confidence 555555544332 3445555555
No 64
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=2e-20 Score=172.09 Aligned_cols=178 Identities=19% Similarity=0.188 Sum_probs=155.9
Q ss_pred eeCCCCCcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCC
Q 039201 64 TCSHRHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGS 142 (258)
Q Consensus 64 ~c~~~~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~ 142 (258)
.|... .+ .+.++++++ .+|+.+. ++|++|++++|.+++..|..+.++++|++|+ ++|.+.+..|..++++++
T Consensus 3 ~C~~~--~~--c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 75 (549)
T 2z81_A 3 SCDAS--GV--CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS 75 (549)
T ss_dssp EECTT--SE--EECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cCCCC--ce--EECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhcccccc
Confidence 56543 23 788999887 6777654 7999999999999988888999999999999 889999888889999999
Q ss_pred CCEEEccccccccccc-cccCCCCcceecceeecCCCcccc-ccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcC
Q 039201 143 INYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTG-KLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRN 220 (258)
Q Consensus 143 L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g-~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~ 220 (258)
|++|++++|++++..| .++++++|++ |++++|++++ .+|..++++++|++|++++|.+.+.+| +..+++
T Consensus 76 L~~L~Ls~n~l~~~~~~~~~~l~~L~~----L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-----~~~~~~ 146 (549)
T 2z81_A 76 LEHLDLSDNHLSSLSSSWFGPLSSLKY----LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR-----RIDFAG 146 (549)
T ss_dssp CCEEECTTSCCCSCCHHHHTTCTTCCE----EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-----TTTTTT
T ss_pred CCEEECCCCccCccCHHHhccCCCCcE----EECCCCcccccchhhhhhccCCccEEECCCCccccccC-----Hhhhhc
Confidence 9999999999998777 6999999999 9999999986 567889999999999999999666543 246888
Q ss_pred CCCCccc--cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201 221 CSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLN 257 (258)
Q Consensus 221 l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 257 (258)
+++|++| ++|++++.+|..++.+++|++|+++.|.++
T Consensus 147 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred ccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 8888888 899999999999999999999999999764
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.83 E-value=6.9e-20 Score=154.63 Aligned_cols=169 Identities=15% Similarity=0.098 Sum_probs=135.0
Q ss_pred cCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcccccccc
Q 039201 77 LRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSG 155 (258)
Q Consensus 77 l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g 155 (258)
..+.++. .+|..+. +.|++|++++|.+++..+..+.++++|++|+ ++|.+.+..+..+.++++|++|++++|++++
T Consensus 14 c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 14 CMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (276)
T ss_dssp CTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred ecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence 3344443 4565443 5799999999999976666899999999999 7888887667789999999999999999998
Q ss_pred ccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--ccccc
Q 039201 156 TLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQL 232 (258)
Q Consensus 156 ~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l 232 (258)
..| .+.++++|++ +++++|++.+..+..++.+++|++|++++|.+++. .+|..++++++|++| ++|++
T Consensus 91 ~~~~~~~~l~~L~~----L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~l~~~~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 91 LALGAFSGLSSLQK----LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-----KLPEYFSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp ECTTTTTTCTTCCE----EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-----CCCGGGGGCTTCCEEECCSSCC
T ss_pred cChhhhcCCccccE----EECCCCCccccCchhcccCCCCCEEECcCCcccee-----cCchhhccCCCCCEEECCCCCC
Confidence 777 8999999999 99999999977776899999999999999999873 145678888888887 88888
Q ss_pred ccccchhhcCCCCCC----eEeccCCcCC
Q 039201 233 TGTIPDTTGELRNLQ----APDLSENNLN 257 (258)
Q Consensus 233 ~g~ip~~l~~l~~L~----~L~Ls~N~l~ 257 (258)
++..+..+..+++|+ .|++++|+++
T Consensus 162 ~~~~~~~~~~l~~L~~l~l~L~ls~n~l~ 190 (276)
T 2z62_A 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190 (276)
T ss_dssp CEECGGGGHHHHTCTTCCEEEECCSSCCC
T ss_pred CcCCHHHhhhhhhccccceeeecCCCccc
Confidence 866555555444444 5566665554
No 66
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=3e-20 Score=171.46 Aligned_cols=175 Identities=22% Similarity=0.204 Sum_probs=152.3
Q ss_pred CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEc
Q 039201 70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLIL 148 (258)
Q Consensus 70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L 148 (258)
++++.|++++|.+++..+..+..+++|++|++++|.+++..|..++++++|++|+ ++|.+.+..|..++++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 3799999999999988888999999999999999999977778899999999999 888888877789999999999999
Q ss_pred cccccccccc-cccCCCCcceecceeecCCCcccc-ccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCC--
Q 039201 149 AENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTG-KLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKL-- 224 (258)
Q Consensus 149 ~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g-~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L-- 224 (258)
++|++++..+ .++++++|++ |++++|.+++ .+|..++++++|++|++++|.+++. .+..++.+++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~----L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~ 177 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKE----LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI------YCTDLRVLHQMPL 177 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCE----EECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE------CGGGGHHHHTCTT
T ss_pred cccccccCCCccccccccccE----EecCCCccceecChhhhcccCCCCEEeCcCCcccee------cHHHccchhccch
Confidence 9999986555 7999999999 9999999987 5899999999999999999999885 24456666665
Q ss_pred --ccc--cccccccccchhhcCCCCCCeEeccCCc
Q 039201 225 --KTL--QYNQLTGTIPDTTGELRNLQAPDLSENN 255 (258)
Q Consensus 225 --~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 255 (258)
+.+ ++|.+++..|..+... +|+.|++++|.
T Consensus 178 ~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~ 211 (570)
T 2z63_A 178 LNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNF 211 (570)
T ss_dssp CCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCC
T ss_pred hhhhcccCCCCceecCHHHhccC-cceeEeccccc
Confidence 444 8999998777777655 89999998884
No 67
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=4.9e-21 Score=164.58 Aligned_cols=174 Identities=18% Similarity=0.115 Sum_probs=142.7
Q ss_pred CcEEEEEcCCCCCcccCC----ccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCC--CC--cccCCC
Q 039201 70 PRVTKLDLRSKSIGGFLS----PFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGK--IP--ESLGQL 140 (258)
Q Consensus 70 ~~v~~l~l~~~~l~g~lp----~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~--ip--~~~~~l 140 (258)
++++.|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..++++++|++|+ ++|.+.+. ++ ..++.+
T Consensus 117 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 196 (310)
T 4glp_A 117 LALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKF 196 (310)
T ss_dssp BCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSS
T ss_pred CCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcC
Confidence 378999999999988655 3556899999999999999988888899999999999 77877753 32 334789
Q ss_pred CCCCEEEcccccccc--ccc-c-ccCCCCcceecceeecCCCccccccCccccCC---CCCCeEecCCCcCCccCCCCch
Q 039201 141 GSINYLILAENNFSG--TLR-S-IFNISSLEFQSSETEKSKNRFTGKLGIDFNSL---INLARLNLGQKNLGIGTTSDLD 213 (258)
Q Consensus 141 ~~L~~L~L~~n~l~g--~~p-~-~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l---~~L~~L~ls~N~l~g~~p~~~~ 213 (258)
++|++|++++|+++. ..+ . +.++++|++ |++++|++.+.+|..++.+ ++|++|++++|.++ .+|..
T Consensus 197 ~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~----L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~-- 269 (310)
T 4glp_A 197 PAIQNLALRNTGMETPTGVCAALAAAGVQPHS----LDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKG-- 269 (310)
T ss_dssp CCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSS----EECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSC--
T ss_pred CCCCEEECCCCCCCchHHHHHHHHhcCCCCCE----EECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhh--
Confidence 999999999999972 222 2 468899999 9999999999889888887 69999999999999 45543
Q ss_pred hhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201 214 FITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLNA 258 (258)
Q Consensus 214 ~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G 258 (258)
+. ++|+.| ++|++++ +|. +..+++|+.|++++|+++.
T Consensus 270 ----~~--~~L~~L~Ls~N~l~~-~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 270 ----LP--AKLRVLDLSSNRLNR-APQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp ----CC--SCCSCEECCSCCCCS-CCC-TTSCCCCSCEECSSTTTSC
T ss_pred ----hc--CCCCEEECCCCcCCC-Cch-hhhCCCccEEECcCCCCCC
Confidence 22 466666 9999995 343 5788999999999999863
No 68
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=6.8e-20 Score=148.43 Aligned_cols=166 Identities=19% Similarity=0.150 Sum_probs=136.3
Q ss_pred EEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcccc
Q 039201 73 TKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAEN 151 (258)
Q Consensus 73 ~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n 151 (258)
+.++.+++++. .+|..+ .++|++|++++|.+++..+..+.++++|++|+ ++|.+.+..+..+.++++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 57788888876 456544 56899999999999965556678999999999 778888655556789999999999999
Q ss_pred ccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--c
Q 039201 152 NFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--Q 228 (258)
Q Consensus 152 ~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~ 228 (258)
++++..+ .+.++++|++ +++++|++++..+..+..+++|++|++++|.+++. .+..+.++++|++| +
T Consensus 87 ~l~~~~~~~~~~l~~L~~----L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~------~~~~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKE----LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV------PDGVFDRLTSLQYIWLH 156 (208)
T ss_dssp CCCCCCTTTTTTCTTCCE----EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC------CTTTTTTCTTCCEEECC
T ss_pred cCCccCHhHhcCccCCCE----EEcCCCcCcccCHhHhccCCcCCEEECCCCcccee------CHHHhccCCCccEEEec
Confidence 9996555 6789999999 99999999977676789999999999999999974 22347778888887 8
Q ss_pred ccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201 229 YNQLTGTIPDTTGELRNLQAPDLSENNLNA 258 (258)
Q Consensus 229 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G 258 (258)
+|.+.+. +++|++|+++.|+++|
T Consensus 157 ~N~~~~~-------~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 157 DNPWDCT-------CPGIRYLSEWINKHSG 179 (208)
T ss_dssp SCCBCCC-------TTTTHHHHHHHHHCTT
T ss_pred CCCeecC-------CCCHHHHHHHHHhCCc
Confidence 8887754 4578888888888876
No 69
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=8.8e-20 Score=156.83 Aligned_cols=166 Identities=16% Similarity=0.275 Sum_probs=135.4
Q ss_pred CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEc
Q 039201 70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLIL 148 (258)
Q Consensus 70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L 148 (258)
++++.|++++|.+.+. ++ +..+++|++|++++|.+++ +| .+.++++|++|+ ++|.+.+ +|. +..+++|++|++
T Consensus 63 ~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l 136 (308)
T 1h6u_A 63 NNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYL 136 (308)
T ss_dssp TTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEEC
Confidence 4789999999988754 44 8899999999999999875 44 588899999999 7777775 554 889999999999
Q ss_pred cccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc-
Q 039201 149 AENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL- 227 (258)
Q Consensus 149 ~~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L- 227 (258)
++|++++. +.+..+++|++ |++++|++++ ++. +..+++|++|++++|.+++. ++ +..+++|++|
T Consensus 137 ~~n~l~~~-~~l~~l~~L~~----L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~-------~~-l~~l~~L~~L~ 201 (308)
T 1h6u_A 137 DLNQITNI-SPLAGLTNLQY----LSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDI-------SP-LASLPNLIEVH 201 (308)
T ss_dssp CSSCCCCC-GGGGGCTTCCE----EECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-------GG-GGGCTTCCEEE
T ss_pred CCCccCcC-ccccCCCCccE----EEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcC-------hh-hcCCCCCCEEE
Confidence 99998854 44778899999 8999999885 444 88899999999999999873 22 7788888888
Q ss_pred -cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201 228 -QYNQLTGTIPDTTGELRNLQAPDLSENNLNA 258 (258)
Q Consensus 228 -~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G 258 (258)
++|++++.. .+..+++|+.|++++|++++
T Consensus 202 L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 202 LKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred ccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 899998544 37889999999999998764
No 70
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=9.3e-20 Score=155.50 Aligned_cols=164 Identities=20% Similarity=0.258 Sum_probs=141.0
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA 149 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~ 149 (258)
+++.++++++.+.. ++ .+..+++|++|++++|.+++ +++ +.++++|++|+ ++|.+.+ +| .+..+++|++|+++
T Consensus 47 ~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 47 SIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE 120 (291)
T ss_dssp TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred cccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECC
Confidence 78999999999875 34 48899999999999999986 444 89999999999 7777775 44 49999999999999
Q ss_pred ccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--
Q 039201 150 ENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL-- 227 (258)
Q Consensus 150 ~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L-- 227 (258)
+|++++ ++.+..+++|++ |++++|++++. ..++.+++|++|++++|.+++. ++ +..+++|++|
T Consensus 121 ~n~i~~-~~~l~~l~~L~~----L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~-------~~-l~~l~~L~~L~L 185 (291)
T 1h6t_A 121 HNGISD-INGLVHLPQLES----LYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-------VP-LAGLTKLQNLYL 185 (291)
T ss_dssp TSCCCC-CGGGGGCTTCCE----EECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-------GG-GTTCTTCCEEEC
T ss_pred CCcCCC-ChhhcCCCCCCE----EEccCCcCCcc--hhhccCCCCCEEEccCCccccc-------hh-hcCCCccCEEEC
Confidence 999985 577889999999 99999999864 5689999999999999999884 33 8888888888
Q ss_pred cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201 228 QYNQLTGTIPDTTGELRNLQAPDLSENNLN 257 (258)
Q Consensus 228 ~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 257 (258)
++|++++ +| .+..+++|+.|++++|+++
T Consensus 186 ~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 186 SKNHISD-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred CCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence 8999985 55 4899999999999999875
No 71
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=1.6e-19 Score=155.12 Aligned_cols=165 Identities=22% Similarity=0.275 Sum_probs=142.3
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA 149 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~ 149 (258)
+++.|+++++++.. ++ .+..+++|++|++++|.+.+ ++. +.++++|++|+ ++|.+.+ +| .+..+++|++|+++
T Consensus 42 ~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECT
T ss_pred CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECC
Confidence 79999999999874 55 58899999999999999985 555 89999999999 7777775 44 69999999999999
Q ss_pred ccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--
Q 039201 150 ENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL-- 227 (258)
Q Consensus 150 ~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L-- 227 (258)
+|++++ +|.+..+++|++ |++++|++++. +. ++.+++|++|++++|.+++. ++ +.++++|+.|
T Consensus 116 ~n~l~~-~~~l~~l~~L~~----L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~-------~~-l~~l~~L~~L~l 180 (308)
T 1h6u_A 116 STQITD-VTPLAGLSNLQV----LYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDL-------TP-LANLSKLTTLKA 180 (308)
T ss_dssp TSCCCC-CGGGTTCTTCCE----EECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCC-------GG-GTTCTTCCEEEC
T ss_pred CCCCCC-chhhcCCCCCCE----EECCCCccCcC-cc-ccCCCCccEEEccCCcCCCC-------hh-hcCCCCCCEEEC
Confidence 999985 566889999999 99999999854 43 88999999999999999873 33 8888888888
Q ss_pred cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201 228 QYNQLTGTIPDTTGELRNLQAPDLSENNLNA 258 (258)
Q Consensus 228 ~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G 258 (258)
++|++++ +|. +..+++|++|++++|++++
T Consensus 181 ~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~~ 209 (308)
T 1h6u_A 181 DDNKISD-ISP-LASLPNLIEVHLKNNQISD 209 (308)
T ss_dssp CSSCCCC-CGG-GGGCTTCCEEECTTSCCCB
T ss_pred CCCccCc-Chh-hcCCCCCCEEEccCCccCc
Confidence 8999985 443 8899999999999999874
No 72
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.82 E-value=5e-20 Score=171.45 Aligned_cols=170 Identities=15% Similarity=0.096 Sum_probs=141.6
Q ss_pred EcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccc
Q 039201 76 DLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFS 154 (258)
Q Consensus 76 ~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~ 154 (258)
+-++.+++ .+|+.+. +.+++|||++|.+++..|..|.++++|++|+ ++|++++..|..|.++++|++|+|++|+++
T Consensus 37 ~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 37 QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp ECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred ECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC
Confidence 44455665 5676542 5799999999999966667899999999999 888888766778999999999999999999
Q ss_pred cccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccc
Q 039201 155 GTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQ 231 (258)
Q Consensus 155 g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~ 231 (258)
+..| .+.++++|++ |++++|++++..+..++++++|++|++++|.+++.. .|..++++++|++| ++|+
T Consensus 114 ~l~~~~f~~L~~L~~----L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~-----~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 114 SLALGAFSGLSSLQK----LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK-----LPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp EECGGGGTTCTTCCE----EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC-----CCGGGGGCTTCCEEECCSSC
T ss_pred CCCHHHhcCCCCCCE----EECCCCcCCCCChhhhhcCcccCeeccccCccccCC-----CchhhccchhhhhhcccCcc
Confidence 7666 7899999999 999999999766677999999999999999997631 46778888999988 9999
Q ss_pred cccccchhhcCCCCC----CeEeccCCcCC
Q 039201 232 LTGTIPDTTGELRNL----QAPDLSENNLN 257 (258)
Q Consensus 232 l~g~ip~~l~~l~~L----~~L~Ls~N~l~ 257 (258)
+++..|..+..+.++ ..++++.|+++
T Consensus 185 l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~ 214 (635)
T 4g8a_A 185 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 214 (635)
T ss_dssp CCEECGGGGHHHHTCTTCCCEEECTTCCCC
T ss_pred ccccccccccchhhhhhhhhhhhcccCccc
Confidence 998888887665544 46888888875
No 73
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=1.4e-19 Score=148.37 Aligned_cols=151 Identities=15% Similarity=0.135 Sum_probs=119.7
Q ss_pred EEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCC-cccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcccc
Q 039201 74 KLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIP-NEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAEN 151 (258)
Q Consensus 74 ~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p-~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n 151 (258)
.++++++.++ .+|..+. ..+++|++++|.+++..| ..+.++++|++|+ ++|.+++..|..+.++++|++|+|++|
T Consensus 15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 5667777776 4676553 456899999999987655 3478899999998 778888766778889999999999999
Q ss_pred ccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--c
Q 039201 152 NFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--Q 228 (258)
Q Consensus 152 ~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~ 228 (258)
++++..| .+..+++|++ |++++|++++..|..+..+++|++|++++|.+++.. |..+..+++|+.| +
T Consensus 92 ~l~~~~~~~~~~l~~L~~----L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKT----LMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA------PGAFDTLHSLSTLNLL 161 (220)
T ss_dssp CCCCCCGGGGTTCSSCCE----EECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC------TTTTTTCTTCCEEECC
T ss_pred ccCccCHhHhcCCcCCCE----EECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC------HHHhcCCCCCCEEEec
Confidence 9987666 6888999999 889999998888888888999999999999888752 4556666777666 7
Q ss_pred ccccccccc
Q 039201 229 YNQLTGTIP 237 (258)
Q Consensus 229 ~N~l~g~ip 237 (258)
+|.+++..+
T Consensus 162 ~N~l~c~c~ 170 (220)
T 2v70_A 162 ANPFNCNCY 170 (220)
T ss_dssp SCCEECSGG
T ss_pred CcCCcCCCc
Confidence 777776544
No 74
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=2.1e-19 Score=147.25 Aligned_cols=148 Identities=18% Similarity=0.209 Sum_probs=126.4
Q ss_pred CCccccceeeCCCC---------CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-C
Q 039201 56 NLCQWTGVTCSHRH---------PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-G 125 (258)
Q Consensus 56 ~~c~w~gv~c~~~~---------~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~ 125 (258)
..|.|..+.|.... +.++.|++++|++.+..+..+..+++|++|+|++|.+++..|..+.++++|++|+ +
T Consensus 9 C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 9 CTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp SEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 45789999997422 3689999999999877777899999999999999999987788899999999999 7
Q ss_pred CCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcC
Q 039201 126 GYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNL 204 (258)
Q Consensus 126 ~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l 204 (258)
+|.++...+..+.++++|++|+|++|++++..| .+..+++|++ |++++|++++..+..+..+++|++|++++|.+
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~----L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL----LSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE----EECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCE----EECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 788875444456889999999999999998777 8889999999 99999999977777788999999999999988
Q ss_pred Ccc
Q 039201 205 GIG 207 (258)
Q Consensus 205 ~g~ 207 (258)
...
T Consensus 165 ~c~ 167 (220)
T 2v9t_B 165 ICD 167 (220)
T ss_dssp ECS
T ss_pred CCC
Confidence 653
No 75
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.81 E-value=1.3e-19 Score=145.75 Aligned_cols=150 Identities=13% Similarity=0.198 Sum_probs=91.6
Q ss_pred CCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcce
Q 039201 91 GNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEF 168 (258)
Q Consensus 91 ~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~ 168 (258)
+.+++|++|++++|.+. .+| .+..+++|++|+ ++|.+ ..++.+..+++|++|++++|++++..| .+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHA--TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCC--SCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCC--CcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 34445555555555555 444 355555555555 33322 223356666777777777777766555 6666777777
Q ss_pred ecceeecCCCccccccCccccCCCCCCeEecCCCc-CCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCC
Q 039201 169 QSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKN-LGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRN 245 (258)
Q Consensus 169 l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~-l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~ 245 (258)
|++++|++++..|..++.+++|++|++++|. ++. + +.+.++++|++| ++|++++ ++ .+..+++
T Consensus 117 ----L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-------~-~~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~ 182 (197)
T 4ezg_A 117 ----LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-------I-MPLKTLPELKSLNIQFDGVHD-YR-GIEDFPK 182 (197)
T ss_dssp ----EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-------C-GGGGGCSSCCEEECTTBCCCC-CT-TGGGCSS
T ss_pred ----EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-------c-HhhcCCCCCCEEECCCCCCcC-hH-HhccCCC
Confidence 6677777766666666777777777777776 433 2 246666666666 6677764 44 6777888
Q ss_pred CCeEeccCCcCCC
Q 039201 246 LQAPDLSENNLNA 258 (258)
Q Consensus 246 L~~L~Ls~N~l~G 258 (258)
|++|++++|++.+
T Consensus 183 L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 183 LNQLYAFSQTIGG 195 (197)
T ss_dssp CCEEEECBC----
T ss_pred CCEEEeeCcccCC
Confidence 8889998888754
No 76
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=1.9e-19 Score=147.53 Aligned_cols=149 Identities=20% Similarity=0.222 Sum_probs=132.7
Q ss_pred CCccccceeeCCCC---------CcEEEEEcCCCCCcccCC-ccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-
Q 039201 56 NLCQWTGVTCSHRH---------PRVTKLDLRSKSIGGFLS-PFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI- 124 (258)
Q Consensus 56 ~~c~w~gv~c~~~~---------~~v~~l~l~~~~l~g~lp-~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~- 124 (258)
..|.|..+.|+... ..++.|++++|.+++..+ ..+..+++|++|++++|.+++..|..+.++++|++|+
T Consensus 9 C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 9 CRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 45789989887421 257899999999998755 4588999999999999999977777899999999999
Q ss_pred CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCc
Q 039201 125 GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKN 203 (258)
Q Consensus 125 ~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~ 203 (258)
++|.+++..|..+.++++|++|+|++|++++..| .+..+++|++ |++++|++++..|..+..+++|++|++++|.
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~----L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRL----LSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSE----EECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCE----EECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 8899988777789999999999999999998888 8999999999 9999999998889999999999999999999
Q ss_pred CCccC
Q 039201 204 LGIGT 208 (258)
Q Consensus 204 l~g~~ 208 (258)
+.+..
T Consensus 165 l~c~c 169 (220)
T 2v70_A 165 FNCNC 169 (220)
T ss_dssp EECSG
T ss_pred CcCCC
Confidence 98764
No 77
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=3.3e-19 Score=154.40 Aligned_cols=105 Identities=17% Similarity=0.099 Sum_probs=54.9
Q ss_pred CCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhc
Q 039201 141 GSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLR 219 (258)
Q Consensus 141 ~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~ 219 (258)
++|++|++++|.+++..| .+..+++|++ +++++|++++..|..+..+++|++|++++|.++. +|..+.
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~----L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-------lp~~l~ 261 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSKLYR----LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-------VPAGLP 261 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTTCSC----CBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB-------CCTTGG
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCCCCE----EECCCCcCCcCChhHhhCCCCCCEEECCCCcCee-------cChhhh
Confidence 345555555555554444 5555566666 5566666655555555566666666666666552 334445
Q ss_pred CCCCCccc--cccccccccchhhcC------CCCCCeEeccCCcC
Q 039201 220 NCSKLKTL--QYNQLTGTIPDTTGE------LRNLQAPDLSENNL 256 (258)
Q Consensus 220 ~l~~L~~L--~~N~l~g~ip~~l~~------l~~L~~L~Ls~N~l 256 (258)
++++|++| ++|++++..+..+.. ..+|+.+++++|++
T Consensus 262 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred cCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcc
Confidence 55555555 555555333333322 23455555555544
No 78
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=5.5e-19 Score=145.56 Aligned_cols=159 Identities=21% Similarity=0.169 Sum_probs=128.8
Q ss_pred ccceeeCCCCCcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccC
Q 039201 60 WTGVTCSHRHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLG 138 (258)
Q Consensus 60 w~gv~c~~~~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~ 138 (258)
|..-.|+ .+.++.+++++. .+|..+. ++|++|++++|.+++..|..+.++++|++|+ ++|.+.+..+..+.
T Consensus 14 ~~~~~Cs-----~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~ 85 (229)
T 3e6j_A 14 PSQCSCS-----GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD 85 (229)
T ss_dssp CTTCEEE-----TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCCEEe-----CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcc
Confidence 4455664 356889888886 6776554 8999999999999988888899999999999 77887654445678
Q ss_pred CCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhh
Q 039201 139 QLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITL 217 (258)
Q Consensus 139 ~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~ 217 (258)
++++|++|+|++|++++..+ .+..+++|++ |++++|+++ .+|..+..+++|++|++++|.+++.. +..
T Consensus 86 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~----L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~------~~~ 154 (229)
T 3e6j_A 86 SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKE----LFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIP------HGA 154 (229)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCE----EECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCC------TTT
T ss_pred cCCCcCEEECCCCcCCccChhHhCcchhhCe----EeccCCccc-ccCcccccCCCCCEEECCCCcCCccC------HHH
Confidence 99999999999999996656 6788999999 999999998 88999999999999999999998631 244
Q ss_pred hcCCCCCccc--cccccccccc
Q 039201 218 LRNCSKLKTL--QYNQLTGTIP 237 (258)
Q Consensus 218 l~~l~~L~~L--~~N~l~g~ip 237 (258)
+..+++|+.| ++|.+++..+
T Consensus 155 ~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 155 FDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TTTCTTCCEEECTTSCBCTTBG
T ss_pred HhCCCCCCEEEeeCCCccCCcc
Confidence 6667777776 7888776544
No 79
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=4.6e-19 Score=153.32 Aligned_cols=172 Identities=15% Similarity=0.134 Sum_probs=104.2
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCc--CCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEE
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYY--GEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLI 147 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~--g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~ 147 (258)
.++.|++++|.+.+..+..+..+++|++|++++|.+. |..+..+.++++|++|+ ++|.++ .+|..+. ++|++|+
T Consensus 122 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~ 198 (330)
T 1xku_A 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELH 198 (330)
T ss_dssp TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEE
T ss_pred cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEE
Confidence 3444444444444443444566666777777766664 24555566667777666 444444 3444432 5666677
Q ss_pred ccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCcc
Q 039201 148 LAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKT 226 (258)
Q Consensus 148 L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~ 226 (258)
+++|++++..| .+..+++|++ |++++|++++..+..+..+++|++|++++|.++. +|..+..+++|++
T Consensus 199 l~~n~l~~~~~~~~~~l~~L~~----L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-------lp~~l~~l~~L~~ 267 (330)
T 1xku_A 199 LDGNKITKVDAASLKGLNNLAK----LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-------VPGGLADHKYIQV 267 (330)
T ss_dssp CTTSCCCEECTGGGTTCTTCCE----EECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-------CCTTTTTCSSCCE
T ss_pred CCCCcCCccCHHHhcCCCCCCE----EECCCCcCceeChhhccCCCCCCEEECCCCcCcc-------CChhhccCCCcCE
Confidence 77777666556 6667777777 7777777776666667777777777777777763 3455666666666
Q ss_pred c--cccccccccchhhcC------CCCCCeEeccCCcC
Q 039201 227 L--QYNQLTGTIPDTTGE------LRNLQAPDLSENNL 256 (258)
Q Consensus 227 L--~~N~l~g~ip~~l~~------l~~L~~L~Ls~N~l 256 (258)
| ++|++++..+..+.. .+.++.+++++|.+
T Consensus 268 L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 268 VYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp EECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred EECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence 6 666666433333322 25566666666655
No 80
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=1.8e-19 Score=158.21 Aligned_cols=170 Identities=18% Similarity=0.168 Sum_probs=126.6
Q ss_pred EEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccC-CCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcccc
Q 039201 74 KLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVG-CLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAEN 151 (258)
Q Consensus 74 ~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~-~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n 151 (258)
.++++++++. .+|..+. ..+++|+|++|.+++..+..+. ++++|++|+ ++|.+++..|..+.++++|++|+|++|
T Consensus 22 ~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 4556666665 3565443 4578888888888865556666 888888888 777787766677888888888888888
Q ss_pred ccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhh-h---cCCCCCcc
Q 039201 152 NFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITL-L---RNCSKLKT 226 (258)
Q Consensus 152 ~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~-l---~~l~~L~~ 226 (258)
++++..+ .+..+++|++ |++++|++++..|..+..+++|++|++++|.+++ +|.. + .++++|+.
T Consensus 99 ~l~~~~~~~~~~l~~L~~----L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-------l~~~~~~~~~~l~~L~~ 167 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEV----LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-------FPVELIKDGNKLPKLML 167 (361)
T ss_dssp CCCEECTTTTTTCTTCCE----EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-------CCGGGTC----CTTCCE
T ss_pred cCCcCCHHHhCCCcCCCE----EECCCCcccEECHHHhCCcccCCEEECCCCcCCe-------eCHHHhcCcccCCcCCE
Confidence 8886656 6788888888 8888888887778888888888888888888886 2332 2 56777777
Q ss_pred c--cccccccccchhhcCCCC--CCeEeccCCcCC
Q 039201 227 L--QYNQLTGTIPDTTGELRN--LQAPDLSENNLN 257 (258)
Q Consensus 227 L--~~N~l~g~ip~~l~~l~~--L~~L~Ls~N~l~ 257 (258)
| ++|++++..+..+..+++ ++.|+|++|.++
T Consensus 168 L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 168 LDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp EECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred EECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 6 888888544466777776 478888888764
No 81
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=5.4e-19 Score=144.75 Aligned_cols=149 Identities=18% Similarity=0.173 Sum_probs=118.1
Q ss_pred EEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcccc
Q 039201 73 TKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAEN 151 (258)
Q Consensus 73 ~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n 151 (258)
+.+++++++++ .+|..+. +.|++|++++|.+++..+..+.++++|++|+ ++|.+++..|..+.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 46888898887 5676554 7899999999999866666788899999998 888888877888999999999999999
Q ss_pred ccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--c
Q 039201 152 NFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--Q 228 (258)
Q Consensus 152 ~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~ 228 (258)
+++...+ .+..+++|++ |++++|++++..|..+..+++|++|++++|.+++.. +..+..+++|++| +
T Consensus 91 ~l~~l~~~~f~~l~~L~~----L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQL----LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA------KGTFSPLRAIQTMHLA 160 (220)
T ss_dssp CCCCCCTTTTTTCTTCCE----EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC------TTTTTTCTTCCEEECC
T ss_pred cCCccCHhHccCCCCCCE----EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC------HHHHhCCCCCCEEEeC
Confidence 9984434 5678899999 889999998888888888999999999999888742 2345556666655 6
Q ss_pred cccccc
Q 039201 229 YNQLTG 234 (258)
Q Consensus 229 ~N~l~g 234 (258)
+|++..
T Consensus 161 ~N~~~c 166 (220)
T 2v9t_B 161 QNPFIC 166 (220)
T ss_dssp SSCEEC
T ss_pred CCCcCC
Confidence 666653
No 82
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.80 E-value=2.6e-20 Score=177.48 Aligned_cols=195 Identities=20% Similarity=0.212 Sum_probs=127.1
Q ss_pred hHHHHHHHHHhC-CCCCCCCCCCCC-CCCCccccceeeCCCCCcEEEEEcC------------------CCCCcc-----
Q 039201 30 KTDHLLAIKSQL-QDPLGPTSSWKA-SLNLCQWTGVTCSHRHPRVTKLDLR------------------SKSIGG----- 84 (258)
Q Consensus 30 ~~~aL~~~~~~~-~~~~~~~~~w~~-~~~~c~w~gv~c~~~~~~v~~l~l~------------------~~~l~g----- 84 (258)
+++++.+++.++ ...+.....|.. ....+.|.++.++. ++++.+++. .+.+.+
T Consensus 133 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~ 210 (727)
T 4b8c_D 133 TKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIE 210 (727)
T ss_dssp CCHHHHHHHHHHHHHHTTC-------------------------------------------------------------
T ss_pred chhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCcchhhHhhcCccCcccccCccccc
Confidence 344899998877 222333445643 33556787776654 244444443 333322
Q ss_pred ----cCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-
Q 039201 85 ----FLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR- 158 (258)
Q Consensus 85 ----~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p- 158 (258)
..+..+..+..|++|+|++|.+. .+|..+.++++|++|+ ++|.++ .+|..++++++|++|+|++|.++ .+|
T Consensus 211 n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~ 287 (727)
T 4b8c_D 211 NRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPA 287 (727)
T ss_dssp -----------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCS
T ss_pred cceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccCh
Confidence 23566888999999999999998 8998899999999999 778888 89999999999999999999999 889
Q ss_pred cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCC---ccccccccccc
Q 039201 159 SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKL---KTLQYNQLTGT 235 (258)
Q Consensus 159 ~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L---~~L~~N~l~g~ 235 (258)
.++++++|++ |+|++|.++ .+|..++.+++|++|+|++|.+++. .|..+..+... .+|++|.++|.
T Consensus 288 ~~~~l~~L~~----L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~------~p~~~~~~~~~~~~l~l~~N~l~~~ 356 (727)
T 4b8c_D 288 ELGSCFQLKY----FYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQ------FLKILTEKSVTGLIFYLRDNRPEIP 356 (727)
T ss_dssp SGGGGTTCSE----EECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSH------HHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred hhcCCCCCCE----EECCCCCCC-ccChhhhcCCCccEEeCCCCccCCC------ChHHHhhcchhhhHHhhccCcccCc
Confidence 9999999999 999999997 8899999999999999999999997 34444433211 12478888888
Q ss_pred cchhh
Q 039201 236 IPDTT 240 (258)
Q Consensus 236 ip~~l 240 (258)
+|..+
T Consensus 357 ~p~~l 361 (727)
T 4b8c_D 357 LPHER 361 (727)
T ss_dssp CCCC-
T ss_pred Ccccc
Confidence 87654
No 83
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.80 E-value=5.4e-19 Score=160.03 Aligned_cols=165 Identities=21% Similarity=0.278 Sum_probs=103.3
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA 149 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~ 149 (258)
+++.+++++|.+.+. +.+..+++|++|++++|.+.+..| +..+++|++|+ ++|.+.+ +|+ +..+++|++|+++
T Consensus 222 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~ 295 (466)
T 1o6v_A 222 NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELN 295 (466)
T ss_dssp TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECC
T ss_pred CCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc-ccc-ccCCCccCeEEcC
Confidence 445555555554431 234555566666666666554322 55666666666 5555554 233 5666666666666
Q ss_pred ccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--
Q 039201 150 ENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL-- 227 (258)
Q Consensus 150 ~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L-- 227 (258)
+|++++.. .+..+++|++ +++++|++++..| +..+++|++|++++|.+++. +.++++++|+.|
T Consensus 296 ~n~l~~~~-~~~~l~~L~~----L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--------~~l~~l~~L~~L~l 360 (466)
T 1o6v_A 296 ENQLEDIS-PISNLKNLTY----LTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--------SSLANLTNINWLSA 360 (466)
T ss_dssp SSCCSCCG-GGGGCTTCSE----EECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--------GGGTTCTTCCEEEC
T ss_pred CCcccCch-hhcCCCCCCE----EECcCCcCCCchh--hccCccCCEeECCCCccCCc--------hhhccCCCCCEEeC
Confidence 66666433 3556666666 6777777765544 56677777777777777652 456777777777
Q ss_pred cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201 228 QYNQLTGTIPDTTGELRNLQAPDLSENNLNA 258 (258)
Q Consensus 228 ~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G 258 (258)
++|++++..| +..+++|+.|++++|+++|
T Consensus 361 ~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 361 GHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 7888887666 7778888888888887764
No 84
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.80 E-value=1.2e-18 Score=157.61 Aligned_cols=162 Identities=24% Similarity=0.216 Sum_probs=99.6
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA 149 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~ 149 (258)
+++.|++++|.+++. | ++.+++|++|++++|.+++ +| ++++++|++|+ ++|.+++ +| ++.+++|++|+++
T Consensus 65 ~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~ 135 (457)
T 3bz5_A 65 GLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCA 135 (457)
T ss_dssp TCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECT
T ss_pred CCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECC
Confidence 677777777777653 3 6777777777777777765 33 66777777777 6666665 43 6666777777777
Q ss_pred ccccccccccccCCCCcceecce------------------eecCCCccccccCccccCCCCCCeEecCCCcCCccCCCC
Q 039201 150 ENNFSGTLRSIFNISSLEFQSSE------------------TEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSD 211 (258)
Q Consensus 150 ~n~l~g~~p~~~~l~~L~~l~l~------------------L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~ 211 (258)
+|++++ +| ++++++|++|+++ +++++|++++ +| ++.+++|+.|++++|.+++.
T Consensus 136 ~N~l~~-l~-l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---- 206 (457)
T 3bz5_A 136 RNTLTE-ID-VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---- 206 (457)
T ss_dssp TSCCSC-CC-CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC----
T ss_pred CCccce-ec-cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee----
Confidence 776664 22 3444444440000 4455555543 33 44555555555555555441
Q ss_pred chhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201 212 LDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLNA 258 (258)
Q Consensus 212 ~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G 258 (258)
.++++++|++| ++|++++ +| ++.+++|++|++++|+++|
T Consensus 207 -----~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 207 -----DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp -----CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred -----ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence 25556666666 7777775 66 6777778888888877764
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.79 E-value=2.7e-19 Score=147.96 Aligned_cols=170 Identities=17% Similarity=0.105 Sum_probs=142.3
Q ss_pred CcEEEEEcCCCC-CcccCCccCCCCCCCCEEEccC-CCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCC--
Q 039201 70 PRVTKLDLRSKS-IGGFLSPFVGNPSFVRVIVLAN-NSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSIN-- 144 (258)
Q Consensus 70 ~~v~~l~l~~~~-l~g~lp~~~~~l~~L~~L~Ls~-n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~-- 144 (258)
++++.|++++|. +++..+..+..+++|++|++++ |.+++..+..+.++++|++|+ ++|.+++ +|. +..+++|+
T Consensus 55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L 132 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIF 132 (239)
T ss_dssp TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSE
T ss_pred CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccc
Confidence 489999999997 8765556889999999999998 999865557789999999999 7777876 887 88999998
Q ss_pred -EEEcccc-ccccccc-cccCCCCcc-eecceeecCCCccccccCccccCCCCCCeEecCCCc-CCccCCCCchhhhhhc
Q 039201 145 -YLILAEN-NFSGTLR-SIFNISSLE-FQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKN-LGIGTTSDLDFITLLR 219 (258)
Q Consensus 145 -~L~L~~n-~l~g~~p-~~~~l~~L~-~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~-l~g~~p~~~~~~~~l~ 219 (258)
+|++++| ++++..+ .+..+++|+ + +++++|+++ .+|......++|++|++++|. +++. .+..+.
T Consensus 133 ~~L~l~~N~~l~~i~~~~~~~l~~L~~~----L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i------~~~~~~ 201 (239)
T 2xwt_C 133 FILEITDNPYMTSIPVNAFQGLCNETLT----LKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVI------DKDAFG 201 (239)
T ss_dssp EEEEEESCTTCCEECTTTTTTTBSSEEE----EECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEE------CTTTTT
T ss_pred cEEECCCCcchhhcCcccccchhcceeE----EEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccC------CHHHhh
Confidence 9999999 9986555 688999999 9 999999998 777765555899999999995 8863 234577
Q ss_pred CC-CCCccc--cccccccccchhhcCCCCCCeEeccCCc
Q 039201 220 NC-SKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENN 255 (258)
Q Consensus 220 ~l-~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 255 (258)
++ ++|+.| ++|+++ .+|.. .+++|+.|+++++.
T Consensus 202 ~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 202 GVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred ccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence 77 888887 899998 67765 68899999998863
No 86
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.79 E-value=7.9e-19 Score=152.57 Aligned_cols=166 Identities=20% Similarity=0.341 Sum_probs=97.7
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA 149 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~ 149 (258)
+++.+++++|.+.+. ++ +..+++|++|++++|.+.+. +. +..+++|++|+ ++|.+++ +|. +..+++|++|+++
T Consensus 178 ~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~-~~-~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~ 251 (347)
T 4fmz_A 178 DLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDI-TP-VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIG 251 (347)
T ss_dssp TCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECC
T ss_pred CCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCC-ch-hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECC
Confidence 344444544444322 22 44455555555555555432 22 55566666666 5555543 333 6666777777777
Q ss_pred ccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--
Q 039201 150 ENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL-- 227 (258)
Q Consensus 150 ~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L-- 227 (258)
+|.+++ ++.+..+++|++ +++++|++++. +.+..+++|++|++++|.+++. .+..++++++|++|
T Consensus 252 ~n~l~~-~~~~~~l~~L~~----L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~------~~~~l~~l~~L~~L~L 318 (347)
T 4fmz_A 252 TNQISD-INAVKDLTKLKM----LNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNE------DMEVIGGLTNLTTLFL 318 (347)
T ss_dssp SSCCCC-CGGGTTCTTCCE----EECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGG------GHHHHHTCTTCSEEEC
T ss_pred CCccCC-ChhHhcCCCcCE----EEccCCccCCC--hhhcCCCCCCEEECcCCcCCCc------ChhHhhccccCCEEEc
Confidence 776653 355666667777 77777776643 3466677777777777777664 44566777777766
Q ss_pred cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201 228 QYNQLTGTIPDTTGELRNLQAPDLSENNLN 257 (258)
Q Consensus 228 ~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 257 (258)
++|++++..| +..+++|++|++++|+++
T Consensus 319 ~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 319 SQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cCCccccccC--hhhhhccceeehhhhccc
Confidence 7777775444 666777777777777764
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=2.6e-20 Score=161.17 Aligned_cols=175 Identities=25% Similarity=0.234 Sum_probs=125.7
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCC-CCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEc
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGE-IPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLIL 148 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~-~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L 148 (258)
+++.++++++.+.+..++ +..+++|++|++++|.+.+. +|..+.++++|++|+ ++|.+++..|..++.+++|++|++
T Consensus 71 ~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 566777777777665444 56678888888888877755 677777788888888 666777777777777888888888
Q ss_pred ccc-cccc-ccc-cccCCCCcceecceeecCCC-ccccc-cCccccCCC-CCCeEecCCC--cCCccCCCCchhhhhhcC
Q 039201 149 AEN-NFSG-TLR-SIFNISSLEFQSSETEKSKN-RFTGK-LGIDFNSLI-NLARLNLGQK--NLGIGTTSDLDFITLLRN 220 (258)
Q Consensus 149 ~~n-~l~g-~~p-~~~~l~~L~~l~l~L~l~~n-~~~g~-ip~~~~~l~-~L~~L~ls~N--~l~g~~p~~~~~~~~l~~ 220 (258)
++| .+++ .+| .+.++++|++ |++++| .+++. ++..+..++ +|++|++++| .+++. .++..+.+
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~----L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~-----~l~~~~~~ 220 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDE----LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS-----DLSTLVRR 220 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCE----EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH-----HHHHHHHH
T ss_pred CCCCCCCHHHHHHHHhcCCCCCE----EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHH-----HHHHHHhh
Confidence 888 5665 356 5677788888 777888 77654 566677777 8888888877 44421 14566667
Q ss_pred CCCCccc--cccc-cccccchhhcCCCCCCeEeccCCc
Q 039201 221 CSKLKTL--QYNQ-LTGTIPDTTGELRNLQAPDLSENN 255 (258)
Q Consensus 221 l~~L~~L--~~N~-l~g~ip~~l~~l~~L~~L~Ls~N~ 255 (258)
+++|++| ++|. +++..+..+..+++|++|++++|.
T Consensus 221 ~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 221 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 7777777 6666 666777777777788888887773
No 88
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.79 E-value=2e-18 Score=156.22 Aligned_cols=166 Identities=17% Similarity=0.186 Sum_probs=122.1
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA 149 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~ 149 (258)
+++.|+++++.+++. | .++.+++|++|++++|.+++ +| ++++++|++|+ ++|.+++ +| ++++++|++|+++
T Consensus 43 ~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 43 TLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCD 114 (457)
T ss_dssp TCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECC
T ss_pred CCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECC
Confidence 799999999999874 5 68999999999999999996 45 89999999999 8888887 44 8999999999999
Q ss_pred ccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCc---------------hh
Q 039201 150 ENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDL---------------DF 214 (258)
Q Consensus 150 ~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~---------------~~ 214 (258)
+|++++ +| ++++++|++ +++++|++++ ++ ++.+++|++|++++|...+.++... .+
T Consensus 115 ~N~l~~-l~-~~~l~~L~~----L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 115 TNKLTK-LD-VSQNPLLTY----LNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL 185 (457)
T ss_dssp SSCCSC-CC-CTTCTTCCE----EECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCC
T ss_pred CCcCCe-ec-CCCCCcCCE----EECCCCccce-ec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcccee
Confidence 999986 55 788999999 8889998886 33 6666777777777765444321000 01
Q ss_pred hhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201 215 ITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLNA 258 (258)
Q Consensus 215 ~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G 258 (258)
| ++.+++|+.| ++|++++. .++.+++|++|++++|+++|
T Consensus 186 ~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ 226 (457)
T 3bz5_A 186 D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE 226 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC
T ss_pred c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc
Confidence 1 3344444444 55555532 25556666666666666654
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=4.9e-19 Score=154.69 Aligned_cols=189 Identities=14% Similarity=0.127 Sum_probs=143.7
Q ss_pred CccccceeeCCCC---------CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCc-ccCCCCCCcEEc--
Q 039201 57 LCQWTGVTCSHRH---------PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPN-EVGCLSRLETLI-- 124 (258)
Q Consensus 57 ~c~w~gv~c~~~~---------~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~-~l~~l~~L~~L~-- 124 (258)
.|.|..|.|+... ..+++|+|++|+++...+..+.++++|++|+|++|.+.+.+|. .+.++++++++.
T Consensus 8 ~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 8 HCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp EEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred EeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 4788999997421 3689999999999854445799999999999999999877775 568899887654
Q ss_pred CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCC-CccccccCccccCCC-CCCeEecCC
Q 039201 125 GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSK-NRFTGKLGIDFNSLI-NLARLNLGQ 201 (258)
Q Consensus 125 ~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~-n~~~g~ip~~~~~l~-~L~~L~ls~ 201 (258)
..|++....|..+.++++|++|++++|++++..+ .+....++.. +++.+ +++...-+..+..+. .+++|++++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~----l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL----LDIQDNINIHTIERNSFVGLSFESVILWLNK 163 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEE----EEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhh----hhhccccccccccccchhhcchhhhhhcccc
Confidence 6688887778889999999999999999986555 6666677777 77755 455533333455554 688999999
Q ss_pred CcCCccCCCCchhhhhhcCCCCCccc---cccccccccch-hhcCCCCCCeEeccCCcCC
Q 039201 202 KNLGIGTTSDLDFITLLRNCSKLKTL---QYNQLTGTIPD-TTGELRNLQAPDLSENNLN 257 (258)
Q Consensus 202 N~l~g~~p~~~~~~~~l~~l~~L~~L---~~N~l~g~ip~-~l~~l~~L~~L~Ls~N~l~ 257 (258)
|.++. ++.......+|+.+ .+|.++ .||. .|..+++|++||+++|+|+
T Consensus 164 N~i~~-------i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 164 NGIQE-------IHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp SCCCE-------ECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC
T ss_pred ccccC-------CChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC
Confidence 99986 34444445556666 356665 6775 5688999999999999886
No 90
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=9.3e-19 Score=163.39 Aligned_cols=165 Identities=19% Similarity=0.256 Sum_probs=134.4
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA 149 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~ 149 (258)
+++.|+++++.+.. ++ .+..+++|++|+|++|.+.+ +|+ +.++++|++|+ ++|.+.+ +| .+..+++|++|+|+
T Consensus 44 ~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 44 SIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLE 117 (605)
T ss_dssp TCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECT
T ss_pred CCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEec
Confidence 68888898888864 34 58889999999999999885 444 88899999998 7777764 44 68889999999999
Q ss_pred ccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--
Q 039201 150 ENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL-- 227 (258)
Q Consensus 150 ~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L-- 227 (258)
+|.+++ +|.+..+++|+. |++++|++++. ..++.+++|+.|+|++|.+++. ++ +..+++|+.|
T Consensus 118 ~N~l~~-l~~l~~l~~L~~----L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~-------~~-l~~l~~L~~L~L 182 (605)
T 1m9s_A 118 HNGISD-INGLVHLPQLES----LYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-------VP-LAGLTKLQNLYL 182 (605)
T ss_dssp TSCCCC-CGGGGGCTTCSE----EECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC-------GG-GTTCTTCCEEEC
T ss_pred CCCCCC-CccccCCCccCE----EECCCCccCCc--hhhcccCCCCEEECcCCcCCCc-------hh-hccCCCCCEEEC
Confidence 999885 567888899999 88999998864 5688899999999999999874 23 7788888887
Q ss_pred cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201 228 QYNQLTGTIPDTTGELRNLQAPDLSENNLNA 258 (258)
Q Consensus 228 ~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G 258 (258)
++|++++ + +.+..+++|+.|+|++|++++
T Consensus 183 s~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 183 SKNHISD-L-RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CSSCCCB-C-GGGTTCTTCSEEECCSEEEEC
T ss_pred cCCCCCC-C-hHHccCCCCCEEEccCCcCcC
Confidence 8888885 4 468889999999999988753
No 91
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.78 E-value=2.4e-18 Score=149.46 Aligned_cols=150 Identities=23% Similarity=0.299 Sum_probs=105.0
Q ss_pred CCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccccccCCCCcce
Q 039201 90 VGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLRSIFNISSLEF 168 (258)
Q Consensus 90 ~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p~~~~l~~L~~ 168 (258)
+..+++|++|++++|.+.+ ++. +..+++|++|+ ++|.+.+. +. +..+++|++|++++|.+++.. .+..+++|++
T Consensus 173 ~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~-~~-~~~~~~L~~L~l~~n~l~~~~-~~~~l~~L~~ 247 (347)
T 4fmz_A 173 IANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQITDI-TP-VANMTRLNSLKIGNNKITDLS-PLANLSQLTW 247 (347)
T ss_dssp GGGCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCE
T ss_pred hccCCCCCEEEccCCcccc-ccc-ccCCCccceeecccCCCCCC-ch-hhcCCcCCEEEccCCccCCCc-chhcCCCCCE
Confidence 3444445555555544442 222 44455555555 44444432 22 667777888888888777433 3667788888
Q ss_pred ecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCCC
Q 039201 169 QSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNL 246 (258)
Q Consensus 169 l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L 246 (258)
+++++|++++ + ..+..+++|++|++++|.+++. +.+..+++|+.| ++|++++..|..+..+++|
T Consensus 248 ----L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 313 (347)
T 4fmz_A 248 ----LEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313 (347)
T ss_dssp ----EECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred ----EECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--------hhhcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence 8888888875 3 3577888888888888888762 457788888888 8999999899999999999
Q ss_pred CeEeccCCcCCC
Q 039201 247 QAPDLSENNLNA 258 (258)
Q Consensus 247 ~~L~Ls~N~l~G 258 (258)
++|++++|++++
T Consensus 314 ~~L~L~~n~l~~ 325 (347)
T 4fmz_A 314 TTLFLSQNHITD 325 (347)
T ss_dssp SEEECCSSSCCC
T ss_pred CEEEccCCcccc
Confidence 999999999875
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=1.1e-18 Score=140.24 Aligned_cols=147 Identities=18% Similarity=0.157 Sum_probs=126.6
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA 149 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~ 149 (258)
+++.++++++++. .+| .+..+++|++|++++|.++ .++.+.++++|++|+ ++|.+++..|..++.+++|++|+++
T Consensus 45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 7899999999998 566 6899999999999999665 455789999999999 8899998889999999999999999
Q ss_pred ccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc-
Q 039201 150 ENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL- 227 (258)
Q Consensus 150 ~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L- 227 (258)
+|++++..| .+..+++|++ +++++|++.+.+| .+..+++|++|++++|.+++. + .+..+++|++|
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~----L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~-------~-~l~~l~~L~~L~ 187 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNS----IDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY-------R-GIEDFPKLNQLY 187 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCE----EECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC-------T-TGGGCSSCCEEE
T ss_pred CCccCcHhHHHHhhCCCCCE----EEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh-------H-HhccCCCCCEEE
Confidence 999998788 8999999999 9999998555777 689999999999999999872 2 67888888888
Q ss_pred -ccccccc
Q 039201 228 -QYNQLTG 234 (258)
Q Consensus 228 -~~N~l~g 234 (258)
++|++.+
T Consensus 188 l~~N~i~~ 195 (197)
T 4ezg_A 188 AFSQTIGG 195 (197)
T ss_dssp ECBC----
T ss_pred eeCcccCC
Confidence 8888764
No 93
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.78 E-value=2.9e-18 Score=155.24 Aligned_cols=165 Identities=19% Similarity=0.236 Sum_probs=115.6
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA 149 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~ 149 (258)
+++.+++++|.+.+..| ++.+++|++|++++|.+++ ++ .+..+++|++|+ ++|.+.+..| +..+++|++|+++
T Consensus 200 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~ 273 (466)
T 1o6v_A 200 NLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 273 (466)
T ss_dssp TCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred CCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-ch-hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECC
Confidence 56666666666654433 5556666677777666653 32 466677777777 6666665433 6777788888888
Q ss_pred ccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--
Q 039201 150 ENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL-- 227 (258)
Q Consensus 150 ~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L-- 227 (258)
+|.+++..| +..+++|++ +++++|++.+..| ++.+++|++|++++|.+++. ++ ++.+++|+.|
T Consensus 274 ~n~l~~~~~-~~~l~~L~~----L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-------~~-~~~l~~L~~L~l 338 (466)
T 1o6v_A 274 ANQISNISP-LAGLTALTN----LELNENQLEDISP--ISNLKNLTYLTLYFNNISDI-------SP-VSSLTKLQRLFF 338 (466)
T ss_dssp SSCCCCCGG-GTTCTTCSE----EECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCC-------GG-GGGCTTCCEEEC
T ss_pred CCccCcccc-ccCCCccCe----EEcCCCcccCchh--hcCCCCCCEEECcCCcCCCc-------hh-hccCccCCEeEC
Confidence 887775433 667777888 7888888875443 67788888888888888774 22 6677777777
Q ss_pred cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201 228 QYNQLTGTIPDTTGELRNLQAPDLSENNLNA 258 (258)
Q Consensus 228 ~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G 258 (258)
++|++++. +.+..+++|+.|++++|+++|
T Consensus 339 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~ 367 (466)
T 1o6v_A 339 YNNKVSDV--SSLANLTNINWLSAGHNQISD 367 (466)
T ss_dssp CSSCCCCC--GGGTTCTTCCEEECCSSCCCB
T ss_pred CCCccCCc--hhhccCCCCCEEeCCCCccCc
Confidence 88888864 468888999999999998865
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.77 E-value=2e-20 Score=161.89 Aligned_cols=209 Identities=19% Similarity=0.124 Sum_probs=167.5
Q ss_pred hHHHHHHHHHhCCCCCCCCCCCCCCCCCccccceeeCCCCCcEEEEEcCCCCCcccCCccCCCC--CCCCEEEccCCCCc
Q 039201 30 KTDHLLAIKSQLQDPLGPTSSWKASLNLCQWTGVTCSHRHPRVTKLDLRSKSIGGFLSPFVGNP--SFVRVIVLANNSYY 107 (258)
Q Consensus 30 ~~~aL~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~lp~~~~~l--~~L~~L~Ls~n~l~ 107 (258)
..|.+..+...+.... . .....-|.+|.++.|+.. .++.++++++.+. +..+..+ +.+++|++++|.+.
T Consensus 13 P~eil~~If~~L~~~d--~--~~~~~vc~~W~~~~~~~~--~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~ 83 (336)
T 2ast_B 13 PDELLLGIFSCLCLPE--L--LKVSGVCKRWYRLASDES--LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMD 83 (336)
T ss_dssp CHHHHHHHHTTSCHHH--H--HHTTSSCHHHHHHHTCST--TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEEC
T ss_pred CHHHHHHHHHhCCHHH--H--HHHHHHHHHHHHHhcCch--hheeeccccccCC---HHHHHhhhhccceEEEcCCcccc
Confidence 3456777666552211 0 011223457999988632 5889999998876 4556666 89999999999999
Q ss_pred CCCCcccCCCCCCcEEc-CCCccCCC-CCcccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCC-ccccc
Q 039201 108 GEIPNEVGCLSRLETLI-GGYRLGGK-IPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKN-RFTGK 183 (258)
Q Consensus 108 g~~p~~l~~l~~L~~L~-~~n~l~g~-ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n-~~~g~ 183 (258)
+..+. +.++++|++|+ ++|.+.+. +|..+..+++|++|++++|.+++..| .++.+++|++ |++++| .+++.
T Consensus 84 ~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~----L~L~~~~~l~~~ 158 (336)
T 2ast_B 84 QPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR----LNLSGCSGFSEF 158 (336)
T ss_dssp SCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSE----EECTTCBSCCHH
T ss_pred ccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCE----EECCCCCCCCHH
Confidence 77665 67899999999 77888866 88889999999999999999998888 8899999999 999999 67763
Q ss_pred -cCccccCCCCCCeEecCCC-cCCccCCCCchhhhhhcCCC-CCccc--ccc--ccc-cccchhhcCCCCCCeEeccCCc
Q 039201 184 -LGIDFNSLINLARLNLGQK-NLGIGTTSDLDFITLLRNCS-KLKTL--QYN--QLT-GTIPDTTGELRNLQAPDLSENN 255 (258)
Q Consensus 184 -ip~~~~~l~~L~~L~ls~N-~l~g~~p~~~~~~~~l~~l~-~L~~L--~~N--~l~-g~ip~~l~~l~~L~~L~Ls~N~ 255 (258)
+|..+..+++|++|++++| .+++. .++..+.+++ +|++| ++| .++ +.+|..+..+++|++|++++|.
T Consensus 159 ~l~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 159 ALQTLLSSCSRLDELNLSWCFDFTEK-----HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp HHHHHHHHCTTCCEEECCCCTTCCHH-----HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred HHHHHHhcCCCCCEEcCCCCCCcChH-----HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence 7777899999999999999 88863 1467788888 99988 777 566 5788888999999999999998
Q ss_pred -CC
Q 039201 256 -LN 257 (258)
Q Consensus 256 -l~ 257 (258)
++
T Consensus 234 ~l~ 236 (336)
T 2ast_B 234 MLK 236 (336)
T ss_dssp TCC
T ss_pred cCC
Confidence 54
No 95
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=5e-20 Score=158.80 Aligned_cols=167 Identities=19% Similarity=0.184 Sum_probs=137.9
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCccc-CCCCCCCEEEc
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESL-GQLGSINYLIL 148 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~-~~l~~L~~L~L 148 (258)
.++.+++++|.+++..+. .+++|++|++++|.+++..|..++.+++|++|+ ++|.+.+..|..+ ..+++|++|++
T Consensus 100 ~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 100 SIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (317)
T ss_dssp TCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred CcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEEC
Confidence 556666666666554333 367899999999999977777888999999999 8888888777776 47999999999
Q ss_pred cccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc-
Q 039201 149 AENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL- 227 (258)
Q Consensus 149 ~~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L- 227 (258)
++|.+++. |....+++|++ +++++|++++ +|..+..+++|++|++++|.+++ +|..+..+++|+.|
T Consensus 177 ~~N~l~~~-~~~~~l~~L~~----L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-------l~~~~~~l~~L~~L~ 243 (317)
T 3o53_A 177 QYNFIYDV-KGQVVFAKLKT----LDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-------IEKALRFSQNLEHFD 243 (317)
T ss_dssp TTSCCCEE-ECCCCCTTCCE----EECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-------ECTTCCCCTTCCEEE
T ss_pred CCCcCccc-ccccccccCCE----EECCCCcCCc-chhhhcccCcccEEECcCCcccc-------hhhHhhcCCCCCEEE
Confidence 99999854 64446899999 9999999985 56669999999999999999986 45667888888888
Q ss_pred -cccccc-cccchhhcCCCCCCeEeccC
Q 039201 228 -QYNQLT-GTIPDTTGELRNLQAPDLSE 253 (258)
Q Consensus 228 -~~N~l~-g~ip~~l~~l~~L~~L~Ls~ 253 (258)
++|+++ +.+|..+..+++|+.++++.
T Consensus 244 l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 244 LRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp CTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred ccCCCccCcCHHHHHhccccceEEECCC
Confidence 899998 88899999999999988873
No 96
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.77 E-value=2.6e-18 Score=137.75 Aligned_cols=130 Identities=18% Similarity=0.206 Sum_probs=114.3
Q ss_pred EEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCc-ccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccc
Q 039201 73 TKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPN-EVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAE 150 (258)
Q Consensus 73 ~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~-~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~ 150 (258)
+.++++++++. .+|..+.. .+++|++++|.+++..+. .++++++|++|+ ++|.+++..|..+.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 35666777774 67776644 899999999999865554 488999999999 88999998899999999999999999
Q ss_pred cccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCC
Q 039201 151 NNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTT 209 (258)
Q Consensus 151 n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p 209 (258)
|++++..| .+..+++|++ |++++|++++..|..+..+++|++|++++|.+++..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~----L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKT----LNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCE----EECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCE----EECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99998888 7899999999 9999999999999999999999999999999998743
No 97
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=6.3e-19 Score=160.72 Aligned_cols=162 Identities=18% Similarity=0.090 Sum_probs=119.9
Q ss_pred cCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcccccccccccc--------
Q 039201 89 FVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLRS-------- 159 (258)
Q Consensus 89 ~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p~-------- 159 (258)
....+++|++|+|++|.+++..|..++++++|++|+ ++|.+++..| ++.+++|++|++++|.+++..+.
T Consensus 29 l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L 106 (487)
T 3oja_A 29 LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHA 106 (487)
T ss_dssp TSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEEC
T ss_pred hcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEEC
Confidence 344555899999999999987778899999999999 8888887665 89999999999999988753211
Q ss_pred ---------ccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCch-hh--------------
Q 039201 160 ---------IFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLD-FI-------------- 215 (258)
Q Consensus 160 ---------~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~-~~-------------- 215 (258)
...+++|++ |++++|.+++..|..++.+++|++|++++|.+++.+|..+. ..
T Consensus 107 ~~N~l~~~~~~~l~~L~~----L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 107 ANNNISRVSCSRGQGKKN----IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CSSCCCCEEECCCSSCEE----EECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred cCCcCCCCCccccCCCCE----EECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 112456777 99999999999999999999999999999999987543221 00
Q ss_pred --hhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201 216 --TLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLN 257 (258)
Q Consensus 216 --~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 257 (258)
+....+++|++| ++|++++ +|+.+..+++|+.|++++|+++
T Consensus 183 ~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 183 DVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV 227 (487)
T ss_dssp EEECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC
T ss_pred cccccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc
Confidence 111223444444 6666664 4445666777777777777665
No 98
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.77 E-value=1e-19 Score=164.54 Aligned_cols=165 Identities=19% Similarity=0.182 Sum_probs=92.0
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCC-------------cEEc-CCCccCCCCCcc
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRL-------------ETLI-GGYRLGGKIPES 136 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L-------------~~L~-~~n~l~g~ip~~ 136 (258)
+++.++++++++ |.+|+.++++++|++|++++|.+.|.+|..++++++| ++|+ ++|.+++ +|..
T Consensus 12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~ 89 (454)
T 1jl5_A 12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL 89 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC
T ss_pred cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC
Confidence 688888888888 7888888888888888888888888888888776654 5555 4444443 3321
Q ss_pred c-----------------CCCCCCCEEEccccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEec
Q 039201 137 L-----------------GQLGSINYLILAENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNL 199 (258)
Q Consensus 137 ~-----------------~~l~~L~~L~L~~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~l 199 (258)
. ..+++|++|++++|++++ +|.+ .++|++ +++++|++++ +| .++++++|++|++
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~-l~~~--~~~L~~----L~L~~n~l~~-lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA-LSDL--PPLLEY----LGVSNNQLEK-LP-ELQNSSFLKIIDV 160 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CCSC--CTTCCE----EECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred cCCCCEEEccCCcCCccccccCCCcEEECCCCccCc-ccCC--CCCCCE----EECcCCCCCC-Cc-ccCCCCCCCEEEC
Confidence 0 012345555555554442 2211 146777 8888888885 77 5888888999999
Q ss_pred CCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201 200 GQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLNA 258 (258)
Q Consensus 200 s~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G 258 (258)
++|.+++ +|. .+. +|++| ++|++++ +| .++.+++|++|++++|+++|
T Consensus 161 ~~N~l~~-lp~------~~~---~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~ 209 (454)
T 1jl5_A 161 DNNSLKK-LPD------LPP---SLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK 209 (454)
T ss_dssp CSSCCSC-CCC------CCT---TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS
T ss_pred CCCcCcc-cCC------Ccc---cccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc
Confidence 8888886 442 222 44444 7777775 56 57777777777777777654
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.77 E-value=2.4e-20 Score=164.89 Aligned_cols=183 Identities=22% Similarity=0.323 Sum_probs=140.9
Q ss_pred CcEEEEEcCCCCCcc----cCCccCCCCCCCCEEEccCCCCcCCCCccc----CCC---------CCCcEEc-CCCccC-
Q 039201 70 PRVTKLDLRSKSIGG----FLSPFVGNPSFVRVIVLANNSYYGEIPNEV----GCL---------SRLETLI-GGYRLG- 130 (258)
Q Consensus 70 ~~v~~l~l~~~~l~g----~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l----~~l---------~~L~~L~-~~n~l~- 130 (258)
++++.|++++|.+.+ .+|..+..+++|++|+|++|.+++..+..+ ..+ ++|++|+ ++|.++
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~ 173 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence 378888888888876 467777888888888888888864333333 333 7888888 777776
Q ss_pred CCCC---cccCCCCCCCEEEccccccc--c---ccc-cccCCCCcceecceeecCCCccc----cccCccccCCCCCCeE
Q 039201 131 GKIP---ESLGQLGSINYLILAENNFS--G---TLR-SIFNISSLEFQSSETEKSKNRFT----GKLGIDFNSLINLARL 197 (258)
Q Consensus 131 g~ip---~~~~~l~~L~~L~L~~n~l~--g---~~p-~~~~l~~L~~l~l~L~l~~n~~~----g~ip~~~~~l~~L~~L 197 (258)
+.+| ..+..+++|++|++++|+++ | .+| .+..+++|++ |++++|.++ +.+|..+..+++|++|
T Consensus 174 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~----L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKV----LDLQDNTFTHLGSSALAIALKSWPNLREL 249 (386)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCE----EECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccE----EECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence 4455 45677889999999999887 3 456 7788899999 899999986 6788888999999999
Q ss_pred ecCCCcCCccCCCCchhhhhhc--CCCCCccc--ccccccc----ccchhh-cCCCCCCeEeccCCcCCC
Q 039201 198 NLGQKNLGIGTTSDLDFITLLR--NCSKLKTL--QYNQLTG----TIPDTT-GELRNLQAPDLSENNLNA 258 (258)
Q Consensus 198 ~ls~N~l~g~~p~~~~~~~~l~--~l~~L~~L--~~N~l~g----~ip~~l-~~l~~L~~L~Ls~N~l~G 258 (258)
++++|.+++... ..++..+. ++++|++| ++|++++ .+|..+ .++++|++|++++|++++
T Consensus 250 ~L~~n~i~~~~~--~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 250 GLNDCLLSARGA--AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp ECTTCCCCHHHH--HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred ECCCCCCchhhH--HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 999999876411 01345563 38888888 8999997 588888 668999999999999875
No 100
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.77 E-value=4.2e-19 Score=149.32 Aligned_cols=141 Identities=17% Similarity=0.197 Sum_probs=71.7
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA 149 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~ 149 (258)
+++.+++++|++.. ++ .+..+++|++|++++|.+++ +|+ +.++++|++|+ ++|.+.+ +|... . ++|++|+++
T Consensus 42 ~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L~ 114 (263)
T 1xeu_A 42 GVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLFLD 114 (263)
T ss_dssp TCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEECC
T ss_pred cCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCC-cCccc-c-CcccEEEcc
Confidence 45555555555542 33 35555555555555555553 333 55555555555 4444443 33322 2 555555555
Q ss_pred ccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--
Q 039201 150 ENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL-- 227 (258)
Q Consensus 150 ~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L-- 227 (258)
+|++++ +|.+..+++|++ |++++|++++ +| .++.+++|++|++++|.+++. ..+..+++|+.|
T Consensus 115 ~N~l~~-~~~l~~l~~L~~----L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--------~~l~~l~~L~~L~l 179 (263)
T 1xeu_A 115 NNELRD-TDSLIHLKNLEI----LSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--------GGLTRLKKVNWIDL 179 (263)
T ss_dssp SSCCSB-SGGGTTCTTCCE----EECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--------TTSTTCCCCCEEEE
T ss_pred CCccCC-ChhhcCcccccE----EECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--------HHhccCCCCCEEeC
Confidence 555553 344555555555 5555555553 22 355555555555555555542 334444445444
Q ss_pred cccccc
Q 039201 228 QYNQLT 233 (258)
Q Consensus 228 ~~N~l~ 233 (258)
++|+++
T Consensus 180 ~~N~~~ 185 (263)
T 1xeu_A 180 TGQKCV 185 (263)
T ss_dssp EEEEEE
T ss_pred CCCccc
Confidence 455554
No 101
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.77 E-value=5.1e-20 Score=162.72 Aligned_cols=181 Identities=16% Similarity=0.167 Sum_probs=93.3
Q ss_pred cEEEEEcCCC---CCcccCCccC-------CCCCCCCEEEccCCCCcC----CCCcccCCCCCCcEEc-CCCccCCCCCc
Q 039201 71 RVTKLDLRSK---SIGGFLSPFV-------GNPSFVRVIVLANNSYYG----EIPNEVGCLSRLETLI-GGYRLGGKIPE 135 (258)
Q Consensus 71 ~v~~l~l~~~---~l~g~lp~~~-------~~l~~L~~L~Ls~n~l~g----~~p~~l~~l~~L~~L~-~~n~l~g~ip~ 135 (258)
+++.|+++++ .+.+.+|+.+ ..+++|++|+|++|.+.+ .+|..+.++++|++|+ ++|.+++..+.
T Consensus 61 ~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 140 (386)
T 2ca6_A 61 DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA 140 (386)
T ss_dssp TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH
T ss_pred CccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH
Confidence 4555555553 2333444322 455555555555555554 2444455555555555 44444322222
Q ss_pred c----cCCC---------CCCCEEEccccccc-cccc----cccCCCCcceecceeecCCCccc--c---ccCccccCCC
Q 039201 136 S----LGQL---------GSINYLILAENNFS-GTLR----SIFNISSLEFQSSETEKSKNRFT--G---KLGIDFNSLI 192 (258)
Q Consensus 136 ~----~~~l---------~~L~~L~L~~n~l~-g~~p----~~~~l~~L~~l~l~L~l~~n~~~--g---~ip~~~~~l~ 192 (258)
. +..+ ++|++|++++|+++ +.+| .+..+++|++ |++++|+++ | .+|..+..++
T Consensus 141 ~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~----L~L~~n~l~~~g~~~l~~~~l~~~~ 216 (386)
T 2ca6_A 141 KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT----VKMVQNGIRPEGIEHLLLEGLAYCQ 216 (386)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE----EECCSSCCCHHHHHHHHHTTGGGCT
T ss_pred HHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE----EECcCCCCCHhHHHHHHHHHhhcCC
Confidence 2 2222 55666666665554 2333 2334555666 666666655 2 2333555666
Q ss_pred CCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccc----cchhh--cCCCCCCeEeccCCcCC
Q 039201 193 NLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGT----IPDTT--GELRNLQAPDLSENNLN 257 (258)
Q Consensus 193 ~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~----ip~~l--~~l~~L~~L~Ls~N~l~ 257 (258)
+|++|++++|.++... ...+|..+..+++|++| ++|++++. +|..+ +.+++|++|+|++|+++
T Consensus 217 ~L~~L~Ls~n~l~~~g--~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 217 ELKVLDLQDNTFTHLG--SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287 (386)
T ss_dssp TCCEEECCSSCCHHHH--HHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred CccEEECcCCCCCcHH--HHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence 6666666666664100 00145556666666666 66666654 45555 33667777777777664
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=4.7e-18 Score=149.10 Aligned_cols=167 Identities=19% Similarity=0.214 Sum_probs=135.7
Q ss_pred CCccccceeeCCCC---------CcEEEEEcCCCCCcccCCccCC-CCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-
Q 039201 56 NLCQWTGVTCSHRH---------PRVTKLDLRSKSIGGFLSPFVG-NPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI- 124 (258)
Q Consensus 56 ~~c~w~gv~c~~~~---------~~v~~l~l~~~~l~g~lp~~~~-~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~- 124 (258)
..|.+..+.|.... ..++.|+|++|.+++..+..+. .+++|++|+|++|.+++..|..+.++++|++|+
T Consensus 16 C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 16 CLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp CEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 44778888887421 2588999999999987777777 999999999999999976677899999999999
Q ss_pred CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCccc----cCCCCCCeEec
Q 039201 125 GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDF----NSLINLARLNL 199 (258)
Q Consensus 125 ~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~----~~l~~L~~L~l 199 (258)
++|.+.+..+..+.++++|++|+|++|++++..| .+..+++|++ |++++|++++ +|..+ ..+++|+.|++
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~----L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L 170 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQK----LYLSQNQISR-FPVELIKDGNKLPKLMLLDL 170 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE----EECCSSCCCS-CCGGGTC----CTTCCEEEC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCE----EECCCCcCCe-eCHHHhcCcccCCcCCEEEC
Confidence 8888887667789999999999999999998778 8999999999 9999999985 56554 67999999999
Q ss_pred CCCcCCccCCCCchhhhhhcCCCCC--ccc--cccccc
Q 039201 200 GQKNLGIGTTSDLDFITLLRNCSKL--KTL--QYNQLT 233 (258)
Q Consensus 200 s~N~l~g~~p~~~~~~~~l~~l~~L--~~L--~~N~l~ 233 (258)
++|.+++. | +..+..++.+ +.| ++|.+.
T Consensus 171 ~~N~l~~l-~-----~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 171 SSNKLKKL-P-----LTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CSSCCCCC-C-----HHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCCCCcc-C-----HHHhhhccHhhcceEEecCCCcc
Confidence 99999973 2 3455555542 333 666664
No 103
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.75 E-value=1.8e-17 Score=149.80 Aligned_cols=116 Identities=20% Similarity=0.279 Sum_probs=72.1
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA 149 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~ 149 (258)
+++.+++++|.+++ +|+. +++|++|++++|.+++ +|.. .++|++|+ ++|.+++ +| +++++++|++|+++
T Consensus 92 ~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~ 161 (454)
T 1jl5_A 92 HLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVD 161 (454)
T ss_dssp TCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred CCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECC
Confidence 67777777777765 5542 3566666666666653 3321 14666666 5566664 66 46677777777777
Q ss_pred ccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCc
Q 039201 150 ENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGI 206 (258)
Q Consensus 150 ~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g 206 (258)
+|++++ +| .+ ++|++ +++++|++++ +| .++.+++|++|++++|.+++
T Consensus 162 ~N~l~~-lp~~~---~~L~~----L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~ 209 (454)
T 1jl5_A 162 NNSLKK-LPDLP---PSLEF----IAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK 209 (454)
T ss_dssp SSCCSC-CCCCC---TTCCE----EECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS
T ss_pred CCcCcc-cCCCc---ccccE----EECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc
Confidence 777664 55 22 36666 6666666664 55 46666667777776666665
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=2.7e-17 Score=140.21 Aligned_cols=162 Identities=25% Similarity=0.370 Sum_probs=134.4
Q ss_pred EEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccc
Q 039201 74 KLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENN 152 (258)
Q Consensus 74 ~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~ 152 (258)
.+.+....+.+..+ +..+++|++|++++|.+. .+|. +..+++|++|+ ++|.+++ +++ +.++++|++|++++|.
T Consensus 28 ~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~-~~~~-~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 28 KDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENK 101 (291)
T ss_dssp HHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCC-CCTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSC
T ss_pred HHHhcCCCcccccc--hhhcCcccEEEccCCCcc-cChh-HhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCc
Confidence 33455555554332 457889999999999997 4554 88999999999 7788876 444 9999999999999999
Q ss_pred cccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--ccc
Q 039201 153 FSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYN 230 (258)
Q Consensus 153 l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N 230 (258)
+++ +|.+..+++|++ |++++|++++ + +.+..+++|++|++++|.+++. +.++++++|+.| ++|
T Consensus 102 l~~-~~~l~~l~~L~~----L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--------~~l~~l~~L~~L~L~~N 166 (291)
T 1h6t_A 102 VKD-LSSLKDLKKLKS----LSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--------TVLSRLTKLDTLSLEDN 166 (291)
T ss_dssp CCC-GGGGTTCTTCCE----EECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSS
T ss_pred CCC-ChhhccCCCCCE----EECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--------hhhccCCCCCEEEccCC
Confidence 985 567889999999 9999999986 3 4689999999999999999873 568888888888 999
Q ss_pred ccccccchhhcCCCCCCeEeccCCcCCC
Q 039201 231 QLTGTIPDTTGELRNLQAPDLSENNLNA 258 (258)
Q Consensus 231 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~G 258 (258)
++++..| +..+++|+.|++++|++++
T Consensus 167 ~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 167 QISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred ccccchh--hcCCCccCEEECCCCcCCC
Confidence 9996544 8999999999999999864
No 105
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=3.5e-17 Score=131.11 Aligned_cols=128 Identities=18% Similarity=0.207 Sum_probs=96.4
Q ss_pred CEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCc-ccCCCCCCCEEEccccccccccc-cccCCCCcceeccee
Q 039201 97 RVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPE-SLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSET 173 (258)
Q Consensus 97 ~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~-~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L 173 (258)
+++++++|+++ .+|..+.. ++++|+ ++|.+.+..|. .++.+++|++|++++|++++..| .+.++++|++ |
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~----L 83 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE----L 83 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCE----E
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCE----E
Confidence 78999999985 78876644 788888 66777654443 37788888888888888887777 7888888888 8
Q ss_pred ecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccc
Q 039201 174 EKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIP 237 (258)
Q Consensus 174 ~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip 237 (258)
++++|++++..|..+..+++|++|++++|.+++.. |..+..+++|++| ++|.+++..+
T Consensus 84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM------PGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEEC------TTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeC------HHHhhcCCCCCEEEeCCCCccCcCc
Confidence 88888888777777888888888888888887753 3455566666665 6777766554
No 106
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=6.3e-21 Score=176.87 Aligned_cols=103 Identities=20% Similarity=0.177 Sum_probs=86.2
Q ss_pred CCCEEEccccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCC
Q 039201 142 SINYLILAENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNC 221 (258)
Q Consensus 142 ~L~~L~L~~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l 221 (258)
.|++|++++|.+++ +|.++.+++|++ |++++|+++ .+|..++.+++|++|++++|.+++ +| .++++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~~~~l~~L~~----L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-------lp-~l~~l 507 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCHLEQLLLVTH----LDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-------VD-GVANL 507 (567)
T ss_dssp TCSEEECTTSCCSS-CCCGGGGTTCCE----EECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-------CG-GGTTC
T ss_pred CceEEEecCCCCCC-CcCccccccCcE----eecCccccc-ccchhhhcCCCCCEEECCCCCCCC-------Cc-ccCCC
Confidence 57888888888885 677888888888 888888888 888888888899999999998887 34 67888
Q ss_pred CCCccc--ccccccccc-chhhcCCCCCCeEeccCCcCCC
Q 039201 222 SKLKTL--QYNQLTGTI-PDTTGELRNLQAPDLSENNLNA 258 (258)
Q Consensus 222 ~~L~~L--~~N~l~g~i-p~~l~~l~~L~~L~Ls~N~l~G 258 (258)
++|+.| ++|++++.+ |..++.+++|+.|+|++|+++|
T Consensus 508 ~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 508 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp SSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred CCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 888887 888888776 8888888899999999888864
No 107
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.72 E-value=7.1e-19 Score=154.30 Aligned_cols=182 Identities=21% Similarity=0.190 Sum_probs=141.5
Q ss_pred cEEEEEcCCCCCcccCC----ccCCCCC-CCCEEEccCCCCcCCCCcccCCC-----CCCcEEc-CCCccCCCCCcccC-
Q 039201 71 RVTKLDLRSKSIGGFLS----PFVGNPS-FVRVIVLANNSYYGEIPNEVGCL-----SRLETLI-GGYRLGGKIPESLG- 138 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp----~~~~~l~-~L~~L~Ls~n~l~g~~p~~l~~l-----~~L~~L~-~~n~l~g~ip~~~~- 138 (258)
+++.|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|++|+ ++|.+++..+..++
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 59999999999987665 6777888 89999999999998777777664 9999999 88888877776544
Q ss_pred ---CC-CCCCEEEccccccccccc-ccc----C-CCCcceecceeecCCCcccc----ccCccccCCC-CCCeEecCCCc
Q 039201 139 ---QL-GSINYLILAENNFSGTLR-SIF----N-ISSLEFQSSETEKSKNRFTG----KLGIDFNSLI-NLARLNLGQKN 203 (258)
Q Consensus 139 ---~l-~~L~~L~L~~n~l~g~~p-~~~----~-l~~L~~l~l~L~l~~n~~~g----~ip~~~~~l~-~L~~L~ls~N~ 203 (258)
.+ ++|++|++++|++++..+ .+. . .++|++ |++++|++++ .++..+..++ +|++|++++|.
T Consensus 103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~----L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS----LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCE----EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeE----EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence 44 899999999999986555 433 3 368999 9999999985 3444556665 99999999999
Q ss_pred CCccCCCCchhhhhhcCC-CCCccc--cccccccc----cchhhcCC-CCCCeEeccCCcCCC
Q 039201 204 LGIGTTSDLDFITLLRNC-SKLKTL--QYNQLTGT----IPDTTGEL-RNLQAPDLSENNLNA 258 (258)
Q Consensus 204 l~g~~p~~~~~~~~l~~l-~~L~~L--~~N~l~g~----ip~~l~~l-~~L~~L~Ls~N~l~G 258 (258)
+++..+.. +...+..+ ++|++| ++|++++. ++..+... ++|++|+|++|++++
T Consensus 179 l~~~~~~~--l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 179 LASKNCAE--LAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp GGGSCHHH--HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred CchhhHHH--HHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 98753211 22345555 588887 89999863 66667664 599999999999864
No 108
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.72 E-value=6.8e-19 Score=154.40 Aligned_cols=181 Identities=20% Similarity=0.191 Sum_probs=138.1
Q ss_pred cEEEEEcCCCCCcccCCccCCCC-----CCCCEEEccCCCCcCCCCcccC----CC-CCCcEEc-CCCccCCCCCccc--
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNP-----SFVRVIVLANNSYYGEIPNEVG----CL-SRLETLI-GGYRLGGKIPESL-- 137 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l-----~~L~~L~Ls~n~l~g~~p~~l~----~l-~~L~~L~-~~n~l~g~ip~~~-- 137 (258)
+++.|++++|.+++..+..+..+ ++|++|++++|.+++..+..+. .+ ++|++|+ ++|.+++..+..+
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 79999999999988767666664 9999999999999877666444 44 8999999 8888877665544
Q ss_pred --CC-CCCCCEEEccccccccc----cc-cccCCC-CcceecceeecCCCccccccCcccc----CC-CCCCeEecCCCc
Q 039201 138 --GQ-LGSINYLILAENNFSGT----LR-SIFNIS-SLEFQSSETEKSKNRFTGKLGIDFN----SL-INLARLNLGQKN 203 (258)
Q Consensus 138 --~~-l~~L~~L~L~~n~l~g~----~p-~~~~l~-~L~~l~l~L~l~~n~~~g~ip~~~~----~l-~~L~~L~ls~N~ 203 (258)
.. .++|++|++++|.+++. ++ .+..++ +|++ |++++|++++..+..++ .. ++|++|++++|.
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~----L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 207 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS----LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL 207 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCE----EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccE----eeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC
Confidence 34 36999999999999853 33 445565 8999 99999999877765544 44 699999999999
Q ss_pred CCccCCCCchhhhhhcC-CCCCccc--cccccccccc----hhhcCCCCCCeEeccCCcCC
Q 039201 204 LGIGTTSDLDFITLLRN-CSKLKTL--QYNQLTGTIP----DTTGELRNLQAPDLSENNLN 257 (258)
Q Consensus 204 l~g~~p~~~~~~~~l~~-l~~L~~L--~~N~l~g~ip----~~l~~l~~L~~L~Ls~N~l~ 257 (258)
+++... ..++..+.. .++|++| ++|++++..+ ..+..+++|++|++++|+++
T Consensus 208 i~~~~~--~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~ 266 (362)
T 3goz_A 208 LGLKSY--AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVK 266 (362)
T ss_dssp GGGSCH--HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHT
T ss_pred CChhHH--HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCcc
Confidence 987421 114555655 3478877 8999987544 33567799999999999843
No 109
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=1e-18 Score=166.54 Aligned_cols=178 Identities=22% Similarity=0.226 Sum_probs=122.8
Q ss_pred CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEc
Q 039201 70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLIL 148 (258)
Q Consensus 70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L 148 (258)
..++.|+|++|.+. .+|+.+..+++|++|+|++|.++ .+|..++++++|++|+ ++|.++ .+|..+++|++|++|+|
T Consensus 224 ~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 300 (727)
T 4b8c_D 224 QLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYF 300 (727)
T ss_dssp CCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEEC
T ss_pred CCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEEC
Confidence 47999999999997 78888889999999999999999 8999999999999999 888888 89999999999999999
Q ss_pred cccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCC-CCeEecCCCcCCccCCCCchhhhhhcCCCCCcc
Q 039201 149 AENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLIN-LARLNLGQKNLGIGTTSDLDFITLLRNCSKLKT 226 (258)
Q Consensus 149 ~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~-L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~ 226 (258)
++|.++ .+| .++++++|++ |++++|.+++.+|..+..+.. +..+++++|.++|.+|..+.....-.+....
T Consensus 301 ~~N~l~-~lp~~~~~l~~L~~----L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~l~l~~n~~~~-- 373 (727)
T 4b8c_D 301 FDNMVT-TLPWEFGNLCNLQF----LGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRFIEINTDGEPQ-- 373 (727)
T ss_dssp CSSCCC-CCCSSTTSCTTCCC----EECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------
T ss_pred CCCCCC-ccChhhhcCCCccE----EeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccceeEeecccccc--
Confidence 999997 889 9999999999 999999999999988866532 3457899999999876544332211110000
Q ss_pred ccccccccccchhhcCCCCCCeEeccCCcCC
Q 039201 227 LQYNQLTGTIPDTTGELRNLQAPDLSENNLN 257 (258)
Q Consensus 227 L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 257 (258)
...+.+.+.++..+..+.+++...+++|-+.
T Consensus 374 ~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 374 REYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ----------------------------CCC
T ss_pred cccCCccccccchhhcccccceeeeeccccc
Confidence 0223455555556667777777888888764
No 110
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.71 E-value=1.7e-17 Score=155.25 Aligned_cols=137 Identities=18% Similarity=0.201 Sum_probs=100.5
Q ss_pred CCCCCCCCCCccccceee------CCCCCcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCc
Q 039201 48 TSSWKASLNLCQWTGVTC------SHRHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLE 121 (258)
Q Consensus 48 ~~~w~~~~~~c~w~gv~c------~~~~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~ 121 (258)
...|....++|.|+|..| ......++.+++++++++ .+|..+. ++|++|++++|.++ .+|. .+++|+
T Consensus 12 w~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~ 84 (622)
T 3g06_A 12 WSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELR 84 (622)
T ss_dssp HHHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCC
T ss_pred HHHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCC
Confidence 345766678899966422 111125889999999987 6777665 78999999999988 5776 578899
Q ss_pred EEc-CCCccCCCCCcccCCCCCCCEEEccccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecC
Q 039201 122 TLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLG 200 (258)
Q Consensus 122 ~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls 200 (258)
+|+ ++|.++ .+|. .+++|++|++++|++++ +|. .+++|+. |++++|++++ +|.. +++|++|+++
T Consensus 85 ~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~--~l~~L~~----L~L~~N~l~~-lp~~---l~~L~~L~Ls 149 (622)
T 3g06_A 85 TLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA--LPSGLCK----LWIFGNQLTS-LPVL---PPGLQELSVS 149 (622)
T ss_dssp EEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC--CCTTCCE----EECCSSCCSC-CCCC---CTTCCEEECC
T ss_pred EEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC--CCCCcCE----EECCCCCCCc-CCCC---CCCCCEEECc
Confidence 998 777776 5776 67889999999988874 453 4567777 7778887774 6653 3677888888
Q ss_pred CCcCCc
Q 039201 201 QKNLGI 206 (258)
Q Consensus 201 ~N~l~g 206 (258)
+|.+++
T Consensus 150 ~N~l~~ 155 (622)
T 3g06_A 150 DNQLAS 155 (622)
T ss_dssp SSCCSC
T ss_pred CCcCCC
Confidence 887775
No 111
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.71 E-value=1.1e-17 Score=128.27 Aligned_cols=124 Identities=16% Similarity=0.110 Sum_probs=67.3
Q ss_pred cEEEEEcCCCCCc-ccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEc
Q 039201 71 RVTKLDLRSKSIG-GFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLIL 148 (258)
Q Consensus 71 ~v~~l~l~~~~l~-g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L 148 (258)
+++.+++++|++. +.+|+.+..+++|++|++++|.+++. ..++++++|++|+ ++|.+++.+|..+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 5666666666665 55666666666666666666666543 3455555555555 455555445554445555555555
Q ss_pred cccccccc-cc-cccCCCCcceecceeecCCCccccccC---ccccCCCCCCeEecC
Q 039201 149 AENNFSGT-LR-SIFNISSLEFQSSETEKSKNRFTGKLG---IDFNSLINLARLNLG 200 (258)
Q Consensus 149 ~~n~l~g~-~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip---~~~~~l~~L~~L~ls 200 (258)
++|.+++. .| .+..+++|++ +++++|++++..+ ..++.+++|++|+++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~----L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKS----LDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCE----EECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCcCCChHHHHHHhhCCCCCE----EeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 55555542 22 4455555555 5555555553333 244555555555543
No 112
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.70 E-value=2.1e-16 Score=124.62 Aligned_cols=134 Identities=17% Similarity=0.186 Sum_probs=107.5
Q ss_pred CCccccceeeCCCCCcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCC
Q 039201 56 NLCQWTGVTCSHRHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIP 134 (258)
Q Consensus 56 ~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip 134 (258)
..|.|.++.|. ++++. .+|..+ .++|++|++++|.+++..+..+.++++|++|+ ++|.+++..+
T Consensus 5 C~C~~~~l~~~------------~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 69 (177)
T 2o6r_A 5 CSCSGTEIRCN------------SKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD 69 (177)
T ss_dssp CEEETTEEECC------------SSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT
T ss_pred CEeCCCEEEec------------CCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeCh
Confidence 34677777765 34444 345433 36899999999999865556678999999999 7788886555
Q ss_pred cccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccC
Q 039201 135 ESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGT 208 (258)
Q Consensus 135 ~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~ 208 (258)
..+.++++|++|++++|++++..+ .+.++++|++ +++++|++++..+..+..+++|++|++++|.+++..
T Consensus 70 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~----L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 70 GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKE----LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE----EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred hHccCCCccCEEECCCCCccccCHHHhhCCcccCE----EECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 667999999999999999997666 6789999999 999999999655555688999999999999999863
No 113
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.70 E-value=2.3e-17 Score=129.06 Aligned_cols=130 Identities=16% Similarity=0.115 Sum_probs=83.4
Q ss_pred cEEEEEcCCCCCc-ccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEc
Q 039201 71 RVTKLDLRSKSIG-GFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLIL 148 (258)
Q Consensus 71 ~v~~l~l~~~~l~-g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L 148 (258)
+++.|++++|++. +.+|..+..+++|++|++++|.+++. ..+..+++|++|+ ++|.+.+.+|..+.++++|++|++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 5777777777776 66676667777777777777777643 4566666666666 666666656665556666666666
Q ss_pred ccccccccc--ccccCCCCcceecceeecCCCccccccC---ccccCCCCCCeEecCCCcCCc
Q 039201 149 AENNFSGTL--RSIFNISSLEFQSSETEKSKNRFTGKLG---IDFNSLINLARLNLGQKNLGI 206 (258)
Q Consensus 149 ~~n~l~g~~--p~~~~l~~L~~l~l~L~l~~n~~~g~ip---~~~~~l~~L~~L~ls~N~l~g 206 (258)
++|.+++.. +.+..+++|++ +++++|.+++..+ ..+..+++|++|++++|.+..
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~----L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKS----LDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCE----EECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred cCCccCcchhHHHHhcCCCCCE----EEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 666666522 25566666666 6666666664333 256666666666666666543
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=5.7e-17 Score=151.34 Aligned_cols=164 Identities=24% Similarity=0.348 Sum_probs=137.4
Q ss_pred EEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccc
Q 039201 72 VTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAE 150 (258)
Q Consensus 72 v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~ 150 (258)
+..+.+..+.+.+.++ +..+.+|++|++++|.+. .+| .+..+++|++|+ ++|.+.+. |+ +..+++|++|+|++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDI-KP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCC-GG-GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCC-hh-hccCCCCCEEECcC
Confidence 3444555666654433 467889999999999997 455 589999999999 77888764 44 89999999999999
Q ss_pred cccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--c
Q 039201 151 NNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--Q 228 (258)
Q Consensus 151 n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~ 228 (258)
|.+++ +|.+..+++|++ |++++|++.+ + +.+..+++|+.|++++|.+++. +.+..+++|+.| +
T Consensus 97 N~l~~-l~~l~~l~~L~~----L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--------~~l~~l~~L~~L~Ls 161 (605)
T 1m9s_A 97 NKIKD-LSSLKDLKKLKS----LSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--------TVLSRLTKLDTLSLE 161 (605)
T ss_dssp SCCCC-CTTSTTCTTCCE----EECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--------GGGGSCTTCSEEECC
T ss_pred CCCCC-ChhhccCCCCCE----EEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--------hhhcccCCCCEEECc
Confidence 99984 568889999999 9999999985 4 4589999999999999999873 578888999988 9
Q ss_pred ccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201 229 YNQLTGTIPDTTGELRNLQAPDLSENNLNA 258 (258)
Q Consensus 229 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G 258 (258)
+|++++..| +..+++|+.|+|++|++++
T Consensus 162 ~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 162 DNQISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp SSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred CCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence 999997666 8999999999999999874
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.70 E-value=5.7e-17 Score=126.74 Aligned_cols=134 Identities=22% Similarity=0.145 Sum_probs=94.4
Q ss_pred CCCCCCCEEEccCCCCc-CCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcc
Q 039201 91 GNPSFVRVIVLANNSYY-GEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLE 167 (258)
Q Consensus 91 ~~l~~L~~L~Ls~n~l~-g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~ 167 (258)
...++|++|++++|.++ |.+|..+.++++|++|+ ++|.+.+. ..+..+++|++|++++|++++.+| .+.++++|+
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 44578999999999987 78888778888888888 66776654 667788888888888888887677 566678888
Q ss_pred eecceeecCCCccccc-cCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccc
Q 039201 168 FQSSETEKSKNRFTGK-LGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLT 233 (258)
Q Consensus 168 ~l~l~L~l~~n~~~g~-ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~ 233 (258)
+ |++++|++++. .+..+..+++|++|++++|.+++..+. ....+..+++|++| ++|.+.
T Consensus 99 ~----L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~---~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 99 H----LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDY---RESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp E----EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTH---HHHHHTTCSSCCEETTEETTSC
T ss_pred E----EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHH---HHHHHHhCccCcEecCCCCChh
Confidence 8 78888887753 225677788888888888877763100 00245555555555 445444
No 116
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.69 E-value=2.3e-16 Score=147.57 Aligned_cols=163 Identities=23% Similarity=0.241 Sum_probs=93.6
Q ss_pred CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccC-----------------CCCCCcEEc-CCCccCC
Q 039201 70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVG-----------------CLSRLETLI-GGYRLGG 131 (258)
Q Consensus 70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~-----------------~l~~L~~L~-~~n~l~g 131 (258)
++++.|++++|.+++ +|. .+++|++|++++|.+++ +|..+. .+++|++|+ ++|.+++
T Consensus 81 ~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~ 155 (622)
T 3g06_A 81 PELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS 155 (622)
T ss_dssp TTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC
T ss_pred CCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCCCCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCC
Confidence 367778888877763 554 55666666666666653 333110 114444444 4444432
Q ss_pred CCCc---ccCCC--------------CCCCEEEccccccccccc-cccC-----------------CCCcceecceeecC
Q 039201 132 KIPE---SLGQL--------------GSINYLILAENNFSGTLR-SIFN-----------------ISSLEFQSSETEKS 176 (258)
Q Consensus 132 ~ip~---~~~~l--------------~~L~~L~L~~n~l~g~~p-~~~~-----------------l~~L~~l~l~L~l~ 176 (258)
+|. .+..+ ++|++|++++|++++ +| .+.+ +++|++ |+++
T Consensus 156 -l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~----L~Ls 229 (622)
T 3g06_A 156 -LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKE----LIVS 229 (622)
T ss_dssp -CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCE----EECC
T ss_pred -cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCCCCCCCCE----EEcc
Confidence 222 11111 555555555555553 22 1111 133444 5555
Q ss_pred CCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCC
Q 039201 177 KNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSEN 254 (258)
Q Consensus 177 ~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N 254 (258)
+|++++ +| ..+++|++|++++|.++. + |. .+++|+.| ++|+++ .+|..+.++++|+.|+|++|
T Consensus 230 ~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-l------p~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 230 GNRLTS-LP---VLPSELKELMVSGNRLTS-L------PM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp SSCCSC-CC---CCCTTCCEEECCSSCCSC-C------CC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSC
T ss_pred CCccCc-CC---CCCCcCcEEECCCCCCCc-C------Cc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCC
Confidence 555553 44 334556666666666653 2 22 34456666 899999 89999999999999999999
Q ss_pred cCCC
Q 039201 255 NLNA 258 (258)
Q Consensus 255 ~l~G 258 (258)
+++|
T Consensus 295 ~l~~ 298 (622)
T 3g06_A 295 PLSE 298 (622)
T ss_dssp CCCH
T ss_pred CCCC
Confidence 9875
No 117
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.69 E-value=8.4e-17 Score=123.29 Aligned_cols=109 Identities=25% Similarity=0.226 Sum_probs=72.1
Q ss_pred CCCCCCEEEccCCCCc-CCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcce
Q 039201 92 NPSFVRVIVLANNSYY-GEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEF 168 (258)
Q Consensus 92 ~l~~L~~L~Ls~n~l~-g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~ 168 (258)
..++|++|++++|.++ +.+|..+..+++|++|+ ++|.+++. ..++++++|++|++++|.+++.+| .+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 4467888888888887 67777667777777776 55555543 556666667777777776666566 5555666666
Q ss_pred ecceeecCCCccccc-cCccccCCCCCCeEecCCCcCCc
Q 039201 169 QSSETEKSKNRFTGK-LGIDFNSLINLARLNLGQKNLGI 206 (258)
Q Consensus 169 l~l~L~l~~n~~~g~-ip~~~~~l~~L~~L~ls~N~l~g 206 (258)
+++++|++++. .|..++.+++|++|++++|.+++
T Consensus 93 ----L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 93 ----LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp ----EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred ----EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence 66666666642 33556666666666666666654
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.68 E-value=1.4e-16 Score=147.50 Aligned_cols=145 Identities=17% Similarity=0.163 Sum_probs=113.6
Q ss_pred CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEc
Q 039201 70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLIL 148 (258)
Q Consensus 70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L 148 (258)
++++.|++++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|++|+ ++|.+++ +|. .+++|++|++
T Consensus 100 ~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 167 (571)
T 3cvr_A 100 ASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSV 167 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred CCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEEC
Confidence 367777777777766 665 544 77778888877775 666 577888888 7777775 776 5789999999
Q ss_pred cccccccccccccCCCCcceecceeecCCCccccccCccccCCCCC-------CeEecCCCcCCccCCCCchhhhhhcCC
Q 039201 149 AENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINL-------ARLNLGQKNLGIGTTSDLDFITLLRNC 221 (258)
Q Consensus 149 ~~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L-------~~L~ls~N~l~g~~p~~~~~~~~l~~l 221 (258)
++|++++ +|.+. ++|++ |++++|+++ .+|. +.. +| +.|++++|.++. +|..+.++
T Consensus 168 s~N~L~~-lp~l~--~~L~~----L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-------lp~~l~~l 229 (571)
T 3cvr_A 168 RNNQLTF-LPELP--ESLEA----LDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITH-------IPENILSL 229 (571)
T ss_dssp CSSCCSC-CCCCC--TTCCE----EECCSSCCS-SCCC-CC----------CCEEEECCSSCCCC-------CCGGGGGS
T ss_pred CCCCCCC-cchhh--CCCCE----EECcCCCCC-chhh-HHH--hhhcccccceEEecCCCccee-------cCHHHhcC
Confidence 9999986 77644 89999 999999998 7887 654 77 999999999985 56778888
Q ss_pred CCCccc--cccccccccchhhcCCC
Q 039201 222 SKLKTL--QYNQLTGTIPDTTGELR 244 (258)
Q Consensus 222 ~~L~~L--~~N~l~g~ip~~l~~l~ 244 (258)
++|+.| ++|+++|.+|..+..+.
T Consensus 230 ~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 230 DPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred CCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 888888 99999999999887653
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.67 E-value=7.3e-16 Score=123.59 Aligned_cols=126 Identities=19% Similarity=0.206 Sum_probs=109.4
Q ss_pred EEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccc
Q 039201 74 KLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENN 152 (258)
Q Consensus 74 ~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~ 152 (258)
.++++++++. .+|..+. +.|++|++++|.++ .+|..+.++++|++|+ ++|.+++..|..+.++++|++|+|++|+
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4666677776 5676543 68999999999998 7899999999999999 8889988777889999999999999999
Q ss_pred cccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCcc
Q 039201 153 FSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIG 207 (258)
Q Consensus 153 l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~ 207 (258)
+++..| .+..+++|++ |++++|++++..+..+..+++|+.|++++|.+...
T Consensus 90 l~~i~~~~f~~l~~L~~----L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRL----LSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CCBCCTTTTTTCTTCCE----EECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred cCEeCHHHhCCCCCCCE----EECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 998777 8999999999 99999999965555688999999999999998754
No 120
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.67 E-value=1.9e-18 Score=155.58 Aligned_cols=177 Identities=22% Similarity=0.154 Sum_probs=113.2
Q ss_pred cEEEEEcCCCCCccc----CCccCCCCCCCCEEEccCCCCcCCC-----CcccCCCCCCcEEc-CCCccCCC----CCcc
Q 039201 71 RVTKLDLRSKSIGGF----LSPFVGNPSFVRVIVLANNSYYGEI-----PNEVGCLSRLETLI-GGYRLGGK----IPES 136 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~----lp~~~~~l~~L~~L~Ls~n~l~g~~-----p~~l~~l~~L~~L~-~~n~l~g~----ip~~ 136 (258)
+++.|++++|.+++. ++..+..+++|++|++++|.+.+.- +.....+++|++|+ ++|.+++. +|..
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 279 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence 455555555555442 3444555566666666666554321 11122456666666 55555543 4555
Q ss_pred cCCCCCCCEEEccccccccccc-ccc-----CCCCcceecceeecCCCccccc----cCccccCCCCCCeEecCCCcCCc
Q 039201 137 LGQLGSINYLILAENNFSGTLR-SIF-----NISSLEFQSSETEKSKNRFTGK----LGIDFNSLINLARLNLGQKNLGI 206 (258)
Q Consensus 137 ~~~l~~L~~L~L~~n~l~g~~p-~~~-----~l~~L~~l~l~L~l~~n~~~g~----ip~~~~~l~~L~~L~ls~N~l~g 206 (258)
+.++++|++|++++|.+++..+ .+. ..++|++ +++++|.+++. +|..+..+++|++|++++|.+++
T Consensus 280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~----L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 355 (461)
T 1z7x_W 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES----LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED 355 (461)
T ss_dssp HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCE----EECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH
T ss_pred HhhCCCcceEECCCCCCchHHHHHHHHHhccCCcccee----eEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc
Confidence 5667777777777777654332 222 2257777 77788887755 56667777888888888888876
Q ss_pred cCCCCchhhhhhcC-----CCCCccc--ccccccc----ccchhhcCCCCCCeEeccCCcCC
Q 039201 207 GTTSDLDFITLLRN-----CSKLKTL--QYNQLTG----TIPDTTGELRNLQAPDLSENNLN 257 (258)
Q Consensus 207 ~~p~~~~~~~~l~~-----l~~L~~L--~~N~l~g----~ip~~l~~l~~L~~L~Ls~N~l~ 257 (258)
. .+..+.. .+.|++| ++|++++ .+|..+..+++|++|++++|+++
T Consensus 356 ~------~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 356 A------GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp H------HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred c------cHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 4 2233322 5677777 8899986 78888888999999999999886
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=8.7e-16 Score=128.97 Aligned_cols=163 Identities=20% Similarity=0.196 Sum_probs=111.1
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA 149 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~ 149 (258)
+++.++++++.+++. + .+..+++|++|++++|.++ .+| .+..+++|++|+ ++|.+++ +|+ +.++++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECC
Confidence 344555666666543 2 4567777778888877776 455 567777777777 6666664 444 7777788888888
Q ss_pred ccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--
Q 039201 150 ENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL-- 227 (258)
Q Consensus 150 ~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L-- 227 (258)
+|++++ +|.+.. ++|++ |++++|++++ +| .++.+++|++|++++|.+++. +.++.+++|+.|
T Consensus 94 ~N~l~~-l~~~~~-~~L~~----L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~--------~~l~~l~~L~~L~L 157 (263)
T 1xeu_A 94 RNRLKN-LNGIPS-ACLSR----LFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI--------VMLGFLSKLEVLDL 157 (263)
T ss_dssp SSCCSC-CTTCCC-SSCCE----EECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC--------GGGGGCTTCCEEEC
T ss_pred CCccCC-cCcccc-CcccE----EEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC--------hHHccCCCCCEEEC
Confidence 887774 442233 77777 7777777775 33 477777788888888877762 256667777766
Q ss_pred cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201 228 QYNQLTGTIPDTTGELRNLQAPDLSENNLN 257 (258)
Q Consensus 228 ~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 257 (258)
++|++++. ..+..+++|+.|++++|+++
T Consensus 158 ~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 158 HGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp TTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred CCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 77777754 56777777888888777764
No 122
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.64 E-value=2.5e-18 Score=138.37 Aligned_cols=155 Identities=18% Similarity=0.198 Sum_probs=91.4
Q ss_pred cEEEEEcCCCCCcccCCc------cCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCC
Q 039201 71 RVTKLDLRSKSIGGFLSP------FVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSI 143 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~------~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L 143 (258)
+++.++++.+.+.|.+|. .+..+++|++|++++|.+++ +| .+.++++|++|+ ++|.+. .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 455555666666665554 66677777777777777764 55 566666777776 555555 566655566667
Q ss_pred CEEEccccccccccccccCCCCcceecceeecCCCccccccC-ccccCCCCCCeEecCCCcCCccCCCC---ch-hhhhh
Q 039201 144 NYLILAENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLG-IDFNSLINLARLNLGQKNLGIGTTSD---LD-FITLL 218 (258)
Q Consensus 144 ~~L~L~~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip-~~~~~l~~L~~L~ls~N~l~g~~p~~---~~-~~~~l 218 (258)
++|++++|++++ +|.+..+++|++ +++++|++++.-+ ..+..+++|++|++++|.+++.+|.. -. ....+
T Consensus 96 ~~L~L~~N~l~~-l~~~~~l~~L~~----L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 96 EELWISYNQIAS-LSGIEKLVNLRV----LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp SEEEEEEEECCC-HHHHHHHHHSSE----EEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred CEEECcCCcCCc-CCccccCCCCCE----EECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence 777777776664 445556666666 6666666653211 34666666777777776666543221 00 01124
Q ss_pred cCCCCCccccccccc
Q 039201 219 RNCSKLKTLQYNQLT 233 (258)
Q Consensus 219 ~~l~~L~~L~~N~l~ 233 (258)
..+++|+.|++|.++
T Consensus 171 ~~l~~L~~Ld~~~i~ 185 (198)
T 1ds9_A 171 KRLPNLKKLDGMPVD 185 (198)
T ss_dssp HHCSSCSEECCGGGT
T ss_pred HhCCCcEEECCcccC
Confidence 555555555555444
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=2.3e-15 Score=120.63 Aligned_cols=124 Identities=21% Similarity=0.243 Sum_probs=95.2
Q ss_pred CEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecceee
Q 039201 97 RVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETE 174 (258)
Q Consensus 97 ~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~ 174 (258)
+++++++|.++ .+|..+. ++|++|+ ++|.++ .+|..+.++++|++|++++|++++..| .+.++++|++ |+
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~----L~ 84 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLT----LI 84 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCE----EE
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCE----EE
Confidence 57899999987 7887653 5788888 666666 788888888899999999998887666 7888888888 88
Q ss_pred cCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--ccccccc
Q 039201 175 KSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTG 234 (258)
Q Consensus 175 l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g 234 (258)
+++|++++..|..+..+++|++|++++|.+++. | +..+..+++|+.| ++|.+..
T Consensus 85 Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~-~-----~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 85 LSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVV-P-----EGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBC-C-----TTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCccCEeCHHHhCCCCCCCEEECCCCCCCee-C-----hhhhhcCccccEEEeCCCCeec
Confidence 889988877777788888889998888888763 1 2235555666655 6666653
No 124
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.64 E-value=4.8e-15 Score=116.77 Aligned_cols=129 Identities=16% Similarity=0.165 Sum_probs=97.7
Q ss_pred CCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceeccee
Q 039201 96 VRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSET 173 (258)
Q Consensus 96 L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L 173 (258)
.+.+++++|+++ .+|..+ .++|++|+ ++|.+.+..+..+.++++|++|++++|++++..+ .+..+++|++ +
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~----L 81 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTI----L 81 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE----E
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCE----E
Confidence 478899999887 577544 36888888 7777776555667888999999999999885555 5788889999 8
Q ss_pred ecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccc
Q 039201 174 EKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIP 237 (258)
Q Consensus 174 ~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip 237 (258)
++++|++++..+..+..+++|++|++++|.+++. | +..+.++++|++| ++|++++..|
T Consensus 82 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~-----~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 82 YLHENKLQSLPNGVFDKLTQLKELALDTNQLKSV-P-----DGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-C-----TTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ECCCCCccccCHHHhhCCcccCEEECcCCcceEe-C-----HHHhcCCcccCEEEecCCCeeccCc
Confidence 8899998876666678888999999999988863 2 2234566666666 7777776554
No 125
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.62 E-value=1.6e-17 Score=149.46 Aligned_cols=180 Identities=21% Similarity=0.190 Sum_probs=116.0
Q ss_pred cEEEEEcCCCCCcc----cCCccCCCCCCCCEEEccCCCCcCCCCcccC-----CCCCCcEEc-CCCccCCC----CCcc
Q 039201 71 RVTKLDLRSKSIGG----FLSPFVGNPSFVRVIVLANNSYYGEIPNEVG-----CLSRLETLI-GGYRLGGK----IPES 136 (258)
Q Consensus 71 ~v~~l~l~~~~l~g----~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~-----~l~~L~~L~-~~n~l~g~----ip~~ 136 (258)
++++|++++|.++. .++..+..+++|++|++++|.+++..+..+. ..++|++|+ ++|.+++. ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 58888888888873 5677888888888888888887654333222 356788888 66776653 3455
Q ss_pred cCCCCCCCEEEccccccccccc-ccc-----CCCCcceecceeecCCCccccc----cCccccCCCCCCeEecCCCcCCc
Q 039201 137 LGQLGSINYLILAENNFSGTLR-SIF-----NISSLEFQSSETEKSKNRFTGK----LGIDFNSLINLARLNLGQKNLGI 206 (258)
Q Consensus 137 ~~~l~~L~~L~L~~n~l~g~~p-~~~-----~l~~L~~l~l~L~l~~n~~~g~----ip~~~~~l~~L~~L~ls~N~l~g 206 (258)
+..+++|++|++++|.++...+ .+. ..++|++ +++++|++++. ++..+..+++|++|++++|.+++
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~----L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEA----LKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCE----EECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceE----EEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 6667888888888888765433 332 2557777 77788877653 56667777788888888877765
Q ss_pred cCCCCchh-hhhhcCCCCCccc--cccccccc----cchhhcCCCCCCeEeccCCcC
Q 039201 207 GTTSDLDF-ITLLRNCSKLKTL--QYNQLTGT----IPDTTGELRNLQAPDLSENNL 256 (258)
Q Consensus 207 ~~p~~~~~-~~~l~~l~~L~~L--~~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l 256 (258)
.... .+ +.....+++|++| ++|++++. ++..+..+++|++|++++|++
T Consensus 242 ~~~~--~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 242 VGMA--ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296 (461)
T ss_dssp HHHH--HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred HHHH--HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence 2100 00 1111234555555 56666643 555555566666666666655
No 126
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.61 E-value=1.5e-18 Score=139.64 Aligned_cols=152 Identities=21% Similarity=0.192 Sum_probs=128.4
Q ss_pred CCCCCCCCEEEccCCCCcCCCCc------ccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-ccc
Q 039201 90 VGNPSFVRVIVLANNSYYGEIPN------EVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIF 161 (258)
Q Consensus 90 ~~~l~~L~~L~Ls~n~l~g~~p~------~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~ 161 (258)
+.....++.++++.+.+.|.+|. .+.++++|++|+ ++|.+.+ +| .+.++++|++|++++|.++ .+| .+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 45567888889999999998887 889999999999 7788876 78 8899999999999999998 678 677
Q ss_pred CCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchh
Q 039201 162 NISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDT 239 (258)
Q Consensus 162 ~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~ 239 (258)
.+++|++ +++++|++++ +| .++.+++|++|++++|.+++. ..+..+.++++|++| ++|++++.+|..
T Consensus 91 ~~~~L~~----L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~-----~~~~~l~~l~~L~~L~l~~N~l~~~~~~~ 159 (198)
T 1ds9_A 91 VADTLEE----LWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNW-----GEIDKLAALDKLEDLLLAGNPLYNDYKEN 159 (198)
T ss_dssp HHHHCSE----EEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCH-----HHHHHHTTTTTCSEEEECSCHHHHHHHTT
T ss_pred cCCcCCE----EECcCCcCCc-CC-ccccCCCCCEEECCCCcCCch-----hHHHHHhcCCCCCEEEecCCccccccccc
Confidence 7899999 9999999986 56 688999999999999999862 022478889999988 899999887753
Q ss_pred ----------hcCCCCCCeEeccCCcCC
Q 039201 240 ----------TGELRNLQAPDLSENNLN 257 (258)
Q Consensus 240 ----------l~~l~~L~~L~Ls~N~l~ 257 (258)
+..+++|++|| +|.++
T Consensus 160 ~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 160 NATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp TTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred cchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 78899999998 55543
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.57 E-value=6.2e-15 Score=116.16 Aligned_cols=127 Identities=14% Similarity=0.126 Sum_probs=82.5
Q ss_pred cCCCCCCCCEEEccCCCCcCCCCcccCCCC-CCcEEc-CCCccCCCCCcccCCCCCCCEEEcccccccccccc-ccCCCC
Q 039201 89 FVGNPSFVRVIVLANNSYYGEIPNEVGCLS-RLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLRS-IFNISS 165 (258)
Q Consensus 89 ~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~-~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p~-~~~l~~ 165 (258)
.+.+..+|++|++++|.++ .+|. +..+. +|++|+ ++|.+++. +.+..+++|++|++++|.+++..|. +..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 3567788899999999887 4554 44444 777777 66666653 5577777777777777777744333 367777
Q ss_pred cceecceeecCCCccccccCc--cccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc
Q 039201 166 LEFQSSETEKSKNRFTGKLGI--DFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL 227 (258)
Q Consensus 166 L~~l~l~L~l~~n~~~g~ip~--~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L 227 (258)
|++ +++++|++. .+|. .+..+++|++|++++|.++.. |.. ....+..+++|++|
T Consensus 90 L~~----L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~--~~~~~~~l~~L~~L 145 (176)
T 1a9n_A 90 LTE----LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNK-KHY--RLYVIYKVPQVRVL 145 (176)
T ss_dssp CCE----EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGS-TTH--HHHHHHHCTTCSEE
T ss_pred CCE----EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCc-HhH--HHHHHHHCCcccee
Confidence 777 777777774 5555 667777777777777777641 110 00125555555555
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=8.6e-15 Score=135.69 Aligned_cols=153 Identities=19% Similarity=0.148 Sum_probs=114.0
Q ss_pred ccCCccCCCCCCCCEEE-ccCCCCcCCCCc------ccCC--CCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcccccc
Q 039201 84 GFLSPFVGNPSFVRVIV-LANNSYYGEIPN------EVGC--LSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNF 153 (258)
Q Consensus 84 g~lp~~~~~l~~L~~L~-Ls~n~l~g~~p~------~l~~--l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l 153 (258)
+.+|..++.+++|+.|+ ++.|.+. .++. .+.. ...|++|+ ++|.+++ +|. ++.+++|++|+|++|.+
T Consensus 399 ~~~~~~l~~l~~L~~L~~l~~n~~~-~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l 475 (567)
T 1dce_A 399 LYEKETLQYFSTLKAVDPMRAAYLD-DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRL 475 (567)
T ss_dssp GGHHHHHHHHHHHHHHCGGGHHHHH-HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCC
T ss_pred cCCHHHHHHHHhcccCcchhhcccc-hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCcccc
Confidence 34445566777788887 5555322 1110 0000 12488888 7777775 776 89999999999999999
Q ss_pred ccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--ccc
Q 039201 154 SGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYN 230 (258)
Q Consensus 154 ~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N 230 (258)
+ .+| .++++++|++ |++++|++++ +| .++.+++|++|++++|.+++.. .|..++++++|+.| ++|
T Consensus 476 ~-~lp~~~~~l~~L~~----L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~-----~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 476 R-ALPPALAALRCLEV----LQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSA-----AIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp C-CCCGGGGGCTTCCE----EECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSS-----TTGGGGGCTTCCEEECTTS
T ss_pred c-ccchhhhcCCCCCE----EECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCC-----CcHHHhcCCCCCEEEecCC
Confidence 8 888 8999999999 9999999986 77 7899999999999999998842 16788888888888 899
Q ss_pred ccccccchh---hcCCCCCCeEec
Q 039201 231 QLTGTIPDT---TGELRNLQAPDL 251 (258)
Q Consensus 231 ~l~g~ip~~---l~~l~~L~~L~L 251 (258)
++++..|.. +..+++|+.|++
T Consensus 544 ~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 544 SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cCCCCccHHHHHHHHCcccCccCC
Confidence 999765532 345889999875
No 129
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.53 E-value=4.4e-14 Score=110.85 Aligned_cols=102 Identities=22% Similarity=0.239 Sum_probs=57.0
Q ss_pred EEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcccc
Q 039201 73 TKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAEN 151 (258)
Q Consensus 73 ~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n 151 (258)
+.+++++++++. +|..+ .+.|++|++++|.+++..|..+.++++|++|+ ++|++++..|..+.++++|++|+|++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 356666777763 66555 37788888888888765555555555555555 444444333333445555555555555
Q ss_pred ccccccc-cccCCCCcceecceeecCCCccc
Q 039201 152 NFSGTLR-SIFNISSLEFQSSETEKSKNRFT 181 (258)
Q Consensus 152 ~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~ 181 (258)
++++..+ .+.++++|++ +++++|.++
T Consensus 89 ~l~~~~~~~~~~l~~L~~----L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTH----IWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCE----EECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCE----EEeCCCCCC
Confidence 5553333 3444555555 455555444
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=1.5e-14 Score=113.94 Aligned_cols=126 Identities=21% Similarity=0.208 Sum_probs=97.4
Q ss_pred cEEEEEcCCCCCcccCCccCCCCC-CCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEc
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPS-FVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLIL 148 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~-~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L 148 (258)
+++.+++++|.+.. +|. +..+. +|++|++++|.+++. ..++++++|++|+ ++|.+++..|..+..+++|++|++
T Consensus 20 ~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 20 RDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp SCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred CceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 78889999988874 454 44444 899999999988853 5678888999998 777777543343488899999999
Q ss_pred cccccccccc---cccCCCCcceecceeecCCCccccccCcc----ccCCCCCCeEecCCCcCCc
Q 039201 149 AENNFSGTLR---SIFNISSLEFQSSETEKSKNRFTGKLGID----FNSLINLARLNLGQKNLGI 206 (258)
Q Consensus 149 ~~n~l~g~~p---~~~~l~~L~~l~l~L~l~~n~~~g~ip~~----~~~l~~L~~L~ls~N~l~g 206 (258)
++|.++ .+| .+..+++|++ +++++|.++ .+|.. +..+++|++|+++.|....
T Consensus 96 ~~N~i~-~~~~~~~l~~l~~L~~----L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 96 TNNSLV-ELGDLDPLASLKSLTY----LCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CSCCCC-CGGGGGGGGGCTTCCE----EECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCcCC-cchhhHhhhcCCCCCE----EEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 999886 444 5778888888 888999887 56664 7888999999998887654
No 131
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.52 E-value=4e-14 Score=123.44 Aligned_cols=172 Identities=19% Similarity=0.181 Sum_probs=114.6
Q ss_pred CcEEEEEcCCCCCcccCCc-cCCCCCCCCE-EEccCCCCcCCCCcccCCCCCCcEEc-CCCccCC---------------
Q 039201 70 PRVTKLDLRSKSIGGFLSP-FVGNPSFVRV-IVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGG--------------- 131 (258)
Q Consensus 70 ~~v~~l~l~~~~l~g~lp~-~~~~l~~L~~-L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g--------------- 131 (258)
++++.|++++|.+.+.+|+ .+.+++++++ +++++|++....|..+.++++|++|+ ++|.+.+
T Consensus 54 ~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l 133 (350)
T 4ay9_X 54 GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL 133 (350)
T ss_dssp TTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEE
T ss_pred CCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhh
Confidence 3678888888877666654 4566666654 44556666654456667777777776 3333322
Q ss_pred ---------CCC-cccCCC-CCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCc-cccCCCCCCeEe
Q 039201 132 ---------KIP-ESLGQL-GSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGI-DFNSLINLARLN 198 (258)
Q Consensus 132 ---------~ip-~~~~~l-~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~-~~~~l~~L~~L~ 198 (258)
.+| ..+..+ ..+++|++++|+++ .+| .....++|++ +++.+++..+.+|. .+..+++|++|+
T Consensus 134 ~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~----l~l~~~n~l~~i~~~~f~~l~~L~~Ld 208 (350)
T 4ay9_X 134 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDE----LNLSDNNNLEELPNDVFHGASGPVILD 208 (350)
T ss_dssp EEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEE----EECTTCTTCCCCCTTTTTTEECCSEEE
T ss_pred hhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhH----HhhccCCcccCCCHHHhccCcccchhh
Confidence 222 233444 35778888888887 455 6666677888 88876444456765 468899999999
Q ss_pred cCCCcCCccCCCCchhhhhhcCCCCCccccccccccccchhhcCCCCCCeEeccCC
Q 039201 199 LGQKNLGIGTTSDLDFITLLRNCSKLKTLQYNQLTGTIPDTTGELRNLQAPDLSEN 254 (258)
Q Consensus 199 ls~N~l~g~~p~~~~~~~~l~~l~~L~~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N 254 (258)
+++|.++. +|. ..+.++++|+.+..++++ .+| .+.++++|+.++++++
T Consensus 209 Ls~N~l~~-lp~-----~~~~~L~~L~~l~~~~l~-~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 209 ISRTRIHS-LPS-----YGLENLKKLRARSTYNLK-KLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp CTTSCCCC-CCS-----SSCTTCCEEECTTCTTCC-CCC-CTTTCCSCCEEECSCH
T ss_pred cCCCCcCc-cCh-----hhhccchHhhhccCCCcC-cCC-CchhCcChhhCcCCCC
Confidence 99999986 332 346666666666666776 777 4788999999998764
No 132
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.50 E-value=1.5e-13 Score=108.17 Aligned_cols=102 Identities=18% Similarity=0.167 Sum_probs=58.1
Q ss_pred EEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcccc
Q 039201 73 TKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAEN 151 (258)
Q Consensus 73 ~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n 151 (258)
+.++++++++. .+|..+. +.|++|++++|.+++..|..+.++++|++|+ ++|++++..+..+.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 46777777774 5676554 7788888888888765555555555555555 444444322223345555555555555
Q ss_pred ccccccc-cccCCCCcceecceeecCCCccc
Q 039201 152 NFSGTLR-SIFNISSLEFQSSETEKSKNRFT 181 (258)
Q Consensus 152 ~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~ 181 (258)
++++..+ .+..+++|++ +++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~----L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTH----IYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSE----EECCSSCBC
T ss_pred ccceeCHHHhccccCCCE----EEeCCCCcc
Confidence 5553323 3444555555 555555544
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.48 E-value=2.1e-13 Score=106.91 Aligned_cols=105 Identities=13% Similarity=0.129 Sum_probs=92.2
Q ss_pred CCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceeccee
Q 039201 96 VRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSET 173 (258)
Q Consensus 96 L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L 173 (258)
.+++++++|.++ .+|..+. ++|++|+ ++|.+++..|..+.++++|++|+|++|++++..| .+..+++|++ |
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~----L 83 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQ----L 83 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE----E
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCE----E
Confidence 578999999998 5887663 8899999 8899998888889999999999999999996555 6789999999 9
Q ss_pred ecCCCccccccCccccCCCCCCeEecCCCcCCcc
Q 039201 174 EKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIG 207 (258)
Q Consensus 174 ~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~ 207 (258)
++++|++++..+..+..+++|++|++++|.++..
T Consensus 84 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9999999976666789999999999999999875
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.45 E-value=5.3e-13 Score=105.08 Aligned_cols=104 Identities=13% Similarity=0.164 Sum_probs=91.7
Q ss_pred CEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecceee
Q 039201 97 RVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETE 174 (258)
Q Consensus 97 ~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~ 174 (258)
+.+++++|.++ .+|..+. ++|++|+ ++|.+.+..|..+.++++|++|+|++|++++..+ .+.++++|++ |+
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~----L~ 87 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQ----LD 87 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE----EE
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhE----EE
Confidence 78999999995 7898764 8999999 8899998888899999999999999999996545 5789999999 99
Q ss_pred cCCCccccccCccccCCCCCCeEecCCCcCCcc
Q 039201 175 KSKNRFTGKLGIDFNSLINLARLNLGQKNLGIG 207 (258)
Q Consensus 175 l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~ 207 (258)
+++|++++..+..+..+++|++|++++|.+...
T Consensus 88 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 88 LNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 999999965555699999999999999999863
No 135
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.36 E-value=1.9e-12 Score=112.30 Aligned_cols=106 Identities=15% Similarity=0.121 Sum_probs=83.5
Q ss_pred ccccceeeCCCCCcEEEEEcCCC-CCcccCCccCCCCCCCCEEEccC-CCCcCCCCcccCCCCCCcEEc-CCCccCCCCC
Q 039201 58 CQWTGVTCSHRHPRVTKLDLRSK-SIGGFLSPFVGNPSFVRVIVLAN-NSYYGEIPNEVGCLSRLETLI-GGYRLGGKIP 134 (258)
Q Consensus 58 c~w~gv~c~~~~~~v~~l~l~~~-~l~g~lp~~~~~l~~L~~L~Ls~-n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip 134 (258)
|.|..+.|. ++ +++ .+|+ +..+++|++|+|++ |.+++..|..++++++|++|+ ++|++++..|
T Consensus 8 C~~~~v~~~------------~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 73 (347)
T 2ifg_A 8 HGSSGLRCT------------RDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP 73 (347)
T ss_dssp SSSSCEECC------------SSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT
T ss_pred ccCCEEEcC------------CCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCH
Confidence 666666664 44 566 3788 99999999999996 999876667788999999998 8888888888
Q ss_pred cccCCCCCCCEEEcccccccccccc-ccCCCCcceecceeecCCCcccc
Q 039201 135 ESLGQLGSINYLILAENNFSGTLRS-IFNISSLEFQSSETEKSKNRFTG 182 (258)
Q Consensus 135 ~~~~~l~~L~~L~L~~n~l~g~~p~-~~~l~~L~~l~l~L~l~~n~~~g 182 (258)
..|.++++|++|+|++|+|++..+. +..++ |++ |++.+|.+..
T Consensus 74 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~----l~l~~N~~~c 117 (347)
T 2ifg_A 74 DAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQE----LVLSGNPLHC 117 (347)
T ss_dssp TGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCE----EECCSSCCCC
T ss_pred HHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceE----EEeeCCCccC
Confidence 8888999999999999999854444 44444 888 8888888764
No 136
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.34 E-value=1.6e-13 Score=127.11 Aligned_cols=172 Identities=16% Similarity=0.126 Sum_probs=85.1
Q ss_pred cEEEEEcCCCCCc----ccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc----------------------
Q 039201 71 RVTKLDLRSKSIG----GFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI---------------------- 124 (258)
Q Consensus 71 ~v~~l~l~~~~l~----g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~---------------------- 124 (258)
.++.|+++++.++ +.++..+..+++|++|++++|.+.+ +|..+.++++|++|+
T Consensus 193 ~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~ 271 (592)
T 3ogk_B 193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRK 271 (592)
T ss_dssp CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTT
T ss_pred CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhcccc
Confidence 4555555555554 2333344455666666666665543 333333444444443
Q ss_pred -----CCCccCCCCCcccCCCCCCCEEEccccccccccc--cccCCCCcceecceeecCCCccccccCccccCCCCCCeE
Q 039201 125 -----GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR--SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARL 197 (258)
Q Consensus 125 -----~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p--~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L 197 (258)
-.+...+.+|..+..+++|++|++++|.+++... .+..+++|++ |+++++-..+.++.....+++|++|
T Consensus 272 L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~----L~L~~~~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 272 LCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV----LETRNVIGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp CCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCE----EEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred ccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCE----EeccCccCHHHHHHHHHhCCCCCEE
Confidence 1112233455555666777777777777654333 3456677777 4444222223333333455566666
Q ss_pred ecCC-----------CcCCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcC-CCCCCeEecc
Q 039201 198 NLGQ-----------KNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGE-LRNLQAPDLS 252 (258)
Q Consensus 198 ~ls~-----------N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~-l~~L~~L~Ls 252 (258)
++++ |.+++. ........+++|++| +.|++++..+..++. +++|+.|+++
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~-----~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQR-----GLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHH-----HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred EeecCccccccccccCccCHH-----HHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 6652 344332 012223334455554 445555555555443 5555555553
No 137
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.33 E-value=4.3e-12 Score=110.11 Aligned_cols=104 Identities=14% Similarity=0.074 Sum_probs=89.2
Q ss_pred CEEEccCC-CCcCCCCcccCCCCCCcEEc-CC-CccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecce
Q 039201 97 RVIVLANN-SYYGEIPNEVGCLSRLETLI-GG-YRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSE 172 (258)
Q Consensus 97 ~~L~Ls~n-~l~g~~p~~l~~l~~L~~L~-~~-n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~ 172 (258)
..++.+++ +++ .+|. +..+++|++|+ ++ |.+.+..|..+.++++|++|+|++|++++..| .+.++++|++
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~---- 84 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR---- 84 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE----
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCE----
Confidence 45788988 888 5999 99999999999 54 88887777889999999999999999999888 8899999999
Q ss_pred eecCCCccccccCccccCCCCCCeEecCCCcCCcc
Q 039201 173 TEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIG 207 (258)
Q Consensus 173 L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~ 207 (258)
|+|++|++++..+..+..++ |+.|++.+|.+...
T Consensus 85 L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 85 LNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp EECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred EeCCCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 99999999965444455554 99999999998753
No 138
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.32 E-value=1.5e-13 Score=127.30 Aligned_cols=149 Identities=16% Similarity=0.117 Sum_probs=75.3
Q ss_pred EEEEEcCCCC-Ccc-cCCccCCCCCCCCEEEccCCCCcCC----CCcccCCCCCCcEEc-CCCccC----CCCCcccCCC
Q 039201 72 VTKLDLRSKS-IGG-FLSPFVGNPSFVRVIVLANNSYYGE----IPNEVGCLSRLETLI-GGYRLG----GKIPESLGQL 140 (258)
Q Consensus 72 v~~l~l~~~~-l~g-~lp~~~~~l~~L~~L~Ls~n~l~g~----~p~~l~~l~~L~~L~-~~n~l~----g~ip~~~~~l 140 (258)
+++|+++++. +.. .++.....+++|++|++++|.+++. ++....++++|++|+ +.|.++ +.++..+.++
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 6666666654 111 1222233566666677766666543 223334566666666 445444 2233334456
Q ss_pred CCCCEEEccccccccccc-cccCCCCcceecce-----------------------eecCCCccccccCccccCCCCCCe
Q 039201 141 GSINYLILAENNFSGTLR-SIFNISSLEFQSSE-----------------------TEKSKNRFTGKLGIDFNSLINLAR 196 (258)
Q Consensus 141 ~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~-----------------------L~l~~n~~~g~ip~~~~~l~~L~~ 196 (258)
++|++|++++|.+.+ +| .+.++++|++|++. ++++++ ..+.+|..+..+++|++
T Consensus 220 ~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~ 297 (592)
T 3ogk_B 220 RSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRK 297 (592)
T ss_dssp TTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCE
T ss_pred CCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcE
Confidence 666666666665553 33 44444444441110 333332 13345666666777777
Q ss_pred EecCCCcCCccCCCCchhhhhhcCCCCCccc
Q 039201 197 LNLGQKNLGIGTTSDLDFITLLRNCSKLKTL 227 (258)
Q Consensus 197 L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L 227 (258)
|++++|.+++.. ....+.++++|+.|
T Consensus 298 L~Ls~~~l~~~~-----~~~~~~~~~~L~~L 323 (592)
T 3ogk_B 298 LDLLYALLETED-----HCTLIQKCPNLEVL 323 (592)
T ss_dssp EEETTCCCCHHH-----HHHHHTTCTTCCEE
T ss_pred EecCCCcCCHHH-----HHHHHHhCcCCCEE
Confidence 777777765431 22234455555554
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.22 E-value=3.2e-13 Score=118.95 Aligned_cols=165 Identities=16% Similarity=0.157 Sum_probs=108.6
Q ss_pred cEEEEEcCCCCCcccCCcc----CC-CCCCCCEEEccCCCCcCCCCccc-CCCCCCcEEc-CCCccCCCCCccc-----C
Q 039201 71 RVTKLDLRSKSIGGFLSPF----VG-NPSFVRVIVLANNSYYGEIPNEV-GCLSRLETLI-GGYRLGGKIPESL-----G 138 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~----~~-~l~~L~~L~Ls~n~l~g~~p~~l-~~l~~L~~L~-~~n~l~g~ip~~~-----~ 138 (258)
.++.+++++|.++..-... +. ....|++|+|++|.++..-...+ ..+++|++|+ ++|.++..-...+ .
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~ 152 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH 152 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence 6889999999987543332 22 23689999999998864322222 2456788888 6776654333333 3
Q ss_pred CCCCCCEEEcccccccc----ccc-cccCCCCcceecceeecCCCccccc----cCccccCCCCCCeEecCCCcCCccCC
Q 039201 139 QLGSINYLILAENNFSG----TLR-SIFNISSLEFQSSETEKSKNRFTGK----LGIDFNSLINLARLNLGQKNLGIGTT 209 (258)
Q Consensus 139 ~l~~L~~L~L~~n~l~g----~~p-~~~~l~~L~~l~l~L~l~~n~~~g~----ip~~~~~l~~L~~L~ls~N~l~g~~p 209 (258)
..++|++|+|++|.++. .++ .+...++|++ |++++|.+... ++..+...++|++|++++|.+++...
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~----L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTH----LSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA 228 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCE----EECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCE----EeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence 46788899998888864 233 4567788888 88888888642 35556677788888888888875310
Q ss_pred CCchhhhhhcCCCCCccc--cccccccccchhhc
Q 039201 210 SDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTG 241 (258)
Q Consensus 210 ~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~ 241 (258)
..+...+...+.|++| ++|.+++.-...+.
T Consensus 229 --~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 229 --LALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp --HHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred --HHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 0133445566677776 77877755444443
No 140
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.20 E-value=5.5e-13 Score=123.38 Aligned_cols=128 Identities=13% Similarity=0.081 Sum_probs=80.4
Q ss_pred cEEEEEcCCCCCcccCCccCC-CCCCCCEEEccCC-CCcCC-CCcccCCCCCCcEEc-CCCccCCCCCccc----CCCCC
Q 039201 71 RVTKLDLRSKSIGGFLSPFVG-NPSFVRVIVLANN-SYYGE-IPNEVGCLSRLETLI-GGYRLGGKIPESL----GQLGS 142 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~-~l~~L~~L~Ls~n-~l~g~-~p~~l~~l~~L~~L~-~~n~l~g~ip~~~----~~l~~ 142 (258)
++++|+++++.+++..+..+. .+++|++|++++| .++.. ++....++++|++|+ ++|.+++..+..+ ..+++
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~ 185 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS 185 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCC
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCc
Confidence 677788887777766555554 5778888888877 44322 344344677888887 5566655443333 35668
Q ss_pred CCEEEccccc--ccc-ccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCC
Q 039201 143 INYLILAENN--FSG-TLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQK 202 (258)
Q Consensus 143 L~~L~L~~n~--l~g-~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N 202 (258)
|++|++++|. ++. .++ ...++++|++ |++++|...+.+|..+..+++|++|+++.+
T Consensus 186 L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~----L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 186 LVSLNISCLASEVSFSALERLVTRCPNLKS----LKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp CCEEECTTCCSCCCHHHHHHHHHHCTTCCE----EECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred CcEEEecccCCcCCHHHHHHHHHhCCCCcE----EecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 8888888775 221 122 2334677888 777777333347777777777888875544
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.17 E-value=3.7e-13 Score=118.55 Aligned_cols=82 Identities=23% Similarity=0.195 Sum_probs=33.6
Q ss_pred eecCCCcccc----ccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccc----cchhhcC
Q 039201 173 TEKSKNRFTG----KLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGT----IPDTTGE 242 (258)
Q Consensus 173 L~l~~n~~~g----~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~----ip~~l~~ 242 (258)
|++++|.++. .++..+...++|++|++++|.+++... ..+...+...+.|+.| ++|.+++. ++..+..
T Consensus 160 L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~--~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~ 237 (372)
T 3un9_A 160 LRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGL--ELLAAQLDRNRQLQELNVAYNGAGDTAALALARAARE 237 (372)
T ss_dssp EECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHH--HHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHH
T ss_pred eeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHH--HHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHh
Confidence 4555555432 123333444455555555555443100 0012333444444444 44544431 2223333
Q ss_pred CCCCCeEeccCCcC
Q 039201 243 LRNLQAPDLSENNL 256 (258)
Q Consensus 243 l~~L~~L~Ls~N~l 256 (258)
.++|++|||++|++
T Consensus 238 ~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 238 HPSLELLHLYFNEL 251 (372)
T ss_dssp CSSCCEEECTTSSC
T ss_pred CCCCCEEeccCCCC
Confidence 44455555555544
No 142
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.11 E-value=1.5e-12 Score=120.36 Aligned_cols=174 Identities=10% Similarity=0.049 Sum_probs=89.1
Q ss_pred cEEEEEcCCCCCcccC-CccCCCCCCCCEEEccCCCCcC-CCCcccCCCCCCcEEcC----------CCccCCCCCcccC
Q 039201 71 RVTKLDLRSKSIGGFL-SPFVGNPSFVRVIVLANNSYYG-EIPNEVGCLSRLETLIG----------GYRLGGKIPESLG 138 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~l-p~~~~~l~~L~~L~Ls~n~l~g-~~p~~l~~l~~L~~L~~----------~n~l~g~ip~~~~ 138 (258)
+++.|+++++.+++.. +..+..+++|++|++++| +.. .++.....+++|++|+- .+.+++.....+.
T Consensus 290 ~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~ 368 (594)
T 2p1m_B 290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS 368 (594)
T ss_dssp TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH
T ss_pred CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH
Confidence 7888999888876542 233567788888888876 331 12222223566666631 1222221111111
Q ss_pred -CCCCCCEEEccccccccccc-c------------------------------------ccCCCCcceecceeecCCCcc
Q 039201 139 -QLGSINYLILAENNFSGTLR-S------------------------------------IFNISSLEFQSSETEKSKNRF 180 (258)
Q Consensus 139 -~l~~L~~L~L~~n~l~g~~p-~------------------------------------~~~l~~L~~l~l~L~l~~n~~ 180 (258)
++++|++|.++.|.+++..+ . +..+++|++ |++++ .+
T Consensus 369 ~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~----L~L~~-~l 443 (594)
T 2p1m_B 369 MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRR----LSLSG-LL 443 (594)
T ss_dssp HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCE----EECCS-SC
T ss_pred HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccE----EeecC-cc
Confidence 24444555444444443322 2 233444444 44433 33
Q ss_pred ccccCccccC-CCCCCeEecCCCcCCccCCCCchhhhhh-cCCCCCccc--cccccccccch-hhcCCCCCCeEeccCCc
Q 039201 181 TGKLGIDFNS-LINLARLNLGQKNLGIGTTSDLDFITLL-RNCSKLKTL--QYNQLTGTIPD-TTGELRNLQAPDLSENN 255 (258)
Q Consensus 181 ~g~ip~~~~~-l~~L~~L~ls~N~l~g~~p~~~~~~~~l-~~l~~L~~L--~~N~l~g~ip~-~l~~l~~L~~L~Ls~N~ 255 (258)
++..+..++. +++|++|++++|.+++. .+..+ .++++|+.| ++|.+++..+. .+..+++|++|++++|+
T Consensus 444 ~~~~~~~l~~~~~~L~~L~L~~~~i~~~------~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 444 TDKVFEYIGTYAKKMEMLSVAFAGDSDL------GMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEESCCSSHH------HHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred cHHHHHHHHHhchhccEeeccCCCCcHH------HHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence 3333333433 56666666666666543 22222 456666666 66666544433 33446777777777776
Q ss_pred C
Q 039201 256 L 256 (258)
Q Consensus 256 l 256 (258)
+
T Consensus 518 ~ 518 (594)
T 2p1m_B 518 V 518 (594)
T ss_dssp C
T ss_pred C
Confidence 5
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.04 E-value=8.4e-10 Score=95.09 Aligned_cols=167 Identities=13% Similarity=0.071 Sum_probs=118.4
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEcCCCc-------------c--------
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLIGGYR-------------L-------- 129 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~~~n~-------------l-------- 129 (258)
+++.++++. +++..-+.++..+++|+++++++|.+...-+..|.++.++.++..... +
T Consensus 102 ~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~ 180 (329)
T 3sb4_A 102 TLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLET 180 (329)
T ss_dssp TCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEE
T ss_pred CCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccce
Confidence 788999988 777555567999999999999999887434456677777777762220 0
Q ss_pred ------CCCCCccc----------------------------CCCCCCCEEEccccccccccc--cccCCCCcceeccee
Q 039201 130 ------GGKIPESL----------------------------GQLGSINYLILAENNFSGTLR--SIFNISSLEFQSSET 173 (258)
Q Consensus 130 ------~g~ip~~~----------------------------~~l~~L~~L~L~~n~l~g~~p--~~~~l~~L~~l~l~L 173 (258)
.+.+|..+ ..+++|+++++++|+++ .+| .|.++++|+. +
T Consensus 181 ~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~----l 255 (329)
T 3sb4_A 181 TIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLK----I 255 (329)
T ss_dssp EEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCE----E
T ss_pred eEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCE----E
Confidence 00011000 02788999999998887 565 7888999999 8
Q ss_pred ecCCCccccccCccccCCCCCC-eEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEe
Q 039201 174 EKSKNRFTGKLGIDFNSLINLA-RLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPD 250 (258)
Q Consensus 174 ~l~~n~~~g~ip~~~~~l~~L~-~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~ 250 (258)
++.+| +...-+..|..+++|+ .+++.+ .++.. -+..+.+|++|+.+ +.|+++.--+..|.++++|+.++
T Consensus 256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I------~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAI------EFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEE------CTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred ECCcc-cceehHHHhhCChhccEEEEEcc-cceEE------chhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 88887 6544445688889998 999987 55432 23568888888888 67888844455788889999886
Q ss_pred c
Q 039201 251 L 251 (258)
Q Consensus 251 L 251 (258)
.
T Consensus 328 ~ 328 (329)
T 3sb4_A 328 K 328 (329)
T ss_dssp C
T ss_pred c
Confidence 4
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.01 E-value=4.7e-10 Score=96.67 Aligned_cols=84 Identities=19% Similarity=0.153 Sum_probs=63.1
Q ss_pred CCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCc-cc-cccccccccchhh
Q 039201 163 ISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLK-TL-QYNQLTGTIPDTT 240 (258)
Q Consensus 163 l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~-~L-~~N~l~g~ip~~l 240 (258)
+++|+. +++++|+++..-+..+..+++|+.+++++| ++. | -...+.++++|+ .+ -.++++.--+..|
T Consensus 225 ~~~L~~----l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~-I-----~~~aF~~~~~L~~~l~l~~~l~~I~~~aF 293 (329)
T 3sb4_A 225 MPNLVS----LDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKT-I-----GQRVFSNCGRLAGTLELPASVTAIEFGAF 293 (329)
T ss_dssp CTTCCE----EECTTBCCCEECTTTTTTCTTCCEEECCTT-CCE-E-----CTTTTTTCTTCCEEEEECTTCCEECTTTT
T ss_pred cCCCeE----EECCCCCcceecHhhhhCCCCCCEEECCcc-cce-e-----hHHHhhCChhccEEEEEcccceEEchhhh
Confidence 577888 889998888444456888999999999887 543 2 235688888888 77 2226663345778
Q ss_pred cCCCCCCeEeccCCcCC
Q 039201 241 GELRNLQAPDLSENNLN 257 (258)
Q Consensus 241 ~~l~~L~~L~Ls~N~l~ 257 (258)
..+++|+.++++.|+++
T Consensus 294 ~~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 294 MGCDNLRYVLATGDKIT 310 (329)
T ss_dssp TTCTTEEEEEECSSCCC
T ss_pred hCCccCCEEEeCCCccC
Confidence 99999999999988764
No 145
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.98 E-value=2.2e-12 Score=108.20 Aligned_cols=170 Identities=13% Similarity=0.079 Sum_probs=96.4
Q ss_pred CCccccceeeCCCCCcEEEEEcCC---CCCcccCCc-cCCCCCCCCEEEccCCCCcCCCCc-ccCCCCCCcE--Ec-CCC
Q 039201 56 NLCQWTGVTCSHRHPRVTKLDLRS---KSIGGFLSP-FVGNPSFVRVIVLANNSYYGEIPN-EVGCLSRLET--LI-GGY 127 (258)
Q Consensus 56 ~~c~w~gv~c~~~~~~v~~l~l~~---~~l~g~lp~-~~~~l~~L~~L~Ls~n~l~g~~p~-~l~~l~~L~~--L~-~~n 127 (258)
..|.|.|+.|+..+.+|..+...+ ..+.+.+++ .+..++. .+...+|..++.++- .+...+.|+. ++ ..|
T Consensus 76 ~l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~--~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N 153 (267)
T 3rw6_A 76 ALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKL--IMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLN 153 (267)
T ss_dssp HHHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHH--HHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTT
T ss_pred HHHhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHH--HHHhccchhccccCHHHcCCCcchhhcCccccCC
Confidence 468999999987655776555544 223333432 2222221 233334433333321 1222222222 22 222
Q ss_pred ---ccCCCCCcccCCCCCCCEEEcccccccc--ccc-cccCCCCcceecceeecCCCccccccCccccCCC--CCCeEec
Q 039201 128 ---RLGGKIPESLGQLGSINYLILAENNFSG--TLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLI--NLARLNL 199 (258)
Q Consensus 128 ---~l~g~ip~~~~~l~~L~~L~L~~n~l~g--~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~--~L~~L~l 199 (258)
.+.+.++....++++|++|+|++|++++ .+| .+..+++|+. |+|++|++++. ..+..+. +|++|++
T Consensus 154 ~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~----L~Ls~N~i~~~--~~l~~l~~l~L~~L~L 227 (267)
T 3rw6_A 154 RRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKI----LNLSGNELKSE--RELDKIKGLKLEELWL 227 (267)
T ss_dssp SHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCE----EECTTSCCCSG--GGGGGGTTSCCSEEEC
T ss_pred HHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCE----EECCCCccCCc--hhhhhcccCCcceEEc
Confidence 2222222222567889999999999987 556 5668888998 88899998864 3344444 8899999
Q ss_pred CCCcCCccCCCCch-hhhhhcCCCCCccccccccc
Q 039201 200 GQKNLGIGTTSDLD-FITLLRNCSKLKTLQYNQLT 233 (258)
Q Consensus 200 s~N~l~g~~p~~~~-~~~~l~~l~~L~~L~~N~l~ 233 (258)
++|.+.+.+|..-. ....+..+++|+.|++-.++
T Consensus 228 ~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~v~ 262 (267)
T 3rw6_A 228 DGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELP 262 (267)
T ss_dssp TTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCBCC
T ss_pred cCCcCccccCcchhHHHHHHHHCcccCeECCcCCC
Confidence 99998876552111 12346667777777554443
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.94 E-value=3.6e-10 Score=98.96 Aligned_cols=175 Identities=11% Similarity=0.113 Sum_probs=106.4
Q ss_pred cEEEEEcCCCCCcc-c-------CCccCCCCCCCCEEEccCCCCc---------CCCCcccCCCCCCcEEcCCCccCCCC
Q 039201 71 RVTKLDLRSKSIGG-F-------LSPFVGNPSFVRVIVLANNSYY---------GEIPNEVGCLSRLETLIGGYRLGGKI 133 (258)
Q Consensus 71 ~v~~l~l~~~~l~g-~-------lp~~~~~l~~L~~L~Ls~n~l~---------g~~p~~l~~l~~L~~L~~~n~l~g~i 133 (258)
+|+.|.+...++.| . +.+++..+++|+.|.+.++... +.++..+..+++|+.|+...+..-.+
T Consensus 108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l 187 (362)
T 2ra8_A 108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI 187 (362)
T ss_dssp GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC
T ss_pred hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee
Confidence 67777777655543 2 1234556788888888765331 23444456778888888322211134
Q ss_pred CcccCCCCCCCEEEccccccccccc-ccc--CCCCcceecceeecC--CCccccc-----cCccc--cCCCCCCeEecCC
Q 039201 134 PESLGQLGSINYLILAENNFSGTLR-SIF--NISSLEFQSSETEKS--KNRFTGK-----LGIDF--NSLINLARLNLGQ 201 (258)
Q Consensus 134 p~~~~~l~~L~~L~L~~n~l~g~~p-~~~--~l~~L~~l~l~L~l~--~n~~~g~-----ip~~~--~~l~~L~~L~ls~ 201 (258)
|. + .+++|++|++..+.++.... .+. .+++|++ |+|+ .|...|. +...+ ..+++|++|++.+
T Consensus 188 ~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~----L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~ 261 (362)
T 2ra8_A 188 GK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEK----LVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVD 261 (362)
T ss_dssp CS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCE----EEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEES
T ss_pred cc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcE----EEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCC
Confidence 44 3 37889999998887764332 333 6888888 5543 2222111 11122 3578899999988
Q ss_pred CcCCccCCCCchhhhhh---cCCCCCccc--cccccccc----cchhhcCCCCCCeEeccCCcCC
Q 039201 202 KNLGIGTTSDLDFITLL---RNCSKLKTL--QYNQLTGT----IPDTTGELRNLQAPDLSENNLN 257 (258)
Q Consensus 202 N~l~g~~p~~~~~~~~l---~~l~~L~~L--~~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~ 257 (258)
|.+.+.. +..+ ..+++|+.| +.|.+++. ++..+..+++|+.|++++|.++
T Consensus 262 ~~i~~~~------~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 262 AEEQNVV------VEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTHHHH------HHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCchHH------HHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 8887542 2222 245667776 88888764 4444456788999999988875
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.67 E-value=7.5e-09 Score=90.60 Aligned_cols=175 Identities=14% Similarity=0.127 Sum_probs=109.7
Q ss_pred CcEEEEEcCCCCC---------cccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCccc--
Q 039201 70 PRVTKLDLRSKSI---------GGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESL-- 137 (258)
Q Consensus 70 ~~v~~l~l~~~~l---------~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~-- 137 (258)
++++.|.+..... .+.+...+..+++|+.|++++|.- -.++. + .+++|++|+ ..+.+.......+
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~-l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~ 215 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN-LSIGK-K-PRPNLKSLEIISGGLPDSVVEDILG 215 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT-CBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHH
T ss_pred chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC-ceecc-c-cCCCCcEEEEecCCCChHHHHHHHH
Confidence 4788888765432 123445567789999999988731 13454 3 378899998 4444443222233
Q ss_pred CCCCCCCEEEccc--cccccc--c----ccc--cCCCCcceecceeecCCCccccccCcccc---CCCCCCeEecCCCcC
Q 039201 138 GQLGSINYLILAE--NNFSGT--L----RSI--FNISSLEFQSSETEKSKNRFTGKLGIDFN---SLINLARLNLGQKNL 204 (258)
Q Consensus 138 ~~l~~L~~L~L~~--n~l~g~--~----p~~--~~l~~L~~l~l~L~l~~n~~~g~ip~~~~---~l~~L~~L~ls~N~l 204 (258)
..+++|++|+|+. |...|. + +.+ ..+++|++ |++.+|.+....+..+. .+++|++|+++.|.+
T Consensus 216 ~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~----L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKW----LGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCE----EEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCE----EeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 3789999999863 222221 1 212 35789999 88889988755444443 578999999999998
Q ss_pred CccCCCCchhhhhhcCCCCCccc--cccccccccchhhcC-CCCCCeEeccCCc
Q 039201 205 GIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGE-LRNLQAPDLSENN 255 (258)
Q Consensus 205 ~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~-l~~L~~L~Ls~N~ 255 (258)
++..+. .++..+.++++|+.| ++|.++...-..+.. + ...++++.|+
T Consensus 292 ~d~G~~--~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 292 TDEGAR--LLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp BHHHHH--HHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred ChHHHH--HHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 764110 123344566777777 788887554444443 2 3567877764
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.59 E-value=6.3e-07 Score=79.37 Aligned_cols=78 Identities=9% Similarity=0.069 Sum_probs=39.0
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEcCCCccCCCCCcccCCCCCCCEEEccc
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLIGGYRLGGKIPESLGQLGSINYLILAE 150 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~~~n~l~g~ip~~~~~l~~L~~L~L~~ 150 (258)
.++.+.+.. ++...-+..+.++.+|+.++++.|.++ .+|...-..++|+.+...+++...-...+.++++|+.+++..
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCT
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCC
Confidence 355566654 444333346777777777777777665 344322224555555532333321123344455555555543
No 149
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.48 E-value=4.7e-08 Score=81.81 Aligned_cols=105 Identities=25% Similarity=0.188 Sum_probs=76.4
Q ss_pred cCCCCCCCE--EEccccc---cccccc-cccCCCCcceecceeecCCCcccc--ccCccccCCCCCCeEecCCCcCCccC
Q 039201 137 LGQLGSINY--LILAENN---FSGTLR-SIFNISSLEFQSSETEKSKNRFTG--KLGIDFNSLINLARLNLGQKNLGIGT 208 (258)
Q Consensus 137 ~~~l~~L~~--L~L~~n~---l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g--~ip~~~~~l~~L~~L~ls~N~l~g~~ 208 (258)
+...+.|+. ++++.|. +.+.++ ...++++|+. |+|++|++++ .+|..+..+++|+.|+|++|.+++.
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~----L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~- 211 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLS----LNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE- 211 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCE----EECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCE----EECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-
Confidence 444444554 6667774 333334 3357899999 9999999998 6778888999999999999999973
Q ss_pred CCCchhhhhhcCCCCCccc--cccccccccch-------hhcCCCCCCeEec
Q 039201 209 TSDLDFITLLRNCSKLKTL--QYNQLTGTIPD-------TTGELRNLQAPDL 251 (258)
Q Consensus 209 p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~-------~l~~l~~L~~L~L 251 (258)
.....+..+ .|+.| ++|.+++.+|. .+..+++|+.||=
T Consensus 212 ----~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 212 ----RELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp ----GGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred ----hhhhhcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 112333333 67777 89999988773 3678999999874
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.39 E-value=1.9e-08 Score=79.64 Aligned_cols=65 Identities=15% Similarity=0.135 Sum_probs=42.4
Q ss_pred cCCCCCCCEEEccccccccc----cc-cccCCCCcceecceeec--CCCccccc----cCccccCCCCCCeEecCCCcCC
Q 039201 137 LGQLGSINYLILAENNFSGT----LR-SIFNISSLEFQSSETEK--SKNRFTGK----LGIDFNSLINLARLNLGQKNLG 205 (258)
Q Consensus 137 ~~~l~~L~~L~L~~n~l~g~----~p-~~~~l~~L~~l~l~L~l--~~n~~~g~----ip~~~~~l~~L~~L~ls~N~l~ 205 (258)
+...++|++|+|++|.++.. +. .+...++|++ |++ ++|.+... +...+...++|++|++++|.+.
T Consensus 89 L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~----L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 89 LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIE----LRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCE----EECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceE----EEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 44456777788888877632 33 5556677777 777 66777543 3344555677888888877764
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.25 E-value=8.6e-06 Score=72.04 Aligned_cols=122 Identities=15% Similarity=0.066 Sum_probs=63.6
Q ss_pred CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEcCCCccCCCCCcccCCCCCCCEEEcc
Q 039201 70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLIGGYRLGGKIPESLGQLGSINYLILA 149 (258)
Q Consensus 70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~~~n~l~g~ip~~~~~l~~L~~L~L~ 149 (258)
.+++.++++.+++.. ++........|+.+.+..+ +.---...|.++++|+.++-.+++...-...+.+ .+|+.+.+
T Consensus 180 ~~L~~l~l~~n~l~~-I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~l- 255 (401)
T 4fdw_A 180 YNLKKADLSKTKITK-LPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKL- 255 (401)
T ss_dssp TTCCEEECTTSCCSE-ECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEE-
T ss_pred ccCCeeecCCCcceE-echhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEe-
Confidence 368889998888764 4443333578888888754 4422234566777777776333333111122333 45555555
Q ss_pred ccccccccc--cccCCCCcceecceeecCCCccc-----cccCccccCCCCCCeEecC
Q 039201 150 ENNFSGTLR--SIFNISSLEFQSSETEKSKNRFT-----GKLGIDFNSLINLARLNLG 200 (258)
Q Consensus 150 ~n~l~g~~p--~~~~l~~L~~l~l~L~l~~n~~~-----g~ip~~~~~l~~L~~L~ls 200 (258)
.+.++ .++ .+.++++|+. +++.+|.+. ..-+..+..+++|+.+++.
T Consensus 256 p~~i~-~I~~~aF~~c~~L~~----l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 256 PNGVT-NIASRAFYYCPELAE----VTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp ETTCC-EECTTTTTTCTTCCE----EEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred CCCcc-EEChhHhhCCCCCCE----EEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence 23333 232 4555555555 444444432 1112334455555555554
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.25 E-value=2.3e-07 Score=73.32 Aligned_cols=113 Identities=13% Similarity=0.047 Sum_probs=52.9
Q ss_pred CCCCCCCEEEcccc-ccccc----cc-cccCCCCcceecceeecCCCccccc----cCccccCCCCCCeEecCCCcCCcc
Q 039201 138 GQLGSINYLILAEN-NFSGT----LR-SIFNISSLEFQSSETEKSKNRFTGK----LGIDFNSLINLARLNLGQKNLGIG 207 (258)
Q Consensus 138 ~~l~~L~~L~L~~n-~l~g~----~p-~~~~l~~L~~l~l~L~l~~n~~~g~----ip~~~~~l~~L~~L~ls~N~l~g~ 207 (258)
...++|++|+|++| .+... +. .+...++|++ |++++|++... +...+...++|++|++++|.++..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~----L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKK----FSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCE----EECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCE----EECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 44455555555555 44421 11 3334455555 55555555321 222333444555555555555432
Q ss_pred CCCCchhhhhhcCCCCCccc----cccccccc----cchhhcCCCCCCeEeccCCcC
Q 039201 208 TTSDLDFITLLRNCSKLKTL----QYNQLTGT----IPDTTGELRNLQAPDLSENNL 256 (258)
Q Consensus 208 ~p~~~~~~~~l~~l~~L~~L----~~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l 256 (258)
-- ..+...+...+.|++| ++|.+... +...+...++|++|+|++|++
T Consensus 109 g~--~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 109 GI--LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HH--HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HH--HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 00 0012334444444444 23555432 333444557788888887765
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.13 E-value=0.00039 Score=54.16 Aligned_cols=85 Identities=12% Similarity=0.045 Sum_probs=53.4
Q ss_pred CCcccCCCCCCCEEEccccccccc-cccccCCCCcceecceeecCCCc-cccccCccccCC----CCCCeEecCCCc-CC
Q 039201 133 IPESLGQLGSINYLILAENNFSGT-LRSIFNISSLEFQSSETEKSKNR-FTGKLGIDFNSL----INLARLNLGQKN-LG 205 (258)
Q Consensus 133 ip~~~~~l~~L~~L~L~~n~l~g~-~p~~~~l~~L~~l~l~L~l~~n~-~~g~ip~~~~~l----~~L~~L~ls~N~-l~ 205 (258)
+|.....-.+|++||++++.++.. +..+..+++|++ |+|++|. ++..--..++.+ ++|++|+++++. ++
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~----L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEK----IRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCE----EEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCE----EEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 344332334688888888887642 225667888888 7788774 554433345553 368888888774 66
Q ss_pred ccCCCCchhhhhhcCCCCCccc
Q 039201 206 IGTTSDLDFITLLRNCSKLKTL 227 (258)
Q Consensus 206 g~~p~~~~~~~~l~~l~~L~~L 227 (258)
.. -...+.++++|++|
T Consensus 129 D~------Gl~~L~~~~~L~~L 144 (176)
T 3e4g_A 129 DK------GIIALHHFRNLKYL 144 (176)
T ss_dssp HH------HHHHGGGCTTCCEE
T ss_pred HH------HHHHHhcCCCCCEE
Confidence 54 33456667777766
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.08 E-value=0.00021 Score=55.65 Aligned_cols=65 Identities=18% Similarity=0.130 Sum_probs=42.7
Q ss_pred cCCCCCCCEEEccccc-cccc-cccccCC----CCcceecceeecCCCc-cccccCccccCCCCCCeEecCCCc-CC
Q 039201 137 LGQLGSINYLILAENN-FSGT-LRSIFNI----SSLEFQSSETEKSKNR-FTGKLGIDFNSLINLARLNLGQKN-LG 205 (258)
Q Consensus 137 ~~~l~~L~~L~L~~n~-l~g~-~p~~~~l----~~L~~l~l~L~l~~n~-~~g~ip~~~~~l~~L~~L~ls~N~-l~ 205 (258)
+.++++|++|+|+++. ++.. +..+..+ ++|++ |++++|. ++..--..+.++++|++|+++++. ++
T Consensus 81 L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~----L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLE----MEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCE----EEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCE----EEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 5667888888888874 5432 1134443 36888 7787764 654434456778888888888775 44
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.65 E-value=0.012 Score=51.24 Aligned_cols=169 Identities=14% Similarity=0.073 Sum_probs=80.9
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEcCCCc-------------cC-CCCC--
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLIGGYR-------------LG-GKIP-- 134 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~~~n~-------------l~-g~ip-- 134 (258)
.++.+.+..+- .-.-...+..+.+|+.+++..+ ++-.-...+.++..|+.+...+. +. -.+|
T Consensus 163 ~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~ 240 (394)
T 4fs7_A 163 SLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDS 240 (394)
T ss_dssp TCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTT
T ss_pred CCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEECCC
Confidence 57777776542 2222345677778888877655 22111233445555554431000 00 0011
Q ss_pred ------cccCCCCCCCEEEcccccccc-------------------ccc--cccCCCCcceecceeecCCCccccccCcc
Q 039201 135 ------ESLGQLGSINYLILAENNFSG-------------------TLR--SIFNISSLEFQSSETEKSKNRFTGKLGID 187 (258)
Q Consensus 135 ------~~~~~l~~L~~L~L~~n~l~g-------------------~~p--~~~~l~~L~~l~l~L~l~~n~~~g~ip~~ 187 (258)
..+.++.+|+.+.+..+...- .++ .+..+.+|+. +.+.++ +...-...
T Consensus 241 ~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~----i~l~~~-i~~I~~~a 315 (394)
T 4fs7_A 241 FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTE----VKLLDS-VKFIGEEA 315 (394)
T ss_dssp CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCE----EEECTT-CCEECTTT
T ss_pred ceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccc----cccccc-cceechhh
Confidence 123445566666655443210 122 2334445555 444332 22111234
Q ss_pred ccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCcccc-cccccccc-chhhcCCCCCCeEeccCC
Q 039201 188 FNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTLQ-YNQLTGTI-PDTTGELRNLQAPDLSEN 254 (258)
Q Consensus 188 ~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L~-~N~l~g~i-p~~l~~l~~L~~L~Ls~N 254 (258)
+..+.+|+.+++..+ ++. | -...+.+|++|+.+. ...++ .| ...|..+.+|+.+++..+
T Consensus 316 F~~c~~L~~i~lp~~-v~~-I-----~~~aF~~c~~L~~i~lp~~l~-~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 316 FESCTSLVSIDLPYL-VEE-I-----GKRSFRGCTSLSNINFPLSLR-KIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTCTTCCEECCCTT-CCE-E-----CTTTTTTCTTCCEECCCTTCC-EECTTTBTTCTTCCEEEEEGG
T ss_pred hcCCCCCCEEEeCCc-ccE-E-----hHHhccCCCCCCEEEECcccc-EehHHHhhCCCCCCEEEECCC
Confidence 556667777776543 221 1 124566677777661 12244 33 345677788888877544
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.48 E-value=0.044 Score=47.65 Aligned_cols=122 Identities=18% Similarity=0.184 Sum_probs=70.8
Q ss_pred cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCC-cccCCCCCCcEEcCCCcc--------CC------CC--
Q 039201 71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIP-NEVGCLSRLETLIGGYRL--------GG------KI-- 133 (258)
Q Consensus 71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p-~~l~~l~~L~~L~~~n~l--------~g------~i-- 133 (258)
.++++.++. +++..-..++.++++|+.+++.++ ++ .++ ..+.++++|+.+...+.+ .+ .+
T Consensus 72 ~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~ 148 (394)
T 4fs7_A 72 KVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPE 148 (394)
T ss_dssp TEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCT
T ss_pred CceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCceeeecceeeecccccccccCc
Confidence 688888864 354333457888999999999765 33 232 345566666655411111 00 01
Q ss_pred ------CcccCCCCCCCEEEccccccccccc--cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCC
Q 039201 134 ------PESLGQLGSINYLILAENNFSGTLR--SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQK 202 (258)
Q Consensus 134 ------p~~~~~l~~L~~L~L~~n~l~g~~p--~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N 202 (258)
...+.++++|+.+.+..+.. .++ .+.++++|+. +++..+ +.-.-...+.++..|+.+.+..+
T Consensus 149 ~~~~i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~----i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 149 GVTVIGDEAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKS----IKLPRN-LKIIRDYCFAECILLENMEFPNS 218 (394)
T ss_dssp TCCEECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCB----CCCCTT-CCEECTTTTTTCTTCCBCCCCTT
T ss_pred cccccchhhhcccCCCcEEecCCccc--eeccccccCCCCceE----EEcCCC-ceEeCchhhccccccceeecCCC
Confidence 12466778888888865532 344 5667788888 666554 22222334556666776666544
No 157
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.26 E-value=0.0079 Score=44.21 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=16.9
Q ss_pred CCCEEEccccccccccc--cccCCCCcceecceeecCCCcc
Q 039201 142 SINYLILAENNFSGTLR--SIFNISSLEFQSSETEKSKNRF 180 (258)
Q Consensus 142 ~L~~L~L~~n~l~g~~p--~~~~l~~L~~l~l~L~l~~n~~ 180 (258)
+|++|+|++|+++ .+| .+..+++|++ ++|++|.+
T Consensus 32 ~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~----L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLT-ALPPGLLDALPALRT----AHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCS-SCCTTTGGGCTTCCE----EECCSSCC
T ss_pred CCCEEECCCCcCC-ccChhhhhhccccCE----EEecCCCe
Confidence 4555555555555 233 3444555555 55555544
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.16 E-value=0.04 Score=47.96 Aligned_cols=127 Identities=11% Similarity=0.085 Sum_probs=60.5
Q ss_pred ccCCCCCCcEEcCCCccCCCCCcccCCCCCCCEEEccccccccccc--cccCCCCcceecceeecCCCccccccCccccC
Q 039201 113 EVGCLSRLETLIGGYRLGGKIPESLGQLGSINYLILAENNFSGTLR--SIFNISSLEFQSSETEKSKNRFTGKLGIDFNS 190 (258)
Q Consensus 113 ~l~~l~~L~~L~~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p--~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~ 190 (258)
.+.+++.|+.+.-.+.....-...+.++++|+.+.+.. .++ .++ .+.++.+|+. +++..+ ++..-...+..
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~-~I~~~aF~~c~~L~~----i~lp~~-v~~I~~~aF~~ 332 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RIT-ELPESVFAGCISLKS----IDIPEG-ITQILDDAFAG 332 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCC-EECTTTTTTCTTCCE----EECCTT-CCEECTTTTTT
T ss_pred eeeecccccEEecccccceecCcccccccccccccCCC-ccc-ccCceeecCCCCcCE----EEeCCc-ccEehHhHhhC
Confidence 34556666666532222211123456667777777743 333 344 5666677777 666543 33222334666
Q ss_pred CCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcC
Q 039201 191 LINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNL 256 (258)
Q Consensus 191 l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 256 (258)
+.+|+.+.+..+ ++. | -...+.+|++|+.+ .++... -..+....+|+.+.+..|.+
T Consensus 333 C~~L~~i~ip~s-v~~-I-----~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 333 CEQLERIAIPSS-VTK-I-----PESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CTTCCEEEECTT-CCB-C-----CGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred CCCCCEEEECcc-cCE-E-----hHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 777777777543 221 1 12456667777666 333222 13455566777777766543
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.01 E-value=0.028 Score=48.93 Aligned_cols=122 Identities=11% Similarity=0.073 Sum_probs=82.3
Q ss_pred ccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEcCCCccCCCCCcccCCCCCCCEEEccccccccccc--cccCCCC
Q 039201 88 PFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLIGGYRLGGKIPESLGQLGSINYLILAENNFSGTLR--SIFNISS 165 (258)
Q Consensus 88 ~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p--~~~~l~~ 165 (258)
..+.....|+.+.+.++... .-...+.+++.|+.+.-.+.+...-...+.++.+|+.+++..+ ++ .+. .|.++++
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTT
T ss_pred ceeeecccccEEecccccce-ecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCC
Confidence 46778889999998765432 1234567888999888555555322346788999999999764 44 454 6788999
Q ss_pred cceecceeecCCCcccccc-CccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc
Q 039201 166 LEFQSSETEKSKNRFTGKL-GIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL 227 (258)
Q Consensus 166 L~~l~l~L~l~~n~~~g~i-p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L 227 (258)
|+. +.+..+ ++ .| ...+.++++|+.+++.++... ...+..++.|+.+
T Consensus 336 L~~----i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~~---------~~~~~~~~~L~~i 383 (394)
T 4gt6_A 336 LER----IAIPSS-VT-KIPESAFSNCTALNNIEYSGSRSQ---------WNAISTDSGLQNL 383 (394)
T ss_dssp CCE----EEECTT-CC-BCCGGGGTTCTTCCEEEESSCHHH---------HHTCBCCCCC---
T ss_pred CCE----EEECcc-cC-EEhHhHhhCCCCCCEEEECCceee---------hhhhhccCCCCEE
Confidence 999 777654 44 34 346888999999999877542 1345555556554
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.85 E-value=0.13 Score=44.19 Aligned_cols=58 Identities=14% Similarity=0.059 Sum_probs=26.9
Q ss_pred cCCCCCCCEEEccccccccccc--cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecC
Q 039201 137 LGQLGSINYLILAENNFSGTLR--SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLG 200 (258)
Q Consensus 137 ~~~l~~L~~L~L~~n~l~g~~p--~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls 200 (258)
+.++.+|+.+.+..+ ++ .++ .+.++++|+. +.+.++.++..-...+.++.+|+.+.+.
T Consensus 259 F~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~----i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 259 LQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTK----VVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCE----EEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred cceeehhcccccccc-ce-ecccccccccccccc----ccccccccceehhhhhcCCCCCCEEEcC
Confidence 334445555555332 22 222 3445555555 5555554442223345555555555554
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.38 E-value=0.019 Score=42.16 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=20.4
Q ss_pred eecCCCccc-cccCccccCCCCCCeEecCCCcCCc
Q 039201 173 TEKSKNRFT-GKLGIDFNSLINLARLNLGQKNLGI 206 (258)
Q Consensus 173 L~l~~n~~~-g~ip~~~~~l~~L~~L~ls~N~l~g 206 (258)
++.++++++ ..+|..+ -++|++|+|++|.|+.
T Consensus 13 v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~ 45 (130)
T 3rfe_A 13 VDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTA 45 (130)
T ss_dssp EECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSS
T ss_pred EEeCCCCCccccCCCCC--CcCCCEEECCCCcCCc
Confidence 666777765 3566533 2357777777777765
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.36 E-value=0.092 Score=45.19 Aligned_cols=106 Identities=9% Similarity=0.011 Sum_probs=68.9
Q ss_pred cCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEcCCCccCCCCCcccCCCCCCCEEEccccccccccc--cccCCCCc
Q 039201 89 FVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLIGGYRLGGKIPESLGQLGSINYLILAENNFSGTLR--SIFNISSL 166 (258)
Q Consensus 89 ~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p--~~~~l~~L 166 (258)
.+.....|+.+.+..+ ++.--...+.++.+|+.+.-.+.+...-...+.++.+|+.+.+.++.++ .++ .+.++++|
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L 312 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKL 312 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTC
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhccccccccceeccccccccccccccccccccccc-eehhhhhcCCCCC
Confidence 4455666666666544 2211123455677777776333343222245788999999999988887 455 78899999
Q ss_pred ceecceeecCCCcccccc-CccccCCCCCCeEecCCC
Q 039201 167 EFQSSETEKSKNRFTGKL-GIDFNSLINLARLNLGQK 202 (258)
Q Consensus 167 ~~l~l~L~l~~n~~~g~i-p~~~~~l~~L~~L~ls~N 202 (258)
+. +.+..+ ++ .| ...+.++++|+.+.+..+
T Consensus 313 ~~----i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 313 SS----VTLPTA-LK-TIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CE----EECCTT-CC-EECTTTTTTCTTCCCCCCCTT
T ss_pred CE----EEcCcc-cc-EEHHHHhhCCCCCCEEEECCc
Confidence 99 877654 44 34 345778889998887543
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.12 E-value=0.0062 Score=48.18 Aligned_cols=110 Identities=12% Similarity=0.005 Sum_probs=49.0
Q ss_pred CCCCCEEEcccc-cccc----ccc-cccCCCCcceecceeecCCCccccc----cCccccCCCCCCeEecCCCcCCccCC
Q 039201 140 LGSINYLILAEN-NFSG----TLR-SIFNISSLEFQSSETEKSKNRFTGK----LGIDFNSLINLARLNLGQKNLGIGTT 209 (258)
Q Consensus 140 l~~L~~L~L~~n-~l~g----~~p-~~~~l~~L~~l~l~L~l~~n~~~g~----ip~~~~~l~~L~~L~ls~N~l~g~~p 209 (258)
-+.|++|+|++| ++.. .+- .+..-+.|+. |+|++|++... +...+..-+.|++|+|+.|.+.+.-
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~----L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G- 114 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEK----FSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL- 114 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCE----EECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH-
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCE----EEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH-
Confidence 345555666553 4431 111 3334455555 55566655422 2222333445666666666654320
Q ss_pred CCchhhhhhcCCCCCccc--ccc---cccc----ccchhhcCCCCCCeEeccCCc
Q 039201 210 SDLDFITLLRNCSKLKTL--QYN---QLTG----TIPDTTGELRNLQAPDLSENN 255 (258)
Q Consensus 210 ~~~~~~~~l~~l~~L~~L--~~N---~l~g----~ip~~l~~l~~L~~L~Ls~N~ 255 (258)
...+...+..-+.|+.| ++| .+.. .+-+.+..-+.|+.|+++.|.
T Consensus 115 -a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 115 -LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp -HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred -HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 00112233333445544 222 2221 133334444567777776654
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.34 E-value=0.088 Score=41.50 Aligned_cols=90 Identities=13% Similarity=0.108 Sum_probs=63.0
Q ss_pred cccCCCCcceecceeecCCC-ccccc----cCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccc
Q 039201 159 SIFNISSLEFQSSETEKSKN-RFTGK----LGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQ 231 (258)
Q Consensus 159 ~~~~l~~L~~l~l~L~l~~n-~~~g~----ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~ 231 (258)
.+.+-+.|++ |+|++| ++... +-..+..-+.|+.|+|++|.+...-- ..+...+..-+.|+.| +.|+
T Consensus 36 ll~~n~~L~~----L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga--~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 36 LREDDTDLKE----VNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEA--RGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HHTTCSSCCE----EECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHH--TTHHHHHHHCSSCCEEECCSSB
T ss_pred HHhcCCCccE----EECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHH--HHHHHHHhcCCccCeEecCCCc
Confidence 3456678999 899885 66422 44556667899999999999975311 1144556666778887 8999
Q ss_pred cccc----cchhhcCCCCCCeEeccCC
Q 039201 232 LTGT----IPDTTGELRNLQAPDLSEN 254 (258)
Q Consensus 232 l~g~----ip~~l~~l~~L~~L~Ls~N 254 (258)
+... +-+.+..-..|+.|+|++|
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 9853 3344555577999999865
Done!