Query 039203
Match_columns 125
No_of_seqs 117 out of 816
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 12:07:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039203.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039203hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wa8b1 a.25.3.1 (B:602-695) E 62.1 12 0.00087 21.8 8.1 56 45-100 7-70 (94)
2 d1wa8a1 a.25.3.1 (A:1-99) ESAT 55.1 16 0.0012 21.1 8.2 53 46-98 8-68 (99)
3 d1h7ca_ a.7.5.1 (A:) Tubulin c 34.0 45 0.0033 20.1 5.5 54 46-100 28-81 (103)
4 d1xmec1 f.23.9.1 (C:2-34) Bact 33.7 17 0.0012 17.5 2.4 13 109-121 10-22 (33)
5 d2iuba2 f.17.3.1 (A:286-349) M 27.1 17 0.0012 19.8 2.0 19 106-124 42-60 (64)
6 d1tjla1 a.2.14.1 (A:7-110) Dna 26.4 19 0.0014 22.0 2.4 12 13-24 12-23 (104)
7 d1io1a_ e.32.1.1 (A:) Phase 1 26.4 80 0.0058 21.1 6.1 41 37-77 18-71 (395)
8 d1fftb2 f.17.2.1 (B:27-117) Cy 24.7 4.3 0.00031 24.3 -1.1 16 110-125 27-42 (91)
9 d1ppjd2 f.23.11.1 (D:196-241) 24.6 28 0.0021 18.2 2.5 14 109-122 13-26 (46)
10 d1ykhb1 a.252.1.1 (B:2-130) RN 24.5 57 0.0041 20.3 4.5 66 35-100 52-120 (129)
11 d1s0pa_ a.192.1.1 (A:) N-termi 22.9 52 0.0038 21.8 4.3 31 46-76 7-37 (176)
No 1
>d1wa8b1 a.25.3.1 (B:602-695) ESAT-6, EsxA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=62.13 E-value=12 Score=21.80 Aligned_cols=56 Identities=11% Similarity=0.230 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hHHHhhhhhhhhHHHHHHHHHHh
Q 039203 45 IDGLKERAVFLKRLTGDIHEEVESHNRLLDRMG--------NSMDASRGIMSGTMDRFKMVFEK 100 (125)
Q Consensus 45 Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~--------~~~d~t~~~L~~t~~rl~~v~~~ 100 (125)
...|...+..++..+..|..++++-...++.|. ..|.....+-+....+|..++..
T Consensus 7 ~~~l~~~a~~i~~~~~~i~~~l~~L~~~~~~l~~~W~G~A~~af~~~~~~W~~~~~~l~~~L~~ 70 (94)
T d1wa8b1 7 FAGIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQN 70 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSCSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888889999999999998888888873 45666777777777777666543
No 2
>d1wa8a1 a.25.3.1 (A:1-99) ESAT-6 like protein EsxB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=55.14 E-value=16 Score=21.14 Aligned_cols=53 Identities=15% Similarity=0.275 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhHHHhhhhhhhhHHHHHHHHH
Q 039203 46 DGLKERAVFLKRLTGDIHEEVESHNRLLDRM--------GNSMDASRGIMSGTMDRFKMVF 98 (125)
Q Consensus 46 d~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l--------~~~~d~t~~~L~~t~~rl~~v~ 98 (125)
+.|.+....++..+..|.+.+..-...++.| ...|.......+....++...+
T Consensus 8 ~~l~~~A~~~~~~~~~l~~~l~~l~~~v~~l~~~W~G~A~~af~~~~~~w~~~~~~l~~~L 68 (99)
T d1wa8a1 8 ATLAQEAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQEL 68 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666777776666666666666 3445555555555555544444
No 3
>d1h7ca_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.96 E-value=45 Score=20.12 Aligned_cols=54 Identities=7% Similarity=0.190 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh
Q 039203 46 DGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK 100 (125)
Q Consensus 46 d~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~ 100 (125)
+.-..++..+|.-+.+ .-+|+.|...|.+....+-.+..+|..+...+..++..
T Consensus 28 ~~q~~k~ek~k~~~~d-ey~iKkq~~vl~Es~~mipd~~~Rl~~a~~~L~~~l~~ 81 (103)
T d1h7ca_ 28 KQQEEKIEKMRAEDGE-NYDIKKQAEILQESRMMIPDCQRRLEAAYLDLQRILEN 81 (103)
T ss_dssp HHHHHHHHHHHHHHCS-CTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555543322 22789999999999999999999999999999999875
No 4
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=33.70 E-value=17 Score=17.52 Aligned_cols=13 Identities=8% Similarity=0.444 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 039203 109 LVGSFVVSFFVLY 121 (125)
Q Consensus 109 lI~~lvviflvly 121 (125)
+|+++.+.++++|
T Consensus 10 vi~il~l~ilvfw 22 (33)
T d1xmec1 10 VILVLTLTILVFW 22 (33)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444433444444
No 5
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=27.10 E-value=17 Score=19.84 Aligned_cols=19 Identities=5% Similarity=0.032 Sum_probs=8.2
Q ss_pred eehHHHHHHHHHHHHHHHh
Q 039203 106 ICTLVGSFVVSFFVLYYLI 124 (125)
Q Consensus 106 ~~~lI~~lvviflvly~l~ 124 (125)
.++++++.+++.+++|+++
T Consensus 42 ~~~~~~~~~~~~~~~~~~f 60 (64)
T d2iuba2 42 YPVVLAVMGVIAVIMVVYF 60 (64)
T ss_dssp CHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333444444455444
No 6
>d1tjla1 a.2.14.1 (A:7-110) DnaK suppressor protein DksA, alpha-hairpin domain {Escherichia coli [TaxId: 562]}
Probab=26.44 E-value=19 Score=21.95 Aligned_cols=12 Identities=17% Similarity=0.113 Sum_probs=7.6
Q ss_pred ccCCCCCCCCCC
Q 039203 13 ALFDEYDGLEEG 24 (125)
Q Consensus 13 ~l~~~~~~~~~~ 24 (125)
..+.||.|.|..
T Consensus 12 ~~~~pY~p~~~e 23 (104)
T d1tjla1 12 AGVEPYQEKPGE 23 (104)
T ss_dssp TTCCCCCCCTTC
T ss_pred cCCCCCCCCCCC
Confidence 345777777744
No 7
>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]}
Probab=26.44 E-value=80 Score=21.07 Aligned_cols=41 Identities=15% Similarity=0.273 Sum_probs=28.6
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHhh
Q 039203 37 DEHDNDKAIDGLKERAVFLKRLTGD-------------IHEEVESHNRLLDRMG 77 (125)
Q Consensus 37 le~eqD~~Ld~L~~~V~~LK~ia~~-------------I~~El~~Qn~lLD~l~ 77 (125)
+.|=-|-.|++++..++|+|++|.+ |..|++...+=||++.
T Consensus 18 ~lqtae~al~~~~~iL~r~reLavqaan~t~~~~dr~ai~~E~~~l~~ei~~ia 71 (395)
T d1io1a_ 18 IAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVS 71 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455678899999999999999875 5555555444444443
No 8
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=24.70 E-value=4.3 Score=24.29 Aligned_cols=16 Identities=0% Similarity=0.057 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHhC
Q 039203 110 VGSFVVSFFVLYYLIR 125 (125)
Q Consensus 110 I~~lvviflvly~l~k 125 (125)
++|+++..+++|+++|
T Consensus 27 iv~v~V~~~~~~~~~r 42 (91)
T d1fftb2 27 IVVIPAILMAVGFAWK 42 (91)
T ss_dssp TTTTHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHhhhee
Confidence 4444555566666654
No 9
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=24.61 E-value=28 Score=18.16 Aligned_cols=14 Identities=7% Similarity=0.102 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 039203 109 LVGSFVVSFFVLYY 122 (125)
Q Consensus 109 lI~~lvviflvly~ 122 (125)
+++|+.+++.++|+
T Consensus 13 v~~~l~~l~~l~yy 26 (46)
T d1ppjd2 13 MLLMMGLLLPLVYA 26 (46)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 10
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.53 E-value=57 Score=20.35 Aligned_cols=66 Identities=8% Similarity=0.079 Sum_probs=47.1
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh
Q 039203 35 GIDEHDNDKAIDGLKERAVFLKRLTGDI---HEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK 100 (125)
Q Consensus 35 ~~le~eqD~~Ld~L~~~V~~LK~ia~~I---~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~ 100 (125)
+.++..+++.--.|..+.+.+-.+--.. +.--+.|.+.|.+|+.....+...+..+.++-..++++
T Consensus 52 e~f~~~~~elA~dii~kakqId~LI~sLP~~~~see~Q~~~i~~Le~E~~~~~~el~~~v~e~e~ll~~ 120 (129)
T d1ykhb1 52 EEFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRH 120 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666655554443333 22346788999999999999999999999988888764
No 11
>d1s0pa_ a.192.1.1 (A:) N-terminal domain of adenylylcyclase associated protein, CAP {Dictyostelium discoideum [TaxId: 44689]}
Probab=22.88 E-value=52 Score=21.78 Aligned_cols=31 Identities=13% Similarity=0.130 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039203 46 DGLKERAVFLKRLTGDIHEEVESHNRLLDRM 76 (125)
Q Consensus 46 d~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l 76 (125)
+-+.+.|..+-..+..|+.+|.+|..++.+.
T Consensus 7 ~~i~~~v~~~~~~s~~Igg~V~~~a~~v~~a 37 (176)
T d1s0pa_ 7 NLVDQHITPFVALSKKLAPEVGNQVEQLVKA 37 (176)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 3578899999999999999999998877653
Done!