Query 039203
Match_columns 125
No_of_seqs 117 out of 816
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 12:07:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039203.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039203hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nps_D Syntaxin-6; vesicle fus 99.8 5.3E-19 1.8E-23 115.9 7.6 71 35-105 11-81 (82)
2 1sfc_D Protein (SNAP-25B), pro 99.8 4.1E-18 1.4E-22 112.9 8.9 78 21-100 9-86 (87)
3 1gl2_D Syntaxin 8, vesicle tra 99.7 4.3E-18 1.5E-22 107.0 6.8 64 36-99 2-65 (65)
4 1n7s_D SNAP-25A; neuronal snar 99.7 8E-18 2.7E-22 106.0 7.5 64 35-98 2-65 (66)
5 1l4a_D S-SNAP25 fusion protein 99.7 1E-16 3.5E-21 106.2 8.0 65 35-99 22-86 (87)
6 3b5n_D Protein transport prote 99.6 1.2E-14 4.2E-19 91.1 7.8 63 35-97 2-64 (64)
7 3hd7_B Syntaxin-1A; membrane p 99.1 1.1E-09 3.6E-14 74.9 9.9 73 38-110 16-90 (109)
8 1jth_B Syntaxin 1A; coiled-coi 98.0 6.9E-05 2.4E-09 47.7 9.3 62 39-100 6-67 (77)
9 2nps_B Syntaxin 13, vesicle-as 97.6 0.00048 1.6E-08 43.1 8.6 60 41-100 4-63 (71)
10 3b5n_B Protein SSO1; snare com 97.4 0.0025 8.6E-08 39.5 9.3 61 39-99 6-66 (69)
11 1gl2_B Syntaxin 7; membrane pr 97.3 0.0017 5.8E-08 39.9 8.0 59 39-97 5-63 (65)
12 1sfc_B Protein (syntaxin 1A), 97.3 0.0026 8.8E-08 40.9 9.2 64 37-100 15-78 (83)
13 1n7s_B Syntaxin 1A; neuronal s 97.2 0.0028 9.6E-08 39.2 8.0 59 39-97 8-66 (68)
14 2kog_A Vesicle-associated memb 96.7 0.0011 3.9E-08 45.5 3.2 40 44-83 34-73 (119)
15 3hd7_A Vesicle-associated memb 96.4 0.046 1.6E-06 35.6 9.3 53 44-97 6-62 (91)
16 3hd7_A Vesicle-associated memb 95.8 0.077 2.6E-06 34.5 8.3 56 35-91 8-63 (91)
17 1dn1_B Syntaxin 1A, syntaxin b 95.0 0.012 4.2E-07 45.1 2.8 62 39-100 196-257 (267)
18 1n7s_C SNAP-25A; neuronal snar 90.3 2.3 7.7E-05 26.7 8.7 43 56-98 36-78 (79)
19 3c98_B Syntaxin-1A; protein co 90.2 0.15 5.3E-06 37.5 2.5 62 39-100 208-269 (279)
20 1nhl_A Synaptosomal-associated 90.1 0.64 2.2E-05 27.2 4.7 42 54-95 11-52 (54)
21 2xhe_B Syntaxin1; exocytosis, 89.0 0.084 2.9E-06 40.3 0.3 61 39-99 213-273 (279)
22 3efg_A Protein SLYX homolog; x 88.9 2.1 7.3E-05 26.9 6.8 53 39-91 10-62 (78)
23 3hd7_B Syntaxin-1A; membrane p 86.6 5.1 0.00018 26.4 9.2 62 39-100 24-85 (109)
24 1gl2_C VTI1B, vesicle transpor 84.0 5.1 0.00017 24.0 7.3 54 45-98 11-64 (65)
25 1gmj_A ATPase inhibitor; coile 82.8 1.6 5.4E-05 28.1 3.8 28 62-89 49-76 (84)
26 2kog_A Vesicle-associated memb 81.1 0.21 7.2E-06 34.0 -0.8 56 35-98 36-91 (119)
27 1ic2_A Tropomyosin alpha chain 79.2 9.1 0.00031 23.8 8.2 65 37-101 11-78 (81)
28 2nps_C Vesicle transport throu 78.4 9.9 0.00034 23.7 8.7 46 55-100 31-76 (81)
29 2rdd_B UPF0092 membrane protei 77.8 2 6.8E-05 23.1 2.7 15 109-123 5-19 (37)
30 1l4a_C S-SNAP25 fusion protein 76.8 6.8 0.00023 24.9 5.4 40 57-96 41-80 (83)
31 3b5n_C Protein transport prote 73.0 13 0.00046 22.7 8.5 54 44-97 10-66 (70)
32 1ezj_A Nucleocapsid phosphopro 70.8 13 0.00046 24.6 5.8 36 39-74 69-104 (115)
33 3u1c_A Tropomyosin alpha-1 cha 63.9 26 0.00091 22.6 7.9 56 44-99 24-79 (101)
34 1sfc_A VAMP 2, protein (synapt 63.5 27 0.00091 22.4 8.0 39 44-82 31-69 (96)
35 2iub_A CORA, divalent cation t 63.2 50 0.0017 25.5 9.9 15 83-97 295-309 (363)
36 4i0x_B ESAT-6-like protein MAB 62.7 26 0.00089 22.1 8.2 55 45-99 13-77 (103)
37 1jcd_A Major outer membrane li 61.9 21 0.00071 20.7 6.9 10 46-55 7-16 (52)
38 2pjw_V Vacuolar protein sortin 61.7 16 0.00054 23.6 4.7 42 41-83 31-73 (91)
39 3a7p_A Autophagy protein 16; c 60.1 42 0.0014 23.6 8.7 59 41-99 66-124 (152)
40 1deb_A APC protein, adenomatou 55.9 27 0.00094 20.2 5.6 39 45-83 5-43 (54)
41 3u59_A Tropomyosin beta chain; 54.6 39 0.0013 21.6 7.9 54 44-97 24-77 (101)
42 3na7_A HP0958; flagellar bioge 54.5 55 0.0019 24.2 7.4 54 43-96 32-85 (256)
43 2kwh_A RAla-binding protein 1; 51.7 11 0.00036 22.3 2.4 22 60-81 6-27 (56)
44 4ev6_A Magnesium transport pro 51.0 80 0.0027 24.1 9.4 14 84-97 272-285 (339)
45 3fym_A Putative uncharacterize 48.9 2.8 9.5E-05 28.1 -0.6 24 55-81 54-77 (130)
46 2v71_A Nuclear distribution pr 48.7 74 0.0025 23.0 9.4 54 35-88 41-94 (189)
47 3p8c_F ABL interactor 2; actin 47.1 73 0.0025 22.5 8.7 62 35-96 46-107 (159)
48 1jcd_A Major outer membrane li 46.8 40 0.0014 19.4 5.9 15 43-57 11-25 (52)
49 1h7c_A Tubulin-specific chaper 43.6 59 0.002 21.3 5.4 53 47-100 32-84 (108)
50 1jdm_A Sarcolipin; helix, memb 42.9 29 0.00098 17.8 2.9 16 110-125 12-27 (31)
51 3zrx_A AF1503 protein, osmolar 42.7 51 0.0017 19.4 8.2 64 36-99 41-108 (115)
52 2l9u_A Receptor tyrosine-prote 41.8 16 0.00056 19.6 1.9 12 108-119 11-22 (40)
53 3oja_B Anopheles plasmodium-re 41.4 1.4E+02 0.0047 24.1 9.2 44 57-100 537-580 (597)
54 1m1j_B Fibrinogen beta chain; 41.1 1.5E+02 0.0051 24.4 9.0 16 42-57 99-114 (464)
55 3efg_A Protein SLYX homolog; x 38.7 68 0.0023 19.8 5.6 41 60-100 17-57 (78)
56 1a93_B MAX protein, coiled coi 36.2 23 0.00079 18.8 2.0 12 64-75 17-28 (34)
57 3gwk_C SAG1039, putative uncha 35.7 74 0.0025 19.3 8.1 29 48-76 13-41 (98)
58 3oja_A Leucine-rich immune mol 34.8 1.7E+02 0.0057 23.1 9.4 41 59-99 444-484 (487)
59 3h6p_C ESAT-6-like protein ESX 33.8 73 0.0025 19.4 4.5 30 47-76 10-39 (96)
60 2l34_A TYRO protein tyrosine k 32.9 36 0.0012 17.7 2.4 12 114-125 21-32 (33)
61 2dnx_A Syntaxin-12; snare, HAB 32.1 96 0.0033 20.6 5.1 64 35-99 13-76 (130)
62 3p8c_D Wiskott-aldrich syndrom 31.9 1.7E+02 0.0059 22.4 7.3 32 68-99 47-78 (279)
63 3ra3_A P1C; coiled coil domain 31.8 50 0.0017 16.2 2.6 18 36-57 4-21 (28)
64 1qsd_A Protein (beta-tubulin b 31.5 1.1E+02 0.0037 19.9 5.8 53 47-100 29-82 (106)
65 3kqg_A Langerin, C-type lectin 30.8 1E+02 0.0035 20.7 5.2 37 37-74 11-47 (182)
66 3j1r_A Archaeal adhesion filam 30.8 54 0.0018 16.2 2.7 16 109-124 10-25 (26)
67 3fav_B ESAT-6, 6 kDa early sec 30.7 89 0.0031 18.7 6.8 53 46-98 8-68 (94)
68 3oja_B Anopheles plasmodium-re 30.0 1.3E+02 0.0046 24.2 6.6 35 63-97 529-563 (597)
69 2knc_A Integrin alpha-IIB; tra 30.0 31 0.0011 20.1 2.0 6 119-124 29-34 (54)
70 4aj5_A SKA1, spindle and kinet 29.7 1.1E+02 0.0039 19.6 5.0 45 55-100 35-79 (91)
71 2wuj_A Septum site-determining 29.6 83 0.0029 18.0 5.0 29 38-66 22-50 (57)
72 3ghg_A Fibrinogen alpha chain; 29.1 2.6E+02 0.0089 23.6 8.1 33 55-87 115-147 (562)
73 2fyz_B Fusion protein, fusion 28.6 34 0.0012 19.4 2.0 32 60-91 10-41 (48)
74 2l8s_A Integrin alpha-1; trans 28.1 36 0.0012 19.9 2.0 6 119-124 26-31 (54)
75 3cx5_D Cytochrome C1, heme pro 27.9 28 0.00094 26.4 1.9 17 107-123 210-226 (248)
76 2yiu_B Cytochrome C1, heme pro 27.8 27 0.00094 26.7 1.9 17 107-123 232-248 (263)
77 4i0x_A ESAT-6-like protein MAB 27.5 1.1E+02 0.0037 18.7 7.6 30 47-76 4-33 (94)
78 3v86_A De novo design helix; c 27.1 62 0.0021 15.8 3.8 22 47-68 4-25 (27)
79 1s0p_A CAP, adenylyl cyclase-a 26.6 1.5E+02 0.0053 21.0 5.6 29 46-74 7-35 (176)
80 1s94_A S-syntaxin; three helix 26.1 1.5E+02 0.0051 20.4 5.5 60 39-98 46-108 (180)
81 1zrt_D Cytochrome C1; cytochro 26.1 31 0.0011 26.3 1.9 17 107-123 229-245 (258)
82 2vs0_A Virulence factor ESXA; 26.1 1.1E+02 0.0037 18.2 8.1 28 48-75 11-38 (97)
83 3mxz_A Tubulin-specific chaper 25.6 1.5E+02 0.0051 19.6 5.9 51 49-100 35-85 (116)
84 1pp9_D Cytochrome C-1, cytochr 25.3 33 0.0011 25.9 1.9 17 107-123 206-222 (241)
85 1qoy_A Hemolysin E; toxin, mem 25.3 1.7E+02 0.0059 22.9 6.0 55 42-97 22-80 (318)
86 1b9u_A Protein (ATP synthase); 25.2 39 0.0013 17.1 1.7 12 111-122 13-24 (34)
87 2qjy_B Cytochrome C1; cytochro 25.2 33 0.0011 26.3 1.9 17 107-123 231-247 (269)
88 1qu7_A Methyl-accepting chemot 25.0 2E+02 0.0067 20.8 6.8 54 42-95 146-199 (227)
89 1z65_A PRPLP, prion-like prote 24.6 36 0.0012 17.4 1.4 12 106-117 7-18 (30)
90 2k1a_A Integrin alpha-IIB; sin 24.6 47 0.0016 18.2 2.0 6 119-124 27-32 (42)
91 3zx6_A HAMP, methyl-accepting 23.1 2.5E+02 0.0085 21.3 9.1 51 42-92 58-108 (341)
92 1gd2_E Transcription factor PA 23.0 1.3E+02 0.0045 18.1 5.7 42 36-77 22-63 (70)
93 2pjw_H Uncharacterized protein 22.8 1.5E+02 0.0052 18.7 5.3 45 38-83 30-75 (88)
94 3mk7_C Cytochrome C oxidase, C 22.6 42 0.0014 25.4 2.1 18 106-123 57-74 (311)
95 3s8f_C Cytochrome C oxidase po 22.5 60 0.002 17.1 2.1 9 105-113 7-15 (34)
96 1lwu_C Fibrinogen gamma chain; 22.5 2.6E+02 0.009 21.7 6.7 37 48-84 17-53 (323)
97 3zx6_A HAMP, methyl-accepting 22.3 2.6E+02 0.0088 21.2 8.6 48 44-91 228-275 (341)
98 3zcc_A HAMP, osmolarity sensor 22.3 1.3E+02 0.0043 17.6 6.4 35 35-69 40-74 (114)
99 2ki9_A Cannabinoid receptor 2; 22.0 19 0.00065 17.9 0.0 13 109-121 7-19 (33)
100 3nmd_A CGMP dependent protein 21.4 1.5E+02 0.0051 18.1 5.7 33 62-94 31-63 (72)
101 4dah_A Sporulation kinase D; a 21.3 1.6E+02 0.0056 19.8 4.9 27 55-81 22-48 (217)
102 2d4y_A HAP1, flagellar HOOK-as 20.7 2.6E+02 0.0088 22.2 6.5 55 35-89 67-121 (463)
103 1ic2_A Tropomyosin alpha chain 20.6 1.5E+02 0.0052 17.9 7.2 52 46-97 2-53 (81)
104 3zbh_A ESXA; unknown function, 20.5 1.5E+02 0.005 17.6 8.2 16 40-55 27-42 (99)
105 1ez3_A Syntaxin-1A; three heli 20.5 1.7E+02 0.006 18.5 5.0 16 43-58 19-34 (127)
106 2ieq_A S glycoprotein, spike g 20.4 1.5E+02 0.0053 19.6 4.2 32 40-71 73-104 (109)
107 1oxj_A RNA-binding protein sma 20.1 1.1E+02 0.0038 21.9 3.8 65 35-100 32-96 (173)
No 1
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=99.78 E-value=5.3e-19 Score=115.91 Aligned_cols=71 Identities=17% Similarity=0.289 Sum_probs=61.6
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHhcCCcc
Q 039203 35 GIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRR 105 (125)
Q Consensus 35 ~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~~~~~~ 105 (125)
+.+.+|||+.||.|+++|.+||++|.+||+||+.||++||+|+++||++..+|+++++|+.++++++++++
T Consensus 11 ~~~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~~~~ 81 (82)
T 2nps_D 11 NNMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDRR 81 (82)
T ss_dssp -------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Confidence 66778999999999999999999999999999999999999999999999999999999999999887764
No 2
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.75 E-value=4.1e-18 Score=112.88 Aligned_cols=78 Identities=17% Similarity=0.294 Sum_probs=68.5
Q ss_pred CCCCCCCCCCCCCcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh
Q 039203 21 LEEGGLKASSSYSSGIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK 100 (125)
Q Consensus 21 ~~~~~~~~~~~~~~~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~ 100 (125)
.|.|+|-...+. +.+++|||+.||.|+..|++||++|.+|++||+.||++||+++++||++..+|..+++|+++++++
T Consensus 9 ~~s~~yi~~~~~--d~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll~k 86 (87)
T 1sfc_D 9 AISGGFIRRVTN--DARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGS 86 (87)
T ss_dssp ---CCCSCCSSC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCchhhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 455667554433 899999999999999999999999999999999999999999999999999999999999999754
No 3
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.74 E-value=4.3e-18 Score=106.96 Aligned_cols=64 Identities=17% Similarity=0.310 Sum_probs=53.8
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHH
Q 039203 36 IDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFE 99 (125)
Q Consensus 36 ~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~ 99 (125)
.+++|||+.||.|+++|++||++|.+||+||+.||++||++++.||++..+|+.+++|+.++++
T Consensus 2 ~~~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l~k 65 (65)
T 1gl2_D 2 SHMQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLVDR 65 (65)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4678999999999999999999999999999999999999999999999999999999998863
No 4
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=99.73 E-value=8e-18 Score=106.00 Aligned_cols=64 Identities=17% Similarity=0.323 Sum_probs=61.9
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHH
Q 039203 35 GIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVF 98 (125)
Q Consensus 35 ~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~ 98 (125)
+.+|+|||+.|+.|+++|++||++|.+||+||+.||++||++++.||++..+|+.+++|+++++
T Consensus 2 d~~e~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ll 65 (66)
T 1n7s_D 2 SARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML 65 (66)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHc
Confidence 4689999999999999999999999999999999999999999999999999999999999875
No 5
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.68 E-value=1e-16 Score=106.19 Aligned_cols=65 Identities=15% Similarity=0.279 Sum_probs=62.7
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHH
Q 039203 35 GIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFE 99 (125)
Q Consensus 35 ~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~ 99 (125)
+..++|||+.||.|+..|++||++|.+|+.||+.||++||++++.+|++..+|..+++|++++++
T Consensus 22 d~~e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kll~ 86 (87)
T 1l4a_D 22 DAREDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLLK 86 (87)
T ss_dssp SHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHCC-
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77899999999999999999999999999999999999999999999999999999999999875
No 6
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.2e-14 Score=91.14 Aligned_cols=63 Identities=17% Similarity=0.229 Sum_probs=60.4
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHH
Q 039203 35 GIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMV 97 (125)
Q Consensus 35 ~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v 97 (125)
+.+|.|+|+.|+.|++.+++||++|.+||+||+.||++||.++..+|++..++..+++|++++
T Consensus 2 d~~E~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~i 64 (64)
T 3b5n_D 2 SEMELEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAGI 64 (64)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 468999999999999999999999999999999999999999999999999999999999863
No 7
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=99.08 E-value=1.1e-09 Score=74.93 Aligned_cols=73 Identities=16% Similarity=0.219 Sum_probs=62.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHH--hcCCcceehHH
Q 039203 38 EHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFE--KKSNRRICTLV 110 (125)
Q Consensus 38 e~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~--~~~~~~~~~lI 110 (125)
.++-++.+..|.+++..|+++..++...+.+|..++|.++..++++...+..+.+.+.+..+ +++.++.||++
T Consensus 16 i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i~l 90 (109)
T 3hd7_B 16 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMII 90 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceehH
Confidence 36677789999999999999999999999999999999999999999999999999998854 33334444433
No 8
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=98.01 E-value=6.9e-05 Score=47.68 Aligned_cols=62 Identities=16% Similarity=0.185 Sum_probs=57.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh
Q 039203 39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK 100 (125)
Q Consensus 39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~ 100 (125)
++-.+.+..|.+++.-|+.+..++..-|.+|..+||.++..++.+...+..+...+.+..+.
T Consensus 6 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~ 67 (77)
T 1jth_B 6 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 67 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556799999999999999999999999999999999999999999999999999999873
No 9
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=97.65 E-value=0.00048 Score=43.09 Aligned_cols=60 Identities=13% Similarity=0.221 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh
Q 039203 41 NDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK 100 (125)
Q Consensus 41 qD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~ 100 (125)
-.+.+..|..++.-|+.+..++..-|.+|..+||.++..++.+...+..+...+.+..+.
T Consensus 4 R~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~ 63 (71)
T 2nps_B 4 RETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYY 63 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999999999999999999999999999999999999999999998764
No 10
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=97.38 E-value=0.0025 Score=39.54 Aligned_cols=61 Identities=11% Similarity=0.146 Sum_probs=56.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHH
Q 039203 39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFE 99 (125)
Q Consensus 39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~ 99 (125)
++-.+.+..|.+++.-|+.+..++..-|.+|..+||.++..++.+...+..+.+.+.+..+
T Consensus 6 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 66 (69)
T 3b5n_B 6 QARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVK 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455679999999999999999999999999999999999999999999999999988765
No 11
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=97.33 E-value=0.0017 Score=39.90 Aligned_cols=59 Identities=8% Similarity=0.241 Sum_probs=53.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHH
Q 039203 39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMV 97 (125)
Q Consensus 39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v 97 (125)
++-.+.+..|.+++.-|+.+..++..-|.+|..+||.++..++.+...+..+.+.+.+.
T Consensus 5 ~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA 63 (65)
T 1gl2_B 5 HERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRA 63 (65)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455689999999999999999999999999999999999999999999999988764
No 12
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=97.32 E-value=0.0026 Score=40.86 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=58.7
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh
Q 039203 37 DEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK 100 (125)
Q Consensus 37 le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~ 100 (125)
..++-.+.+..|.+++.-|+.+..++..-|.+|..+||.++..++.+...+..+.+.+.+..+.
T Consensus 15 ~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~ 78 (83)
T 1sfc_B 15 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666799999999999999999999999999999999999999999999999999998764
No 13
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=97.20 E-value=0.0028 Score=39.16 Aligned_cols=59 Identities=17% Similarity=0.199 Sum_probs=54.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHH
Q 039203 39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMV 97 (125)
Q Consensus 39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v 97 (125)
++-.+.+..|.+++.-|+.+-.++..=|.+|..+||.++..++.+...+..+.+.+.+.
T Consensus 8 ~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA 66 (68)
T 1n7s_B 8 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556799999999999999999999999999999999999999999999999988775
No 14
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=96.68 E-value=0.0011 Score=45.55 Aligned_cols=40 Identities=10% Similarity=0.097 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhh
Q 039203 44 AIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDAS 83 (125)
Q Consensus 44 ~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t 83 (125)
.+..+...|...|.+-..=-+.+-+-.+-||+|.+.-++.
T Consensus 34 ~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L 73 (119)
T 2kog_A 34 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADAL 73 (119)
T ss_dssp HHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3444444454444433322233434444566666554443
No 15
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=96.35 E-value=0.046 Score=35.57 Aligned_cols=53 Identities=9% Similarity=0.196 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHH---hhhhhhhhHHHHHHHH
Q 039203 44 AIDGLKERAVFLKRLTG-DIHEEVESHNRLLDRMGNSMD---ASRGIMSGTMDRFKMV 97 (125)
Q Consensus 44 ~Ld~L~~~V~~LK~ia~-~I~~El~~Qn~lLD~l~~~~d---~t~~~L~~t~~rl~~v 97 (125)
.+..+.+.|...|.+-. +|..-++ ..+-||+|.+.-+ .......++.+++++-
T Consensus 6 ~l~~vq~ev~evk~iM~~NI~kvL~-RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rk 62 (91)
T 3hd7_A 6 RLQQTQAQVDEVVDIMRVNVDKVLE-RDQKLSELDDRADALQAGASQFETSAAKLKRK 62 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666554433 3443333 3334555554444 3334445555555544
No 16
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=95.81 E-value=0.077 Score=34.50 Aligned_cols=56 Identities=9% Similarity=0.123 Sum_probs=34.1
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHH
Q 039203 35 GIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTM 91 (125)
Q Consensus 35 ~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~ 91 (125)
..+.+|-|+--+.+.+.+..+-+-+..+. ++.+..+-|..-...|.++..++++.+
T Consensus 8 ~~vq~ev~evk~iM~~NI~kvL~RgekL~-~L~~kt~~L~~~s~~F~~~A~~l~rkm 63 (91)
T 3hd7_A 8 QQTQAQVDEVVDIMRVNVDKVLERDQKLS-ELDDRADALQAGASQFETSAAKLKRKY 63 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666565554 344444456666667777777776653
No 17
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=95.02 E-value=0.012 Score=45.05 Aligned_cols=62 Identities=16% Similarity=0.185 Sum_probs=49.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh
Q 039203 39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK 100 (125)
Q Consensus 39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~ 100 (125)
++-.+.+..|..++.-|+.+-.++..-|.+|..+||.++..++.+...+..+...+.+..+-
T Consensus 196 ~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~ 257 (267)
T 1dn1_B 196 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 257 (267)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555689999999999999999999999999999999999999999999999999988663
No 18
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=90.26 E-value=2.3 Score=26.73 Aligned_cols=43 Identities=16% Similarity=0.089 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHH
Q 039203 56 KRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVF 98 (125)
Q Consensus 56 K~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~ 98 (125)
+.+|..+-.+|..|.+-|+.+...++.....|+.+-+.|+.+.
T Consensus 36 e~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~ 78 (79)
T 1n7s_C 36 KDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLG 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhc
Confidence 4688888999999999999999999999999999999888764
No 19
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=90.19 E-value=0.15 Score=37.49 Aligned_cols=62 Identities=16% Similarity=0.185 Sum_probs=49.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh
Q 039203 39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK 100 (125)
Q Consensus 39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~ 100 (125)
++-.+.+..|...+..+..+..+|..-+++|...+++++..++.+...+..+...+.+..+.
T Consensus 208 ~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~ 269 (279)
T 3c98_B 208 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 269 (279)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566789999999999999999999999999999999999999999999999988887654
No 20
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=90.09 E-value=0.64 Score=27.16 Aligned_cols=42 Identities=12% Similarity=0.086 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHH
Q 039203 54 FLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFK 95 (125)
Q Consensus 54 ~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~ 95 (125)
--..++..+-.++..|.+-|+.++..++.....|+.+-+.++
T Consensus 11 ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~ 52 (54)
T 1nhl_A 11 ESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLT 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence 346778889999999999999999999999999999887765
No 21
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=89.03 E-value=0.084 Score=40.34 Aligned_cols=61 Identities=20% Similarity=0.291 Sum_probs=45.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHH
Q 039203 39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFE 99 (125)
Q Consensus 39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~ 99 (125)
++=.+.+..|..++.-|+.+-.++..-|.+|..+||.++..++.+...+..+.+.+.+..+
T Consensus 213 ~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~~ 273 (279)
T 2xhe_B 213 RDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARH 273 (279)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445569999999999999999999999999999999999999999999999999988765
No 22
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=88.86 E-value=2.1 Score=26.90 Aligned_cols=53 Identities=9% Similarity=0.072 Sum_probs=43.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHH
Q 039203 39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTM 91 (125)
Q Consensus 39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~ 91 (125)
.+.++.++.|..++..+-..=..+++.|-.|...||.|...+.....+++...
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667899999999999999999999999999999999998888888876544
No 23
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=86.59 E-value=5.1 Score=26.37 Aligned_cols=62 Identities=8% Similarity=0.014 Sum_probs=39.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh
Q 039203 39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK 100 (125)
Q Consensus 39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~ 100 (125)
.+-++.+.+|++-...+-.+-.+=++-++.=..-++...+.++.+...|+++.+.=++--++
T Consensus 24 ~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk 85 (109)
T 3hd7_B 24 IKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRK 85 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 34444555666655555555555555555556667788888888888888887665555443
No 24
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=83.99 E-value=5.1 Score=24.03 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHH
Q 039203 45 IDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVF 98 (125)
Q Consensus 45 Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~ 98 (125)
|..-...+.--..+|..|-.+|..|-+-|....+.++.++..|.++.+-|+.+.
T Consensus 11 l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m~ 64 (65)
T 1gl2_C 11 IERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMS 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhhc
Confidence 333334444456899999999999999999999999999999999988877653
No 25
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=82.83 E-value=1.6 Score=28.10 Aligned_cols=28 Identities=11% Similarity=0.362 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhhhhhhh
Q 039203 62 IHEEVESHNRLLDRMGNSMDASRGIMSG 89 (125)
Q Consensus 62 I~~El~~Qn~lLD~l~~~~d~t~~~L~~ 89 (125)
+-+|++.|.+-|++++..+++...+|+.
T Consensus 49 l~~el~~h~~ei~~le~~i~rhk~~i~~ 76 (84)
T 1gmj_A 49 KENEISHHAKEIERLQKEIERHKQSIKK 76 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999998888776555543
No 26
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=81.12 E-value=0.21 Score=34.03 Aligned_cols=56 Identities=11% Similarity=0.161 Sum_probs=32.4
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHH
Q 039203 35 GIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVF 98 (125)
Q Consensus 35 ~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~ 98 (125)
..+.+|-|+--+.+.+.+..+-+=+..+ +.|++-.+.+.......++..+++++-+
T Consensus 36 ~~vq~evdeVk~IM~~NIdkvLeRGEkL--------d~L~~KTe~L~~~S~~F~k~A~kl~rkm 91 (119)
T 2kog_A 36 QQTQAQVDEVVDIMRVNVDKVLERDQKL--------SELDDRADALQAGASQFETSAAKLKRKY 91 (119)
T ss_dssp HHSSHHHHHHHHHHHHHHHHHHCCCCSS--------CCCCSCCSCCCSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666654443333 2355555566666666666666665543
No 27
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=79.17 E-value=9.1 Score=23.76 Aligned_cols=65 Identities=9% Similarity=0.170 Sum_probs=49.9
Q ss_pred hHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHhc
Q 039203 37 DEHDNDKA---IDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKK 101 (125)
Q Consensus 37 le~eqD~~---Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~~ 101 (125)
+..+-|.. ++.+...+.....-+.....|+..-++-+-.+.+++|.+..+|..+..++...-+..
T Consensus 11 lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~~ 78 (81)
T 1ic2_A 11 LKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKKA 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444 445555555556677888999999999999999999999999999999998775543
No 28
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=78.42 E-value=9.9 Score=23.75 Aligned_cols=46 Identities=4% Similarity=0.177 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh
Q 039203 55 LKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK 100 (125)
Q Consensus 55 LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~ 100 (125)
-..+|..|-.||..|-+-|-...+.++.++..+.++.+-|+.+.+.
T Consensus 31 TE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr 76 (81)
T 2nps_C 31 TEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRR 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999999999998765
No 29
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=77.81 E-value=2 Score=23.09 Aligned_cols=15 Identities=27% Similarity=0.554 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHH
Q 039203 109 LVGSFVVSFFVLYYL 123 (125)
Q Consensus 109 lI~~lvviflvly~l 123 (125)
.++.++++|+++||+
T Consensus 5 ~~l~~v~~~~ifYFl 19 (37)
T 2rdd_B 5 LILMLVVFGLIFYFM 19 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455666667765
No 30
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=76.75 E-value=6.8 Score=24.87 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHH
Q 039203 57 RLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKM 96 (125)
Q Consensus 57 ~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~ 96 (125)
.+|..--.++..|.+-|+.++..+|.....|+.+-+.++.
T Consensus 41 ~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~ 80 (83)
T 1l4a_C 41 EAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEG 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566666789999999999999999999988888776543
No 31
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=73.04 E-value=13 Score=22.66 Aligned_cols=54 Identities=6% Similarity=0.068 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHH
Q 039203 44 AIDGLKERAVFL---KRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMV 97 (125)
Q Consensus 44 ~Ld~L~~~V~~L---K~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v 97 (125)
.++.-...+... ...|..--.++..|.+-|+.++..+|.....++.+-++++.+
T Consensus 10 sl~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~L 66 (70)
T 3b5n_C 10 SVASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444443 346777778999999999999999999999999999999876
No 32
>1ezj_A Nucleocapsid phosphoprotein; four stranded coiled coil, viral polymerase, T viral protein, transferase; 1.90A {Sendai virus} SCOP: h.1.14.1
Probab=70.80 E-value=13 Score=24.55 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=27.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039203 39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLD 74 (125)
Q Consensus 39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD 74 (125)
+|||..|..+.+.+..+|.+-...-+--++|+.++-
T Consensus 69 ~en~~~L~QIQ~ei~s~rd~hkR~~E~QkEQ~SL~~ 104 (115)
T 1ezj_A 69 DENKQLLKQIQESVESFRDIYKRFSEYQKEQNSLLM 104 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 568888888888888888777777777777777654
No 33
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=63.92 E-value=26 Score=22.57 Aligned_cols=56 Identities=9% Similarity=0.079 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHH
Q 039203 44 AIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFE 99 (125)
Q Consensus 44 ~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~ 99 (125)
..+.+...+.....-+.....||..-++-+-.+.+.+|.+...|..+..++..--+
T Consensus 24 rae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek 79 (101)
T 3u1c_A 24 RAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEE 79 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777788888999999999999999999999999999988887776543
No 34
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=63.53 E-value=27 Score=22.44 Aligned_cols=39 Identities=10% Similarity=0.118 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Q 039203 44 AIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDA 82 (125)
Q Consensus 44 ~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~ 82 (125)
.|..+...|...+.+-..=-+.|-+-.+-||+|.+.-+.
T Consensus 31 ~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~ 69 (96)
T 1sfc_A 31 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADA 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 555666666666554444334444445556666655444
No 35
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=63.20 E-value=50 Score=25.53 Aligned_cols=15 Identities=7% Similarity=0.160 Sum_probs=8.8
Q ss_pred hhhhhhhHHHHHHHH
Q 039203 83 SRGIMSGTMDRFKMV 97 (125)
Q Consensus 83 t~~~L~~t~~rl~~v 97 (125)
.+.+++..++.+.-+
T Consensus 295 is~~~N~imk~LTii 309 (363)
T 2iub_A 295 VSNKTNEVMKVLTII 309 (363)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345666666666554
No 36
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=62.74 E-value=26 Score=22.07 Aligned_cols=55 Identities=5% Similarity=0.062 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----------HHhhhhhhhhHHHHHHHHHH
Q 039203 45 IDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNS----------MDASRGIMSGTMDRFKMVFE 99 (125)
Q Consensus 45 Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~----------~d~t~~~L~~t~~rl~~v~~ 99 (125)
.+.|...+..+...+..|.++|+.=...++.|... |.....+.+...+++...+.
T Consensus 13 ~~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L~ 77 (103)
T 4i0x_B 13 LDHIEQVTSRARGFKEFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGLS 77 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777778888888888887777777777665 55566666666666655554
No 37
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=61.90 E-value=21 Score=20.67 Aligned_cols=10 Identities=20% Similarity=0.003 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 039203 46 DGLKERAVFL 55 (125)
Q Consensus 46 d~L~~~V~~L 55 (125)
+.|+..|+.|
T Consensus 7 ~~Lss~V~~L 16 (52)
T 1jcd_A 7 DQASSDAQTA 16 (52)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 38
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=61.69 E-value=16 Score=23.57 Aligned_cols=42 Identities=21% Similarity=0.331 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHhh
Q 039203 41 NDKAIDGLKERAVFLK-RLTGDIHEEVESHNRLLDRMGNSMDAS 83 (125)
Q Consensus 41 qD~~Ld~L~~~V~~LK-~ia~~I~~El~~Qn~lLD~l~~~~d~t 83 (125)
.|..|.+|..+|..+| .++..|++....++.+ =+|++.+..+
T Consensus 31 ~d~~LqeLy~kv~~lRPKL~r~l~~~~~K~~~L-~~mn~Kls~a 73 (91)
T 2pjw_V 31 EDSKLQNLAQRVFASKARLNYALNDKAQKYNTL-IEMNGKISEI 73 (91)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3568999999999999 8999999999999964 4565555444
No 39
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=60.12 E-value=42 Score=23.62 Aligned_cols=59 Identities=7% Similarity=-0.005 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHH
Q 039203 41 NDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFE 99 (125)
Q Consensus 41 qD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~ 99 (125)
....+..|......++.=-.+...|++..++.++.+.+.+......++-.-.++.++-+
T Consensus 66 ~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~ 124 (152)
T 3a7p_A 66 LLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKK 124 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888888889999999999999999999999999999999998888888888754
No 40
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=55.94 E-value=27 Score=20.18 Aligned_cols=39 Identities=18% Similarity=0.274 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhh
Q 039203 45 IDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDAS 83 (125)
Q Consensus 45 Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t 83 (125)
.|.|-..|..||.=...+..|+++-..-|..++......
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~m 43 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNM 43 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhH
Confidence 467888899999888999999998888888777665443
No 41
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=54.58 E-value=39 Score=21.59 Aligned_cols=54 Identities=6% Similarity=0.091 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHH
Q 039203 44 AIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMV 97 (125)
Q Consensus 44 ~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v 97 (125)
..+.+...+.....-+....+|+..-++-+-.+.+.+|.+..++..+..++..-
T Consensus 24 ~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ 77 (101)
T 3u59_A 24 RAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777778888888998888888889999999888888888776654
No 42
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=54.52 E-value=55 Score=24.18 Aligned_cols=54 Identities=7% Similarity=0.092 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHH
Q 039203 43 KAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKM 96 (125)
Q Consensus 43 ~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~ 96 (125)
..++.|...+..++.-...+..++++-..-+..++..++.+..++.+..+++..
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~ 85 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE 85 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445666666666777777777777777777777777777777777777777654
No 43
>2kwh_A RAla-binding protein 1; GTPase activation, transport protein; NMR {Homo sapiens} PDB: 2kwi_B*
Probab=51.74 E-value=11 Score=22.33 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHH
Q 039203 60 GDIHEEVESHNRLLDRMGNSMD 81 (125)
Q Consensus 60 ~~I~~El~~Qn~lLD~l~~~~d 81 (125)
..|..|+.-|..+|+.|...+.
T Consensus 6 e~I~~El~kQe~lL~~LH~e~~ 27 (56)
T 2kwh_A 6 AGIKEEIRRQEFLLNSLHRDLQ 27 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3688999999999999999885
No 44
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=51.00 E-value=80 Score=24.07 Aligned_cols=14 Identities=29% Similarity=0.228 Sum_probs=7.6
Q ss_pred hhhhhhHHHHHHHH
Q 039203 84 RGIMSGTMDRFKMV 97 (125)
Q Consensus 84 ~~~L~~t~~rl~~v 97 (125)
+.+++.+++.+.-+
T Consensus 272 s~~~N~~mk~LTii 285 (339)
T 4ev6_A 272 NIKMNQIMKILTMV 285 (339)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555666665544
No 45
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=48.91 E-value=2.8 Score=28.09 Aligned_cols=24 Identities=8% Similarity=0.295 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 039203 55 LKRLTGDIHEEVESHNRLLDRMGNSMD 81 (125)
Q Consensus 55 LK~ia~~I~~El~~Qn~lLD~l~~~~d 81 (125)
++.+|...+-..+ .+++..+....
T Consensus 54 l~~ia~~L~v~~~---~l~~~~~~~~~ 77 (130)
T 3fym_A 54 IRKYASVVNIEPN---QLIQAHQDEIP 77 (130)
T ss_dssp HHHHHHHTTCCHH---HHHHHTTTTSC
T ss_pred HHHHHHHhCCCHH---HHHHHHHHhCC
Confidence 5555555553332 24444444433
No 46
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=48.72 E-value=74 Score=23.05 Aligned_cols=54 Identities=13% Similarity=0.048 Sum_probs=39.2
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhh
Q 039203 35 GIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMS 88 (125)
Q Consensus 35 ~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~ 88 (125)
..||.+.+..|+.+....+.|+.-...+..|++.-..-++.......++.+.|.
T Consensus 41 rELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq 94 (189)
T 2v71_A 41 RELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLE 94 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999998888888887755544444444433333333
No 47
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=47.11 E-value=73 Score=22.51 Aligned_cols=62 Identities=13% Similarity=0.168 Sum_probs=46.5
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHH
Q 039203 35 GIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKM 96 (125)
Q Consensus 35 ~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~ 96 (125)
..+++--+=....|.+-+-.+..+|..+-+=++.|..-++.|+..+......+.-=..|+.+
T Consensus 46 ~aleeTK~Ya~qsLaSVAyqIn~lA~~ll~lLd~Q~~~l~~mes~v~~l~Q~v~ih~EKvaR 107 (159)
T 3p8c_F 46 RALEETKAYTTQSLASVAYLINTLANNVLQMLDIQASQLRRMESSINHISQTVDIHKEKVAR 107 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55565556567788888888888888888889999888888888888877766554444433
No 48
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=46.76 E-value=40 Score=19.41 Aligned_cols=15 Identities=7% Similarity=-0.059 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q 039203 43 KAIDGLKERAVFLKR 57 (125)
Q Consensus 43 ~~Ld~L~~~V~~LK~ 57 (125)
..++.|..+|.+|+.
T Consensus 11 s~V~~L~~kVdqLss 25 (52)
T 1jcd_A 11 SDAQTANAKADQASN 25 (52)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555554
No 49
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=43.56 E-value=59 Score=21.27 Aligned_cols=53 Identities=8% Similarity=0.190 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh
Q 039203 47 GLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK 100 (125)
Q Consensus 47 ~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~ 100 (125)
.-..++..+|.-+.+ .-+|+.|...|++....+-.+..+|..+...+..++..
T Consensus 32 ~q~~riek~k~e~~D-ey~iKkq~evl~Et~~mipd~~~Rl~~a~~~L~~~l~~ 84 (108)
T 1h7c_A 32 QQEEKIEKMRAEDGE-NYDIKKQAEILQESRMMIPDCQRRLEAAYLDLQRILEN 84 (108)
T ss_dssp HHHHHHHHHHHHHCS-CTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 334445555544443 23788999999999999999999999999999999873
No 50
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=42.94 E-value=29 Score=17.79 Aligned_cols=16 Identities=13% Similarity=0.528 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHhC
Q 039203 110 VGSFVVSFFVLYYLIR 125 (125)
Q Consensus 110 I~~lvviflvly~l~k 125 (125)
..++++.++++|++++
T Consensus 12 Ft~vLI~vlLi~llVr 27 (31)
T 1jdm_A 12 FTIVLITVILMWLLVR 27 (31)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344445555666653
No 51
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=42.67 E-value=51 Score=19.44 Aligned_cols=64 Identities=11% Similarity=0.074 Sum_probs=31.9
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHH
Q 039203 36 IDEHDNDKAIDGLKERAVFLKRLTGDIHEEV----ESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFE 99 (125)
Q Consensus 36 ~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El----~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~ 99 (125)
.+...-+...+.|...+...+.....+.+|+ ..=...++.+..........+..+..++..+..
T Consensus 41 ~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 108 (115)
T 3zrx_A 41 ILAKSIERLRRSLKQLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIE 108 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666333333333443 333344444444444444555555555555543
No 52
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=41.84 E-value=16 Score=19.60 Aligned_cols=12 Identities=33% Similarity=0.708 Sum_probs=6.6
Q ss_pred hHHHHHHHHHHH
Q 039203 108 TLVGSFVVSFFV 119 (125)
Q Consensus 108 ~lI~~lvviflv 119 (125)
.+|+.++++|++
T Consensus 11 t~i~gl~vif~~ 22 (40)
T 2l9u_A 11 TVIAGLVVIFMM 22 (40)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 345555666554
No 53
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=41.40 E-value=1.4e+02 Score=24.09 Aligned_cols=44 Identities=20% Similarity=0.136 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh
Q 039203 57 RLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK 100 (125)
Q Consensus 57 ~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~ 100 (125)
.....+..|++.-.+.+++...........+.....+++.+.++
T Consensus 537 ~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 537 KETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444445555555555555555556665544
No 54
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=41.07 E-value=1.5e+02 Score=24.36 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 039203 42 DKAIDGLKERAVFLKR 57 (125)
Q Consensus 42 D~~Ld~L~~~V~~LK~ 57 (125)
+..|++|...|..|.+
T Consensus 99 ~~~LqeLe~~l~~lsn 114 (464)
T 1m1j_B 99 KPVLRDLKDRVAKFSD 114 (464)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhh
Confidence 3445555555555543
No 55
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=38.73 E-value=68 Score=19.75 Aligned_cols=41 Identities=7% Similarity=0.199 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh
Q 039203 60 GDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK 100 (125)
Q Consensus 60 ~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~ 100 (125)
.++..-+.-|.+.|++|++.+..-...+..-.+++..+.++
T Consensus 17 ~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~r 57 (78)
T 3efg_A 17 VELETRLSFQEQALTELSEALADARLTGARNAELIRHLLED 57 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677788888888888888888888888888877665
No 56
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=36.22 E-value=23 Score=18.77 Aligned_cols=12 Identities=25% Similarity=0.689 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHH
Q 039203 64 EEVESHNRLLDR 75 (125)
Q Consensus 64 ~El~~Qn~lLD~ 75 (125)
+|++.||.+|+.
T Consensus 17 ddlkrQN~~Le~ 28 (34)
T 1a93_B 17 DDLKRQNALLEQ 28 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 567778877764
No 57
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=35.67 E-value=74 Score=19.27 Aligned_cols=29 Identities=10% Similarity=0.023 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039203 48 LKERAVFLKRLTGDIHEEVESHNRLLDRM 76 (125)
Q Consensus 48 L~~~V~~LK~ia~~I~~El~~Qn~lLD~l 76 (125)
|......+++.+..|.+++..=...++.|
T Consensus 13 l~~~A~~~~~~~~~i~~~l~~L~~~~~~l 41 (98)
T 3gwk_C 13 LRSSAQKYTAGSQQVTEVLNLLTQEQAVI 41 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444333333333
No 58
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=34.81 E-value=1.7e+02 Score=23.10 Aligned_cols=41 Identities=10% Similarity=0.095 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHH
Q 039203 59 TGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFE 99 (125)
Q Consensus 59 a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~ 99 (125)
...+.+|-+.+.+.+++++.....+...++.+..+-..+..
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (487)
T 3oja_A 444 ETQLAEENARLKKLNGEADLALASANATLQELVVREQNLAS 484 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHHH
Confidence 33344444555667777777777777777777766555543
No 59
>3h6p_C ESAT-6-like protein ESXR; four-helix bundle, structural genomics, PSI-2, protein struc initiative, TB structural genomics consortium; 1.91A {Mycobacterium tuberculosis} PDB: 2kg7_B 3q4h_B
Probab=33.79 E-value=73 Score=19.39 Aligned_cols=30 Identities=7% Similarity=-0.023 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039203 47 GLKERAVFLKRLTGDIHEEVESHNRLLDRM 76 (125)
Q Consensus 47 ~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l 76 (125)
.|...+..++..+..|..++++=...++.|
T Consensus 10 ~~~~~a~~i~~~~~~i~~~l~~l~~~v~~L 39 (96)
T 3h6p_C 10 AMMAHAGDMAGYAGTLQSLGADIASEQAVL 39 (96)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555554444444444
No 60
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=32.88 E-value=36 Score=17.74 Aligned_cols=12 Identities=33% Similarity=0.614 Sum_probs=6.0
Q ss_pred HHHHHHHHHHhC
Q 039203 114 VVSFFVLYYLIR 125 (125)
Q Consensus 114 vviflvly~l~k 125 (125)
+++.+.+|++.|
T Consensus 21 ~~i~~~vy~~~r 32 (33)
T 2l34_A 21 VLIALAVYFLGR 32 (33)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHhheec
Confidence 344455565544
No 61
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.14 E-value=96 Score=20.60 Aligned_cols=64 Identities=9% Similarity=0.127 Sum_probs=46.7
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHH
Q 039203 35 GIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFE 99 (125)
Q Consensus 35 ~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~ 99 (125)
+.+-+.-...|-.|...|+.|+.+-..||.-=+ -.++=+.+.....++...++.+...|+++-.
T Consensus 13 ~~l~~~is~~I~~In~~vs~l~r~v~~LGT~kD-t~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~ 76 (130)
T 2dnx_A 13 SSIIQTCSGNIQRISQATAQIKNLMSQLGTKQD-SSKLQENLQQLQHSTNQLAKETNELLKELGS 76 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556677777788888888888888888876322 2336667777778888888888888877754
No 62
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=31.94 E-value=1.7e+02 Score=22.38 Aligned_cols=32 Identities=6% Similarity=-0.008 Sum_probs=20.5
Q ss_pred HHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHH
Q 039203 68 SHNRLLDRMGNSMDASRGIMSGTMDRFKMVFE 99 (125)
Q Consensus 68 ~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~ 99 (125)
-=+++..+|...+..+..+++.-..|+.++..
T Consensus 47 ~A~dIF~eL~~e~~~~~~R~~~L~~RI~~L~~ 78 (279)
T 3p8c_D 47 YAEDIFGELFNEAHSFSFRVNSLQERVDRLSV 78 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666677777777777766653
No 63
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=31.79 E-value=50 Score=16.23 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=9.4
Q ss_pred hhHHhHHHHHHHHHHHHHHHHH
Q 039203 36 IDEHDNDKAIDGLKERAVFLKR 57 (125)
Q Consensus 36 ~le~eqD~~Ld~L~~~V~~LK~ 57 (125)
.+|-||| .|.+++..||+
T Consensus 4 alefend----aleqkiaalkq 21 (28)
T 3ra3_A 4 ALEFEND----ALEQKIAALKQ 21 (28)
T ss_dssp HHHHHHH----HHHHHHHHHHH
T ss_pred hHHhccH----HHHHHHHHHHH
Confidence 4555665 34555555543
No 64
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=31.47 E-value=1.1e+02 Score=19.93 Aligned_cols=53 Identities=9% Similarity=0.122 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh
Q 039203 47 GLKERAVFLKRLTG-DIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK 100 (125)
Q Consensus 47 ~L~~~V~~LK~ia~-~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~ 100 (125)
.-..+|..+|.-+. + .-+|+.|...|++....+-.+..+|..+...+..++..
T Consensus 29 ~q~~riek~k~~~~~d-ey~iKkq~evl~Et~~mipd~~~Rl~~a~~~L~~~l~~ 82 (106)
T 1qsd_A 29 DQEAHVAKLKEDKSVD-PYDLKKQEEVLDDTKRLLPTLYEKIREFKEDLEQFLKT 82 (106)
T ss_dssp HHHHHHHHHHHCTTSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 33445555555432 2 35788999999999999999999999999999999853
No 65
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=30.79 E-value=1e+02 Score=20.68 Aligned_cols=37 Identities=14% Similarity=0.199 Sum_probs=19.9
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039203 37 DEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLD 74 (125)
Q Consensus 37 le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD 74 (125)
|.++++ .+..|..+|..|+..-..+...+..|+.++.
T Consensus 11 l~~~~~-~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~ 47 (182)
T 3kqg_A 11 LKSDLE-KASALNTKIRALQGSLENMSKLLKRQNDILQ 47 (182)
T ss_dssp --CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333343 5566666666666655555556665655443
No 66
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=30.79 E-value=54 Score=16.21 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHh
Q 039203 109 LVGSFVVSFFVLYYLI 124 (125)
Q Consensus 109 lI~~lvviflvly~l~ 124 (125)
+|++.+..-+++|.++
T Consensus 10 LIviav~aaVllylW~ 25 (26)
T 3j1r_A 10 LILIAVAAAVLLYTWV 25 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4455555555666654
No 67
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=30.70 E-value=89 Score=18.71 Aligned_cols=53 Identities=11% Similarity=0.221 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hHHHhhhhhhhhHHHHHHHHH
Q 039203 46 DGLKERAVFLKRLTGDIHEEVESHNRLLDRMG--------NSMDASRGIMSGTMDRFKMVF 98 (125)
Q Consensus 46 d~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~--------~~~d~t~~~L~~t~~rl~~v~ 98 (125)
+.|...+..++..+..|..+++.=...++.|. ..|.....+.+....++...+
T Consensus 8 ~~l~~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~W~G~A~~af~~~~~~w~~~~~~~~~~L 68 (94)
T 3fav_B 8 AGIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNAL 68 (94)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666655555555553 234444444444444444443
No 68
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=29.99 E-value=1.3e+02 Score=24.18 Aligned_cols=35 Identities=6% Similarity=0.062 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHH
Q 039203 63 HEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMV 97 (125)
Q Consensus 63 ~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v 97 (125)
.++++..++.++.+....+....+++...+++..+
T Consensus 529 ~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l 563 (597)
T 3oja_B 529 RTEADAKQKETEDLEQENIALEKQLDNKRAKQAEL 563 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHH
Confidence 33333344444444444444444444444444443
No 69
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=29.96 E-value=31 Score=20.06 Aligned_cols=6 Identities=0% Similarity=0.135 Sum_probs=2.5
Q ss_pred HHHHHh
Q 039203 119 VLYYLI 124 (125)
Q Consensus 119 vly~l~ 124 (125)
++|.++
T Consensus 29 i~~~Lw 34 (54)
T 2knc_A 29 LVLAMW 34 (54)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 334443
No 70
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=29.73 E-value=1.1e+02 Score=19.58 Aligned_cols=45 Identities=18% Similarity=0.302 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh
Q 039203 55 LKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK 100 (125)
Q Consensus 55 LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~ 100 (125)
+|.+=..|++|+-.=|++|+.++-.+..-.. +.+..+-+...++.
T Consensus 35 lk~~L~Kig~Ei~~l~eLLn~~E~eV~~Qe~-~~~sLKEL~~s~e~ 79 (91)
T 4aj5_A 35 LKTVLNKIGDEIIVINELLNKLELEIQYQEQ-TNNSLKELCESLEE 79 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 5677778999999999999999988877544 33444555555443
No 71
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=29.56 E-value=83 Score=18.01 Aligned_cols=29 Identities=10% Similarity=0.245 Sum_probs=20.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039203 38 EHDNDKAIDGLKERAVFLKRLTGDIHEEV 66 (125)
Q Consensus 38 e~eqD~~Ld~L~~~V~~LK~ia~~I~~El 66 (125)
..|-|+.||.+......|..--..+.+++
T Consensus 22 ~~EVD~FLd~v~~~~~~l~~e~~~L~~~~ 50 (57)
T 2wuj_A 22 EDEVNEFLAQVRKDYEIVLRKKTELEAKV 50 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999998888755544444444
No 72
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=29.11 E-value=2.6e+02 Score=23.57 Aligned_cols=33 Identities=12% Similarity=0.081 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhh
Q 039203 55 LKRLTGDIHEEVESHNRLLDRMGNSMDASRGIM 87 (125)
Q Consensus 55 LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L 87 (125)
|+.--..|..+|+.|-..|.-|...+++....|
T Consensus 115 LRRrIqyLKekVdnQlsnIrvLQsnLedq~~kI 147 (562)
T 3ghg_A 115 LRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDM 147 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555555444444444444443333
No 73
>2fyz_B Fusion protein, fusion glycoprotein F0; mumps virus fusion protein core, protein binding; 2.20A {Mumps virus} SCOP: h.3.2.1
Probab=28.58 E-value=34 Score=19.44 Aligned_cols=32 Identities=19% Similarity=0.179 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHH
Q 039203 60 GDIHEEVESHNRLLDRMGNSMDASRGIMSGTM 91 (125)
Q Consensus 60 ~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~ 91 (125)
.+|..|+..=|.-|++-.+..+++...|..+.
T Consensus 10 LDISseL~~iNnsL~~A~~~I~eSn~~L~~V~ 41 (48)
T 2fyz_B 10 IDISTELSKVNASLQNTVKYIKESNHQLQSVI 41 (48)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35566665555555555555555555554443
No 74
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=28.08 E-value=36 Score=19.87 Aligned_cols=6 Identities=17% Similarity=0.257 Sum_probs=2.5
Q ss_pred HHHHHh
Q 039203 119 VLYYLI 124 (125)
Q Consensus 119 vly~l~ 124 (125)
++|.++
T Consensus 26 ii~~Lw 31 (54)
T 2l8s_A 26 LILALW 31 (54)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 334443
No 75
>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D*
Probab=27.88 E-value=28 Score=26.41 Aligned_cols=17 Identities=6% Similarity=0.086 Sum_probs=9.1
Q ss_pred ehHHHHHHHHHHHHHHH
Q 039203 107 CTLVGSFVVSFFVLYYL 123 (125)
Q Consensus 107 ~~lI~~lvviflvly~l 123 (125)
+++++|+++++++.|++
T Consensus 210 ~~vl~fL~il~~l~y~~ 226 (248)
T 3cx5_D 210 LKTVIILSSLYLLSIWV 226 (248)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555554
No 76
>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC; 2.70A {Paracoccus denitrificans}
Probab=27.85 E-value=27 Score=26.67 Aligned_cols=17 Identities=24% Similarity=0.145 Sum_probs=9.1
Q ss_pred ehHHHHHHHHHHHHHHH
Q 039203 107 CTLVGSFVVSFFVLYYL 123 (125)
Q Consensus 107 ~~lI~~lvviflvly~l 123 (125)
+++++|++++++++|++
T Consensus 232 ~~vl~fL~il~~l~y~~ 248 (263)
T 2yiu_B 232 FVSVIFLIVLAALLYLT 248 (263)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555554
No 77
>4i0x_A ESAT-6-like protein MAB_3112; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=27.54 E-value=1.1e+02 Score=18.69 Aligned_cols=30 Identities=13% Similarity=0.209 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039203 47 GLKERAVFLKRLTGDIHEEVESHNRLLDRM 76 (125)
Q Consensus 47 ~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l 76 (125)
+|.....++...+..|.+++..=...++.|
T Consensus 4 el~~~a~~~~~~~~~i~~~l~~l~~~v~~l 33 (94)
T 4i0x_A 4 EVGALSKFAASLADQMRAGSNSLDRDVQSL 33 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555555555555444444444
No 78
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=27.08 E-value=62 Score=15.76 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039203 47 GLKERAVFLKRLTGDIHEEVES 68 (125)
Q Consensus 47 ~L~~~V~~LK~ia~~I~~El~~ 68 (125)
.|...|..||.--..+.+|+++
T Consensus 4 qlkdevgelkgevralkdevkd 25 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVKD 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHhc
Confidence 3455566666666666666654
No 79
>1s0p_A CAP, adenylyl cyclase-associated protein; alpha helix bundle, membrane protein; 1.40A {Dictyostelium discoideum} SCOP: a.192.1.1 PDB: 1tjf_A
Probab=26.59 E-value=1.5e+02 Score=21.00 Aligned_cols=29 Identities=14% Similarity=0.116 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039203 46 DGLKERAVFLKRLTGDIHEEVESHNRLLD 74 (125)
Q Consensus 46 d~L~~~V~~LK~ia~~I~~El~~Qn~lLD 74 (125)
+-+.+.|..+-..+..|+.++.+|-+++.
T Consensus 7 ~~i~~~l~~~~~~s~~iGg~v~~~a~~v~ 35 (176)
T 1s0p_A 7 NLVDQHITPFVALSKKLAPEVGNQVEQLV 35 (176)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHH
Confidence 35788999999999999999999988654
No 80
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=26.09 E-value=1.5e+02 Score=20.37 Aligned_cols=60 Identities=12% Similarity=0.255 Sum_probs=24.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhHHHhhhhhhhhHHHHHHHHH
Q 039203 39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHN---RLLDRMGNSMDASRGIMSGTMDRFKMVF 98 (125)
Q Consensus 39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn---~lLD~l~~~~d~t~~~L~~t~~rl~~v~ 98 (125)
++-...++.|...|..|+..-..+-....... .-|+.+...+......++.-.+.|.+..
T Consensus 46 ~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~ 108 (180)
T 1s94_A 46 EEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNI 108 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555544333222222211 2244444444444444444444444443
No 81
>1zrt_D Cytochrome C1; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein; HET: HEM SMA HEC; 3.50A {Rhodobacter capsulatus}
Probab=26.07 E-value=31 Score=26.29 Aligned_cols=17 Identities=12% Similarity=0.042 Sum_probs=9.2
Q ss_pred ehHHHHHHHHHHHHHHH
Q 039203 107 CTLVGSFVVSFFVLYYL 123 (125)
Q Consensus 107 ~~lI~~lvviflvly~l 123 (125)
+++++|++++++++|++
T Consensus 229 ~~vl~fL~il~~l~y~~ 245 (258)
T 1zrt_D 229 LVAMVMLGLLSVMLYLT 245 (258)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555555554
No 82
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=26.06 E-value=1.1e+02 Score=18.18 Aligned_cols=28 Identities=7% Similarity=0.128 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039203 48 LKERAVFLKRLTGDIHEEVESHNRLLDR 75 (125)
Q Consensus 48 L~~~V~~LK~ia~~I~~El~~Qn~lLD~ 75 (125)
|......++..+..|.+++..=...++.
T Consensus 11 l~~~A~~~~~~~~~l~~~l~~L~~~~~~ 38 (97)
T 2vs0_A 11 IRAKSQSYGQGSDQIRQILSDLTRAQGE 38 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444443333333333
No 83
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=25.59 E-value=1.5e+02 Score=19.61 Aligned_cols=51 Identities=8% Similarity=0.152 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh
Q 039203 49 KERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK 100 (125)
Q Consensus 49 ~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~ 100 (125)
..++..+|.-+.+ .-+|+.|...|++....+-.+..+|..+...|..++..
T Consensus 35 ~~kiekmk~e~~d-ey~iKkq~evL~Et~~mipd~~~RL~~a~~~L~~~l~~ 85 (116)
T 3mxz_A 35 AAKTADMKDKGAD-PYDLKQQENVLGESRMMIPDCHKRLESALADLKSTLAE 85 (116)
T ss_dssp HHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCC-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3444555543333 35788999999999999999999999999999999874
No 84
>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3 f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D* 1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D* 1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 2ybb_D* 1bcc_D* 2bcc_D* 3bcc_D* ...
Probab=25.28 E-value=33 Score=25.86 Aligned_cols=17 Identities=6% Similarity=0.112 Sum_probs=9.0
Q ss_pred ehHHHHHHHHHHHHHHH
Q 039203 107 CTLVGSFVVSFFVLYYL 123 (125)
Q Consensus 107 ~~lI~~lvviflvly~l 123 (125)
+++++|++++++++|++
T Consensus 206 ~~vl~fL~il~~l~y~~ 222 (241)
T 1pp9_D 206 LKMLLMMGLLLPLVYAM 222 (241)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555554
No 85
>1qoy_A Hemolysin E; toxin, membrane pore former, cytolysin, pores; 2.0A {Escherichia coli} SCOP: h.4.4.1 PDB: 2wcd_A
Probab=25.26 E-value=1.7e+02 Score=22.87 Aligned_cols=55 Identities=5% Similarity=-0.006 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhh----hHHHHHHHH
Q 039203 42 DKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMS----GTMDRFKMV 97 (125)
Q Consensus 42 D~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~----~t~~rl~~v 97 (125)
|+.++.+...+..|.++-...+.|++.+-+ +.+|+...|..+..|- .+.+++.++
T Consensus 22 ~~~~e~vk~al~Sls~iv~kY~~elD~kvk-f~~LQ~aId~ID~~MlgY~G~AK~~LD~l 80 (318)
T 1qoy_A 22 DKTVEVVKNAIETADGALDLYNKYLDQVIP-WQTFDETIKELSRFKQEYSQAASVLVGDI 80 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHSC-HHHHHHHHHHTTTTGGGSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHhhhcCCcHHHHhhHHH
Confidence 345999999999999999999999999876 6677777776665543 455555555
No 86
>1b9u_A Protein (ATP synthase); membrane protein, hydrolase; HET: GMA; NMR {Synthetic} SCOP: j.35.1.1
Probab=25.25 E-value=39 Score=17.09 Aligned_cols=12 Identities=17% Similarity=0.451 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 039203 111 GSFVVSFFVLYY 122 (125)
Q Consensus 111 ~~lvviflvly~ 122 (125)
.|+++++++-.+
T Consensus 13 ~Flil~~~l~kf 24 (34)
T 1b9u_A 13 AFVLFVLFCMKY 24 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444333333
No 87
>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B*
Probab=25.17 E-value=33 Score=26.33 Aligned_cols=17 Identities=29% Similarity=0.208 Sum_probs=9.3
Q ss_pred ehHHHHHHHHHHHHHHH
Q 039203 107 CTLVGSFVVSFFVLYYL 123 (125)
Q Consensus 107 ~~lI~~lvviflvly~l 123 (125)
+++++|++++++++|++
T Consensus 231 ~~Vl~fL~il~~l~y~~ 247 (269)
T 2qjy_B 231 FTAVMFLTVLSVLLYLT 247 (269)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555565555555554
No 88
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=25.01 E-value=2e+02 Score=20.78 Aligned_cols=54 Identities=9% Similarity=0.223 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHH
Q 039203 42 DKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFK 95 (125)
Q Consensus 42 D~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~ 95 (125)
.+.++.+...+..+......|..-.++|..-.+++...++........+...+.
T Consensus 146 ~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~ 199 (227)
T 1qu7_A 146 GETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNAALVE 199 (227)
T ss_dssp TTHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555666666666666666666666666666666555444444433333
No 89
>1z65_A PRPLP, prion-like protein doppel, doppelganger; transmembrane helix, DHPC, mouse doppel, unknown function; NMR {Synthetic}
Probab=24.65 E-value=36 Score=17.39 Aligned_cols=12 Identities=0% Similarity=-0.319 Sum_probs=6.1
Q ss_pred eehHHHHHHHHH
Q 039203 106 ICTLVGSFVVSF 117 (125)
Q Consensus 106 ~~~lI~~lvvif 117 (125)
.||++.+++++|
T Consensus 7 ~~wlai~c~LLf 18 (30)
T 1z65_A 7 TWWVAILCMLLA 18 (30)
T ss_dssp SHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 456555554443
No 90
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=24.61 E-value=47 Score=18.24 Aligned_cols=6 Identities=0% Similarity=0.135 Sum_probs=2.4
Q ss_pred HHHHHh
Q 039203 119 VLYYLI 124 (125)
Q Consensus 119 vly~l~ 124 (125)
+.|.++
T Consensus 27 i~~~Lw 32 (42)
T 2k1a_A 27 LVLAMW 32 (42)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 334443
No 91
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=23.11 E-value=2.5e+02 Score=21.30 Aligned_cols=51 Identities=12% Similarity=0.168 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHH
Q 039203 42 DKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMD 92 (125)
Q Consensus 42 D~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~ 92 (125)
-...+.|......+...+..+..-+..|..-+.++...++.....+.....
T Consensus 58 ~~~~~~l~~~~~~l~~~~~~~~~~~~~q~~~~~~~~~~~~el~~~~~~~~~ 108 (341)
T 3zx6_A 58 RNGANAIYSGASEIATGNNDLSSRTEQQAASLEETAASMEQLTATVKQNAE 108 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555666666666666666666655555555444444333
No 92
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=23.00 E-value=1.3e+02 Score=18.10 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=27.0
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039203 36 IDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMG 77 (125)
Q Consensus 36 ~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~ 77 (125)
.+-+--++++..|...|..|......+..|...-...+..|.
T Consensus 22 afReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 22 AFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566778899999998888776666555544443444433
No 93
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=22.83 E-value=1.5e+02 Score=18.70 Aligned_cols=45 Identities=11% Similarity=0.123 Sum_probs=33.9
Q ss_pred HHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHhh
Q 039203 38 EHDNDKAIDGLKERAVFLK-RLTGDIHEEVESHNRLLDRMGNSMDAS 83 (125)
Q Consensus 38 e~eqD~~Ld~L~~~V~~LK-~ia~~I~~El~~Qn~lLD~l~~~~d~t 83 (125)
+--+|..+..|..+|-.|+ +++.-|+.-....++ |-+|++.|.++
T Consensus 30 ~~~~d~eiq~LY~~v~~lRPkL~~li~kysqKk~e-L~~Ln~kl~~a 75 (88)
T 2pjw_H 30 EVLQDPHIGDMYGSVTPLRPQVTRMLGKYAKEKED-MLSLRQVLANA 75 (88)
T ss_dssp HHHSCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred hhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4456778999999999998 788888888887775 44555555443
No 94
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=22.59 E-value=42 Score=25.44 Aligned_cols=18 Identities=22% Similarity=0.148 Sum_probs=10.2
Q ss_pred eehHHHHHHHHHHHHHHH
Q 039203 106 ICTLVGSFVVSFFVLYYL 123 (125)
Q Consensus 106 ~~~lI~~lvviflvly~l 123 (125)
||.+.+++.++|.++|++
T Consensus 57 ww~~~f~~~iv~~~~y~~ 74 (311)
T 3mk7_C 57 WWFLLFIGTLVFGILYLV 74 (311)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444445555566666665
No 95
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=22.52 E-value=60 Score=17.09 Aligned_cols=9 Identities=0% Similarity=-0.042 Sum_probs=3.6
Q ss_pred ceehHHHHH
Q 039203 105 RICTLVGSF 113 (125)
Q Consensus 105 ~~~~lI~~l 113 (125)
+.+..++++
T Consensus 7 GTl~~V~il 15 (34)
T 3s8f_C 7 GALAVILVL 15 (34)
T ss_dssp HHHHHHHHH
T ss_pred ceehHHHHH
Confidence 344433333
No 96
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=22.49 E-value=2.6e+02 Score=21.67 Aligned_cols=37 Identities=14% Similarity=0.193 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhh
Q 039203 48 LKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASR 84 (125)
Q Consensus 48 L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~ 84 (125)
|+..|......-..+...++.+..-|++|...+....
T Consensus 17 ~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 17 LEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444444555544444333
No 97
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=22.33 E-value=2.6e+02 Score=21.21 Aligned_cols=48 Identities=10% Similarity=0.250 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHH
Q 039203 44 AIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTM 91 (125)
Q Consensus 44 ~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~ 91 (125)
.+..+...+..+......|..-.++|..-.+++...++........+.
T Consensus 228 ~~~~i~~~~~~i~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~ 275 (341)
T 3zx6_A 228 TMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNA 275 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555555544444433333
No 98
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=22.29 E-value=1.3e+02 Score=17.61 Aligned_cols=35 Identities=17% Similarity=0.141 Sum_probs=22.4
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039203 35 GIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESH 69 (125)
Q Consensus 35 ~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Q 69 (125)
..+...-+...+.|.+.+...+.....+..|++.-
T Consensus 40 ~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~tp 74 (114)
T 3zcc_A 40 GILAKSIERLRRSLKQLADDGTLLMAGVSHDLRTP 74 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCh
Confidence 34445556667777777777666666666666654
No 99
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}
Probab=21.97 E-value=19 Score=17.94 Aligned_cols=13 Identities=8% Similarity=0.404 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 039203 109 LVGSFVVSFFVLY 121 (125)
Q Consensus 109 lI~~lvviflvly 121 (125)
+++.++++|++.|
T Consensus 7 ~l~~vv~~F~icW 19 (33)
T 2ki9_A 7 TLGLVLAVLLICW 19 (33)
T ss_dssp HHHHHHHHHTTTS
T ss_pred hHHHHHHHHHHHH
Confidence 3444455555443
No 100
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=21.40 E-value=1.5e+02 Score=18.13 Aligned_cols=33 Identities=15% Similarity=0.296 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHH
Q 039203 62 IHEEVESHNRLLDRMGNSMDASRGIMSGTMDRF 94 (125)
Q Consensus 62 I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl 94 (125)
=.+|+..+...|++++..++.-...+..-...+
T Consensus 31 K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 31 KIEELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555444444444444333333
No 101
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=21.34 E-value=1.6e+02 Score=19.82 Aligned_cols=27 Identities=11% Similarity=0.121 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 039203 55 LKRLTGDIHEEVESHNRLLDRMGNSMD 81 (125)
Q Consensus 55 LK~ia~~I~~El~~Qn~lLD~l~~~~d 81 (125)
.+.++..|...++.....|..+...+.
T Consensus 22 a~~~a~~i~~~l~~~~~~l~~la~~~~ 48 (217)
T 4dah_A 22 LNLHRNKINYLIGETMARMTSLSIAID 48 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345688899999999999998888544
No 102
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=20.68 E-value=2.6e+02 Score=22.22 Aligned_cols=55 Identities=7% Similarity=0.111 Sum_probs=40.2
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhh
Q 039203 35 GIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSG 89 (125)
Q Consensus 35 ~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~ 89 (125)
+.+.++=+...+.+...-..|..+-.+++.|++.+-.-++.+-..+......+..
T Consensus 67 ~~vl~~a~~La~~~n~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI~~ 121 (463)
T 2d4y_A 67 QALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISR 121 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666667777777777888888888888888877777777776666666543
No 103
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=20.58 E-value=1.5e+02 Score=17.90 Aligned_cols=52 Identities=12% Similarity=0.088 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHH
Q 039203 46 DGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMV 97 (125)
Q Consensus 46 d~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v 97 (125)
|.|..+++.|+.=.-.-.+.++.-+.-+.+..........-+....+|+..+
T Consensus 2 ~~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~l 53 (81)
T 1ic2_A 2 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGT 53 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4566666777666555555555555555555555555555555555555444
No 104
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=20.48 E-value=1.5e+02 Score=17.63 Aligned_cols=16 Identities=19% Similarity=0.171 Sum_probs=6.6
Q ss_pred hHHHHHHHHHHHHHHH
Q 039203 40 DNDKAIDGLKERAVFL 55 (125)
Q Consensus 40 eqD~~Ld~L~~~V~~L 55 (125)
+-+..++.|...|..|
T Consensus 27 ~i~~~l~~L~~~v~~L 42 (99)
T 3zbh_A 27 NVTELIARLDQMSHTL 42 (99)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444443
No 105
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=20.47 E-value=1.7e+02 Score=18.53 Aligned_cols=16 Identities=31% Similarity=0.260 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 039203 43 KAIDGLKERAVFLKRL 58 (125)
Q Consensus 43 ~~Ld~L~~~V~~LK~i 58 (125)
..++.|...|..|+..
T Consensus 19 ~~i~~i~~~v~~l~~~ 34 (127)
T 1ez3_A 19 GFIDKIAENVEEVKRK 34 (127)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555554433
No 106
>2ieq_A S glycoprotein, spike glycoprotein, peplomer protein, E2; membrane fusion, virus entry, six-HEL bundle, viral protein; 1.75A {Human coronavirus}
Probab=20.43 E-value=1.5e+02 Score=19.56 Aligned_cols=32 Identities=13% Similarity=0.195 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039203 40 DNDKAIDGLKERAVFLKRLTGDIHEEVESHNR 71 (125)
Q Consensus 40 eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~ 71 (125)
+.-..||.|+..+..|.+++.++..-++.=|+
T Consensus 73 ni~~elD~LEa~A~~l~~~~~elq~~idn~n~ 104 (109)
T 2ieq_A 73 NLSSELKQLEAKTASLFQTTVELQGLIDQINS 104 (109)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34457889999999999999888776665554
No 107
>1oxj_A RNA-binding protein smaug; SAM domain, PHAT domain; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 a.118.1.13
Probab=20.13 E-value=1.1e+02 Score=21.86 Aligned_cols=65 Identities=8% Similarity=0.072 Sum_probs=51.1
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh
Q 039203 35 GIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK 100 (125)
Q Consensus 35 ~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~ 100 (125)
+.+.+=.|+.|+.+.=+...-|.+...| ++++++...+-.++.++-.-...|..+...++.++-+
T Consensus 32 e~~~~LTdedL~~~GVT~GARrKIL~aI-q~Lrer~~~l~~le~~~~~g~~~l~~~l~el~~i~~t 96 (173)
T 1oxj_A 32 EEMLLITEDFLQSVGVTKGASHKLALCI-DKLKERANILNRVEQELLSGQMELSTAVEELTNIVLT 96 (173)
T ss_dssp HHHTTCCHHHHHHTTCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHTTTTS
T ss_pred HHHHhcCHHHHHHCCCchHHHHHHHHHH-HHHHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHhC
Confidence 4455555666777766667778888888 5788888999999999988667899999999988653
Done!