BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039203
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The
Archaeon Pyrococcus Horikoshii Reveals A Novel Editing
Domain Orientation
Length = 810
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 10 SKGALFDEYDGLEEGGLKASSSYSSGIDEHDND 42
SKG + + D +EE G Y + EHD+D
Sbjct: 654 SKGNVLNFIDAIEENGADVVRLYIMSLAEHDSD 686
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
pdb|1WZ2|B Chain B, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
Length = 967
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 10 SKGALFDEYDGLEEGGLKASSSYSSGIDEHDND 42
SKG + + D +EE G Y + EHD+D
Sbjct: 654 SKGNVLNFIDAIEENGADVVRLYIMSLAEHDSD 686
>pdb|3E57|A Chain A, Crystal Structure Of Tm1382, A Putative Nudix Hydrolase
pdb|3E57|B Chain B, Crystal Structure Of Tm1382, A Putative Nudix Hydrolase
Length = 211
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 32 YSSGIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMG 77
YS GI H + DG R FLK L +++EEV+ R L+ +G
Sbjct: 99 YSLGIGGHVREG--DGATPREAFLKGLEREVNEEVDVSLRELEFLG 142
>pdb|2CBI|A Chain A, Structure Of The Clostridium Perfringens Nagj Family 84
Glycoside Hydrolase, A Homologue Of Human O-Glcnacase
pdb|2CBI|B Chain B, Structure Of The Clostridium Perfringens Nagj Family 84
Glycoside Hydrolase, A Homologue Of Human O-Glcnacase
pdb|2CBJ|A Chain A, Structure Of The Clostridium Perfringens Nagj Family 84
Glycoside Hydrolase, A Homologue Of Human O-Glcnacase In
Complex With Pugnac
pdb|2CBJ|B Chain B, Structure Of The Clostridium Perfringens Nagj Family 84
Glycoside Hydrolase, A Homologue Of Human O-Glcnacase In
Complex With Pugnac
pdb|2V5C|A Chain A, Family 84 Glycoside Hydrolase From Clostridium
Perfringens, 2.1 Angstrom Structure
pdb|2V5C|B Chain B, Family 84 Glycoside Hydrolase From Clostridium
Perfringens, 2.1 Angstrom Structure
pdb|2VUR|A Chain A, Chemical Dissection Of The Link Between Streptozotocin, O-
Glcnac And Pancreatic Cell Death
pdb|2VUR|B Chain B, Chemical Dissection Of The Link Between Streptozotocin, O-
Glcnac And Pancreatic Cell Death
pdb|2X0Y|A Chain A, Screening-Based Discovery Of Drug-Like O-Glcnacase
Inhibitor Scaffolds
pdb|2X0Y|B Chain B, Screening-Based Discovery Of Drug-Like O-Glcnacase
Inhibitor Scaffolds
Length = 594
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 17 EYDGLEEGGLKASSSYSSGIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRM 76
E+ L + + ++ YS +D +D DKA + RA+ + L GD+ E+++ RM
Sbjct: 402 EHAELSKISIHTAADYSWNMDNYDYDKAWN----RAIDM--LYGDLAEDMKVFANHSTRM 455
Query: 77 GNSMDASRGIMSGTMDRFKM 96
N A G R KM
Sbjct: 456 DNKTWAKSGREDAPELRAKM 475
>pdb|2XPK|A Chain A, Cell-Penetrant, Nanomolar O-Glcnacase Inhibitors Selective
Against Lysosomal Hexosaminidases
pdb|2XPK|B Chain B, Cell-Penetrant, Nanomolar O-Glcnacase Inhibitors Selective
Against Lysosomal Hexosaminidases
Length = 594
Score = 25.8 bits (55), Expect = 6.7, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 17 EYDGLEEGGLKASSSYSSGIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRM 76
E+ L + + ++ YS +D +D DKA + RA+ + L GD+ E+++ RM
Sbjct: 402 EHAELSKISIHTAADYSWNMDNYDYDKAWN----RAIDM--LYGDLAEDMKVFANHSTRM 455
Query: 77 GNSMDASRGIMSGTMDRFKM 96
N A G R KM
Sbjct: 456 DNKTWAKSGREDAPELRAKM 475
>pdb|2J62|A Chain A, Structure Of A Bacterial O-glcnacase In Complex With
Glcnacstatin
pdb|2J62|B Chain B, Structure Of A Bacterial O-glcnacase In Complex With
Glcnacstatin
pdb|2WB5|A Chain A, Glcnacstatins Are Nanomolar Inhibitors Of Human
O-Glcnacase Inducing Cellular Hyper-O-Glcnacylation
pdb|2WB5|B Chain B, Glcnacstatins Are Nanomolar Inhibitors Of Human
O-Glcnacase Inducing Cellular Hyper-O-Glcnacylation
Length = 594
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 17 EYDGLEEGGLKASSSYSSGIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRM 76
E+ L + + ++ YS +D +D DKA + RA+ + L GD+ E+++ RM
Sbjct: 402 EHAELSKISIHTAADYSWNMDNYDYDKAWN----RAIDM--LYGDLAEDMKVFANHSTRM 455
Query: 77 GNSMDASRGIMSGTMDRFKM 96
N A G R KM
Sbjct: 456 DNKTWAKSGREDAPELRAKM 475
>pdb|2YDQ|A Chain A, Cpoga D298n In Complex With Hoga-Derived O-Glcnac Peptide
pdb|2YDR|A Chain A, Cpoga D298n In Complex With P53-Derived O-Glcnac Peptide
pdb|2YDS|A Chain A, Cpoga D298n In Complex With Tab1-Derived O-Glcnac Peptide
Length = 590
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 17 EYDGLEEGGLKASSSYSSGIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRM 76
E+ L + + ++ YS +D +D DKA + RA+ + L GD+ E+++ RM
Sbjct: 404 EHAELSKISIHTAADYSWNMDNYDYDKAWN----RAIDM--LYGDLAEDMKVFANHSTRM 457
Query: 77 GNSMDASRGIMSGTMDRFKM 96
N A G R KM
Sbjct: 458 DNKTWAKSGREDAPELRAKM 477
>pdb|2V5D|A Chain A, Structure Of A Family 84 Glycoside Hydrolase And A Family
32 Carbohydrate-Binding Module In Tandem From
Clostridium Perfringens
Length = 737
Score = 25.4 bits (54), Expect = 7.8, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 17 EYDGLEEGGLKASSSYSSGIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRM 76
E+ L + + ++ YS +D +D DKA + RA+ + L GD+ E+++ RM
Sbjct: 402 EHAELSKISIHTAADYSWNMDNYDYDKAWN----RAIDM--LYGDLAEDMKVFANHSTRM 455
Query: 77 GNSMDASRGIMSGTMDRFKM 96
N A G R KM
Sbjct: 456 DNKTWAKSGREDAPELRAKM 475
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,199,955
Number of Sequences: 62578
Number of extensions: 116703
Number of successful extensions: 292
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 288
Number of HSP's gapped (non-prelim): 17
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)