Query 039203
Match_columns 125
No_of_seqs 117 out of 816
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 07:19:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039203.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039203hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3385 V-SNARE [Intracellular 100.0 1.6E-30 3.4E-35 180.1 9.1 117 9-125 2-118 (118)
2 KOG3202 SNARE protein TLG1/Syn 99.8 1.6E-19 3.5E-24 139.6 11.7 114 10-123 110-233 (235)
3 PF05739 SNARE: SNARE domain; 99.5 6.5E-13 1.4E-17 82.7 9.0 61 40-100 1-61 (63)
4 cd00193 t_SNARE Soluble NSF (N 99.2 9.1E-11 2E-15 71.4 7.0 59 38-96 1-59 (60)
5 PF09753 Use1: Membrane fusion 99.1 7.2E-10 1.6E-14 86.3 11.4 90 36-125 160-249 (251)
6 smart00397 t_SNARE Helical reg 99.1 6E-10 1.3E-14 68.8 7.7 62 35-96 4-65 (66)
7 KOG3065 SNAP-25 (synaptosome-a 99.0 1.1E-09 2.3E-14 86.7 8.7 64 35-98 210-273 (273)
8 KOG0810 SNARE protein Syntaxin 98.5 1.2E-06 2.7E-11 70.2 10.0 56 44-99 207-262 (297)
9 COG5325 t-SNARE complex subuni 98.4 3.7E-06 8E-11 66.5 10.4 88 35-122 187-277 (283)
10 KOG0812 SNARE protein SED5/Syn 98.3 7E-06 1.5E-10 65.4 10.4 80 45-124 229-309 (311)
11 KOG0811 SNARE protein PEP12/VA 98.3 1.4E-05 2.9E-10 63.4 11.2 77 39-115 176-254 (269)
12 KOG0809 SNARE protein TLG2/Syn 98.2 1.2E-05 2.5E-10 64.3 9.8 85 39-123 214-299 (305)
13 COG5074 t-SNARE complex subuni 98.1 3.2E-05 6.9E-10 60.3 9.3 78 44-121 186-267 (280)
14 PF03908 Sec20: Sec20; InterP 98.0 0.00012 2.5E-09 49.0 10.3 82 44-125 9-90 (92)
15 KOG2678 Predicted membrane pro 97.9 8.3E-05 1.8E-09 57.5 8.9 85 41-125 153-238 (244)
16 KOG3208 SNARE protein GS28 [In 97.4 0.0021 4.6E-08 49.6 9.7 87 35-123 142-230 (231)
17 PF00957 Synaptobrevin: Synapt 97.1 0.0083 1.8E-07 39.4 8.8 58 42-99 2-62 (89)
18 KOG3251 Golgi SNAP receptor co 97.0 0.0039 8.5E-08 47.9 7.7 65 35-100 122-186 (213)
19 PF12352 V-SNARE_C: Snare regi 96.7 0.035 7.6E-07 34.4 8.8 64 36-100 2-65 (66)
20 KOG1666 V-SNARE [Intracellular 96.6 0.016 3.4E-07 44.7 8.3 68 57-124 149-219 (220)
21 PF00957 Synaptobrevin: Synapt 96.5 0.037 8E-07 36.3 8.4 55 36-91 7-61 (89)
22 KOG0860 Synaptobrevin/VAMP-lik 96.1 0.14 3.1E-06 35.9 10.1 52 35-97 32-86 (116)
23 KOG3894 SNARE protein Syntaxin 96.1 0.1 2.2E-06 42.3 10.3 111 12-122 189-311 (316)
24 PF10779 XhlA: Haemolysin XhlA 95.8 0.11 2.4E-06 33.1 7.8 61 62-125 11-71 (71)
25 PF09753 Use1: Membrane fusion 95.8 0.44 9.5E-06 37.0 12.6 83 39-124 159-245 (251)
26 KOG0860 Synaptobrevin/VAMP-lik 95.4 0.23 5E-06 34.9 8.8 21 76-97 59-79 (116)
27 PF05957 DUF883: Bacterial pro 93.8 1.3 2.7E-05 29.3 10.4 52 36-87 2-54 (94)
28 PF01519 DUF16: Protein of unk 92.1 1.2 2.7E-05 30.5 7.1 50 40-89 50-99 (102)
29 PRK00846 hypothetical protein; 91.3 2 4.3E-05 28.1 7.2 52 39-90 9-60 (77)
30 PF04102 SlyX: SlyX; InterPro 91.2 2 4.3E-05 27.1 7.0 51 41-91 2-52 (69)
31 PF07798 DUF1640: Protein of u 90.4 4.4 9.6E-05 29.9 9.3 33 61-93 117-149 (177)
32 PF07889 DUF1664: Protein of u 90.1 3.3 7.1E-05 29.4 8.0 60 39-98 64-123 (126)
33 PRK00736 hypothetical protein; 89.7 3 6.4E-05 26.4 6.8 48 42-89 4-51 (68)
34 KOG0811 SNARE protein PEP12/VA 89.5 5.6 0.00012 31.7 9.8 85 38-123 182-266 (269)
35 PRK10884 SH3 domain-containing 89.1 6.4 0.00014 30.1 9.5 62 36-97 97-158 (206)
36 PF15188 CCDC-167: Coiled-coil 89.0 5 0.00011 26.7 7.9 76 44-121 6-84 (85)
37 PRK04325 hypothetical protein; 88.7 4.3 9.3E-05 26.0 7.2 49 41-89 7-55 (74)
38 KOG0862 Synaptobrevin/VAMP-lik 88.2 3.4 7.3E-05 32.0 7.5 64 59-123 151-214 (216)
39 PRK00295 hypothetical protein; 88.2 4.4 9.6E-05 25.6 6.9 48 42-89 4-51 (68)
40 PRK02119 hypothetical protein; 87.7 5.5 0.00012 25.5 7.3 51 39-89 5-55 (73)
41 PRK02793 phi X174 lysis protei 87.3 5.7 0.00012 25.3 7.1 49 41-89 6-54 (72)
42 PF08372 PRT_C: Plant phosphor 87.0 8.3 0.00018 28.4 8.6 38 43-87 52-89 (156)
43 PRK04406 hypothetical protein; 86.8 6.4 0.00014 25.4 7.3 50 40-89 8-57 (75)
44 KOG3202 SNARE protein TLG1/Syn 86.7 1.5 3.3E-05 34.3 4.8 46 78-123 180-229 (235)
45 TIGR00383 corA magnesium Mg(2+ 86.4 5.3 0.00012 31.5 8.0 49 43-97 216-264 (318)
46 PF05531 NPV_P10: Nucleopolyhe 86.1 2.9 6.3E-05 27.2 5.2 50 39-88 14-66 (75)
47 PF07798 DUF1640: Protein of u 85.8 12 0.00026 27.6 9.8 65 39-103 87-152 (177)
48 PF11166 DUF2951: Protein of u 84.8 10 0.00022 25.8 8.8 46 39-84 7-52 (98)
49 PF04210 MtrG: Tetrahydrometha 84.7 3.3 7.2E-05 26.5 4.8 51 66-123 14-66 (70)
50 KOG1666 V-SNARE [Intracellular 83.2 3.9 8.4E-05 31.7 5.6 29 72-100 154-185 (220)
51 COG2900 SlyX Uncharacterized p 82.9 10 0.00022 24.4 7.1 50 39-88 4-53 (72)
52 PF15106 TMEM156: TMEM156 prot 82.1 0.89 1.9E-05 35.1 1.8 20 106-125 177-196 (226)
53 COG5074 t-SNARE complex subuni 80.8 20 0.00042 28.5 8.7 74 38-118 194-268 (280)
54 TIGR01149 mtrG N5-methyltetrah 80.1 7 0.00015 25.0 5.0 23 65-87 13-35 (70)
55 COG4575 ElaB Uncharacterized c 79.2 18 0.00039 24.9 10.1 81 35-115 11-93 (104)
56 KOG0810 SNARE protein Syntaxin 78.5 23 0.00049 28.7 8.8 17 106-122 273-289 (297)
57 PHA02650 hypothetical protein; 77.5 1.7 3.7E-05 28.5 1.7 15 75-89 15-29 (81)
58 PRK09973 putative outer membra 76.5 18 0.00039 24.1 6.4 30 44-73 25-54 (85)
59 PF04568 IATP: Mitochondrial A 75.8 4.9 0.00011 27.5 3.7 29 53-81 72-100 (100)
60 PRK01026 tetrahydromethanopter 75.5 11 0.00024 24.6 5.1 22 66-87 17-38 (77)
61 KOG3385 V-SNARE [Intracellular 74.8 27 0.00058 24.6 10.9 110 11-124 1-114 (118)
62 PF03908 Sec20: Sec20; InterP 74.7 21 0.00045 23.4 8.5 17 105-121 73-89 (92)
63 PF03904 DUF334: Domain of unk 73.7 41 0.00089 26.3 10.6 46 38-83 63-109 (230)
64 cd00179 SynN Syntaxin N-termin 72.1 24 0.00053 24.5 6.8 61 39-99 9-69 (151)
65 PF04639 Baculo_E56: Baculovir 71.6 1.8 4E-05 34.9 0.9 20 106-125 280-299 (305)
66 PHA02819 hypothetical protein; 70.8 2.4 5.2E-05 27.2 1.1 21 73-93 13-33 (71)
67 PF04728 LPP: Lipoprotein leuc 70.7 22 0.00047 21.8 6.2 33 44-76 18-50 (56)
68 PHA03054 IMV membrane protein; 70.7 2.5 5.5E-05 27.2 1.2 14 77-90 17-30 (72)
69 PF04728 LPP: Lipoprotein leuc 69.6 23 0.0005 21.7 7.2 49 43-98 3-51 (56)
70 PF13800 Sigma_reg_N: Sigma fa 68.5 2.8 6.1E-05 27.7 1.2 10 96-105 3-12 (96)
71 PRK13455 F0F1 ATP synthase sub 67.9 4.2 9E-05 30.0 2.1 19 106-124 30-48 (184)
72 PHA02844 putative transmembran 67.7 8.6 0.00019 25.0 3.2 12 76-87 16-27 (75)
73 PRK15396 murein lipoprotein; P 67.3 32 0.00069 22.4 6.3 26 50-75 46-71 (78)
74 PHA03386 P10 fibrous body prot 67.1 19 0.00041 24.4 4.9 46 39-88 15-60 (94)
75 PHA02975 hypothetical protein; 65.8 10 0.00022 24.2 3.2 8 77-84 17-24 (69)
76 PF13747 DUF4164: Domain of un 65.6 36 0.00079 22.5 7.4 37 62-98 51-87 (89)
77 PF08614 ATG16: Autophagy prot 65.4 54 0.0012 24.3 8.5 61 39-99 112-172 (194)
78 PF09451 ATG27: Autophagy-rela 65.4 4.8 0.0001 31.6 2.1 21 104-124 200-220 (268)
79 PF01102 Glycophorin_A: Glycop 65.0 4.4 9.6E-05 28.6 1.7 8 116-123 81-88 (122)
80 PHA03395 p10 fibrous body prot 64.9 24 0.00052 23.6 5.0 49 39-87 14-65 (87)
81 PHA02692 hypothetical protein; 64.7 12 0.00027 24.0 3.5 14 77-90 17-30 (70)
82 COG5325 t-SNARE complex subuni 64.3 58 0.0013 26.2 8.0 78 46-123 191-275 (283)
83 PRK11637 AmiB activator; Provi 64.1 82 0.0018 26.2 9.3 39 61-99 93-131 (428)
84 PF10831 DUF2556: Protein of u 63.7 6.7 0.00014 23.4 2.0 16 104-119 3-18 (53)
85 PF03904 DUF334: Domain of unk 63.4 71 0.0015 25.0 9.8 21 35-55 67-87 (230)
86 PF12575 DUF3753: Protein of u 63.3 8.4 0.00018 24.9 2.5 15 76-90 16-30 (72)
87 PF14523 Syntaxin_2: Syntaxin- 63.2 35 0.00075 22.2 5.7 56 43-99 3-58 (102)
88 PF02009 Rifin_STEVOR: Rifin/s 63.0 5.9 0.00013 32.0 2.2 17 109-125 264-280 (299)
89 PRK10132 hypothetical protein; 62.7 48 0.001 22.8 10.5 54 35-88 8-62 (108)
90 KOG0812 SNARE protein SED5/Syn 62.6 73 0.0016 25.9 8.2 15 108-122 290-304 (311)
91 PF15183 MRAP: Melanocortin-2 62.4 7.4 0.00016 26.0 2.2 16 109-124 46-61 (90)
92 PF03302 VSP: Giardia variant- 61.8 4.8 0.0001 33.5 1.6 16 110-125 379-394 (397)
93 PRK09174 F0F1 ATP synthase sub 61.3 7 0.00015 29.7 2.3 14 110-123 56-69 (204)
94 PRK10884 SH3 domain-containing 61.3 71 0.0015 24.4 9.5 20 39-58 114-133 (206)
95 KOG3251 Golgi SNAP receptor co 61.2 75 0.0016 24.6 8.1 13 88-100 177-189 (213)
96 PF00523 Fusion_gly: Fusion gl 60.5 4.5 9.7E-05 34.9 1.2 26 73-98 440-465 (490)
97 PRK13454 F0F1 ATP synthase sub 60.2 7.6 0.00016 28.8 2.2 16 109-124 38-53 (181)
98 PRK13454 F0F1 ATP synthase sub 59.8 7 0.00015 29.0 2.0 17 108-124 32-48 (181)
99 PF02646 RmuC: RmuC family; I 59.7 79 0.0017 25.3 8.1 23 85-107 51-73 (304)
100 PF06143 Baculo_11_kDa: Baculo 59.5 8.7 0.00019 25.5 2.2 10 106-115 40-49 (84)
101 PF05568 ASFV_J13L: African sw 58.8 6.6 0.00014 29.0 1.7 18 104-121 29-46 (189)
102 PRK04654 sec-independent trans 58.7 84 0.0018 24.4 8.0 54 43-96 27-86 (214)
103 PF03670 UPF0184: Uncharacteri 58.4 34 0.00073 22.7 4.8 30 70-99 32-61 (83)
104 KOG2546 Abl interactor ABI-1, 58.4 13 0.00029 31.7 3.6 93 5-97 12-109 (483)
105 KOG0859 Synaptobrevin/VAMP-lik 58.4 34 0.00073 26.4 5.5 13 46-58 128-140 (217)
106 PF09548 Spore_III_AB: Stage I 58.1 67 0.0014 23.4 7.0 61 53-122 108-169 (170)
107 PF05393 Hum_adeno_E3A: Human 57.9 10 0.00022 25.5 2.3 18 106-123 35-53 (94)
108 PF11395 DUF2873: Protein of u 57.7 14 0.00031 21.0 2.5 13 111-123 18-30 (43)
109 smart00503 SynN Syntaxin N-ter 57.3 53 0.0011 21.6 6.8 59 39-97 11-69 (117)
110 PF01601 Corona_S2: Coronaviru 56.8 4.5 9.8E-05 35.7 0.6 44 37-80 482-531 (610)
111 PRK11637 AmiB activator; Provi 56.5 1.2E+02 0.0025 25.3 9.0 33 65-97 90-122 (428)
112 PHA03240 envelope glycoprotein 56.2 9.9 0.00021 29.7 2.3 16 106-121 214-229 (258)
113 PRK05585 yajC preprotein trans 56.1 11 0.00025 25.8 2.4 18 107-124 18-35 (106)
114 PF06692 MNSV_P7B: Melon necro 55.9 13 0.00027 23.0 2.3 17 107-123 16-32 (61)
115 CHL00019 atpF ATP synthase CF0 54.9 11 0.00024 27.8 2.3 17 109-125 31-47 (184)
116 PF10717 ODV-E18: Occlusion-de 54.5 12 0.00026 24.8 2.2 15 107-121 27-41 (85)
117 PF10256 Erf4: Golgin subfamil 54.3 32 0.0007 23.3 4.5 20 85-104 33-52 (118)
118 KOG2678 Predicted membrane pro 54.2 1.1E+02 0.0023 24.2 9.1 58 37-98 145-203 (244)
119 PF00015 MCPsignal: Methyl-acc 54.0 80 0.0017 22.7 7.6 54 44-97 101-154 (213)
120 COG4064 MtrG Tetrahydromethano 53.9 57 0.0012 21.0 5.6 23 64-86 15-37 (75)
121 PF05440 MtrB: Tetrahydrometha 53.5 7.9 0.00017 26.4 1.3 32 62-93 35-66 (97)
122 PF07889 DUF1664: Protein of u 53.5 78 0.0017 22.4 6.7 57 41-97 48-108 (126)
123 COG4942 Membrane-bound metallo 53.4 1.4E+02 0.003 25.5 8.8 58 40-97 42-99 (420)
124 PF00261 Tropomyosin: Tropomyo 53.3 88 0.0019 23.9 7.2 57 44-100 16-72 (237)
125 PF01544 CorA: CorA-like Mg2+ 51.7 1E+02 0.0022 23.3 10.1 48 44-97 193-240 (292)
126 PF05791 Bacillus_HBL: Bacillu 51.0 99 0.0021 22.9 8.4 62 41-102 101-162 (184)
127 PF02970 TBCA: Tubulin binding 50.9 69 0.0015 21.1 6.1 54 47-101 25-78 (90)
128 smart00502 BBC B-Box C-termina 50.5 69 0.0015 20.9 7.7 41 60-100 49-90 (127)
129 PHA02675 ORF104 fusion protein 50.3 74 0.0016 21.2 7.5 49 47-95 34-82 (90)
130 PHA02967 hypothetical protein; 50.3 15 0.00032 26.2 2.2 20 106-125 28-47 (128)
131 PRK09973 putative outer membra 50.2 73 0.0016 21.1 5.8 39 39-77 34-72 (85)
132 PRK09546 zntB zinc transporter 50.1 1.3E+02 0.0028 23.9 10.6 16 110-125 304-319 (324)
133 KOG2991 Splicing regulator [RN 49.7 1.4E+02 0.003 24.2 8.0 65 35-99 220-299 (330)
134 TIGR01477 RIFIN variant surfac 49.4 15 0.00032 30.5 2.5 17 109-125 318-334 (353)
135 PF12495 Vip3A_N: Vegetative i 49.1 51 0.0011 23.8 4.9 42 57-98 73-114 (177)
136 PF04880 NUDE_C: NUDE protein, 49.0 11 0.00025 27.9 1.6 39 35-74 17-55 (166)
137 PF05478 Prominin: Prominin; 48.6 1.2E+02 0.0026 27.6 8.3 15 55-69 362-376 (806)
138 TIGR01478 STEVOR variant surfa 48.4 17 0.00038 29.4 2.6 13 112-124 270-282 (295)
139 COG4420 Predicted membrane pro 48.4 66 0.0014 24.5 5.6 39 60-98 17-55 (191)
140 PTZ00382 Variant-specific surf 48.4 8 0.00017 26.0 0.6 8 116-123 84-91 (96)
141 PF04912 Dynamitin: Dynamitin 48.3 1.3E+02 0.0027 24.9 7.8 33 60-92 346-378 (388)
142 PTZ00370 STEVOR; Provisional 48.2 18 0.00038 29.4 2.6 13 112-124 266-278 (296)
143 PTZ00046 rifin; Provisional 47.5 17 0.00036 30.3 2.5 17 109-125 323-339 (358)
144 KOG1690 emp24/gp25L/p24 family 47.4 1.3E+02 0.0028 23.2 8.7 70 35-122 131-200 (215)
145 PRK08475 F0F1 ATP synthase sub 47.3 13 0.00029 27.1 1.7 20 106-125 26-45 (167)
146 PF12718 Tropomyosin_1: Tropom 47.1 1E+02 0.0022 22.0 7.4 57 44-100 50-109 (143)
147 PHA02689 ORF051 putative membr 47.0 16 0.00034 26.1 1.9 20 106-125 30-50 (128)
148 KOG2825 Putative arsenite-tran 46.1 54 0.0012 26.6 5.0 76 46-121 164-239 (323)
149 PF13150 DUF3989: Protein of u 45.9 23 0.00049 23.4 2.5 32 93-124 14-47 (85)
150 PRK07352 F0F1 ATP synthase sub 45.9 17 0.00037 26.5 2.1 18 108-125 25-42 (174)
151 PF06738 DUF1212: Protein of u 45.4 76 0.0016 23.1 5.6 30 72-101 69-98 (193)
152 COG0598 CorA Mg2+ and Co2+ tra 44.1 1.6E+02 0.0036 23.4 9.7 11 85-95 256-266 (322)
153 PF06679 DUF1180: Protein of u 43.9 20 0.00042 26.6 2.2 16 110-125 100-115 (163)
154 PF06120 Phage_HK97_TLTM: Tail 43.8 1.4E+02 0.003 24.3 7.1 35 55-89 72-106 (301)
155 PF15012 DUF4519: Domain of un 43.5 11 0.00024 23.1 0.7 14 111-124 38-51 (56)
156 PF05791 Bacillus_HBL: Bacillu 42.8 1.4E+02 0.003 22.1 6.6 51 38-88 130-180 (184)
157 PF01519 DUF16: Protein of unk 42.7 1.1E+02 0.0024 21.0 8.3 55 39-94 33-90 (102)
158 PRK06231 F0F1 ATP synthase sub 42.6 20 0.00044 27.1 2.1 17 109-125 55-71 (205)
159 PF01105 EMP24_GP25L: emp24/gp 42.6 8.2 0.00018 27.1 0.0 9 103-111 154-162 (183)
160 COG3883 Uncharacterized protei 42.6 1.8E+02 0.0038 23.3 8.2 37 55-91 57-93 (265)
161 PF07097 DUF1359: Protein of u 42.5 90 0.002 21.0 5.0 38 42-79 8-45 (102)
162 PF01034 Syndecan: Syndecan do 42.5 8.2 0.00018 24.3 0.0 7 116-122 26-32 (64)
163 PRK09174 F0F1 ATP synthase sub 42.4 18 0.0004 27.4 1.9 19 106-124 57-75 (204)
164 PF05103 DivIVA: DivIVA protei 42.2 26 0.00056 23.9 2.5 49 39-87 21-69 (131)
165 PRK02793 phi X174 lysis protei 41.3 91 0.002 19.7 5.6 38 61-98 12-49 (72)
166 PF10183 ESSS: ESSS subunit of 41.3 24 0.00052 24.0 2.2 20 106-125 62-81 (105)
167 PF07195 FliD_C: Flagellar hoo 41.3 1.4E+02 0.003 22.8 6.6 65 36-100 171-236 (239)
168 PF05546 She9_MDM33: She9 / Md 41.2 1.3E+02 0.0028 23.2 6.3 23 102-124 151-173 (207)
169 PF05399 EVI2A: Ectropic viral 40.9 29 0.00063 27.0 2.8 9 105-113 127-135 (227)
170 PF05545 FixQ: Cbb3-type cytoc 40.9 28 0.0006 20.2 2.1 15 109-123 16-30 (49)
171 PHA03164 hypothetical protein; 40.8 24 0.00053 23.1 2.0 9 114-122 72-80 (88)
172 PF15030 DUF4527: Protein of u 40.5 1.9E+02 0.0041 23.1 7.6 55 46-100 12-66 (277)
173 PF10498 IFT57: Intra-flagella 40.4 1.2E+02 0.0025 25.2 6.4 56 45-100 289-346 (359)
174 PF08172 CASP_C: CASP C termin 39.7 42 0.0009 26.4 3.5 18 106-123 223-240 (248)
175 PF05263 DUF722: Protein of un 39.2 1.3E+02 0.0028 21.4 5.7 33 24-56 38-76 (130)
176 PF11190 DUF2976: Protein of u 39.0 50 0.0011 22.0 3.3 17 108-124 66-82 (87)
177 PF10661 EssA: WXG100 protein 38.8 1.3E+02 0.0028 21.7 5.7 25 45-69 48-72 (145)
178 PF06084 Cytomega_TRL10: Cytom 38.5 11 0.00025 26.7 0.2 11 111-121 70-80 (150)
179 PF05283 MGC-24: Multi-glycosy 38.4 27 0.00059 26.4 2.2 16 110-125 167-182 (186)
180 PHA02955 hypothetical protein; 38.4 31 0.00067 26.7 2.6 12 113-124 189-200 (213)
181 CHL00118 atpG ATP synthase CF0 38.2 24 0.00053 25.3 1.9 19 107-125 27-45 (156)
182 PF06682 DUF1183: Protein of u 38.1 26 0.00056 28.7 2.2 18 106-123 158-175 (318)
183 PRK10856 cytoskeletal protein 37.8 24 0.00052 28.8 2.0 17 107-123 117-133 (331)
184 PRK01026 tetrahydromethanopter 37.6 1.2E+02 0.0025 19.8 5.6 41 73-113 17-59 (77)
185 PF00261 Tropomyosin: Tropomyo 37.3 1.9E+02 0.0041 22.1 7.4 60 39-98 88-147 (237)
186 KOG0946 ER-Golgi vesicle-tethe 37.2 1.8E+02 0.0038 27.3 7.3 64 36-99 664-727 (970)
187 PF11932 DUF3450: Protein of u 37.1 1.9E+02 0.0041 22.2 8.9 40 45-84 58-97 (251)
188 PF09577 Spore_YpjB: Sporulati 36.8 1.7E+02 0.0038 22.8 6.6 11 73-83 176-186 (232)
189 PF00804 Syntaxin: Syntaxin; 36.6 1.1E+02 0.0024 19.2 6.1 29 39-67 10-38 (103)
190 COG4736 CcoQ Cbb3-type cytochr 36.5 42 0.00091 20.8 2.5 15 110-124 16-30 (60)
191 PRK11085 magnesium/nickel/coba 36.3 2.3E+02 0.005 22.9 8.8 10 86-95 251-260 (316)
192 PF14257 DUF4349: Domain of un 36.3 1.5E+02 0.0032 22.8 6.2 18 40-57 136-153 (262)
193 PF06013 WXG100: Proteins of 1 36.2 97 0.0021 18.5 8.0 32 46-77 7-38 (86)
194 PF14362 DUF4407: Domain of un 36.2 2.1E+02 0.0046 22.4 10.5 16 85-100 242-257 (301)
195 KOG4331 Polytopic membrane pro 36.1 88 0.0019 29.0 5.4 48 35-82 349-397 (865)
196 PHA03072 putative viral membra 35.9 47 0.001 25.1 3.1 37 86-122 12-48 (190)
197 PRK01919 tatB sec-independent 35.8 1.9E+02 0.004 21.7 8.0 29 43-71 27-55 (169)
198 PF14715 FixP_N: N-terminal do 35.7 37 0.0008 20.3 2.1 18 106-123 23-40 (51)
199 PRK00295 hypothetical protein; 35.6 1.1E+02 0.0024 19.0 5.6 36 62-97 10-45 (68)
200 PRK00736 hypothetical protein; 35.5 1.1E+02 0.0024 19.0 5.6 37 62-98 10-46 (68)
201 KOG2196 Nuclear porin [Nuclear 35.5 1.6E+02 0.0034 23.4 6.1 32 40-71 110-141 (254)
202 TIGR02833 spore_III_AB stage I 35.5 1.2E+02 0.0026 22.2 5.3 62 52-122 107-169 (170)
203 PF12420 DUF3671: Protein of u 35.4 40 0.00086 23.0 2.5 17 81-97 24-40 (104)
204 PF02646 RmuC: RmuC family; I 35.2 2.3E+02 0.005 22.6 7.6 34 55-88 238-271 (304)
205 PRK01770 sec-independent trans 35.0 1.9E+02 0.0042 21.6 7.7 40 43-83 27-66 (171)
206 PF14147 Spore_YhaL: Sporulati 34.8 40 0.00088 20.3 2.2 18 107-124 3-20 (52)
207 PRK08307 stage III sporulation 34.6 1.3E+02 0.0027 22.1 5.3 62 52-122 108-170 (171)
208 PF06916 DUF1279: Protein of u 34.2 36 0.00079 22.3 2.1 33 92-124 1-33 (91)
209 PF04740 LXG: LXG domain of WX 33.5 1.9E+02 0.0041 21.1 6.9 64 35-98 98-165 (204)
210 PF12718 Tropomyosin_1: Tropom 33.0 1.8E+02 0.0039 20.7 8.3 55 44-98 15-69 (143)
211 PRK04325 hypothetical protein; 33.0 1.3E+02 0.0028 19.1 5.6 37 61-97 13-49 (74)
212 PF04420 CHD5: CHD5-like prote 32.9 52 0.0011 23.9 3.0 31 70-100 72-102 (161)
213 PF11027 DUF2615: Protein of u 32.7 1.3E+02 0.0029 20.6 4.7 12 89-100 16-27 (103)
214 PF08113 CoxIIa: Cytochrome c 32.5 37 0.0008 18.7 1.6 16 106-121 8-23 (34)
215 PRK04098 sec-independent trans 32.4 2.1E+02 0.0045 21.2 7.1 53 43-96 27-79 (158)
216 PRK02119 hypothetical protein; 32.1 1.4E+02 0.0029 19.0 5.6 37 61-97 13-49 (73)
217 PRK10715 flk flagella biosynth 32.0 42 0.00092 27.6 2.5 32 53-84 228-261 (335)
218 PRK00846 hypothetical protein; 31.9 1.5E+02 0.0032 19.3 5.6 39 61-99 17-55 (77)
219 PRK14750 kdpF potassium-transp 31.8 76 0.0017 16.8 2.6 7 116-122 13-19 (29)
220 PF06363 Picorna_P3A: Picornav 31.6 1.4E+02 0.003 20.3 4.5 42 82-125 49-93 (100)
221 PF06682 DUF1183: Protein of u 31.6 31 0.00068 28.2 1.7 19 107-125 156-174 (318)
222 PF10854 DUF2649: Protein of u 31.4 62 0.0013 20.3 2.6 16 108-123 40-55 (67)
223 PRK13729 conjugal transfer pil 31.3 2.1E+02 0.0044 24.9 6.6 49 39-87 72-120 (475)
224 COG4068 Uncharacterized protei 31.3 41 0.00088 21.0 1.8 9 110-118 46-54 (64)
225 PF04102 SlyX: SlyX; InterPro 31.1 1.3E+02 0.0029 18.6 5.6 39 62-100 9-47 (69)
226 PRK15396 murein lipoprotein; P 30.7 1.5E+02 0.0034 19.2 5.9 48 44-98 26-73 (78)
227 PHA02657 hypothetical protein; 30.6 52 0.0011 22.1 2.3 6 116-121 41-46 (95)
228 PF14712 Snapin_Pallidin: Snap 30.5 1.5E+02 0.0032 18.9 7.9 29 69-97 62-90 (92)
229 PF08114 PMP1_2: ATPase proteo 30.5 62 0.0013 18.7 2.3 17 108-124 14-30 (43)
230 PF03356 Pox_LP_H2: Viral late 30.1 69 0.0015 24.2 3.2 36 87-122 13-48 (189)
231 PF04111 APG6: Autophagy prote 30.1 3E+02 0.0064 22.2 7.9 57 45-101 80-136 (314)
232 smart00283 MA Methyl-accepting 29.6 2.3E+02 0.0049 20.7 8.4 55 43-97 32-86 (262)
233 PF08651 DASH_Duo1: DASH compl 29.4 1.6E+02 0.0035 19.0 4.6 28 72-99 9-36 (78)
234 PF10504 DUF2452: Protein of u 29.2 2.4E+02 0.0052 20.9 6.7 33 38-70 47-79 (159)
235 PF13967 RSN1_TM: Late exocyto 29.0 44 0.00095 23.8 2.0 23 103-125 134-156 (157)
236 TIGR00782 ccoP cytochrome c ox 29.0 43 0.00093 26.4 2.1 20 105-124 28-47 (285)
237 PF05957 DUF883: Bacterial pro 29.0 1.7E+02 0.0036 19.0 9.7 20 72-91 32-51 (94)
238 PF06215 ISAV_HA: Infectious s 28.9 23 0.0005 28.9 0.6 38 52-89 306-343 (391)
239 PF11189 DUF2973: Protein of u 28.8 56 0.0012 20.4 2.2 19 106-124 4-22 (65)
240 COG2900 SlyX Uncharacterized p 28.7 1.7E+02 0.0036 18.9 5.6 37 63-99 14-50 (72)
241 PF06661 VirE3: VirE3; InterP 28.5 60 0.0013 26.3 2.8 46 55-100 220-265 (317)
242 PRK15048 methyl-accepting chem 28.5 3.7E+02 0.0079 22.8 9.1 53 45-97 272-324 (553)
243 PF15361 RIC3: Resistance to i 28.5 38 0.00083 24.6 1.6 11 115-125 93-103 (152)
244 PF04740 LXG: LXG domain of WX 28.4 2.4E+02 0.0051 20.6 6.9 53 44-99 99-159 (204)
245 cd06845 Bcl-2_like Apoptosis r 28.4 2.1E+02 0.0045 19.9 8.3 33 50-85 34-66 (144)
246 PF11239 DUF3040: Protein of u 28.3 1.6E+02 0.0035 18.7 4.6 23 71-93 9-31 (82)
247 PF07225 NDUF_B4: NADH-ubiquin 28.3 46 0.001 23.6 1.9 20 106-125 83-102 (125)
248 PF11346 DUF3149: Protein of u 28.1 66 0.0014 18.5 2.2 9 116-124 27-35 (42)
249 COG1470 Predicted membrane pro 28.1 44 0.00095 29.0 2.1 20 106-125 489-508 (513)
250 TIGR02120 GspF general secreti 28.0 2.7E+02 0.0059 22.6 6.7 19 82-100 136-154 (399)
251 TIGR02120 GspF general secreti 28.0 1E+02 0.0022 25.2 4.2 17 76-92 141-157 (399)
252 PRK08032 fliD flagellar cappin 27.9 2.3E+02 0.005 24.0 6.4 46 55-100 404-449 (462)
253 PF14812 PBP1_TM: Transmembran 27.8 3.1 6.6E-05 27.5 -3.9 14 104-117 65-78 (81)
254 PRK13275 mtrF tetrahydromethan 27.7 1.5E+02 0.0032 18.8 4.0 12 113-124 55-66 (67)
255 PHA02855 anti-apoptotic membra 27.7 1.2E+02 0.0026 22.8 4.0 15 111-125 159-173 (180)
256 PF11031 Phage_holin_T: Bacter 27.6 72 0.0016 24.7 3.0 38 86-123 8-46 (216)
257 KOG0809 SNARE protein TLG2/Syn 27.5 2.2E+02 0.0048 23.2 5.9 85 39-123 207-296 (305)
258 KOG3156 Uncharacterized membra 27.3 2.6E+02 0.0056 21.8 6.0 20 35-54 93-112 (220)
259 PF10168 Nup88: Nuclear pore c 27.1 4.8E+02 0.01 23.7 9.1 61 39-99 554-621 (717)
260 PF14227 UBN2_2: gag-polypepti 27.0 86 0.0019 20.8 3.1 48 41-89 41-88 (119)
261 KOG3650 Predicted coiled-coil 27.0 2.1E+02 0.0045 19.8 4.8 40 59-99 59-101 (120)
262 PTZ00446 vacuolar sorting prot 26.7 1.5E+02 0.0034 22.4 4.7 20 43-62 108-127 (191)
263 COG1766 fliF Flagellar basal b 26.7 38 0.00082 29.7 1.5 20 106-125 444-463 (545)
264 PF11466 Doppel: Prion-like pr 26.5 51 0.0011 17.6 1.4 12 106-117 7-18 (30)
265 PF05366 Sarcolipin: Sarcolipi 26.4 1.1E+02 0.0024 16.2 2.7 7 118-124 20-26 (31)
266 KOG2861 Uncharacterized conser 26.2 1.6E+02 0.0034 25.0 5.0 21 35-55 259-279 (399)
267 PF01708 Gemini_mov: Geminivir 26.2 75 0.0016 21.4 2.5 15 109-123 43-57 (91)
268 PF08372 PRT_C: Plant phosphor 26.0 2.7E+02 0.0058 20.4 6.3 51 72-122 63-113 (156)
269 PRK09039 hypothetical protein; 26.0 3.6E+02 0.0079 22.0 8.6 57 37-93 131-187 (343)
270 PF14316 DUF4381: Domain of un 25.8 47 0.001 23.5 1.6 7 116-122 34-40 (146)
271 PF05377 FlaC_arch: Flagella a 25.5 1.7E+02 0.0036 17.8 6.7 24 44-67 8-31 (55)
272 TIGR02132 phaR_Bmeg polyhydrox 25.4 3.1E+02 0.0066 20.9 7.3 22 77-98 113-134 (189)
273 PF01213 CAP_N: Adenylate cycl 25.4 3E+02 0.0065 22.4 6.4 31 46-76 51-81 (312)
274 COG2857 CYT1 Cytochrome c1 [En 24.9 96 0.0021 24.2 3.4 11 58-68 175-185 (250)
275 PF00015 MCPsignal: Methyl-acc 24.7 2.6E+02 0.0057 19.9 9.2 56 42-97 134-189 (213)
276 PRK09731 putative general secr 24.7 70 0.0015 24.0 2.4 19 106-124 38-56 (178)
277 PF14018 DUF4234: Domain of un 24.7 1E+02 0.0022 19.0 2.9 10 91-100 26-35 (75)
278 PF00509 Hemagglutinin: Haemag 24.6 4.3E+02 0.0092 23.4 7.4 43 59-101 413-457 (550)
279 PF05781 MRVI1: MRVI1 protein; 24.6 1.1E+02 0.0025 26.8 4.0 10 90-99 465-474 (538)
280 PRK10404 hypothetical protein; 24.5 2.3E+02 0.005 19.1 10.2 49 41-89 7-56 (101)
281 PF05266 DUF724: Protein of un 24.3 3.1E+02 0.0067 20.6 8.4 58 40-97 128-185 (190)
282 PF05335 DUF745: Protein of un 24.0 3.2E+02 0.0069 20.6 8.0 55 43-97 116-170 (188)
283 KOG1853 LIS1-interacting prote 24.0 2.1E+02 0.0045 23.2 5.0 34 37-71 152-185 (333)
284 cd01324 cbb3_Oxidase_CcoQ Cyto 23.9 78 0.0017 18.5 2.1 13 111-123 19-31 (48)
285 PF10805 DUF2730: Protein of u 23.8 2.4E+02 0.0051 19.0 7.9 55 39-100 45-101 (106)
286 PF03408 Foamy_virus_ENV: Foam 23.7 2.8E+02 0.0062 26.0 6.4 17 85-101 920-936 (981)
287 COG1422 Predicted membrane pro 23.7 3.4E+02 0.0074 20.8 7.1 22 103-124 122-143 (201)
288 PRK10299 PhoPQ regulatory prot 23.5 1.2E+02 0.0025 18.0 2.7 14 109-123 9-22 (47)
289 PTZ00464 SNF-7-like protein; P 23.4 2.2E+02 0.0048 21.8 5.0 19 44-62 103-121 (211)
290 PRK00708 sec-independent trans 23.4 3.5E+02 0.0076 20.8 8.1 41 42-82 26-68 (209)
291 PF13106 DUF3961: Domain of un 23.2 1.1E+02 0.0025 17.4 2.5 24 101-124 13-37 (40)
292 PF11315 Med30: Mediator compl 23.0 3.1E+02 0.0067 20.0 6.4 39 35-73 107-145 (150)
293 PRK01371 sec-independent trans 23.0 3E+02 0.0064 19.8 5.3 27 43-69 27-53 (137)
294 PRK11901 hypothetical protein; 22.8 80 0.0017 26.0 2.6 16 105-120 37-52 (327)
295 PF06103 DUF948: Bacterial pro 22.8 2.2E+02 0.0047 18.2 8.1 40 45-84 28-71 (90)
296 PRK10573 type IV pilin biogene 22.7 1.4E+02 0.003 24.4 4.0 13 85-97 137-149 (399)
297 COG5509 Uncharacterized small 22.6 1.6E+02 0.0035 18.4 3.3 44 13-56 2-45 (65)
298 PF05565 Sipho_Gp157: Siphovir 22.5 3E+02 0.0066 19.8 7.6 58 37-94 34-91 (162)
299 PF07432 Hc1: Histone H1-like 22.4 2.9E+02 0.0063 19.5 5.5 44 49-99 3-46 (123)
300 PRK00965 tetrahydromethanopter 22.3 39 0.00084 23.0 0.6 29 62-90 36-64 (96)
301 COG3190 FliO Flagellar biogene 22.2 76 0.0016 22.9 2.1 15 109-123 31-45 (137)
302 PHA00646 hypothetical protein 22.1 1.1E+02 0.0024 19.1 2.6 14 109-122 39-52 (65)
303 PF08181 DegQ: DegQ (SacQ) fam 22.0 1.7E+02 0.0038 16.8 4.2 33 65-97 5-37 (46)
304 PF12755 Vac14_Fab1_bd: Vacuol 22.0 2.5E+02 0.0054 18.6 5.8 50 50-99 46-96 (97)
305 PF06072 Herpes_US9: Alphaherp 21.9 1E+02 0.0022 19.2 2.3 13 105-117 30-42 (60)
306 PF03408 Foamy_virus_ENV: Foam 21.9 91 0.002 29.0 3.0 24 93-116 46-72 (981)
307 KOG4603 TBP-1 interacting prot 21.8 3.6E+02 0.0079 20.5 8.0 59 39-97 82-142 (201)
308 COG1963 Uncharacterized protei 21.8 1.5E+02 0.0032 21.8 3.5 37 61-99 91-127 (153)
309 COG3898 Uncharacterized membra 21.7 70 0.0015 27.6 2.1 17 109-125 47-63 (531)
310 PHA03231 glycoprotein BALF4; P 21.6 3E+02 0.0066 25.6 6.2 15 28-42 626-640 (829)
311 PF05609 LAP1C: Lamina-associa 21.6 73 0.0016 27.5 2.2 17 106-122 220-236 (465)
312 PRK15041 methyl-accepting chem 21.6 5.2E+02 0.011 22.1 8.9 49 41-89 438-486 (554)
313 PF05434 Tmemb_9: TMEM9; Inte 21.5 49 0.0011 24.2 1.0 10 114-123 64-73 (149)
314 PF10168 Nup88: Nuclear pore c 21.5 6.2E+02 0.013 23.0 9.1 46 55-100 563-608 (717)
315 PRK04406 hypothetical protein; 21.4 2.3E+02 0.005 18.0 7.1 39 60-98 14-52 (75)
316 TIGR01410 tatB twin arginine-t 21.3 2.4E+02 0.0052 18.1 5.6 39 43-82 26-64 (80)
317 TIGR02492 flgK_ends flagellar 21.3 4.3E+02 0.0093 21.1 6.7 55 35-89 130-184 (322)
318 smart00283 MA Methyl-accepting 21.0 3.4E+02 0.0073 19.8 8.9 15 47-61 43-57 (262)
319 PF09527 ATPase_gene1: Putativ 21.0 1.1E+02 0.0023 17.9 2.3 21 104-124 31-51 (55)
320 PF04995 CcmD: Heme exporter p 20.9 78 0.0017 18.1 1.6 16 107-122 10-25 (46)
321 PF06837 Fijivirus_P9-2: Fijiv 20.8 3E+02 0.0065 21.1 5.1 17 74-90 49-65 (214)
322 PF06936 Selenoprotein_S: Sele 20.6 33 0.00072 26.0 0.0 8 107-114 38-45 (190)
323 PHA00547 hypothetical protein 20.5 82 0.0018 25.7 2.2 19 106-124 38-56 (337)
324 PF05055 DUF677: Protein of un 20.2 3.8E+02 0.0082 22.0 6.1 19 69-87 155-173 (336)
325 PF02167 Cytochrom_C1: Cytochr 20.2 76 0.0016 24.5 1.9 17 107-123 195-211 (219)
No 1
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.6e-30 Score=180.07 Aligned_cols=117 Identities=35% Similarity=0.553 Sum_probs=110.6
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhh
Q 039203 9 ASKGALFDEYDGLEEGGLKASSSYSSGIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMS 88 (125)
Q Consensus 9 ~~r~~l~~~~~~~~~~~~~~~~~~~~~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~ 88 (125)
.+|..+|++.+|..++.|+|+|++.-+.+|.|||+.++.|.++|.+||.++.+|++||+.||++||.|+++||+|...|.
T Consensus 2 ~~R~g~~dg~~~l~~~~~~a~ss~~~~~le~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~ 81 (118)
T KOG3385|consen 2 GSRFGLFDGSNGLEDGVSRASSSSHLASLERENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLS 81 (118)
T ss_pred CcccCcccCCCcccccccccCchhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHH
Confidence 57889999989999999999998888999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCcceehHHHHHHHHHHHHHHHhC
Q 039203 89 GTMDRFKMVFEKKSNRRICTLVGSFVVSFFVLYYLIR 125 (125)
Q Consensus 89 ~t~~rl~~v~~~~~~~~~~~lI~~lvviflvly~l~k 125 (125)
+|+.|++.+.++++.+.+||+++|++|+||++||+++
T Consensus 82 gtm~r~~~~ar~sg~~l~~~m~~f~lV~~fi~~~~lt 118 (118)
T KOG3385|consen 82 GTMGRLKTMARRSGISLLCWMAVFSLVAFFILWVWLT 118 (118)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhheeeC
Confidence 9999999999997778899999999999999998875
No 2
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.6e-19 Score=139.60 Aligned_cols=114 Identities=21% Similarity=0.250 Sum_probs=87.5
Q ss_pred cccccCCCCCCCC-CCC-CCCCCCCC-c------chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 039203 10 SKGALFDEYDGLE-EGG-LKASSSYS-S------GIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSM 80 (125)
Q Consensus 10 ~r~~l~~~~~~~~-~~~-~~~~~~~~-~------~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~ 80 (125)
.|..+.+++.+-- ++. +++++..+ . +++.+|||+.||.|+++|+++|++|..||+|+++|+.+||++++.|
T Consensus 110 ~r~~l~~~~~~~~~~~~~~~~~~~D~v~~~~~~qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~ 189 (235)
T KOG3202|consen 110 IRDILLGPEKSPNLDEAMSRASGLDNVQEIVQLQQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEM 189 (235)
T ss_pred chhhhcCCCCCCchhhhHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3666776554421 222 24444332 2 7888999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhHHHHHHHHHHhcCCcceehHH-HHHHHHHHHHHHH
Q 039203 81 DASRGIMSGTMDRFKMVFEKKSNRRICTLV-GSFVVSFFVLYYL 123 (125)
Q Consensus 81 d~t~~~L~~t~~rl~~v~~~~~~~~~~~lI-~~lvviflvly~l 123 (125)
|.|..+|.++++++.+|.+.++.|..||+| ++++++++++.++
T Consensus 190 d~t~srl~~~~~~l~~v~~~~s~~~~~~~il~l~~~~~lvv~i~ 233 (235)
T KOG3202|consen 190 DRTESRLDRVMKRLAKVNRMASQCSQWCAILLLVGLLLLVVIIF 233 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHh
Confidence 999999999999999999877777655544 4444444444444
No 3
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=99.46 E-value=6.5e-13 Score=82.69 Aligned_cols=61 Identities=28% Similarity=0.453 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh
Q 039203 40 DNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK 100 (125)
Q Consensus 40 eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~ 100 (125)
|+|+.|+.|+++|..||+++.+|+.||++|+.+||++++.|+.+...|+++++++.++.+.
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~ 61 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKY 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999999999999999999999999999999875
No 4
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=99.20 E-value=9.1e-11 Score=71.40 Aligned_cols=59 Identities=27% Similarity=0.396 Sum_probs=56.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHH
Q 039203 38 EHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKM 96 (125)
Q Consensus 38 e~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~ 96 (125)
++++|+.++.|+.+|..|++++.+|+.||..|+++||.+++.++++...++.+.+++.+
T Consensus 1 ~~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~k 59 (60)
T cd00193 1 EQERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKK 59 (60)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36889999999999999999999999999999999999999999999999999999876
No 5
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=99.14 E-value=7.2e-10 Score=86.31 Aligned_cols=90 Identities=16% Similarity=0.194 Sum_probs=79.4
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHhcCCcceehHHHHHHH
Q 039203 36 IDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLVGSFVV 115 (125)
Q Consensus 36 ~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~~~~~~~~~lI~~lvv 115 (125)
.-+..||+..++|.+=++.||+-+..+++-|++.+..|+.....+|+....|+.+.+|++...+++.+|+.|.+|+++++
T Consensus 160 ~~~~~QE~L~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~~~~~~~i~~v~~ 239 (251)
T PF09753_consen 160 HHRNLQEDLTEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWGCWTWLMIFVVII 239 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999877655545556666677
Q ss_pred HHHHHHHHhC
Q 039203 116 SFFVLYYLIR 125 (125)
Q Consensus 116 iflvly~l~k 125 (125)
+|+++|+++|
T Consensus 240 ~Fi~mvl~ir 249 (251)
T PF09753_consen 240 VFIMMVLFIR 249 (251)
T ss_pred HHHHHHHHhe
Confidence 8888888876
No 6
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=99.10 E-value=6e-10 Score=68.77 Aligned_cols=62 Identities=23% Similarity=0.319 Sum_probs=59.1
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHH
Q 039203 35 GIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKM 96 (125)
Q Consensus 35 ~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~ 96 (125)
...++++|+.++.|+..+..+++++.+|+.||..|+++||.+++.++++...++.+.+++.+
T Consensus 4 ~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~ 65 (66)
T smart00397 4 DQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKK 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 45789999999999999999999999999999999999999999999999999999999875
No 7
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=1.1e-09 Score=86.74 Aligned_cols=64 Identities=27% Similarity=0.300 Sum_probs=61.4
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHH
Q 039203 35 GIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVF 98 (125)
Q Consensus 35 ~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~ 98 (125)
+..+.|.|+.|++|++.+.+||++|.++|.||+.||+.||.|++.+|+...++..+++|+++++
T Consensus 210 ~~~edeiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~kLl 273 (273)
T KOG3065|consen 210 PAAEDEIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKKLL 273 (273)
T ss_pred ChhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHhcC
Confidence 6778899999999999999999999999999999999999999999999999999999999873
No 8
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=1.2e-06 Score=70.20 Aligned_cols=56 Identities=23% Similarity=0.323 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHH
Q 039203 44 AIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFE 99 (125)
Q Consensus 44 ~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~ 99 (125)
.+-.|..++.-|+++..+|.-.|+.|.+++|.++..+.++..-+..+...+++..+
T Consensus 207 ~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~ 262 (297)
T KOG0810|consen 207 EIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVK 262 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999997754
No 9
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=98.40 E-value=3.7e-06 Score=66.54 Aligned_cols=88 Identities=18% Similarity=0.224 Sum_probs=74.4
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh---cCCcceehHHH
Q 039203 35 GIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK---KSNRRICTLVG 111 (125)
Q Consensus 35 ~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~---~~~~~~~~lI~ 111 (125)
+.+..|-|+.+..|+.+|.-|..+-.+++.=|.+|..+.|.++..+++|...++++.+.+.+...- .+.|+.|++++
T Consensus 187 q~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~~Lli 266 (283)
T COG5325 187 QILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFYLLLI 266 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhhHHHH
Confidence 445567799999999999999999999999999999999999999999999999999999999653 44556777777
Q ss_pred HHHHHHHHHHH
Q 039203 112 SFVVSFFVLYY 122 (125)
Q Consensus 112 ~lvviflvly~ 122 (125)
++||++|++..
T Consensus 267 l~vv~lfv~l~ 277 (283)
T COG5325 267 LLVVLLFVSLI 277 (283)
T ss_pred HHHHHHHHHHH
Confidence 77766555543
No 10
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=7e-06 Score=65.36 Aligned_cols=80 Identities=18% Similarity=0.349 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh-cCCcceehHHHHHHHHHHHHHHH
Q 039203 45 IDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK-KSNRRICTLVGSFVVSFFVLYYL 123 (125)
Q Consensus 45 Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~-~~~~~~~~lI~~lvviflvly~l 123 (125)
+..+++++.-|-++-.++-.-|.+|.+++-.+|+.|+.+...+..+..-|-+.+.. +++++++.=|++++++||++||+
T Consensus 229 ~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwLmvkiF~i~ivFflvfvl 308 (311)
T KOG0812|consen 229 MQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWLMVKIFGILIVFFLVFVL 308 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 44567777788899999999999999999999999999999999999999999988 44555555577777788888887
Q ss_pred h
Q 039203 124 I 124 (125)
Q Consensus 124 ~ 124 (125)
+
T Consensus 309 f 309 (311)
T KOG0812|consen 309 F 309 (311)
T ss_pred h
Confidence 6
No 11
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=1.4e-05 Score=63.43 Aligned_cols=77 Identities=13% Similarity=0.231 Sum_probs=65.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh--cCCcceehHHHHHHH
Q 039203 39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK--KSNRRICTLVGSFVV 115 (125)
Q Consensus 39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~--~~~~~~~~lI~~lvv 115 (125)
++-++.+..|+..+.-+..|-.+++.=|.+|..++|.++..++++...+..+++.+.+..+. +..++.|++++|+++
T Consensus 176 eeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~~~ll~v~~~ 254 (269)
T KOG0811|consen 176 EEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKKCILLLVGGP 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHH
Confidence 55666788888999999999999999999999999999999999999999999999999773 344555665555544
No 12
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=1.2e-05 Score=64.26 Aligned_cols=85 Identities=14% Similarity=0.241 Sum_probs=65.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh-cCCcceehHHHHHHHHH
Q 039203 39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK-KSNRRICTLVGSFVVSF 117 (125)
Q Consensus 39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~-~~~~~~~~lI~~lvvif 117 (125)
.|-|+.+-.+..+|.-|.++-.+++.=|-+|...+|.++-.+++|...++.+.+.+.|.-.. ..++.+|++.+++++||
T Consensus 214 ~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~~~i~~L~l~ii 293 (305)
T KOG0809|consen 214 REREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKMKVILMLTLLII 293 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCceEehHHHHHHHH
Confidence 34456688899999999999999999999999999999999999999999999999999653 34444444333333333
Q ss_pred HHHHHH
Q 039203 118 FVLYYL 123 (125)
Q Consensus 118 lvly~l 123 (125)
++|.++
T Consensus 294 ~llvll 299 (305)
T KOG0809|consen 294 ALLVLL 299 (305)
T ss_pred HHHHHH
Confidence 333333
No 13
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=98.09 E-value=3.2e-05 Score=60.30 Aligned_cols=78 Identities=12% Similarity=0.207 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh----cCCcceehHHHHHHHHHHH
Q 039203 44 AIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK----KSNRRICTLVGSFVVSFFV 119 (125)
Q Consensus 44 ~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~----~~~~~~~~lI~~lvviflv 119 (125)
.+-.|..++.-|-++-.+|..+|.+|.++.|-++.++..+...+...+..+.+.++. ...++.||.|||++++|++
T Consensus 186 ~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~c~gI~~iii~viv 265 (280)
T COG5074 186 EIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKKKIRCYGICFIIIIVIV 265 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhcceehhhhHHHHHHHHH
Confidence 377899999999999999999999999999999999998888888777777777654 2355688888888777554
Q ss_pred HH
Q 039203 120 LY 121 (125)
Q Consensus 120 ly 121 (125)
.+
T Consensus 266 ~v 267 (280)
T COG5074 266 VV 267 (280)
T ss_pred HH
Confidence 33
No 14
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=98.05 E-value=0.00012 Score=49.01 Aligned_cols=82 Identities=13% Similarity=0.181 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHhcCCcceehHHHHHHHHHHHHHHH
Q 039203 44 AIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLVGSFVVSFFVLYYL 123 (125)
Q Consensus 44 ~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~~~~~~~~~lI~~lvviflvly~l 123 (125)
.|......++.--..+..--+++.+|+.-|..+++.++.....|+.+.+-++++-++...-.+++...|+++++.|+|++
T Consensus 9 ~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~v~yI~ 88 (92)
T PF03908_consen 9 SLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLVVLYIL 88 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 33444444444445566667889999999999999999999999999999999987654334444566777777888887
Q ss_pred hC
Q 039203 124 IR 125 (125)
Q Consensus 124 ~k 125 (125)
+|
T Consensus 89 ~r 90 (92)
T PF03908_consen 89 WR 90 (92)
T ss_pred hh
Confidence 65
No 15
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=97.93 E-value=8.3e-05 Score=57.47 Aligned_cols=85 Identities=15% Similarity=0.183 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHhcCC-cceehHHHHHHHHHHH
Q 039203 41 NDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSN-RRICTLVGSFVVSFFV 119 (125)
Q Consensus 41 qD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~~~~-~~~~~lI~~lvviflv 119 (125)
|++..+.|..=+..||..+..-++-+++.|..+......+|.....|..+..|+.+-.++... |-.|.+|+|+++.|+.
T Consensus 153 QeeLaesll~LArslKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s~wf~~~miI~v~~sFVs 232 (244)
T KOG2678|consen 153 QEELAESLLKLARSLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLSYWFYITMIIFVILSFVS 232 (244)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 345566777778889999999999999999999999999999999999999999999887643 3344466677777777
Q ss_pred HHHHhC
Q 039203 120 LYYLIR 125 (125)
Q Consensus 120 ly~l~k 125 (125)
++++++
T Consensus 233 Miliiq 238 (244)
T KOG2678|consen 233 MILIIQ 238 (244)
T ss_pred HHHHHH
Confidence 777653
No 16
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.0021 Score=49.64 Aligned_cols=87 Identities=15% Similarity=0.171 Sum_probs=67.1
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHhcCCcceeh--HHHH
Q 039203 35 GIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICT--LVGS 112 (125)
Q Consensus 35 ~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~~~~~~~~~--lI~~ 112 (125)
+++..|.+ .++.=..-|..+-.+|.+-.+.+..|..+|..++..+..+..++=....-+.++-.++ .+-.++ .|..
T Consensus 142 e~~lkE~~-~in~s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~kk-rrdslILa~Vis 219 (231)
T KOG3208|consen 142 EMYLKEHD-HINNSIRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIKK-RRDSLILAAVIS 219 (231)
T ss_pred HHHHHHhc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHh-hhhhHHHHHHHH
Confidence 56666776 7777777888888999999999999999999999999999999999888888884433 233333 3444
Q ss_pred HHHHHHHHHHH
Q 039203 113 FVVSFFVLYYL 123 (125)
Q Consensus 113 lvviflvly~l 123 (125)
++++|+++||+
T Consensus 220 ~C~llllfy~~ 230 (231)
T KOG3208|consen 220 VCTLLLLFYWI 230 (231)
T ss_pred HHHHHHHHHHh
Confidence 45566667765
No 17
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=97.08 E-value=0.0083 Score=39.44 Aligned_cols=58 Identities=7% Similarity=0.176 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHhhhhhhhhHHHHHHHHHH
Q 039203 42 DKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMG---NSMDASRGIMSGTMDRFKMVFE 99 (125)
Q Consensus 42 D~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~---~~~d~t~~~L~~t~~rl~~v~~ 99 (125)
++.+..+.+.|...+++-.+=-+.+-+-.+-|++|. +.+........+..+++++-.-
T Consensus 2 ~dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~ 62 (89)
T PF00957_consen 2 NDKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMW 62 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 346777777777776544333333434444455554 4455555666666666666653
No 18
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.0039 Score=47.91 Aligned_cols=65 Identities=9% Similarity=0.056 Sum_probs=52.0
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh
Q 039203 35 GIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK 100 (125)
Q Consensus 35 ~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~ 100 (125)
+..-++|| .+..=+..+.-+=..|.+|=+-+.+|+..|......|-...+.|.=+..=|.-+-+.
T Consensus 122 D~el~~~d-~l~~s~~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR 186 (213)
T KOG3251|consen 122 DEELQEND-SLKRSHNMLDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERR 186 (213)
T ss_pred hHHHHhhh-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 44445555 666677777777888999999999999999999999999999888777777666554
No 19
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=96.67 E-value=0.035 Score=34.41 Aligned_cols=64 Identities=13% Similarity=0.150 Sum_probs=55.5
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh
Q 039203 36 IDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK 100 (125)
Q Consensus 36 ~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~ 100 (125)
.+.++++ .|+.=...+...-.+|.++..++..|.+.|......++.+...+..+.+-|+.+.++
T Consensus 2 ~l~~e~~-~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR 65 (66)
T PF12352_consen 2 RLLRESD-SLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRR 65 (66)
T ss_dssp HHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcc
Confidence 3556666 777777888888999999999999999999999999999999999999888887543
No 20
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=0.016 Score=44.71 Aligned_cols=68 Identities=12% Similarity=0.253 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHhc-CCcceehHHHHH--HHHHHHHHHHh
Q 039203 57 RLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKK-SNRRICTLVGSF--VVSFFVLYYLI 124 (125)
Q Consensus 57 ~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~~-~~~~~~~lI~~l--vviflvly~l~ 124 (125)
++|..|-.++-.|-+-|..--...-.|++.|.++.+-+..+.++. .++.+|+.|+++ +++++++|+-+
T Consensus 149 qIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~~~il~ilY~kf 219 (220)
T KOG1666|consen 149 QIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALLVLAILLILYSKF 219 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 788888899999999898888888999999999999999888763 455566644333 33555555433
No 21
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=96.49 E-value=0.037 Score=36.33 Aligned_cols=55 Identities=11% Similarity=0.098 Sum_probs=37.1
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHH
Q 039203 36 IDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTM 91 (125)
Q Consensus 36 ~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~ 91 (125)
.++++-|+--+.+.+.+..+-+-+..+. ++++..+-|.+-...|.+...++++.+
T Consensus 7 ~i~~~v~~v~~im~~Ni~~ll~Rge~L~-~L~~kt~~L~~~a~~F~k~a~~l~r~~ 61 (89)
T PF00957_consen 7 QIQEQVEEVKNIMRENIDKLLERGEKLE-ELEDKTEELSDNAKQFKKNAKKLKRKM 61 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCchHH-HHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4456666666666666666666666653 455666667777778888877777766
No 22
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.14 E-value=0.14 Score=35.88 Aligned_cols=52 Identities=17% Similarity=0.260 Sum_probs=26.3
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhh---hhhhhhHHHHHHHH
Q 039203 35 GIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDAS---RGIMSGTMDRFKMV 97 (125)
Q Consensus 35 ~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t---~~~L~~t~~rl~~v 97 (125)
+..++|-|+-.+.+...| ..=++.+.+ ||+|++..|.. ...-+++..++++-
T Consensus 32 ~~tq~QvdeVv~IMr~NV----------~KVlER~ek-L~~L~drad~L~~~as~F~~~A~klkrk 86 (116)
T KOG0860|consen 32 QQTQAQVDEVVDIMRENV----------EKVLERGEK-LDELDDRADQLQAGASQFEKTAVKLKRK 86 (116)
T ss_pred HHHHHHHHHHHHHHHHhH----------HHHHHhcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555554444 444455544 56665555443 34455555555554
No 23
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.07 E-value=0.1 Score=42.33 Aligned_cols=111 Identities=17% Similarity=0.202 Sum_probs=72.3
Q ss_pred cccCCCCCCCCCC-CCCCCCCC-CcchhHHhHHHHHHHHHHH---HHH-------HHHHHHHHHHHHHHHHHHHHHhhhH
Q 039203 12 GALFDEYDGLEEG-GLKASSSY-SSGIDEHDNDKAIDGLKER---AVF-------LKRLTGDIHEEVESHNRLLDRMGNS 79 (125)
Q Consensus 12 ~~l~~~~~~~~~~-~~~~~~~~-~~~~le~eqD~~Ld~L~~~---V~~-------LK~ia~~I~~El~~Qn~lLD~l~~~ 79 (125)
..+.+++.+.|+. .+.++-+. ..+++|+||-+.+..+.+- |.. .-.+-..+-+-|-.|..-+|-+-+.
T Consensus 189 ~s~~~~e~~~~~~~~~e~~~s~e~~Q~~E~En~~l~~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~ 268 (316)
T KOG3894|consen 189 RSLADSELGQDEEKHYEDPLSKEQVQLLETENQRLLNELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDL 268 (316)
T ss_pred hcccchhhcCcccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444666776643 23332223 2266777766655555422 222 2233445667778888889999999
Q ss_pred HHhhhhhhhhHHHHHHHHHHhcCCcceehHHHHHHHHHHHHHH
Q 039203 80 MDASRGIMSGTMDRFKMVFEKKSNRRICTLVGSFVVSFFVLYY 122 (125)
Q Consensus 80 ~d~t~~~L~~t~~rl~~v~~~~~~~~~~~lI~~lvviflvly~ 122 (125)
...++..++..+.-|.+....++..+-|++++++|..|+++++
T Consensus 269 ~~~~teNIk~gNe~irka~~~~~~~r~~~lf~llvlsf~lLFl 311 (316)
T KOG3894|consen 269 QSGATENIKDGNEEIRKAKRNNGGLRVFLLFFLLVLSFSLLFL 311 (316)
T ss_pred cccchhhhhhhHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999998877666666666666665555543
No 24
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=95.83 E-value=0.11 Score=33.06 Aligned_cols=61 Identities=11% Similarity=0.278 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHhcCCcceehHHHHHHHHHHHHHHHhC
Q 039203 62 IHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLVGSFVVSFFVLYYLIR 125 (125)
Q Consensus 62 I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~~~~~~~~~lI~~lvviflvly~l~k 125 (125)
+...++.+.+-++.++..-+.....+.+..++++++-.. .++.+.+++. .++.+++|+++|
T Consensus 11 ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n--~kW~~r~iiG-aiI~~i~~~i~K 71 (71)
T PF10779_consen 11 IETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSN--TKWIWRTIIG-AIITAIIYLIIK 71 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-HHHHHHHHHHhC
Confidence 444555566667777777777777788888888888432 3444444444 444455677765
No 25
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=95.77 E-value=0.44 Score=37.04 Aligned_cols=83 Identities=13% Similarity=0.209 Sum_probs=60.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh----cCCcceehHHHHHH
Q 039203 39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK----KSNRRICTLVGSFV 114 (125)
Q Consensus 39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~----~~~~~~~~lI~~lv 114 (125)
+.+...-+.|.+. +=.+|..+.+-...=+..|.+=...++++...+......++..-++ .+.++.||+.++++
T Consensus 159 ~~~~~~QE~L~~e---m~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~~~~~~~i~ 235 (251)
T PF09753_consen 159 QHHRNLQEDLTEE---MLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWGCWTWLMIF 235 (251)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 3444455555544 4566888888887778889999999999999999999999888553 34455677777777
Q ss_pred HHHHHHHHHh
Q 039203 115 VSFFVLYYLI 124 (125)
Q Consensus 115 viflvly~l~ 124 (125)
+++++|++++
T Consensus 236 ~v~~~Fi~mv 245 (251)
T PF09753_consen 236 VVIIVFIMMV 245 (251)
T ss_pred HHHHHHHHHH
Confidence 7777666554
No 26
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.43 E-value=0.23 Score=34.88 Aligned_cols=21 Identities=10% Similarity=0.196 Sum_probs=8.4
Q ss_pred hhhHHHhhhhhhhhHHHHHHHH
Q 039203 76 MGNSMDASRGIMSGTMDRFKMV 97 (125)
Q Consensus 76 l~~~~d~t~~~L~~t~~rl~~v 97 (125)
|++--|+++ .|..+...+++-
T Consensus 59 L~~L~drad-~L~~~as~F~~~ 79 (116)
T KOG0860|consen 59 LDELDDRAD-QLQAGASQFEKT 79 (116)
T ss_pred HHHHHHHHH-HHHHHHHHHHHH
Confidence 333333333 344444444443
No 27
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=93.78 E-value=1.3 Score=29.33 Aligned_cols=52 Identities=13% Similarity=0.140 Sum_probs=33.7
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHhhhhhh
Q 039203 36 IDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESH-NRLLDRMGNSMDASRGIM 87 (125)
Q Consensus 36 ~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Q-n~lLD~l~~~~d~t~~~L 87 (125)
.+.++-++..+.+..-+...+..+....+++.+. ...+++..+........+
T Consensus 2 ~l~~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~ 54 (94)
T PF05957_consen 2 DLKAELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQA 54 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777778888888877777777777777766 335555544444444333
No 28
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=92.09 E-value=1.2 Score=30.54 Aligned_cols=50 Identities=10% Similarity=0.153 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhh
Q 039203 40 DNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSG 89 (125)
Q Consensus 40 eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~ 89 (125)
.|.++++.|.+.|..+-..=.....|++.|.+.|+.+...+.+.+.||.+
T Consensus 50 ~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD~ 99 (102)
T PF01519_consen 50 AQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLDK 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55667777777777777766777777777777777777777766666553
No 29
>PRK00846 hypothetical protein; Provisional
Probab=91.27 E-value=2 Score=28.06 Aligned_cols=52 Identities=10% Similarity=0.065 Sum_probs=44.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhH
Q 039203 39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGT 90 (125)
Q Consensus 39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t 90 (125)
++-+++++.|..++..+-..-..+|+.|-.|...||.|...+.....+|+..
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566899999999999999999999999999999999988887777766654
No 30
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=91.23 E-value=2 Score=27.13 Aligned_cols=51 Identities=16% Similarity=0.287 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHH
Q 039203 41 NDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTM 91 (125)
Q Consensus 41 qD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~ 91 (125)
.++.++.|..++..+-..-..+++.|-.|.+.||.|...+.....+|+...
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 367899999999999999999999999999999999998888888777643
No 31
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=90.36 E-value=4.4 Score=29.87 Aligned_cols=33 Identities=15% Similarity=0.293 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHH
Q 039203 61 DIHEEVESHNRLLDRMGNSMDASRGIMSGTMDR 93 (125)
Q Consensus 61 ~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~r 93 (125)
.+.+|...++.-+.+++..++..-+.|+.....
T Consensus 117 ~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~ 149 (177)
T PF07798_consen 117 RIREEQAKQELKIQELNNKIDTEIANLRTEIES 149 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555444444443
No 32
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=90.06 E-value=3.3 Score=29.44 Aligned_cols=60 Identities=15% Similarity=0.299 Sum_probs=50.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHH
Q 039203 39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVF 98 (125)
Q Consensus 39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~ 98 (125)
.+.-++||.+..++...+.++..|.+|+.+=..-++.+..+++.....+..--.+|..+-
T Consensus 64 khLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 64 KHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555678888888888899999999999988888888888888888888887777777664
No 33
>PRK00736 hypothetical protein; Provisional
Probab=89.71 E-value=3 Score=26.37 Aligned_cols=48 Identities=10% Similarity=0.235 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhh
Q 039203 42 DKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSG 89 (125)
Q Consensus 42 D~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~ 89 (125)
++.++.|..++..+-..-..+|+.|-.|.+-||.|...+.....+++.
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357999999999999999999999999999998888777766666644
No 34
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.52 E-value=5.6 Score=31.73 Aligned_cols=85 Identities=11% Similarity=-0.032 Sum_probs=49.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHhcCCcceehHHHHHHHHH
Q 039203 38 EHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLVGSFVVSF 117 (125)
Q Consensus 38 e~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~~~~~~~~~lI~~lvvif 117 (125)
.++-+..+-++.+-..-|-.+-..=|+-|+.=..-++.....+......|.++.+-=.+..+.. ....|+.++++++++
T Consensus 182 I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~-~~ll~v~~~v~lii~ 260 (269)
T KOG0811|consen 182 IEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKK-CILLLVGGPVGLIIG 260 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-hhhhHHHHHHHHHHH
Confidence 3444445666666666666666666666666666667777777777777777666655554433 334455444445555
Q ss_pred HHHHHH
Q 039203 118 FVLYYL 123 (125)
Q Consensus 118 lvly~l 123 (125)
+++|..
T Consensus 261 l~i~~~ 266 (269)
T KOG0811|consen 261 LIIAGI 266 (269)
T ss_pred HHHHHh
Confidence 555544
No 35
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.07 E-value=6.4 Score=30.09 Aligned_cols=62 Identities=8% Similarity=0.111 Sum_probs=38.9
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHH
Q 039203 36 IDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMV 97 (125)
Q Consensus 36 ~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v 97 (125)
.+++|.++.=+.|.+.-+...+....+.++++..+..+.+|...-+.....+..+.+++..+
T Consensus 97 ~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l 158 (206)
T PRK10884 97 DLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAA 158 (206)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555666777777777777777777777777777777666666554
No 36
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=88.97 E-value=5 Score=26.66 Aligned_cols=76 Identities=16% Similarity=0.321 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhHHHhhhhhhhhHHHHHHHHHHhcCCcceehHHHHHHHHHHHH
Q 039203 44 AIDGLKERAVFLKRLTGDIHEEVESHN---RLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLVGSFVVSFFVL 120 (125)
Q Consensus 44 ~Ld~L~~~V~~LK~ia~~I~~El~~Qn---~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~~~~~~~~~lI~~lvviflvl 120 (125)
.+|.+.+++++.+.-=..|..-+.... +-=.+++..+......+.+--+.++.+-+. +++.+.+.+.++++++++
T Consensus 6 eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkE--NrK~~~ls~~l~~v~~Lv 83 (85)
T PF15188_consen 6 EIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKE--NRKSMLLSVALFFVCFLV 83 (85)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHh--hhhhHHHHHHHHHHHHHH
Confidence 456666666665544444443332211 111345577777888888888888888543 444444444444455555
Q ss_pred H
Q 039203 121 Y 121 (125)
Q Consensus 121 y 121 (125)
|
T Consensus 84 Y 84 (85)
T PF15188_consen 84 Y 84 (85)
T ss_pred c
Confidence 5
No 37
>PRK04325 hypothetical protein; Provisional
Probab=88.73 E-value=4.3 Score=26.04 Aligned_cols=49 Identities=16% Similarity=0.223 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhh
Q 039203 41 NDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSG 89 (125)
Q Consensus 41 qD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~ 89 (125)
-++.++.|..++..+-..-..+++.|-.|.+.|+.|...+.....+|+.
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457999999999999999999999999999998888776666555544
No 38
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.24 E-value=3.4 Score=31.99 Aligned_cols=64 Identities=13% Similarity=0.190 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHhcCCcceehHHHHHHHHHHHHHHH
Q 039203 59 TGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLVGSFVVSFFVLYYL 123 (125)
Q Consensus 59 a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~~~~~~~~~lI~~lvviflvly~l 123 (125)
+.+|++=+. -++.|+.++..-++....=+...+..+.+...+-...++-+++|.++++|+++++
T Consensus 151 ~~niedvl~-rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~~~aa~~~~~~~l~f~~~f~ 214 (216)
T KOG0862|consen 151 VENLEDVLQ-RGEVLNALSSMASELSSESRKYPKTAKGINRKSLIRKYAAYVVFFVLLLFYVRFI 214 (216)
T ss_pred HHhHHHHHh-hchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444333 3334555544444333322333333333333332333334566666665555554
No 39
>PRK00295 hypothetical protein; Provisional
Probab=88.21 E-value=4.4 Score=25.56 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhh
Q 039203 42 DKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSG 89 (125)
Q Consensus 42 D~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~ 89 (125)
++.++.|..++..+-..-..+|+.|-.|.+-||.|...+.....+++.
T Consensus 4 e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356999999999999999999999999999999888777777666654
No 40
>PRK02119 hypothetical protein; Provisional
Probab=87.65 E-value=5.5 Score=25.51 Aligned_cols=51 Identities=12% Similarity=0.260 Sum_probs=41.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhh
Q 039203 39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSG 89 (125)
Q Consensus 39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~ 89 (125)
..-+++++.|..++..+-..-..+|+.|-.|.+-||.|...+.....+|+.
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445678999999999999999999999999999998888777666555544
No 41
>PRK02793 phi X174 lysis protein; Provisional
Probab=87.26 E-value=5.7 Score=25.32 Aligned_cols=49 Identities=10% Similarity=0.212 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhh
Q 039203 41 NDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSG 89 (125)
Q Consensus 41 qD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~ 89 (125)
-+++++.|..++..+-..-..+++.|-.|.+-||.+...+.....+|+.
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999888888776666555544
No 42
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=86.96 E-value=8.3 Score=28.36 Aligned_cols=38 Identities=16% Similarity=0.348 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhh
Q 039203 43 KAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIM 87 (125)
Q Consensus 43 ~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L 87 (125)
+..+.+.....+|+.++..+.+ +|+++....++..+-+
T Consensus 52 ~~~~~lr~Rydrlr~va~rvQ~-------vlgd~At~gERl~all 89 (156)
T PF08372_consen 52 RPPDSLRMRYDRLRSVAGRVQN-------VLGDVATQGERLQALL 89 (156)
T ss_pred cccHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhh
Confidence 3566788888888888876643 4566655555444433
No 43
>PRK04406 hypothetical protein; Provisional
Probab=86.83 E-value=6.4 Score=25.39 Aligned_cols=50 Identities=14% Similarity=0.323 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhh
Q 039203 40 DNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSG 89 (125)
Q Consensus 40 eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~ 89 (125)
.-+++++.|..++..+-..-..+|+.|-.|.+-||.|...+.....+|+.
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678999999999999999999999999999998888777666555543
No 44
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.65 E-value=1.5 Score=34.31 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=27.4
Q ss_pred hHHHhhhhhhhhHHHHHHHHHHh----cCCcceehHHHHHHHHHHHHHHH
Q 039203 78 NSMDASRGIMSGTMDRFKMVFEK----KSNRRICTLVGSFVVSFFVLYYL 123 (125)
Q Consensus 78 ~~~d~t~~~L~~t~~rl~~v~~~----~~~~~~~~lI~~lvviflvly~l 123 (125)
.-.|...+.+.+|-.|+.+..++ +.....|-..|.++++|.++.++
T Consensus 180 ~llDdl~~e~d~t~srl~~~~~~l~~v~~~~s~~~~~~~il~l~~~~~lv 229 (235)
T KOG3202|consen 180 RLLDDLDNEMDRTESRLDRVMKRLAKVNRMASQCSQWCAILLLVGLLLLV 229 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHH
Confidence 33455566677777777777654 23334666667776666555443
No 45
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=86.39 E-value=5.3 Score=31.49 Aligned_cols=49 Identities=16% Similarity=0.225 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHH
Q 039203 43 KAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMV 97 (125)
Q Consensus 43 ~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v 97 (125)
..+.++...+.++.+.+..+.+.++. ++|. -....+.+++.+++.+.-+
T Consensus 216 ~~~~dv~~~~~~l~~~~~~~~e~l~~---l~d~---~~~~~s~~~N~~mk~LTvv 264 (318)
T TIGR00383 216 EYLRDIYDHILSLLEMIETYRELLSS---LMDL---YLSLVNNKMNEIMKILTVV 264 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH---HHHHHHHHHHHHHHHHHHH
Confidence 34555555555555554444444322 1111 1222345666666665543
No 46
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=86.13 E-value=2.9 Score=27.20 Aligned_cols=50 Identities=14% Similarity=0.304 Sum_probs=39.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHhhhhhhh
Q 039203 39 HDNDKAIDGLKERAVFLKRLTGD---IHEEVESHNRLLDRMGNSMDASRGIMS 88 (125)
Q Consensus 39 ~eqD~~Ld~L~~~V~~LK~ia~~---I~~El~~Qn~lLD~l~~~~d~t~~~L~ 88 (125)
..-|+..|.|...|..++.--.. |+.-++.|..-|+.++..+++.+.-|+
T Consensus 14 k~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL~ 66 (75)
T PF05531_consen 14 KAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDILN 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 56678899999999888876655 888888888888888887777666554
No 47
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=85.82 E-value=12 Score=27.55 Aligned_cols=65 Identities=11% Similarity=0.079 Sum_probs=40.2
Q ss_pred HhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHhcCC
Q 039203 39 HDNDKAIDGLKERAVFLKR-LTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSN 103 (125)
Q Consensus 39 ~eqD~~Ld~L~~~V~~LK~-ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~~~~ 103 (125)
.|-|..=+.|..-+..++. +-.+|+.|=..-......++..+..+..++......++.-+++..+
T Consensus 87 ~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~ 152 (177)
T PF07798_consen 87 REIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIESLKW 152 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444432 3445555555555677888888888888888888888888776443
No 48
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=84.80 E-value=10 Score=25.81 Aligned_cols=46 Identities=13% Similarity=0.250 Sum_probs=39.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhh
Q 039203 39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASR 84 (125)
Q Consensus 39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~ 84 (125)
.|+|..+-.|.......++--..|.+=+..|+...+.|+-.+|+..
T Consensus 7 ~e~e~Ri~rLEendk~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~ 52 (98)
T PF11166_consen 7 HEHEWRIRRLEENDKTIFNKLDEIKDGQHDQELVNQKLDRTLDEIN 52 (98)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHH
Confidence 3788889999999888888888999999999999999888888843
No 49
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=84.65 E-value=3.3 Score=26.54 Aligned_cols=51 Identities=14% Similarity=0.093 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHhcCC--cceehHHHHHHHHHHHHHHH
Q 039203 66 VESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSN--RRICTLVGSFVVSFFVLYYL 123 (125)
Q Consensus 66 l~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~~~~--~~~~~lI~~lvviflvly~l 123 (125)
.++=++-||++++.++.+.+-+. +-..++-+ -++.|-+++.+++|+++..+
T Consensus 14 ~~~i~~rLd~iEeKvEf~~~Ei~-------Qr~GkkiGRDiGIlYG~v~Glii~~~~~~l 66 (70)
T PF04210_consen 14 FNEIMKRLDEIEEKVEFTNAEIA-------QRAGKKIGRDIGILYGLVIGLIIFIIYIVL 66 (70)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHH-------HHHhHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33334456666666666655432 22222212 24666555555555544433
No 50
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.25 E-value=3.9 Score=31.70 Aligned_cols=29 Identities=10% Similarity=0.173 Sum_probs=20.8
Q ss_pred HHHHhh---hHHHhhhhhhhhHHHHHHHHHHh
Q 039203 72 LLDRMG---NSMDASRGIMSGTMDRFKMVFEK 100 (125)
Q Consensus 72 lLD~l~---~~~d~t~~~L~~t~~rl~~v~~~ 100 (125)
+|.+|. +...++..+|..+...+.+-.+.
T Consensus 154 IL~dL~~QRe~L~rar~rL~~td~~lgkS~ki 185 (220)
T KOG1666|consen 154 ILEDLHGQREQLERARERLRETDANLGKSRKI 185 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchhhhhHHHHH
Confidence 677776 45677778888888877776553
No 51
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.87 E-value=10 Score=24.45 Aligned_cols=50 Identities=10% Similarity=0.234 Sum_probs=37.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhh
Q 039203 39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMS 88 (125)
Q Consensus 39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~ 88 (125)
.+-++++.+|..++...-..=..+++-|.+|-..+|.+...++...++++
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~ 53 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLK 53 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999888877778888888888777766666555544443
No 52
>PF15106 TMEM156: TMEM156 protein family
Probab=82.14 E-value=0.89 Score=35.14 Aligned_cols=20 Identities=10% Similarity=0.291 Sum_probs=15.1
Q ss_pred eehHHHHHHHHHHHHHHHhC
Q 039203 106 ICTLVGSFVVSFFVLYYLIR 125 (125)
Q Consensus 106 ~~~lI~~lvviflvly~l~k 125 (125)
.||+.+++|++|++++++.|
T Consensus 177 TWYvLVllVfiflii~iI~K 196 (226)
T PF15106_consen 177 TWYVLVLLVFIFLIILIIYK 196 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67777777888888887765
No 53
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=80.82 E-value=20 Score=28.49 Aligned_cols=74 Identities=11% Similarity=0.151 Sum_probs=42.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHhcCCc-ceehHHHHHHHH
Q 039203 38 EHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNR-RICTLVGSFVVS 116 (125)
Q Consensus 38 e~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~~~~~-~~~~lI~~lvvi 116 (125)
++|.-+.+..++.-|.-...+--.|.+ -+-+...++....+.+.++.+-....-++.=.| ++|++|+.++++
T Consensus 194 ~ael~qLfndm~~~V~eq~e~Vd~I~~-------~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~c~gI~~iii~viv~ 266 (280)
T COG5074 194 MAELTQLFNDMEELVIEQQENVDVIDK-------NVEDAQENVEQGVGHTDKAVKSARAARKKKIRCYGICFIIIIVIVV 266 (280)
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHh-------hHhhHHhhHHHhhhhHHHHHHHHHHHHhcceehhhhHHHHHHHHHH
Confidence 345555555555555544444444443 344556667777777777777777777776555 466654444443
Q ss_pred HH
Q 039203 117 FF 118 (125)
Q Consensus 117 fl 118 (125)
|+
T Consensus 267 vv 268 (280)
T COG5074 267 VV 268 (280)
T ss_pred HH
Confidence 33
No 54
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=80.07 E-value=7 Score=25.03 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhhhHHHhhhhhh
Q 039203 65 EVESHNRLLDRMGNSMDASRGIM 87 (125)
Q Consensus 65 El~~Qn~lLD~l~~~~d~t~~~L 87 (125)
|.++=.+-||++++.++.|.+-+
T Consensus 13 d~~~i~~rLd~iEeKVEf~~~E~ 35 (70)
T TIGR01149 13 EFNEVMKRLDEIEEKVEFVNGEV 35 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445677776666665543
No 55
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=79.17 E-value=18 Score=24.93 Aligned_cols=81 Identities=14% Similarity=0.047 Sum_probs=46.1
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh-cCCcceehHHHH
Q 039203 35 GIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESH-NRLLDRMGNSMDASRGIMSGTMDRFKMVFEK-KSNRRICTLVGS 112 (125)
Q Consensus 35 ~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Q-n~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~-~~~~~~~~lI~~ 112 (125)
+.++.|--+.+|.+.+-.+.--..|.+=..|++.+ +..|.+..+.+..+...+-...+....-... -..+.||.+-+.
T Consensus 11 ~~l~~el~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~tD~yV~e~PWq~VGva 90 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKSSGSLAGDEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAADATDDYVRENPWQGVGVA 90 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 45555555566666655555555666666677766 5688888888888865444444333333222 234556665433
Q ss_pred HHH
Q 039203 113 FVV 115 (125)
Q Consensus 113 lvv 115 (125)
..+
T Consensus 91 AaV 93 (104)
T COG4575 91 AAV 93 (104)
T ss_pred HHH
Confidence 333
No 56
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.50 E-value=23 Score=28.67 Aligned_cols=17 Identities=12% Similarity=0.270 Sum_probs=6.8
Q ss_pred eehHHHHHHHHHHHHHH
Q 039203 106 ICTLVGSFVVSFFVLYY 122 (125)
Q Consensus 106 ~~~lI~~lvviflvly~ 122 (125)
+|+++++++++++++|+
T Consensus 273 i~ii~~iii~~v~v~~i 289 (297)
T KOG0810|consen 273 IIIIILIIIIVVLVVVI 289 (297)
T ss_pred eeehHHHHHHHHHhhhh
Confidence 33333444444444443
No 57
>PHA02650 hypothetical protein; Provisional
Probab=77.47 E-value=1.7 Score=28.54 Aligned_cols=15 Identities=0% Similarity=0.127 Sum_probs=6.3
Q ss_pred HhhhHHHhhhhhhhh
Q 039203 75 RMGNSMDASRGIMSG 89 (125)
Q Consensus 75 ~l~~~~d~t~~~L~~ 89 (125)
.-+++|++--+-++.
T Consensus 15 S~DdDFnnFI~VVkS 29 (81)
T PHA02650 15 STDDDFNNFIDVVKS 29 (81)
T ss_pred CcHHHHHHHHHHHHH
Confidence 334444444443333
No 58
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=76.51 E-value=18 Score=24.07 Aligned_cols=30 Identities=7% Similarity=0.183 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039203 44 AIDGLKERAVFLKRLTGDIHEEVESHNRLL 73 (125)
Q Consensus 44 ~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lL 73 (125)
.+|.|++.|+.|+.-...+..+++.=..-.
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa 54 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQI 54 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555544444433333
No 59
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=75.76 E-value=4.9 Score=27.45 Aligned_cols=29 Identities=28% Similarity=0.555 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 039203 53 VFLKRLTGDIHEEVESHNRLLDRMGNSMD 81 (125)
Q Consensus 53 ~~LK~ia~~I~~El~~Qn~lLD~l~~~~d 81 (125)
.+|+.+-..+..|++.|.+-||+++..++
T Consensus 72 EqL~~Lk~kl~~e~~~~~k~i~~le~~I~ 100 (100)
T PF04568_consen 72 EQLKKLKEKLKEEIEHHRKEIDELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34555556677888889999999987754
No 60
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=75.55 E-value=11 Score=24.60 Aligned_cols=22 Identities=9% Similarity=0.250 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhhhHHHhhhhhh
Q 039203 66 VESHNRLLDRMGNSMDASRGIM 87 (125)
Q Consensus 66 l~~Qn~lLD~l~~~~d~t~~~L 87 (125)
.++=++-||++++.++.|.+-+
T Consensus 17 ~~~i~~rLD~iEeKVEftn~Ei 38 (77)
T PRK01026 17 FKEIQKRLDEIEEKVEFTNAEI 38 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445677766666665443
No 61
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.78 E-value=27 Score=24.61 Aligned_cols=110 Identities=14% Similarity=0.083 Sum_probs=53.0
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhH
Q 039203 11 KGALFDEYDGLEEGGLKASSSYSSGIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGT 90 (125)
Q Consensus 11 r~~l~~~~~~~~~~~~~~~~~~~~~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t 90 (125)
|+..|+.+++.|...+-+.. +.+....+..|..=|+..++.+ +=-..+..=-=+.+.=++.=+.-+|..++...++
T Consensus 1 r~~R~g~~dg~~~l~~~~~~-a~ss~~~~~le~ENee~~e~L~---~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdst 76 (118)
T KOG3385|consen 1 RGSRFGLFDGSNGLEDGVSR-ASSSSHLASLERENEEAAESLQ---QKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDST 76 (118)
T ss_pred CCcccCcccCCCcccccccc-cCchhhHHHHHhhhHHHHHHHH---HHHHHHHHHHHHhccccchHHHHHHHhccchhhh
Confidence 45667777766633222222 3445555555555554444332 1111222111111222222233455556666777
Q ss_pred HHHHHHHHHh----cCCcceehHHHHHHHHHHHHHHHh
Q 039203 91 MDRFKMVFEK----KSNRRICTLVGSFVVSFFVLYYLI 124 (125)
Q Consensus 91 ~~rl~~v~~~----~~~~~~~~lI~~lvviflvly~l~ 124 (125)
...+...+.+ +...+.-.+.-..|++++++++++
T Consensus 77 s~~L~gtm~r~~~~ar~sg~~l~~~m~~f~lV~~fi~~ 114 (118)
T KOG3385|consen 77 SGFLSGTMGRLKTMARRSGISLLCWMAVFSLVAFFILW 114 (118)
T ss_pred HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhh
Confidence 7776666543 455445555555566777666654
No 62
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=74.75 E-value=21 Score=23.38 Aligned_cols=17 Identities=12% Similarity=0.368 Sum_probs=8.3
Q ss_pred ceehHHHHHHHHHHHHH
Q 039203 105 RICTLVGSFVVSFFVLY 121 (125)
Q Consensus 105 ~~~~lI~~lvviflvly 121 (125)
-++.+.+|+++|++|+|
T Consensus 73 i~~~~~~f~~~v~yI~~ 89 (92)
T PF03908_consen 73 IFFAFLFFLLVVLYILW 89 (92)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 33444555555555544
No 63
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=73.72 E-value=41 Score=26.31 Aligned_cols=46 Identities=24% Similarity=0.286 Sum_probs=22.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhHHHhh
Q 039203 38 EHDNDKAIDGLKERAVFLKRLTGDI-HEEVESHNRLLDRMGNSMDAS 83 (125)
Q Consensus 38 e~eqD~~Ld~L~~~V~~LK~ia~~I-~~El~~Qn~lLD~l~~~~d~t 83 (125)
++++|.+-..+..-.+.|+.-+.+. ..+...|++.++-+.+..+++
T Consensus 63 ~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V 109 (230)
T PF03904_consen 63 EEKQDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDELKDV 109 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555555544444444555444332 234555666555555544443
No 64
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=72.08 E-value=24 Score=24.50 Aligned_cols=61 Identities=13% Similarity=0.198 Sum_probs=43.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHH
Q 039203 39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFE 99 (125)
Q Consensus 39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~ 99 (125)
++-...+..+...|..|..+-..++...+....+=+.|++-++.+....+.+..+|+.+-.
T Consensus 9 ~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~ 69 (151)
T cd00179 9 EEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEE 69 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677888888888888888888777633346667777777777777777777776643
No 65
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=71.57 E-value=1.8 Score=34.88 Aligned_cols=20 Identities=20% Similarity=0.693 Sum_probs=15.4
Q ss_pred eehHHHHHHHHHHHHHHHhC
Q 039203 106 ICTLVGSFVVSFFVLYYLIR 125 (125)
Q Consensus 106 ~~~lI~~lvviflvly~l~k 125 (125)
++++|.+++++.||.||+||
T Consensus 280 iil~IG~vl~i~~Ig~~ifK 299 (305)
T PF04639_consen 280 IILIIGGVLLIVFIGYFIFK 299 (305)
T ss_pred HHHHHHHHHHHHHhhheeeE
Confidence 45567777888888888887
No 66
>PHA02819 hypothetical protein; Provisional
Probab=70.77 E-value=2.4 Score=27.23 Aligned_cols=21 Identities=0% Similarity=0.219 Sum_probs=11.5
Q ss_pred HHHhhhHHHhhhhhhhhHHHH
Q 039203 73 LDRMGNSMDASRGIMSGTMDR 93 (125)
Q Consensus 73 LD~l~~~~d~t~~~L~~t~~r 93 (125)
+..-+++|++--+-++.+..-
T Consensus 13 msS~DdDFnnFI~VVksVLtd 33 (71)
T PHA02819 13 MSSSDDDFNNFINVVKSVLNN 33 (71)
T ss_pred hCCchhHHHHHHHHHHHHHcC
Confidence 344456666655555555554
No 67
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=70.74 E-value=22 Score=21.83 Aligned_cols=33 Identities=24% Similarity=0.279 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039203 44 AIDGLKERAVFLKRLTGDIHEEVESHNRLLDRM 76 (125)
Q Consensus 44 ~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l 76 (125)
.++.|++-|+.++.=.....+|...-|.-||.+
T Consensus 18 kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 18 KVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444444444445555555444444
No 68
>PHA03054 IMV membrane protein; Provisional
Probab=70.72 E-value=2.5 Score=27.15 Aligned_cols=14 Identities=7% Similarity=0.109 Sum_probs=6.1
Q ss_pred hhHHHhhhhhhhhH
Q 039203 77 GNSMDASRGIMSGT 90 (125)
Q Consensus 77 ~~~~d~t~~~L~~t 90 (125)
+++|++--+-++.+
T Consensus 17 d~Df~~Fi~vV~sV 30 (72)
T PHA03054 17 EDDLTDFIEIVKSV 30 (72)
T ss_pred hHHHHHHHHHHHHH
Confidence 44444444444333
No 69
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=69.64 E-value=23 Score=21.71 Aligned_cols=49 Identities=14% Similarity=0.204 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHH
Q 039203 43 KAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVF 98 (125)
Q Consensus 43 ~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~ 98 (125)
..+|.|+..|+.|+.---.|..|+..=.. ++..+..--.++..||....
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~-------~v~~ak~EAaRAN~RlDN~a 51 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRA-------DVQAAKEEAARANQRLDNIA 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhH
Confidence 46788888888888766666666655443 33344444455555555544
No 70
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=68.52 E-value=2.8 Score=27.71 Aligned_cols=10 Identities=10% Similarity=0.355 Sum_probs=4.1
Q ss_pred HHHHhcCCcc
Q 039203 96 MVFEKKSNRR 105 (125)
Q Consensus 96 ~v~~~~~~~~ 105 (125)
++++++.++.
T Consensus 3 ~i~kK~K~k~ 12 (96)
T PF13800_consen 3 KILKKAKRKS 12 (96)
T ss_pred hHHHHHHHHH
Confidence 3444443333
No 71
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=67.87 E-value=4.2 Score=30.04 Aligned_cols=19 Identities=5% Similarity=0.258 Sum_probs=13.0
Q ss_pred eehHHHHHHHHHHHHHHHh
Q 039203 106 ICTLVGSFVVSFFVLYYLI 124 (125)
Q Consensus 106 ~~~lI~~lvviflvly~l~ 124 (125)
+|.+|.|++++|++.||.+
T Consensus 30 ~~~~inflil~~iL~~f~~ 48 (184)
T PRK13455 30 FVVTLAFLLFIGILVYFKV 48 (184)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4556777777777777753
No 72
>PHA02844 putative transmembrane protein; Provisional
Probab=67.74 E-value=8.6 Score=24.96 Aligned_cols=12 Identities=0% Similarity=0.083 Sum_probs=5.0
Q ss_pred hhhHHHhhhhhh
Q 039203 76 MGNSMDASRGIM 87 (125)
Q Consensus 76 l~~~~d~t~~~L 87 (125)
-+++|++--+-+
T Consensus 16 ~DdDFnnFI~vV 27 (75)
T PHA02844 16 ENEDFNNFIDVV 27 (75)
T ss_pred chHHHHHHHHHH
Confidence 344444443333
No 73
>PRK15396 murein lipoprotein; Provisional
Probab=67.31 E-value=32 Score=22.42 Aligned_cols=26 Identities=12% Similarity=0.164 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039203 50 ERAVFLKRLTGDIHEEVESHNRLLDR 75 (125)
Q Consensus 50 ~~V~~LK~ia~~I~~El~~Qn~lLD~ 75 (125)
+.++.++.-+....+|...=|.-||.
T Consensus 46 ~dv~~~~~~~~~a~~eA~raN~RlDn 71 (78)
T PRK15396 46 NDVNAMRSDVQAAKDDAARANQRLDN 71 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444443333
No 74
>PHA03386 P10 fibrous body protein; Provisional
Probab=67.12 E-value=19 Score=24.37 Aligned_cols=46 Identities=13% Similarity=0.243 Sum_probs=36.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhh
Q 039203 39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMS 88 (125)
Q Consensus 39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~ 88 (125)
.+-|..++.|..+|..++.- ++-++.|..-|++++..+++.+.-|+
T Consensus 15 kavd~KVdaLQ~qV~dv~~n----~~~LDa~~~qL~~l~tkV~~Iq~iLn 60 (94)
T PHA03386 15 QEVDTKVDALQTQLNGLEED----SQPLDGLPAQLTELDTKVSDIQSILT 60 (94)
T ss_pred HHHhhHHHHHHHHHHHHHhc----chhhhhHHHHHHHHHHHHHHHHHhcC
Confidence 56778888899888888765 45588888888888888887776655
No 75
>PHA02975 hypothetical protein; Provisional
Probab=65.85 E-value=10 Score=24.25 Aligned_cols=8 Identities=0% Similarity=0.015 Sum_probs=3.2
Q ss_pred hhHHHhhh
Q 039203 77 GNSMDASR 84 (125)
Q Consensus 77 ~~~~d~t~ 84 (125)
+++|++--
T Consensus 17 DdDF~nFI 24 (69)
T PHA02975 17 DSDFEDFI 24 (69)
T ss_pred hHHHHHHH
Confidence 34444433
No 76
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=65.59 E-value=36 Score=22.47 Aligned_cols=37 Identities=8% Similarity=0.268 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHH
Q 039203 62 IHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVF 98 (125)
Q Consensus 62 I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~ 98 (125)
+-.|++....=.+.+...-..+..+|..++..|.-++
T Consensus 51 La~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~vL 87 (89)
T PF13747_consen 51 LAQELDQAEARANRLEEANREVSRRLDSAIETIRAVL 87 (89)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444444555555555554443
No 77
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=65.40 E-value=54 Score=24.34 Aligned_cols=61 Identities=13% Similarity=0.250 Sum_probs=53.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHH
Q 039203 39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFE 99 (125)
Q Consensus 39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~ 99 (125)
.+.+..|..|...+..|+.--.+...|+++.++.+..+.+.+....-.++-.-.++.++-.
T Consensus 112 ~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 112 SEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677788999999999999999999999999999999999999999888888888888744
No 78
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=65.36 E-value=4.8 Score=31.63 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=13.6
Q ss_pred cceehHHHHHHHHHHHHHHHh
Q 039203 104 RRICTLVGSFVVSFFVLYYLI 124 (125)
Q Consensus 104 ~~~~~lI~~lvviflvly~l~ 124 (125)
.+|+..+++++++++++|+++
T Consensus 200 ~g~f~wl~i~~~l~~~~Y~i~ 220 (268)
T PF09451_consen 200 WGFFTWLFIILFLFLAAYLIF 220 (268)
T ss_pred ccHHHHHHHHHHHHHHHHhhh
Confidence 344445566667777888876
No 79
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=65.03 E-value=4.4 Score=28.62 Aligned_cols=8 Identities=13% Similarity=0.555 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 039203 116 SFFVLYYL 123 (125)
Q Consensus 116 iflvly~l 123 (125)
++|++|++
T Consensus 81 Illi~y~i 88 (122)
T PF01102_consen 81 ILLISYCI 88 (122)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 80
>PHA03395 p10 fibrous body protein; Provisional
Probab=64.92 E-value=24 Score=23.55 Aligned_cols=49 Identities=16% Similarity=0.308 Sum_probs=36.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHhhhhhh
Q 039203 39 HDNDKAIDGLKERAVFLKRLT---GDIHEEVESHNRLLDRMGNSMDASRGIM 87 (125)
Q Consensus 39 ~eqD~~Ld~L~~~V~~LK~ia---~~I~~El~~Qn~lLD~l~~~~d~t~~~L 87 (125)
.+-|..+|.|...|..++.-- ..|++-++.|..-|+.++..++.-..-|
T Consensus 14 kavd~KVdalQ~~V~~l~~nlpdv~~l~~kLdaq~~~Ltti~tkv~~I~diL 65 (87)
T PHA03395 14 KAVSDKVDALQAAVDDVRANLPDVTEINEKLDAQSASLDTISSAVDNITDIL 65 (87)
T ss_pred HHHhhHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHHHHHHHHHHHHHcc
Confidence 566778888888888887444 3677778888888888887777655544
No 81
>PHA02692 hypothetical protein; Provisional
Probab=64.66 E-value=12 Score=23.96 Aligned_cols=14 Identities=7% Similarity=0.133 Sum_probs=5.9
Q ss_pred hhHHHhhhhhhhhH
Q 039203 77 GNSMDASRGIMSGT 90 (125)
Q Consensus 77 ~~~~d~t~~~L~~t 90 (125)
+++|++--+-++.+
T Consensus 17 DdDF~~Fi~vVksV 30 (70)
T PHA02692 17 DEDFEEFLNIVRTV 30 (70)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444443333
No 82
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=64.33 E-value=58 Score=26.24 Aligned_cols=78 Identities=18% Similarity=0.210 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHH---HHhcCCc----ceehHHHHHHHHHH
Q 039203 46 DGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMV---FEKKSNR----RICTLVGSFVVSFF 118 (125)
Q Consensus 46 d~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v---~~~~~~~----~~~~lI~~lvvifl 118 (125)
.+..+.|..|..=-.+.+.=..+=..+..+=+.-+|+.+-.+.++.-.++.. +.++... .=|-++++++++.+
T Consensus 191 ~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~~Llil~vv 270 (283)
T COG5325 191 TERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFYLLLILLVV 270 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhhHHHHHHHH
Confidence 3334444444333333333334444555556666777777777776666555 3344332 27888888888888
Q ss_pred HHHHH
Q 039203 119 VLYYL 123 (125)
Q Consensus 119 vly~l 123 (125)
+++++
T Consensus 271 ~lfv~ 275 (283)
T COG5325 271 LLFVS 275 (283)
T ss_pred HHHHH
Confidence 77775
No 83
>PRK11637 AmiB activator; Provisional
Probab=64.14 E-value=82 Score=26.17 Aligned_cols=39 Identities=8% Similarity=0.176 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHH
Q 039203 61 DIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFE 99 (125)
Q Consensus 61 ~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~ 99 (125)
.+..+++..+.-|+.++...+.....+....+.+++.+.
T Consensus 93 ~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlr 131 (428)
T PRK11637 93 ETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLD 131 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555556666655555655554
No 84
>PF10831 DUF2556: Protein of unknown function (DUF2556); InterPro: IPR022540 This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.
Probab=63.67 E-value=6.7 Score=23.42 Aligned_cols=16 Identities=31% Similarity=0.268 Sum_probs=11.0
Q ss_pred cceehHHHHHHHHHHH
Q 039203 104 RRICTLVGSFVVSFFV 119 (125)
Q Consensus 104 ~~~~~lI~~lvviflv 119 (125)
++.+|+|+|.+.+|++
T Consensus 3 rky~wlvvfav~~flf 18 (53)
T PF10831_consen 3 RKYWWLVVFAVFVFLF 18 (53)
T ss_pred ceehhHHHHHHHHHHH
Confidence 4467778888777654
No 85
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=63.45 E-value=71 Score=25.03 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=13.4
Q ss_pred chhHHhHHHHHHHHHHHHHHH
Q 039203 35 GIDEHDNDKAIDGLKERAVFL 55 (125)
Q Consensus 35 ~~le~eqD~~Ld~L~~~V~~L 55 (125)
+..+.+++.....|.++.+-.
T Consensus 67 d~reK~~~~I~ssL~eTtkdf 87 (230)
T PF03904_consen 67 DIREKNLKEIKSSLEETTKDF 87 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566677777666666655443
No 86
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=63.30 E-value=8.4 Score=24.85 Aligned_cols=15 Identities=0% Similarity=0.120 Sum_probs=6.4
Q ss_pred hhhHHHhhhhhhhhH
Q 039203 76 MGNSMDASRGIMSGT 90 (125)
Q Consensus 76 l~~~~d~t~~~L~~t 90 (125)
-+++|++--+-++.+
T Consensus 16 ~ddDf~~Fi~vVksV 30 (72)
T PF12575_consen 16 SDDDFNNFINVVKSV 30 (72)
T ss_pred CHHHHHHHHHHHHHH
Confidence 344444444444433
No 87
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=63.23 E-value=35 Score=22.21 Aligned_cols=56 Identities=7% Similarity=0.189 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHH
Q 039203 43 KAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFE 99 (125)
Q Consensus 43 ~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~ 99 (125)
..|-.|...|+.|+.+...||.. .+-.++-+.+......+...++.+...|+.+..
T Consensus 3 ~~l~~in~~v~~l~k~~~~lGt~-~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~ 58 (102)
T PF14523_consen 3 SNLFKINQNVSQLEKLVNQLGTP-RDSQELREKIHQLIQKTNQLIKEISELLKKLNS 58 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-SS-S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhCCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888888865 333447777777777777777777777777644
No 88
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=63.04 E-value=5.9 Score=32.04 Aligned_cols=17 Identities=18% Similarity=0.507 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHhC
Q 039203 109 LVGSFVVSFFVLYYLIR 125 (125)
Q Consensus 109 lI~~lvviflvly~l~k 125 (125)
.|+++|+|++++|+++|
T Consensus 264 aIliIVLIMvIIYLILR 280 (299)
T PF02009_consen 264 AILIIVLIMVIIYLILR 280 (299)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555667777777763
No 89
>PRK10132 hypothetical protein; Provisional
Probab=62.66 E-value=48 Score=22.80 Aligned_cols=54 Identities=7% Similarity=0.052 Sum_probs=27.0
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHhhhhhhh
Q 039203 35 GIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESH-NRLLDRMGNSMDASRGIMS 88 (125)
Q Consensus 35 ~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Q-n~lLD~l~~~~d~t~~~L~ 88 (125)
..++++.++..++|..=+..+..+-..-.++..++ ..+=+.++..++.+..++.
T Consensus 8 ~~~~~q~e~L~~Dl~~L~~~le~ll~~~~~~~~~~~~~lR~r~~~~L~~ar~~l~ 62 (108)
T PRK10132 8 NDVDDGVQDIQNDVNQLADSLESVLKSWGSDAKGEAEAARRKAQALLKETRARMH 62 (108)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44666777777777777777654433333332222 2233344444444444444
No 90
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.56 E-value=73 Score=25.95 Aligned_cols=15 Identities=13% Similarity=0.189 Sum_probs=5.9
Q ss_pred hHHHHHHHHHHHHHH
Q 039203 108 TLVGSFVVSFFVLYY 122 (125)
Q Consensus 108 ~lI~~lvviflvly~ 122 (125)
|+++=++++++|+++
T Consensus 290 wLmvkiF~i~ivFfl 304 (311)
T KOG0812|consen 290 WLMVKIFGILIVFFL 304 (311)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334433444443333
No 91
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=62.37 E-value=7.4 Score=25.95 Aligned_cols=16 Identities=31% Similarity=0.588 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 039203 109 LVGSFVVSFFVLYYLI 124 (125)
Q Consensus 109 lI~~lvviflvly~l~ 124 (125)
+++|++++|||+.++.
T Consensus 46 LA~FV~~lF~iL~~ms 61 (90)
T PF15183_consen 46 LAAFVVFLFLILLYMS 61 (90)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5666777777776654
No 92
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=61.76 E-value=4.8 Score=33.54 Aligned_cols=16 Identities=25% Similarity=0.517 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHhC
Q 039203 110 VGSFVVSFFVLYYLIR 125 (125)
Q Consensus 110 I~~lvviflvly~l~k 125 (125)
|+..+|-||.||||.|
T Consensus 379 vVgglvGfLcWwf~cr 394 (397)
T PF03302_consen 379 VVGGLVGFLCWWFICR 394 (397)
T ss_pred HHHHHHHHHhhheeec
Confidence 3334556776666654
No 93
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=61.34 E-value=7 Score=29.72 Aligned_cols=14 Identities=14% Similarity=0.386 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 039203 110 VGSFVVSFFVLYYL 123 (125)
Q Consensus 110 I~~lvviflvly~l 123 (125)
++..++.|++|||+
T Consensus 56 l~w~~I~FliL~~l 69 (204)
T PRK09174 56 LLWLAITFGLFYLF 69 (204)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444443
No 94
>PRK10884 SH3 domain-containing protein; Provisional
Probab=61.30 E-value=71 Score=24.36 Aligned_cols=20 Identities=0% Similarity=0.091 Sum_probs=8.9
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q 039203 39 HDNDKAIDGLKERAVFLKRL 58 (125)
Q Consensus 39 ~eqD~~Ld~L~~~V~~LK~i 58 (125)
++.++...++.+++...++.
T Consensus 114 ~~~~~~~~~l~~~~~~~~~~ 133 (206)
T PRK10884 114 NTWNQRTAEMQQKVAQSDSV 133 (206)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 95
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.20 E-value=75 Score=24.60 Aligned_cols=13 Identities=8% Similarity=0.069 Sum_probs=5.3
Q ss_pred hhHHHHHHHHHHh
Q 039203 88 SGTMDRFKMVFEK 100 (125)
Q Consensus 88 ~~t~~rl~~v~~~ 100 (125)
+.|++-|++=...
T Consensus 177 n~ti~lIeRR~~~ 189 (213)
T KOG3251|consen 177 NQTIRLIERRVRE 189 (213)
T ss_pred HHHHHHHHHHHHh
Confidence 3344444443333
No 96
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=60.50 E-value=4.5 Score=34.90 Aligned_cols=26 Identities=15% Similarity=0.340 Sum_probs=15.8
Q ss_pred HHHhhhHHHhhhhhhhhHHHHHHHHH
Q 039203 73 LDRMGNSMDASRGIMSGTMDRFKMVF 98 (125)
Q Consensus 73 LD~l~~~~d~t~~~L~~t~~rl~~v~ 98 (125)
|+.++++.+++.+.|+++.+-++.+-
T Consensus 440 L~~vn~sL~~A~~~L~~Sn~iL~~v~ 465 (490)
T PF00523_consen 440 LGQVNNSLNNAKDLLDKSNQILDSVN 465 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555666666666666666666553
No 97
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=60.16 E-value=7.6 Score=28.78 Aligned_cols=16 Identities=19% Similarity=0.249 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 039203 109 LVGSFVVSFFVLYYLI 124 (125)
Q Consensus 109 lI~~lvviflvly~l~ 124 (125)
+|.|+++.|++-+|++
T Consensus 38 lI~F~iL~~ll~k~l~ 53 (181)
T PRK13454 38 LVTLVAIYFVLTRVAL 53 (181)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 98
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=59.76 E-value=7 Score=28.97 Aligned_cols=17 Identities=12% Similarity=0.485 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHh
Q 039203 108 TLVGSFVVSFFVLYYLI 124 (125)
Q Consensus 108 ~lI~~lvviflvly~l~ 124 (125)
..++..++.|++|||++
T Consensus 32 ~q~~~~lI~F~iL~~ll 48 (181)
T PRK13454 32 NQIFWLLVTLVAIYFVL 48 (181)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 35666677788888876
No 99
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=59.65 E-value=79 Score=25.27 Aligned_cols=23 Identities=9% Similarity=0.096 Sum_probs=15.2
Q ss_pred hhhhhHHHHHHHHHHhcCCccee
Q 039203 85 GIMSGTMDRFKMVFEKKSNRRIC 107 (125)
Q Consensus 85 ~~L~~t~~rl~~v~~~~~~~~~~ 107 (125)
..|...+..+.++++.+..++.|
T Consensus 51 ~~l~~~~~~L~~aL~~~k~rG~w 73 (304)
T PF02646_consen 51 QQLSQEASNLTSALKNSKTRGNW 73 (304)
T ss_pred HHHHHHHHHHHHHHhCCCchhhH
Confidence 56777777788887755455544
No 100
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=59.49 E-value=8.7 Score=25.49 Aligned_cols=10 Identities=20% Similarity=0.634 Sum_probs=4.4
Q ss_pred eehHHHHHHH
Q 039203 106 ICTLVGSFVV 115 (125)
Q Consensus 106 ~~~lI~~lvv 115 (125)
.|++++|++.
T Consensus 40 ic~~lVfVii 49 (84)
T PF06143_consen 40 ICCFLVFVII 49 (84)
T ss_pred HHHHHHHHHH
Confidence 4554444433
No 101
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=58.80 E-value=6.6 Score=28.97 Aligned_cols=18 Identities=17% Similarity=0.353 Sum_probs=7.5
Q ss_pred cceehHHHHHHHHHHHHH
Q 039203 104 RRICTLVGSFVVSFFVLY 121 (125)
Q Consensus 104 ~~~~~lI~~lvviflvly 121 (125)
.++|++++.+|++.+++|
T Consensus 29 thm~tILiaIvVliiiii 46 (189)
T PF05568_consen 29 THMYTILIAIVVLIIIII 46 (189)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345554433333333333
No 102
>PRK04654 sec-independent translocase; Provisional
Probab=58.69 E-value=84 Score=24.36 Aligned_cols=54 Identities=13% Similarity=0.059 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhhhHHHhhhhhhhhHHHHHHH
Q 039203 43 KAIDGLKERAVFLKRLTGDIHEEVESHNR------LLDRMGNSMDASRGIMSGTMDRFKM 96 (125)
Q Consensus 43 ~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~------lLD~l~~~~d~t~~~L~~t~~rl~~ 96 (125)
+..-.+...+..+|....++.+|++..-+ .|.++...+......++.+++.++.
T Consensus 27 e~aRtlGk~irk~R~~~~~vk~El~~El~~~ELrk~l~~~~~~i~~~~~~lk~~~~el~q 86 (214)
T PRK04654 27 KAARFAGLWVRRARMQWDSVKQELERELEAEELKRSLQDVQASLREAEDQLRNTQQQVEQ 86 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777888888888888887766543 2333333444444444445554443
No 103
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=58.45 E-value=34 Score=22.65 Aligned_cols=30 Identities=17% Similarity=0.299 Sum_probs=13.2
Q ss_pred HHHHHHhhhHHHhhhhhhhhHHHHHHHHHH
Q 039203 70 NRLLDRMGNSMDASRGIMSGTMDRFKMVFE 99 (125)
Q Consensus 70 n~lLD~l~~~~d~t~~~L~~t~~rl~~v~~ 99 (125)
|.+||.|+.-+|....+-.....++..++.
T Consensus 32 ns~LD~Lns~LD~LE~rnD~l~~~L~~LLe 61 (83)
T PF03670_consen 32 NSMLDQLNSCLDHLEQRNDHLHAQLQELLE 61 (83)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 104
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=58.41 E-value=13 Score=31.73 Aligned_cols=93 Identities=15% Similarity=0.135 Sum_probs=69.2
Q ss_pred ccccccccccCCCCCCCCC-CCCCCCC---CCCc-chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 039203 5 REHRASKGALFDEYDGLEE-GGLKASS---SYSS-GIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNS 79 (125)
Q Consensus 5 ~~~~~~r~~l~~~~~~~~~-~~~~~~~---~~~~-~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~ 79 (125)
++-+..|.+|++-|++++. ..|-... +.++ ..||+--.....+|++..=.+..++....+-|+.|-..|..|+..
T Consensus 12 ~eIp~gR~al~~s~~nL~rVadycednYiQs~~kk~aleetk~~ttQslasvaYqIN~la~~~l~mL~lQ~~~L~~mEs~ 91 (483)
T KOG2546|consen 12 SEIPDGRKALRSSYDNLPRVADYCEDNYIQSADKKAALEETKAYTTQSLASVAYQINTLAGHALRMLDLQAPQLRYMESQ 91 (483)
T ss_pred HhccccHHHHHHHHHhhHhhhhhhhhchhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3447778889998888875 3443333 1222 677776666777788877778888888889999999999999999
Q ss_pred HHhhhhhhhhHHHHHHHH
Q 039203 80 MDASRGIMSGTMDRFKMV 97 (125)
Q Consensus 80 ~d~t~~~L~~t~~rl~~v 97 (125)
|+.....+.--..++.+.
T Consensus 92 vn~isq~V~ihkekvArr 109 (483)
T KOG2546|consen 92 VNHISQTVDIHKEKVARR 109 (483)
T ss_pred hhhhhhhheecchhhhhh
Confidence 999988877665555554
No 105
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.36 E-value=34 Score=26.43 Aligned_cols=13 Identities=15% Similarity=0.184 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 039203 46 DGLKERAVFLKRL 58 (125)
Q Consensus 46 d~L~~~V~~LK~i 58 (125)
..+.+.|+.+|.+
T Consensus 128 skvkaqv~evk~v 140 (217)
T KOG0859|consen 128 AKVKAQVTEVKGV 140 (217)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444445544
No 106
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=58.12 E-value=67 Score=23.37 Aligned_cols=61 Identities=10% Similarity=0.176 Sum_probs=30.9
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHhcCCcceehHHHHHHHHHHHHHH
Q 039203 53 VFLKRLTGDI-HEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLVGSFVVSFFVLYY 122 (125)
Q Consensus 53 ~~LK~ia~~I-~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~~~~~~~~~lI~~lvviflvly~ 122 (125)
..|++++..+ ....+.|.+.|+-....+ +........-.+ ...++|-..++++.+|+++.+
T Consensus 108 e~L~~lg~~LG~~D~~~Q~k~i~l~~~~L-------~~~~~~a~~~~~--~~~Klyr~LGvl~G~~lvIlL 169 (170)
T PF09548_consen 108 EILLELGKSLGYSDREMQEKHIELYLEQL-------EQQLEEAREEAK--KKGKLYRSLGVLGGLFLVILL 169 (170)
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHH-------HHHHHHHHHHHH--hcccHHHHHHHHHHHHHHHHh
Confidence 3355666666 345566665554443333 333333333222 234456666666667666654
No 107
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=57.86 E-value=10 Score=25.49 Aligned_cols=18 Identities=6% Similarity=0.462 Sum_probs=9.6
Q ss_pred eeh-HHHHHHHHHHHHHHH
Q 039203 106 ICT-LVGSFVVSFFVLYYL 123 (125)
Q Consensus 106 ~~~-lI~~lvviflvly~l 123 (125)
+++ +|++++++.+++|+.
T Consensus 35 m~~lvI~~iFil~Vilwfv 53 (94)
T PF05393_consen 35 MWFLVICGIFILLVILWFV 53 (94)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 444 445555565666653
No 108
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=57.73 E-value=14 Score=20.96 Aligned_cols=13 Identities=8% Similarity=0.518 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 039203 111 GSFVVSFFVLYYL 123 (125)
Q Consensus 111 ~~lvviflvly~l 123 (125)
+|+|++.++++|+
T Consensus 18 lflv~imliif~f 30 (43)
T PF11395_consen 18 LFLVIIMLIIFWF 30 (43)
T ss_pred HHHHHHHHHHHHH
Confidence 4445555544443
No 109
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=57.25 E-value=53 Score=21.60 Aligned_cols=59 Identities=10% Similarity=0.243 Sum_probs=35.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHH
Q 039203 39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMV 97 (125)
Q Consensus 39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v 97 (125)
++-...+..|...|..|+.+-..+....+.-..+=++|+...+.+....+.+..+|+.+
T Consensus 11 ~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l 69 (117)
T smart00503 11 EEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKEL 69 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555677777777777777777776554222333455555555555555555555554
No 110
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=56.75 E-value=4.5 Score=35.69 Aligned_cols=44 Identities=14% Similarity=0.270 Sum_probs=14.3
Q ss_pred hHHhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhhHH
Q 039203 37 DEHDNDKAIDGLKERAVFLK------RLTGDIHEEVESHNRLLDRMGNSM 80 (125)
Q Consensus 37 le~eqD~~Ld~L~~~V~~LK------~ia~~I~~El~~Qn~lLD~l~~~~ 80 (125)
..+|-|+.+..+...+-.|. .--.++..|++.=++.++.|++.+
T Consensus 482 fnkel~e~~~n~n~t~P~l~~l~~fN~T~LNLt~EI~~Lq~~I~~LN~tl 531 (610)
T PF01601_consen 482 FNKELDEIFKNLNSTLPNLDDLDIFNQTYLNLTSEIDELQEVIDNLNNTL 531 (610)
T ss_dssp -----------S------HHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred hHHHHHHHHHhcCCCCCCCCchhhcccceeccHHHHHHHHHHHHHhhhhh
Confidence 34666666666666666665 122566777755455555555444
No 111
>PRK11637 AmiB activator; Provisional
Probab=56.53 E-value=1.2e+02 Score=25.29 Aligned_cols=33 Identities=6% Similarity=0.158 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHH
Q 039203 65 EVESHNRLLDRMGNSMDASRGIMSGTMDRFKMV 97 (125)
Q Consensus 65 El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v 97 (125)
+++.-+.-|+.++..++.+...+.....++...
T Consensus 90 ~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 90 KLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444
No 112
>PHA03240 envelope glycoprotein M; Provisional
Probab=56.19 E-value=9.9 Score=29.74 Aligned_cols=16 Identities=6% Similarity=0.420 Sum_probs=6.6
Q ss_pred eehHHHHHHHHHHHHH
Q 039203 106 ICTLVGSFVVSFFVLY 121 (125)
Q Consensus 106 ~~~lI~~lvviflvly 121 (125)
.|++|++++++++||+
T Consensus 214 ~WIiilIIiIiIIIL~ 229 (258)
T PHA03240 214 AWIFIAIIIIIVIILF 229 (258)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3444444444433333
No 113
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=56.14 E-value=11 Score=25.76 Aligned_cols=18 Identities=33% Similarity=0.600 Sum_probs=10.9
Q ss_pred ehHHHHHHHHHHHHHHHh
Q 039203 107 CTLVGSFVVSFFVLYYLI 124 (125)
Q Consensus 107 ~~lI~~lvviflvly~l~ 124 (125)
+..+++++++|+++||+.
T Consensus 18 ~~~ll~lvii~~i~yf~~ 35 (106)
T PRK05585 18 LSSLLPLVVFFAIFYFLI 35 (106)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 444556666667777653
No 114
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=55.92 E-value=13 Score=22.95 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=11.1
Q ss_pred ehHHHHHHHHHHHHHHH
Q 039203 107 CTLVGSFVVSFFVLYYL 123 (125)
Q Consensus 107 ~~lI~~lvviflvly~l 123 (125)
..+|+|+.++|+.++++
T Consensus 16 ~lLiliis~~f~lI~~l 32 (61)
T PF06692_consen 16 PLLILIISFVFFLITSL 32 (61)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 34566667777777765
No 115
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=54.88 E-value=11 Score=27.82 Aligned_cols=17 Identities=24% Similarity=0.241 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhC
Q 039203 109 LVGSFVVSFFVLYYLIR 125 (125)
Q Consensus 109 lI~~lvviflvly~l~k 125 (125)
+|-|+++++++.||++|
T Consensus 31 ~Inflill~lL~~fl~k 47 (184)
T CHL00019 31 LINLSVVLGVLIYFGKG 47 (184)
T ss_pred HHHHHHHHHHHHHHhHh
Confidence 67777888888888775
No 116
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=54.48 E-value=12 Score=24.81 Aligned_cols=15 Identities=13% Similarity=0.093 Sum_probs=5.9
Q ss_pred ehHHHHHHHHHHHHH
Q 039203 107 CTLVGSFVVSFFVLY 121 (125)
Q Consensus 107 ~~lI~~lvviflvly 121 (125)
+..|++++||++++.
T Consensus 27 lMtILivLVIIiLlI 41 (85)
T PF10717_consen 27 LMTILIVLVIIILLI 41 (85)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444333333
No 117
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=54.31 E-value=32 Score=23.32 Aligned_cols=20 Identities=0% Similarity=0.111 Sum_probs=12.8
Q ss_pred hhhhhHHHHHHHHHHhcCCc
Q 039203 85 GIMSGTMDRFKMVFEKKSNR 104 (125)
Q Consensus 85 ~~L~~t~~rl~~v~~~~~~~ 104 (125)
.....+..+++..++++-..
T Consensus 33 ~ef~~iI~~IN~~l~~a~~~ 52 (118)
T PF10256_consen 33 EEFEEIINTINQILKEAFEP 52 (118)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 34556677777777776444
No 118
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=54.24 E-value=1.1e+02 Score=24.16 Aligned_cols=58 Identities=14% Similarity=0.118 Sum_probs=26.3
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHH
Q 039203 37 DEHDNDKAIDGLKERAVFLKRLTGDIHEE-VESHNRLLDRMGNSMDASRGIMSGTMDRFKMVF 98 (125)
Q Consensus 37 le~eqD~~Ld~L~~~V~~LK~ia~~I~~E-l~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~ 98 (125)
.-+.||-.-++|+++...| |.-...- +.-|+ -|++=+.....+...+......+...-
T Consensus 145 ~l~~q~~lQeeLaesll~L---ArslKtnalAfqs-alkeDnQvl~~~~k~~D~N~~~L~~~S 203 (244)
T KOG2678|consen 145 QLEDQDTLQEELAESLLKL---ARSLKTNALAFQS-ALKEDNQVLGAAEKGIDVNSQGLMDVS 203 (244)
T ss_pred HHHhhhHHHHHHHHHHHHH---HHHHHHhHHHHHH-HHHhhHHHHHHHHHHHhHHHHHHHhhh
Confidence 3344444444554444333 3333222 22333 355555555555555555555555443
No 119
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=53.97 E-value=80 Score=22.69 Aligned_cols=54 Identities=11% Similarity=0.210 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHH
Q 039203 44 AIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMV 97 (125)
Q Consensus 44 ~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v 97 (125)
.++.+...+.........+..++......+.++...|......+......+..+
T Consensus 101 ~i~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~i~~~~~~i~~~i~~i 154 (213)
T PF00015_consen 101 IIEEIQEQISQVVESMEESREQIEEGSESVEETSESLEEIAESVEEISDSIEEI 154 (213)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhhhhhhcchhhhhhhcccchhcchhhhhhhhhhhHHhhhhHHH
Confidence 333333333333333344444444444444444444444444443333333333
No 120
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=53.89 E-value=57 Score=20.98 Aligned_cols=23 Identities=13% Similarity=0.336 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhhhHHHhhhhh
Q 039203 64 EEVESHNRLLDRMGNSMDASRGI 86 (125)
Q Consensus 64 ~El~~Qn~lLD~l~~~~d~t~~~ 86 (125)
+|.++-++-||+++..++.|...
T Consensus 15 ~dfne~~kRLdeieekvef~~~E 37 (75)
T COG4064 15 DDFNEIHKRLDEIEEKVEFVNGE 37 (75)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHH
Confidence 35555566677777777666544
No 121
>PF05440 MtrB: Tetrahydromethanopterin S-methyltransferase subunit B; InterPro: IPR008690 The N5-methyltetrahydromethanopterin: coenzyme M (2.1.1.86 from EC) of Methanosarcina mazei Go1 is a membrane-associated, corrinoid-containing protein that uses a transmethylation reaction to drive an energy-conserving sodium ion pump [].; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=53.51 E-value=7.9 Score=26.37 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHH
Q 039203 62 IHEEVESHNRLLDRMGNSMDASRGIMSGTMDR 93 (125)
Q Consensus 62 I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~r 93 (125)
|.+|++.=.+.-|++.++.|=...-++.=-.|
T Consensus 35 i~eqi~kLe~~addl~nsLdP~~~~l~S~PgR 66 (97)
T PF05440_consen 35 INEQIDKLEKAADDLVNSLDPRTPPLNSFPGR 66 (97)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCccccCCCC
Confidence 44555555555666666666666655544444
No 122
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=53.46 E-value=78 Score=22.41 Aligned_cols=57 Identities=14% Similarity=0.237 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHH-HHHHH---HHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHH
Q 039203 41 NDKAIDGLKERAVFLK-RLTGD---IHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMV 97 (125)
Q Consensus 41 qD~~Ld~L~~~V~~LK-~ia~~---I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v 97 (125)
--.+|+.++++++.-| +++.. ....+++|.++...+.+++..+...+......++.+
T Consensus 48 v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v 108 (126)
T PF07889_consen 48 VSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSV 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3445666666666543 44444 356777888888888888877777777666666655
No 123
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=53.41 E-value=1.4e+02 Score=25.53 Aligned_cols=58 Identities=7% Similarity=0.091 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHH
Q 039203 40 DNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMV 97 (125)
Q Consensus 40 eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v 97 (125)
+....+..+..++...+.-......++++++.-++.++...-.+...++...++|...
T Consensus 42 q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~ 99 (420)
T COG4942 42 QIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADL 99 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHH
Confidence 3445566777777777778888888888888888888877777777666666666554
No 124
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=53.25 E-value=88 Score=23.94 Aligned_cols=57 Identities=9% Similarity=0.184 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh
Q 039203 44 AIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK 100 (125)
Q Consensus 44 ~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~ 100 (125)
.+..+...+.....-......|+..-+.-|..+++.++.+..+|..+..++..+-+.
T Consensus 16 ~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~ 72 (237)
T PF00261_consen 16 RLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKR 72 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 445555555555667788889999999999999999999999999999999988664
No 125
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=51.68 E-value=1e+02 Score=23.27 Aligned_cols=48 Identities=19% Similarity=0.184 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHH
Q 039203 44 AIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMV 97 (125)
Q Consensus 44 ~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v 97 (125)
.+..+...+.++.+.+..+.+.++.-.... +...+.+++.+++++..+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~n~~m~~LT~~ 240 (292)
T PF01544_consen 193 YLRDLLDRIERLLERAESLRERLESLQDLY------QSKLSNRQNRVMKVLTIV 240 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 355555555555444444444443322211 223344566666665443
No 126
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=51.03 E-value=99 Score=22.87 Aligned_cols=62 Identities=13% Similarity=0.200 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHhcC
Q 039203 41 NDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKS 102 (125)
Q Consensus 41 qD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~~~ 102 (125)
+.+..+.+.+.+..|+.-...+.++++.....|.+..+.+..-...++.-...+..++...+
T Consensus 101 d~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~ 162 (184)
T PF05791_consen 101 DQKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGEN 162 (184)
T ss_dssp HHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccc
Confidence 44557888889999999999999999999999999999999999999998888888886543
No 127
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=50.94 E-value=69 Score=21.07 Aligned_cols=54 Identities=9% Similarity=0.161 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHhc
Q 039203 47 GLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKK 101 (125)
Q Consensus 47 ~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~~ 101 (125)
.-..+|..++.-+.+- -+|+.|...|++....+-.+..+|..+...|..++...
T Consensus 25 ~q~~rle~~k~~~~de-~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~~ 78 (90)
T PF02970_consen 25 EQEARLEKMKAEGEDE-YDIKKQEEVLEETKMMIPDCQQRLEKAVEDLEEFLEEE 78 (90)
T ss_dssp HHHHHHHHHHHCTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHC
Confidence 3345555555554433 37899999999999999999999999999999998753
No 128
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=50.55 E-value=69 Score=20.94 Aligned_cols=41 Identities=10% Similarity=0.311 Sum_probs=24.9
Q ss_pred HHHHHHHHHH-HHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh
Q 039203 60 GDIHEEVESH-NRLLDRMGNSMDASRGIMSGTMDRFKMVFEK 100 (125)
Q Consensus 60 ~~I~~El~~Q-n~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~ 100 (125)
..+..-|+.. ..+|++++.........|......+..-+.+
T Consensus 49 ~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~ 90 (127)
T smart00502 49 DELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEK 90 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444433 4477777777777777776666666666554
No 129
>PHA02675 ORF104 fusion protein; Provisional
Probab=50.33 E-value=74 Score=21.20 Aligned_cols=49 Identities=18% Similarity=0.218 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHH
Q 039203 47 GLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFK 95 (125)
Q Consensus 47 ~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~ 95 (125)
.|...+.+|-..-..|-+.-+.-+..|+.|+...+.....|-.-.+||.
T Consensus 34 sle~RL~~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~Ml~L~KKID 82 (90)
T PHA02675 34 SVEERLVSLLDSYKTITDCCRETGARLDRLERHLETLREALLKLNTKID 82 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444444444555666666777777888888887776665555555543
No 130
>PHA02967 hypothetical protein; Provisional
Probab=50.28 E-value=15 Score=26.21 Aligned_cols=20 Identities=15% Similarity=0.472 Sum_probs=11.5
Q ss_pred eehHHHHHHHHHHHHHHHhC
Q 039203 106 ICTLVGSFVVSFFVLYYLIR 125 (125)
Q Consensus 106 ~~~lI~~lvviflvly~l~k 125 (125)
.+++++=++++++++||++|
T Consensus 28 ~~Iv~FEi~val~L~~~FFk 47 (128)
T PHA02967 28 FYILVFEVIVALIIINFFFK 47 (128)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 33334434567777777765
No 131
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=50.21 E-value=73 Score=21.13 Aligned_cols=39 Identities=18% Similarity=0.136 Sum_probs=32.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039203 39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMG 77 (125)
Q Consensus 39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~ 77 (125)
+.-....+.+.+.|+..|.-+..-.+|...=|.-||.++
T Consensus 34 ~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~~ 72 (85)
T PRK09973 34 QTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQD 72 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 445567788888888899999999999999999888875
No 132
>PRK09546 zntB zinc transporter; Reviewed
Probab=50.08 E-value=1.3e+02 Score=23.92 Aligned_cols=16 Identities=13% Similarity=0.027 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHhC
Q 039203 110 VGSFVVSFFVLYYLIR 125 (125)
Q Consensus 110 I~~lvviflvly~l~k 125 (125)
+++.+++.+++|+++|
T Consensus 304 l~im~~i~~~~~~~fk 319 (324)
T PRK09546 304 CLLLVVLIGGVAWWLK 319 (324)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444454443
No 133
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=49.74 E-value=1.4e+02 Score=24.18 Aligned_cols=65 Identities=9% Similarity=0.191 Sum_probs=44.1
Q ss_pred chhHHhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhh-------hhhhhHHHHHHHHHH
Q 039203 35 GIDEHDNDKA--------IDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASR-------GIMSGTMDRFKMVFE 99 (125)
Q Consensus 35 ~~le~eqD~~--------Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~-------~~L~~t~~rl~~v~~ 99 (125)
..|.+||++. +-.|.-.+...|..+..+..--++=++.+.+|+++++... ..|+.+.++|.++-+
T Consensus 220 R~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k 299 (330)
T KOG2991|consen 220 RTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKK 299 (330)
T ss_pred HHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 6677888763 5556666666677666666555555677888888887654 567777777776643
No 134
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=49.41 E-value=15 Score=30.51 Aligned_cols=17 Identities=18% Similarity=0.507 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHhC
Q 039203 109 LVGSFVVSFFVLYYLIR 125 (125)
Q Consensus 109 lI~~lvviflvly~l~k 125 (125)
.|+++|++++++|+++|
T Consensus 318 AIvvIVLIMvIIYLILR 334 (353)
T TIGR01477 318 AILIIVLIMVIIYLILR 334 (353)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35566667788888764
No 135
>PF12495 Vip3A_N: Vegetative insecticide protein 3A N terminal ; InterPro: IPR022180 This family of proteins is found in bacteria. Proteins in this family are typically between 170 and 789 amino acids in length. The family is found in association with PF02018 from PFAM. Vip3A represents a novel class of proteins insecticidal to lepidopteran insect larvae.
Probab=49.12 E-value=51 Score=23.77 Aligned_cols=42 Identities=12% Similarity=0.377 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHH
Q 039203 57 RLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVF 98 (125)
Q Consensus 57 ~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~ 98 (125)
.++..|-.=..+||.+|++++...+.....|+.-.-++..++
T Consensus 73 el~ke~lkianeqn~~ln~vn~~l~~in~~l~~ylpkitsml 114 (177)
T PF12495_consen 73 ELSKEILKIANEQNQMLNNVNNQLNSINSMLNTYLPKITSML 114 (177)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 456666666789999999999999998888776666655554
No 136
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=48.98 E-value=11 Score=27.95 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=13.9
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039203 35 GIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLD 74 (125)
Q Consensus 35 ~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD 74 (125)
-.||.|.|+ =+.|...+++||.=+.+++.|+.-|.++-+
T Consensus 17 alLE~ELdE-KE~L~~~~QRLkDE~RDLKqEl~V~ek~~~ 55 (166)
T PF04880_consen 17 ALLESELDE-KENLREEVQRLKDELRDLKQELIVQEKLRK 55 (166)
T ss_dssp HHHHHHHHH-HHHHHHCH----------------------
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 357888876 788999999999999999999977776553
No 137
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=48.56 E-value=1.2e+02 Score=27.61 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 039203 55 LKRLTGDIHEEVESH 69 (125)
Q Consensus 55 LK~ia~~I~~El~~Q 69 (125)
+|..-..+++++.++
T Consensus 362 ik~~l~~~~~~i~~~ 376 (806)
T PF05478_consen 362 IKRDLDSIGKQIRSQ 376 (806)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 138
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=48.43 E-value=17 Score=29.35 Aligned_cols=13 Identities=23% Similarity=0.562 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHh
Q 039203 112 SFVVSFFVLYYLI 124 (125)
Q Consensus 112 ~lvviflvly~l~ 124 (125)
+++|++++||+|+
T Consensus 270 il~vvliiLYiWl 282 (295)
T TIGR01478 270 ILTVVLIILYIWL 282 (295)
T ss_pred HHHHHHHHHHHHH
Confidence 3355667777664
No 139
>COG4420 Predicted membrane protein [Function unknown]
Probab=48.39 E-value=66 Score=24.51 Aligned_cols=39 Identities=5% Similarity=0.066 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHH
Q 039203 60 GDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVF 98 (125)
Q Consensus 60 ~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~ 98 (125)
..+.+.+........+....+..-..--.++..++.++.
T Consensus 17 ~~~~~~l~~~~~i~~~~~e~~~~~~t~gdR~ad~ia~f~ 55 (191)
T COG4420 17 ARLFELLRENTPISSDRREEFEDGETFGDRVADKIARFG 55 (191)
T ss_pred HHHhHHHHhcchhhcchHHHHhcccchhhhHHHHHHHHc
Confidence 334444444454555555555555555556666777764
No 140
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=48.38 E-value=8 Score=26.00 Aligned_cols=8 Identities=13% Similarity=0.820 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 039203 116 SFFVLYYL 123 (125)
Q Consensus 116 iflvly~l 123 (125)
.|+++||+
T Consensus 84 ~~l~w~f~ 91 (96)
T PTZ00382 84 GFLCWWFV 91 (96)
T ss_pred HHHhheeE
Confidence 34444444
No 141
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=48.29 E-value=1.3e+02 Score=24.86 Aligned_cols=33 Identities=9% Similarity=0.339 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHH
Q 039203 60 GDIHEEVESHNRLLDRMGNSMDASRGIMSGTMD 92 (125)
Q Consensus 60 ~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~ 92 (125)
..|..+++..+..|+.++..|......+....+
T Consensus 346 ~~l~~~l~~~~~~L~~ve~~~~~N~~~i~~n~~ 378 (388)
T PF04912_consen 346 SDLQSQLKKWEELLNKVEEKFKENMETIEKNVK 378 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333333333
No 142
>PTZ00370 STEVOR; Provisional
Probab=48.19 E-value=18 Score=29.35 Aligned_cols=13 Identities=23% Similarity=0.565 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHh
Q 039203 112 SFVVSFFVLYYLI 124 (125)
Q Consensus 112 ~lvviflvly~l~ 124 (125)
+++|++++||+|+
T Consensus 266 il~vvliilYiwl 278 (296)
T PTZ00370 266 ILAVVLIILYIWL 278 (296)
T ss_pred HHHHHHHHHHHHH
Confidence 3355667777664
No 143
>PTZ00046 rifin; Provisional
Probab=47.55 E-value=17 Score=30.30 Aligned_cols=17 Identities=18% Similarity=0.544 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHhC
Q 039203 109 LVGSFVVSFFVLYYLIR 125 (125)
Q Consensus 109 lI~~lvviflvly~l~k 125 (125)
.|+++|++.+++|+++|
T Consensus 323 AIvVIVLIMvIIYLILR 339 (358)
T PTZ00046 323 AIVVIVLIMVIIYLILR 339 (358)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35566667788888764
No 144
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.38 E-value=1.3e+02 Score=23.24 Aligned_cols=70 Identities=16% Similarity=0.111 Sum_probs=39.3
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHhcCCcceehHHHHHH
Q 039203 35 GIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLVGSFV 114 (125)
Q Consensus 35 ~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~~~~~~~~~lI~~lv 114 (125)
..+..+-.+..+.|+.+|..|.+--..|..|=+.|- +=+. ++....+++.++-+||.|+=++
T Consensus 131 a~l~a~~ke~~k~l~~Rv~~L~~~~~~IrkEQ~~~R----~RE~--------------~FR~tSES~NsRvm~Wsv~Q~v 192 (215)
T KOG1690|consen 131 ANLDAQIKETDKLLEGRVRQLNSRLESIRKEQNLQR----EREE--------------TFRDTSESANSRVMWWSVAQLV 192 (215)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHH--------------HHHhhhhhhcceeeehhHHHHH
Confidence 445556666677778877777666556655533332 2222 2333344556677777666665
Q ss_pred HHHHHHHH
Q 039203 115 VSFFVLYY 122 (125)
Q Consensus 115 viflvly~ 122 (125)
++++.+.|
T Consensus 193 vL~~tc~w 200 (215)
T KOG1690|consen 193 VLLVTCIW 200 (215)
T ss_pred HHHHHHHH
Confidence 55554443
No 145
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=47.29 E-value=13 Score=27.09 Aligned_cols=20 Identities=10% Similarity=0.250 Sum_probs=13.3
Q ss_pred eehHHHHHHHHHHHHHHHhC
Q 039203 106 ICTLVGSFVVSFFVLYYLIR 125 (125)
Q Consensus 106 ~~~lI~~lvviflvly~l~k 125 (125)
.|.+|-|+|+++++.+|++|
T Consensus 26 ~~~~inflil~~lL~~fl~k 45 (167)
T PRK08475 26 IERTINFLIFVGILWYFAAK 45 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34467777777777777654
No 146
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=47.09 E-value=1e+02 Score=21.97 Aligned_cols=57 Identities=16% Similarity=0.219 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh
Q 039203 44 AIDGLKERAVFLKRLTGDIHE---EVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK 100 (125)
Q Consensus 44 ~Ld~L~~~V~~LK~ia~~I~~---El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~ 100 (125)
.+|.+...++..+.....-.. .++.=++-+.-|+..++.+..+|..++.++..+-.+
T Consensus 50 eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ 109 (143)
T PF12718_consen 50 ELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVK 109 (143)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443333322 233345556666666666777777777666666433
No 147
>PHA02689 ORF051 putative membrane protein; Provisional
Probab=46.99 E-value=16 Score=26.10 Aligned_cols=20 Identities=5% Similarity=0.160 Sum_probs=11.7
Q ss_pred eehHHHH-HHHHHHHHHHHhC
Q 039203 106 ICTLVGS-FVVSFFVLYYLIR 125 (125)
Q Consensus 106 ~~~lI~~-lvviflvly~l~k 125 (125)
..|+|+| ++++++++|+++|
T Consensus 30 Y~~Iv~FEi~va~~L~~~FFk 50 (128)
T PHA02689 30 YLAIAVLELLLALALALVFFR 50 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 4557777777764
No 148
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=46.06 E-value=54 Score=26.63 Aligned_cols=76 Identities=17% Similarity=0.201 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHhcCCcceehHHHHHHHHHHHHH
Q 039203 46 DGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLVGSFVVSFFVLY 121 (125)
Q Consensus 46 d~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~~~~~~~~~lI~~lvviflvly 121 (125)
+.|...+..|-.+...|+--+..=..+++-=+.+.+....+|......+.++-++=...-+...||+++-=|+-+|
T Consensus 164 ~~lek~lgKl~~l~~k~~pm~sq~~sm~g~~~~~~~~l~~kle~~~~~i~~vn~qFkdpd~TtFVcVcI~eflsly 239 (323)
T KOG2825|consen 164 TTLEKGLGKLLSLKNKIGPMLSQMGSMFGMEDAGADDLAGKLEELLEVIEKVNEQFKDPDCTTFVCVCIAEFLSLY 239 (323)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEHHHHHhHH
Confidence 3455556666666666666665545566544555667777888888888888766332222223344444444444
No 149
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=45.91 E-value=23 Score=23.40 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=18.8
Q ss_pred HHHHHHHhc--CCcceehHHHHHHHHHHHHHHHh
Q 039203 93 RFKMVFEKK--SNRRICTLVGSFVVSFFVLYYLI 124 (125)
Q Consensus 93 rl~~v~~~~--~~~~~~~lI~~lvviflvly~l~ 124 (125)
+++...+.= ..+..+.+++|+++..+.+|+++
T Consensus 14 ~Lr~~c~~Lsp~~R~~vvl~ml~~fa~l~ly~~~ 47 (85)
T PF13150_consen 14 RLRRYCGRLSPKQRLRVVLVMLVLFAALCLYMTV 47 (85)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444431 23345556677777778888775
No 150
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=45.89 E-value=17 Score=26.50 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHhC
Q 039203 108 TLVGSFVVSFFVLYYLIR 125 (125)
Q Consensus 108 ~lI~~lvviflvly~l~k 125 (125)
-+|-|+|+++++.||++|
T Consensus 25 ~iinflIl~~lL~~fl~k 42 (174)
T PRK07352 25 NLINLAIVIGLLYYFGRG 42 (174)
T ss_pred HHHHHHHHHHHHHHHhHH
Confidence 356666666666666654
No 151
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=45.41 E-value=76 Score=23.06 Aligned_cols=30 Identities=10% Similarity=0.238 Sum_probs=20.7
Q ss_pred HHHHhhhHHHhhhhhhhhHHHHHHHHHHhc
Q 039203 72 LLDRMGNSMDASRGIMSGTMDRFKMVFEKK 101 (125)
Q Consensus 72 lLD~l~~~~d~t~~~L~~t~~rl~~v~~~~ 101 (125)
-++++...+.+-.-.+..+.++++++.+..
T Consensus 69 ~v~~l~~~~~~~~~~~~ea~~~L~~I~~~~ 98 (193)
T PF06738_consen 69 AVNRLSRRIVAGQLSLEEAIERLDEIDREP 98 (193)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhhCC
Confidence 355556666666667777888888887654
No 152
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=44.11 E-value=1.6e+02 Score=23.43 Aligned_cols=11 Identities=9% Similarity=0.021 Sum_probs=4.5
Q ss_pred hhhhhHHHHHH
Q 039203 85 GIMSGTMDRFK 95 (125)
Q Consensus 85 ~~L~~t~~rl~ 95 (125)
++++..+|.+.
T Consensus 256 ~~~N~imk~LT 266 (322)
T COG0598 256 NNQNEIMKILT 266 (322)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 153
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=43.93 E-value=20 Score=26.60 Aligned_cols=16 Identities=31% Similarity=0.519 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHhC
Q 039203 110 VGSFVVSFFVLYYLIR 125 (125)
Q Consensus 110 I~~lvviflvly~l~k 125 (125)
|++++.+++++||++|
T Consensus 100 Vl~g~s~l~i~yfvir 115 (163)
T PF06679_consen 100 VLVGLSALAILYFVIR 115 (163)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344445566666654
No 154
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=43.79 E-value=1.4e+02 Score=24.32 Aligned_cols=35 Identities=11% Similarity=0.331 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhh
Q 039203 55 LKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSG 89 (125)
Q Consensus 55 LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~ 89 (125)
|+...-..++.+..|++.|+++...+++....+.+
T Consensus 72 l~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~ 106 (301)
T PF06120_consen 72 LRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKN 106 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667788888888888888888877776654
No 155
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=43.53 E-value=11 Score=23.15 Aligned_cols=14 Identities=21% Similarity=0.377 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHh
Q 039203 111 GSFVVSFFVLYYLI 124 (125)
Q Consensus 111 ~~lvviflvly~l~ 124 (125)
+.++++|+++|+.+
T Consensus 38 l~~~~~~Ivv~vy~ 51 (56)
T PF15012_consen 38 LAAVFLFIVVFVYL 51 (56)
T ss_pred HHHHHHHHhheeEE
Confidence 44444555555443
No 156
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=42.77 E-value=1.4e+02 Score=22.11 Aligned_cols=51 Identities=10% Similarity=0.132 Sum_probs=29.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhh
Q 039203 38 EHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMS 88 (125)
Q Consensus 38 e~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~ 88 (125)
..+..+.-+.|..-++.|+.-+..+..-+..++.-|++|...+++....++
T Consensus 130 i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I~ 180 (184)
T PF05791_consen 130 INELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEEIK 180 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG-
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 344455555566666666666666666666666666666666666655554
No 157
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=42.68 E-value=1.1e+02 Score=21.01 Aligned_cols=55 Identities=11% Similarity=0.207 Sum_probs=29.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhHHHhhhhhhhhHHHHH
Q 039203 39 HDNDKAIDGLKERAVFLKRLTGDIH---EEVESHNRLLDRMGNSMDASRGIMSGTMDRF 94 (125)
Q Consensus 39 ~eqD~~Ld~L~~~V~~LK~ia~~I~---~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl 94 (125)
+-+++.|..+..++..| ..+..|+ +.++.|.+-+.++...+......|..-.+.|
T Consensus 33 d~~~q~L~kiE~~~~~l-~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L 90 (102)
T PF01519_consen 33 DSNNQRLTKIENKLDQL-AQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTL 90 (102)
T ss_dssp --HTTB-BHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666677777777755 3344444 5566666666666665554444444333333
No 158
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=42.62 E-value=20 Score=27.12 Aligned_cols=17 Identities=6% Similarity=0.321 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHhC
Q 039203 109 LVGSFVVSFFVLYYLIR 125 (125)
Q Consensus 109 lI~~lvviflvly~l~k 125 (125)
+|.|++++|++.||++|
T Consensus 55 lInFlIlv~lL~k~l~k 71 (205)
T PRK06231 55 LIAFSILLLLGIFLFWK 71 (205)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566777777676654
No 159
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=42.60 E-value=8.2 Score=27.13 Aligned_cols=9 Identities=11% Similarity=-0.082 Sum_probs=0.0
Q ss_pred CcceehHHH
Q 039203 103 NRRICTLVG 111 (125)
Q Consensus 103 ~~~~~~lI~ 111 (125)
.+-++|.++
T Consensus 154 ~~i~~~si~ 162 (183)
T PF01105_consen 154 SRIMWWSII 162 (183)
T ss_dssp ---------
T ss_pred heEEhHHHH
Confidence 343444333
No 160
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.58 E-value=1.8e+02 Score=23.32 Aligned_cols=37 Identities=8% Similarity=0.187 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHH
Q 039203 55 LKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTM 91 (125)
Q Consensus 55 LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~ 91 (125)
|-+-...|..++++..+=+|.+...+......+..+.
T Consensus 57 L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~ 93 (265)
T COG3883 57 LDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELK 93 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444443333333
No 161
>PF07097 DUF1359: Protein of unknown function (DUF1359); InterPro: IPR010772 This family consists of several hypothetical bacterial and phage proteins of around 100 residues in length. Members of this family seem to be found exclusively in Lactococcus lactis and the bacteriophages that infect this species. The function of this family is unknown.
Probab=42.54 E-value=90 Score=21.02 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 039203 42 DKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNS 79 (125)
Q Consensus 42 D~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~ 79 (125)
-+++..+..++.+||++--+|.+..+.-.-++|++.++
T Consensus 8 ~~~I~~~q~K~~RLk~~IH~vr~Q~~~~~i~~D~~k~~ 45 (102)
T PF07097_consen 8 SEQIAKIQTKICRLKNVIHAVRRQTELVKIVLDDLKNN 45 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcC
Confidence 45788889999999999888777666556677777654
No 162
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=42.52 E-value=8.2 Score=24.34 Aligned_cols=7 Identities=14% Similarity=0.686 Sum_probs=0.0
Q ss_pred HHHHHHH
Q 039203 116 SFFVLYY 122 (125)
Q Consensus 116 iflvly~ 122 (125)
+++++++
T Consensus 26 ilLIlf~ 32 (64)
T PF01034_consen 26 ILLILFL 32 (64)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 3333333
No 163
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=42.42 E-value=18 Score=27.40 Aligned_cols=19 Identities=5% Similarity=0.081 Sum_probs=12.0
Q ss_pred eehHHHHHHHHHHHHHHHh
Q 039203 106 ICTLVGSFVVSFFVLYYLI 124 (125)
Q Consensus 106 ~~~lI~~lvviflvly~l~ 124 (125)
+|.+|.|++++||+-.|++
T Consensus 57 ~w~~I~FliL~~lL~k~~~ 75 (204)
T PRK09174 57 LWLAITFGLFYLFMSRVIL 75 (204)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456677777776656655
No 164
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=42.17 E-value=26 Score=23.85 Aligned_cols=49 Identities=20% Similarity=0.336 Sum_probs=25.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhh
Q 039203 39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIM 87 (125)
Q Consensus 39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L 87 (125)
.|-|.+|+.|...+..|..--.....++..-+.-|..+...-+.....|
T Consensus 21 ~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 21 DEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 5778899999999988886666666666655555555544444444433
No 165
>PRK02793 phi X174 lysis protein; Provisional
Probab=41.33 E-value=91 Score=19.69 Aligned_cols=38 Identities=8% Similarity=0.212 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHH
Q 039203 61 DIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVF 98 (125)
Q Consensus 61 ~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~ 98 (125)
++..-+.-|.+.+++|++.+..-...+..-.+.++.+.
T Consensus 12 ~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~ 49 (72)
T PRK02793 12 ELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLT 49 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666777777777777777755555555555553
No 166
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=41.28 E-value=24 Score=23.96 Aligned_cols=20 Identities=10% Similarity=-0.149 Sum_probs=11.5
Q ss_pred eehHHHHHHHHHHHHHHHhC
Q 039203 106 ICTLVGSFVVSFFVLYYLIR 125 (125)
Q Consensus 106 ~~~lI~~lvviflvly~l~k 125 (125)
.||+.++++++++.+++.+|
T Consensus 62 ~~f~~~~~~~v~~~~~~~y~ 81 (105)
T PF10183_consen 62 PFFFGFSGSLVFGGVFLAYK 81 (105)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 55655555556666666554
No 167
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=41.27 E-value=1.4e+02 Score=22.79 Aligned_cols=65 Identities=3% Similarity=0.133 Sum_probs=51.6
Q ss_pred hhHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh
Q 039203 36 IDEHDNDKAIDGLKERA-VFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK 100 (125)
Q Consensus 36 ~le~eqD~~Ld~L~~~V-~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~ 100 (125)
-+-..-++.|+.....- ..+...-..+.++++.-++-+++++..++....++.....+|..++.+
T Consensus 171 Gi~~~l~~~l~~~~~~~~G~i~~~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l~~qf~~me~~i~~ 236 (239)
T PF07195_consen 171 GIATRLNDYLDSYTGSSTGSITSRIDSLNSQIKSLDKQIEDLEERLESKEERLRKQFSAMESLISQ 236 (239)
T ss_pred cHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666 777888888899999999999999999999999999888888887754
No 168
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=41.21 E-value=1.3e+02 Score=23.25 Aligned_cols=23 Identities=30% Similarity=0.366 Sum_probs=14.3
Q ss_pred CCcceehHHHHHHHHHHHHHHHh
Q 039203 102 SNRRICTLVGSFVVSFFVLYYLI 124 (125)
Q Consensus 102 ~~~~~~~lI~~lvviflvly~l~ 124 (125)
+.++.|.+.++=|++|+++.+++
T Consensus 151 STwgT~~lmgvNvllFl~~~~~~ 173 (207)
T PF05546_consen 151 STWGTWGLMGVNVLLFLVAQLLV 173 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555577777776654
No 169
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=40.94 E-value=29 Score=26.97 Aligned_cols=9 Identities=11% Similarity=0.338 Sum_probs=3.9
Q ss_pred ceehHHHHH
Q 039203 105 RICTLVGSF 113 (125)
Q Consensus 105 ~~~~lI~~l 113 (125)
++-++|||+
T Consensus 127 K~amLIClI 135 (227)
T PF05399_consen 127 KMAMLICLI 135 (227)
T ss_pred chhHHHHHH
Confidence 344444444
No 170
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=40.93 E-value=28 Score=20.16 Aligned_cols=15 Identities=7% Similarity=-0.042 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 039203 109 LVGSFVVSFFVLYYL 123 (125)
Q Consensus 109 lI~~lvviflvly~l 123 (125)
++++++++.+++|..
T Consensus 16 v~~~~~F~gi~~w~~ 30 (49)
T PF05545_consen 16 VLFFVFFIGIVIWAY 30 (49)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444454444443
No 171
>PHA03164 hypothetical protein; Provisional
Probab=40.76 E-value=24 Score=23.14 Aligned_cols=9 Identities=44% Similarity=0.822 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 039203 114 VVSFFVLYY 122 (125)
Q Consensus 114 vviflvly~ 122 (125)
+++.|++|+
T Consensus 72 Lfiifvlyv 80 (88)
T PHA03164 72 LFIIFVLYV 80 (88)
T ss_pred HHHHHHHHh
Confidence 334444554
No 172
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=40.51 E-value=1.9e+02 Score=23.11 Aligned_cols=55 Identities=11% Similarity=0.146 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh
Q 039203 46 DGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK 100 (125)
Q Consensus 46 d~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~ 100 (125)
+++.-.|++|++...++.-.+.+|...--+|.-..|.+...=..-..++..+.++
T Consensus 12 ed~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk 66 (277)
T PF15030_consen 12 EDLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKK 66 (277)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999998899988888776666666677777655
No 173
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=40.42 E-value=1.2e+02 Score=25.24 Aligned_cols=56 Identities=18% Similarity=0.236 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhh--hhhhHHHHHHHHHHh
Q 039203 45 IDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRG--IMSGTMDRFKMVFEK 100 (125)
Q Consensus 45 Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~--~L~~t~~rl~~v~~~ 100 (125)
....+++|..+.+.=..|.+|++....-+++=+..|+.+.- +++.+..+|+.=+++
T Consensus 289 y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~q 346 (359)
T PF10498_consen 289 YKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQ 346 (359)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445666666666666666666666654 666666666554443
No 174
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=39.69 E-value=42 Score=26.38 Aligned_cols=18 Identities=39% Similarity=0.840 Sum_probs=12.7
Q ss_pred eehHHHHHHHHHHHHHHH
Q 039203 106 ICTLVGSFVVSFFVLYYL 123 (125)
Q Consensus 106 ~~~lI~~lvviflvly~l 123 (125)
++|+|++=++||+++|++
T Consensus 223 ~~Y~l~LH~lvf~~l~~~ 240 (248)
T PF08172_consen 223 FFYCLGLHLLVFFVLYYM 240 (248)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455566668888888874
No 175
>PF05263 DUF722: Protein of unknown function (DUF722); InterPro: IPR007927 This entry is represented by Bacteriophage bIL285, Orf38. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=39.19 E-value=1.3e+02 Score=21.38 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=18.2
Q ss_pred CCCCCCCCCCc---chhHH---hHHHHHHHHHHHHHHHH
Q 039203 24 GGLKASSSYSS---GIDEH---DNDKAIDGLKERAVFLK 56 (125)
Q Consensus 24 ~~~~~~~~~~~---~~le~---eqD~~Ld~L~~~V~~LK 56 (125)
||.+|..-.+. ..+.. |+|+.|..|......+.
T Consensus 38 GGgra~n~~s~p~e~~li~e~~e~D~~L~~L~~~k~~id 76 (130)
T PF05263_consen 38 GGGRAQNKSSRPEENVLIKERLESDEELQSLKRQKEAID 76 (130)
T ss_pred ccccccCCCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 55565432322 33444 88888877765544433
No 176
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=38.97 E-value=50 Score=21.97 Aligned_cols=17 Identities=35% Similarity=0.565 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHh
Q 039203 108 TLVGSFVVSFFVLYYLI 124 (125)
Q Consensus 108 ~lI~~lvviflvly~l~ 124 (125)
++++.+++++|++|++-
T Consensus 66 ~~vVGvvLlv~viwLl~ 82 (87)
T PF11190_consen 66 TVVVGVVLLVFVIWLLT 82 (87)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555666777777653
No 177
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=38.82 E-value=1.3e+02 Score=21.69 Aligned_cols=25 Identities=12% Similarity=0.147 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039203 45 IDGLKERAVFLKRLTGDIHEEVESH 69 (125)
Q Consensus 45 Ld~L~~~V~~LK~ia~~I~~El~~Q 69 (125)
.++..+.|...|.--....++++..
T Consensus 48 ~de~~k~I~k~kk~Ek~~~~~~k~~ 72 (145)
T PF10661_consen 48 TDETEKKIKKKKKAEKEKYEKIKNS 72 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666555555555555443
No 178
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=38.51 E-value=11 Score=26.65 Aligned_cols=11 Identities=45% Similarity=0.821 Sum_probs=5.5
Q ss_pred HHHHHHHHHHH
Q 039203 111 GSFVVSFFVLY 121 (125)
Q Consensus 111 ~~lvviflvly 121 (125)
++++|+|||+|
T Consensus 70 iillviffviy 80 (150)
T PF06084_consen 70 IILLVIFFVIY 80 (150)
T ss_pred HHHHHHhheeE
Confidence 33444555555
No 179
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=38.43 E-value=27 Score=26.40 Aligned_cols=16 Identities=6% Similarity=0.310 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHhC
Q 039203 110 VGSFVVSFFVLYYLIR 125 (125)
Q Consensus 110 I~~lvviflvly~l~k 125 (125)
|++.+.++-|+||+||
T Consensus 167 IVL~LGv~aI~ff~~K 182 (186)
T PF05283_consen 167 IVLTLGVLAIIFFLYK 182 (186)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3333444555555554
No 180
>PHA02955 hypothetical protein; Provisional
Probab=38.40 E-value=31 Score=26.71 Aligned_cols=12 Identities=17% Similarity=0.473 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHh
Q 039203 113 FVVSFFVLYYLI 124 (125)
Q Consensus 113 lvviflvly~l~ 124 (125)
++++|+++|++.
T Consensus 189 ii~~~v~l~yik 200 (213)
T PHA02955 189 CLLILIILGYIY 200 (213)
T ss_pred HHHHHHHHHHHH
Confidence 344555556553
No 181
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=38.19 E-value=24 Score=25.27 Aligned_cols=19 Identities=5% Similarity=0.079 Sum_probs=11.1
Q ss_pred ehHHHHHHHHHHHHHHHhC
Q 039203 107 CTLVGSFVVSFFVLYYLIR 125 (125)
Q Consensus 107 ~~lI~~lvviflvly~l~k 125 (125)
|.++.|++++|++-+|+++
T Consensus 27 ~~~inFliL~~lL~k~l~~ 45 (156)
T CHL00118 27 LMALQFLLLMVLLNIILYK 45 (156)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456666666666566553
No 182
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=38.10 E-value=26 Score=28.66 Aligned_cols=18 Identities=22% Similarity=0.264 Sum_probs=9.3
Q ss_pred eehHHHHHHHHHHHHHHH
Q 039203 106 ICTLVGSFVVSFFVLYYL 123 (125)
Q Consensus 106 ~~~lI~~lvviflvly~l 123 (125)
++++|+|++|+++|+|-+
T Consensus 158 ~lf~ii~l~vla~ivY~~ 175 (318)
T PF06682_consen 158 WLFWIIFLLVLAFIVYSL 175 (318)
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 444455555555555544
No 183
>PRK10856 cytoskeletal protein RodZ; Provisional
Probab=37.85 E-value=24 Score=28.77 Aligned_cols=17 Identities=18% Similarity=0.120 Sum_probs=9.0
Q ss_pred ehHHHHHHHHHHHHHHH
Q 039203 107 CTLVGSFVVSFFVLYYL 123 (125)
Q Consensus 107 ~~lI~~lvviflvly~l 123 (125)
.|+|+++++.++++||+
T Consensus 117 ~~lv~~vvl~l~~~www 133 (331)
T PRK10856 117 TWLVLFVVIGLTGAWWW 133 (331)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34445555555556665
No 184
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=37.57 E-value=1.2e+02 Score=19.84 Aligned_cols=41 Identities=15% Similarity=-0.019 Sum_probs=25.6
Q ss_pred HHHhhhHHHhhhhhhhhHHHHHHHHHHhcCCc--ceehHHHHH
Q 039203 73 LDRMGNSMDASRGIMSGTMDRFKMVFEKKSNR--RICTLVGSF 113 (125)
Q Consensus 73 LD~l~~~~d~t~~~L~~t~~rl~~v~~~~~~~--~~~~lI~~l 113 (125)
..++....|....++..+...+.+-..++-+| +.+|-+++.
T Consensus 17 ~~~i~~rLD~iEeKVEftn~Ei~Qr~GkkvGRDiGIlYG~viG 59 (77)
T PRK01026 17 FKEIQKRLDEIEEKVEFTNAEIFQRIGKKVGRDIGILYGLVIG 59 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHH
Confidence 34555666777888888888777776665444 355533333
No 185
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=37.32 E-value=1.9e+02 Score=22.12 Aligned_cols=60 Identities=13% Similarity=0.211 Sum_probs=44.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHH
Q 039203 39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVF 98 (125)
Q Consensus 39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~ 98 (125)
...|+.++.|...+...+..+.....-.++-..-|.-+....+.+..++..+-.++..+-
T Consensus 88 ~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE 147 (237)
T PF00261_consen 88 QSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELE 147 (237)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH
Confidence 556778888888888888888877777777777777777777777777776666666653
No 186
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.21 E-value=1.8e+02 Score=27.27 Aligned_cols=64 Identities=14% Similarity=0.135 Sum_probs=51.3
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHH
Q 039203 36 IDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFE 99 (125)
Q Consensus 36 ~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~ 99 (125)
-+..++|-.+..+++...+|+.--.....|+.+++.....+.+.++.....|+....+...+..
T Consensus 664 ~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q 727 (970)
T KOG0946|consen 664 GLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQ 727 (970)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHh
Confidence 3457888889999999999988888888899888888888888888888888866655555544
No 187
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=37.08 E-value=1.9e+02 Score=22.16 Aligned_cols=40 Identities=13% Similarity=0.199 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhh
Q 039203 45 IDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASR 84 (125)
Q Consensus 45 Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~ 84 (125)
+..|...+..|+..-..+...++.|+.-+++++...+...
T Consensus 58 ~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 58 YRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555555555555555555555544443
No 188
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=36.78 E-value=1.7e+02 Score=22.77 Aligned_cols=11 Identities=9% Similarity=0.389 Sum_probs=4.7
Q ss_pred HHHhhhHHHhh
Q 039203 73 LDRMGNSMDAS 83 (125)
Q Consensus 73 LD~l~~~~d~t 83 (125)
|+.++.++...
T Consensus 176 l~~le~~l~~l 186 (232)
T PF09577_consen 176 LEQLEEDLQKL 186 (232)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 189
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=36.57 E-value=1.1e+02 Score=19.25 Aligned_cols=29 Identities=24% Similarity=0.349 Sum_probs=17.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039203 39 HDNDKAIDGLKERAVFLKRLTGDIHEEVE 67 (125)
Q Consensus 39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~ 67 (125)
++-...++.+...|..|+.+-..+-....
T Consensus 10 ~~i~~~i~~i~~~~~~l~~l~~~~l~~~~ 38 (103)
T PF00804_consen 10 QEIREDIDKIKEKLNELRKLHKKILSSPD 38 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34455677777777777666555544443
No 190
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=36.47 E-value=42 Score=20.82 Aligned_cols=15 Identities=13% Similarity=0.303 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHh
Q 039203 110 VGSFVVSFFVLYYLI 124 (125)
Q Consensus 110 I~~lvviflvly~l~ 124 (125)
+++.++.+.++|+.+
T Consensus 16 ~~~~l~fiavi~~ay 30 (60)
T COG4736 16 IAFTLFFIAVIYFAY 30 (60)
T ss_pred HHHHHHHHHHHHHHh
Confidence 333333333444443
No 191
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=36.33 E-value=2.3e+02 Score=22.90 Aligned_cols=10 Identities=10% Similarity=0.112 Sum_probs=3.9
Q ss_pred hhhhHHHHHH
Q 039203 86 IMSGTMDRFK 95 (125)
Q Consensus 86 ~L~~t~~rl~ 95 (125)
+++.++|.+.
T Consensus 251 ~~N~~mk~lT 260 (316)
T PRK11085 251 EQNRIIKIFS 260 (316)
T ss_pred HHHHHHHHHH
Confidence 3334444433
No 192
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=36.26 E-value=1.5e+02 Score=22.81 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 039203 40 DNDKAIDGLKERAVFLKR 57 (125)
Q Consensus 40 eqD~~Ld~L~~~V~~LK~ 57 (125)
+.+.+|..+.....+|..
T Consensus 136 D~~arl~~l~~~~~rl~~ 153 (262)
T PF14257_consen 136 DLEARLKNLEAEEERLLE 153 (262)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555555543
No 193
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=36.17 E-value=97 Score=18.51 Aligned_cols=32 Identities=13% Similarity=0.295 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039203 46 DGLKERAVFLKRLTGDIHEEVESHNRLLDRMG 77 (125)
Q Consensus 46 d~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~ 77 (125)
+.|...+..+...+..|.+.+..-+..++.|.
T Consensus 7 ~~l~~~a~~~~~~~~~l~~~~~~l~~~~~~l~ 38 (86)
T PF06013_consen 7 EQLRAAAQQLQAQADELQSQLQQLESSIDSLQ 38 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666667777777777777776666666663
No 194
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=36.16 E-value=2.1e+02 Score=22.41 Aligned_cols=16 Identities=0% Similarity=-0.022 Sum_probs=7.3
Q ss_pred hhhhhHHHHHHHHHHh
Q 039203 85 GIMSGTMDRFKMVFEK 100 (125)
Q Consensus 85 ~~L~~t~~rl~~v~~~ 100 (125)
..+-.=..-+.++.+.
T Consensus 242 ~G~l~R~~Al~~L~~~ 257 (301)
T PF14362_consen 242 DGFLARLEALWELTKE 257 (301)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 3333334455555543
No 195
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=36.14 E-value=88 Score=29.00 Aligned_cols=48 Identities=8% Similarity=0.174 Sum_probs=28.6
Q ss_pred chhHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHh
Q 039203 35 GIDEHDNDKAIDGLKERAVFL-KRLTGDIHEEVESHNRLLDRMGNSMDA 82 (125)
Q Consensus 35 ~~le~eqD~~Ld~L~~~V~~L-K~ia~~I~~El~~Qn~lLD~l~~~~d~ 82 (125)
.++-++....++.|..+|+.. -.+...+...+.++-.-+|.+.+.+..
T Consensus 349 ~~~~q~~~s~~n~l~~kvq~q~s~vv~~~~r~l~q~~~~l~~~a~~l~~ 397 (865)
T KOG4331|consen 349 LQSVQRGNSLFNVLPDKVQYQTSGVVDDVMRDLPQIPGDLDGLAEKLPS 397 (865)
T ss_pred HHHHHhhhhhhhhhhHHHhhcccccchHHHHHHHhCCchHHHHHhhccH
Confidence 455577788899999998653 233444444444454455555555444
No 196
>PHA03072 putative viral membrane protein; Provisional
Probab=35.87 E-value=47 Score=25.11 Aligned_cols=37 Identities=8% Similarity=0.181 Sum_probs=20.7
Q ss_pred hhhhHHHHHHHHHHhcCCcceehHHHHHHHHHHHHHH
Q 039203 86 IMSGTMDRFKMVFEKKSNRRICTLVGSFVVSFFVLYY 122 (125)
Q Consensus 86 ~L~~t~~rl~~v~~~~~~~~~~~lI~~lvviflvly~ 122 (125)
.|.-+..+..+..+-++....|..++++++..+++|+
T Consensus 12 eL~Y~Re~~~k~i~~a~~sTl~ff~l~L~iS~llf~~ 48 (190)
T PHA03072 12 ELEYAREKATKSIRAAKTSTLIFFVIILAISVLLLWF 48 (190)
T ss_pred ehHhHHhhHhhhhhhhhhhhHHHHHHHHHHHHHHHhh
Confidence 3455666666666655555566655555554444443
No 197
>PRK01919 tatB sec-independent translocase; Provisional
Probab=35.84 E-value=1.9e+02 Score=21.66 Aligned_cols=29 Identities=14% Similarity=0.066 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039203 43 KAIDGLKERAVFLKRLTGDIHEEVESHNR 71 (125)
Q Consensus 43 ~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~ 71 (125)
+..-.+...+..+|..+.++.+|++.+-+
T Consensus 27 ~~aRtlGk~i~k~Rr~~~d~K~ev~~E~e 55 (169)
T PRK01919 27 RVARTAGALFGRAQRYINDVKAEVSREIE 55 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566777788888888888888877754
No 198
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=35.69 E-value=37 Score=20.26 Aligned_cols=18 Identities=17% Similarity=0.004 Sum_probs=9.4
Q ss_pred eehHHHHHHHHHHHHHHH
Q 039203 106 ICTLVGSFVVSFFVLYYL 123 (125)
Q Consensus 106 ~~~lI~~lvviflvly~l 123 (125)
++..++.+.++|.+.|++
T Consensus 23 ww~~~f~~tivfa~~Y~~ 40 (51)
T PF14715_consen 23 WWLWLFYGTIVFAVGYLV 40 (51)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444445566666654
No 199
>PRK00295 hypothetical protein; Provisional
Probab=35.60 E-value=1.1e+02 Score=19.05 Aligned_cols=36 Identities=0% Similarity=0.111 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHH
Q 039203 62 IHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMV 97 (125)
Q Consensus 62 I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v 97 (125)
+..-+.-|.+.+++|++.+..-...+..-.+.+..+
T Consensus 10 LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 10 LESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666677777777766665555555555444
No 200
>PRK00736 hypothetical protein; Provisional
Probab=35.52 E-value=1.1e+02 Score=19.04 Aligned_cols=37 Identities=3% Similarity=0.200 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHH
Q 039203 62 IHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVF 98 (125)
Q Consensus 62 I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~ 98 (125)
+..-+.-|.+.+++|++.+..-...|..-.+++..+.
T Consensus 10 LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~ 46 (68)
T PRK00736 10 LEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALT 46 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666777777777666655555555555543
No 201
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=35.51 E-value=1.6e+02 Score=23.42 Aligned_cols=32 Identities=25% Similarity=0.262 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039203 40 DNDKAIDGLKERAVFLKRLTGDIHEEVESHNR 71 (125)
Q Consensus 40 eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~ 71 (125)
+|.+.+-.|..-|..+++.-..|..||+.=..
T Consensus 110 ~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~s 141 (254)
T KOG2196|consen 110 ENGEKISGLYNEVVKVKLDQKRLDQELEFILS 141 (254)
T ss_pred hCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34556666777777777888888888764333
No 202
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=35.50 E-value=1.2e+02 Score=22.19 Aligned_cols=62 Identities=13% Similarity=0.189 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHhcCCcceehHHHHHHHHHHHHHH
Q 039203 52 AVFLKRLTGDIHE-EVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLVGSFVVSFFVLYY 122 (125)
Q Consensus 52 V~~LK~ia~~I~~-El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~~~~~~~~~lI~~lvviflvly~ 122 (125)
...|++++..+|. .++.|.+.|+-.-. .|+........-.+ ...++|-...++..+|+|+.+
T Consensus 107 ~eiL~~lG~~LG~~D~e~Q~k~i~L~~~-------~L~~~~~~a~~~~~--k~~Kmy~~LGvl~Gl~lvIll 169 (170)
T TIGR02833 107 KEILLQFGKTLGESDREGQQKHINLTLE-------HLERQLTEAEDEQK--KNEKMYRYLGVLVGLMIVLLL 169 (170)
T ss_pred HHHHHHHHHHHCcCcHHHHHHHHHHHHH-------HHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHHHh
Confidence 3445566666653 35555554443333 33333333333222 234566667777777776655
No 203
>PF12420 DUF3671: Protein of unknown function ; InterPro: IPR022139 This domain family is found in eukaryotes, and is typically between 96 and 116 amino acids in length.
Probab=35.38 E-value=40 Score=22.96 Aligned_cols=17 Identities=18% Similarity=0.153 Sum_probs=7.8
Q ss_pred HhhhhhhhhHHHHHHHH
Q 039203 81 DASRGIMSGTMDRFKMV 97 (125)
Q Consensus 81 d~t~~~L~~t~~rl~~v 97 (125)
++-....+...+..+++
T Consensus 24 ~k~~~~~n~~kk~fkki 40 (104)
T PF12420_consen 24 DKLKKDPNIDKKKFKKI 40 (104)
T ss_pred HHHhhCCChhHHHHHHH
Confidence 33334444445555553
No 204
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=35.20 E-value=2.3e+02 Score=22.57 Aligned_cols=34 Identities=18% Similarity=0.389 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhh
Q 039203 55 LKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMS 88 (125)
Q Consensus 55 LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~ 88 (125)
+...+..+.+++..=.+-++++...++++....+
T Consensus 238 I~~~~~~l~~~~~~~~~~~~~l~k~l~~a~~~~~ 271 (304)
T PF02646_consen 238 IAELAGKLYDRFGKFVEHLEKLGKSLDKAVKSYN 271 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444433333344443333333333
No 205
>PRK01770 sec-independent translocase; Provisional
Probab=34.99 E-value=1.9e+02 Score=21.56 Aligned_cols=40 Identities=15% Similarity=0.263 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhh
Q 039203 43 KAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDAS 83 (125)
Q Consensus 43 ~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t 83 (125)
+.+-.+...+..+|.++.++.+|++..-+ ++++...+...
T Consensus 27 ~~~r~lg~~i~~~R~~~~~~k~e~~~E~~-~~El~~~l~~~ 66 (171)
T PRK01770 27 VAVKTVAGWIRALRSLATTVQNELTQELK-LQELQDSLKKV 66 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHH
Confidence 45667888899999999999999888764 56665554443
No 206
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=34.81 E-value=40 Score=20.35 Aligned_cols=18 Identities=11% Similarity=-0.033 Sum_probs=9.6
Q ss_pred ehHHHHHHHHHHHHHHHh
Q 039203 107 CTLVGSFVVSFFVLYYLI 124 (125)
Q Consensus 107 ~~lI~~lvviflvly~l~ 124 (125)
||+-++++++||--|..+
T Consensus 3 wWvY~vi~gI~~S~ym~v 20 (52)
T PF14147_consen 3 WWVYFVIAGIIFSGYMAV 20 (52)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 344455555666566554
No 207
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=34.63 E-value=1.3e+02 Score=22.07 Aligned_cols=62 Identities=8% Similarity=0.117 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHhcCCcceehHHHHHHHHHHHHHH
Q 039203 52 AVFLKRLTGDIHE-EVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLVGSFVVSFFVLYY 122 (125)
Q Consensus 52 V~~LK~ia~~I~~-El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~~~~~~~~~lI~~lvviflvly~ 122 (125)
...|++++..+|. .++.|.+.|+-.- ..|+........-.+ ...++|-...++..+|+|+.+
T Consensus 108 ~eiL~~lg~~LG~~D~e~Q~k~i~L~~-------e~L~~~~~~a~~~~~--k~~Kmy~~LGvl~Gl~lvIlL 170 (171)
T PRK08307 108 IEILLQFGKTLGQSDREGQQKHIRLAL-------EHLEREEEEAEEEQK--KNEKMYKYLGFLAGLLIVILL 170 (171)
T ss_pred HHHHHHHHHHHCcCcHHHHHHHHHHHH-------HHHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHHHh
Confidence 3445666666653 3555555444333 333333333333322 234566667777777776654
No 208
>PF06916 DUF1279: Protein of unknown function (DUF1279); InterPro: IPR009688 This entry represents the C terminus (approx. 120 residues) of a number of eukaryotic proteins of unknown function.
Probab=34.24 E-value=36 Score=22.30 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=21.1
Q ss_pred HHHHHHHHhcCCcceehHHHHHHHHHHHHHHHh
Q 039203 92 DRFKMVFEKKSNRRICTLVGSFVVSFFVLYYLI 124 (125)
Q Consensus 92 ~rl~~v~~~~~~~~~~~lI~~lvviflvly~l~ 124 (125)
+|++.++++-+.-....-+.+.++-|.++|+.+
T Consensus 1 qr~K~l~k~YG~~~l~vy~~~s~~~~~~~y~~v 33 (91)
T PF06916_consen 1 QRLKQLFKKYGYVALGVYLGLSFISLGSCYLAV 33 (91)
T ss_pred CcHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHH
Confidence 367888887665555555555566666666654
No 209
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=33.45 E-value=1.9e+02 Score=21.07 Aligned_cols=64 Identities=16% Similarity=0.186 Sum_probs=37.6
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHhhhhhhhhHHHHHHHHH
Q 039203 35 GIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESH----NRLLDRMGNSMDASRGIMSGTMDRFKMVF 98 (125)
Q Consensus 35 ~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Q----n~lLD~l~~~~d~t~~~L~~t~~rl~~v~ 98 (125)
+.|+.|-...++.+.+.+..+..-...+..++.+= ..-.+.+.+.+..+...+..+..+|..+=
T Consensus 98 ~~L~~el~~~l~~~~~~~~~~~~~~~~~~~~vsdiv~~~~~~~~~~~~~~~~~~~~l~~~lekL~~fd 165 (204)
T PF04740_consen 98 DFLESELKKKLNQLKEQIEDLQDEINSILSSVSDIVSLPKPSSSSFIDSLEKAKKKLQETLEKLRAFD 165 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555656666666666666655555555554332 11256666666666777777777776664
No 210
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=33.04 E-value=1.8e+02 Score=20.70 Aligned_cols=55 Identities=9% Similarity=0.154 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHH
Q 039203 44 AIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVF 98 (125)
Q Consensus 44 ~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~ 98 (125)
..+.+...+..+..-......||.+=..-+..++..++.+...|..+..++...-
T Consensus 15 r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~ 69 (143)
T PF12718_consen 15 RAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESE 69 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 5666677777777777777777777666677777777777777766666665553
No 211
>PRK04325 hypothetical protein; Provisional
Probab=32.99 E-value=1.3e+02 Score=19.06 Aligned_cols=37 Identities=5% Similarity=0.258 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHH
Q 039203 61 DIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMV 97 (125)
Q Consensus 61 ~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v 97 (125)
++..-+.-|.+.+++|++.+..-...+..-.+.+..+
T Consensus 13 ~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 13 ELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566677777777777777775555555554444
No 212
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=32.91 E-value=52 Score=23.90 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=22.3
Q ss_pred HHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh
Q 039203 70 NRLLDRMGNSMDASRGIMSGTMDRFKMVFEK 100 (125)
Q Consensus 70 n~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~ 100 (125)
++-+|.++.+.++..+.+.....+++..+..
T Consensus 72 ~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~ 102 (161)
T PF04420_consen 72 NRKLDKLEEELEKLNKSLSSEKSSFDKSLSK 102 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777777777654
No 213
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=32.66 E-value=1.3e+02 Score=20.59 Aligned_cols=12 Identities=17% Similarity=0.257 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHh
Q 039203 89 GTMDRFKMVFEK 100 (125)
Q Consensus 89 ~t~~rl~~v~~~ 100 (125)
.+|+||-.++++
T Consensus 16 ~AMrRLl~~LRq 27 (103)
T PF11027_consen 16 MAMRRLLNLLRQ 27 (103)
T ss_pred HHHHHHHHHHHH
Confidence 356666666654
No 214
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=32.55 E-value=37 Score=18.69 Aligned_cols=16 Identities=13% Similarity=0.175 Sum_probs=6.5
Q ss_pred eehHHHHHHHHHHHHH
Q 039203 106 ICTLVGSFVVSFFVLY 121 (125)
Q Consensus 106 ~~~lI~~lvviflvly 121 (125)
.+.+|+++.+.++++|
T Consensus 8 al~vv~iLt~~ILvFW 23 (34)
T PF08113_consen 8 ALGVVMILTAFILVFW 23 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeeeHHHHHHHHHHHH
Confidence 3444444433333333
No 215
>PRK04098 sec-independent translocase; Provisional
Probab=32.40 E-value=2.1e+02 Score=21.15 Aligned_cols=53 Identities=8% Similarity=0.140 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHH
Q 039203 43 KAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKM 96 (125)
Q Consensus 43 ~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~ 96 (125)
+..-.++..+..+|..+.+..++++..-. ++++...+.+....|..+...+..
T Consensus 27 ~~~r~lGk~ir~~K~~~~~~k~~l~~Ei~-~~elk~e~~k~k~~l~~~~~~l~~ 79 (158)
T PRK04098 27 QAMVDIAKFFKAVKKTINDAKSTLDKEIN-IEEIKEEALKYKKEFESAVESLKK 79 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556667777777777777777666654 456665555555555554444443
No 216
>PRK02119 hypothetical protein; Provisional
Probab=32.11 E-value=1.4e+02 Score=18.96 Aligned_cols=37 Identities=5% Similarity=0.249 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHH
Q 039203 61 DIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMV 97 (125)
Q Consensus 61 ~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v 97 (125)
++..-+.-|.+.|++|++.+..-...+..-.+.+..+
T Consensus 13 ~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 13 ELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566677777888777777775555555555544
No 217
>PRK10715 flk flagella biosynthesis regulator; Provisional
Probab=31.96 E-value=42 Score=27.63 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHhhhHHHhhh
Q 039203 53 VFLKRLTGDIHE--EVESHNRLLDRMGNSMDASR 84 (125)
Q Consensus 53 ~~LK~ia~~I~~--El~~Qn~lLD~l~~~~d~t~ 84 (125)
..|..+...... |-.+|..+.|=....|..+-
T Consensus 228 ptL~~L~~lLkQp~~~~erQal~Dy~rq~Fg~t~ 261 (335)
T PRK10715 228 PTLESLQAALKQPLDAQEQQLLSDYAQQRFQASP 261 (335)
T ss_pred cHHHHHHHHhCCCCChhHHHHHHHHHHHHhCCCC
Confidence 355566666655 33444456666666665543
No 218
>PRK00846 hypothetical protein; Provisional
Probab=31.90 E-value=1.5e+02 Score=19.26 Aligned_cols=39 Identities=8% Similarity=0.233 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHH
Q 039203 61 DIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFE 99 (125)
Q Consensus 61 ~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~ 99 (125)
++..-+.-|...+++|+..+..-...+..-...+..+..
T Consensus 17 ~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~ 55 (77)
T PRK00846 17 ELETRLSFQEQALTELSEALADARLTGARNAELIRHLLE 55 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455667777777777777766666666666555543
No 219
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=31.81 E-value=76 Score=16.83 Aligned_cols=7 Identities=14% Similarity=0.339 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 039203 116 SFFVLYY 122 (125)
Q Consensus 116 iflvly~ 122 (125)
++++.|.
T Consensus 13 ~lLl~YL 19 (29)
T PRK14750 13 LLLLGYL 19 (29)
T ss_pred HHHHHHH
Confidence 3333343
No 220
>PF06363 Picorna_P3A: Picornaviridae P3A protein; InterPro: IPR009419 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C))[]. This entry consists of the parechovirus P3A protein. P3A has been identified as a genome-linked protein (VPg), which is involved in replication [].; GO: 0019012 virion
Probab=31.65 E-value=1.4e+02 Score=20.28 Aligned_cols=42 Identities=12% Similarity=0.274 Sum_probs=20.5
Q ss_pred hhhhhhhhHHHHHHHHHHhcCCcceehHHHHH---HHHHHHHHHHhC
Q 039203 82 ASRGIMSGTMDRFKMVFEKKSNRRICTLVGSF---VVSFFVLYYLIR 125 (125)
Q Consensus 82 ~t~~~L~~t~~rl~~v~~~~~~~~~~~lI~~l---vviflvly~l~k 125 (125)
++-.-.++-++++..+..+ +++|+.++-.+ +-|+++.|.++|
T Consensus 49 kv~~W~~~k~k~~~~FV~R--Nk~W~T~~S~~tS~isIL~LV~~~~K 93 (100)
T PF06363_consen 49 KVKSWVKNKMKSMLSFVER--NKAWFTVVSAVTSFISILLLVTKIFK 93 (100)
T ss_pred HHHHHHHHHHHHHHHHHHH--cchHhhHHHHHHHHHHHHHHHHHHHh
Confidence 3334445555666666655 34445433222 225555565554
No 221
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=31.65 E-value=31 Score=28.18 Aligned_cols=19 Identities=0% Similarity=0.041 Sum_probs=13.8
Q ss_pred ehHHHHHHHHHHHHHHHhC
Q 039203 107 CTLVGSFVVSFFVLYYLIR 125 (125)
Q Consensus 107 ~~lI~~lvviflvly~l~k 125 (125)
.-.++++|++++|.|+++|
T Consensus 156 ~~~lf~ii~l~vla~ivY~ 174 (318)
T PF06682_consen 156 GSWLFWIIFLLVLAFIVYS 174 (318)
T ss_pred cchhhhHHHHHHHHHHHHH
Confidence 4467777778888888764
No 222
>PF10854 DUF2649: Protein of unknown function (DUF2649); InterPro: IPR021217 This entry is represented by Spiroplasma phage 1-C74, Orf10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members in this family of proteins are also annotated as Plectrovirus orf 10 transmembrane proteins however currently no function is known.
Probab=31.44 E-value=62 Score=20.28 Aligned_cols=16 Identities=25% Similarity=0.856 Sum_probs=8.1
Q ss_pred hHHHHHHHHHHHHHHH
Q 039203 108 TLVGSFVVSFFVLYYL 123 (125)
Q Consensus 108 ~lI~~lvviflvly~l 123 (125)
.+|.+=+++||+.|++
T Consensus 40 ~MiGiWiVilFLtWf~ 55 (67)
T PF10854_consen 40 IMIGIWIVILFLTWFL 55 (67)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444445555555543
No 223
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=31.31 E-value=2.1e+02 Score=24.89 Aligned_cols=49 Identities=8% Similarity=0.161 Sum_probs=31.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhh
Q 039203 39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIM 87 (125)
Q Consensus 39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L 87 (125)
.|+...+++|.+++..||+=...+....++...-|++++........++
T Consensus 72 teqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 72 TEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4455578888888888875555444555555556666666666655555
No 224
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=31.27 E-value=41 Score=20.99 Aligned_cols=9 Identities=0% Similarity=0.242 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 039203 110 VGSFVVSFF 118 (125)
Q Consensus 110 I~~lvvifl 118 (125)
+.+++++++
T Consensus 46 ~~~li~aLi 54 (64)
T COG4068 46 LMFLILALI 54 (64)
T ss_pred HHHHHHHHH
Confidence 333433333
No 225
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=31.11 E-value=1.3e+02 Score=18.59 Aligned_cols=39 Identities=3% Similarity=0.217 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh
Q 039203 62 IHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK 100 (125)
Q Consensus 62 I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~ 100 (125)
+..-+.-|.+.+++|++.+..-...+..-.+.+..+..+
T Consensus 9 LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~r 47 (69)
T PF04102_consen 9 LEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRER 47 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666777666666666666666666665443
No 226
>PRK15396 murein lipoprotein; Provisional
Probab=30.66 E-value=1.5e+02 Score=19.17 Aligned_cols=48 Identities=15% Similarity=0.157 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHH
Q 039203 44 AIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVF 98 (125)
Q Consensus 44 ~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~ 98 (125)
.+|.|++.|+.|+.-...+..+++.=..-. ..+..--.+++.||..+.
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~-------~~a~~eA~raN~RlDn~~ 73 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDV-------QAAKDDAARANQRLDNQA 73 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 455666666665544444444443333322 333344445555555543
No 227
>PHA02657 hypothetical protein; Provisional
Probab=30.64 E-value=52 Score=22.05 Aligned_cols=6 Identities=17% Similarity=0.982 Sum_probs=2.5
Q ss_pred HHHHHH
Q 039203 116 SFFVLY 121 (125)
Q Consensus 116 iflvly 121 (125)
+|+++|
T Consensus 41 ~flLLY 46 (95)
T PHA02657 41 IYLLIY 46 (95)
T ss_pred HHHHHH
Confidence 444444
No 228
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=30.52 E-value=1.5e+02 Score=18.94 Aligned_cols=29 Identities=10% Similarity=0.030 Sum_probs=17.0
Q ss_pred HHHHHHHhhhHHHhhhhhhhhHHHHHHHH
Q 039203 69 HNRLLDRMGNSMDASRGIMSGTMDRFKMV 97 (125)
Q Consensus 69 Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v 97 (125)
...-|..+-..|.....++.+..+|+.++
T Consensus 62 y~~KL~~ikkrm~~l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 62 YVKKLVNIKKRMSNLHERLQKLKKRADKL 90 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33345566666666666666666665554
No 229
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=30.50 E-value=62 Score=18.70 Aligned_cols=17 Identities=12% Similarity=0.016 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHHHHh
Q 039203 108 TLVGSFVVSFFVLYYLI 124 (125)
Q Consensus 108 ~lI~~lvviflvly~l~ 124 (125)
+++++++.+.++..+++
T Consensus 14 F~lVglv~i~iva~~iY 30 (43)
T PF08114_consen 14 FCLVGLVGIGIVALFIY 30 (43)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34555555555554444
No 230
>PF03356 Pox_LP_H2: Viral late protein H2; InterPro: IPR005023 This entry represents the late protein H2 found in Vaccinia and other poxviruses. This protein is a highly conserved viral membrane protein found in all sequenced poxviruses, containing an N-terminal transmembrane domain and four conserved cysteines thought to be involved in the formation of intramolecular disulphide bonds []. H2 has been shown to be necessary for entry into the host cell and virus-induced cell-cell fusion, but is not required for virus morphogenesis or the attachment of virus particles to cells. It is part of an entry-fusion complex composed of eight viral membrane proteins [].
Probab=30.13 E-value=69 Score=24.22 Aligned_cols=36 Identities=8% Similarity=0.282 Sum_probs=19.2
Q ss_pred hhhHHHHHHHHHHhcCCcceehHHHHHHHHHHHHHH
Q 039203 87 MSGTMDRFKMVFEKKSNRRICTLVGSFVVSFFVLYY 122 (125)
Q Consensus 87 L~~t~~rl~~v~~~~~~~~~~~lI~~lvviflvly~ 122 (125)
|.-+..+-.+..+-++....|..++++++..+++|+
T Consensus 13 LeY~Re~~~~~i~~ak~sTl~ffvlil~iS~llf~f 48 (189)
T PF03356_consen 13 LEYAREKETKSIRYAKVSTLCFFVLILIISVLLFWF 48 (189)
T ss_pred hHhHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHhh
Confidence 444555666665555445566655555554444443
No 231
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=30.08 E-value=3e+02 Score=22.22 Aligned_cols=57 Identities=11% Similarity=0.078 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHhc
Q 039203 45 IDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKK 101 (125)
Q Consensus 45 Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~~ 101 (125)
+..+......++.--...-.+......-+-++.+..++..+++..+...+.++-+.+
T Consensus 80 l~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktN 136 (314)
T PF04111_consen 80 LEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTN 136 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333333333343333333334444444555666788888888888888888886553
No 232
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=29.63 E-value=2.3e+02 Score=20.73 Aligned_cols=55 Identities=13% Similarity=0.167 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHH
Q 039203 43 KAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMV 97 (125)
Q Consensus 43 ~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v 97 (125)
..+..+...+..+...+..+..-+..-.....++...+......+....+.+..+
T Consensus 32 ~~~~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 86 (262)
T smart00283 32 ASIEEVAANADEIAATAQSAAEAAEEGREAVEDAITAMDQIREVVEEAVSAVEEL 86 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333333333333333333333333333333333
No 233
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=29.43 E-value=1.6e+02 Score=18.95 Aligned_cols=28 Identities=11% Similarity=0.165 Sum_probs=13.9
Q ss_pred HHHHhhhHHHhhhhhhhhHHHHHHHHHH
Q 039203 72 LLDRMGNSMDASRGIMSGTMDRFKMVFE 99 (125)
Q Consensus 72 lLD~l~~~~d~t~~~L~~t~~rl~~v~~ 99 (125)
-|+.++..++.....|+++...+.++-.
T Consensus 9 ~Lr~IN~~ie~~~~~L~~a~~~~~~v~~ 36 (78)
T PF08651_consen 9 QLRKINPVIEGLIETLRSAKSNMNRVQE 36 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555443
No 234
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=29.20 E-value=2.4e+02 Score=20.88 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=22.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039203 38 EHDNDKAIDGLKERAVFLKRLTGDIHEEVESHN 70 (125)
Q Consensus 38 e~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn 70 (125)
.+.-...|..|.+.+..|+..|..|-+|++.-.
T Consensus 47 ~~~t~~kL~~I~eQi~~Lq~QA~~ile~~~~~~ 79 (159)
T PF10504_consen 47 RANTCNKLEVIAEQIRFLQEQARKILEEAERNE 79 (159)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344556677777777777777777777776554
No 235
>PF13967 RSN1_TM: Late exocytosis, associated with Golgi transport
Probab=29.04 E-value=44 Score=23.80 Aligned_cols=23 Identities=35% Similarity=0.680 Sum_probs=16.0
Q ss_pred CcceehHHHHHHHHHHHHHHHhC
Q 039203 103 NRRICTLVGSFVVSFFVLYYLIR 125 (125)
Q Consensus 103 ~~~~~~lI~~lvviflvly~l~k 125 (125)
.+.|..+++..++.++++|+++|
T Consensus 134 ~~lw~h~v~~~i~~~~~~~~l~~ 156 (157)
T PF13967_consen 134 SRLWAHVVFAYIFTFYVLYLLWR 156 (157)
T ss_pred CeehHHHHHHHHHHHHHHhhhee
Confidence 44455566667778888888765
No 236
>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III. This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.
Probab=29.00 E-value=43 Score=26.40 Aligned_cols=20 Identities=10% Similarity=-0.072 Sum_probs=12.1
Q ss_pred ceehHHHHHHHHHHHHHHHh
Q 039203 105 RICTLVGSFVVSFFVLYYLI 124 (125)
Q Consensus 105 ~~~~lI~~lvviflvly~l~ 124 (125)
.||..++++.+||-+.||++
T Consensus 28 ~ww~~~f~~~i~~~~~y~~~ 47 (285)
T TIGR00782 28 RWWLWTFYATIVWGFGYLVA 47 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35555566666777777653
No 237
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=28.96 E-value=1.7e+02 Score=18.96 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=9.1
Q ss_pred HHHHhhhHHHhhhhhhhhHH
Q 039203 72 LLDRMGNSMDASRGIMSGTM 91 (125)
Q Consensus 72 lLD~l~~~~d~t~~~L~~t~ 91 (125)
+-+.+...++.+..++....
T Consensus 32 ~r~~~~~~~~~a~~~~~~~~ 51 (94)
T PF05957_consen 32 ARDRAEEALDDARDRAEDAA 51 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444544444444433
No 238
>PF06215 ISAV_HA: Infectious salmon anaemia virus haemagglutinin; InterPro: IPR010408 This entry represents the haemagglutinin-esterase fusion glycoprotein (HEF) found specifically in infectious anaemia virus (ISAV), an orthomyxovirus-type virus that is an important fish pathogen in marine aquaculture [, ]. Other viruses, such as influenza C virus, coronaviruses and toroviruses, also contain surface HEF proteins, but whereas they usually bind 9-O-acetylsialic acid receptors, ISAV HEF appears to bind 4-O- acetylsialic acid receptors []. Haemagglutinin-esterase fusion glycoprotein is a multi-functional protein embedded in the viral envelope of ISAV. HEF is required for infectivity, and functions to recognise the host cell surface receptor, to fuse the viral and host cell membranes, and to destroy the receptor upon host cell infection. The haemagglutinin region of HEF is responsible for receptor recognition and membrane fusion. The serine esterase region of HEF is responsible for the destruction of the receptor, though it appears to be distinct from the esterase domain found in influenza C virus. Haemagglutinin-esterase glycoproteins must usually be cleaved by the host's trypsin-like proteases to produce two peptides (HEF1 and HEF2) necessary for the virus to be infectious. The cleaved HEF protein can then fuse the viral envelope to the cellular membrane of the host cell, which allows the virus to infect the host cell. More information about haemagglutinin proteins can be found at Protein of the Month: Bird Flu, Haemagglutinin [].
Probab=28.93 E-value=23 Score=28.94 Aligned_cols=38 Identities=13% Similarity=0.224 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhh
Q 039203 52 AVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSG 89 (125)
Q Consensus 52 V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~ 89 (125)
+..|.+--..|-.|++.|.+|+.++.-....+..+...
T Consensus 306 qtslgntdt~imREvalhkEMiskl~rNitdV~~~v~a 343 (391)
T PF06215_consen 306 QTSLGNTDTQIMREVALHKEMISKLQRNITDVKIRVDA 343 (391)
T ss_pred hhcccCcchHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34466777889999999999999998877776665543
No 239
>PF11189 DUF2973: Protein of unknown function (DUF2973); InterPro: IPR021355 This entry is represented by Bacteriophage Syn9, Gp224. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently they have no known function.
Probab=28.84 E-value=56 Score=20.44 Aligned_cols=19 Identities=11% Similarity=0.300 Sum_probs=10.4
Q ss_pred eehHHHHHHHHHHHHHHHh
Q 039203 106 ICTLVGSFVVSFFVLYYLI 124 (125)
Q Consensus 106 ~~~lI~~lvviflvly~l~ 124 (125)
+.|+.+|++++++.+-.++
T Consensus 4 llY~~af~~L~~~a~~~m~ 22 (65)
T PF11189_consen 4 LLYILAFTILLFLAFRNMI 22 (65)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3455666666665554443
No 240
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.68 E-value=1.7e+02 Score=18.88 Aligned_cols=37 Identities=3% Similarity=0.238 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHH
Q 039203 63 HEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFE 99 (125)
Q Consensus 63 ~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~ 99 (125)
..-+.-|.+.|++|++.+.....-+.+...+++.+.+
T Consensus 14 E~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~ 50 (72)
T COG2900 14 EIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTE 50 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777777777666555555555555555544
No 241
>PF06661 VirE3: VirE3; InterPro: IPR009550 This family represents a conserved region within Agrobacterium tumefaciens VirE3. Agrobacterium tumefaciens (a plant pathogen) has a tumour-inducing (Ti) plasmid of which part, the transfer (T)-region, is transferred to plant cells during the infection process. Vir proteins mediate the processing of the T-region and the transfer of a single-stranded (ss) DNA copy of this region, the T-strand, into the recipient cells. VirE3 is a translocated effector protein, but its specific role has not been established [].
Probab=28.54 E-value=60 Score=26.32 Aligned_cols=46 Identities=17% Similarity=0.454 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh
Q 039203 55 LKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK 100 (125)
Q Consensus 55 LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~ 100 (125)
|-.-+..++.+|..|-.|++.-+-.+|.+.+.|+.+.--+.++.+.
T Consensus 220 ld~egne~grdi~shrrl~nkrsa~yd~~tgql~s~kht~gkiyks 265 (317)
T PF06661_consen 220 LDKEGNELGRDISSHRRLFNKRSAVYDEATGQLKSAKHTFGKIYKS 265 (317)
T ss_pred HcccchhhhhhHHHHHHHhhhcccccccccchhhhhhhhhhHHHHH
Confidence 4456889999999999999999999999999999998888888764
No 242
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=28.53 E-value=3.7e+02 Score=22.80 Aligned_cols=53 Identities=13% Similarity=0.154 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHH
Q 039203 45 IDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMV 97 (125)
Q Consensus 45 Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v 97 (125)
.+.+......+...+..+...+++|..-+.++...++.....+.........+
T Consensus 272 s~~v~~~s~el~~~~~~ls~~~~~qa~~i~~i~~s~eeis~~~~e~~~~~~~~ 324 (553)
T PRK15048 272 SDAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNADNARQA 324 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555666666677666666666666665555544444433
No 243
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=28.48 E-value=38 Score=24.62 Aligned_cols=11 Identities=36% Similarity=0.963 Sum_probs=6.7
Q ss_pred HHHHHHHHHhC
Q 039203 115 VSFFVLYYLIR 125 (125)
Q Consensus 115 viflvly~l~k 125 (125)
|++|++|.++|
T Consensus 93 I~~f~lY~l~K 103 (152)
T PF15361_consen 93 IVLFILYTLFK 103 (152)
T ss_pred HHHHHHHHHHH
Confidence 34455777765
No 244
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=28.43 E-value=2.4e+02 Score=20.56 Aligned_cols=53 Identities=15% Similarity=0.285 Sum_probs=25.9
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-------HHhhhhhhhhHHHHHHHHHH
Q 039203 44 AID-GLKERAVFLKRLTGDIHEEVESHNRLLDRMGNS-------MDASRGIMSGTMDRFKMVFE 99 (125)
Q Consensus 44 ~Ld-~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~-------~d~t~~~L~~t~~rl~~v~~ 99 (125)
.|+ ++...+..+++....+.+++. ..+.++.+- .......+..+.+++...++
T Consensus 99 ~L~~el~~~l~~~~~~~~~~~~~~~---~~~~~vsdiv~~~~~~~~~~~~~~~~~~~~l~~~le 159 (204)
T PF04740_consen 99 FLESELKKKLNQLKEQIEDLQDEIN---SILSSVSDIVSLPKPSSSSFIDSLEKAKKKLQETLE 159 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---hhccchHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 344 555666666666555555552 233332222 34444455555555554444
No 245
>cd06845 Bcl-2_like Apoptosis regulator proteins of the Bcl-2 family, named after B-cell lymphoma 2. This alignment model spans what have been described as Bcl-2 homology regions BH1, BH2, BH3, and BH4. Many members of this family have an additional C-terminal transmembrane segment. Some homologous proteins, which are not included in this model, may miss either the BH4 (Bax, Bak) or the BH2 (Bcl-X(S)) region, and some appear to only share the BH3 region (Bik, Bim, Bad, Bid, Egl-1). This family is involved in the regulation of the outer mitochondrial membrane's permeability and in promoting or preventing the release of apoptogenic factors, which in turn may trigger apoptosis by activating caspases. Bcl-2 and the closely related Bcl-X(L) are anti-apoptotic key regulators of programmed cell death. They are assumed to function via heterodimeric protein-protein interactions, binding pro-apoptotic proteins such as Bad (BCL2-antagonist of cell death), Bid, and Bim, by specifically interacting
Probab=28.41 E-value=2.1e+02 Score=19.91 Aligned_cols=33 Identities=30% Similarity=0.507 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhh
Q 039203 50 ERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRG 85 (125)
Q Consensus 50 ~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~ 85 (125)
.....|+.++..|.. .+...++++-..++.+..
T Consensus 34 ~~~~~Lr~~~dele~---~~~~~f~~~~~~l~~~~~ 66 (144)
T cd06845 34 EVAETLRRVGDELEE---KHRRLFENMCRQLNISPD 66 (144)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHhCCCcc
Confidence 344455555554444 234456666665543333
No 246
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=28.33 E-value=1.6e+02 Score=18.69 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=18.7
Q ss_pred HHHHHhhhHHHhhhhhhhhHHHH
Q 039203 71 RLLDRMGNSMDASRGIMSGTMDR 93 (125)
Q Consensus 71 ~lLD~l~~~~d~t~~~L~~t~~r 93 (125)
+.|++|+..+...+-++....+.
T Consensus 9 r~L~eiEr~L~~~DP~fa~~l~~ 31 (82)
T PF11239_consen 9 RRLEEIERQLRADDPRFAARLRS 31 (82)
T ss_pred HHHHHHHHHHHhcCcHHHHHhcc
Confidence 48999999998888887777666
No 247
>PF07225 NDUF_B4: NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); InterPro: IPR009866 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family contains human NADH-ubiquinone oxidoreductase subunit NDUFB4 and related sequences.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=28.30 E-value=46 Score=23.59 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=12.2
Q ss_pred eehHHHHHHHHHHHHHHHhC
Q 039203 106 ICTLVGSFVVSFFVLYYLIR 125 (125)
Q Consensus 106 ~~~lI~~lvviflvly~l~k 125 (125)
.++.++++++.++++|+++|
T Consensus 83 sllg~~~~v~P~i~~~~~~K 102 (125)
T PF07225_consen 83 SLLGLGFGVVPLIFYYYVLK 102 (125)
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 44445555666677777765
No 248
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=28.14 E-value=66 Score=18.49 Aligned_cols=9 Identities=33% Similarity=1.006 Sum_probs=4.2
Q ss_pred HHHHHHHHh
Q 039203 116 SFFVLYYLI 124 (125)
Q Consensus 116 iflvly~l~ 124 (125)
+|+.-|++.
T Consensus 27 ~~~~~~F~~ 35 (42)
T PF11346_consen 27 VFFIRYFIR 35 (42)
T ss_pred HHHHHHHHH
Confidence 444445443
No 249
>COG1470 Predicted membrane protein [Function unknown]
Probab=28.08 E-value=44 Score=29.02 Aligned_cols=20 Identities=20% Similarity=0.311 Sum_probs=12.8
Q ss_pred eehHHHHHHHHHHHHHHHhC
Q 039203 106 ICTLVGSFVVSFFVLYYLIR 125 (125)
Q Consensus 106 ~~~lI~~lvviflvly~l~k 125 (125)
.++-|++++++|+.+||++|
T Consensus 489 t~iGI~Ii~~~v~~L~fviR 508 (513)
T COG1470 489 TYIGIAIIVLVVLGLIFVIR 508 (513)
T ss_pred hhhhHHHHHHHHHHHHhhhH
Confidence 34446666667777777765
No 250
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=28.01 E-value=2.7e+02 Score=22.60 Aligned_cols=19 Identities=16% Similarity=0.440 Sum_probs=11.5
Q ss_pred hhhhhhhhHHHHHHHHHHh
Q 039203 82 ASRGIMSGTMDRFKMVFEK 100 (125)
Q Consensus 82 ~t~~~L~~t~~rl~~v~~~ 100 (125)
..++.|..+.+++....+.
T Consensus 136 E~sG~L~~~L~~~a~~~~~ 154 (399)
T TIGR02120 136 EASGALDAVLERLADYLEE 154 (399)
T ss_pred hhcCCHHHHHHHHHHHHHH
Confidence 3445667777766666553
No 251
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=27.99 E-value=1e+02 Score=25.16 Aligned_cols=17 Identities=0% Similarity=0.079 Sum_probs=7.1
Q ss_pred hhhHHHhhhhhhhhHHH
Q 039203 76 MGNSMDASRGIMSGTMD 92 (125)
Q Consensus 76 l~~~~d~t~~~L~~t~~ 92 (125)
|++.+.+....+++..+
T Consensus 141 L~~~L~~~a~~~~~~~~ 157 (399)
T TIGR02120 141 LDAVLERLADYLEERQA 157 (399)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444333
No 252
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=27.89 E-value=2.3e+02 Score=24.05 Aligned_cols=46 Identities=11% Similarity=0.279 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh
Q 039203 55 LKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK 100 (125)
Q Consensus 55 LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~ 100 (125)
++.-...+.++++.-++-++.++..++....++.+...+|..++.+
T Consensus 404 l~~~~~~l~~~i~~l~~~i~~~~~rl~~~e~rl~~qF~ame~~~s~ 449 (462)
T PRK08032 404 IKTATDGVNKTLKKLTKQYNAVSDSIDATIARYKAQFTQLDKLMTS 449 (462)
T ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455777777777778888888888888888777777777665
No 253
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=27.81 E-value=3.1 Score=27.47 Aligned_cols=14 Identities=29% Similarity=0.332 Sum_probs=2.9
Q ss_pred cceehHHHHHHHHH
Q 039203 104 RRICTLVGSFVVSF 117 (125)
Q Consensus 104 ~~~~~lI~~lvvif 117 (125)
+.|+|+++-+++||
T Consensus 65 rrwlwLlikl~lV~ 78 (81)
T PF14812_consen 65 RRWLWLLIKLFLVF 78 (81)
T ss_dssp ------TTTTHCCH
T ss_pred chhHHHHHHHHHHh
Confidence 34444433333333
No 254
>PRK13275 mtrF tetrahydromethanopterin S-methyltransferase subunit F; Provisional
Probab=27.72 E-value=1.5e+02 Score=18.81 Aligned_cols=12 Identities=42% Similarity=0.470 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHh
Q 039203 113 FVVSFFVLYYLI 124 (125)
Q Consensus 113 lvviflvly~l~ 124 (125)
++++.++++++.
T Consensus 55 Lv~ip~~l~~~~ 66 (67)
T PRK13275 55 LVVVPPLLYGLV 66 (67)
T ss_pred HHHHHHHHHHHh
Confidence 344555555554
No 255
>PHA02855 anti-apoptotic membrane protein; Provisional
Probab=27.69 E-value=1.2e+02 Score=22.80 Aligned_cols=15 Identities=33% Similarity=0.578 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHhC
Q 039203 111 GSFVVSFFVLYYLIR 125 (125)
Q Consensus 111 ~~lvviflvly~l~k 125 (125)
+.+|.++.++|+++|
T Consensus 159 f~i~~~i~~~yY~~K 173 (180)
T PHA02855 159 FVIVGIIILLYYLLK 173 (180)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334556677777765
No 256
>PF11031 Phage_holin_T: Bacteriophage T holin; InterPro: IPR020982 One mechanism by which bacteriophages effect host lysis begins with the accumulation of a holin in the host membrane and an endolysin in the host cytoplasm during late gene expression. At an allele-specific time, the holin disrupts the membrane, thus allowing the endolysin to enter the periplasm and degrade the cell wall peptidoglycan. This entry represents a specific holin, known as T, which has an unusual C-terminal periplasmic domain thought to be involved in the transduction of environmental information for the real-time control of lysis timing [].
Probab=27.56 E-value=72 Score=24.66 Aligned_cols=38 Identities=11% Similarity=0.148 Sum_probs=18.9
Q ss_pred hhhhHHHHHHHHHHhcCCcc-eehHHHHHHHHHHHHHHH
Q 039203 86 IMSGTMDRFKMVFEKKSNRR-ICTLVGSFVVSFFVLYYL 123 (125)
Q Consensus 86 ~L~~t~~rl~~v~~~~~~~~-~~~lI~~lvviflvly~l 123 (125)
+...-..-+.++++...... +..-++.++++|++..++
T Consensus 8 ~~~~l~~lLdrlfkd~~tgk~L~~Rv~~iivlfim~l~w 46 (216)
T PF11031_consen 8 KSDILFGLLDRLFKDNKTGKVLFSRVIVIIVLFIMALIW 46 (216)
T ss_pred hHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhee
Confidence 44455566777877544433 333344444444433333
No 257
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.55 E-value=2.2e+02 Score=23.23 Aligned_cols=85 Identities=12% Similarity=0.157 Sum_probs=44.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh---cC-Cc-ceehHHHHH
Q 039203 39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK---KS-NR-RICTLVGSF 113 (125)
Q Consensus 39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~---~~-~~-~~~~lI~~l 113 (125)
+.+|+.+-+=...|..+..--.+.++=..+=..|.-+=+.-+|+.+=.+..+.-+++.-.+. +. .. +.=-+.|++
T Consensus 207 e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~~~i~ 286 (305)
T KOG0809|consen 207 ENNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKMKVIL 286 (305)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCceEehH
Confidence 44555555555555555544444444444444455555555566665666666555555442 22 21 244455555
Q ss_pred HHHHHHHHHH
Q 039203 114 VVSFFVLYYL 123 (125)
Q Consensus 114 vviflvly~l 123 (125)
++++++++++
T Consensus 287 ~L~l~ii~ll 296 (305)
T KOG0809|consen 287 MLTLLIIALL 296 (305)
T ss_pred HHHHHHHHHH
Confidence 6565555554
No 258
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=27.31 E-value=2.6e+02 Score=21.77 Aligned_cols=20 Identities=5% Similarity=-0.041 Sum_probs=14.4
Q ss_pred chhHHhHHHHHHHHHHHHHH
Q 039203 35 GIDEHDNDKAIDGLKERAVF 54 (125)
Q Consensus 35 ~~le~eqD~~Ld~L~~~V~~ 54 (125)
+..+.+|+..++.+.+-+..
T Consensus 93 ~~v~~QQ~~~f~kiRsel~S 112 (220)
T KOG3156|consen 93 EKVSYQQKVDFAKIRSELVS 112 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55667888888887776654
No 259
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=27.08 E-value=4.8e+02 Score=23.72 Aligned_cols=61 Identities=15% Similarity=0.237 Sum_probs=29.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhHHHhhhhhhhhHHHHHHHHHH
Q 039203 39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRM-------GNSMDASRGIMSGTMDRFKMVFE 99 (125)
Q Consensus 39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l-------~~~~d~t~~~L~~t~~rl~~v~~ 99 (125)
..++..-+++...|..|+.....=.+|+.+=.+-++.+ .+.++.+..+=+.-++|++.+++
T Consensus 554 ~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~ 621 (717)
T PF10168_consen 554 EKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQ 621 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666667776666665554333433333333333 33333333444444445555544
No 260
>PF14227 UBN2_2: gag-polypeptide of LTR copia-type
Probab=27.02 E-value=86 Score=20.79 Aligned_cols=48 Identities=21% Similarity=0.113 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhh
Q 039203 41 NDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSG 89 (125)
Q Consensus 41 qD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~ 89 (125)
-.+++..+..-+++|+.++..|.+|..-.- +|..|-..++.....|..
T Consensus 41 v~~hi~~~~~l~~~L~~~g~~i~d~~~~~~-lL~sLP~sy~~~~~~l~~ 88 (119)
T PF14227_consen 41 VRDHINEFRSLVNQLKSLGVPIDDEDKVII-LLSSLPPSYDSFVTALLY 88 (119)
T ss_pred HHHHHHHHHHHHHhhccccccchHHHHHHH-HHHcCCHhHHHHHHHHHc
Confidence 346899999999999999999999966444 899999888887765433
No 261
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=26.96 E-value=2.1e+02 Score=19.78 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhh---hhhhhHHHHHHHHHH
Q 039203 59 TGDIHEEVESHNRLLDRMGNSMDASR---GIMSGTMDRFKMVFE 99 (125)
Q Consensus 59 a~~I~~El~~Qn~lLD~l~~~~d~t~---~~L~~t~~rl~~v~~ 99 (125)
|.-|..-++.||. ||+|...+|++. -+|+..++-+...++
T Consensus 59 aRlItQVLELQnT-LdDLSqRVdsVKEEnLKLrSENQVLGQYIe 101 (120)
T KOG3650|consen 59 ARLITQVLELQNT-LDDLSQRVDSVKEENLKLRSENQVLGQYIE 101 (120)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 4567777888884 888888888775 466666666665544
No 262
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=26.74 E-value=1.5e+02 Score=22.38 Aligned_cols=20 Identities=30% Similarity=0.343 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 039203 43 KAIDGLKERAVFLKRLTGDI 62 (125)
Q Consensus 43 ~~Ld~L~~~V~~LK~ia~~I 62 (125)
+.++.|..+...||.+-..|
T Consensus 108 ev~~aLk~g~~aLK~~~k~~ 127 (191)
T PTZ00446 108 IAVNALSYAANTHKKLNNEI 127 (191)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 34566666666666655444
No 263
>COG1766 fliF Flagellar basal body M-ring protein [Cell motility and secretion]
Probab=26.68 E-value=38 Score=29.70 Aligned_cols=20 Identities=30% Similarity=0.605 Sum_probs=12.0
Q ss_pred eehHHHHHHHHHHHHHHHhC
Q 039203 106 ICTLVGSFVVSFFVLYYLIR 125 (125)
Q Consensus 106 ~~~lI~~lvviflvly~l~k 125 (125)
+++.+.+.+++|+++|+++|
T Consensus 444 ~~~~~~~~l~~~lv~~~~~r 463 (545)
T COG1766 444 SLIPVALYLVVFLVLFIIVR 463 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555666677776653
No 264
>PF11466 Doppel: Prion-like protein Doppel; InterPro: IPR021566 Dpl is a homologue related to the prion protein (PrP). Dpl is toxic to neurons and is expressed in the brains of mice that do not express PrP. In DHPC and SDS micelles, Dpl shoes about 40% alpha-helical structure however in aqueous solution it consists of a random coil. The alpha helical segment can adopt a transmembrane localisation also in a membrane. The unprocessed Dpl protein is thought to posses a possible channel formation mechanism which may be related to toxicity through direct interaction with cell membranes and damage to the cell membrane. ; PDB: 1Z65_A.
Probab=26.50 E-value=51 Score=17.65 Aligned_cols=12 Identities=25% Similarity=-0.028 Sum_probs=6.3
Q ss_pred eehHHHHHHHHH
Q 039203 106 ICTLVGSFVVSF 117 (125)
Q Consensus 106 ~~~lI~~lvvif 117 (125)
.|++.++++++|
T Consensus 7 ~~~lAi~c~LL~ 18 (30)
T PF11466_consen 7 GWWLAIVCVLLF 18 (30)
T ss_dssp SHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 566555555443
No 265
>PF05366 Sarcolipin: Sarcolipin; InterPro: IPR008028 Sarcolipin is a 31 amino acid integral membrane protein that regulates Ca-ATPase activity in skeletal muscle [].; GO: 0030234 enzyme regulator activity, 0016020 membrane; PDB: 1JDM_A.
Probab=26.37 E-value=1.1e+02 Score=16.19 Aligned_cols=7 Identities=14% Similarity=0.800 Sum_probs=3.4
Q ss_pred HHHHHHh
Q 039203 118 FVLYYLI 124 (125)
Q Consensus 118 lvly~l~ 124 (125)
+++|.++
T Consensus 20 ilmwllv 26 (31)
T PF05366_consen 20 ILMWLLV 26 (31)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 4455554
No 266
>KOG2861 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.20 E-value=1.6e+02 Score=25.01 Aligned_cols=21 Identities=24% Similarity=0.109 Sum_probs=12.4
Q ss_pred chhHHhHHHHHHHHHHHHHHH
Q 039203 35 GIDEHDNDKAIDGLKERAVFL 55 (125)
Q Consensus 35 ~~le~eqD~~Ld~L~~~V~~L 55 (125)
...|+.-|..++.....-..|
T Consensus 259 ~~~E~~vd~~I~s~~~ipe~l 279 (399)
T KOG2861|consen 259 SYFESLVDKTIESTTDIPESL 279 (399)
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 455666666666665544443
No 267
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=26.19 E-value=75 Score=21.38 Aligned_cols=15 Identities=13% Similarity=0.166 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 039203 109 LVGSFVVSFFVLYYL 123 (125)
Q Consensus 109 lI~~lvviflvly~l 123 (125)
++++.|+++.++|.+
T Consensus 43 ~~lvaVg~~YL~y~~ 57 (91)
T PF01708_consen 43 FTLVAVGCLYLAYTW 57 (91)
T ss_pred hHHHHHHHHHHHHHH
Confidence 344445566666654
No 268
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=26.01 E-value=2.7e+02 Score=20.41 Aligned_cols=51 Identities=18% Similarity=0.277 Sum_probs=22.5
Q ss_pred HHHHhhhHHHhhhhhhhhHHHHHHHHHHhcCCcceehHHHHHHHHHHHHHH
Q 039203 72 LLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLVGSFVVSFFVLYY 122 (125)
Q Consensus 72 lLD~l~~~~d~t~~~L~~t~~rl~~v~~~~~~~~~~~lI~~lvviflvly~ 122 (125)
.|-++...+.++-+.+-....|++.++.=+.-+-.++.+++++++.+++|+
T Consensus 63 rlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avvly~ 113 (156)
T PF08372_consen 63 RLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVVLYF 113 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555555555422222233333334443344443
No 269
>PRK09039 hypothetical protein; Validated
Probab=26.00 E-value=3.6e+02 Score=21.95 Aligned_cols=57 Identities=5% Similarity=0.063 Sum_probs=46.7
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHH
Q 039203 37 DEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDR 93 (125)
Q Consensus 37 le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~r 93 (125)
...+.-..+..|.+.+..||..=-.|..+|+..+.-..+....++....+|+.+..+
T Consensus 131 ~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 131 VSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666678888888999998888899999988888888888888888888888633
No 270
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=25.76 E-value=47 Score=23.48 Aligned_cols=7 Identities=14% Similarity=0.429 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 039203 116 SFFVLYY 122 (125)
Q Consensus 116 iflvly~ 122 (125)
+++++|+
T Consensus 34 ~~~~~~~ 40 (146)
T PF14316_consen 34 LILLLWR 40 (146)
T ss_pred HHHHHHH
Confidence 3344443
No 271
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=25.48 E-value=1.7e+02 Score=17.85 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039203 44 AIDGLKERAVFLKRLTGDIHEEVE 67 (125)
Q Consensus 44 ~Ld~L~~~V~~LK~ia~~I~~El~ 67 (125)
.+..++.++.++|.--.+|.++++
T Consensus 8 ~~~~~~~~i~tvk~en~~i~~~ve 31 (55)
T PF05377_consen 8 ELPRIESSINTVKKENEEISESVE 31 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555444444444444443
No 272
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=25.41 E-value=3.1e+02 Score=20.86 Aligned_cols=22 Identities=0% Similarity=0.083 Sum_probs=10.0
Q ss_pred hhHHHhhhhhhhhHHHHHHHHH
Q 039203 77 GNSMDASRGIMSGTMDRFKMVF 98 (125)
Q Consensus 77 ~~~~d~t~~~L~~t~~rl~~v~ 98 (125)
..++.....+|...-.++.+++
T Consensus 113 ~~~v~~~~q~~~~l~~K~D~~L 134 (189)
T TIGR02132 113 KKDVTKLKQDIKSLDKKLDKIL 134 (189)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444
No 273
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=25.39 E-value=3e+02 Score=22.38 Aligned_cols=31 Identities=13% Similarity=0.194 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039203 46 DGLKERAVFLKRLTGDIHEEVESHNRLLDRM 76 (125)
Q Consensus 46 d~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l 76 (125)
+-+.+.|..+-..+..|+.+|.+|..++.+.
T Consensus 51 ~~i~~~l~~f~~~S~~igg~V~~~a~~v~~a 81 (312)
T PF01213_consen 51 ELINGPLKPFVELSKKIGGDVAEQAQLVKKA 81 (312)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3478999999999999999999998877654
No 274
>COG2857 CYT1 Cytochrome c1 [Energy production and conversion]
Probab=24.95 E-value=96 Score=24.25 Aligned_cols=11 Identities=18% Similarity=0.087 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 039203 58 LTGDIHEEVES 68 (125)
Q Consensus 58 ia~~I~~El~~ 68 (125)
.+..|.+.+..
T Consensus 175 ~~~~i~~p~~~ 185 (250)
T COG2857 175 LGIFIADPLKD 185 (250)
T ss_pred HhhhccCcccc
Confidence 34445554444
No 275
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=24.70 E-value=2.6e+02 Score=19.90 Aligned_cols=56 Identities=11% Similarity=0.213 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHH
Q 039203 42 DKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMV 97 (125)
Q Consensus 42 D~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v 97 (125)
.+.+..+...+..+.....+|.+-+++|..-+.++...+.........+...+..+
T Consensus 134 ~~~l~~i~~~~~~i~~~i~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~~~ 189 (213)
T PF00015_consen 134 SESLEEIAESVEEISDSIEEISESAEEQSESIEQINESIEEISEISEQISASSEEI 189 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555555555544444444444443333
No 276
>PRK09731 putative general secretion pathway protein YghD; Provisional
Probab=24.70 E-value=70 Score=23.99 Aligned_cols=19 Identities=21% Similarity=0.086 Sum_probs=11.0
Q ss_pred eehHHHHHHHHHHHHHHHh
Q 039203 106 ICTLVGSFVVSFFVLYYLI 124 (125)
Q Consensus 106 ~~~lI~~lvviflvly~l~ 124 (125)
.+..+|.++++++++|+.+
T Consensus 38 ~ll~~~g~vL~l~i~Y~~i 56 (178)
T PRK09731 38 GMLLAAVVFLFSVGYYVLI 56 (178)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444556666666667654
No 277
>PF14018 DUF4234: Domain of unknown function (DUF4234)
Probab=24.65 E-value=1e+02 Score=19.03 Aligned_cols=10 Identities=0% Similarity=0.109 Sum_probs=4.9
Q ss_pred HHHHHHHHHh
Q 039203 91 MDRFKMVFEK 100 (125)
Q Consensus 91 ~~rl~~v~~~ 100 (125)
.+.++.+.++
T Consensus 26 ~~~~~~~~~~ 35 (75)
T PF14018_consen 26 WKELNQLTGR 35 (75)
T ss_pred HHHHHHHhcC
Confidence 3445555444
No 278
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=24.64 E-value=4.3e+02 Score=23.45 Aligned_cols=43 Identities=14% Similarity=0.207 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHhhh--HHHhhhhhhhhHHHHHHHHHHhc
Q 039203 59 TGDIHEEVESHNRLLDRMGN--SMDASRGIMSGTMDRFKMVFEKK 101 (125)
Q Consensus 59 a~~I~~El~~Qn~lLD~l~~--~~d~t~~~L~~t~~rl~~v~~~~ 101 (125)
--.+.|....|-+||--|++ ..|-++..|++--.|+++.++.+
T Consensus 413 ~d~~~d~wsynaELlVlleN~~tld~~Ds~~~~L~ekvk~qL~~n 457 (550)
T PF00509_consen 413 DDKIADVWSYNAELLVLLENQRTLDLHDSNVNNLYEKVKRQLREN 457 (550)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTG
T ss_pred hccchhhhcccHHHHHHhccccchhhhHHHHHHHHHHHHHHHhcc
Confidence 33445667778888887765 57889999999999999998863
No 279
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=24.60 E-value=1.1e+02 Score=26.85 Aligned_cols=10 Identities=20% Similarity=0.155 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 039203 90 TMDRFKMVFE 99 (125)
Q Consensus 90 t~~rl~~v~~ 99 (125)
....++..+.
T Consensus 465 ~~~~Lk~s~p 474 (538)
T PF05781_consen 465 WASYLKTSFP 474 (538)
T ss_pred HHHHHHHHHH
Confidence 3333444443
No 280
>PRK10404 hypothetical protein; Provisional
Probab=24.50 E-value=2.3e+02 Score=19.10 Aligned_cols=49 Identities=14% Similarity=0.144 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHhhhhhhhh
Q 039203 41 NDKAIDGLKERAVFLKRLTGDIHEEVESHNR-LLDRMGNSMDASRGIMSG 89 (125)
Q Consensus 41 qD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~-lLD~l~~~~d~t~~~L~~ 89 (125)
.++..++|..-+..+..+...-.++..++-. +=+.++..++.+..++..
T Consensus 7 ~~~l~~dl~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~ 56 (101)
T PRK10404 7 DTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQ 56 (101)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433322 333444444444444443
No 281
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=24.32 E-value=3.1e+02 Score=20.57 Aligned_cols=58 Identities=17% Similarity=0.313 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHH
Q 039203 40 DNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMV 97 (125)
Q Consensus 40 eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v 97 (125)
+.|..+..|..++..|+.-+..+..+-+.=..-+..+....+.....+.++--++..+
T Consensus 128 ~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 128 ELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSV 185 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666555555444444443333444444444444444444444444433
No 282
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=24.03 E-value=3.2e+02 Score=20.59 Aligned_cols=55 Identities=7% Similarity=0.193 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHH
Q 039203 43 KAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMV 97 (125)
Q Consensus 43 ~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v 97 (125)
..+......+.....++..-..|+.++..||+.-...++.....|.....-+.+.
T Consensus 116 ~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~t 170 (188)
T PF05335_consen 116 AALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKT 170 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666778888888888888888888888888888877777766665
No 283
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=23.99 E-value=2.1e+02 Score=23.18 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=26.1
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039203 37 DEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNR 71 (125)
Q Consensus 37 le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~ 71 (125)
||.|.|+. +.|..+|++||.=|.++..|+.-+.+
T Consensus 152 LESELdEk-e~llesvqRLkdEardlrqelavr~k 185 (333)
T KOG1853|consen 152 LESELDEK-EVLLESVQRLKDEARDLRQELAVRTK 185 (333)
T ss_pred HHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455533 45778999999999999999988774
No 284
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=23.90 E-value=78 Score=18.50 Aligned_cols=13 Identities=8% Similarity=0.023 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 039203 111 GSFVVSFFVLYYL 123 (125)
Q Consensus 111 ~~lvviflvly~l 123 (125)
++++++.+++|.+
T Consensus 19 ~~~~Figiv~wa~ 31 (48)
T cd01324 19 LALFFLGVVVWAF 31 (48)
T ss_pred HHHHHHHHHHHHh
Confidence 3344455555544
No 285
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=23.76 E-value=2.4e+02 Score=18.99 Aligned_cols=55 Identities=13% Similarity=0.328 Sum_probs=28.4
Q ss_pred HhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh
Q 039203 39 HDNDKAIDGLKERAVFL--KRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK 100 (125)
Q Consensus 39 ~eqD~~Ld~L~~~V~~L--K~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~ 100 (125)
.++|.+++.+..++..| +.=-..+. -.|.++...+..+..+++.....+..++++
T Consensus 45 ~~~~~Rl~~lE~~l~~LPt~~dv~~L~-------l~l~el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 45 DEHDRRLQALETKLEHLPTRDDVHDLQ-------LELAELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666655554 33333333 344555555555555555555555555543
No 286
>PF03408 Foamy_virus_ENV: Foamy virus envelope protein ; InterPro: IPR005070 Expression of the envelope (Env) glycoprotein is essential for viral particle egress. This feature is unique to the Spumavirinae, a subclass of the Retroviridae. ; GO: 0019031 viral envelope
Probab=23.70 E-value=2.8e+02 Score=25.96 Aligned_cols=17 Identities=0% Similarity=-0.046 Sum_probs=9.6
Q ss_pred hhhhhHHHHHHHHHHhc
Q 039203 85 GIMSGTMDRFKMVFEKK 101 (125)
Q Consensus 85 ~~L~~t~~rl~~v~~~~ 101 (125)
-...++.+++..++...
T Consensus 920 PaaA~~~~~iGnfL~~t 936 (981)
T PF03408_consen 920 PAAASFLSGIGNFLSGT 936 (981)
T ss_pred HHHHHHHHHHHHHhhhc
Confidence 34445556666666653
No 287
>COG1422 Predicted membrane protein [Function unknown]
Probab=23.69 E-value=3.4e+02 Score=20.83 Aligned_cols=22 Identities=9% Similarity=0.063 Sum_probs=14.6
Q ss_pred CcceehHHHHHHHHHHHHHHHh
Q 039203 103 NRRICTLVGSFVVSFFVLYYLI 124 (125)
Q Consensus 103 ~~~~~~lI~~lvviflvly~l~ 124 (125)
.+.+.++.+..+.+|..+++.+
T Consensus 122 fkPM~~~~v~tI~~F~Wl~~~~ 143 (201)
T COG1422 122 FKPMLYISVLTIPFFAWLRWFV 143 (201)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 4566676666677777777654
No 288
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=23.48 E-value=1.2e+02 Score=17.98 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 039203 109 LVGSFVVSFFVLYYL 123 (125)
Q Consensus 109 lI~~lvviflvly~l 123 (125)
+|++++++ +++|.+
T Consensus 9 li~iv~~C-l~lyl~ 22 (47)
T PRK10299 9 LVVVVLAC-LLLWAQ 22 (47)
T ss_pred HHHHHHHH-HHHHHH
Confidence 33333343 336653
No 289
>PTZ00464 SNF-7-like protein; Provisional
Probab=23.42 E-value=2.2e+02 Score=21.78 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039203 44 AIDGLKERAVFLKRLTGDI 62 (125)
Q Consensus 44 ~Ld~L~~~V~~LK~ia~~I 62 (125)
.++.|..+...||.+-..|
T Consensus 103 vv~amk~g~kaLK~~~k~i 121 (211)
T PTZ00464 103 QVDAMKQAAKTLKKQFKKL 121 (211)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 3455555555555554443
No 290
>PRK00708 sec-independent translocase; Provisional
Probab=23.41 E-value=3.5e+02 Score=20.85 Aligned_cols=41 Identities=10% Similarity=0.315 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHHh
Q 039203 42 DKAIDGLKERAVFLKRLTGDIHEEVESHNRL--LDRMGNSMDA 82 (125)
Q Consensus 42 D~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~l--LD~l~~~~d~ 82 (125)
=+..-.+...|..+|.++.+..+++++.... ||++...+..
T Consensus 26 P~~~R~lGk~v~k~R~~a~e~r~~~~e~~~~~eldd~~k~~~~ 68 (209)
T PRK00708 26 PPMLRAFGKMTARMRKMAGEFRRQFDEALREAELDDVRQTISD 68 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 3456678888888999888888888775442 5666554443
No 291
>PF13106 DUF3961: Domain of unknown function (DUF3961)
Probab=23.18 E-value=1.1e+02 Score=17.42 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=13.4
Q ss_pred cCCcceehH-HHHHHHHHHHHHHHh
Q 039203 101 KSNRRICTL-VGSFVVSFFVLYYLI 124 (125)
Q Consensus 101 ~~~~~~~~l-I~~lvviflvly~l~ 124 (125)
.+.+-|.|- ..+.++++++.|++.
T Consensus 13 ~sdqIWFYG~~~ls~~m~~~tylis 37 (40)
T PF13106_consen 13 KSDQIWFYGFFGLSIFMILFTYLIS 37 (40)
T ss_pred ccccEEEeeHHHHHHHHHHHHHHHh
Confidence 345556663 344455666677664
No 292
>PF11315 Med30: Mediator complex subunit 30; InterPro: IPR021019 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med30 is a metazoan-specific subunit of Mediator [], having no homologues in yeasts.
Probab=23.00 E-value=3.1e+02 Score=20.03 Aligned_cols=39 Identities=15% Similarity=0.211 Sum_probs=30.8
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039203 35 GIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLL 73 (125)
Q Consensus 35 ~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lL 73 (125)
..+.+|..+.++.+..+-..||.+=-.+..=+-+=|.||
T Consensus 107 ~~~~~er~el~e~v~~KN~qLk~iid~lR~~iweIN~ml 145 (150)
T PF11315_consen 107 RQLLEERKELIEQVKQKNQQLKEIIDQLRNIIWEINTML 145 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557788888888888888888888777777666666665
No 293
>PRK01371 sec-independent translocase; Provisional
Probab=22.99 E-value=3e+02 Score=19.84 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039203 43 KAIDGLKERAVFLKRLTGDIHEEVESH 69 (125)
Q Consensus 43 ~~Ld~L~~~V~~LK~ia~~I~~El~~Q 69 (125)
+..-.+...+..+|..+.+..+++++.
T Consensus 27 ~~ar~lg~~ir~~R~~~~~ak~~i~~E 53 (137)
T PRK01371 27 KAARDAGRTLRQLREMANNARNDLRSE 53 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888776666666543
No 294
>PRK11901 hypothetical protein; Reviewed
Probab=22.78 E-value=80 Score=26.01 Aligned_cols=16 Identities=13% Similarity=0.420 Sum_probs=7.2
Q ss_pred ceehHHHHHHHHHHHH
Q 039203 105 RICTLVGSFVVSFFVL 120 (125)
Q Consensus 105 ~~~~lI~~lvviflvl 120 (125)
|+++-|.++|+++|||
T Consensus 37 h~MiGiGilVLlLLIi 52 (327)
T PRK11901 37 HMMIGIGILVLLLLII 52 (327)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 295
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=22.75 E-value=2.2e+02 Score=18.16 Aligned_cols=40 Identities=18% Similarity=0.378 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhHHHhhh
Q 039203 45 IDGLKERAVFLK----RLTGDIHEEVESHNRLLDRMGNSMDASR 84 (125)
Q Consensus 45 Ld~L~~~V~~LK----~ia~~I~~El~~Qn~lLD~l~~~~d~t~ 84 (125)
++++...+..+. .+..++.+=+...|.++++++...++++
T Consensus 28 l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~ 71 (90)
T PF06103_consen 28 LDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVD 71 (90)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 444444444433 3334444445556666666666555544
No 296
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=22.68 E-value=1.4e+02 Score=24.42 Aligned_cols=13 Identities=8% Similarity=0.028 Sum_probs=6.6
Q ss_pred hhhhhHHHHHHHH
Q 039203 85 GIMSGTMDRFKMV 97 (125)
Q Consensus 85 ~~L~~t~~rl~~v 97 (125)
++|..+.+++...
T Consensus 137 G~L~~~l~~la~~ 149 (399)
T PRK10573 137 GKLDECCFQLARQ 149 (399)
T ss_pred CCHHHHHHHHHHH
Confidence 4555555555444
No 297
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=22.56 E-value=1.6e+02 Score=18.41 Aligned_cols=44 Identities=23% Similarity=0.161 Sum_probs=22.9
Q ss_pred ccCCCCCCCCCCCCCCCCCCCcchhHHhHHHHHHHHHHHHHHHH
Q 039203 13 ALFDEYDGLEEGGLKASSSYSSGIDEHDNDKAIDGLKERAVFLK 56 (125)
Q Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~le~eqD~~Ld~L~~~V~~LK 56 (125)
.+||++-.-+-.|.+.+...-+-.=-.|.++.+-.|.+-+.+||
T Consensus 2 ~~fded~~kka~~~~i~~d~LsllsV~El~eRIalLq~EIeRlk 45 (65)
T COG5509 2 AMFDEDAEKKAFGHEIGNDALSLLSVAELEERIALLQAEIERLK 45 (65)
T ss_pred CcccccccccccccccchhHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 46775544443333333311001112677777777777777776
No 298
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=22.49 E-value=3e+02 Score=19.81 Aligned_cols=58 Identities=14% Similarity=0.156 Sum_probs=38.3
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHH
Q 039203 37 DEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRF 94 (125)
Q Consensus 37 le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl 94 (125)
++.+-++.++.+..-+..+..-+..+..|++.-...-....+..++...-|...|...
T Consensus 34 i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~~~ 91 (162)
T PF05565_consen 34 IEDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAMEAA 91 (162)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4556666677777777777777777777777766666666666666666665555543
No 299
>PF07432 Hc1: Histone H1-like protein Hc1; InterPro: IPR010886 This family consists of several bacterial histone H1-like Hc1 proteins, which are found in Chlamydiae and Bacteroidetes species. Chlamydiae are prokaryotic obligate intracellular parasites that undergo a biphasic life cycle involving an infectious, extracellular form known as elementary bodies and an intracellular, replicating form termed reticulate bodies. The gene coding for Hc1 is expressed only during the late stages of the chlamydial life cycle concomitant with the reorganisation of chlamydial reticulate bodies into elementary bodies, suggesting that the Hc1 protein plays a role in the condensation of chlamydial chromatin during intracellular differentiation [].; GO: 0003677 DNA binding
Probab=22.37 E-value=2.9e+02 Score=19.52 Aligned_cols=44 Identities=9% Similarity=0.077 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHH
Q 039203 49 KERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFE 99 (125)
Q Consensus 49 ~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~ 99 (125)
.+.+..++++-..|..++ +..+.+---++.+.+.++..|.++++
T Consensus 3 Kdt~~kmkeL~e~~~~D~-------~K~EKGNKAAGtRaRK~sleLeKLaK 46 (123)
T PF07432_consen 3 KDTFKKMKELLESFEADA-------EKAEKGNKAAGTRARKASLELEKLAK 46 (123)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHccchHHHHHHHHHHHHHHHHHH
Confidence 344445555555554444 33556666677788888888887765
No 300
>PRK00965 tetrahydromethanopterin S-methyltransferase subunit B; Provisional
Probab=22.35 E-value=39 Score=22.97 Aligned_cols=29 Identities=28% Similarity=0.406 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhhhhhhhH
Q 039203 62 IHEEVESHNRLLDRMGNSMDASRGIMSGT 90 (125)
Q Consensus 62 I~~El~~Qn~lLD~l~~~~d~t~~~L~~t 90 (125)
|.++++.=.+.-|++.++.|=...-++.-
T Consensus 36 i~E~i~kLe~~addL~nsLdP~~~~l~S~ 64 (96)
T PRK00965 36 IEEEINKLEALADDLENSLDPRNPPLNSY 64 (96)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCChhhcC
Confidence 33444444445555555555555554443
No 301
>COG3190 FliO Flagellar biogenesis protein [Cell motility and secretion]
Probab=22.24 E-value=76 Score=22.92 Aligned_cols=15 Identities=13% Similarity=0.412 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 039203 109 LVGSFVVSFFVLYYL 123 (125)
Q Consensus 109 lI~~lvviflvly~l 123 (125)
+++++.+++++.|.+
T Consensus 31 L~~iL~lil~~~wl~ 45 (137)
T COG3190 31 LILILALILFLAWLV 45 (137)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555554
No 302
>PHA00646 hypothetical protein
Probab=22.09 E-value=1.1e+02 Score=19.13 Aligned_cols=14 Identities=29% Similarity=0.873 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHH
Q 039203 109 LVGSFVVSFFVLYY 122 (125)
Q Consensus 109 lI~~lvviflvly~ 122 (125)
|+++=+++||+.|+
T Consensus 39 MVgIWlvI~Fl~Wf 52 (65)
T PHA00646 39 MVGIWLVILFLTWF 52 (65)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444555555544
No 303
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=21.97 E-value=1.7e+02 Score=16.81 Aligned_cols=33 Identities=15% Similarity=0.241 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHH
Q 039203 65 EVESHNRLLDRMGNSMDASRGIMSGTMDRFKMV 97 (125)
Q Consensus 65 El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v 97 (125)
++++-..+|=.+++++-.|.+.|++-++.+...
T Consensus 5 ~ieelkqll~rle~eirett~sl~ninksidq~ 37 (46)
T PF08181_consen 5 KIEELKQLLWRLENEIRETTDSLRNINKSIDQY 37 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 444555566666666666666666666655544
No 304
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=21.97 E-value=2.5e+02 Score=18.57 Aligned_cols=50 Identities=8% Similarity=0.080 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHhhhhhhhhHHHHHHHHHH
Q 039203 50 ERAVFLKRLTGDIHEEVESH-NRLLDRMGNSMDASRGIMSGTMDRFKMVFE 99 (125)
Q Consensus 50 ~~V~~LK~ia~~I~~El~~Q-n~lLD~l~~~~d~t~~~L~~t~~rl~~v~~ 99 (125)
-....|-+++...++|+-.+ +++.+-|-.-+..+...++.+..-+.+++|
T Consensus 46 ~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 46 YACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence 34456888888888888877 889999999999999999999888888775
No 305
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=21.93 E-value=1e+02 Score=19.19 Aligned_cols=13 Identities=31% Similarity=0.544 Sum_probs=5.4
Q ss_pred ceehHHHHHHHHH
Q 039203 105 RICTLVGSFVVSF 117 (125)
Q Consensus 105 ~~~~lI~~lvvif 117 (125)
.-|.+.+.+++++
T Consensus 30 Rrc~~~v~~v~~~ 42 (60)
T PF06072_consen 30 RRCRLAVAIVFAV 42 (60)
T ss_pred HHHHHHHHHHHHH
Confidence 3455444333333
No 306
>PF03408 Foamy_virus_ENV: Foamy virus envelope protein ; InterPro: IPR005070 Expression of the envelope (Env) glycoprotein is essential for viral particle egress. This feature is unique to the Spumavirinae, a subclass of the Retroviridae. ; GO: 0019031 viral envelope
Probab=21.91 E-value=91 Score=29.01 Aligned_cols=24 Identities=21% Similarity=0.119 Sum_probs=15.0
Q ss_pred HHHHHHHh---cCCcceehHHHHHHHH
Q 039203 93 RFKMVFEK---KSNRRICTLVGSFVVS 116 (125)
Q Consensus 93 rl~~v~~~---~~~~~~~~lI~~lvvi 116 (125)
|++-+.-. .+.|-+||++++++++
T Consensus 46 R~kY~~Y~~CATSTRim~Wilf~cvll 72 (981)
T PF03408_consen 46 RCKYLCYLCCATSTRIMAWILFVCVLL 72 (981)
T ss_pred hHHHHHHHHHcchhHHHHHHHHHHHHH
Confidence 66666543 4566788876666553
No 307
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=21.81 E-value=3.6e+02 Score=20.45 Aligned_cols=59 Identities=19% Similarity=0.280 Sum_probs=46.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhHHHhhhhhhhhHHHHHHHH
Q 039203 39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLL--DRMGNSMDASRGIMSGTMDRFKMV 97 (125)
Q Consensus 39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lL--D~l~~~~d~t~~~L~~t~~rl~~v 97 (125)
+..|..+-.|.++++.|+.-+..+..|++.=..+| .+|.....+...-+..-.+|++.+
T Consensus 82 ~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~ 142 (201)
T KOG4603|consen 82 QVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNI 142 (201)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677899999999999999999999876654 577777777777777777777766
No 308
>COG1963 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.76 E-value=1.5e+02 Score=21.79 Aligned_cols=37 Identities=11% Similarity=0.171 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHH
Q 039203 61 DIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFE 99 (125)
Q Consensus 61 ~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~ 99 (125)
.++...-.|-+.|++|-+++.+ ...+-..++++.++.
T Consensus 91 GVRr~aG~QA~iLN~l~~~~~~--e~~~~~~~~lKellG 127 (153)
T COG1963 91 GVRRSAGVQARILNQLIEELVN--EKKDFDKKRLKELLG 127 (153)
T ss_pred hHHHhccchHHHHHHHHHHHHH--hhccCCHHHHHHHhC
Confidence 3444444566666666666433 333445566887764
No 309
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=21.74 E-value=70 Score=27.57 Aligned_cols=17 Identities=24% Similarity=0.749 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHhC
Q 039203 109 LVGSFVVSFFVLYYLIR 125 (125)
Q Consensus 109 lI~~lvviflvly~l~k 125 (125)
+|+++|..|+++||+++
T Consensus 47 ~iva~vaav~llwwlv~ 63 (531)
T COG3898 47 IIVALVAAVLLLWWLVR 63 (531)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46667777888888764
No 310
>PHA03231 glycoprotein BALF4; Provisional
Probab=21.63 E-value=3e+02 Score=25.61 Aligned_cols=15 Identities=7% Similarity=-0.037 Sum_probs=7.4
Q ss_pred CCCCCCcchhHHhHH
Q 039203 28 ASSSYSSGIDEHDND 42 (125)
Q Consensus 28 ~~~~~~~~~le~eqD 42 (125)
.++.+|=+-+..|+.
T Consensus 626 ~snvfDle~m~ReyN 640 (829)
T PHA03231 626 DSNVFDLEEIFREYN 640 (829)
T ss_pred hcCCcCHHHHHHHHH
Confidence 344454455555554
No 311
>PF05609 LAP1C: Lamina-associated polypeptide 1C (LAP1C); InterPro: IPR008662 This entry contains Rattus norvegicus LAP1C proteins and several uncharacterised highly related sequences from both Mus sp. and humans. Lamina-associated polypeptide 1s (LAP1s), also known as Torsin-1A-interacting protein 1, are type 2 integral membrane proteins with a single membrane-spanning region of the inner nuclear membrane []. LAP1s bind to both A- and B-type lamins and have a putative role in the membrane attachment and assembly of the nuclear lamina [].
Probab=21.61 E-value=73 Score=27.49 Aligned_cols=17 Identities=18% Similarity=0.075 Sum_probs=7.9
Q ss_pred eehHHHHHHHHHHHHHH
Q 039203 106 ICTLVGSFVVSFFVLYY 122 (125)
Q Consensus 106 ~~~lI~~lvviflvly~ 122 (125)
+|++|+++++++.++++
T Consensus 220 ~w~li~v~~l~~~~~~~ 236 (465)
T PF05609_consen 220 FWLLILVAVLASGFLSF 236 (465)
T ss_pred chhhHHHHHHHHHHHhh
Confidence 44455555554443333
No 312
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=21.60 E-value=5.2e+02 Score=22.14 Aligned_cols=49 Identities=10% Similarity=0.253 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhh
Q 039203 41 NDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSG 89 (125)
Q Consensus 41 qD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~ 89 (125)
-.+.++.+...+.........|..-+++|..-.+++...++........
T Consensus 438 ~~~~~~~i~~~~~~~~~~~~~i~~~~~eq~~~~~~i~~~i~~i~~~~~~ 486 (554)
T PRK15041 438 AGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQ 486 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666666677777777777777666666555444333
No 313
>PF05434 Tmemb_9: TMEM9; InterPro: IPR008853 This family contains several eukaryotic transmembrane proteins which are homologous to Homo sapiens transmembrane protein 9 Q9P0T7 from SWISSPROT. The TMEM9 gene encodes a 183 amino-acid protein that contains an N-terminal signal peptide, a single transmembrane region, three potential N-glycosylation sites and three conserved cys-rich domains in the N terminus, but no known functional domains. The protein is highly conserved between species from Caenorhabditis elegans to H. sapiens and belongs to a novel family of transmembrane proteins. The exact function of TMEM9 is unknown although it has been found to be widely expressed and localised to the late endosomes and lysosomes []. Members of this family contain CXCXC repeats IPR004153 from INTERPRO in their N-terminal region.; GO: 0016021 integral to membrane
Probab=21.52 E-value=49 Score=24.24 Aligned_cols=10 Identities=50% Similarity=0.996 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q 039203 114 VVSFFVLYYL 123 (125)
Q Consensus 114 vviflvly~l 123 (125)
|+.+|++|++
T Consensus 64 Vi~lLvlYM~ 73 (149)
T PF05434_consen 64 VIGLLVLYML 73 (149)
T ss_pred HHHHHHHHHH
Confidence 4444555554
No 314
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=21.52 E-value=6.2e+02 Score=23.03 Aligned_cols=46 Identities=13% Similarity=0.202 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh
Q 039203 55 LKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK 100 (125)
Q Consensus 55 LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~ 100 (125)
+..-...+..+.+.|-+-|+++.+..+.....-++...|++.+.++
T Consensus 563 i~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~ 608 (717)
T PF10168_consen 563 IQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDK 608 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555667777777777778877777766666666666666543
No 315
>PRK04406 hypothetical protein; Provisional
Probab=21.38 E-value=2.3e+02 Score=18.02 Aligned_cols=39 Identities=10% Similarity=0.339 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHH
Q 039203 60 GDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVF 98 (125)
Q Consensus 60 ~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~ 98 (125)
.++..-+.-|.+.+++|++.+..-...+..-.+.+..+.
T Consensus 14 ~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~ 52 (75)
T PRK04406 14 NDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVV 52 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667778888888888777766655555555553
No 316
>TIGR01410 tatB twin arginine-targeting protein translocase TatB. This model represents the TatB protein of a Sec-independent system for transporting folded proteins, often with a bound redox cofactor, across the bacterial inner membrane. TatC is the multiple membrane spanning component. TatB, like the related TatA/E proteins, appears to span the membrane one time. The tat system recognizes proteins with an elongated signal sequence containing a conserved R-R in a motif approximated by RRxFLK N-terminal to the transmembrane helix. TIGRFAMs model TIGR01409 describes this twin-Arg signal sequence. A similar system, termed Delta-pH-dependent transport, operates on chloroplast-encoded proteins.
Probab=21.33 E-value=2.4e+02 Score=18.14 Aligned_cols=39 Identities=13% Similarity=0.281 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Q 039203 43 KAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDA 82 (125)
Q Consensus 43 ~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~ 82 (125)
+..-.+...+..+|..+.++.+|+++.-. .+++.+....
T Consensus 26 ~~~r~~G~~i~~~r~~~~~~~~~~~~e~~-~~el~~~~~~ 64 (80)
T TIGR01410 26 VAIRAVGKFVRRLRGMASDVKNELDEELK-AQELDEQLKK 64 (80)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHhc-hHhHHHHHHH
Confidence 34567788888899999999998877665 5666555543
No 317
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=21.33 E-value=4.3e+02 Score=21.09 Aligned_cols=55 Identities=9% Similarity=0.090 Sum_probs=34.2
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhh
Q 039203 35 GIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSG 89 (125)
Q Consensus 35 ~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~ 89 (125)
+.+.+.=....+.+...-..|..+-.+++.|++.+-+-++.+-..+.....++..
T Consensus 130 ~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~lN~~I~~ 184 (322)
T TIGR02492 130 QAVLESAQALANSFNQTSNELQDLRKGINAEIKSAVTEINSLLKQIASLNKEIQQ 184 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555556666666666677777777777777766666655555555555543
No 318
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=21.03 E-value=3.4e+02 Score=19.77 Aligned_cols=15 Identities=7% Similarity=-0.006 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 039203 47 GLKERAVFLKRLTGD 61 (125)
Q Consensus 47 ~L~~~V~~LK~ia~~ 61 (125)
.+...+......+..
T Consensus 43 ~~~~~~~~v~~~~~~ 57 (262)
T smart00283 43 EIAATAQSAAEAAEE 57 (262)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 319
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=20.99 E-value=1.1e+02 Score=17.86 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=11.7
Q ss_pred cceehHHHHHHHHHHHHHHHh
Q 039203 104 RRICTLVGSFVVSFFVLYYLI 124 (125)
Q Consensus 104 ~~~~~lI~~lvviflvly~l~ 124 (125)
..++.++++++.+..-+|.++
T Consensus 31 ~p~~~~~g~llG~~~g~~~~~ 51 (55)
T PF09527_consen 31 SPWFTLIGLLLGIAAGFYNVY 51 (55)
T ss_pred ChHHHHHHHHHHHHHHHHHHH
Confidence 356666666655555555544
No 320
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=20.91 E-value=78 Score=18.10 Aligned_cols=16 Identities=13% Similarity=0.197 Sum_probs=7.7
Q ss_pred ehHHHHHHHHHHHHHH
Q 039203 107 CTLVGSFVVSFFVLYY 122 (125)
Q Consensus 107 ~~lI~~lvviflvly~ 122 (125)
+|.+.+++++.++++.
T Consensus 10 sYg~t~~~l~~l~~~~ 25 (46)
T PF04995_consen 10 SYGVTALVLAGLIVWS 25 (46)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555554444443
No 321
>PF06837 Fijivirus_P9-2: Fijivirus P9-2 protein; InterPro: IPR009650 This family consists of several Fijivirus specific P9-2 proteins from Rice black streaked dwarf virus (RBSDV) and Fiji disease virus. The function of this family is unknown.
Probab=20.78 E-value=3e+02 Score=21.13 Aligned_cols=17 Identities=6% Similarity=0.147 Sum_probs=8.9
Q ss_pred HHhhhHHHhhhhhhhhH
Q 039203 74 DRMGNSMDASRGIMSGT 90 (125)
Q Consensus 74 D~l~~~~d~t~~~L~~t 90 (125)
.++++.+|.....+..+
T Consensus 49 se~Dd~vd~lE~~ve~~ 65 (214)
T PF06837_consen 49 SELDDKVDKLETDVEDK 65 (214)
T ss_pred hhHHHHHHHHhhhHHhC
Confidence 34555666555554433
No 322
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=20.65 E-value=33 Score=25.97 Aligned_cols=8 Identities=0% Similarity=-0.031 Sum_probs=0.0
Q ss_pred ehHHHHHH
Q 039203 107 CTLVGSFV 114 (125)
Q Consensus 107 ~~lI~~lv 114 (125)
||+++++|
T Consensus 38 Wyil~~~I 45 (190)
T PF06936_consen 38 WYILFGCI 45 (190)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 44343333
No 323
>PHA00547 hypothetical protein
Probab=20.49 E-value=82 Score=25.75 Aligned_cols=19 Identities=5% Similarity=0.217 Sum_probs=9.4
Q ss_pred eehHHHHHHHHHHHHHHHh
Q 039203 106 ICTLVGSFVVSFFVLYYLI 124 (125)
Q Consensus 106 ~~~lI~~lvviflvly~l~ 124 (125)
...+|+|++++++.+|+++
T Consensus 38 iifiIFfv~~~IyfIw~ff 56 (337)
T PHA00547 38 LVFWILFALQCIYFVWWLW 56 (337)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3344555555555555544
No 324
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=20.22 E-value=3.8e+02 Score=22.03 Aligned_cols=19 Identities=16% Similarity=0.349 Sum_probs=8.4
Q ss_pred HHHHHHHhhhHHHhhhhhh
Q 039203 69 HNRLLDRMGNSMDASRGIM 87 (125)
Q Consensus 69 Qn~lLD~l~~~~d~t~~~L 87 (125)
|..||..|+..-.+...++
T Consensus 155 ~~~Ll~kL~~~k~Kl~kkl 173 (336)
T PF05055_consen 155 QSSLLEKLDSRKKKLRKKL 173 (336)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555544444433333
No 325
>PF02167 Cytochrom_C1: Cytochrome C1 family; InterPro: IPR002326 Cytochrome bc1 complex (ubiquinol:ferricytochrome c oxidoreductase) is found in mitochondria, photosynthetic bacteria and other prokaryotes. It is minimally composed of three subunits: cytochrome b, carrying a low- and a high-potential haem group; cytochrome c1 (cyt c1); and a high-potential Rieske iron-sulphur protein. The general function of the complex is electron transfer between two mobile redox carriers, ubiquinol and cytochrome c; the electron transfer is coupled with proton translocation across the membrane, thus generating proton-motive force in the form of an electrochemical potential that can drive ATP synthesis. In its structure and functions, the cytochrome bc1 complex bears extensive analogy to the cytochrome b6f complex of chloroplasts and cyanobacteria; cyt c1 plays an analogous role to cytochrome f, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1P84_D 2IBZ_D 1EZV_D 3CX5_O 3CXH_O 1KB9_D 1KYO_D 1ZRT_Q 2CA4_B 2C9X_B ....
Probab=20.21 E-value=76 Score=24.54 Aligned_cols=17 Identities=18% Similarity=0.415 Sum_probs=8.4
Q ss_pred ehHHHHHHHHHHHHHHH
Q 039203 107 CTLVGSFVVSFFVLYYL 123 (125)
Q Consensus 107 ~~lI~~lvviflvly~l 123 (125)
+++++|+++++++.|++
T Consensus 195 ~~vl~fL~il~~l~y~~ 211 (219)
T PF02167_consen 195 LKVLGFLLILTVLAYLL 211 (219)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33455555544555554
Done!